BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62] (242 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62] gi|254040307|gb|ACT57103.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/242 (100%), Positives = 242/242 (100%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT Sbjct: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ Sbjct: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG Sbjct: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN Sbjct: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 Query: 241 EV 242 EV Sbjct: 241 EV 242 >gi|315121831|ref|YP_004062320.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495233|gb|ADR51832.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 250 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/239 (84%), Positives = 228/239 (95%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL GR+ENQMREIS TR +SK+AEGSCLVKFG+THLLTTATLEEKVP+W+RNTK+GWIT Sbjct: 3 MRLLGRKENQMREISFTRGISKHAEGSCLVKFGETHLLTTATLEEKVPIWLRNTKNGWIT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+KREAVSGRQGGR+QEIQR+IGR+LRS+VDLSALG RQIIIDCDVIQ Sbjct: 63 AEYGMLPRSTGSRIKREAVSGRQGGRTQEIQRLIGRSLRSIVDLSALGPRQIIIDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAW+ALHDCLQHMED ++KFQLSQVLKGHVAAISCG+L G PIVDL+Y Sbjct: 123 ADGGTRTAAITGAWIALHDCLQHMEDRNSKFQLSQVLKGHVAAISCGILSGNPIVDLNYE 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ID DANFVMTD+G+IVE+Q SAE+ATFSQD FF+MLNLAKDRI+DLI+LQKDVIS Sbjct: 183 EDSSIDADANFVMTDAGNIVEIQVSAEKATFSQDQFFSMLNLAKDRISDLIRLQKDVIS 241 >gi|159184261|ref|NP_353359.2| ribonuclease PH [Agrobacterium tumefaciens str. C58] gi|21759397|sp|Q8UIG8|RNPH_AGRT5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|159139588|gb|AAK86144.2| ribonuclease PH [Agrobacterium tumefaciens str. C58] Length = 238 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 156/239 (65%), Positives = 193/239 (80%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+KREA SG+QGGR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRSTNERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N ++ +VLK H+AAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-TRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ + DANFV+T SG IVEVQG+AE A FS++ F +L LAK ++L+ LQK I+ Sbjct: 180 EDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238 >gi|222084657|ref|YP_002543186.1| ribonuclease PH [Agrobacterium radiobacter K84] gi|254808098|sp|B9J7T9|RNPH_AGRRK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|221722105|gb|ACM25261.1| ribonuclease PH [Agrobacterium radiobacter K84] Length = 238 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 153/239 (64%), Positives = 195/239 (81%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA SG+QGGR+QEIQR+IGR+LR+VVDL LG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLKELGERQITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+AL+DCL+ ME N ++ +VLK H+AAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWIALYDCLKWMES-RNMIKVERVLKDHIAAISCGIFASQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ + DANFVMT G IVE+QG+AE FS++ F +++LAK+ IA+L++LQK I+ Sbjct: 180 EDSSAETDANFVMTGKGGIVEIQGTAEGTPFSEEEFTTLMHLAKNGIAELVELQKQAIA 238 >gi|15964129|ref|NP_384482.1| ribonuclease PH [Sinorhizobium meliloti 1021] gi|307301274|ref|ZP_07581036.1| ribonuclease PH [Sinorhizobium meliloti BL225C] gi|307317945|ref|ZP_07597382.1| ribonuclease PH [Sinorhizobium meliloti AK83] gi|21759408|sp|Q92SK2|RNPH_RHIME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|15073305|emb|CAC41813.1| Probable ribonuclease PH protein [Sinorhizobium meliloti 1021] gi|306896347|gb|EFN27096.1| ribonuclease PH [Sinorhizobium meliloti AK83] gi|306903730|gb|EFN34317.1| ribonuclease PH [Sinorhizobium meliloti BL225C] Length = 239 Score = 331 bits (848), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 154/240 (64%), Positives = 195/240 (81%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLV+FGDTH+L TA+LEEKVP W+RN GWIT Sbjct: 1 MRPSGRKTDQMRKVSFERSFSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATGERMRREAATGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N +L +VLK HVAAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMVKLEKVLKDHVAAISCGIFANQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + DANFVMT SG +VE+QG+AE FS++ F +++ LAK+ IA+L+++QK I+ Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELVEMQKQAIAG 239 >gi|222147322|ref|YP_002548279.1| ribonuclease PH [Agrobacterium vitis S4] gi|254808101|sp|B9JZG3|RNPH_AGRVS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|221734312|gb|ACM35275.1| ribonuclease PH [Agrobacterium vitis S4] Length = 239 Score = 330 bits (847), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 155/240 (64%), Positives = 192/240 (80%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR+IS R SK+AEGSCLVKFGDTH+L TA+LE++ P W+RNT GW+T Sbjct: 1 MRPSGRKTDQMRKISFERNFSKHAEGSCLVKFGDTHVLCTASLEDRTPPWLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA SG+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERIKREASSGKQSGRTQEIQRLIGRSLRAVVDLEALGERQISLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N ++ +VLK HVAAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWMES-RNIIKVDRVLKDHVAAISCGIFAAQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + DANFVMT +G IVE+QG+AE FSQ+ F +L LA+ IA+L+ LQK I+ Sbjct: 180 EDSAAETDANFVMTGTGGIVEIQGTAEGKPFSQEEFLTLLGLAQTGIAELVDLQKQAIAG 239 >gi|325291761|ref|YP_004277625.1| ribonuclease PH [Agrobacterium sp. H13-3] gi|325059614|gb|ADY63305.1| ribonuclease PH [Agrobacterium sp. H13-3] Length = 238 Score = 330 bits (847), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 155/239 (64%), Positives = 193/239 (80%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRSTHERMKREASAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N ++ +VLK H+AAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-TRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ + DANFV+T SG IVEVQG+AE A FS++ F +L LAK ++L+ LQK I+ Sbjct: 180 EDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238 >gi|209547618|ref|YP_002279535.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226736929|sp|B5ZMW8|RNPH_RHILW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|209533374|gb|ACI53309.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 239 Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 151/240 (62%), Positives = 194/240 (80%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T Sbjct: 1 MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG W+AL+DCL+ ME N ++ +VLK HVAAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMES-RNMIKVDRVLKDHVAAISCGVFASQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + DANFVMT +G IVE+QG+AE FS++ F +++ LAK+ I +L+ LQK I+ Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTSLMGLAKNGIGELVALQKQAIAG 239 >gi|227820597|ref|YP_002824567.1| ribonuclease PH [Sinorhizobium fredii NGR234] gi|254808598|sp|C3MEJ1|RNPH_RHISN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|227339596|gb|ACP23814.1| ribonuclease PH [Sinorhizobium fredii NGR234] Length = 239 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 153/239 (64%), Positives = 193/239 (80%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLV+FGDTH+L TA+LE+KVP W+RN GWIT Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASLEDKVPAWLRNGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATGERMRREASTGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N ++ +VLK HVAAISCG+ +VDLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMIKVERVLKDHVAAISCGIFANQAVVDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT SG +VE+QG+AE FS++ F +++ LAKD IA+L+ LQK ++ Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMQLAKDGIAELVALQKQAVA 238 >gi|150395238|ref|YP_001325705.1| ribonuclease PH [Sinorhizobium medicae WSM419] gi|166228322|sp|A6U5E0|RNPH_SINMW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|150026753|gb|ABR58870.1| ribonuclease PH [Sinorhizobium medicae WSM419] Length = 239 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 153/240 (63%), Positives = 195/240 (81%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLV+FGDTH+L TA+LE+KVP W+RN GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASLEDKVPGWLRNGGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMRREASAGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N +L +VLK HVAAISCG+ P+VDLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMVKLEKVLKDHVAAISCGIFASQPVVDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + DANFVMT SG +VE+QG+AE FS++ F +++ LAK+ IA+LI++QK I+ Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELIEMQKLAIAG 239 >gi|116250149|ref|YP_765987.1| ribonuclease PH [Rhizobium leguminosarum bv. viciae 3841] gi|166228307|sp|Q1MMD1|RNPH_RHIL3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|115254797|emb|CAK05871.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 239 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 150/238 (63%), Positives = 192/238 (80%), Gaps = 1/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT GW+T Sbjct: 1 MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG W+AL+DCL+ ME N ++ +VLK HVAAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMES-RNMIKVDRVLKDHVAAISCGIFASQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ + DANFVMT +G IVE+QG+AE FS+ F +++ LA++ I +L+ LQK + Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAV 237 >gi|241202761|ref|YP_002973857.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856651|gb|ACS54318.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 239 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 150/238 (63%), Positives = 192/238 (80%), Gaps = 1/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT GW+T Sbjct: 1 MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG W+AL+DCL+ ME N ++ +VLK HVAAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMES-RNMIKVERVLKDHVAAISCGIFASQPVIDLDYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ + DANFVMT +G IVE+QG+AE FS+ F +++ LA++ I +L+ LQK + Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAV 237 >gi|86356020|ref|YP_467912.1| ribonuclease PH [Rhizobium etli CFN 42] gi|123513255|sp|Q2KDA1|RNPH_RHIEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|86280122|gb|ABC89185.1| ribonuclease PH protein [Rhizobium etli CFN 42] Length = 239 Score = 325 bits (834), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 150/239 (62%), Positives = 193/239 (80%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG +QI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGEKQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG W+AL+DCL+ ME N ++ +VLK HVAAISCG+ ++DLDY Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMES-RNMIKVDRVLKDHVAAISCGVFANQAVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ + DANFVMT +G IVE+QG+AE FS++ F +++ LAK+ I +L+ LQK I+ Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFSSLMRLAKNGIGELVALQKQAIA 238 >gi|190890032|ref|YP_001976574.1| ribonuclease PH protein [Rhizobium etli CIAT 652] gi|218516544|ref|ZP_03513384.1| ribonuclease PH [Rhizobium etli 8C-3] gi|226736928|sp|B3PZA2|RNPH_RHIE6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|190695311|gb|ACE89396.1| ribonuclease PH protein [Rhizobium etli CIAT 652] Length = 239 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 149/240 (62%), Positives = 193/240 (80%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LE+K P W+RNT GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEDKTPPWLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG W+AL+DCL+ ME N ++ +VLK HVAAISCG+ ++DLDY Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMES-RNMIKVDRVLKDHVAAISCGVFASQAVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + DANFVMT +G IVE+QG+AE F+++ F +++ LAK+ I +L+ LQK I+ Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFTEEEFTSLMGLAKNGIGELVALQKQAIAG 239 >gi|163757816|ref|ZP_02164905.1| ribonuclease PH [Hoeflea phototrophica DFL-43] gi|162285318|gb|EDQ35600.1| ribonuclease PH [Hoeflea phototrophica DFL-43] Length = 238 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 152/239 (63%), Positives = 192/239 (80%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+RN GW+T Sbjct: 1 MRPSGRKTDQMRAVSFERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRNGGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA SG+QGGR+ EIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTGDRMRREATSGKQGGRTLEIQRLIGRSLRAVVDLPALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAW+ALHDCL+ ME+ S ++ +VLK HVAA+SCG+ G + DLDY Sbjct: 121 ADGGTRTAAITGAWIALHDCLKWMEERS-MVKVERVLKDHVAAVSCGIFAGQAVTDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ + DANFVMT +G IVE+QG+AE F+++ ++ LAK I DL+ LQK ++ Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGEPFTEEQLGQLMGLAKAAINDLVALQKSAVA 238 >gi|62289149|ref|YP_220942.1| ribonuclease PH [Brucella abortus bv. 1 str. 9-941] gi|82699088|ref|YP_413662.1| ribonuclease PH [Brucella melitensis biovar Abortus 2308] gi|148559274|ref|YP_001258205.1| ribonuclease PH [Brucella ovis ATCC 25840] gi|161618161|ref|YP_001592048.1| ribonuclease PH [Brucella canis ATCC 23365] gi|163842442|ref|YP_001626846.1| ribonuclease PH [Brucella suis ATCC 23445] gi|189023423|ref|YP_001934191.1| ribonuclease PH [Brucella abortus S19] gi|225626711|ref|ZP_03784750.1| ribonuclease PH [Brucella ceti str. Cudo] gi|237814642|ref|ZP_04593640.1| ribonuclease PH [Brucella abortus str. 2308 A] gi|254690474|ref|ZP_05153728.1| ribonuclease PH [Brucella abortus bv. 6 str. 870] gi|254694963|ref|ZP_05156791.1| ribonuclease PH [Brucella abortus bv. 3 str. Tulya] gi|254696594|ref|ZP_05158422.1| ribonuclease PH [Brucella abortus bv. 2 str. 86/8/59] gi|254700978|ref|ZP_05162806.1| ribonuclease PH [Brucella suis bv. 5 str. 513] gi|254705349|ref|ZP_05167177.1| ribonuclease PH [Brucella suis bv. 3 str. 686] gi|254707138|ref|ZP_05168966.1| ribonuclease PH [Brucella pinnipedialis M163/99/10] gi|254709319|ref|ZP_05171130.1| ribonuclease PH [Brucella pinnipedialis B2/94] gi|254713260|ref|ZP_05175071.1| ribonuclease PH [Brucella ceti M644/93/1] gi|254716387|ref|ZP_05178198.1| ribonuclease PH [Brucella ceti M13/05/1] gi|254718387|ref|ZP_05180198.1| ribonuclease PH [Brucella sp. 83/13] gi|254731507|ref|ZP_05190085.1| ribonuclease PH [Brucella abortus bv. 4 str. 292] gi|256030842|ref|ZP_05444456.1| ribonuclease PH [Brucella pinnipedialis M292/94/1] gi|256060312|ref|ZP_05450485.1| ribonuclease PH [Brucella neotomae 5K33] gi|256158871|ref|ZP_05456725.1| ribonuclease PH [Brucella ceti M490/95/1] gi|256254248|ref|ZP_05459784.1| ribonuclease PH [Brucella ceti B1/94] gi|256258730|ref|ZP_05464266.1| ribonuclease PH [Brucella abortus bv. 9 str. C68] gi|256368637|ref|YP_003106143.1| ribonuclease PH [Brucella microti CCM 4915] gi|260169746|ref|ZP_05756557.1| ribonuclease PH [Brucella sp. F5/99] gi|260546446|ref|ZP_05822186.1| ribonuclease PH [Brucella abortus NCTC 8038] gi|260567190|ref|ZP_05837660.1| ribonuclease PH [Brucella suis bv. 4 str. 40] gi|260756028|ref|ZP_05868376.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870] gi|260759252|ref|ZP_05871600.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292] gi|260760975|ref|ZP_05873318.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260885049|ref|ZP_05896663.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68] gi|261215305|ref|ZP_05929586.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261218173|ref|ZP_05932454.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1] gi|261221399|ref|ZP_05935680.1| tRNA nucleotidyltransferase [Brucella ceti B1/94] gi|261314614|ref|ZP_05953811.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10] gi|261316830|ref|ZP_05956027.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94] gi|261320979|ref|ZP_05960176.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1] gi|261324287|ref|ZP_05963484.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33] gi|261751499|ref|ZP_05995208.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513] gi|261756063|ref|ZP_05999772.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686] gi|261759287|ref|ZP_06002996.1| ribonuclease PH [Brucella sp. F5/99] gi|265983351|ref|ZP_06096086.1| tRNA nucleotidyltransferase [Brucella sp. 83/13] gi|265987900|ref|ZP_06100457.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1] gi|265997361|ref|ZP_06109918.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1] gi|294851571|ref|ZP_06792244.1| ribonuclease PH [Brucella sp. NVSL 07-0026] gi|297247565|ref|ZP_06931283.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196] gi|306839620|ref|ZP_07472424.1| ribonuclease PH [Brucella sp. NF 2653] gi|306842542|ref|ZP_07475193.1| ribonuclease PH [Brucella sp. BO2] gi|306844440|ref|ZP_07477030.1| ribonuclease PH [Brucella sp. BO1] gi|75497456|sp|Q57FK3|RNPH_BRUAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123546812|sp|Q2YP33|RNPH_BRUA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228268|sp|A5VNA8|RNPH_BRUO2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043754|sp|A9M7B8|RNPH_BRUC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043755|sp|B0CJ32|RNPH_BRUSI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736890|sp|B2S8G4|RNPH_BRUA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|62195281|gb|AAX73581.1| Rph, ribonuclease PH [Brucella abortus bv. 1 str. 9-941] gi|82615189|emb|CAJ10128.1| 3' exoribonuclease:Ribonuclease PH [Brucella melitensis biovar Abortus 2308] gi|148370531|gb|ABQ60510.1| ribonuclease PH [Brucella ovis ATCC 25840] gi|161334972|gb|ABX61277.1| ribonuclease PH [Brucella canis ATCC 23365] gi|163673165|gb|ABY37276.1| ribonuclease PH [Brucella suis ATCC 23445] gi|189018995|gb|ACD71717.1| Ribonuclease PH [Brucella abortus S19] gi|225618368|gb|EEH15411.1| ribonuclease PH [Brucella ceti str. Cudo] gi|237789479|gb|EEP63689.1| ribonuclease PH [Brucella abortus str. 2308 A] gi|255998795|gb|ACU47194.1| ribonuclease PH [Brucella microti CCM 4915] gi|260096553|gb|EEW80429.1| ribonuclease PH [Brucella abortus NCTC 8038] gi|260156708|gb|EEW91788.1| ribonuclease PH [Brucella suis bv. 4 str. 40] gi|260669570|gb|EEX56510.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292] gi|260671407|gb|EEX58228.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260676136|gb|EEX62957.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870] gi|260874577|gb|EEX81646.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68] gi|260916912|gb|EEX83773.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260919983|gb|EEX86636.1| tRNA nucleotidyltransferase [Brucella ceti B1/94] gi|260923262|gb|EEX89830.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1] gi|261293669|gb|EEX97165.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1] gi|261296053|gb|EEX99549.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94] gi|261300267|gb|EEY03764.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33] gi|261303640|gb|EEY07137.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10] gi|261739271|gb|EEY27267.1| ribonuclease PH [Brucella sp. F5/99] gi|261741252|gb|EEY29178.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513] gi|261745816|gb|EEY33742.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686] gi|262551829|gb|EEZ07819.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1] gi|264660097|gb|EEZ30358.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1] gi|264661943|gb|EEZ32204.1| tRNA nucleotidyltransferase [Brucella sp. 83/13] gi|294820160|gb|EFG37159.1| ribonuclease PH [Brucella sp. NVSL 07-0026] gi|297174734|gb|EFH34081.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196] gi|306275253|gb|EFM57003.1| ribonuclease PH [Brucella sp. BO1] gi|306287398|gb|EFM58878.1| ribonuclease PH [Brucella sp. BO2] gi|306405318|gb|EFM61593.1| ribonuclease PH [Brucella sp. NF 2653] Length = 238 Score = 318 bits (815), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 151/239 (63%), Positives = 188/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T Sbjct: 1 MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG WVALH+CL+ ME ++ +VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFVMT G IVE+QG+AE FS++ F A++ LA+ I L+ LQK ++ Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238 >gi|17988058|ref|NP_540692.1| ribonuclease PH [Brucella melitensis bv. 1 str. 16M] gi|225851706|ref|YP_002731939.1| ribonuclease PH [Brucella melitensis ATCC 23457] gi|256045962|ref|ZP_05448834.1| ribonuclease PH [Brucella melitensis bv. 1 str. Rev.1] gi|256112675|ref|ZP_05453596.1| ribonuclease PH [Brucella melitensis bv. 3 str. Ether] gi|256264784|ref|ZP_05467316.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|260563245|ref|ZP_05833731.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|265992375|ref|ZP_06104932.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265994118|ref|ZP_06106675.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether] gi|21759402|sp|Q8YEV2|RNPH_BRUME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808582|sp|C0RGM7|RNPH_BRUMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|17983807|gb|AAL52956.1| ribonuclease ph [Brucella melitensis bv. 1 str. 16M] gi|225640071|gb|ACN99984.1| ribonuclease PH [Brucella melitensis ATCC 23457] gi|260153261|gb|EEW88353.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|262765099|gb|EEZ11020.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263003441|gb|EEZ15734.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|263095193|gb|EEZ18862.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|326408195|gb|ADZ65260.1| ribonuclease PH [Brucella melitensis M28] gi|326537910|gb|ADZ86125.1| ribonuclease PH [Brucella melitensis M5-90] Length = 238 Score = 318 bits (815), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 151/239 (63%), Positives = 188/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T Sbjct: 1 MRPSKRAADEMRTISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG WVALH+CL+ ME ++ +VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFVMT G IVE+QG+AE FS++ F A++ LA+ I L+ LQK ++ Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238 >gi|23501084|ref|NP_697211.1| ribonuclease PH [Brucella suis 1330] gi|38258602|sp|Q8G2Y5|RNPH_BRUSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|23346953|gb|AAN29126.1| ribonuclease PH [Brucella suis 1330] Length = 238 Score = 317 bits (813), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 151/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T Sbjct: 1 MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+QEIQR IGR+LR+VVD+ ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRFIGRSLRAVVDMQALGEMQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG WVALH+CL+ ME ++ +VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFVMT G IVE+QG+AE FS++ F A++ LA+ I L+ LQK ++ Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238 >gi|239831019|ref|ZP_04679348.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301] gi|239823286|gb|EEQ94854.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301] Length = 238 Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 148/239 (61%), Positives = 190/239 (79%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R +SK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T Sbjct: 1 MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG WVALH+CL+ ME ++ +VLK H+AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHIAAISCGIYEGEPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFVMT G IVE+QG+AE A FS++ F +++ LA+ I L+ LQK ++ Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFASLMKLARGGIDRLVSLQKMAVA 238 >gi|153007527|ref|YP_001368742.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188] gi|166228300|sp|A6WVA9|RNPH_OCHA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|151559415|gb|ABS12913.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188] Length = 238 Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 148/239 (61%), Positives = 189/239 (79%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R +SK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T Sbjct: 1 MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG WVALH+CL+ ME ++ +VLK H+AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHIAAISCGIYEGEPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFVMT G IVE+QG+AE A FS++ F ++ LA+ I L+ LQK ++ Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFANLMKLARGGIDRLVSLQKMAVA 238 >gi|110636340|ref|YP_676548.1| ribonuclease PH [Mesorhizobium sp. BNC1] gi|122965408|sp|Q11B42|RNPH_MESSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110287324|gb|ABG65383.1| RNAse PH [Chelativorans sp. BNC1] Length = 238 Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 150/239 (62%), Positives = 187/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ ++MR IS R VSK+AEGSCLV+FGDTH+L TA+LEEKVP W+RN+ GW+T Sbjct: 1 MRPSRRQPDEMRAISFERGVSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA SG+QGGR+ EIQR++GR+LRSV+DL ALG QI +DCDV+Q Sbjct: 61 AEYGMLPRSTGERMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VALHDCL M+ + +VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGFVALHDCLSWMQ-ARQMVTVERVLKDHVAAISCGIYDGTPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G IVE+QG+AE A F+++ F +L LA+ I L++LQK +S Sbjct: 180 EDSAAETDANFVMTGKGGIVEIQGTAEGAPFTEEEFHELLRLARKGIFRLVELQKMAVS 238 >gi|13473880|ref|NP_105448.1| ribonuclease PH [Mesorhizobium loti MAFF303099] gi|21759410|sp|Q98DN6|RNPH_RHILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|14024631|dbj|BAB51234.1| ribonuclease PH [Mesorhizobium loti MAFF303099] Length = 238 Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 152/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+ GW+T Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG WVAL+DCL+ ME +S+VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMASVSKVLKDHVAAISCGIHDGQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT G IVE+QG+AE FS+D F ++ LAK I L+ LQ+ ++ Sbjct: 180 EDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEDQFAELMGLAKKGIQRLVSLQQMAVA 238 >gi|260463468|ref|ZP_05811668.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075] gi|259030793|gb|EEW32069.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075] Length = 238 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 151/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+ GW+T Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG WVAL+DCL+ ME +S+VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMTSVSKVLKDHVAAISCGIHDGQPVIDLDYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ DANFVMT G IVE+QG+AE FS+ F ++ LAK I L+ LQ+ ++ Sbjct: 180 EDSSAGTDANFVMTGKGGIVEIQGTAEGEPFSEGQFADLMGLAKKGIQRLVSLQQMAVA 238 >gi|319780511|ref|YP_004139987.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166399|gb|ADV09937.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 238 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 150/239 (62%), Positives = 187/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+ GW+T Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG WVAL+DCL+ ME +++VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMASVAKVLKDHVAAISCGIHDGQPVIDLDYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT G IVE+QG+AE FS++ F ++ LAK I L+ LQ+ ++ Sbjct: 180 EDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEEQFADLMGLAKKGIQRLVSLQQMAVA 238 >gi|254472318|ref|ZP_05085718.1| ribonuclease PH [Pseudovibrio sp. JE062] gi|211958601|gb|EEA93801.1| ribonuclease PH [Pseudovibrio sp. JE062] Length = 239 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 144/234 (61%), Positives = 184/234 (78%), Gaps = 1/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R +MR +SL R V+K+AEGSCL+KFGDTH+L TA+LEE+VP W+R GW+TA Sbjct: 3 RPSKRTPEEMRPVSLERGVAKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGQNRGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R++RE+ +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQA Sbjct: 63 EYGMLPRATHDRMRRESSAGKQSGRTQEIQRLIGRSLRAVVDLGALGERQITVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVALHDCL+ ME + + +VLK H+AAISCG+ G P+ DLDY E Sbjct: 123 DGGTRTASITGAWVALHDCLKWME-ARDMVKTDKVLKDHIAAISCGIYEGTPVADLDYAE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS+ D DANFVMT G IVE+QG+AE FS++ ++ LAK I+ L++LQK Sbjct: 182 DSSADTDANFVMTGKGGIVEIQGTAEGEPFSEEELGQLMGLAKQSISKLVELQK 235 >gi|154254011|ref|YP_001414835.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1] gi|171769691|sp|A7HZ45|RNPH_PARL1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|154157961|gb|ABS65178.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1] Length = 238 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 146/239 (61%), Positives = 184/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +MR +S V+K+AEGSCLV+FGDTH+L TA+LEE+VP +++ GW+T Sbjct: 1 MRPSGRQPQEMRTVSFEPGVAKHAEGSCLVRFGDTHVLCTASLEERVPPFLKGGGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA G+Q GR+QEIQR++GR+LRSVVDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRSTHERMRREAAQGKQSGRTQEIQRLVGRSLRSVVDLKALGERQISVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALH C++ M + + VLK HVAAISCG+ G P+VDLDY Sbjct: 121 ADGGTRTASITGAWVALHQCIEWMR--ARSMISAPVLKDHVAAISCGIYQGVPVVDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D DANFV+T G I E+QG+AE FS + F ++L LAK IADL++ QK+ +S Sbjct: 179 EDSTADTDANFVITGKGGICEIQGTAEGEPFSDEEFLSLLALAKTSIADLVRRQKEAVS 237 >gi|209883567|ref|YP_002287424.1| ribonuclease PH [Oligotropha carboxidovorans OM5] gi|226736922|sp|B6JCH9|RNPH_OLICO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|209871763|gb|ACI91559.1| ribonuclease PH [Oligotropha carboxidovorans OM5] Length = 238 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 146/235 (62%), Positives = 182/235 (77%), Gaps = 1/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N++R +SL R V KYAEGSC+VKFGDT +L TATLEE++P W++ GW+T Sbjct: 1 MRPSGRAPNELRPVSLERGVVKYAEGSCMVKFGDTRVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T RV+REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATHERVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCLQ M+ N + VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLQWMK-ARNMLKNDNVLRDNVAAISCGIYNGTPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + DANFVMT G +VEVQG+AER FSQ+ F ++ LA++ I L++LQK Sbjct: 180 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQEEFLQLMALAQNGIGRLVELQK 234 >gi|299133261|ref|ZP_07026456.1| ribonuclease PH [Afipia sp. 1NLS2] gi|298593398|gb|EFI53598.1| ribonuclease PH [Afipia sp. 1NLS2] Length = 238 Score = 308 bits (789), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 145/235 (61%), Positives = 183/235 (77%), Gaps = 1/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSGRAPDELRPVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +RV+REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATHDRVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCLQ M+ N + VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLQWMK-ARNMLKNDNVLRDNVAAISCGIHNGTPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + DANFVMT G +VEVQG+AER FSQD F ++ LA+ + L++LQK Sbjct: 180 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLKLMALAQSGVGRLVELQK 234 >gi|75674392|ref|YP_316813.1| ribonuclease PH [Nitrobacter winogradskyi Nb-255] gi|123614308|sp|Q3SW80|RNPH_NITWN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|74419262|gb|ABA03461.1| RNAse PH [Nitrobacter winogradskyi Nb-255] Length = 237 Score = 308 bits (789), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 146/239 (61%), Positives = 183/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+QGGR+ EIQR+IGR+LR+ VDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC+ M+ + + VL+G+VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARNMLKAGVLRGNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFVMT G I+EVQG+AE+ FS D F A++ LAK +A L+ LQK ++ Sbjct: 179 EDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237 >gi|90420650|ref|ZP_01228556.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1] gi|90334941|gb|EAS48702.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1] Length = 241 Score = 307 bits (786), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 145/238 (60%), Positives = 186/238 (78%), Gaps = 1/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R S++AEGSCLV+FGDTH+L TA+LEE+VP W++N+ GW+T Sbjct: 1 MRPSKRAFDELRPVSLERNYSRHAEGSCLVRFGDTHVLCTASLEERVPGWLKNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R++REA SG+Q GR+QEIQR++GR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGDRMRREAASGKQSGRTQEIQRLVGRSLRAVVDLQALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VAL DCL M ++VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGYVALADCLAWMGQ-RAMVDPAKVLKDHVAAISCGIYKGEPVLDLDYP 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + DANFVMT +G IVE+QG+AE FSQD F +L+LA+ I DL+ +Q+ I Sbjct: 180 EDSAAETDANFVMTGAGGIVEIQGTAEGTPFSQDEFLKLLDLARKGINDLVGMQRQAI 237 >gi|85714061|ref|ZP_01045050.1| ribonuclease PH [Nitrobacter sp. Nb-311A] gi|85699187|gb|EAQ37055.1| ribonuclease PH [Nitrobacter sp. Nb-311A] Length = 237 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 143/239 (59%), Positives = 183/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+QGGR+ EIQR+IGR+LR+ +DL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAIDLEALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC+ M+ + + VL+G+VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARDMLKASVLRGNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFVMT G I+EVQG+AE+ FS D F A++ LAK +A L+ LQK ++ Sbjct: 179 EDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237 >gi|92115783|ref|YP_575512.1| ribonuclease PH [Nitrobacter hamburgensis X14] gi|122418904|sp|Q1QRU5|RNPH_NITHX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91798677|gb|ABE61052.1| RNAse PH [Nitrobacter hamburgensis X14] Length = 237 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 146/239 (61%), Positives = 184/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+QGGR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC+ M+ N + S VL+ +VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCIGWMK-ARNMIKTS-VLRDNVAAVSCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFVMT G I+EVQG+AE+ FSQD F A+L LAK +A L+ LQK ++ Sbjct: 179 EDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALLALAKKGVARLVDLQKMAVA 237 >gi|118593717|ref|ZP_01551092.1| ribonuclease PH [Stappia aggregata IAM 12614] gi|118433727|gb|EAV40389.1| ribonuclease PH [Stappia aggregata IAM 12614] Length = 237 Score = 305 bits (781), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 144/238 (60%), Positives = 187/238 (78%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R GW+T Sbjct: 1 MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VV+L ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVNLEALGENQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC++ M+ + +VLK H+AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALRDCIEWMK--ARDMVSGEVLKDHIAAISCGIYEGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST + DANFV+T +G IVE+QG+AE A FS++ F ++ LAK I L+ LQK I Sbjct: 179 EDSTAETDANFVLTGAGGIVEIQGTAEGAPFSEEEFGKLMGLAKLGIGKLVDLQKMAI 236 >gi|328541647|ref|YP_004301756.1| ribonuclease PH [polymorphum gilvum SL003B-26A1] gi|326411399|gb|ADZ68462.1| Ribonuclease PH [Polymorphum gilvum SL003B-26A1] Length = 237 Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 146/235 (62%), Positives = 183/235 (77%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R + GW+T Sbjct: 1 MRPSKRDADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R++REA G+Q GR+QEIQR+IGR+LR+VVDL ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMRREASVGKQSGRTQEIQRLIGRSLRAVVDLEALGEYQISVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC++ M + VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALRDCIEWMR--ARDMVTKPVLKDHVAAISCGIYKGTPVLDLDYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + DANFV+T +G IVE+QG+AE A F++D F A+L LAK I L+ LQK Sbjct: 179 EDSAAETDANFVLTGTGGIVEIQGTAEGAPFTEDEFAALLGLAKKGIGRLVDLQK 233 >gi|307943385|ref|ZP_07658729.1| ribonuclease PH [Roseibium sp. TrichSKD4] gi|307773015|gb|EFO32232.1| ribonuclease PH [Roseibium sp. TrichSKD4] Length = 237 Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 146/235 (62%), Positives = 186/235 (79%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R + GW+T Sbjct: 1 MRPSKRANDELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLEALGECQISVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+WVAL DC++ M+ + VLK H+AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGSWVALRDCIEWMK--ARDMVKKDVLKDHIAAISCGIHDGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST + DANFVMT SG IVE+QG+AE A FS++ F ++ LAK I L+ LQK Sbjct: 179 EDSTAETDANFVMTGSGGIVEIQGTAEGAPFSEEEFGQLMGLAKAGIGRLVDLQK 233 >gi|86747551|ref|YP_484047.1| ribonuclease PH [Rhodopseudomonas palustris HaA2] gi|123099251|sp|Q2J324|RNPH_RHOP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|86570579|gb|ABD05136.1| RNAse PH [Rhodopseudomonas palustris HaA2] Length = 237 Score = 305 bits (780), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 143/239 (59%), Positives = 183/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRTIVDLQALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCL M+ + QV++ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLAWMK--TRNMLKGQVMRDNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G IVEVQG+AE+ FSQD F A++ LA+ +A L+ LQK ++ Sbjct: 179 EDSEAETDANFVMTGDGRIVEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQKMAVA 237 >gi|316931691|ref|YP_004106673.1| ribonuclease PH [Rhodopseudomonas palustris DX-1] gi|315599405|gb|ADU41940.1| ribonuclease PH [Rhodopseudomonas palustris DX-1] Length = 237 Score = 303 bits (777), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 143/235 (60%), Positives = 181/235 (77%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCL M+ + +QVL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLNWMK--ARNMIKTQVLRDNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + DANFVMT G +VEVQG+AER FSQD F ++ LA+ +A L+ LQK Sbjct: 179 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQK 233 >gi|90421849|ref|YP_530219.1| ribonuclease PH [Rhodopseudomonas palustris BisB18] gi|122477603|sp|Q21CI6|RNPH_RHOPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|90103863|gb|ABD85900.1| RNAse PH [Rhodopseudomonas palustris BisB18] Length = 239 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 144/240 (60%), Positives = 184/240 (76%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSC+VKFGDTH+L TATLE+++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRATVDLQALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-LSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGAWVAL DC+ M+ N F+ + VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCIGWMK-TRNMFKGTAPVLRDNVAAISCGIYNGTPVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFVMT G I+EVQG+AE+ FSQD F A++ LAK +A L+ LQK ++ Sbjct: 180 AEDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAKKGVARLVDLQKMAVA 239 >gi|254502638|ref|ZP_05114789.1| ribonuclease PH [Labrenzia alexandrii DFL-11] gi|222438709|gb|EEE45388.1| ribonuclease PH [Labrenzia alexandrii DFL-11] Length = 272 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 147/238 (61%), Positives = 184/238 (77%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R GW+T Sbjct: 36 MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNKGWVT 95 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG QI +DCDVIQ Sbjct: 96 AEYGMLPRATGSRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLQALGEVQISVDCDVIQ 155 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL DC++ M+ + VL H+AAISCG+ P++DLDY Sbjct: 156 ADGGTRTAAITGAWVALRDCVEWMK--ARDMVSGDVLTDHIAAISCGIYESTPVLDLDYD 213 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST + DANFVMT SG IVE+QG+AE FS+D F ++NLAK I L+ LQK I Sbjct: 214 EDSTAETDANFVMTGSGGIVEIQGTAEGKPFSEDEFGQLMNLAKAGIKRLVDLQKMAI 271 >gi|39933406|ref|NP_945682.1| ribonuclease PH [Rhodopseudomonas palustris CGA009] gi|192288763|ref|YP_001989368.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1] gi|61215953|sp|Q6NCY8|RNPH_RHOPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736930|sp|B3Q968|RNPH_RHOPT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|39647252|emb|CAE25773.1| ribonuclease PH [Rhodopseudomonas palustris CGA009] gi|192282512|gb|ACE98892.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1] Length = 237 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 143/235 (60%), Positives = 180/235 (76%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCL M+ + QVL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLNWMK--ARNMIKGQVLRDNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + DANFVMT G +VEVQG+AER FSQD F ++ LA+ +A L+ LQK Sbjct: 179 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQK 233 >gi|114705078|ref|ZP_01437986.1| ribonuclease PH [Fulvimarina pelagi HTCC2506] gi|114539863|gb|EAU42983.1| ribonuclease PH [Fulvimarina pelagi HTCC2506] Length = 240 Score = 300 bits (769), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 139/240 (57%), Positives = 187/240 (77%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MRE+SLT V+++AEGSCLVKFG+T +L TA+LEE++P W++N+ GW+T Sbjct: 1 MRPSKRPADSMREVSLTTGVNRHAEGSCLVKFGETQVLCTASLEERIPPWLKNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R++REA +G+QGGR+ EIQR+IGR+LR+VVD+ ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGDRMRREASAGKQGGRTVEIQRLIGRSLRAVVDMGALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL +CL+ ME + Q VLKGHVAA+SCG+ P++DLDY Sbjct: 121 ADGGTRTASITGGYVALAECLKWME-ARSMCQRKNVLKGHVAAVSCGIYKNEPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + DANFVMT +G IVE+QG+AE FS++ F ++ LAK I +L++ Q + + Sbjct: 180 EDSVAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTKLMALAKKGIGELVEAQTAALGD 239 >gi|91974875|ref|YP_567534.1| ribonuclease PH [Rhodopseudomonas palustris BisB5] gi|123735818|sp|Q13E56|RNPH_RHOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91681331|gb|ABE37633.1| RNAse PH [Rhodopseudomonas palustris BisB5] Length = 237 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 141/239 (58%), Positives = 181/239 (75%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRAIVDLQALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCL M+ + VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLGWMK--TRNMIKGTVLRDNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G I+EVQG+AE+ FSQD F A++ LA+ + L+ LQK ++ Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVTRLVDLQKMAVA 237 >gi|115522381|ref|YP_779292.1| ribonuclease PH [Rhodopseudomonas palustris BisA53] gi|115516328|gb|ABJ04312.1| RNAse PH [Rhodopseudomonas palustris BisA53] Length = 243 Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 139/239 (58%), Positives = 182/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TA+LEE++P W++ GW+T Sbjct: 7 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTASLEERLPPWLKGQGRGWVT 66 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +RE+ +G+Q GR+ EIQR+IGR+LR+ VDL A+G RQI +DCDV+Q Sbjct: 67 AEYGMLPRATHERTRRESAAGKQSGRTVEIQRLIGRSLRASVDLEAMGERQITVDCDVLQ 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL DCL M+ + ++VL+ +VAAISCG+ G P++DLDY Sbjct: 127 ADGGTRTAAITGAWVALADCLAWMK--ARNMIKAKVLRDNVAAISCGIYNGTPVLDLDYA 184 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G I+EVQG+AE+ FSQD F A++ LA+ +A L+ LQ ++ Sbjct: 185 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQNMAVA 243 >gi|148251804|ref|YP_001236389.1| ribonuclease PH [Bradyrhizobium sp. BTAi1] gi|166228266|sp|A5E8I9|RNPH_BRASB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|146403977|gb|ABQ32483.1| RNAse PH [Bradyrhizobium sp. BTAi1] Length = 237 Score = 298 bits (762), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 137/239 (57%), Positives = 183/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GWIT Sbjct: 1 MRPSRRAPDELRPVSLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR+ +DL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC++ M+ + ++VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCIKWMK--TRNMLKTEVLRANVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G I+EVQG+AE+ F++ F A++ LA+ +A L+ LQK ++ Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFTEAEFLALMALARKGVARLVDLQKMAVA 237 >gi|27375785|ref|NP_767314.1| ribonuclease PH [Bradyrhizobium japonicum USDA 110] gi|61216053|sp|Q89WK4|RNPH_BRAJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|27348923|dbj|BAC45939.1| Ribonuclease PH [Bradyrhizobium japonicum USDA 110] Length = 237 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 137/235 (58%), Positives = 179/235 (76%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GW+T Sbjct: 1 MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++++L ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATSERTRREASAGKQSGRTVEIQRLIGRSLRTIINLEALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC+ M+ + + VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARNMVKANVLRDNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS DANFVMT G I+EVQG+AER F+QD A++ LA+ IA L+ LQK Sbjct: 179 EDSEAQTDANFVMTGDGRIIEVQGTAEREPFTQDELLALMALAQKGIARLVDLQK 233 >gi|154246476|ref|YP_001417434.1| ribonuclease PH [Xanthobacter autotrophicus Py2] gi|226736952|sp|A7IID4|RNPH_XANP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|154160561|gb|ABS67777.1| ribonuclease PH [Xanthobacter autotrophicus Py2] Length = 237 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 137/235 (58%), Positives = 179/235 (76%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R V ++AEGSCLVKFGDTH+L +ATLEE++P W++ GW+T Sbjct: 1 MRPSKRAADEMRAVSFERGVMRHAEGSCLVKFGDTHVLVSATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R +RE+ +G+Q GR+QEIQR+IGR+LRSV DL ALG +QI +DCDV+Q Sbjct: 61 AEYSMLPRATHDRTRRESTTGKQSGRTQEIQRLIGRSLRSVTDLVALGEKQITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAW+AL+DCL M S ++ LK HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAWIALYDCLSWMRQRSMVKEIP--LKDHVAAVSCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + DANFVMT +G IVE+QG+AE+ FSQD +L+LA+ + L+ LQK Sbjct: 179 EDSVAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLGLLSLARSGVEKLVGLQK 233 >gi|300024890|ref|YP_003757501.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888] gi|299526711|gb|ADJ25180.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888] Length = 237 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 138/235 (58%), Positives = 179/235 (76%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +++R +S+ R VSK+AEGSCL+KFGDTH+L TA+LEE++P W++ GW+T Sbjct: 1 MRPSKRKPDELRRVSIERAVSKHAEGSCLIKFGDTHVLCTASLEERLPQWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG GR+QEIQR++GRALR+VVDL LG RQI +DCDVIQ Sbjct: 61 AEYSMLPRATHERTRREVTSGHPSGRTQEIQRLVGRALRAVVDLPKLGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC+Q M+ VL+ HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCIQWMK--MRDMVKDGVLRDHVAAVSCGIYKGDPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D+NFVMT +G IVE+QG+AE F+++ F +L LAK I +L++LQK Sbjct: 179 EDSNADADSNFVMTGTGGIVEIQGTAETTPFTEERFGDLLTLAKKGIGELVQLQK 233 >gi|304392746|ref|ZP_07374686.1| ribonuclease PH [Ahrensia sp. R2A130] gi|303295376|gb|EFL89736.1| ribonuclease PH [Ahrensia sp. R2A130] Length = 239 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 141/233 (60%), Positives = 181/233 (77%), Gaps = 2/233 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR ++MR +++ R SK+AEGSCL+KFGDTH+L TA+LEE+VP W+R GW+TA Sbjct: 5 RPSGRAPDEMRAVTIERGFSKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGAGKGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ ALG RQI +DCDVIQA Sbjct: 65 EYGMLPRSTGGRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMKALGERQISLDCDVIQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL +CL M+ + VL +VAAISCG+ G P++DLDY E Sbjct: 125 DGGTRTASITGAYVALKECLDWMQ--ARSMIGGDVLIDNVAAISCGIYEGTPVLDLDYDE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 DS D DANFVMT G IVE+QG+AE A FS++ F A+++LA I +L+ LQ Sbjct: 183 DSEADTDANFVMTGKGGIVEIQGTAEAAPFSREEFSALMDLASKGIGELVDLQ 235 >gi|158425913|ref|YP_001527205.1| ribonuclease PH [Azorhizobium caulinodans ORS 571] gi|172047841|sp|A8HV93|RNPH_AZOC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|158332802|dbj|BAF90287.1| ribonuclease PH [Azorhizobium caulinodans ORS 571] Length = 238 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 142/242 (58%), Positives = 180/242 (74%), Gaps = 10/242 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R V ++AEGSCLVKFGDTH+L ATLEE++P W++ GW+T Sbjct: 1 MRPSRRANDEMRAVSFERGVLRHAEGSCLVKFGDTHVLVAATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA +G+Q GR+QEIQR+IGR+LRSV DL LG RQI +DCDV+Q Sbjct: 61 AEYSMLPRATLERTRREATTGKQSGRTQEIQRLIGRSLRSVTDLVGLGERQITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV----LKGHVAAISCGMLCGYPIVD 176 ADGGTRTAAITGAWVALHDCL M +Q S + LK +VAAISCG+ G P++D Sbjct: 121 ADGGTRTAAITGAWVALHDCLNWM------YQRSMLKTIPLKENVAAISCGIHEGTPVLD 174 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 LDY EDS + DANFVMT +G IVE+QG+AE+ FSQD ++L LA+ + +L++LQK Sbjct: 175 LDYAEDSKAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLSLLALARKGVGELVELQKQ 234 Query: 237 VI 238 I Sbjct: 235 AI 236 >gi|146337341|ref|YP_001202389.1| ribonuclease PH [Bradyrhizobium sp. ORS278] gi|166228267|sp|A4YJR3|RNPH_BRASO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|146190147|emb|CAL74139.1| RNase PH [Bradyrhizobium sp. ORS278] Length = 237 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 137/239 (57%), Positives = 182/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +SL R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GWIT Sbjct: 1 MRPSRRAPDEMRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR+ +DL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC++ M+ + ++VL+ +VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCIRWMK--ARNMIKTEVLRTNVAAVSCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G I+EVQG+AE+ FS+ F A++ LA+ + L+ LQK ++ Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSEAEFLALMALARKGVGRLVDLQKMAVA 237 >gi|323137091|ref|ZP_08072171.1| ribonuclease PH [Methylocystis sp. ATCC 49242] gi|322397852|gb|EFY00374.1| ribonuclease PH [Methylocystis sp. ATCC 49242] Length = 238 Score = 290 bits (743), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 134/240 (55%), Positives = 178/240 (74%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R V++YAEGSCLVKFG+TH+L A+LE+K P W+R GW+T Sbjct: 1 MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ +G+ GR+QEIQR+IGR+LR+V +L A+G RQI+IDCDVIQ Sbjct: 61 AEYSMLPRATHTRTRRESSAGKLTGRTQEIQRLIGRSLRAVTNLPAMGERQIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+AL DC + M S L+ HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWLALRDCFEWMR--SRSIIKDNPLRDHVAAVSCGIFNGTPVIDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST + DANFV+T SG +VE+Q +AE A FS D ++L LA+ +ADL+ LQK +++ Sbjct: 179 EDSTAETDANFVITGSGGLVEIQATAEVAVFSPDELTSLLTLAQGGVADLVALQKAALAS 238 >gi|298293788|ref|YP_003695727.1| ribonuclease PH [Starkeya novella DSM 506] gi|296930299|gb|ADH91108.1| ribonuclease PH [Starkeya novella DSM 506] Length = 237 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 136/240 (56%), Positives = 180/240 (75%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ ++MR +S R V ++AEGSCLVKFG+TH+L ATLEE++P W++ GW+T Sbjct: 1 MRPSRRQPDEMRAVSFERGVLRHAEGSCLVKFGETHVLVAATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +RE +G+ GR+ EIQR+IGR+LR+VVDL LG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATHERTRREVTAGKPSGRTHEIQRLIGRSLRTVVDLEKLGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGAW+ALHDCL M+ + L+ + L+ H+AA+SCG++ G P +DLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLSWMK---TRGMLATIPLRDHIAAVSCGIVDGEPRLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ D NFVMT +G VE+QG+AE+ F++D F AML LA+ +A L+ LQK +S Sbjct: 178 VEDSSAHTDVNFVMTGTGGFVEIQGTAEKTPFTEDEFGAMLGLARKGVAKLVDLQKLAVS 237 >gi|188579737|ref|YP_001923182.1| ribonuclease PH [Methylobacterium populi BJ001] gi|226736916|sp|B1ZJ73|RNPH_METPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|179343235|gb|ACB78647.1| ribonuclease PH [Methylobacterium populi BJ001] Length = 237 Score = 287 bits (735), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 137/239 (57%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC M + LK HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T G IVEVQG+AE FS+ F +L LAK IA+L++LQ+ I+ Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAEMEPFSEAQFIELLALAKGGIANLVELQRKAIA 237 >gi|312113394|ref|YP_004010990.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100] gi|311218523|gb|ADP69891.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100] Length = 237 Score = 287 bits (735), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 136/235 (57%), Positives = 174/235 (74%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ +R +S R S +AEGSCL+KFG+TH+L TA+LE++VP W++ GWIT Sbjct: 1 MRPSKRQAGDLRPVSFQRAFSHHAEGSCLIKFGNTHVLCTASLEDRVPPWLKGQGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G Q GRSQEIQR+IGR+LR+VVDL ALG RQI++DCDV+Q Sbjct: 61 AEYGMLPRATSDRTRREATTGHQSGRSQEIQRLIGRSLRAVVDLQALGERQIMVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC Q M + + +K +VAAISCG+ G ++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCFQWMR--ARDMLRGEPMKDNVAAISCGIYKGEAVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + DANFV T G IVE+Q +AE+ FS++ + LAK IA+L+ LQK Sbjct: 179 EDSDAEADANFVFTGKGQIVEIQATAEKGAFSEERMAELTALAKKGIAELVNLQK 233 >gi|296447435|ref|ZP_06889360.1| ribonuclease PH [Methylosinus trichosporium OB3b] gi|296255055|gb|EFH02157.1| ribonuclease PH [Methylosinus trichosporium OB3b] Length = 237 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 135/239 (56%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R V++YAEGSCLVKFG+TH+L A+LE+K P W+R GW+T Sbjct: 1 MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ SG+ GR+QEIQR+IGR+LR+V L ALG RQ+++DCDV+Q Sbjct: 61 AEYAMLPRATHTRTRRESSSGKPSGRTQEIQRLIGRSLRAVTHLPALGERQVVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GAW+ALHDC Q M S L+ HVAA+SCG+ P++DLDYG Sbjct: 121 ADGGTRTAAISGAWLALHDCFQWMR--SRSIIKENPLRDHVAAVSCGVCDAGPVIDLDYG 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST DANFV+T G +VEVQ +AE A F++ AML+LA+ I LI++QK I+ Sbjct: 179 EDSTAKTDANFVITGGGGLVEVQSTAEAAVFTEADLSAMLSLARAGIGKLIEMQKAAIA 237 >gi|254559085|ref|YP_003066180.1| ribonuclease PH [Methylobacterium extorquens DM4] gi|254266363|emb|CAX22127.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Methylobacterium extorquens DM4] Length = 237 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 136/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC M + LK HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFV+T G IVEVQG+AE F+ + F +L LAK +A L++LQ+ I+ Sbjct: 179 EDSAADTDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237 >gi|220924628|ref|YP_002499930.1| ribonuclease PH [Methylobacterium nodulans ORS 2060] gi|254808593|sp|B8IFR7|RNPH_METNO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|219949235|gb|ACL59627.1| ribonuclease PH [Methylobacterium nodulans ORS 2060] Length = 237 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 135/238 (56%), Positives = 176/238 (73%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++R+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GWIT Sbjct: 1 MRPSKRAPEELRKVTLERGVARYAEGSCLVTFGETRVLCTASLEERGPSWLRGSGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE +G+ GR+QEIQR+IGR+LR+VV+L A+G RQI+IDCDV+Q Sbjct: 61 AEYAMLPRATHERNRREVNAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALH+C M S ++ HVAA+SCG+ G PI+DLDY Sbjct: 121 ADGGTRTASITGAWVALHECFTWMR--SRSIISVDPMRDHVAAVSCGIHKGTPILDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + DANFV+T SG IVEVQG+AE FS++ F +L LAK +A L+ LQK + Sbjct: 179 EDSAAETDANFVITGSGGIVEVQGTAEVTPFSEEEFLGLLRLAKSGVAQLVALQKQAV 236 >gi|170742381|ref|YP_001771036.1| ribonuclease PH [Methylobacterium sp. 4-46] gi|226736918|sp|B0UP55|RNPH_METS4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|168196655|gb|ACA18602.1| ribonuclease PH [Methylobacterium sp. 4-46] Length = 237 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 134/238 (56%), Positives = 177/238 (74%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R+++L + V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAPDELRKVTLEKGVARYAEGSCLVTFGETKVLCTASLEERGPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE +G+ GR+QEIQR+IGR+LR+VV+L A+G RQI++DCDV+Q Sbjct: 61 AEYAMLPRATHERNRREVTAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALH+C M ++ HVAAISCG+ G PI+DLDY Sbjct: 121 ADGGTRTASITGAWVALHECFTWMR--GRSIISVDPMRDHVAAISCGIHKGIPILDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D DANFV+T SG IVEVQG+AE A FS++ F +L LAK +A L+ LQK + Sbjct: 179 EDSAADTDANFVITGSGGIVEVQGTAEIAPFSEEQFLGLLRLAKAGVAQLVALQKQAV 236 >gi|163849851|ref|YP_001637894.1| ribonuclease PH [Methylobacterium extorquens PA1] gi|240137077|ref|YP_002961546.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Methylobacterium extorquens AM1] gi|226736915|sp|A9VZR7|RNPH_METEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|163661456|gb|ABY28823.1| ribonuclease PH [Methylobacterium extorquens PA1] gi|240007043|gb|ACS38269.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Methylobacterium extorquens AM1] Length = 237 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 135/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC M + LK HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T G IVEVQG+AE F+ + F +L LAK +A L++LQ+ I+ Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237 >gi|218528482|ref|YP_002419298.1| ribonuclease PH [Methylobacterium chloromethanicum CM4] gi|254808592|sp|B7L092|RNPH_METC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|218520785|gb|ACK81370.1| ribonuclease PH [Methylobacterium chloromethanicum CM4] Length = 237 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 135/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC M + LK HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T G IVEVQG+AE F+ + F +L LAK +A L++LQ+ I+ Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAELEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237 >gi|217978304|ref|YP_002362451.1| ribonuclease PH [Methylocella silvestris BL2] gi|254808594|sp|B8ERN7|RNPH_METSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|217503680|gb|ACK51089.1| ribonuclease PH [Methylocella silvestris BL2] Length = 237 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 134/239 (56%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++ R V++YAEGSCL+KFG TH+L TA+LE+K P W+R GW++ Sbjct: 1 MRPSQRAADELRPVTFERNVARYAEGSCLIKFGSTHVLCTASLEDKPPAWLRGQGRGWVS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R KRE+ +G+ GR+QEIQR+IGR+LR+V +L LG RQI IDCDV+Q Sbjct: 61 AEYAMLPRATHTRTKRESTTGKPSGRTQEIQRLIGRSLRAVTNLQGLGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVALHDCL+ M S L L+ HVAAISCG+ G ++DLDY Sbjct: 121 ADGGTRTAAITGAWVALHDCLKWMRQRSIIKDLP--LRDHVAAISCGVSNGESVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T SG +VEVQ +AE A F++ AML LA+ I L+++QK ++ Sbjct: 179 EDSAAETDANFVITGSGSLVEVQATAEGAVFTETQLTAMLALARGGITTLVEMQKAAVA 237 >gi|182677771|ref|YP_001831917.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039] gi|226736889|sp|B2IH14|RNPH_BEII9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|182633654|gb|ACB94428.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039] Length = 237 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 139/240 (57%), Positives = 173/240 (72%), Gaps = 6/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +R ++L R V++YAEGSCLVKFG TH+L TA+LE+K P W+R GW+T Sbjct: 1 MRPSKRAAQDLRPVTLERNVARYAEGSCLVKFGGTHVLCTASLEDKPPPWLRGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE++SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDV+Q Sbjct: 61 AEYAMLPRATHTRTRRESMSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTAAITGAWVALHDC + M S +F L + HVAA+SCG+ G ++DLD Sbjct: 121 ADGGTRTAAITGAWVALHDCCKWMHGRSIIKEFPLRE----HVAAVSCGIYQGEAVLDLD 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS DANFVMT G +VEVQ SAE A FS+D +L LAK IA L+ +QK I Sbjct: 177 YEEDSVAQTDANFVMTGGGALVEVQASAEGAVFSEDELSVLLALAKGGIAQLVNIQKLAI 236 >gi|84684654|ref|ZP_01012555.1| ribonuclease PH [Maritimibacter alkaliphilus HTCC2654] gi|84667633|gb|EAQ14102.1| ribonuclease PH [Rhodobacterales bacterium HTCC2654] Length = 250 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 133/239 (55%), Positives = 177/239 (74%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +++R IS+ V+K+AEGSCL+K GDTH+L TA+LEE+VP W+RNT GW+T Sbjct: 14 MRPSGRNVDELRPISIETGVTKHAEGSCLIKVGDTHVLCTASLEERVPPWLRNTGMGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 74 AEYGMLPRSTSSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRQALGERQITVDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + +S L VAA+SCG+ G P++DLDY Sbjct: 134 ADGGTRCASITGGWVALRLAVQKLMKAGDI--VSDPLIDPVAAVSCGIYAGQPVLDLDYP 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NFVMT +G ++EVQ SAE +TFS+ ++ LA+ +A+L+ QK ++ Sbjct: 192 EDSEAGVDGNFVMTGTGRLIEVQMSAEGSTFSRAQMDDLMGLAEKGVAELVAAQKAAVA 250 >gi|83313597|ref|YP_423861.1| ribonuclease PH [Magnetospirillum magneticum AMB-1] gi|82948438|dbj|BAE53302.1| RNase PH [Magnetospirillum magneticum AMB-1] Length = 241 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 136/240 (56%), Positives = 174/240 (72%), Gaps = 6/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + L VS++AEGSC+ KFGDTH+L TA++EEKVP ++RNT GW+T Sbjct: 3 MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+ EIQR+IGR+LRSV DL+A+G RQI IDCDV+Q Sbjct: 63 AEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLAAMGERQIKIDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV--LKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTA+ITGA+VALH Q + + +L + L HVAAISCG+ G ++DLD Sbjct: 123 ADGGTRTASITGAFVALHLAFQRL----VRLELLKAIPLTDHVAAISCGIYEGVAVLDLD 178 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS DANFVMT +G IVE+QG+AE FS+ F + +LA+ I L++ QK + Sbjct: 179 YPEDSNAQADANFVMTGTGGIVEIQGTAEERPFSRTQFLELTDLAEAGIRQLVEAQKKAL 238 >gi|83594970|ref|YP_428722.1| ribonuclease PH [Rhodospirillum rubrum ATCC 11170] gi|123525443|sp|Q2RN60|RNPH_RHORT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|83577884|gb|ABC24435.1| RNAse PH [Rhodospirillum rubrum ATCC 11170] Length = 240 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 136/242 (56%), Positives = 172/242 (71%), Gaps = 6/242 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R I L SK+AEGSC+ +FGDTH+L TA++EE+VP W+R GW+T Sbjct: 1 MRPSGRAVDSLRSIVLEPGYSKHAEGSCMARFGDTHVLCTASIEERVPGWMRGGGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA GRQ GR+QEIQR+IGR+LRSV DL +G QI +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRTDREAARGRQSGRTQEIQRLIGRSLRSVTDLKKIGEIQIRLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV--LKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTAAITG+WVAL+ L E K L + L HVAA+SCG+ G ++DLD Sbjct: 121 ADGGTRTAAITGSWVALYQALARFE----KLGLGALPPLTDHVAAVSCGLCDGVAVLDLD 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDST DANFV+T +G IVE+QG+AE + F+Q F +L LA+ I +L+ LQK + Sbjct: 177 YAEDSTAQADANFVLTGTGGIVEIQGTAETSPFAQAQFMELLALAQKGITELVALQKAAL 236 Query: 239 SN 240 ++ Sbjct: 237 AS 238 >gi|170749350|ref|YP_001755610.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831] gi|226736917|sp|B1M4N1|RNPH_METRJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|170655872|gb|ACB24927.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831] Length = 237 Score = 275 bits (702), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 135/239 (56%), Positives = 172/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R VS+YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAADELRPVSLERAVSRYAEGSCLVSFGNTRVLCTASLEERAPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L A+G RQI IDCDVIQ Sbjct: 61 AEYAMLPRATHERTRREVGSGKPSGRTQEIQRLIGRSLRAVTNLPAMGERQITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVALHDC M + L+ HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALHDCFAWMR--TRSIISVDPLRDHVAAVSCGLYKGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T G IVEVQG+AE F+Q+ +L LA+ L+ LQK+ I+ Sbjct: 179 EDSAAETDANFVLTGRGGIVEVQGTAEMEPFTQEQLLELLGLARAGTERLVALQKEAIA 237 >gi|46201192|ref|ZP_00055593.2| COG0689: RNase PH [Magnetospirillum magnetotacticum MS-1] Length = 239 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 136/240 (56%), Positives = 173/240 (72%), Gaps = 6/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + L VS++AEGSC+ KFGDTH+L TA++EEKVP ++RNT GW+T Sbjct: 1 MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+ EIQR+IGR+LRSV DL A+G RQI IDCDV+Q Sbjct: 61 AEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLVAMGERQIKIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV--LKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTA+ITGA+VALH Q + + +L + L HVAAISCG+ G ++DLD Sbjct: 121 ADGGTRTASITGAFVALHLAFQRL----VRLELLKAIPLTDHVAAISCGIYEGTAVLDLD 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS DANFVMT +G IVE+QG+AE FS+ F + +LA+ I L++ QK + Sbjct: 177 YPEDSNAQADANFVMTGNGGIVEIQGTAEERPFSRAQFLELTDLAEAGIRQLVEAQKKAL 236 >gi|295691344|ref|YP_003595037.1| ribonuclease PH [Caulobacter segnis ATCC 21756] gi|295433247|gb|ADG12419.1| ribonuclease PH [Caulobacter segnis ATCC 21756] Length = 238 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 129/238 (54%), Positives = 174/238 (73%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +QMR ++L V++YAEGSCL+ FG T +L TAT+EE +P W+RN GW+T Sbjct: 1 MRPSERAPDQMRAVTLETGVNRYAEGSCLISFGHTKVLVTATVEESLPGWLRNKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATHSRGRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL +++ D + + G VAA+SCG+ P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALRLATKYLLD--EGVLKTDPIVGQVAAVSCGVFNDTPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ + D+NFV+T++G IVE+Q + E+ FS+ F A+ LA+ I +L LQ+ I Sbjct: 179 EDSSAEADSNFVLTNAGDIVEIQATGEKRGFSRAEFEALFGLAEKGIGELFTLQRAAI 236 >gi|117923369|ref|YP_863986.1| ribonuclease PH [Magnetococcus sp. MC-1] gi|117607125|gb|ABK42580.1| RNAse PH [Magnetococcus sp. MC-1] Length = 243 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 131/235 (55%), Positives = 170/235 (72%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+SGR+ ++MR +++TR +K+AEGSCL+ FGDT +L TAT+EE P W+RN GW+T Sbjct: 5 LRISGRRPDEMRAVTITRHYTKHAEGSCLIAFGDTQVLCTATVEESQPRWMRNEDRGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+ EIQR+IGRA+R+VVDL ALG R I +DCDVIQ Sbjct: 65 AEYGMLPRSTNVRMGREAAKGKQSGRTLEIQRLIGRAMRAVVDLQALGKRTIWLDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+HD + + L+ HVAA+SCGM+ G P +DLDY Sbjct: 125 ADGGTRTASITGAFVAMHDAVTGL--LKAGLIRHNPLRDHVAAVSCGMVAGMPALDLDYQ 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D NFVMT +G VE+QG+AE F++ F +M LA I L++ QK Sbjct: 183 EDSRCDTDMNFVMTGAGGFVEIQGTAEGVPFTRPEFESMAALADQGIKALVQAQK 237 >gi|144897368|emb|CAM74232.1| RNase PH [Magnetospirillum gryphiswaldense MSR-1] Length = 241 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 136/238 (57%), Positives = 173/238 (72%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I L S++AEGSCL KFGDTH+L TA++EE+VP ++RNT GW+TA Sbjct: 4 RPSGRAFDQLRVIRLETGFSRHAEGSCLAKFGDTHVLCTASVEERVPPFLRNTGKGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+ EIQR+IGR+LR+V DL+A+G QI +DCDV+QA Sbjct: 64 EYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRAVTDLTAMGEMQIKLDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTA+ITGAWVALH Q + + +LS V L VAAISCG+ G ++DLDY Sbjct: 124 DGGTRTASITGAWVALHLAFQKLVEAG---KLSAVPLIDQVAAISCGIYEGQAVLDLDYP 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ DANFV+T +G IVEVQG+AE FS+D F +L LA+ + +L LQK + Sbjct: 181 EDSSAQADANFVLTGTGGIVEVQGTAEERPFSRDQFTQLLELAEKGVTELALLQKKAV 238 >gi|254491824|ref|ZP_05105003.1| ribonuclease PH [Methylophaga thiooxidans DMS010] gi|224463302|gb|EEF79572.1| ribonuclease PH [Methylophaga thiooxydans DMS010] Length = 239 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 128/239 (53%), Positives = 176/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ N++R++S+TR +K+AEGS LV+FGDT +L TA++EE++P ++R + GW+T Sbjct: 1 MRPSGRQANELRQVSITRNYTKHAEGSVLVEFGDTKVLCTASVEERIPPFLRGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA G+QGGR+ EIQR+IGR+LR+ ++L ALG R I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMQREAARGKQGGRTMEIQRLIGRSLRAAINLKALGERSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + H+ K L G VA++S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVALQDAINHL--IKTKKLKKSPLFGQVASVSVGIYNGTPVLDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ + D N VM D+G +E+QG+AE F D +ML+LA I L+ Q+D ++ Sbjct: 179 EDSSAETDMNVVMNDAGAYIELQGTAEGHAFRADELQSMLDLASHGIEQLMIKQRDALA 237 >gi|239948344|ref|ZP_04700097.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis] gi|239922620|gb|EER22644.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis] Length = 239 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KRE G+QGGR+QEIQR+IGRA+R V+DL LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKRETALGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLVIRSL--MKKRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD+NFV +G+++EVQG+AE+ FS++ F AML LAK +A+L KLQ V+ Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGVAELFKLQNQVL 236 >gi|15892898|ref|NP_360612.1| ribonuclease PH [Rickettsia conorii str. Malish 7] gi|229586977|ref|YP_002845478.1| ribonuclease PH [Rickettsia africae ESF-5] gi|238651083|ref|YP_002916941.1| ribonuclease PH [Rickettsia peacockii str. Rustic] gi|21759407|sp|Q92GZ7|RNPH_RICCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|259494127|sp|C3PP75|RNPH_RICAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|259494128|sp|C4K2U2|RNPH_RICPU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|15620088|gb|AAL03513.1| ribonuclease PH [Rickettsia conorii str. Malish 7] gi|228022027|gb|ACP53735.1| Ribonuclease PH [Rickettsia africae ESF-5] gi|238625181|gb|ACR47887.1| ribonuclease PH [Rickettsia peacockii str. Rustic] Length = 239 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+ Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236 >gi|34581401|ref|ZP_00142881.1| ribonuclease PH [Rickettsia sibirica 246] gi|28262786|gb|EAA26290.1| ribonuclease PH [Rickettsia sibirica 246] Length = 239 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKREATLGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+ Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236 >gi|288956860|ref|YP_003447201.1| ribonuclease PH [Azospirillum sp. B510] gi|288909168|dbj|BAI70657.1| ribonuclease PH [Azospirillum sp. B510] Length = 239 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 131/238 (55%), Positives = 171/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R +SL S+YAEGSC+V+FG+TH+L TA+++E VP +++NT GW+T Sbjct: 1 MRPSGRALDQLRTVSLEPGFSRYAEGSCMVRFGNTHVLCTASVDETVPRFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGRALR+V D SA+G +QI IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRTDREAAKGKQSGRTQEIQRLIGRALRAVTDRSAMGEKQIKIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH QH+ + L VAA+SCG+ G ++DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAFQHLIQIGALKTMP--LTDQVAAVSCGIYQGNAVLDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DANFV+T IVE+QG+AE + FS+ F +L LA+ + +L LQK + Sbjct: 179 EDSKAQADANFVLTGKAGIVEIQGTAEESPFSEPQFMELLALARKGVTELAALQKQAL 236 >gi|119900252|ref|YP_935465.1| ribonuclease PH [Azoarcus sp. BH72] gi|166228264|sp|A1KCM3|RNPH_AZOSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|119672665|emb|CAL96579.1| ribonuclease PH [Azoarcus sp. BH72] Length = 239 Score = 271 bits (692), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 132/240 (55%), Positives = 178/240 (74%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ N++R + LTRR +++AEGS LV+FGDT +L TA++EE VP +++ GW+T Sbjct: 1 MRPSQRQANELRPVRLTRRYTRHAEGSVLVEFGDTRVLCTASVEEAVPPFLKGKGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL+ALG RQ++IDCDV+Q Sbjct: 61 AEYGMLPRATHTRSAREAAKGKQTGRTQEIQRLIGRSLRAVVDLAALGERQVVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD L+ + + K + + VAAIS G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALHDALEGLV-AAGKLA-ANPMTDFVAAISVGIVDGVPVLDLDYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT SG I+EVQG+AE FS+ A+++LA+ I L++LQK ++ Sbjct: 179 EDSGCDTDMNVVMTGSGGIIEVQGTAEGTPFSRTELNALIDLAEAGIGRLVELQKAALAG 238 >gi|157828824|ref|YP_001495066.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933550|ref|YP_001650339.1| ribonuclease PH [Rickettsia rickettsii str. Iowa] gi|166228313|sp|A8GT33|RNPH_RICRS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043770|sp|B0BUM3|RNPH_RICRO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157801305|gb|ABV76558.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908637|gb|ABY72933.1| ribonuclease PH [Rickettsia rickettsii str. Iowa] Length = 239 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKREAALGQQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRVLKVNPLISQIAAISCGIYKGEVILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+ Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236 >gi|220936120|ref|YP_002515019.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7] gi|254808601|sp|B8GPB2|RNPH_THISH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|219997430|gb|ACL74032.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7] Length = 239 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 128/235 (54%), Positives = 170/235 (72%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+REI TRR +K+AEGS LV+FGDT +L TA+++++ P W+RN GW+T Sbjct: 1 MRPSGRQPDQLREIRFTRRFTKHAEGSVLVEFGDTRVLCTASVDDRTPPWLRNKGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+QGGR+QEIQR+IGR+LR+ VDL LG RQI +DCDV+Q Sbjct: 61 AEYGMLPRSTHERMAREAARGKQGGRTQEIQRLIGRSLRAAVDLEGLGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +VALHD + H+ K + + + G VA++S G+ G P++DLDY Sbjct: 121 ADGGTRTASISGGYVALHDAITHLMK-QGKLKRNPLF-GAVASVSVGIYQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D N VM D+ +EVQG+AE F D +ML LA+ I D+I Q+ Sbjct: 179 EDSNAETDMNVVMNDANAFIEVQGTAEGHAFRMDELNSMLALAQSGIQDIIAAQR 233 >gi|157803502|ref|YP_001492051.1| ribonuclease PH [Rickettsia canadensis str. McKiel] gi|166228312|sp|A8EY33|RNPH_RICCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157784765|gb|ABV73266.1| ribonuclease PH [Rickettsia canadensis str. McKiel] Length = 239 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 134/238 (56%), Positives = 169/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G TH++ +AT E VP ++R GW+T Sbjct: 1 MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATCETTVPPFLRGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREAV G+QGGR+QEIQR+IGRA+R V+DL LG RQIIIDCDVI Sbjct: 61 AEYGMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+++ALH ++ + S L +AAISCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYIALHLAIRLLMKKS--ILKVNPLISQIAAISCGIYKGETILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+ Sbjct: 179 EDSDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAMLKLAKVGAAELFKLQNQVL 236 >gi|224824865|ref|ZP_03697972.1| ribonuclease PH [Lutiella nitroferrum 2002] gi|224603358|gb|EEG09534.1| ribonuclease PH [Lutiella nitroferrum 2002] Length = 238 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 133/240 (55%), Positives = 176/240 (73%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + +R ++LTR +K+AEGS LV+FGDT ++ TA+++E VP +++ GW+T Sbjct: 1 MRPSSRPNDALRRVTLTRGYTKHAEGSVLVEFGDTKVICTASVDESVPGFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA SG+Q GR+QEIQR+IGR+LR+VVDL LG RQI IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLGKLGERQIQIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD + + K Q S + + VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVALHDAISGL-IAQGKLQESPI-RDFVAAVSVGVFEGRPVLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT SGH VEVQG+AE FS+ AML LA+ + +LI +QK ++ Sbjct: 179 EDSACETDMNVVMTGSGHFVEVQGTAEGVPFSRAELDAMLRLAEQGVGELIAIQKAALAG 238 >gi|114769782|ref|ZP_01447392.1| ribonuclease PH [alpha proteobacterium HTCC2255] gi|114549487|gb|EAU52369.1| ribonuclease PH [alpha proteobacterium HTCC2255] Length = 237 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 133/239 (55%), Positives = 173/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + MR I + +K+AEGSCL+K GDTH+L TA++E++ P W+RNT GW+T Sbjct: 1 MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVEDRTPPWLRNTGMGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R +REA SG+Q GR+QEIQR+IGR+LR+ +D LG RQI +DCDV+Q Sbjct: 61 AEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG W+AL + M + + L HVAA+SCG+ G PI+DLDY Sbjct: 121 ADGGTRCASITGGWIALRLAINAMIKAGDLKE--DPLTEHVAAVSCGIYGGQPILDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT S +VE+QGSAE ATF + F ++++LA+ I++LI QK IS Sbjct: 179 EDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQKAAIS 237 >gi|157964776|ref|YP_001499600.1| ribonuclease PH [Rickettsia massiliae MTU5] gi|157844552|gb|ABV85053.1| Ribonuclease PH [Rickettsia massiliae MTU5] Length = 250 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 134/238 (56%), Positives = 169/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 12 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI Sbjct: 72 AEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVKKLGERQIIIDCDVIN 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G I+DLDY Sbjct: 132 ADGGTRTAAITGSYVALHLAIRSL--MKKRVLKVNPLISQIAAISCGIYKGEAILDLDYL 189 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD+NFV +G+++EVQG+AE+ FS+ F AML LAK A+L KLQ V+ Sbjct: 190 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEGQFLAMLKLAKGGAAELFKLQNQVL 247 >gi|67458795|ref|YP_246419.1| ribonuclease PH [Rickettsia felis URRWXCal2] gi|75535816|sp|Q4UJN4|RNPH_RICFE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|67004328|gb|AAY61254.1| Ribonuclease PH [Rickettsia felis URRWXCal2] Length = 239 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 131/238 (55%), Positives = 169/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GW+T Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGR +R V+DL LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRNMRCVIDLKKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AA+SCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRILKVNPLISQIAAVSCGIYKGEAILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+ Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEKEPFSEEQFIAMLKLAKGGAAELFKLQNQVL 236 >gi|330447145|ref|ZP_08310795.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491336|dbj|GAA05292.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 238 Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 128/240 (53%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRSANQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+QGGR+ EIQR+I R+LR+ VDL LG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + +M LKG VAA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGAMVALVDAINYM--LEKGMIKKNPLKGMVAAVSVGIYNGEPICDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD I+D+I +QK + N Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKQALEN 238 >gi|15604475|ref|NP_220993.1| ribonuclease PH [Rickettsia prowazekii str. Madrid E] gi|6226021|sp|Q9ZCT5|RNPH_RICPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|3861169|emb|CAA15069.1| RIBONUCLEASE PH (rph) [Rickettsia prowazekii] gi|292572257|gb|ADE30172.1| Ribonuclease PH [Rickettsia prowazekii Rp22] Length = 240 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGM+P ST +R+KREA G+QGGR+QEIQR+IGRA+R V++L LG RQIIIDCDVI Sbjct: 61 AEYGMIPGSTSHRIKREAALGKQGGRTQEIQRLIGRAMRCVINLQKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G ++DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRILKVNPLISQIAAISCGIYKGNAVLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD+NFV +G+++EVQG+AE+ FS++ F AML LAK + +L KLQ V+ Sbjct: 179 EDSDAEVDSNFVFACNGNLIEVQGTAEKEPFSEEQFLAMLKLAKSGVVELFKLQNQVL 236 >gi|159046003|ref|YP_001534797.1| ribonuclease PH [Dinoroseobacter shibae DFL 12] gi|189043761|sp|A8LPD1|RNPH_DINSH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157913763|gb|ABV95196.1| ribonuclease PH [Dinoroseobacter shibae DFL 12] Length = 237 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 130/239 (54%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ ++MR +S+ +++AEGSCL+ G+T +L TA++EE+VP ++RNT GW+T Sbjct: 1 MRPSGRQTHEMRGVSIETGFTRHAEGSCLISMGETRVLCTASVEERVPPFLRNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+ VD ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGAWVAL + + + ++ L HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGAWVALRLAVNKLMKAGDI--ITDPLTDHVAAVSCGLYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT SG ++EVQGSAE A FS++ +++LA+ +A+L+ QK S Sbjct: 179 EDSEAGTDANFVMTGSGGLIEVQGSAEGAPFSRNALNTLMDLAEVGVAELVAAQKAATS 237 >gi|16124407|ref|NP_418971.1| ribonuclease PH [Caulobacter crescentus CB15] gi|221233090|ref|YP_002515526.1| ribonuclease PH [Caulobacter crescentus NA1000] gi|239977592|sp|B8GXP2|RNPH_CAUCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|239977593|sp|P0CAW5|RNPH_CAUCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|13421265|gb|AAK22139.1| ribonuclease PH [Caulobacter crescentus CB15] gi|220962262|gb|ACL93618.1| ribonuclease PH [Caulobacter crescentus NA1000] Length = 238 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 129/238 (54%), Positives = 172/238 (72%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +Q+R ++L V++YAEGSCL+ FG T +L TAT+EE VP W+RN GW+T Sbjct: 1 MRPSERAPDQLRAVTLETGVNRYAEGSCLIGFGHTKVLVTATVEENVPGWMRNKGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL +++ D + +L G VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALRLATKYLLD-EGVLKTDPIL-GQVAAVSCGVFNGVPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D+NFV+T G IVE+Q + E+ F++ F ++ LA+ I +L LQ+ I Sbjct: 179 EDSNAEADSNFVLTGVGDIVEIQATGEKRGFTRAEFESLYGLAEKGINELFALQRAAI 236 >gi|148927584|ref|ZP_01811056.1| ribonuclease PH [candidate division TM7 genomosp. GTL1] gi|147887071|gb|EDK72567.1| ribonuclease PH [candidate division TM7 genomosp. GTL1] Length = 244 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 128/241 (53%), Positives = 173/241 (71%), Gaps = 10/241 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL+ R N++REI++TR+ +K+AEGS LV FGDT ++ TA++ VP ++++ GW+T Sbjct: 6 MRLANRANNKLREINITRKFTKHAEGSVLVTFGDTKVICTASVTNGVPPFLKDKGQGWVT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA G+Q GR+QEIQR+I R+LR+ VDL+A+G I IDCDVIQ Sbjct: 66 AEYGMLPRSTHERMQREAAKGKQVGRTQEIQRLIARSLRAAVDLTAMGENTITIDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMED----CSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ADGGTRTAAITG VALHD LQ++ + +N FQ VA++S G++ G P++D Sbjct: 126 ADGGTRTAAITGGCVALHDALQYLTEKKQLATNPFQ------QFVASVSVGIINGEPMLD 179 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 LDY EDS D D N VMT+ G +EVQG+AE+ F Q A+L+LAK I +L K+QK Sbjct: 180 LDYQEDSNADTDMNVVMTEQGGFIEVQGTAEKTVFQQSELDALLHLAKQGITELTKMQKQ 239 Query: 237 V 237 + Sbjct: 240 I 240 >gi|91205422|ref|YP_537777.1| ribonuclease PH [Rickettsia bellii RML369-C] gi|122425711|sp|Q1RIX6|RNPH_RICBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91068966|gb|ABE04688.1| Ribonuclease PH [Rickettsia bellii RML369-C] Length = 239 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 129/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +A+ + VP ++RN GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST R KREAV G+Q GR+QEIQR+IGR +RS++DL LG RQI IDCDVI Sbjct: 61 AEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L VAA+SCG+ PI+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRILKVNPLINQVAAVSCGIYKDQPILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD+NFV +G+++E+QG+AE+ FS++ F ML LAK +A+L KLQ V+ N Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQVLLN 238 >gi|157827025|ref|YP_001496089.1| ribonuclease PH [Rickettsia bellii OSU 85-389] gi|166228311|sp|A8GW25|RNPH_RICB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157802329|gb|ABV79052.1| ribonuclease PH [Rickettsia bellii OSU 85-389] Length = 239 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 129/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +A+ + VP ++RN GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST R KREAV G+Q GR+QEIQR+IGR +RS++DL LG RQI IDCDVI Sbjct: 61 AEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L VAA+SCG+ PI+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKERILKVNPLINQVAAVSCGIYKDQPILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD+NFV +G+++E+QG+AE+ FS++ F ML LAK +A+L KLQ V+ N Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQVLLN 238 >gi|167947111|ref|ZP_02534185.1| ribonuclease PH [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 239 Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 127/223 (56%), Positives = 165/223 (73%), Gaps = 2/223 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R I TR +K+AEGS LV+FGDT ++ TA++EE+VP W+R GW+T Sbjct: 1 MRPSGRQPDQLRPIRFTRHYTKHAEGSVLVEFGDTKVICTASVEERVPGWMRGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTDSRMGREASRGKQGGRTMEIQRLIGRSLRAAIDLQALGERSIALDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHD +QH+ + + G VA++S G+ G PI+DLDY Sbjct: 121 ADGGTRTASITGAWIALHDAVQHI--LQQDLLKTDPMIGPVASVSVGVHKGTPILDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 EDS+ + D N VM D G +EVQG+AE A +S+ AML+LA Sbjct: 179 EDSSAETDMNVVMNDQGGFIEVQGTAEAAAYSRQELDAMLDLA 221 >gi|146278691|ref|YP_001168850.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17025] gi|166228309|sp|A4WVY1|RNPH_RHOS5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145556932|gb|ABP71545.1| RNAse PH [Rhodobacter sphaeroides ATCC 17025] Length = 237 Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 128/235 (54%), Positives = 174/235 (74%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ +D SALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATTSRNRREATAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKAGIVVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IADL+ QK Sbjct: 179 EDSTAGTDGNFVLTGRQRLIEVQMSAEGASFSRDEMGQLLDLAEAGIADLVAAQK 233 >gi|90581389|ref|ZP_01237184.1| putative ribonuclease PH [Vibrio angustum S14] gi|90437366|gb|EAS62562.1| putative ribonuclease PH [Vibrio angustum S14] Length = 238 Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 128/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL+ LG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLNVLGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + +M LKG VAA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGAMVALVDAINYM--LEKGMIKKSPLKGMVAAVSVGIYKGEPICDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD I D+I +QK + N Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGITDIISMQKQALEN 238 >gi|149204370|ref|ZP_01881337.1| ribonuclease PH [Roseovarius sp. TM1035] gi|149142255|gb|EDM30302.1| ribonuclease PH [Roseovarius sp. TM1035] Length = 238 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 130/236 (55%), Positives = 175/236 (74%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ V K+AEGSCL+K GDTH+L TAT+EE+VP +++ + GW+T Sbjct: 1 MRPSGRNLSEMRSVSIETGVLKHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + LS L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDV--LSDPLIDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD NF+MT + ++EVQ SAE AT+S+D A+L+LA+ + L+ Q++ Sbjct: 179 EDSEAGVDGNFIMTGTKRLIEVQMSAEGATYSRDQMNALLDLAELGVDQLVAKQRE 234 >gi|114762203|ref|ZP_01441671.1| ribonuclease PH [Pelagibaca bermudensis HTCC2601] gi|114545227|gb|EAU48230.1| ribonuclease PH [Roseovarius sp. HTCC2601] Length = 237 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 128/235 (54%), Positives = 173/235 (73%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ V+K+AEGSCL+K GDTH++ TA+LE +VP +I+ + GW+T Sbjct: 1 MRPSGRDLSEMRPVSIETGVTKHAEGSCLIKMGDTHVICTASLEPRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTGSRMRREATTGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITG WVAL + + + ++ L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGDV--ITDPLISPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NF++ G ++EVQ SAE ATFS+D +L+LA+ +A L++ QK Sbjct: 179 EDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRDQMGTLLDLAESGVAQLVEAQK 233 >gi|161170278|gb|ABX59248.1| RNase PH [uncultured marine bacterium EB000_55B11] gi|297183806|gb|ADI19929.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 252 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 132/239 (55%), Positives = 172/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + MR I + +K+AEGSCL+K GDTH+L TA++ ++ P W+RNT GW+T Sbjct: 16 MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVXDRTPPWLRNTGMGWVT 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R +REA SG+Q GR+QEIQR+IGR+LR+ +D LG RQI +DCDV+Q Sbjct: 76 AEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQ 135 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG W+AL + M + + L HVAA+SCG+ G PI+DLDY Sbjct: 136 ADGGTRCASITGGWIALRLAINAMIKAGDLKE--DPLTEHVAAVSCGIYGGQPILDLDYA 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT S +VE+QGSAE ATF + F ++++LA+ I++LI QK IS Sbjct: 194 EDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQKAAIS 252 >gi|107022076|ref|YP_620403.1| ribonuclease PH [Burkholderia cenocepacia AU 1054] gi|116689020|ref|YP_834643.1| ribonuclease PH [Burkholderia cenocepacia HI2424] gi|170732309|ref|YP_001764256.1| ribonuclease PH [Burkholderia cenocepacia MC0-3] gi|254246044|ref|ZP_04939365.1| RNase PH [Burkholderia cenocepacia PC184] gi|123245179|sp|Q1BY75|RNPH_BURCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228269|sp|A0K5H3|RNPH_BURCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736892|sp|B1JXM2|RNPH_BURCC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|105892265|gb|ABF75430.1| RNAse PH [Burkholderia cenocepacia AU 1054] gi|116647109|gb|ABK07750.1| RNAse PH [Burkholderia cenocepacia HI2424] gi|124870820|gb|EAY62536.1| RNase PH [Burkholderia cenocepacia PC184] gi|169815551|gb|ACA90134.1| ribonuclease PH [Burkholderia cenocepacia MC0-3] Length = 246 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 134/237 (56%), Positives = 175/237 (73%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT +L TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSTL-IAAGKLARSPITD-HVAAISVGVYEGAPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ IA+L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVL 241 >gi|297537277|ref|YP_003673046.1| ribonuclease PH [Methylotenera sp. 301] gi|297256624|gb|ADI28469.1| ribonuclease PH [Methylotenera sp. 301] Length = 243 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R NQ+R + + R +K+AEGS LVKFGDTH+L TA++EEKVP +++ GW+TA Sbjct: 7 RPSQRANNQLRNVEIIRHYTKHAEGSVLVKFGDTHVLCTASVEEKVPGFLKGKGQGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I +DCDVIQA Sbjct: 67 EYGMLPRSTGSRMDREAAKGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIHMDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VALHD + + N + LK VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAYVALHDAISTL--LKNGKLTTSPLKQGVAAISVGVYKGTPVLDLDYIE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT G VE+QG+AE FS+D AML+LA I L+ Q +V+S Sbjct: 185 DSDCDTDMNVVMTADGGFVEIQGTAEGEPFSRDAMNAMLDLAAHGIKQLVIKQNEVLS 242 >gi|254784432|ref|YP_003071860.1| ribonuclease PH [Teredinibacter turnerae T7901] gi|259494129|sp|C5BLF9|RNPH_TERTT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|237687110|gb|ACR14374.1| tRNA nucleotidyltransferase [Teredinibacter turnerae T7901] Length = 239 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 130/240 (54%), Positives = 177/240 (73%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR NQ+R+IS+TR +++AEGS LV FGDT ++ TAT+EE VP +++ GW+T Sbjct: 2 LRPSGRAANQLRDISITRHYTRHAEGSVLVCFGDTKVICTATVEEGVPRFLKGEGQGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL+ LG I IDCDVIQ Sbjct: 62 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTLLGEHSITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L+ M+ +K + L+ VA++S GM G ++DLDY Sbjct: 122 ADGGTRTASITGACVALVDALRFMQ--RSKMIQTDPLRHLVASVSVGMYQGEAVLDLDYP 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE+A FS+D F M LAK+ I++L + Q+ +++ Sbjct: 180 EDSNADTDMNMVMTEQGGLIEIQGTAEQAPFSEDEFIQMFTLAKEGISELCEFQRQSLTD 239 >gi|126463642|ref|YP_001044756.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17029] gi|166228308|sp|A3PNR8|RNPH_RHOS1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|126105306|gb|ABN77984.1| RNAse PH [Rhodobacter sphaeroides ATCC 17029] Length = 237 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 128/235 (54%), Positives = 174/235 (74%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKAGIIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK Sbjct: 179 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 233 >gi|77464799|ref|YP_354303.1| RNAse PH [Rhodobacter sphaeroides 2.4.1] gi|77389217|gb|ABA80402.1| RNAse PH [Rhodobacter sphaeroides 2.4.1] Length = 241 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 128/235 (54%), Positives = 174/235 (74%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T Sbjct: 5 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q Sbjct: 65 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY Sbjct: 125 ADGGTRCASITGGWVALRLAVNKL--LKAGIIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK Sbjct: 183 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 237 >gi|78065577|ref|YP_368346.1| ribonuclease PH [Burkholderia sp. 383] gi|123569063|sp|Q39IL4|RNPH_BURS3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|77966322|gb|ABB07702.1| RNAse PH [Burkholderia sp. 383] Length = 243 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/237 (56%), Positives = 175/237 (73%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ + +R+++LTR +K+AEGS LV+FGDT +L TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVSERVPDFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLI-AAGKITRSPITD-HVAAISVGVYEGAPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ IA+L++LQKDV+ Sbjct: 185 DSQCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVL 241 >gi|311693191|gb|ADP96064.1| ribonuclease PH [marine bacterium HP15] Length = 238 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 132/235 (56%), Positives = 167/235 (71%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q R++ +TR +++AEGS LV+FGDT ++ TA++E KVP ++R GWIT Sbjct: 1 MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL+ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG VAL D L H+ ++K LK VAA+S G+ G P+VDLDY Sbjct: 121 ADGGTRTAAITGGCVALVDALNHL--VADKRLKKSPLKQMVAALSVGVYKGTPVVDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D N +MTD G +E+QG+AE A F Q +ML LAK I L ++QK Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFDQSELDSMLTLAKQGIEQLFEIQK 233 >gi|167586475|ref|ZP_02378863.1| ribonuclease PH [Burkholderia ubonensis Bu] Length = 246 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 132/237 (55%), Positives = 174/237 (73%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADELRKVTLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLI-AAGKLARSPITD-HVAAISVGVFDGTPVLDLDYPE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+D A+L+LA+ I L++LQKD + Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRDEMNALLDLAQSGIGQLVRLQKDAL 241 >gi|206561359|ref|YP_002232124.1| ribonuclease PH [Burkholderia cenocepacia J2315] gi|226736893|sp|B4EBP8|RNPH_BURCJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|198037401|emb|CAR53336.1| ribonuclease PH [Burkholderia cenocepacia J2315] Length = 246 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 133/237 (56%), Positives = 175/237 (73%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT +L TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSTL-IAAGKLTRSPITD-HVAAISVGVYEGAPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ IA+L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVL 241 >gi|325524722|gb|EGD02709.1| ribonuclease PH [Burkholderia sp. TJI49] Length = 246 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 132/237 (55%), Positives = 175/237 (73%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ + +R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K + S ++ HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKL-IAAGKLERSPIVD-HVAAISVGVYEGTPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I +L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGELVQLQKDVL 241 >gi|332559695|ref|ZP_08414017.1| ribonuclease PH [Rhodobacter sphaeroides WS8N] gi|332277407|gb|EGJ22722.1| ribonuclease PH [Rhodobacter sphaeroides WS8N] Length = 237 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 128/235 (54%), Positives = 173/235 (73%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKAGIIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST D NFV T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK Sbjct: 179 EDSTAGTDGNFVFTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 233 >gi|170698512|ref|ZP_02889583.1| ribonuclease PH [Burkholderia ambifaria IOP40-10] gi|170136596|gb|EDT04853.1| ribonuclease PH [Burkholderia ambifaria IOP40-10] Length = 246 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 133/237 (56%), Positives = 175/237 (73%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKL-IAAGKLARSPITD-HVAAISVGVYEGVPLLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGQLVQLQKDVL 241 >gi|34499302|ref|NP_903517.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472] gi|61215999|sp|Q7MBD4|RNPH_CHRVO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|34105153|gb|AAQ61509.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472] Length = 238 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 130/239 (54%), Positives = 177/239 (74%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MR + LTR +K+AEGS LV+FGDT ++ TA++EE VP +++ GW+T Sbjct: 1 MRPSQRSADAMRVVRLTRSYTKHAEGSVLVEFGDTKVICTASVEETVPSFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++RE+ +G+Q GR+QEIQR+IGR+LR+V DL+ LG RQI+IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMRRESAAGKQSGRTQEIQRLIGRSLRAVTDLAKLGERQIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ + D + K + L+ VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALADAIRGLID-AGKLSATP-LRDQVAAVSVGVYKGQPVLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT SG VEVQG+AE FS++ AML LA+ IA+L+ Q+ ++ Sbjct: 179 EDSDCETDMNVVMTGSGRFVEVQGTAEGEPFSEEEMAAMLGLARKGIAELLAHQRQALN 237 >gi|120553485|ref|YP_957836.1| ribonuclease PH [Marinobacter aquaeolei VT8] gi|166228289|sp|A1TY30|RNPH_MARAV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|120323334|gb|ABM17649.1| RNAse PH [Marinobacter aquaeolei VT8] Length = 238 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 133/239 (55%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q R++ +TR +++AEGS LV+FGDT ++ TA++E KVP ++R GWIT Sbjct: 1 MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLEALGEHTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG VAL D L H+ K LK VAA+S G+ G P+ DLDY Sbjct: 121 ADGGTRTAAITGGCVALVDALNHL--VKEKRLKKSPLKQMVAAVSVGVYRGTPVADLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N +MTD G +E+QG+AE A F Q AML LA+ I L +LQK+ +S Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQAELDAMLALARKAIDQLFELQKEALS 237 >gi|89076053|ref|ZP_01162413.1| putative ribonuclease PH [Photobacterium sp. SKA34] gi|89048205|gb|EAR53787.1| putative ribonuclease PH [Photobacterium sp. SKA34] Length = 238 Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 127/240 (52%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL LG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLKILGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + +M N LK VAA+S G+ G P DL+Y Sbjct: 121 ADGGTRTASITGAMVALVDAINYM--LENGMIKKSPLKSMVAAVSVGIYKGEPTCDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD I+D+I +QK + N Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKKALEN 238 >gi|126738497|ref|ZP_01754202.1| ribonuclease PH [Roseobacter sp. SK209-2-6] gi|126720296|gb|EBA17002.1| ribonuclease PH [Roseobacter sp. SK209-2-6] Length = 237 Score = 265 bits (676), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 130/235 (55%), Positives = 170/235 (72%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ N+MR +S+ +K+AEGSCL+K G+TH+L TATLEE+VP +I+ + GW+T Sbjct: 1 MRPSGRELNEMRPVSIETGFTKHAEGSCLIKMGETHVLCTATLEERVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITG WVAL + + + L V+AISCG+ G P++DLDY Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGDV--TIDPLMDPVSAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NF+MT SG ++EVQ SAE + FS+D +++LA+ ++L LQK Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSIFSRDQMNQLMDLAEKGTSELAALQK 233 >gi|260576117|ref|ZP_05844110.1| ribonuclease PH [Rhodobacter sp. SW2] gi|259021597|gb|EEW24900.1| ribonuclease PH [Rhodobacter sp. SW2] Length = 237 Score = 264 bits (675), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 128/238 (53%), Positives = 171/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +MR I + V K+AEGSCL+K G+TH+L +AT+E+K P +++NT GW+T Sbjct: 1 MRPSGRKLGEMRPIVIETGVMKHAEGSCLIKMGETHVLCSATIEDKAPPFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATNSRNRREAAAGKQTGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAMNKL--LKAGVIVSDPMIDHVAAVSCGIYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D NF++T G ++EVQ SAE ATFS+ +L+LA+ ADL+ QK + Sbjct: 179 EDSAAGTDGNFILTGRGRLIEVQMSAEGATFSRAEMGELLDLAEAGAADLVAAQKAAL 236 >gi|221640718|ref|YP_002526980.1| ribonuclease PH [Rhodobacter sphaeroides KD131] gi|254808599|sp|B9KPU4|RNPH_RHOSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|221161499|gb|ACM02479.1| Ribonuclease PH [Rhodobacter sphaeroides KD131] Length = 237 Score = 264 bits (674), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 127/235 (54%), Positives = 174/235 (74%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + +VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKAGIIVSDPIVDNVAAVSCGIYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK Sbjct: 179 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 233 >gi|161525573|ref|YP_001580585.1| ribonuclease PH [Burkholderia multivorans ATCC 17616] gi|189349699|ref|YP_001945327.1| ribonuclease PH [Burkholderia multivorans ATCC 17616] gi|226736894|sp|A9AEQ7|RNPH_BURM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|160343002|gb|ABX16088.1| ribonuclease PH [Burkholderia multivorans ATCC 17616] gi|189333721|dbj|BAG42791.1| ribonuclease PH [Burkholderia multivorans ATCC 17616] Length = 246 Score = 264 bits (674), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 131/237 (55%), Positives = 175/237 (73%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K + S ++ HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLL-AAGKLERSPIVD-HVAAISVGVYEGTPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGTLVQLQKDVL 241 >gi|115350911|ref|YP_772750.1| ribonuclease PH [Burkholderia ambifaria AMMD] gi|122323780|sp|Q0BHF7|RNPH_BURCM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|115280899|gb|ABI86416.1| RNAse PH [Burkholderia ambifaria AMMD] Length = 246 Score = 264 bits (674), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 132/237 (55%), Positives = 174/237 (73%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLI-AAGKLARSPITD-HVAAISVGVYEGVPLLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQKDVL 241 >gi|171315534|ref|ZP_02904770.1| ribonuclease PH [Burkholderia ambifaria MEX-5] gi|172059924|ref|YP_001807576.1| ribonuclease PH [Burkholderia ambifaria MC40-6] gi|226736891|sp|B1YUN3|RNPH_BURA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|171099371|gb|EDT44109.1| ribonuclease PH [Burkholderia ambifaria MEX-5] gi|171992441|gb|ACB63360.1| ribonuclease PH [Burkholderia ambifaria MC40-6] Length = 246 Score = 264 bits (674), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 132/237 (55%), Positives = 174/237 (73%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKL-IAAGKLARSPITD-HVAAISVGVYEGVPLLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQKDVL 241 >gi|221201201|ref|ZP_03574241.1| ribonuclease PH [Burkholderia multivorans CGD2M] gi|221206345|ref|ZP_03579358.1| ribonuclease PH [Burkholderia multivorans CGD2] gi|221213625|ref|ZP_03586599.1| ribonuclease PH [Burkholderia multivorans CGD1] gi|221166414|gb|EED98886.1| ribonuclease PH [Burkholderia multivorans CGD1] gi|221173654|gb|EEE06088.1| ribonuclease PH [Burkholderia multivorans CGD2] gi|221179051|gb|EEE11458.1| ribonuclease PH [Burkholderia multivorans CGD2M] Length = 246 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 131/237 (55%), Positives = 175/237 (73%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K + S ++ HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLL-AAGKLERSPIVD-HVAAISVGVYEGTPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMDALLDLAQSGIGTLVQLQKDVL 241 >gi|59710718|ref|YP_203494.1| ribonuclease PH [Vibrio fischeri ES114] gi|75431903|sp|Q5E8P0|RNPH_VIBF1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|59478819|gb|AAW84606.1| ribonuclease PH [Vibrio fischeri ES114] Length = 238 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 130/239 (54%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I+LTR + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + HM + K + S +KGHVAA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGASVALADAINHM-IATGKLK-SNPMKGHVAAVSVGIYNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VM + G ++EVQG+AE A FS ML LA+ I D+I+ QK ++ Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALA 237 >gi|197333899|ref|YP_002154880.1| ribonuclease PH [Vibrio fischeri MJ11] gi|226736949|sp|B5FFE2|RNPH_VIBFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|197315389|gb|ACH64836.1| ribonuclease PH [Vibrio fischeri MJ11] Length = 238 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 130/239 (54%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I+LTR + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + HM + K + S +KGHVAA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGASVALADAINHM-IATGKLK-SNPMKGHVAAVSVGIYNGEAICDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VM + G ++EVQG+AE A FS ML LA+ I D+I+ QK ++ Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALA 237 >gi|90023323|ref|YP_529150.1| ribonuclease PH [Saccharophagus degradans 2-40] gi|123395477|sp|Q21EE1|RNPH_SACD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|89952923|gb|ABD82938.1| RNAse PH [Saccharophagus degradans 2-40] Length = 239 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR Q+R++++TR+ +++AEGS LV FGDT ++ TA++E VP +++ GWITA Sbjct: 3 RPSGRAPEQLRDVTITRQFTRHAEGSVLVCFGDTKVICTASVEAGVPRFLKGQGQGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL+ALG I+IDCDVIQA Sbjct: 63 EYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSIVIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D +++++ K + L VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGALVALVDAIRYLQ--REKMITTDPLVHMVAAVSVGIYEGVPVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT+ G ++E+QG+AE+ F+ + F M +LAK +A+L+ LQK ++ Sbjct: 181 DSNAETDMNMVMTEEGGLIEIQGTAEKKPFTDEQFAGMFSLAKKGVAELVALQKAALAQ 239 >gi|91774399|ref|YP_544155.1| ribonuclease PH [Methylobacillus flagellatus KT] gi|122399230|sp|Q1GXA4|RNPH_METFK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91708386|gb|ABE48314.1| RNAse PH [Methylobacillus flagellatus KT] Length = 238 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 132/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +Q+RE+ + R +K+AEGS LVKFGDTH+L TA++E+KVP ++R GW T Sbjct: 1 MRPSNRAPDQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASVEDKVPPFLRGRNQGWTT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+V+DL LG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAVIDLGKLGERTIHLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD + M +N L+ VAAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALHDAVGFM--LANDMIQESPLRDAVAAISVGVYQGTPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT SG VE+QG+AE F + ML LA+ I L+ QK+ + Sbjct: 179 EDSACDTDMNVVMTGSGGFVEIQGTAEGEPFQRAAMNRMLELAESGIRTLLLKQKEAL 236 >gi|84501187|ref|ZP_00999392.1| ribonuclease PH [Oceanicola batsensis HTCC2597] gi|84390478|gb|EAQ02966.1| ribonuclease PH [Oceanicola batsensis HTCC2597] Length = 237 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 128/235 (54%), Positives = 175/235 (74%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ V+K+AEGSCL+K GDTH++ TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRDLSEMRAVSIETGVTKHAEGSCLIKVGDTHVICTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + ++ L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDV--VTDPLVDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NFVMT SG ++EVQ SAE AT+S+D +++LA+ +++L + QK Sbjct: 179 EDSEAGVDGNFVMTGSGRLIEVQMSAEGATYSRDQMNQLVDLAEKGVSELAEKQK 233 >gi|54307419|ref|YP_128439.1| putative ribonuclease PH [Photobacterium profundum SS9] gi|90412679|ref|ZP_01220680.1| putative ribonuclease PH [Photobacterium profundum 3TCK] gi|61215939|sp|Q6LVN8|RNPH_PHOPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|46911839|emb|CAG18637.1| putative ribonuclease PH [Photobacterium profundum SS9] gi|90326254|gb|EAS42673.1| putative ribonuclease PH [Photobacterium profundum 3TCK] Length = 238 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 129/241 (53%), Positives = 172/241 (71%), Gaps = 4/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R I++TR + +AEGS LV+FGDT ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRSTSQVRPITITRNFTAHAEGSVLVEFGDTKVICTASVEENVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREASSGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D + M + K L + +KG VAA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGAMVALVDAVNSMIE---KGTLKKSPIKGMVAAVSVGIYKGEAICDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD IAD++ +QK + Sbjct: 178 LEDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGIADIVTMQKQALE 237 Query: 240 N 240 + Sbjct: 238 S 238 >gi|157826032|ref|YP_001493752.1| ribonuclease PH [Rickettsia akari str. Hartford] gi|166228310|sp|A8GPB9|RNPH_RICAH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157799990|gb|ABV75244.1| ribonuclease PH [Rickettsia akari str. Hartford] Length = 239 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 127/238 (53%), Positives = 168/238 (70%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL EGSC++K G+TH++ +AT E VP ++R GW+T Sbjct: 1 MRQSGRKSNQLRPISLELSPLINTEGSCIIKIGNTHVMCSATCETTVPPFLRGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGR++R V+DL LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRSMRCVMDLKKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG++VALH ++ + + L +AA+SCG+ G I+DLDY Sbjct: 121 ADGGTRTASITGSYVALHLAIRSL--MKKRILKVNPLISQIAAVSCGIYKGEAILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD+NFV +G+++EVQG+AE+ FS++ F ML LAK A+L KLQ V+ Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEQEPFSEEQFIEMLKLAKCGAAELFKLQNQVL 236 >gi|254252975|ref|ZP_04946293.1| RNase PH [Burkholderia dolosa AUO158] gi|124895584|gb|EAY69464.1| RNase PH [Burkholderia dolosa AUO158] Length = 246 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 132/237 (55%), Positives = 174/237 (73%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPDFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDV QA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVTQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLI-AAGKLVRSPITD-HVAAISVGVYEGVPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGRLVQLQKDVL 241 >gi|260429579|ref|ZP_05783556.1| ribonuclease PH [Citreicella sp. SE45] gi|260420202|gb|EEX13455.1| ribonuclease PH [Citreicella sp. SE45] Length = 296 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 127/239 (53%), Positives = 173/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ ++K+AEGSCL+K GDT ++ TA+LEE+VP +I+ + GW+T Sbjct: 60 MRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASLEERVPPFIKGSGLGWVT 119 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA SG+QGGR+ EIQR+IGR+LR+ VD ALG RQI IDCDVIQ Sbjct: 120 AEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 179 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + + L VAA+SCG+ G PI+DLDY Sbjct: 180 ADGGTRCASITGGWVALRLAVNKLMKAGDVK--TDPLVSPVAAVSCGIYAGQPILDLDYP 237 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF++ G ++EVQ SAE ATFS+ +++LA+ +A L++ QK ++ Sbjct: 238 EDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQLVEAQKAAVA 296 >gi|134295025|ref|YP_001118760.1| ribonuclease PH [Burkholderia vietnamiensis G4] gi|166228274|sp|A4JCC2|RNPH_BURVG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|134138182|gb|ABO53925.1| RNAse PH [Burkholderia vietnamiensis G4] Length = 246 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 132/237 (55%), Positives = 173/237 (72%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTINIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKL-IAAGKLARSPITD-HVAAISVGVYEGAPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGRLVQLQKDVL 241 >gi|89067431|ref|ZP_01154944.1| ribonuclease PH [Oceanicola granulosus HTCC2516] gi|89047000|gb|EAR53054.1| ribonuclease PH [Oceanicola granulosus HTCC2516] Length = 236 Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 128/234 (54%), Positives = 171/234 (73%), Gaps = 3/234 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR QMR +++ V+K+AEGSCL+K GDTH+L TA++E++ P ++RNT GW+T Sbjct: 1 MRPSGRDLGQMRPVTIETGVTKHAEGSCLIKMGDTHVLCTASIEDRPPPFLRNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ V+ +ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVERAALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + S L V+A+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMQAGDV--TSDPLGDPVSAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS VD NFVMT G ++EVQ SAE ATFS+D +L LA+ + +L LQ Sbjct: 179 EDSVAGVDGNFVMT-GGRMIEVQMSAEGATFSRDELEQLLGLAERGVGELAALQ 231 >gi|85706900|ref|ZP_01037990.1| ribonuclease PH [Roseovarius sp. 217] gi|85668511|gb|EAQ23382.1| ribonuclease PH [Roseovarius sp. 217] Length = 238 Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 127/236 (53%), Positives = 173/236 (73%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ V K+AEGSCL+K GDTH+L TAT+EE+VP +++ + GW+T Sbjct: 1 MRPSGRNLSEMRPVSIETGVLKHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTNSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + +S L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDV--ISDPLIDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD NF+MT S ++EVQ SAE +T+S+D +L+LA+ + L+ Q++ Sbjct: 179 EDSEAGVDGNFIMTGSKRLIEVQMSAEGSTYSRDQMNTLLDLAEQGVDLLVAKQRE 234 >gi|254448548|ref|ZP_05062008.1| ribonuclease PH [gamma proteobacterium HTCC5015] gi|198261931|gb|EDY86216.1| ribonuclease PH [gamma proteobacterium HTCC5015] Length = 240 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 127/240 (52%), Positives = 177/240 (73%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R++ LTR+ + +AEGS LV+FG+T ++ TA++EE+VP +++ GW+TA Sbjct: 4 RPSGRQADQLRDVRLTRQYTCHAEGSVLVEFGNTKVICTASVEERVPPFLKGQGQGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+ +DL ALG RQI +DCDVIQA Sbjct: 64 EYGMLPRSTGSRMGREAARGKQSGRTQEIQRLIGRSLRAAIDLEALGERQITLDCDVIQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTA+ITGA+VAL D + + N +LS+ L G VA+IS G+ G P++DLDY Sbjct: 124 DGGTRTASITGAFVALTDAVNQL---INDGKLSKSPLLGQVASISVGIYEGTPVLDLDYP 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM D+GH +EVQG+AE F ++ +L+LA I +L ++QK ++ Sbjct: 181 EDSNAETDMNVVMNDAGHFIEVQGTAEGHAFRREELNQLLDLADKGIRELFEVQKAALAK 240 >gi|294679008|ref|YP_003579623.1| ribonuclease PH [Rhodobacter capsulatus SB 1003] gi|294477828|gb|ADE87216.1| ribonuclease PH [Rhodobacter capsulatus SB 1003] Length = 237 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 127/239 (53%), Positives = 172/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +R IS+ V+K+AEGS L+K GDTH+L TAT+E+K P +++ + GW+T Sbjct: 1 MRPSGRNLADIRSISIETGVTKHAEGSVLIKMGDTHVLCTATIEDKAPSFLKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ +D SALG RQI++DCDV+Q Sbjct: 61 AEYGMLPRATNSRNRREAAAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + +S + HVAAISCG+ G PI DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKSGLIVSDPIIDHVAAISCGIYAGQPIADLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF++T G +VEVQ +AE +TFS++ +L+LA+ +A L+ QK I+ Sbjct: 179 EDSEAGVDGNFILTGRGRLVEVQMTAEGSTFSREEMTKLLDLAEAGVAQLVAAQKAAIA 237 >gi|253995547|ref|YP_003047611.1| ribonuclease PH [Methylotenera mobilis JLW8] gi|253982226|gb|ACT47084.1| ribonuclease PH [Methylotenera mobilis JLW8] Length = 241 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 133/231 (57%), Positives = 168/231 (72%), Gaps = 2/231 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R S R NQ+RE+ + R +K+AEGS LVKFGDTH+L TA+++EKVP +++ GW+T Sbjct: 5 IRPSQRACNQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLKGKGQGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ Sbjct: 65 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD + + S K S LK VAAIS G+ G P++DLDY Sbjct: 125 ADGGTRTASITGAYVALHDAISFLLK-SGKISESP-LKDSVAAISVGVYQGTPVLDLDYI 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 EDS D D N VMT G VE+QG+AE F++D AML+LA I LI Sbjct: 183 EDSDCDTDMNVVMTGKGGFVEIQGTAEGEPFARDAMNAMLDLAAHGIQQLI 233 >gi|197106932|ref|YP_002132309.1| ribonuclease PH [Phenylobacterium zucineum HLK1] gi|226736923|sp|B4RC87|RNPH_PHEZH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|196480352|gb|ACG79880.1| ribonuclease PH [Phenylobacterium zucineum HLK1] Length = 238 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 126/235 (53%), Positives = 167/235 (71%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ + +R ++L V++YAEGSCL FG T +L TA+LEE VP ++R GW+T Sbjct: 1 MRPSDRRPDLLRPVTLETGVNRYAEGSCLASFGHTKVLVTASLEEGVPPFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATHTRGRREAAQGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITVDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL +++ + + VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALRLATRYL--LEEGVIATDPILDQVAAISCGVFSGTPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + DANFV+T +G IVE+Q + E+ FS+ F A+ LA+ I +L +LQ+ Sbjct: 179 EDSNAEADANFVLTGAGDIVEIQATGEKRGFSEAEFEALFALARKGIGELCELQR 233 >gi|254295455|ref|YP_003061478.1| ribonuclease PH [Hirschia baltica ATCC 49814] gi|254043986|gb|ACT60781.1| ribonuclease PH [Hirschia baltica ATCC 49814] Length = 243 Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 131/239 (54%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R +RE+SL S+YAEGSCLVKFG TH+L TA+ VP W++ T GW+TA Sbjct: 6 RPSKRAPESLREVSLEVGKSRYAEGSCLVKFGHTHVLCTASWTGDVPRWMKGTGKGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R +REA +G+Q GR+QEIQR+IGRALRSV DL ALG QI IDCDVIQA Sbjct: 66 EYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRALRSVTDLEALGENQITIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG +VAL + ++++ + L AAISCG+ P++DLDY E Sbjct: 126 DGGTRTAAITGGYVALALAINYLKE--EGIISTNPLVSQAAAISCGVYQDVPVLDLDYAE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VDANF+M+ G I+EVQG+ E FS++ F AM +LA +L LQK I N Sbjct: 184 DSNAMVDANFIMSSDGRIIEVQGTGEERPFSREEFLAMSDLADAGCKELFALQKAAIDN 242 >gi|149376205|ref|ZP_01893970.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893] gi|149359610|gb|EDM48069.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893] Length = 238 Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 132/240 (55%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q R+I +TR +++AEGS LV+FGDT ++ TA++E KVP ++R GWIT Sbjct: 1 MRPSGRTPEQPRDIRITRHYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDLSALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLSALGEHSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG VAL D L H+ + + S LK +AA S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGCVALVDALNHLVK-EGRLKTSP-LKQMIAAFSVGVYKGTPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N +MTD G +E+QG+AE A F Q+ ML LAK I L + QK ++ Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQEELDGMLKLAKLGIGQLFEAQKAALAQ 238 >gi|254418052|ref|ZP_05031776.1| ribonuclease PH [Brevundimonas sp. BAL3] gi|196184229|gb|EDX79205.1| ribonuclease PH [Brevundimonas sp. BAL3] Length = 241 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 124/235 (52%), Positives = 170/235 (72%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++Q+R +++ V++YAEGSCL+ FG T +L TA++EE +P W+R GW+T Sbjct: 1 MRHSQRTDDQLRPVTIETGVNRYAEGSCLITFGHTKVLVTASVEETIPGWMRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQ+++DCDVIQ Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVVLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVA+ L ++ D S + VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVAMASALNYLRD--EGVLKSDPILDQVAAVSCGVCDGVPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D+NFV+T +G IVEVQ + E+ FS+ F + +LA+ +L LQK Sbjct: 179 EDSEAEADSNFVLTGAGQIVEVQATGEKRGFSRAEFDRLFSLAEIGCTELFALQK 233 >gi|126666552|ref|ZP_01737530.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17] gi|126628940|gb|EAZ99559.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17] Length = 238 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 131/239 (54%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q R+I +TR +++AEGS L++FGDT ++ TA++E KVP ++R GWIT Sbjct: 1 MRPSGRTPEQPRDIRITRNYTRHAEGSVLIEFGDTKVICTASVENKVPPFLRGEGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTNSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKALGEHTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG VAL D L + + K LK VAA+S G+ G P+VDLDY Sbjct: 121 ADGGTRTAAITGGCVALVDALNFL--VAQKRLKKSPLKQMVAAVSVGVFKGKPVVDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMTD G +E+QG+AE A F+Q+ +ML LAK I L LQ + ++ Sbjct: 179 EDSVAETDMNVVMTDKGGFIEIQGTAEGAPFAQEELDSMLVLAKQGIETLFALQNEALN 237 >gi|254460324|ref|ZP_05073740.1| ribonuclease PH [Rhodobacterales bacterium HTCC2083] gi|206676913|gb|EDZ41400.1| ribonuclease PH [Rhodobacteraceae bacterium HTCC2083] Length = 237 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 126/234 (53%), Positives = 170/234 (72%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQMR++S+ V+K+AEGSC++K GDTH+L TATLE +VP +I+ + GW+T Sbjct: 1 MRPSGRDLNQMRDVSIETNVTKHAEGSCMIKMGDTHVLCTATLENRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTTSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + S L VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALKLAVNKLIKAGEI--TSDPLISPVAAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS VD NF+M +G ++E Q SAE +T+S+D +++LA+ +++L +Q Sbjct: 179 EDSEAGVDGNFIMLANGQMIETQMSAEGSTYSRDQMNQLIDLAEKGVSELAAMQ 232 >gi|83942034|ref|ZP_00954496.1| ribonuclease PH [Sulfitobacter sp. EE-36] gi|83953083|ref|ZP_00961805.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1] gi|83842051|gb|EAP81219.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1] gi|83847854|gb|EAP85729.1| ribonuclease PH [Sulfitobacter sp. EE-36] Length = 237 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 125/235 (53%), Positives = 174/235 (74%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +++R +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRKLDELRAVSIETGFTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD SALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + +S L VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALKLAVNKLMKAGD--VVSDPLVDPVAAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NF+MT +G ++E+Q SAE +T+S+D +++LA+ +A+L++ QK Sbjct: 179 EDSEAGVDGNFIMTGTGKLIEIQMSAEGSTYSRDQMNQLMDLAEKGVAELVEKQK 233 >gi|289209634|ref|YP_003461700.1| ribonuclease PH [Thioalkalivibrio sp. K90mix] gi|288945265|gb|ADC72964.1| ribonuclease PH [Thioalkalivibrio sp. K90mix] Length = 242 Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ ++MR + TR +++AEGS LV+FGDT +L AT+E +VP W++N GW+T Sbjct: 1 MRPSGRQADEMRPVRFTRHFTRHAEGSVLVEFGDTRVLCNATIESRVPPWLKNKGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R+ REA G+ GGR+ EIQR+IGR+LR+VVDL ALG RQII+DCDVIQ Sbjct: 61 AEYSMLPRSTHDRMAREAARGKLGGRTMEIQRLIGRSLRAVVDLEALGERQIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA+VAL D ++ + L GH+AAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASISGAYVALRDAIRKARE--QGMIRKDPLHGHLAAISVGIFNGAPVLDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM ++G ++E+QG+AE F +D ML+L + I +++ Q+ ++ Sbjct: 179 EDSQAETDLNLVMNEAGGVIEIQGTAEGHAFRRDELNQMLDLGEKGIQQIVEAQRAALAK 238 >gi|300311449|ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1] gi|124483528|emb|CAM32637.1| tRNA nucleotidyltransferase (ribonuclease PH) protein [Herbaspirillum seropedicae] gi|300074234|gb|ADJ63633.1| tRNA nucleotidyltransferase (ribonuclease PH) protein [Herbaspirillum seropedicae SmR1] Length = 242 Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 131/237 (55%), Positives = 168/237 (70%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR Q+RE+ LTR+ +K+AEGS LV+FGDT +L TA++EEKVP +++ GW+TA Sbjct: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ DL A G R + +DCDV+QA Sbjct: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA VA +D ++ S + +K VAAIS G+ G P++DLDY E Sbjct: 126 DGGTRTAAITGAMVAAYDAFAGLK--SQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMTD+GH VEVQG+AE A F + A+L+LA+ IA L LQ+ + Sbjct: 184 DSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 >gi|114321593|ref|YP_743276.1| ribonuclease PH [Alkalilimnicola ehrlichii MLHE-1] gi|122310932|sp|Q0A5V1|RNPH_ALHEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|114227987|gb|ABI57786.1| RNAse PH [Alkalilimnicola ehrlichii MLHE-1] Length = 238 Score = 261 bits (666), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 126/238 (52%), Positives = 171/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +++R + LTR +++AEGS LV+FGDT +L TA++EE+VP W+RN GW+T Sbjct: 1 MRPSGRKPDELRPVRLTRHYTRHAEGSVLVEFGDTRVLCTASVEERVPPWLRNQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R REA G+Q GR+ EIQR+IGRALR+ VDL ALG R++++DCDV+Q Sbjct: 61 AEYGMLPRSTGTRNDREAARGKQQGRTIEIQRLIGRALRAAVDLEALGERRVVLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + S + G VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAYVALVDACNLLRK-EGRIRRSPIF-GQVAAVSVGIYQGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM ++G +E+QG+AE F +D AM LA+ +A LI+ Q+ + Sbjct: 179 EDSEAETDMNVVMNEAGGFIELQGTAEGHAFRRDELNAMTELAELGVAQLIETQRQAL 236 >gi|110677820|ref|YP_680827.1| ribonuclease PH [Roseobacter denitrificans OCh 114] gi|123362332|sp|Q16D02|RNPH_ROSDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|109453936|gb|ABG30141.1| ribonuclease PH [Roseobacter denitrificans OCh 114] Length = 237 Score = 261 bits (666), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 125/235 (53%), Positives = 171/235 (72%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ N+MR +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRELNEMRPVSIETGFTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++RE+ +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + +S L VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDV--ISDPLVDPVAAISCGIYAGQPVMDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NF+MT S ++EVQ SAE ATFS+D +++LA+ + +L+ QK Sbjct: 179 EDSEAGVDGNFIMTGSKQLIEVQMSAEGATFSRDQMNQLMDLAEKGVGELVAAQK 233 >gi|56476728|ref|YP_158317.1| ribonuclease PH [Aromatoleum aromaticum EbN1] gi|81598865|sp|Q5P5J6|RNPH_AZOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56312771|emb|CAI07416.1| Ribonuclease PH [Aromatoleum aromaticum EbN1] Length = 239 Score = 260 bits (665), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R + +TR + +AEGS LV+FG T +L TA++E+ VP ++R GW+T Sbjct: 1 MRPSQRRPDQLRAVMITRNFTCHAEGSVLVEFGATRVLCTASVEDTVPPFLRGRGQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDLSALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VA+HD + + K S L+ VAA+S GM G P++DLDY Sbjct: 121 ADGGTRTAAITGACVAVHDAFRKLV-TEGKLPYSP-LREFVAAVSVGMFQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT +G VEVQG+AE ATFS+ A+L LA+ I L++ QK I Sbjct: 179 EDSGCDTDMNVVMTGAGGFVEVQGTAEGATFSRAELNALLELAESGIRRLVEAQKAAI 236 >gi|302877637|ref|YP_003846201.1| ribonuclease PH [Gallionella capsiferriformans ES-2] gi|302580426|gb|ADL54437.1| ribonuclease PH [Gallionella capsiferriformans ES-2] Length = 238 Score = 260 bits (665), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 130/240 (54%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ NQ+REI +TR +K+AEGS L++ GDT ++ TA++EE+VP + + GW+T Sbjct: 1 MRPSSRQANQLREIRITRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA G+Q GR+QEIQR+IGR+LR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMQREAAKGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTIQIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + + +AAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALQDAVSSL--IEKGLLTETPVTDAIAAISVGIYQGTPVLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VM SGH VEVQG+AE FS+ +L LA++ I DLIK+Q+ ++ Sbjct: 179 EDSACDTDMNVVMLGSGHFVEVQGTAEGHAFSRVEMDQLLELAQNGIVDLIKMQQAALAG 238 >gi|257092562|ref|YP_003166203.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045086|gb|ACV34274.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 238 Score = 260 bits (665), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 130/240 (54%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ +Q+R++ +TR+ + +AEGS L++ GDT +L TA++EE VP + R T GW+T Sbjct: 1 MRPSQRQPSQLRQVRITRQFTSHAEGSVLIEIGDTRVLCTASVEEFVPPFRRGTGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R +REA G+Q GR+QEIQR+IGRALR+V DL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRTQREAAKGKQTGRTQEIQRLIGRALRAVTDLKALGERQITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITGAW+AL+D H+ + + L HVAAIS G+ G P++DLDY Sbjct: 121 ADGGTRCAAITGAWLALNDACAHL--LAQGRLVVNPLSDHVAAISVGIYQGSPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ D D N VMT SG IVE+QG+AE F++ +L+LA I LI QK ++ Sbjct: 179 EDSSCDTDMNVVMTGSGGIVEIQGTAEGVPFTRGQMNQLLDLADAGIGQLIARQKAALAQ 238 >gi|302381326|ref|YP_003817149.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264] gi|302191954|gb|ADK99525.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264] Length = 242 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/235 (53%), Positives = 166/235 (70%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q+R ++L V++YAEGSCLV FG T +L TA++EE VP W+R GW+T Sbjct: 1 MRPSDRTPEQLRAVTLETGVNRYAEGSCLVSFGHTKVLVTASVEENVPGWMRGKGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQ++IDCDVIQ Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVLIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVA+ L ++ ++ +L VAA+SCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWVAMATALNYLR-AEGVMKVDPILD-QVAAVSCGIFADTPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D NFV+T SG IVE+Q + E+ FS+ F + LA+ DL LQ+ Sbjct: 179 EDSNAEADGNFVLTGSGTIVEIQATGEKRGFSRPEFDRLFQLAELGCNDLFALQR 233 >gi|209519146|ref|ZP_03267951.1| ribonuclease PH [Burkholderia sp. H160] gi|209500446|gb|EEA00497.1| ribonuclease PH [Burkholderia sp. H160] Length = 245 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 129/234 (55%), Positives = 170/234 (72%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ NQ+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASISESVPPFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLNLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVAKLL-ATGRIE-SSPINDYVAAISVGVYDGVPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I+ LI QK Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMSALLDLASDGISTLIAKQK 238 >gi|99082712|ref|YP_614866.1| RNAse PH [Ruegeria sp. TM1040] gi|122397509|sp|Q1GCL2|RNPH_SILST RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|99038992|gb|ABF65604.1| RNAse PH [Ruegeria sp. TM1040] Length = 237 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/235 (53%), Positives = 169/235 (71%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N+MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + L V+AISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVTM--DPLVDPVSAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NF+MT SG ++EVQ SAE + FS+D +++LA ++L ++QK Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTSELAEMQK 233 >gi|167563697|ref|ZP_02356613.1| ribonuclease PH [Burkholderia oklahomensis EO147] Length = 243 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 128/234 (54%), Positives = 172/234 (73%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ NQ+R++ +TRR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R + +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRTLHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLV-ATGKIPRSPITD-YVAAISVGVFGGAPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT SG VEVQG+AE FS+ A+L+LA+ I +L+++Q+ Sbjct: 185 DSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQR 238 >gi|259418160|ref|ZP_05742079.1| ribonuclease PH [Silicibacter sp. TrichCH4B] gi|259347066|gb|EEW58880.1| ribonuclease PH [Silicibacter sp. TrichCH4B] Length = 237 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/235 (53%), Positives = 169/235 (71%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N+MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + L V+AISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVTM--DPLVDPVSAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NF+MT SG ++EVQ SAE + FS+D +++LA ++L ++QK Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTSELAEMQK 233 >gi|91225015|ref|ZP_01260274.1| ribonuclease PH [Vibrio alginolyticus 12G01] gi|91190261|gb|EAS76531.1| ribonuclease PH [Vibrio alginolyticus 12G01] Length = 238 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GWIT Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D S K + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDEVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238 >gi|167570847|ref|ZP_02363721.1| ribonuclease PH [Burkholderia oklahomensis C6786] Length = 243 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 128/234 (54%), Positives = 172/234 (73%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ NQ+R++ +TRR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R + +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRTLHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLV-STGKIPRSPITD-YVAAISVGVFGGAPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT SG VEVQG+AE FS+ A+L+LA+ I +L+++Q+ Sbjct: 185 DSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQR 238 >gi|295677344|ref|YP_003605868.1| ribonuclease PH [Burkholderia sp. CCGE1002] gi|295437187|gb|ADG16357.1| ribonuclease PH [Burkholderia sp. CCGE1002] Length = 245 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 129/237 (54%), Positives = 172/237 (72%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ NQ+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVSESVPPFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R I +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTINLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVARLL-ATGRIESSPITD-YVAAISVGVYDGVPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VE+QG+AE FS++ A+L+LA D I+ LI QK+ + Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGISTLIAKQKEAL 241 >gi|269965906|ref|ZP_06179999.1| ribonuclease PH [Vibrio alginolyticus 40B] gi|269829459|gb|EEZ83700.1| ribonuclease PH [Vibrio alginolyticus 40B] Length = 240 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 63 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D S K + + +KGHVAA+S G+L + DL+Y Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDEVLCDLEYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 240 >gi|89093846|ref|ZP_01166792.1| Ribonuclease PH [Oceanospirillum sp. MED92] gi|89081976|gb|EAR61202.1| Ribonuclease PH [Oceanospirillum sp. MED92] Length = 256 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 171/238 (71%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +QMRE+ +TR +K+AEGS LV+FG+T +L TAT+E VP ++R + GW+TA Sbjct: 18 RPSGRDNDQMREVKITRNFTKHAEGSVLVEFGETKVLCTATVERGVPRFLRGSGQGWVTA 77 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGR+LR+ +DL+ LG I +DCDV+QA Sbjct: 78 EYGMLPRSTTTRNAREAAKGKQGGRTVEIQRLIGRSLRAALDLNKLGENTITLDCDVLQA 137 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ N +K +AA+S G+ G ++DLDY E Sbjct: 138 DGGTRTASITGAFVALQDAINVLKQDKNGAMKGDPIKQAIAAVSVGIFEGEAVLDLDYAE 197 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N +MT G +EVQG+AE A ++Q+ AML+LA+ I+++++LQ++ ++ Sbjct: 198 DSKAETDMNVIMTSKGGFIEVQGTAEGAPYTQEELNAMLDLARKGISEIVELQQEALA 255 >gi|119382767|ref|YP_913823.1| ribonuclease PH [Paracoccus denitrificans PD1222] gi|119372534|gb|ABL68127.1| RNAse PH [Paracoccus denitrificans PD1222] Length = 241 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + MR IS+ + ++AEGSCL+ GDT +L +A++EEK P +++ + GW+T Sbjct: 2 MRPSGRNLSDMRPISIETGIMRHAEGSCLISCGDTRVLCSASIEEKAPPFLKGSGQGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGRALR+ VD ALG RQI++DCDVIQ Sbjct: 62 AEYGMLPRATNTRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRRALGERQIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITG WVAL + + + + HVAA+SCG+ G PI+DLDY Sbjct: 122 ADGGTRCAAITGGWVALRLAMNKL--LKAGIVTADPIMDHVAAVSCGIYAGQPILDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D NF+MT +G ++EVQ SAE ATFS+ +L+LA+ IA+L++ Q + ++ Sbjct: 180 EDSEAGTDGNFIMTGAGRLIEVQMSAEGATFSRPEMNQLLDLAEAGIAELVRAQNEAVA 238 >gi|209693820|ref|YP_002261748.1| ribonuclease PH [Aliivibrio salmonicida LFI1238] gi|226736880|sp|B6EPI9|RNPH_ALISL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|208007771|emb|CAQ77892.1| ribonuclease PH [Aliivibrio salmonicida LFI1238] Length = 238 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 129/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I++TR + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRTAQQVRPITITRHFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNNREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + HM S K + +KGHVAA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGASVALADAINHM-IASGKLK-KNPMKGHVAAVSVGIYKGEAICDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VM + G ++EVQG+AE A FS ML LA+ I D+I+ QK ++ Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEVAPFSHQELLDMLALAQQGINDIIEKQKAALA 237 >gi|329901883|ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480] gi|327548975|gb|EGF33592.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480] Length = 244 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 128/235 (54%), Positives = 166/235 (70%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR + +R + LTR +K+AEGS L++FGDT ++ TA++E+KVP +++ GW+T Sbjct: 5 LRPSGRTADALRPVRLTRHYTKHAEGSVLIEFGDTKVICTASIEDKVPGFLKGKGQGWMT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ DLSA G R + +DCDVIQ Sbjct: 65 AEYGMLPRSTHTRMAREAAKGKQSGRTQEIQRLIGRSLRAAFDLSAFGERTLHLDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VA HD + D + LK VAAIS G+ G P++DLDY Sbjct: 125 ADGGTRTASITGAMVAAHDAFSKLVDTGVLSAMP--LKHFVAAISVGVFQGTPVLDLDYD 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST D D N VMTD+GH +EVQG+AE A F + +L+LA I DLI LQ+ Sbjct: 183 EDSTCDTDMNVVMTDAGHFIEVQGTAEGAAFDRATMNQLLDLADGGIRDLIALQR 237 >gi|187925061|ref|YP_001896703.1| ribonuclease PH [Burkholderia phytofirmans PsJN] gi|226736896|sp|B2T6B5|RNPH_BURPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|187716255|gb|ACD17479.1| ribonuclease PH [Burkholderia phytofirmans PsJN] Length = 246 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 130/234 (55%), Positives = 169/234 (72%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ NQ+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRQANQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVAKLL-ATGRIESSPITD-YVAAISVGVYDGLPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I LI QK Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVAFSRDEMNALLDLASDGINTLIAKQK 238 >gi|163742618|ref|ZP_02150004.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10] gi|161384203|gb|EDQ08586.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10] Length = 237 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 126/235 (53%), Positives = 172/235 (73%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRNLDQMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + + ++ ++ VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMK-TGEVKIDPLVD-PVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NF+MT SG ++EVQ SAE + FS++ +++LA A+L +LQK Sbjct: 179 EDSEAGVDGNFIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQK 233 >gi|114571545|ref|YP_758225.1| ribonuclease PH [Maricaulis maris MCS10] gi|122314919|sp|Q0AKA6|RNPH_MARMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|114342007|gb|ABI67287.1| RNAse PH [Maricaulis maris MCS10] Length = 238 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 129/234 (55%), Positives = 162/234 (69%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR + MREI L VS YAEGSCL +FG TH+L TA++EE VP W+R GW+T Sbjct: 1 MRPHGRARDAMREIKLEAGVSVYAEGSCLARFGGTHVLCTASIEESVPPWMRGGGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATHTRSRREATAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL ++ S + G +AAISCG++ G +DL+Y Sbjct: 121 ADGGTRTAAITGAWVALKQATGYL--IEEGLLTSDPVHGQLAAISCGVIDGETRLDLEYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ED + DANFV+TD+G IVE+Q +AE + F + LAK + DL + Q Sbjct: 179 EDRRAEADANFVLTDTGGIVEIQATAEDKPIPETDFDLLFALAKAGVVDLCEAQ 232 >gi|237813382|ref|YP_002897833.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346] gi|237506567|gb|ACQ98885.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346] Length = 243 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 126/235 (53%), Positives = 174/235 (74%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T Sbjct: 6 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ Sbjct: 66 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + + + + S + +VAAIS G+ G P++DLDYG Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGVFGGTPVLDLDYG 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQR 238 >gi|260431972|ref|ZP_05785943.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157] gi|260415800|gb|EEX09059.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157] Length = 237 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/235 (52%), Positives = 170/235 (72%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + ++ L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDV--ITDPLVDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NF+MT SG ++EVQ SAE + FS+ ++ LA+ +++L+ QK Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRAQMDQLMELAEKGVSELVAAQK 233 >gi|163745104|ref|ZP_02152464.1| ribonuclease PH [Oceanibulbus indolifex HEL-45] gi|161381922|gb|EDQ06331.1| ribonuclease PH [Oceanibulbus indolifex HEL-45] Length = 237 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ ++MR +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRKLDEMRAVSIETGFTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD SALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAALGKQGGRTVEIQRLIGRALRAGVDRSALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG W+AL + + + +S L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWIALRLAVNKLMKAGD--VVSDPLVDPVAAVSCGIYAGQPLLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF+MT SG ++E+Q SAE +T+++D +++LA+ + +L +QK V + Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEIQMSAEGSTYTRDQMNQLMDLAEKGVGELAAIQKSVTA 237 >gi|269103912|ref|ZP_06156609.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP 102761] gi|268163810|gb|EEZ42306.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP 102761] Length = 238 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRSASQVRPITITRQFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+ VDL LG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + +M LK VAA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGAMVALVDAIHYM--LEKGMIKKNPLKTMVAAVSVGIYNGEPICDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++E+QG+AE FS + AML LAK+ I ++I QK ++N Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKEGINEIIAQQKQALAN 238 >gi|254362020|ref|ZP_04978149.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213] gi|153093571|gb|EDN74545.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213] Length = 238 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 170/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ+REI +TR ++YAEGS L++FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL+D + + +N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VANGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LAK I+ L++ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALA 237 >gi|330815847|ref|YP_004359552.1| Ribonuclease PH [Burkholderia gladioli BSR3] gi|327368240|gb|AEA59596.1| Ribonuclease PH [Burkholderia gladioli BSR3] Length = 243 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 131/239 (54%), Positives = 172/239 (71%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+RE+ LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRPADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+VVDL LG+R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEQLGARTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ D + + + K S + VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAVQDAVAKLI-AAGKLASSPITD-SVAAISVGVYQGTPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VMT G +VEVQG+AE F++D A+L+LA+ I +LI LQK + + Sbjct: 185 DSRCDTDMNVVMTGKGGLVEVQGTAEGVPFTRDEMNALLDLAQKGIGELIALQKAALGD 243 >gi|254228598|ref|ZP_04922023.1| ribonuclease PH [Vibrio sp. Ex25] gi|151938980|gb|EDN57813.1| ribonuclease PH [Vibrio sp. Ex25] Length = 240 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 63 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D S K + + +KGHVAA+S G+L + DL+Y Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDDVLCDLEYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALAN 240 >gi|262392601|ref|YP_003284455.1| ribonuclease PH [Vibrio sp. Ex25] gi|262336195|gb|ACY49990.1| ribonuclease PH [Vibrio sp. Ex25] Length = 238 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D S K + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALAN 238 >gi|315497101|ref|YP_004085905.1| ribonuclease ph [Asticcacaulis excentricus CB 48] gi|315415113|gb|ADU11754.1| ribonuclease PH [Asticcacaulis excentricus CB 48] Length = 250 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 124/237 (52%), Positives = 169/237 (71%), Gaps = 4/237 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R S RQ +Q+R+++L V++YAEGSCL+ G T +L TA++E+ VP +++ GW+T Sbjct: 13 FRPSNRQADQLRKVTLETGVTRYAEGSCLITVGHTKVLATASVEQGVPPFLKGKGQGWVT 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 73 AEYGMLPRSTHTRSRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQ 132 Query: 121 ADGGTRTAAITGAWVALH-DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTR A+IT AWVAL C + +E K + + VAA+SCG+ P++DLDY Sbjct: 133 ADGGTRCASITAAWVALSLACDKLLE---QKLISASPIIDQVAAVSCGVFENVPVLDLDY 189 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDST + D+NFV+T SGHIVE+Q + E+ FS+D F + +LA +L LQ++ Sbjct: 190 DEDSTAETDSNFVLTGSGHIVEIQATGEKRGFSRDEFNTLFDLATQGATELFALQRE 246 >gi|328471748|gb|EGF42625.1| ribonuclease PH [Vibrio parahaemolyticus 10329] Length = 238 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D S K + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDEVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I ++I QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIIAAQKAALAN 238 >gi|71278026|ref|YP_266880.1| ribonuclease PH [Colwellia psychrerythraea 34H] gi|123634261|sp|Q48AN3|RNPH_COLP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|71143766|gb|AAZ24239.1| ribonuclease PH [Colwellia psychrerythraea 34H] Length = 237 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 129/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R +++TR+ + +AEGS L++FGDT ++ TAT+E VP +++ GW+T Sbjct: 1 MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVPRFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA SG+Q GR+ EI R+I RALR+ VDL ALG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L +M + + LK +AA+S G+ G P+ DLDY Sbjct: 121 ADGGTRTAAITGACVALVDALNYMR--AKDIIKTNPLKHMIAAVSVGIYKGEPVADLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMTD+G ++EVQG+AE FS + AML LAK+ I +L LQK +S Sbjct: 179 EDSAADTDMNVVMTDTGKLIEVQGTAEEEPFSFEEMQAMLELAKNGINELFDLQKAALS 237 >gi|329847441|ref|ZP_08262469.1| ribonuclease PH [Asticcacaulis biprosthecum C19] gi|328842504|gb|EGF92073.1| ribonuclease PH [Asticcacaulis biprosthecum C19] Length = 250 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 124/238 (52%), Positives = 167/238 (70%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R S R+ +QMR ++L V++YAEGSCLV FG T +L TA++E VP +++ GW+T Sbjct: 13 IRPSNRKPDQMRNVTLETGVTRYAEGSCLVTFGHTRVLVTASVETGVPSFLKGKGQGWVT 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R +REA +G+Q GR+QEIQR+IGR++R+V+DL ALG RQI +DCDV+Q Sbjct: 73 AEYGMLPRSTHTRSRREAATGKQSGRTQEIQRLIGRSMRAVIDLKALGERQITLDCDVLQ 132 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL + ++K L VAAISCG+ P++DLDY Sbjct: 133 ADGGTRTASITGAWVALAAACDKL--VADKIIEKSPLLDQVAAISCGIFEAVPVLDLDYD 190 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + DANFV+T SGH VE+Q + E+ FS+ F + +LA ++L LQ V+ Sbjct: 191 EDSNAETDANFVITGSGHAVEIQATGEKRGFSRQEFDTLYDLALKGTSELFALQNQVL 248 >gi|253997760|ref|YP_003049823.1| ribonuclease PH [Methylovorus sp. SIP3-4] gi|253984439|gb|ACT49296.1| ribonuclease PH [Methylovorus sp. SIP3-4] Length = 238 Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 129/234 (55%), Positives = 166/234 (70%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R I + R +K+AEGS LVKFGDTH+L TA+++EKVP ++R GW+T Sbjct: 1 MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD + + + L+ VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALHDAISRL--LAQGLISESPLRDSVAAVSVGVYQGTPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS D D N VMT SG VE+QG+AE F + ML+LA I +L LQ Sbjct: 179 EDSDCDTDMNVVMTGSGGYVEIQGTAEGVPFQRADMDRMLDLAAAGIRELTSLQ 232 >gi|238026484|ref|YP_002910715.1| ribonuclease PH [Burkholderia glumae BGR1] gi|237875678|gb|ACR28011.1| Ribonuclease PH [Burkholderia glumae BGR1] Length = 243 Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 132/234 (56%), Positives = 170/234 (72%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+RE+ LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRQADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+VVDL LG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEHLGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ D + + K S + VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAVQDAVAKLV-ADGKLPRSPI-SDSVAAISVGVYQGTPLLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT +G +VEVQG+AE A F++ A+L+LA+ I +LI LQK Sbjct: 185 DSRCDTDMNVVMTGAGGLVEVQGTAEGAPFTRAEMDALLDLAQKGIGELIALQK 238 >gi|226941559|ref|YP_002796633.1| RnpH [Laribacter hongkongensis HLHK9] gi|254808590|sp|C1DCK5|RNPH_LARHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226716486|gb|ACO75624.1| RnpH [Laribacter hongkongensis HLHK9] Length = 238 Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 125/235 (53%), Positives = 169/235 (71%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R + R +++AEGS LV+FGDT ++ TAT+EE VP +++ GW+T Sbjct: 1 MRPSQRAASELRPVRFIRHYTRHAEGSVLVEFGDTKVICTATVEESVPGFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+Q GR+QEIQR+IGR+LR+VVDL LG RQI++DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GAWVAL D + + + L+ HVAA+S GM+ G P++DLDY Sbjct: 121 ADGGTRTASISGAWVALADAIDGL--MAKGLLTENPLRDHVAAVSVGMVDGQPVLDLDYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT G VE+QG+AE FS++ A+L LA + I ++ LQ+ Sbjct: 179 EDSGCDTDMNVVMTGQGGFVEIQGTAEGVPFSREDMQALLALADEGIRAIVGLQQ 233 >gi|56694936|ref|YP_165281.1| ribonuclease PH [Ruegeria pomeroyi DSS-3] gi|81350765|sp|Q5LWF6|RNPH_SILPO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56676673|gb|AAV93339.1| ribonuclease PH [Ruegeria pomeroyi DSS-3] Length = 237 Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 125/234 (53%), Positives = 168/234 (71%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + +S L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDV--ISDPLVDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS VD NF+MT SG ++EVQ SAE + F++ +L LA+ + +L+ Q Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFNRAQLDQLLGLAEKGVGELVAAQ 232 >gi|86136764|ref|ZP_01055342.1| ribonuclease PH [Roseobacter sp. MED193] gi|85826088|gb|EAQ46285.1| ribonuclease PH [Roseobacter sp. MED193] Length = 237 Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 126/235 (53%), Positives = 171/235 (72%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ N+MR +S+ +K+AEGSCL+K G+TH+L TA+LE +VP +I+ + GW+T Sbjct: 1 MRPSNRELNEMRSVSIETGFTKHAEGSCLIKMGETHVLCTASLEPRVPSFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAAAGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITG WVAL + + + + ++ ++ V+AISCG+ G P++DLDY Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMK-AGEVKIDPLMD-PVSAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NFVMT SG ++EVQ SAE + FS+D +++LA+ +L LQK Sbjct: 179 EDSEAGVDGNFVMTGSGKLIEVQMSAEGSVFSRDQMNQLMDLAEKGTQELAALQK 233 >gi|21759411|sp|Q9AES0|RNPH_PASHA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|13591380|gb|AAK29744.1| ribonuclease PH-like protein [Mannheimia haemolytica] Length = 238 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ+REI +TR ++YAEGS L++FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL+D + + +N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VANGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM G +VEVQG+AE FS +L+LAK I+ L++ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVQDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALA 237 >gi|153837893|ref|ZP_01990560.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810] gi|260902523|ref|ZP_05910918.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037] gi|149748756|gb|EDM59601.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810] gi|308109638|gb|EFO47178.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037] Length = 238 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D S K + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDEVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238 >gi|28896951|ref|NP_796556.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633] gi|260365861|ref|ZP_05778355.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030] gi|260877852|ref|ZP_05890207.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034] gi|260895499|ref|ZP_05903995.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466] gi|33301645|sp|Q87T93|RNPH_VIBPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|28805159|dbj|BAC58440.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633] gi|308088601|gb|EFO38296.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466] gi|308089812|gb|EFO39507.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034] gi|308113474|gb|EFO51014.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030] Length = 238 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D S K + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDEVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238 >gi|126438556|ref|YP_001059966.1| ribonuclease PH [Burkholderia pseudomallei 668] gi|167903809|ref|ZP_02491014.1| ribonuclease PH [Burkholderia pseudomallei NCTC 13177] gi|166228273|sp|A3NC95|RNPH_BURP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|126218049|gb|ABN81555.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 668] Length = 243 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 126/235 (53%), Positives = 173/235 (73%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T Sbjct: 6 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ Sbjct: 66 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + + + + S + +VAAIS GM G P++DLDY Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGMFGGTPVLDLDYD 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQR 238 >gi|27364280|ref|NP_759808.1| ribonuclease PH [Vibrio vulnificus CMCP6] gi|37678463|ref|NP_933072.1| ribonuclease PH [Vibrio vulnificus YJ016] gi|320157673|ref|YP_004190052.1| ribonuclease PH [Vibrio vulnificus MO6-24/O] gi|33301654|sp|Q8DDX4|RNPH_VIBVU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61216003|sp|Q7MPT3|RNPH_VIBVY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|27360398|gb|AAO09335.1| ribonuclease PH [Vibrio vulnificus CMCP6] gi|37197203|dbj|BAC93043.1| RNase PH [Vibrio vulnificus YJ016] gi|319932985|gb|ADV87849.1| ribonuclease PH [Vibrio vulnificus MO6-24/O] Length = 238 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D S K + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I++++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLESAKKGISEIVAAQKAALAN 238 >gi|167837502|ref|ZP_02464385.1| ribonuclease PH [Burkholderia thailandensis MSMB43] Length = 243 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 127/234 (54%), Positives = 172/234 (73%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVTQLV-AAGKIARSPITD-YVAAISVGVFGGAPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ Sbjct: 185 DSACDTDMNIVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQAGIGELVRLQR 238 >gi|303258091|ref|ZP_07344099.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47] gi|330998696|ref|ZP_08322425.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] gi|302859110|gb|EFL82193.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47] gi|329576435|gb|EGG57947.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] Length = 245 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R I +TR +KYAEGS L++ G T ++ TA++EEKVP W+++ GW+TA Sbjct: 8 RPSGRKADELRPIKITRHYTKYAEGSVLIEVGGTKVICTASVEEKVPGWLKDQGKGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R REA G+Q GR+QEIQR+IGR+LR+VVD+ ALG R I IDCDV QA Sbjct: 68 EYGMLPRATGTRTDREAAKGKQSGRTQEIQRLIGRSLRAVVDMEALGERMIKIDCDVTQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGA+VAL D + + N LKG VAA+S G+ G P+ D DY E Sbjct: 128 DGGTRCASITGAYVALADAVNWL--IKNGSLEKSPLKGQVAALSVGIYEGVPVADFDYDE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D D N VMTD+G VE+QG+AE FS++ A+L LA+D + L Q+ ++ E Sbjct: 186 DHLSDTDMNVVMTDAGKFVELQGTAEGEPFSREDLDALLKLAEDGLKQLFAAQRAALAEE 245 >gi|163802281|ref|ZP_02196176.1| ribonuclease PH [Vibrio sp. AND4] gi|159174086|gb|EDP58896.1| ribonuclease PH [Vibrio sp. AND4] Length = 238 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D S K + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK + N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALEN 238 >gi|156972970|ref|YP_001443877.1| ribonuclease PH [Vibrio harveyi ATCC BAA-1116] gi|269959372|ref|ZP_06173755.1| ribonuclease PH [Vibrio harveyi 1DA3] gi|156524564|gb|ABU69650.1| hypothetical protein VIBHAR_00648 [Vibrio harveyi ATCC BAA-1116] gi|269835809|gb|EEZ89885.1| ribonuclease PH [Vibrio harveyi 1DA3] Length = 240 Score = 258 bits (658), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 63 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D S K + + +KGHVAA+S G+L + DL+Y Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDDVLCDLEYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 240 >gi|330719753|gb|EGG98274.1| Ribonuclease PH [gamma proteobacterium IMCC2047] Length = 238 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 127/239 (53%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+RE+ +TR +K+AEGS LV+FGDT ++ TAT E VP ++R GW+T Sbjct: 1 MRPSGRTPDQLREVKITRNYTKHAEGSVLVEFGDTKVICTATAETGVPHFLRGKGVGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ +D+ LG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAIDMKKLGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + S + +K +AA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGACVALVDAVNSLR--SKGAIKADPIKHRIAAVSVGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N +MTDSG VEVQG+AE+ FS ML LA+ IA+L +LQ+ ++ Sbjct: 179 EDSNAETDLNLIMTDSGGFVEVQGTAEQEPFSATELADMLKLAELGIANLSELQQQALA 237 >gi|153835514|ref|ZP_01988181.1| ribonuclease PH [Vibrio harveyi HY01] gi|148867911|gb|EDL67124.1| ribonuclease PH [Vibrio harveyi HY01] Length = 238 Score = 257 bits (657), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D S K + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238 >gi|299066246|emb|CBJ37430.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum CMR15] Length = 238 Score = 257 bits (657), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 132/239 (55%), Positives = 170/239 (71%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR +++AEGS LV FGDTH+L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA HD + M K QL+ + ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAHDAISVMR---KKGQLAGEPIRDFVAAVSVGVVDGVPVLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ D D N VMT +G VEVQG+AE F++ A+L LA I LI LQK + Sbjct: 178 PEDSSCDTDMNVVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQAL 236 >gi|91784888|ref|YP_560094.1| ribonuclease PH [Burkholderia xenovorans LB400] gi|122970210|sp|Q13V47|RNPH_BURXL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91688842|gb|ABE32042.1| RNAse PH [Burkholderia xenovorans LB400] Length = 246 Score = 257 bits (657), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 129/234 (55%), Positives = 169/234 (72%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVARLL-ATGRIESSPITD-YVAAISVGVYDGLPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I LI QK Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQK 238 >gi|170693638|ref|ZP_02884796.1| ribonuclease PH [Burkholderia graminis C4D1M] gi|170141420|gb|EDT09590.1| ribonuclease PH [Burkholderia graminis C4D1M] Length = 246 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 129/237 (54%), Positives = 171/237 (72%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRLAHQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLL-AAGRIE-SSPISDYVAAISVGVYDGLPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VE+QG+AE FS+D A+L+LA D IA LI QK+ + Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGIATLIAKQKEAL 241 >gi|89900419|ref|YP_522890.1| ribonuclease PH [Rhodoferax ferrireducens T118] gi|89345156|gb|ABD69359.1| RNAse PH [Rhodoferax ferrireducens T118] Length = 243 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 130/241 (53%), Positives = 173/241 (71%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R NQ+R + + R + +AEGS L++FG+T +L TA++EEKVP + + GW+T Sbjct: 5 LRVGARAANQLRAVKIQRGYTMHAEGSVLIEFGNTKVLCTASVEEKVPAHKKGSGQGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+QEIQR+IGRALRSV DLS LG R I +DCDV+Q Sbjct: 65 AEYGMLPRATHSRNEREAARGKQSGRTQEIQRLIGRALRSVFDLSLLGERTIHLDCDVLQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA D + + K QLS + + HVAAIS G++ G P++DL+Y Sbjct: 125 ADGGTRTAAITGAFVAAQDAVTQLL-MQGKLQLSPI-RDHVAAISVGIVDGTPLLDLEYT 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT +G VEVQG+AE A FS+ A+L LA+ I+DL+ LQK + N Sbjct: 183 EDSACDTDMNVVMTGAGQFVEVQGTAEGAAFSRREMDALLALAEQGISDLVALQKISLLN 242 Query: 241 E 241 + Sbjct: 243 K 243 >gi|261491672|ref|ZP_05988254.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494209|ref|ZP_05990709.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310112|gb|EEY11315.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312687|gb|EEY13808.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 238 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 170/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ+REI +TR ++YAEGS L++FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL+D + + ++ + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VADGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LAK I+ L++ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALA 237 >gi|217420445|ref|ZP_03451950.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576] gi|238561030|ref|ZP_00442682.2| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4] gi|251766543|ref|ZP_02264154.2| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20] gi|254196137|ref|ZP_04902562.1| ribonuclease PH [Burkholderia pseudomallei S13] gi|254207704|ref|ZP_04914054.1| ribonuclease PH [Burkholderia mallei JHU] gi|121229702|gb|ABM52220.1| ribonuclease PH [Burkholderia mallei SAVP1] gi|147751598|gb|EDK58665.1| ribonuclease PH [Burkholderia mallei JHU] gi|169652881|gb|EDS85574.1| ribonuclease PH [Burkholderia pseudomallei S13] gi|217395857|gb|EEC35874.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576] gi|238525408|gb|EEP88836.1| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4] gi|243065369|gb|EES47555.1| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20] Length = 295 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 125/235 (53%), Positives = 173/235 (73%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T Sbjct: 58 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 117 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ Sbjct: 118 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 177 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + + + + S + +VAAIS G+ G P++DLDY Sbjct: 178 ADGGTRTASITGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGVFGGTPVLDLDYD 235 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ Sbjct: 236 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQR 290 >gi|126724518|ref|ZP_01740361.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150] gi|126705682|gb|EBA04772.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150] Length = 235 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 125/238 (52%), Positives = 174/238 (73%), Gaps = 3/238 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQMR++ + V+++AEGSCL+K GDTH+L TA+LE VP +++N+ GW+T Sbjct: 1 MRPSGRELNQMRDVVIETNVTRHAEGSCLIKMGDTHVLCTASLEPGVPRFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G Q GR+QEIQR+IGR+LR+ +D ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRACIDRVALGERQITIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + + + ++ H+AA+SCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALRLAVNRLMK-AGEVKTDPIMD-HIAAVSCGIYAGQCVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D NFVMT + +VE+QGSAE ATFS+D F +++LA+ + +L+ QK + Sbjct: 178 EDSEAGTDGNFVMTGAKGMVELQGSAEGATFSRDQFNQLMDLAEKGVDELVAAQKAAV 235 >gi|83950767|ref|ZP_00959500.1| ribonuclease PH [Roseovarius nubinhibens ISM] gi|83838666|gb|EAP77962.1| ribonuclease PH [Roseovarius nubinhibens ISM] Length = 238 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 124/235 (52%), Positives = 172/235 (73%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ V+K+AEGSC+++ GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRALDEMRPVSIETGVTKHAEGSCMIRVGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + S L V A+SCG+ G ++DLDY Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDV--TSDPLVDPVGAVSCGIYAGQLVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NF+MT SG ++E Q SAE +TF++D +L+LA+ + +L +LQ+ Sbjct: 179 EDSEAGVDGNFIMTASGRMIEAQMSAEGSTFTRDQMTGLLDLAEKGVQELAELQR 233 >gi|209966225|ref|YP_002299140.1| ribonuclease PH [Rhodospirillum centenum SW] gi|209959691|gb|ACJ00328.1| ribonuclease PH [Rhodospirillum centenum SW] Length = 239 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/210 (58%), Positives = 157/210 (74%), Gaps = 2/210 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +QMR +SL VSK+AEGSCLV+FGDTH+L TA++E++VP ++R GW+TA Sbjct: 3 RPSGRSLDQMRPVSLETNVSKHAEGSCLVRFGDTHVLCTASVEDRVPPFLRGQGQGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA GRQ GR+QEIQR+IGR+LR+V D+ A+G + IDCDV+QA Sbjct: 63 EYGMLPRATAERTDREAAKGRQTGRTQEIQRLIGRSLRAVTDVKAMGEITVKIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG++VAL +H+ S F +Q L VAA+SCG+ G P++DLDY E Sbjct: 123 DGGTRTAAITGSYVALALAFRHL--TSIGFLKAQPLTDSVAAVSCGLYQGAPVLDLDYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATF 211 DS+ DANFV+T G IVE+QG+AE+ F Sbjct: 181 DSSAQADANFVLTGKGGIVEIQGTAEKTPF 210 >gi|313199824|ref|YP_004038482.1| ribonuclease ph [Methylovorus sp. MP688] gi|312439140|gb|ADQ83246.1| ribonuclease PH [Methylovorus sp. MP688] Length = 238 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 129/234 (55%), Positives = 165/234 (70%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R I + R +K+AEGS LVKFGDTH+L TA+++EKVP ++R GW+T Sbjct: 1 MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD + + + L VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALHDAISRL--LAQGLISESPLLDSVAAVSVGVYQGTPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS D D N VMT SG VE+QG+AE F + ML+LA I +L LQ Sbjct: 179 EDSDCDTDMNVVMTGSGGYVEIQGTAEGVPFQRADMDRMLDLAAAGIRELTTLQ 232 >gi|167644139|ref|YP_001681802.1| ribonuclease PH [Caulobacter sp. K31] gi|189043756|sp|B0T369|RNPH_CAUSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|167346569|gb|ABZ69304.1| ribonuclease PH [Caulobacter sp. K31] Length = 242 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + +R ++L V++YAEGSCL+ FG T +L TAT+EE VP W+RN GW+T Sbjct: 1 MRPSERAPDVLRVVTLETGVNRYAEGSCLISFGHTKVLVTATVEENVPGWMRNKGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATHTRGRREAALGKQSGRTQEIQRLIGRSLRAVVDLKALGERQISLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL + ++ + + G VAA+SCG+ P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALRIAVNYL--LEEGVLKTDPIVGQVAAVSCGVFKDTPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFV+T+ G IVE+Q + E+ F++ F + LA+ I +L Q + +S Sbjct: 179 EDSQAEADSNFVLTNVGDIVEIQATGEKRGFTRGEFEQLFALAEKGIGELFVKQLEAVS 237 >gi|17546878|ref|NP_520280.1| ribonuclease PH [Ralstonia solanacearum GMI1000] gi|21759400|sp|Q8XXF5|RNPH_RALSO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|17429178|emb|CAD15866.1| probable ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein [Ralstonia solanacearum GMI1000] Length = 238 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 131/239 (54%), Positives = 170/239 (71%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR +++AEGS LV FGDTH+L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA HD + M K QL+ + ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAHDAISVMR---KKGQLTGEPIRDFVAAVSVGVVDGVPVLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED++ D D N VMT +G VEVQG+AE F++ A+L LA I LI LQK + Sbjct: 178 PEDASCDTDMNIVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADHGIRTLIGLQKQAL 236 >gi|53720176|ref|YP_109162.1| ribonuclease PH [Burkholderia pseudomallei K96243] gi|53726007|ref|YP_103672.1| ribonuclease PH [Burkholderia mallei ATCC 23344] gi|124386333|ref|YP_001028601.1| ribonuclease PH [Burkholderia mallei NCTC 10229] gi|126449191|ref|YP_001081500.1| ribonuclease PH [Burkholderia mallei NCTC 10247] gi|126454192|ref|YP_001067258.1| ribonuclease PH [Burkholderia pseudomallei 1106a] gi|134280511|ref|ZP_01767222.1| ribonuclease PH [Burkholderia pseudomallei 305] gi|162139483|ref|YP_992156.2| ribonuclease PH [Burkholderia mallei SAVP1] gi|162210051|ref|YP_334425.2| ribonuclease PH [Burkholderia pseudomallei 1710b] gi|167739724|ref|ZP_02412498.1| ribonuclease PH [Burkholderia pseudomallei 14] gi|167816928|ref|ZP_02448608.1| ribonuclease PH [Burkholderia pseudomallei 91] gi|167825331|ref|ZP_02456802.1| ribonuclease PH [Burkholderia pseudomallei 9] gi|167846833|ref|ZP_02472341.1| ribonuclease PH [Burkholderia pseudomallei B7210] gi|167895425|ref|ZP_02482827.1| ribonuclease PH [Burkholderia pseudomallei 7894] gi|167912075|ref|ZP_02499166.1| ribonuclease PH [Burkholderia pseudomallei 112] gi|167920049|ref|ZP_02507140.1| ribonuclease PH [Burkholderia pseudomallei BCC215] gi|226193870|ref|ZP_03789472.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|242317328|ref|ZP_04816344.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254175672|ref|ZP_04882332.1| ribonuclease PH [Burkholderia mallei ATCC 10399] gi|254181028|ref|ZP_04887626.1| ribonuclease PH [Burkholderia pseudomallei 1655] gi|254191874|ref|ZP_04898377.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237] gi|254202370|ref|ZP_04908733.1| ribonuclease PH [Burkholderia mallei FMH] gi|254259675|ref|ZP_04950729.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a] gi|254298852|ref|ZP_04966302.1| ribonuclease PH [Burkholderia pseudomallei 406e] gi|254356396|ref|ZP_04972672.1| ribonuclease PH [Burkholderia mallei 2002721280] gi|61215844|sp|Q62HZ8|RNPH_BURMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215857|sp|Q63RV5|RNPH_BURPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228270|sp|A3MML4|RNPH_BURM7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228271|sp|A2S9I2|RNPH_BURM9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228272|sp|A3NY37|RNPH_BURP0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|52210590|emb|CAH36573.1| ribonuclease PH [Burkholderia pseudomallei K96243] gi|52429430|gb|AAU50023.1| ribonuclease PH [Burkholderia mallei ATCC 23344] gi|124294353|gb|ABN03622.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10229] gi|126227834|gb|ABN91374.1| ribonuclease PH [Burkholderia pseudomallei 1106a] gi|126242061|gb|ABO05154.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10247] gi|134248518|gb|EBA48601.1| ribonuclease PH [Burkholderia pseudomallei 305] gi|147746617|gb|EDK53694.1| ribonuclease PH [Burkholderia mallei FMH] gi|148025393|gb|EDK83547.1| ribonuclease PH [Burkholderia mallei 2002721280] gi|157808936|gb|EDO86106.1| ribonuclease PH [Burkholderia pseudomallei 406e] gi|157939545|gb|EDO95215.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237] gi|160696716|gb|EDP86686.1| ribonuclease PH [Burkholderia mallei ATCC 10399] gi|184211567|gb|EDU08610.1| ribonuclease PH [Burkholderia pseudomallei 1655] gi|225934175|gb|EEH30160.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|242140567|gb|EES26969.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254218364|gb|EET07748.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a] Length = 243 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 125/235 (53%), Positives = 173/235 (73%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T Sbjct: 6 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ Sbjct: 66 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + + + + S + +VAAIS G+ G P++DLDY Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGVFGGTPVLDLDYD 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQR 238 >gi|153876824|ref|ZP_02003946.1| ribonuclease PH [Beggiatoa sp. PS] gi|152066712|gb|EDN66054.1| ribonuclease PH [Beggiatoa sp. PS] Length = 240 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 123/242 (50%), Positives = 173/242 (71%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N++R+I+ TR + +AEGS L +FG T ++ +++E+VP +I++ K GW+T Sbjct: 1 MRPSGRAPNELRQINFTRHYTCHAEGSVLAEFGRTKVICNVSIDERVPRFIKDKKSGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA GRQGGR+ EIQR+IGR+LR+VV+L ALG R + IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMSREASRGRQGGRTLEIQRLIGRSLRAVVNLEALGERTVNIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+++AL D +QH+ + + G +AA+S G+ G PI+DLDY Sbjct: 121 ADGGTRTAAITGSYIALVDAMQHL--LKKRLIRKNPIHGAIAAVSVGIYKGIPILDLDYN 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N +M D+ VE+QG+AE F QD ML+LAK+ + L++ Q V+++ Sbjct: 179 EDSDAETDMNIIMNDAFAYVEIQGTAEGHAFRQDELQTMLSLAKEGTSQLLEKQNAVLND 238 Query: 241 EV 242 E+ Sbjct: 239 EL 240 >gi|163732970|ref|ZP_02140414.1| ribonuclease PH [Roseobacter litoralis Och 149] gi|161393505|gb|EDQ17830.1| ribonuclease PH [Roseobacter litoralis Och 149] Length = 237 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 121/235 (51%), Positives = 171/235 (72%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ N+MR +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRELNEMRAVSIETGFTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++RE+ +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG W+AL + + + +S L VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWIALRLAVNKLMKAGDV--ISDPLVDPVAAISCGIYAGQPVMDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD NF+MT + ++EVQ SAE +TFS+D +++LA+ + +L+ Q+ Sbjct: 179 EDSEAGVDGNFIMTGTKRLIEVQMSAEGSTFSRDQMNQLMDLAEKGVGELVTAQR 233 >gi|319761729|ref|YP_004125666.1| ribonuclease ph [Alicycliphilus denitrificans BC] gi|317116290|gb|ADU98778.1| ribonuclease PH [Alicycliphilus denitrificans BC] Length = 245 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 129/239 (53%), Positives = 170/239 (71%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TRR + +AEGS L++FG+T +L TA++EEKVP R + GW+TA Sbjct: 9 RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R + IDCDVIQA Sbjct: 69 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA HD + + + K S + G VAA+S G++ G P++DL+Y E Sbjct: 129 DGGTRTAAITGAWVAAHDAVGTLL-AAGKVAASPI-TGAVAAVSVGIVQGQPLLDLEYVE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D D N VMT +GH VEVQG+AE A FS+ +L LA+ IA+L+ LQ++ + N Sbjct: 187 DVACDTDMNVVMTGAGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELVLLQQESLRN 245 >gi|296160047|ref|ZP_06842867.1| ribonuclease PH [Burkholderia sp. Ch1-1] gi|295889793|gb|EFG69591.1| ribonuclease PH [Burkholderia sp. Ch1-1] Length = 246 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 129/234 (55%), Positives = 168/234 (71%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGVRTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVARLL-ATGRIESSPITD-YVAAISVGVYDGLPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I LI QK Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQK 238 >gi|121593343|ref|YP_985239.1| ribonuclease PH [Acidovorax sp. JS42] gi|120605423|gb|ABM41163.1| RNAse PH [Acidovorax sp. JS42] Length = 244 Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 131/239 (54%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R I +TR + +AEG+ L++FG+T +L TA++EEKVP R + GW+TA Sbjct: 8 RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I IDCDVIQA Sbjct: 68 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA D + + + K S L G VAA+S G++ G P++DL+Y E Sbjct: 128 DGGTRTAAITGAWVAAQDAVNTLL-AAGKISASP-LTGAVAAVSVGIVQGQPLLDLEYVE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D D N VMT +GH VEVQG+AE ATFS+ +L LA+ IA+L+ LQ+ + N Sbjct: 186 DVACDTDMNVVMTGTGHYVEVQGTAEGATFSRQEMDQLLALAEKGIAELLALQRQSLRN 244 >gi|163797073|ref|ZP_02191028.1| molecular chaperone DnaK [alpha proteobacterium BAL199] gi|159177589|gb|EDP62142.1| molecular chaperone DnaK [alpha proteobacterium BAL199] Length = 243 Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 131/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +RE+ L +K+AEGSCLV+FGDTH+L TA++E++VP W++ GW+TA Sbjct: 8 RPSGRAVDALREVRLEPGFAKHAEGSCLVRFGDTHVLCTASVEDRVPPWLKGGGKGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSV DL ALG RQI +DCDVIQA Sbjct: 68 EYGMLPRSTHTRTDREAARGKQSGRTQEIQRLIGRSLRSVTDLVALGERQIRVDCDVIQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG+WVALH + + L L VAAISCG+ G P++DLDY E Sbjct: 128 DGGTRTAAITGSWVALHQAMSTLLRFGAVKSLP--LTDKVAAISCGIYKGQPVLDLDYAE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + DANFV+T G IVE+Q +AE F + F +L LA+ I +L LQ++ ++ Sbjct: 186 DSNCETDANFVLTGRGGIVEIQATAEAEPFEEAAFHELLRLARKGIGELAVLQEEAVA 243 >gi|304320412|ref|YP_003854055.1| ribonuclease PH [Parvularcula bermudensis HTCC2503] gi|303299314|gb|ADM08913.1| ribonuclease PH [Parvularcula bermudensis HTCC2503] Length = 234 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 128/237 (54%), Positives = 167/237 (70%), Gaps = 3/237 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N+MR+++ V++YAEGSCLV+FG+TH+L TA+ EE VP W++N + GW+T Sbjct: 1 MRPSGRAFNEMRDVTFELGVNRYAEGSCLVRFGNTHVLCTASFEENVPPWLKNQRRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE G GR+QEIQR+IGR+LR+VVDL+ALG RQI +DCDV+Q Sbjct: 61 AEYSMLPRATHTRGRRERDKG-PSGRTQEIQRLIGRSLRAVVDLNALGERQIQVDCDVLQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL + S + L VAAISCG+ P+VDLDY Sbjct: 120 ADGGTRTASITGGYVALKQAIDWA--LSAGVLTTSPLTDSVAAISCGLYNRAPVVDLDYD 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDST DANFV T +G IVE+Q +AE F+ D F A+++LAK +L + QK + Sbjct: 178 EDSTAQADANFVFTGTGGIVEIQATAEGDPFADDEFAALVSLAKAACQELSEKQKSL 234 >gi|76580232|gb|ABA49707.1| ribonuclease PH [Burkholderia pseudomallei 1710b] Length = 622 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 125/238 (52%), Positives = 174/238 (73%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T Sbjct: 385 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 444 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ Sbjct: 445 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 504 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + + + + S + +VAAIS G+ G P++DLDY Sbjct: 505 ADGGTRTASITGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGVFGGTPVLDLDYD 562 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ + Sbjct: 563 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAAL 620 >gi|330826509|ref|YP_004389812.1| ribonuclease PH [Alicycliphilus denitrificans K601] gi|329311881|gb|AEB86296.1| Ribonuclease PH [Alicycliphilus denitrificans K601] Length = 245 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 129/239 (53%), Positives = 170/239 (71%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TRR + +AEGS L++FG+T +L TA++EEKVP R + GW+TA Sbjct: 9 RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R + IDCDVIQA Sbjct: 69 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA HD + + + K S + G VAA+S G++ G P++DL+Y E Sbjct: 129 DGGTRTAAITGAWVAAHDAVGTLL-AAGKVAASPI-TGAVAAVSVGIVQGQPLLDLEYVE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D D N VMT +GH VEVQG+AE A FS+ +L LA+ IA+L+ LQ++ + N Sbjct: 187 DVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELMLLQQESLRN 245 >gi|153800847|ref|ZP_01955433.1| ribonuclease PH [Vibrio cholerae MZO-3] gi|124123678|gb|EAY42421.1| ribonuclease PH [Vibrio cholerae MZO-3] Length = 257 Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 125/236 (52%), Positives = 167/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L G + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFTHL---IAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEY 196 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252 >gi|254487308|ref|ZP_05100513.1| ribonuclease PH [Roseobacter sp. GAI101] gi|214044177|gb|EEB84815.1| ribonuclease PH [Roseobacter sp. GAI101] Length = 237 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 122/237 (51%), Positives = 174/237 (73%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ ++MR +S+ +K+AEGS L+K G TH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRKLDEMRAVSVDTDFTKHAEGSALIKMGGTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD SALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG W+AL + + + ++ L VAAISCG+ G ++DLDY Sbjct: 121 ADGGTRCASITGGWIALKLAVNKLMKAGD--VVNDPLADPVAAISCGIYAGQSVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NF+MT +G ++E+Q SAE +T+S+D +++LA+ +++L+++QK V Sbjct: 179 EDSEAGVDGNFIMTGTGRLIEIQMSAEGSTYSRDQMNQLMDLAEKGVSELVEIQKAV 235 >gi|91787235|ref|YP_548187.1| ribonuclease PH [Polaromonas sp. JS666] gi|91696460|gb|ABE43289.1| RNAse PH [Polaromonas sp. JS666] Length = 243 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 128/241 (53%), Positives = 171/241 (70%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R + +R + +TR + YAEGS L++FG T +L TA++EEKVP + + GW+T Sbjct: 5 VRVDARAADALRPVRITRHYTAYAEGSVLIEFGGTKVLCTASVEEKVPGHKKGSGEGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR++RSV DL LG R I +DCDVIQ Sbjct: 65 AEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRSVFDLKKLGERTIYLDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ D + + K Q + +L HVAAIS G++ G P++DL+Y Sbjct: 125 ADGGTRTASITGAFVAVQDAVNQLL-ALGKLQETPILD-HVAAISVGIVQGTPLLDLEYT 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT +G+ VEVQG+AE A FS+ A+L LA+ IA+L+ LQK +SN Sbjct: 183 EDSACDTDMNVVMTGAGNYVEVQGTAEGAAFSRKEMDALLVLAEKGIAELVGLQKKSLSN 242 Query: 241 E 241 E Sbjct: 243 E 243 >gi|205354664|ref|YP_002228465.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226736934|sp|B5RG80|RNPH_SALG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|205274445|emb|CAR39477.1| RNase PH [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629803|gb|EGE36146.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 238 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L+LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLSLARGGIESIVATQKAALEN 238 >gi|309812199|ref|ZP_07705957.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185] gi|308433886|gb|EFP57760.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185] Length = 255 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 166/240 (69%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+RE+ +TR +AEGSCLV+FG T +L A+ E VP W++ GW+T+ Sbjct: 10 RHDGRTPDQLREVRITRNWLDHAEGSCLVEFGRTRVLCAASFTEGVPRWLKGQGTGWVTS 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R REA G+ GGR+ EI R+IGR+LR+V+D ALG I+IDCDV+QA Sbjct: 70 EYEMLPRSTNTRSDREARKGKVGGRTHEISRLIGRSLRAVIDTKALGENTIVIDCDVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + + ++ L VAAIS G++ G P++DLDY E Sbjct: 130 DGGTRTASITGAYVALADAIADAQARGLIAKKAKPLTDSVAAISVGIVAGQPVLDLDYPE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DST + D N VMT SG IVEVQG+AE A FS+D A+L+LA D IADL Q+D ++ + Sbjct: 190 DSTAETDMNVVMTGSGGIVEVQGTAEGAPFSRDELNALLDLAADGIADLTTKQRDALAAD 249 >gi|254512351|ref|ZP_05124418.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11] gi|221536062|gb|EEE39050.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11] Length = 237 Score = 254 bits (649), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 122/224 (54%), Positives = 164/224 (73%), Gaps = 2/224 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N+MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRDLNEMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + +S L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDV--ISDPLVDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS VD NF+MT +G ++EVQ SAE + FS+ +++LA+ Sbjct: 179 EDSEAGVDGNFIMTGTGKLIEVQMSAEGSVFSRTQMDQLMDLAE 222 >gi|222110072|ref|YP_002552336.1| ribonuclease ph [Acidovorax ebreus TPSY] gi|221729516|gb|ACM32336.1| ribonuclease PH [Acidovorax ebreus TPSY] Length = 244 Score = 254 bits (649), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 130/239 (54%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R I +TR + +AEG+ L++FG+T +L TA++EEKVP R + GW+TA Sbjct: 8 RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I IDCDVIQA Sbjct: 68 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA D + + + K S L G VAA+S G++ G P++DL+Y E Sbjct: 128 DGGTRTAAITGAWVAAQDAVNTLL-AAGKISASP-LTGAVAAVSVGIVQGQPLLDLEYVE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D D N VMT +GH VEVQG+AE A FS+ +L LA+ IA+L+ LQ+ + N Sbjct: 186 DVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRQEMDQLLALAEKGIAELVALQRQSLRN 244 >gi|300113393|ref|YP_003759968.1| ribonuclease PH [Nitrosococcus watsonii C-113] gi|299539330|gb|ADJ27647.1| ribonuclease PH [Nitrosococcus watsonii C-113] Length = 239 Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 170/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +++R I TR ++YAEGS LV+FG+T ++ A++E+++P +++ T GWIT Sbjct: 1 MRPSGRAPHELRPIHFTRHYTQYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST NR+ REA GRQGGR+ EIQR+IGRALR+VVDL+ALG + +DCDVIQ Sbjct: 61 AEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRLIGRALRAVVDLAALGEVTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VAL D + + + + G +A++S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGSYVALVDAIHN--RLKKRAIAHSPIHGQIASVSVGIYEGTPVLDLDYR 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST + D N VM ++G +E+QG+AE F + AML LAK+ I L+ Q +V++ Sbjct: 179 EDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLELAKNGITTLLAQQTEVLA 237 >gi|77165901|ref|YP_344426.1| ribonuclease PH [Nitrosococcus oceani ATCC 19707] gi|123593634|sp|Q3J8F0|RNPH_NITOC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|76884215|gb|ABA58896.1| RNAse PH [Nitrosococcus oceani ATCC 19707] Length = 239 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +++R I TR ++YAEGS LV+FG+T ++ A++E+++P +++ T GWIT Sbjct: 1 MRPSGRAPHELRPIHFTRHYTRYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST NR+ REA GRQGGR+ EIQR IGRALR+VVDL+ALG + +DCDVIQ Sbjct: 61 AEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRFIGRALRAVVDLAALGEVTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VAL D + + + + G +A+IS G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGSYVALVDAINNR--LKKRIITHSPIHGQLASISVGIYEGTPVLDLDYR 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST + D N VM ++G +E+QG+AE F + AML+LAK I L+ Q +V++ Sbjct: 179 EDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLDLAKSGINTLLAQQTEVLA 237 >gi|82701201|ref|YP_410767.1| ribonuclease PH [Nitrosospira multiformis ATCC 25196] gi|123545290|sp|Q2YCZ6|RNPH_NITMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|82409266|gb|ABB73375.1| RNAse PH [Nitrosospira multiformis ATCC 25196] Length = 238 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R + +TR +++AEGS L++ GDT ++ TA+++EKVP+++R GW+T Sbjct: 1 MRPSKRRPDQLRSVQITRHYTRHAEGSVLIECGDTRIICTASVDEKVPLFLRGKGQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA G+Q GR+ EIQR+IGRALRSV+DL+ LG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTNERMQREAAKGKQSGRTMEIQRLIGRALRSVMDLTKLGERTIQVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+HD + + + + + GHVAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAVHDAIGTL--LRKQAIEATPITGHVAAVSVGVYEGVPMLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMTD +VE+QG+AE FS++ ML+LA+ I +LI QK+ ++ Sbjct: 179 EDSRCDTDMNIVMTDDLGLVEMQGTAEGMPFSRNDLDMMLDLAQQGIRELIAAQKNALN 237 >gi|254482749|ref|ZP_05095987.1| ribonuclease PH [marine gamma proteobacterium HTCC2148] gi|214037108|gb|EEB77777.1| ribonuclease PH [marine gamma proteobacterium HTCC2148] Length = 240 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 127/238 (53%), Positives = 169/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR Q+R+IS+TR + +AEGS LV FG T ++ TA++EE VP ++R GW+TA Sbjct: 3 RPSGRTPEQLRDISITRNFTCHAEGSVLVSFGKTKVICTASVEEGVPRFLRGKGSGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL LG I IDCDVIQA Sbjct: 63 EYGMLPRSTGSRMGREASRGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTINIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D + +++ K + L +A++S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGALVALVDAINYLQ--RKKIINTDPLLEMMASVSVGIYQGVPVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N +M +SG +EVQG+AE ATF++D AML+LA I +LI+ QK ++ Sbjct: 181 DSAADTDMNVIMGESGGFIEVQGTAEGATFARDELNAMLDLASAGILELIEKQKAALA 238 >gi|292490867|ref|YP_003526306.1| ribonuclease PH [Nitrosococcus halophilus Nc4] gi|291579462|gb|ADE13919.1| ribonuclease PH [Nitrosococcus halophilus Nc4] Length = 239 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +++R I LTR +KYAEGS LV+FGDT ++ TA++E++VP +++ GW+T Sbjct: 1 MRPSGRAPDELRPIRLTRHYTKYAEGSVLVEFGDTRVICTASVEDRVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA GRQGGR+ EIQR+IGR+LR++VDLSALG + IDCDVIQ Sbjct: 61 AEYGMLPRSTNIRMGREAAQGRQGGRTMEIQRLIGRSLRAIVDLSALGEITVTIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + + + G VA++S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALVDAVGSL--LKKRVIAHSPIHGQVASVSVGICEGRPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST + D N +M ++G +E+QG+AE F + AML LAK I L+ Q + ++ Sbjct: 179 EDSTAETDMNVIMNEAGGFIEIQGTAEGHAFRMNELQAMLELAKSGIGTLLAKQTEALAK 238 >gi|241767033|ref|ZP_04764818.1| ribonuclease PH [Acidovorax delafieldii 2AN] gi|241362436|gb|EER58380.1| ribonuclease PH [Acidovorax delafieldii 2AN] Length = 243 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 126/234 (53%), Positives = 166/234 (70%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TRR + +AEGS L++FG+T +L TA++E+KVP R T GW+T+ Sbjct: 6 RSGGRAADQLRPVRITRRYTMHAEGSVLIEFGNTQVLCTASVEDKVPPHQRGTGEGWVTS 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R I +DCDVIQA Sbjct: 66 EYGMLPRATHKRSDREAAKGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTIQLDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA D + + S K S + +G VAAIS G++ G P++DL+Y E Sbjct: 126 DGGTRTAAITGAWVAAQDAVNQLL-ASGKITASPI-RGSVAAISVGIVQGTPLLDLEYAE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D D D N VMT +GH VEVQG+AE A F++ +L LA+ IA+L+ LQ+ Sbjct: 184 DVGCDTDMNVVMTGAGHFVEVQGTAEGAAFTRAEMDQLLGLAEKGIAELVALQQ 237 >gi|113866973|ref|YP_725462.1| ribonuclease PH [Ralstonia eutropha H16] gi|123134290|sp|Q0KD27|RNPH_RALEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|113525749|emb|CAJ92094.1| Ribonuclease PH [Ralstonia eutropha H16] Length = 239 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 128/238 (53%), Positives = 167/238 (70%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTVHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA HD + M + + ++ HVAA+S GM+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAFVAAHDAVSTM--LRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ D D N VMT SG VEVQG+AE A FS+ AM LA+ IA L++ Q++ + Sbjct: 179 EDSSCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQHQREAL 236 >gi|90415478|ref|ZP_01223412.1| ribonuclease PH [marine gamma proteobacterium HTCC2207] gi|90332801|gb|EAS47971.1| ribonuclease PH [marine gamma proteobacterium HTCC2207] Length = 239 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 123/234 (52%), Positives = 166/234 (70%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ Q+R + +TR + +AEGS L++FG T ++ TA++ VP ++R GW+TA Sbjct: 3 RPSGRRPEQLRPVKITRDFTCHAEGSVLIEFGKTKVICTASVTPGVPRFLRGKGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+QEIQR+IGR+LR+ VD+ LG I IDCDVIQA Sbjct: 63 EYGMLPRSTGSRMDREAARGKQGGRTQEIQRLIGRSLRAAVDMKKLGEHTINIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VA+ D ++H++ K L L +A++S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGACVAMVDAIRHLQ--RKKAILDDPLLCMIASVSVGIYKGTPVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS + D N VM G +EVQG+AE A FS++ AML LAK IADL+++QK Sbjct: 181 DSKAETDMNVVMNSEGGFIEVQGTAEAAPFSEEELSAMLGLAKQGIADLVRVQK 234 >gi|153830706|ref|ZP_01983373.1| ribonuclease PH [Vibrio cholerae 623-39] gi|148873826|gb|EDL71961.1| ribonuclease PH [Vibrio cholerae 623-39] Length = 257 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L G + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFTHL---IAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEY 196 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE F + +L +AK IAD++ +QK Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFCHEQLLELLAVAKKGIADIVAVQK 252 >gi|83719437|ref|YP_442125.1| ribonuclease PH [Burkholderia thailandensis E264] gi|167580996|ref|ZP_02373870.1| ribonuclease PH [Burkholderia thailandensis TXDOH] gi|167619073|ref|ZP_02387704.1| ribonuclease PH [Burkholderia thailandensis Bt4] gi|257138313|ref|ZP_05586575.1| ribonuclease PH [Burkholderia thailandensis E264] gi|123537265|sp|Q2SY74|RNPH_BURTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|83653262|gb|ABC37325.1| ribonuclease PH [Burkholderia thailandensis E264] Length = 243 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/234 (53%), Positives = 171/234 (73%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +Q+R++ +TR +K+AEGS LV+FG+T ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADQLRDVRITRHYTKHAEGSVLVEFGETKVICTASVVERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + K S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLV-AAGKIARSPITD-YVAAISVGVFGGAPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I +L++LQ+ Sbjct: 185 DSACDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRLQR 238 >gi|88811938|ref|ZP_01127191.1| ribonuclease PH [Nitrococcus mobilis Nb-231] gi|88790822|gb|EAR21936.1| ribonuclease PH [Nitrococcus mobilis Nb-231] Length = 238 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/238 (52%), Positives = 167/238 (70%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR + +TR +K+AEGS LV+FGDT +L A++EE+VP W+RN+ GWIT Sbjct: 1 MRPSGRHNHEMRAVRITRGFTKHAEGSALVEFGDTKILCNASVEERVPPWLRNSGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R REAV GRQ GR+ EIQR+IGR+LR+ +DL ALG R+IIIDCDV+Q Sbjct: 61 AEYAMLPRATQSRNDREAVRGRQQGRTVEIQRLIGRSLRAAIDLQALGERRIIIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VAL D LQ + L GHVAA+S G+ G ++DLDY Sbjct: 121 ADGGTRTAAITGGYVALADALQSL--IKKGLLKRPPLFGHVAAVSVGIYRGKVVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D N VM + G ++E+QG+AE F + M++LA++ LI+ Q+ + Sbjct: 179 EDAEAETDMNIVMNEVGALIEIQGTAEGHAFRRVELGQMIDLAEEGTRSLIEAQRQAL 236 >gi|148981863|ref|ZP_01816548.1| ribonuclease PH [Vibrionales bacterium SWAT-3] gi|145960714|gb|EDK26055.1| ribonuclease PH [Vibrionales bacterium SWAT-3] Length = 238 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D ++ + D S K + +KGHVAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAIKSLID-SGKLK-KNPMKGHVAAVSVGIVGAEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L LA IAD+++ QK +++ Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMKLLALANKGIADIVEAQKAALAD 238 >gi|229524838|ref|ZP_04414243.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426] gi|229338419|gb|EEO03436.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426] Length = 257 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFAHL---MAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252 >gi|262190382|ref|ZP_06048643.1| ribonuclease PH [Vibrio cholerae CT 5369-93] gi|262033743|gb|EEY52222.1| ribonuclease PH [Vibrio cholerae CT 5369-93] Length = 238 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLTVAKKGIADIVAVQK 233 >gi|307730700|ref|YP_003907924.1| ribonuclease PH [Burkholderia sp. CCGE1003] gi|307585235|gb|ADN58633.1| ribonuclease PH [Burkholderia sp. CCGE1003] Length = 246 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 128/237 (54%), Positives = 169/237 (71%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + + S + VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLL-AAGHIEGSPI-SDFVAAISVGIYDGVPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VE+QG+AE FS++ A+L+LA D IA LI QK+ + Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGIATLIARQKEAL 241 >gi|258625880|ref|ZP_05720755.1| ribonuclease PH [Vibrio mimicus VM603] gi|258581844|gb|EEW06718.1| ribonuclease PH [Vibrio mimicus VM603] Length = 238 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL---MAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233 >gi|121997764|ref|YP_001002551.1| ribonuclease PH [Halorhodospira halophila SL1] gi|166228286|sp|A1WVN7|RNPH_HALHL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|121589169|gb|ABM61749.1| RNAse PH [Halorhodospira halophila SL1] Length = 238 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 120/240 (50%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +++R IS+ R+ +K+AEGS L+ FGDT +L TA++E +VP W+R GW+T Sbjct: 1 MRPSGRRADELRPISIQRQFTKHAEGSVLIGFGDTRVLCTASVEARVPPWLRGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+ EIQR+IGR+LR+ VDL ALG R +++DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQQGRTVEIQRLIGRSLRAAVDLQALGERSVVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D L+ + + + L G VA++S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAFVALTDALEGL--VRQRALPASPLHGQVASVSVGVYRGEPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N VM D+G +E+QG+AE F +D ML LA+ + +L++ Q++ ++ Sbjct: 179 EDGEAETDMNVVMNDAGAFIELQGTAEGHAFRRDELDRMLALAEKGVGELLQHQQEALAT 238 >gi|296533566|ref|ZP_06896135.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957] gi|296266103|gb|EFH12159.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957] Length = 239 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 127/239 (53%), Positives = 164/239 (68%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R +SL V+++AEGSCL++ G T +L TA++E +VP ++R GW+T Sbjct: 1 MRPSGRAADALRSVSLQPGVARHAEGSCLIRMGVTEVLCTASVEGRVPPFLRGKGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD A+G I++DCDVI Sbjct: 61 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRKAMGEVSIVLDCDVIT 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTR AAITGAWVALH L+H C K +S L+ VAAISCG+ G PI+DL+Y Sbjct: 121 ADGGTRCAAITGAWVALHQALEH---CVTKNLISANPLRDQVAAISCGLWEGEPILDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DANFV+T G IVEVQG+AE FS ++ LA+ A+L Q+ I Sbjct: 178 VEDSAAQADANFVLTGKGGIVEVQGTAEGEPFSDAQLLGLMALARKGTAELFAAQRRAI 236 >gi|261213164|ref|ZP_05927447.1| ribonuclease PH [Vibrio sp. RC341] gi|260837582|gb|EEX64276.1| ribonuclease PH [Vibrio sp. RC341] Length = 238 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL---MAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233 >gi|194289073|ref|YP_002004980.1| ribonuclease ph [Cupriavidus taiwanensis LMG 19424] gi|226736900|sp|B3R3N0|RNPH_CUPTR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|193222908|emb|CAQ68913.1| RNase PH [Cupriavidus taiwanensis LMG 19424] Length = 239 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 128/238 (53%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA HD + M + + ++ HVAA+S GM+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAFVAAHDAVATM--LRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT SG VEVQG+AE A FS+ AM LA+ IA L++ Q++ + Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQYQREAL 236 >gi|326565518|gb|EGE15689.1| ribonuclease PH [Moraxella catarrhalis 12P80B1] Length = 238 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 128/239 (53%), Positives = 172/239 (71%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ N++R I R+ +K+AEGS LV FGDT +L TA++E VP W++ GW+T Sbjct: 1 MRSNNRQNNELRPIYFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I IDCDVIQ Sbjct: 61 AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+I+GA VAL D L+H++ + +L+Q L G VAA+S G+ G ++DLDY Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQ---RRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST D D N VMT +G +E+QG+AE F++ AML+LA+ I +I+ QK V+ Sbjct: 178 AEDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVL 236 >gi|262273502|ref|ZP_06051316.1| ribonuclease PH [Grimontia hollisae CIP 101886] gi|262222480|gb|EEY73791.1| ribonuclease PH [Grimontia hollisae CIP 101886] Length = 238 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/235 (52%), Positives = 163/235 (69%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ Q+R +++TR + +AEGS LV FGDT ++ TA++EE VP +++ GWIT Sbjct: 1 MRPSGREVGQIRPVTITRHFTAHAEGSVLVAFGDTKVICTASVEEGVPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEKLGDFTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + S +KGHVAA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGASVALADALNKL--VSEGKLKENPMKGHVAAVSVGIFEGTPICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VM + G ++EVQG+AE F+ + AML+LA I D++ +QK Sbjct: 179 EDSAADTDMNVVMLEDGRMIEVQGTAEAEPFTAEELNAMLSLAAKGIQDIVAIQK 233 >gi|153216091|ref|ZP_01950265.1| ribonuclease PH [Vibrio cholerae 1587] gi|153819951|ref|ZP_01972618.1| ribonuclease PH [Vibrio cholerae NCTC 8457] gi|153821600|ref|ZP_01974267.1| ribonuclease PH [Vibrio cholerae B33] gi|153825939|ref|ZP_01978606.1| ribonuclease PH [Vibrio cholerae MZO-2] gi|227080431|ref|YP_002808982.1| ribonuclease PH [Vibrio cholerae M66-2] gi|229506989|ref|ZP_04396497.1| ribonuclease PH [Vibrio cholerae BX 330286] gi|229509359|ref|ZP_04398842.1| ribonuclease PH [Vibrio cholerae B33] gi|229512476|ref|ZP_04401948.1| ribonuclease PH [Vibrio cholerae TMA 21] gi|229516306|ref|ZP_04405754.1| ribonuclease PH [Vibrio cholerae RC9] gi|229527287|ref|ZP_04416680.1| ribonuclease PH [Vibrio cholerae 12129(1)] gi|229606497|ref|YP_002877145.1| ribonuclease PH [Vibrio cholerae MJ-1236] gi|254291599|ref|ZP_04962388.1| ribonuclease PH [Vibrio cholerae AM-19226] gi|297581663|ref|ZP_06943585.1| ribonuclease PH [Vibrio cholerae RC385] gi|298500852|ref|ZP_07010654.1| ribonuclease PH [Vibrio cholerae MAK 757] gi|9654617|gb|AAF93386.1| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961] gi|124114467|gb|EAY33287.1| ribonuclease PH [Vibrio cholerae 1587] gi|126509515|gb|EAZ72109.1| ribonuclease PH [Vibrio cholerae NCTC 8457] gi|126520887|gb|EAZ78110.1| ribonuclease PH [Vibrio cholerae B33] gi|149740347|gb|EDM54483.1| ribonuclease PH [Vibrio cholerae MZO-2] gi|150422456|gb|EDN14414.1| ribonuclease PH [Vibrio cholerae AM-19226] gi|227008319|gb|ACP04531.1| ribonuclease PH [Vibrio cholerae M66-2] gi|229335295|gb|EEO00779.1| ribonuclease PH [Vibrio cholerae 12129(1)] gi|229346732|gb|EEO11702.1| ribonuclease PH [Vibrio cholerae RC9] gi|229350475|gb|EEO15423.1| ribonuclease PH [Vibrio cholerae TMA 21] gi|229353674|gb|EEO18611.1| ribonuclease PH [Vibrio cholerae B33] gi|229356094|gb|EEO21013.1| ribonuclease PH [Vibrio cholerae BX 330286] gi|229369152|gb|ACQ59575.1| ribonuclease PH [Vibrio cholerae MJ-1236] gi|297534070|gb|EFH72909.1| ribonuclease PH [Vibrio cholerae RC385] gi|297540356|gb|EFH76415.1| ribonuclease PH [Vibrio cholerae MAK 757] Length = 257 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252 >gi|300690924|ref|YP_003751919.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum PSI07] gi|299077984|emb|CBJ50625.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum PSI07] Length = 238 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 129/238 (54%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR +++AEGS LV FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGENTIHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + M + ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAHDAVSVMR--GRGLLAGEPIRDFVAAVSVGVVDGAPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT SG VEVQG+AE F++ A+L LA I LI LQK + Sbjct: 179 EDSACDTDMNVVMTGSGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQAL 236 >gi|296113600|ref|YP_003627538.1| ribonuclease PH [Moraxella catarrhalis RH4] gi|295921294|gb|ADG61645.1| ribonuclease PH [Moraxella catarrhalis RH4] gi|326562662|gb|EGE12964.1| ribonuclease PH [Moraxella catarrhalis 103P14B1] gi|326564700|gb|EGE14918.1| ribonuclease PH [Moraxella catarrhalis 46P47B1] gi|326568642|gb|EGE18713.1| ribonuclease PH [Moraxella catarrhalis BC7] gi|326568768|gb|EGE18838.1| ribonuclease PH [Moraxella catarrhalis BC8] gi|326572636|gb|EGE22625.1| ribonuclease PH [Moraxella catarrhalis CO72] gi|326574233|gb|EGE24181.1| ribonuclease PH [Moraxella catarrhalis 101P30B1] gi|326575018|gb|EGE24947.1| ribonuclease PH [Moraxella catarrhalis O35E] Length = 238 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 128/239 (53%), Positives = 172/239 (71%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ N++R I R+ +K+AEGS LV FGDT +L TA++E VP W++ GW+T Sbjct: 1 MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I IDCDVIQ Sbjct: 61 AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+I+GA VAL D L+H++ + +L+Q L G VAA+S G+ G ++DLDY Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQ---RRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST D D N VMT +G +E+QG+AE F++ AML+LA+ I +I+ QK V+ Sbjct: 178 AEDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVL 236 >gi|85374029|ref|YP_458091.1| ribonuclease PH [Erythrobacter litoralis HTCC2594] gi|122544511|sp|Q2NAJ7|RNPH_ERYLH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|84787112|gb|ABC63294.1| RNase PH [Erythrobacter litoralis HTCC2594] Length = 237 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 4/238 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR I++ +K+AEGSCL+ FGDT +L TA++EE++P W+R GW+T Sbjct: 1 MRPSGRAPDEMRAITIETGYTKHAEGSCLIGFGDTKVLCTASVEERLPPWLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI +DCDVIQ Sbjct: 61 GEYSMLPRATHTRGNREAARGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+I+GAW+AL + ME K + G +AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGAWIALRLAVSGLMEQGQIK---DDPITGKIAAISCGIYNGTPVLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS D DANFV+ + G I E Q +AE AT+ ++ +L LA+ A + K Q + Sbjct: 178 AEDSNADADANFVLIEGGKIAEAQATAEGATYDEEGLMRLLRLAQIGCAQIFKSQDEA 235 >gi|71909462|ref|YP_287049.1| ribonuclease PH [Dechloromonas aromatica RCB] gi|123626372|sp|Q479A2|RNPH_DECAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|71849083|gb|AAZ48579.1| RNAse PH [Dechloromonas aromatica RCB] Length = 238 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/243 (51%), Positives = 169/243 (69%), Gaps = 10/243 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ +Q+R + +TR +++AEGS L++ GDT +L TA++EE VP ++R GW+T Sbjct: 1 MRPSQRQPDQLRTVRITRNFTRHAEGSVLIEMGDTRVLCTASVEENVPPFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV+DL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRALRSVIDLKALGERQITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV----LKGHVAAISCGMLCGYPIVD 176 ADGGTR A+ITGAWVAL+ E C Q ++ ++ HVAAIS G+ G P++D Sbjct: 121 ADGGTRCASITGAWVALY------EACDKLVQAGKLPANPVRDHVAAISVGIYKGAPVLD 174 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 LDY EDS D D N VMT +G IVE+QG+AE F+++ +++LA + L+ Q+ Sbjct: 175 LDYPEDSDCDTDMNVVMTGAGGIVEIQGTAEGEPFTREQMSVLVDLATLGVRHLVAAQQS 234 Query: 237 VIS 239 ++ Sbjct: 235 ALA 237 >gi|229521070|ref|ZP_04410491.1| ribonuclease PH [Vibrio cholerae TM 11079-80] gi|229341955|gb|EEO06956.1| ribonuclease PH [Vibrio cholerae TM 11079-80] Length = 257 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252 >gi|162329623|ref|YP_001218468.2| ribonuclease PH [Vibrio cholerae O395] gi|262167372|ref|ZP_06035080.1| ribonuclease PH [Vibrio cholerae RC27] gi|262024174|gb|EEY42867.1| ribonuclease PH [Vibrio cholerae RC27] Length = 238 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233 >gi|121728030|ref|ZP_01681069.1| ribonuclease PH [Vibrio cholerae V52] gi|121629733|gb|EAX62152.1| ribonuclease PH [Vibrio cholerae V52] gi|146315337|gb|ABQ19876.1| ribonuclease PH [Vibrio cholerae O395] gi|227012057|gb|ACP08267.1| ribonuclease PH [Vibrio cholerae O395] Length = 257 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252 >gi|161582033|ref|NP_229867.2| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961] gi|254851339|ref|ZP_05240689.1| ribonuclease PH [Vibrio cholerae MO10] gi|255744021|ref|ZP_05417975.1| ribonuclease PH [Vibrio cholera CIRS 101] gi|262153620|ref|ZP_06028747.1| ribonuclease PH [Vibrio cholerae INDRE 91/1] gi|21759419|sp|Q9KVD6|RNPH_VIBCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254847044|gb|EET25458.1| ribonuclease PH [Vibrio cholerae MO10] gi|255738286|gb|EET93677.1| ribonuclease PH [Vibrio cholera CIRS 101] gi|262030561|gb|EEY49198.1| ribonuclease PH [Vibrio cholerae INDRE 91/1] gi|327483090|gb|AEA77497.1| Ribonuclease PH [Vibrio cholerae LMA3894-4] Length = 238 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233 >gi|255263447|ref|ZP_05342789.1| ribonuclease PH [Thalassiobium sp. R2A62] gi|255105782|gb|EET48456.1| ribonuclease PH [Thalassiobium sp. R2A62] Length = 235 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 130/239 (54%), Positives = 174/239 (72%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR I++ V+K+AEGSCL++ GDTH+L AT+E++VP ++RN+ GW+T Sbjct: 1 MRPSGRSIDEMRAITIETDVTKHAEGSCLIQCGDTHVLCAATVEDRVPPFMRNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G Q GR+QEIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + +S L+ VAAISCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALKLAVNKLIKAGDI--ISDPLETPVAAISCGIYAGQAVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NFVMT S ++EVQ SAE ATFS+D +++LA+ +A+L +LQ D S Sbjct: 178 EDSEAGVDGNFVMTGS-QMIEVQMSAEGATFSRDQMNELVDLAEKGVAELSRLQIDATS 235 >gi|262277778|ref|ZP_06055571.1| ribonuclease PH [alpha proteobacterium HIMB114] gi|262224881|gb|EEY75340.1| ribonuclease PH [alpha proteobacterium HIMB114] Length = 237 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 119/236 (50%), Positives = 168/236 (71%), Gaps = 2/236 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R ++R + + A+GSCL+KFG+TH++ TA+ E+KVP W++ + GW+TAEY Sbjct: 3 NNRSNTELRPVEIIPNYINNADGSCLIKFGNTHVICTASYEDKVPRWLKGSGKGWVTAEY 62 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLPRST R++REA +G+ GGR+ EIQR+IGR+LR+ +DLS LG I IDCDVIQADG Sbjct: 63 GMLPRSTNERMRREASAGKIGGRTSEIQRLIGRSLRASIDLSLLGENLITIDCDVIQADG 122 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITG +VAL+ C++ ++D K + +K HVAAISCG++ G +VDLDY EDS Sbjct: 123 GTRTASITGGFVALNQCVKILQD--KKLINTNPIKNHVAAISCGVVNGETLVDLDYKEDS 180 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DVDANFV+ + I+E+Q + E+ T S++ ML +K I LI+ QK+ +S Sbjct: 181 GADVDANFVINEKNEIIELQLTGEQTTCSEEKLNEMLKYSKQSIQLLIQKQKEALS 236 >gi|254226345|ref|ZP_04919935.1| ribonuclease PH [Vibrio cholerae V51] gi|125621150|gb|EAZ49494.1| ribonuclease PH [Vibrio cholerae V51] Length = 257 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRQDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252 >gi|260779667|ref|ZP_05888557.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450] gi|260604476|gb|EEX30780.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450] Length = 238 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRQADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ N +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHL--IENGKLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE F+ +L A I +++ QK + N Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 238 >gi|149184525|ref|ZP_01862843.1| RNase PH [Erythrobacter sp. SD-21] gi|148831845|gb|EDL50278.1| RNase PH [Erythrobacter sp. SD-21] Length = 238 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 118/237 (49%), Positives = 163/237 (68%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR I++ +K+AEGSCL+ FG+T +L TA++EE++P W+R GW+T Sbjct: 1 MRPSGRAPDEMRAITIETGYTKHAEGSCLISFGETKVLCTASVEERIPPWLRGRGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R +REA G+Q GR+QEIQR+IGR+LR+VVD LG RQI +DCDVIQ Sbjct: 61 GEYSMLPRATHTRGQREAAKGKQSGRTQEIQRLIGRSLRAVVDHKKLGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GAWVAL + + + + + VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGAWVALRLAVNELMKSGDLVE--DPITAKVAAVSCGIYKGTPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS D DANFV+ + G I E Q +AE A + ++ F +L LA+ AD+ + Q + Sbjct: 179 EDSNADADANFVLIEGGKIAEAQATAEGAPYDEEAFLRLLRLAQMGCADIFRAQDEA 235 >gi|307249253|ref|ZP_07531250.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858777|gb|EFM90836.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 238 Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVNGNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237 >gi|319789115|ref|YP_004150748.1| ribonuclease PH [Thermovibrio ammonificans HB-1] gi|317113617|gb|ADU96107.1| ribonuclease PH [Thermovibrio ammonificans HB-1] Length = 234 Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 126/238 (52%), Positives = 168/238 (70%), Gaps = 7/238 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+RE+ +T K+AEGSCL++FGDT ++ TA++EEKVP ++R T GWIT Sbjct: 2 IRSDGRAPDQLREVKITLDYIKHAEGSCLIEFGDTKVICTASVEEKVPPFLRGTGQGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R+ REA G+ GR+QEIQR+IGR+LRS VDL+ALG I IDCDVIQ Sbjct: 62 AEYAMLPRATAQRMVREAARGKLTGRTQEIQRLIGRSLRSAVDLTALGEVTIWIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL+ L+ ME + ++ +AA+S G++ G ++DL+Y Sbjct: 122 ADGGTRTASITGAFVALYRALEKMEKL-------EAVRSFLAAVSVGIVDGTVLLDLNYE 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N VM + G EVQGSAE F++D MLNLA I +LI QK+V+ Sbjct: 175 EDSMAEVDMNVVMNEKGEFAEVQGSAEGRPFTRDELDRMLNLASKGIMELISKQKEVL 232 >gi|254449788|ref|ZP_05063225.1| ribonuclease PH [Octadecabacter antarcticus 238] gi|198264194|gb|EDY88464.1| ribonuclease PH [Octadecabacter antarcticus 238] Length = 235 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 129/234 (55%), Positives = 172/234 (73%), Gaps = 4/234 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ ++MR IS+ V+++AEGSCL+K GDTH+L TA+++E+VP +++N+ GW+T Sbjct: 1 MRPSGRKIDEMRSISIEVNVTRHAEGSCLIKCGDTHVLCTASIDERVPPFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G Q GR+QEIQR+IGR+LR+ VD ALG RQIIIDCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALGERQIIIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + +S L VAA+SCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMKAGDV--ISDPLLIPVAAVSCGIYAGQSVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS VD NFVMT ++E+Q SAE +TFS+D AM++LA IA+L Q Sbjct: 178 EDSEAGVDGNFVMTGD-KLIEIQMSAEGSTFSRDQMNAMMDLADKGIAELTAAQ 230 >gi|307133086|ref|YP_003885102.1| ribonuclease PH [Dickeya dadantii 3937] gi|306530615|gb|ADN00546.1| ribonuclease PH [Dickeya dadantii 3937] Length = 238 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L AT+E+ VP +++ GWIT Sbjct: 1 MRPTGRSAQQIRPLTLTRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M S K + S LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNGMV-ASGKLKTSP-LKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS D ++L LA+ I D+++ QK +++ Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238 >gi|262163750|ref|ZP_06031490.1| ribonuclease PH [Vibrio mimicus VM223] gi|262027730|gb|EEY46395.1| ribonuclease PH [Vibrio mimicus VM223] Length = 238 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGDPFSHEQLLELLAVAKKGIADIVAVQK 233 >gi|223041894|ref|ZP_03612080.1| ribonuclease PH [Actinobacillus minor 202] gi|240948855|ref|ZP_04753211.1| ribonuclease PH [Actinobacillus minor NM305] gi|223017310|gb|EEF15735.1| ribonuclease PH [Actinobacillus minor 202] gi|240296670|gb|EER47281.1| ribonuclease PH [Actinobacillus minor NM305] Length = 238 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR +KYAEGS L++FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTKYAEGSVLIEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR++VDL ALG R I IDCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAIVDLKALGERTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VALHD + + ++ + LKG VAAIS G++ + DL+Y Sbjct: 121 ADGGTRTASITGACVALHDAINKL--MADGVLKTNPLKGLVAAISVGIVNNNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM D G +VEVQG+AE F+ +L+LA I LI+ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVDDGRLVEVQGTAEGEPFTHMELLQLLDLAHQGIEQLIEAQRKALA 237 >gi|186475433|ref|YP_001856903.1| ribonuclease PH [Burkholderia phymatum STM815] gi|226736895|sp|B2JEI0|RNPH_BURP8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|184191892|gb|ACC69857.1| ribonuclease PH [Burkholderia phymatum STM815] Length = 246 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRTADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPAFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLERLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA D + + + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAARDAVAKLL-ATGRIETSPITD-YVAAISVGVFDGIPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D D N VMT G VE+QG+AE FS+D +L+LA+ IA LI QK+ + ++ Sbjct: 185 DSQCDTDMNVVMTGDGGFVEIQGTAEGVPFSRDEMNKLLDLAQAGIATLIAKQKEALESK 244 >gi|319795588|ref|YP_004157228.1| ribonuclease ph [Variovorax paradoxus EPS] gi|315598051|gb|ADU39117.1| ribonuclease PH [Variovorax paradoxus EPS] Length = 243 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 122/237 (51%), Positives = 169/237 (71%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TR + +AEGS L++FG T +L TA++EE+VP + + GW+TA Sbjct: 6 RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASVEERVPPHKKGSGEGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR++R+V DL+ALG R I +DCDV+QA Sbjct: 66 EYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VA D + + + + S + KGHVAAIS G++ G P++DL+Y E Sbjct: 126 DGGTRTAAITGAFVAAQDAVNKLL-AAGTLKASPI-KGHVAAISVGIVGGTPLLDLEYTE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS+ D D N VMT +GH VEVQG+AE F+++ +L LA+ I +L+ LQK + Sbjct: 184 DSSCDTDMNVVMTGAGHFVEVQGTAEGVAFTREEMNLLLGLAEKGIGELVTLQKQAL 240 >gi|271498722|ref|YP_003331747.1| ribonuclease PH [Dickeya dadantii Ech586] gi|270342277|gb|ACZ75042.1| ribonuclease PH [Dickeya dadantii Ech586] Length = 238 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GWIT Sbjct: 1 MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M S K + S LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNGMV-ASGKLKASP-LKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS D ++L LA+ I D+++ QK +++ Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKATLAD 238 >gi|72119576|gb|AAZ61839.1| RNAse PH [Ralstonia eutropha JMP134] Length = 258 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 128/238 (53%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T Sbjct: 20 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q Sbjct: 80 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA HD + M + + ++ VAA+S GM+ G P++DLDY Sbjct: 140 ADGGTRTAAITGAFVAAHDAISTM--LRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYA 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT SG VEVQG+AE A FS+ AM LA+D IA L++ Q+ + Sbjct: 198 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQAL 255 >gi|187929359|ref|YP_001899846.1| ribonuclease PH [Ralstonia pickettii 12J] gi|309781786|ref|ZP_07676519.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA] gi|226736927|sp|B2U8D8|RNPH_RALPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|187726249|gb|ACD27414.1| ribonuclease PH [Ralstonia pickettii 12J] gi|308919427|gb|EFP65091.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA] Length = 238 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 130/239 (54%), Positives = 167/239 (69%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR+ +++AEGS LV FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRPVTLTRKFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+R+V DL ALG + +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRTVFDLRALGEHTLHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA +D + M + K QL ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMRE---KGQLVGDPVRDFVAAVSVGVVDGVPVLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT SG VEVQG+AE FS+ AML LA I LI LQK + Sbjct: 178 PEDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDAMLGLADQGIRTLISLQKQAL 236 >gi|239817292|ref|YP_002946202.1| ribonuclease PH [Variovorax paradoxus S110] gi|239803869|gb|ACS20936.1| ribonuclease PH [Variovorax paradoxus S110] Length = 243 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 123/234 (52%), Positives = 167/234 (71%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TR + +AEGS L++FG T +L TA++EE+VP R + GW+TA Sbjct: 6 RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASVEERVPPHKRGSGEGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR++R+V DL+ALG R I +DCDV+QA Sbjct: 66 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VA D + + + + ++GHVAAIS G++ G P++DL+Y E Sbjct: 126 DGGTRTAAITGAFVAAQDAVNKL--LAAGTIPASPIRGHVAAISVGIVAGTPLLDLEYTE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT +GH VEVQG+AE A FS++ +L LA+ I +LI LQ+ Sbjct: 184 DSACDTDMNVVMTGAGHFVEVQGTAEGAAFSREEMNLLLGLAEKGIGELIVLQQ 237 >gi|322513841|ref|ZP_08066923.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976] gi|322120328|gb|EFX92267.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976] Length = 238 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADSVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ + Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKAL 236 >gi|161611257|ref|YP_296683.2| ribonuclease PH [Ralstonia eutropha JMP134] Length = 239 Score = 251 bits (641), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 128/238 (53%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA HD + M + + ++ VAA+S GM+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAFVAAHDAISTM--LRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT SG VEVQG+AE A FS+ AM LA+D IA L++ Q+ + Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQAL 236 >gi|323497057|ref|ZP_08102080.1| ribonuclease PH [Vibrio sinaloensis DSM 21326] gi|323317901|gb|EGA70889.1| ribonuclease PH [Vibrio sinaloensis DSM 21326] Length = 238 Score = 251 bits (641), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ + K + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVE-KGKLK-ANPMKGHVAAVSVGILGEDILCDLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE F+ +L A I++++ QK + N Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGISEIVAAQKAALEN 238 >gi|262404946|ref|ZP_06081498.1| ribonuclease PH [Vibrio sp. RC586] gi|262348785|gb|EEY97926.1| ribonuclease PH [Vibrio sp. RC586] Length = 238 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 123/236 (52%), Positives = 165/236 (69%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+ I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL---MAKGQLKKNPMKGHVAAVSVGILGENVLCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233 >gi|83746454|ref|ZP_00943505.1| Ribonuclease PH [Ralstonia solanacearum UW551] gi|207723807|ref|YP_002254205.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein [Ralstonia solanacearum MolK2] gi|207743767|ref|YP_002260159.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein [Ralstonia solanacearum IPO1609] gi|300703571|ref|YP_003745173.1| RNAse ph (tRNA nucleotidyltransferase) [Ralstonia solanacearum CFBP2957] gi|83726785|gb|EAP73912.1| Ribonuclease PH [Ralstonia solanacearum UW551] gi|206589012|emb|CAQ35974.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein [Ralstonia solanacearum MolK2] gi|206595166|emb|CAQ62093.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein [Ralstonia solanacearum IPO1609] gi|299071234|emb|CBJ42552.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum CFBP2957] Length = 238 Score = 251 bits (640), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 127/238 (53%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR +++AEGS LV FGDTH+L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRSVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG + +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTLHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA +D + M + ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMR--GKGLLTGEPIRDFVAAVSVGVVDGVPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT +G VEVQG+AE F++ A+L LA I LI LQK + Sbjct: 179 EDSACDTDMNVVMTGNGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQAL 236 >gi|94499853|ref|ZP_01306389.1| ribonuclease PH [Oceanobacter sp. RED65] gi|94428054|gb|EAT13028.1| ribonuclease PH [Oceanobacter sp. RED65] Length = 238 Score = 251 bits (640), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R++ +TR +K+AEGS LV+ GDT ++ A++E KVP ++R GW+T Sbjct: 1 MRPSGRALDQLRDVKITRNFTKHAEGSVLVEVGDTKVICNASVENKVPPFLRGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EI R+IGR+LR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMIREAAKGKQGGRTVEISRLIGRSLRAAVDLEALGENSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGA VAL D + M + + LK +AA+S G+ G I+DLDY Sbjct: 121 ADGGTRCASITGACVALADAINSMIEAGT--LKASPLKYMIAAVSVGVYEGQAILDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N +M D+G VE+QG+AE F + AML+LAK +A++ ++QK ++N Sbjct: 179 EDSNAETDLNVIMADNGGFVEIQGTAEGEPFQPEELTAMLDLAKKGLAEITEIQKQSLAN 238 >gi|32035564|ref|ZP_00135495.1| COG0689: RNase PH [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207543|ref|YP_001052768.1| ribonuclease PH [Actinobacillus pleuropneumoniae L20] gi|165975512|ref|YP_001651105.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251878|ref|ZP_07338049.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247031|ref|ZP_07529085.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307260507|ref|ZP_07542201.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166228262|sp|A3MYC7|RNPH_ACTP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736879|sp|B0BRL3|RNPH_ACTPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|126096335|gb|ABN73163.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875613|gb|ABY68661.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302649308|gb|EFL79493.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856483|gb|EFM88632.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306869819|gb|EFN01602.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 238 Score = 251 bits (640), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237 >gi|323527036|ref|YP_004229189.1| ribonuclease PH [Burkholderia sp. CCGE1001] gi|323384038|gb|ADX56129.1| ribonuclease PH [Burkholderia sp. CCGE1001] Length = 246 Score = 251 bits (640), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 127/234 (54%), Positives = 166/234 (70%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + + + S + VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLL-AAGRIE-SSPISDFVAAISVGVYDGVPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT +G VE+QG+AE FS+D A+L+LA IA L QK Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASSGIATLTAKQK 238 >gi|312882913|ref|ZP_07742645.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122] gi|309369432|gb|EFP96952.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122] Length = 238 Score = 251 bits (640), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRLADQIRPIKMTRHYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREASSGKQGGRTLEIQRLIARSLRAVVDLEAMGEMMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D + + S K + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFETLVK-SGKLK-HNPMKGHVAAVSVGILGQDILCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE FS+ +L++A+ IAD++K QK + N Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFSRQELNVLLDVAEKGIADIVKAQKLALEN 238 >gi|294085187|ref|YP_003551947.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322] gi|292664762|gb|ADE39863.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322] Length = 245 Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 128/240 (53%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R I+L S +AEGSCLV+ G+TH+L TA+++E+VP ++RN+ GW+TA Sbjct: 3 RPSGRAYDALRSITLESGFSLHAEGSCLVRCGNTHVLCTASVDERVPSFLRNSGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGR+LR+V DL ALG RQI IDCDVIQA Sbjct: 63 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRSLRAVTDLKALGERQIKIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVAL + + + Q + +VAAISCG+ G ++DLDY E Sbjct: 123 DGGTRTASITGAWVALKIACEKLLLAGAITR--QPIIDNVAAISCGVYKGNSVLDLDYDE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS ++DANFVM+ G +VE+Q + E FS+D AML+LA+ A L LQ + + Sbjct: 181 DSNAEIDANFVMSADGGLVEIQATGEEKPFSRDVLNAMLDLAEAGGATLFALQDQAVQTD 240 >gi|261250540|ref|ZP_05943115.1| ribonuclease PH [Vibrio orientalis CIP 102891] gi|323495223|ref|ZP_08100305.1| ribonuclease PH [Vibrio brasiliensis LMG 20546] gi|260939109|gb|EEX95096.1| ribonuclease PH [Vibrio orientalis CIP 102891] gi|323310483|gb|EGA63665.1| ribonuclease PH [Vibrio brasiliensis LMG 20546] Length = 238 Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ + K + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVE-KGKLK-ANPMKGHVAAVSVGILGEDILCDLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE F+ +L A I +++ QK + N Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 238 >gi|222056103|ref|YP_002538465.1| ribonuclease PH [Geobacter sp. FRC-32] gi|254808588|sp|B9M3E3|RNPH_GEOSF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|221565392|gb|ACM21364.1| ribonuclease PH [Geobacter sp. FRC-32] Length = 238 Score = 250 bits (639), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 128/240 (53%), Positives = 170/240 (70%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR E +RE+ +TR K+AEGS LV+FGDT ++ TA++E VP ++R GW+T Sbjct: 1 MRFDGRGEGSLREVRITRNYIKHAEGSVLVEFGDTKVICTASVESSVPPFLRGKGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R REA G+ GGR+ EIQR+IGR+LR+VVD+S LG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATHSRSPREAAKGKVGGRTHEIQRLIGRSLRAVVDMSLLGERSIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VAL D LQ + K +LS + ++ VAA+S G++ G ++DL+Y Sbjct: 121 ADGGTRTASITGAYVALCDALQGL---VAKGELSSLPIREAVAAVSVGIVGGVAVLDLNY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD NFVMT S VEVQG+AE F+ + AM LA D I L ++Q+ V++ Sbjct: 178 VEDSAAEVDMNFVMTSSNRFVEVQGTAEAEPFTIEQMDAMRTLAVDGIKQLFQIQQAVLA 237 >gi|254507299|ref|ZP_05119435.1| ribonuclease PH [Vibrio parahaemolyticus 16] gi|219549759|gb|EED26748.1| ribonuclease PH [Vibrio parahaemolyticus 16] Length = 240 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 63 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ + K + + +KGHVAA+S G+L + DL+Y Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVE-KGKLK-ANPMKGHVAAVSVGILGEDILCDLEYT 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE F+ +L A I +++ QK + N Sbjct: 181 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 240 >gi|258620570|ref|ZP_05715607.1| ribonuclease PH [Vibrio mimicus VM573] gi|262172697|ref|ZP_06040375.1| ribonuclease PH [Vibrio mimicus MB-451] gi|258587085|gb|EEW11797.1| ribonuclease PH [Vibrio mimicus VM573] gi|261893773|gb|EEY39759.1| ribonuclease PH [Vibrio mimicus MB-451] Length = 238 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 123/236 (52%), Positives = 165/236 (69%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+ I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL---MAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233 >gi|307256075|ref|ZP_07537863.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865497|gb|EFM97392.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 238 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRKLNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237 >gi|258544503|ref|ZP_05704737.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826] gi|258520238|gb|EEV89097.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826] Length = 238 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 170/239 (71%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R +S+ R V+KYAEGS L++ GDTH+L TA++EEKVP ++R GW+T Sbjct: 1 MRASNRRPDQLRPVSIERGVNKYAEGSALIRCGDTHVLCTASVEEKVPPFLRGKNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R RE+ G+Q GR+ EIQR+IGR+LR+VVDL+ALG R I IDCDV+Q Sbjct: 61 AEYGMLPRATHERTVRESARGKQQGRTVEIQRLIGRSLRAVVDLTALGERAITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTAAI+G +VAL D ++ + + +L Q L G +AA+S G+ G P++DL+Y Sbjct: 121 ADGGTRTAAISGGFVALADAIRTL---IQQGRLKQNPLHGQLAAVSVGVYRGTPLLDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM D G +E+QG+AE F + AML LA I +++++QK + Sbjct: 178 AEDSEAETDMNIVMNDGGAFIEIQGTAEGHAFRHEEMQAMLALADKGIREIMQVQKQAL 236 >gi|92115321|ref|YP_575249.1| ribonuclease PH [Chromohalobacter salexigens DSM 3043] gi|91798411|gb|ABE60550.1| RNAse PH [Chromohalobacter salexigens DSM 3043] Length = 245 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 126/238 (52%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q REI+L R +++AEGS LV FGDT +L A++E VP W+R + GWIT Sbjct: 6 MRPSGRQPDQPREITLERGYTRHAEGSVLVSFGDTKVLCNASVEAGVPRWLRGKQQGWIT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+VVDL LG I +DCDVIQ Sbjct: 66 AEYGMLPRATHTRGGREATRGKQGGRTLEIQRLIGRSLRTVVDLKKLGEFTITVDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG VAL D + H++ K K V+++S G+ G P+VDLDY Sbjct: 126 ADGGTRTASITGGCVALVDAIHHLQ--REKLIKKDPFKQLVSSVSVGIFKGQPVVDLDYP 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST D N VM + G ++EVQG+AE ATF++ AML+LA+ L Q++ + Sbjct: 184 EDSTAGTDMNVVMAEDGGLIEVQGTAETATFTRQELNAMLDLAEGAGRQLFAHQREAL 241 >gi|114330335|ref|YP_746557.1| ribonuclease PH [Nitrosomonas eutropha C91] gi|122314626|sp|Q0AJ79|RNPH_NITEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|114307349|gb|ABI58592.1| RNAse PH [Nitrosomonas eutropha C91] Length = 242 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R + R QMR I +TR ++AEGS L+++G+T ++ TA++ EKVP +++ GW+TA Sbjct: 3 RYNHRTLAQMRPIRITRHYIRHAEGSVLIEYGETKVICTASVIEKVPPFLKGAGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R++REA G+Q GR+ EIQR+IGRALRSV+DL LG R I IDCDVIQA Sbjct: 63 EYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSVLDLKKLGERTIQIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ + K +K HVAA+S G+L G P++DLDY E Sbjct: 123 DGGTRTASITGAFVALCDAVGYLR--AEKIISENPIKDHVAAVSVGILKGQPLLDLDYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS+ D D N VMT + +VEVQG+AE+ FS+ ML++A+ + +L LQ+ + Sbjct: 181 DSSCDTDLNVVMTGNLGLVEVQGTAEKVVFSRQELDVMLDMAQQGLQELFDLQRKTLET 239 >gi|152979839|ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marseille] gi|151279916|gb|ABR88326.1| ribonuclease PH [Janthinobacterium sp. Marseille] Length = 244 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 125/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R I LTR +K+AEGS L++ GDT ++ TA++E++VP +++ GW+TA Sbjct: 6 RPSGRAADALRAIKLTRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ DL A G R + +DCDVIQA Sbjct: 66 EYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG VA +D + + + LK VAAIS G+ G P++DLDY E Sbjct: 126 DGGTRTAAITGTMVAAYDAFSKL--VAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMTD+GH +EVQG+AE A F + +L+LA+D I DLI LQK ++ Sbjct: 184 DSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDKLLDLAQDGIRDLIVLQKQALA 241 >gi|326559598|gb|EGE10012.1| ribonuclease PH [Moraxella catarrhalis 7169] gi|326567722|gb|EGE17828.1| ribonuclease PH [Moraxella catarrhalis BC1] Length = 238 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/239 (53%), Positives = 171/239 (71%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ N++R I R+ +K+AEGS LV FGDT +L TA++E VP W++ GW+T Sbjct: 1 MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I IDCDVIQ Sbjct: 61 AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+I+GA VAL D L+H++ + +L+Q L G VAA+S G+ G ++DLDY Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQ---RRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST D D N VM +G +E+QG+AE F++ AML+LA+ I +I+ QK V+ Sbjct: 178 AEDSTCDTDLNVVMMQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVL 236 >gi|84514911|ref|ZP_01002274.1| ribonuclease PH [Loktanella vestfoldensis SKA53] gi|84511070|gb|EAQ07524.1| ribonuclease PH [Loktanella vestfoldensis SKA53] Length = 235 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 130/234 (55%), Positives = 169/234 (72%), Gaps = 4/234 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ N+MR +++ V+ +AEGSCL+K G+TH+L TAT++++VP +++N+ GW+T Sbjct: 1 MRPSGRQINEMRNVTIETNVTMHAEGSCLIKCGNTHVLCTATIDDRVPPFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA G Q GR+QEIQR+IGR+LR+ VD ALG RQII+DCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKEG-QSGRTQEIQRLIGRSLRAGVDRVALGERQIIVDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL L ++ +S L VAAISCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALK--LAVLKLMKTGQIISDPLVDPVAAISCGIYAGQEVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS VD NFVMT G +VEVQ SAE ATFS+ +L LA+ +A+L LQ Sbjct: 178 EDSEAGVDGNFVMT-GGRLVEVQMSAEGATFSRAQMDGLLGLAEKGVAELTALQ 230 >gi|304407458|ref|ZP_07389110.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9] gi|304343409|gb|EFM09251.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9] Length = 248 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 170/239 (71%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R I++ V+KYAEGS L+ FGDT +L TAT+E++VP +++ GW+T Sbjct: 1 MRIDGREAAQLRSITIETGVNKYAEGSVLIAFGDTKVLVTATVEDRVPPFMKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R +REA G+ GGR+ EIQR+IGRALRSVVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATQSRNQREAARGKLGGRTMEIQRLIGRALRSVVDLQALGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHM-EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRT +ITGA++AL + + E S K S + ++A++S G++ G P++DL+Y Sbjct: 121 ADGGTRTTSITGAFIALAIAVDKLAEKASFK---SYPITDYLASVSVGVVNGSPVLDLNY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT +G VEVQG+ E + FS+ A+L LA+ I +LI Q++V+ Sbjct: 178 DEDSKAKVDMNVVMTGAGQFVEVQGTGEESPFSRSELDALLGLAETGITELIGKQREVL 236 >gi|190149324|ref|YP_001967849.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307244856|ref|ZP_07526955.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253810|ref|ZP_07535664.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258266|ref|ZP_07540009.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262637|ref|ZP_07544267.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226736878|sp|B3GZP5|RNPH_ACTP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189914455|gb|ACE60707.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306854301|gb|EFM86507.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863294|gb|EFM95234.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867726|gb|EFM99571.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306872060|gb|EFN03774.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 238 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ + Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKAL 236 >gi|291612874|ref|YP_003523031.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1] gi|291582986|gb|ADE10644.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1] Length = 238 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 125/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R I +TR +K+AEGS L++ GDT ++ TA++EE+VP + + GW+T Sbjct: 1 MRPSQRKHDQLRAIRITRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R+ REA G+Q GR+QEIQR+IGR+LR+VVDL LG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMSREAAKGKQSGRTQEIQRLIGRSLRAVVDLGKLGERTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + LK VAAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVALSDAVAAL--MQQGLVKENPLKHAVAAISVGIYQGIPVLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VM +GH VEVQG+AE FS++ +L LAK I L+ +Q+ + Sbjct: 179 EDSDCDTDMNVVMLGNGHFVEVQGTAEGHAFSREEMDTLLELAKHGITQLVAMQQKAL 236 >gi|20807113|ref|NP_622284.1| RNase PH [Thermoanaerobacter tengcongensis MB4] gi|22096086|sp|Q8RC30|RNPH_THETN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|20515606|gb|AAM23888.1| RNase PH [Thermoanaerobacter tengcongensis MB4] Length = 261 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 173/240 (72%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R RE GR GR+ EIQR+IGR+LR+VVDL ALG R I IDCDVIQA Sbjct: 63 EYGMLPRATEVRNPREVTKGRPSGRTMEIQRLIGRSLRAVVDLEALGERTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTA+ITG+++AL D L + + K +L ++ LK VAA+S G++ G ++DL + Sbjct: 123 DGGTRTASITGSFIALADALNKLVE---KGELQKIPLKSFVAAVSVGIVEGNKLLDLSFQ 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED+ VD N VMTD G IVE+QG+ E FS+ +F +L+LA I +IK+QK+V+S+ Sbjct: 180 EDANALVDMNVVMTDKGEIVEIQGTGEGGPFSRQNFEELLDLAAHGIEQIIKIQKEVLSD 239 >gi|256823650|ref|YP_003147613.1| ribonuclease PH [Kangiella koreensis DSM 16069] gi|256797189|gb|ACV27845.1| ribonuclease PH [Kangiella koreensis DSM 16069] Length = 238 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R I++TR+ +K+AEGS L++FG+T +L A++ + VP +++ GWIT Sbjct: 1 MRPSGRTSNQLRPITITRQFTKHAEGSVLIEFGETKVLCNASVVDNVPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ VDLS LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRMDREASRGKQGGRTLEIQRLIGRSLRAAVDLSQLGENTIYVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA +ALHD L HM + LK V ++S G+ G PI+DLDY Sbjct: 121 ADGGTRTASISGASIALHDALFHMRKTG--MIKTNPLKHMVGSVSVGIYKGTPILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM ++G +E+QG+AE TF+ D ML L K I ++ LQ ++ Sbjct: 179 EDSAAETDMNLVMDENGGFIEIQGTAEGETFTGDELMQMLELGKQGIREIFDLQHKAVA 237 >gi|152978104|ref|YP_001343733.1| ribonuclease PH [Actinobacillus succinogenes 130Z] gi|171472953|sp|A6VLF1|RNPH_ACTSZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|150839827|gb|ABR73798.1| ribonuclease PH [Actinobacillus succinogenes 130Z] Length = 238 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ R I +TR +K+AEGS LV+FGDT +L TAT++E VP +++ GW+T Sbjct: 1 MRPNNRAINQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVDESVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + D N LKG VAAIS G++ G P+ DL+Y Sbjct: 121 ADGGTRTASITGACVALIDAVNGLVD--NGTLTVSPLKGLVAAISVGIVDGTPVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +LNLAK + + Q+ +++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCKRIFEAQRAALAD 238 >gi|332188380|ref|ZP_08390105.1| ribonuclease PH [Sphingomonas sp. S17] gi|332011609|gb|EGI53689.1| ribonuclease PH [Sphingomonas sp. S17] Length = 238 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 119/214 (55%), Positives = 157/214 (73%), Gaps = 2/214 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR I++ +++AEGS L+ FGDT +L TA++EE+VP ++R GW+T Sbjct: 1 MRPSGRMPDQMRPITIEPNFTRHAEGSVLIGFGDTKVLVTASVEERVPPFLRGKGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVCDLKALGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GAWVAL + + + S ++ VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTAAISGAWVALRMAVNKL--MAEGKLTSDPIRHKVAAVSCGIHQGTPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 EDS D DANFV+ ++GHI EVQ +AE AT+ ++ Sbjct: 179 EDSNADADANFVLIENGHIAEVQATAEHATYDEE 212 >gi|303250534|ref|ZP_07336731.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251576|ref|ZP_07533483.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650522|gb|EFL80681.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861040|gb|EFM93046.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 238 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL LG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKVLGERTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237 >gi|114326689|ref|YP_743846.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1] gi|114314863|gb|ABI60923.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1] Length = 250 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 122/237 (51%), Positives = 163/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R +SL + +AEGSCL++ G T +L TA+ E ++P ++R T GW+TA Sbjct: 10 RPSGRAADALRSVSLETGFAHHAEGSCLIRMGRTEVLCTASAEPRIPGFLRGTGKGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+VVD A+G I +DCDV+ A Sbjct: 70 EYGMLPRATHKRGDREAARGKQSGRTQEIQRLIGRALRAVVDRDAMGEMSITLDCDVLNA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A++TGA+VAL M + L G VAA+SCG++ G P++DLDY E Sbjct: 130 DGGTRCASVTGAYVALSLAFHKM--VKAGVLKAVPLHGQVAAVSCGVVGGQPVLDLDYIE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS + D+NFV+TD+G IVE+QG+AE A FS+ F AML LA+ A L +Q+D I Sbjct: 188 DSGAEADSNFVLTDAGGIVEIQGTAEGAPFSEADFSAMLGLARQGTAQLFTMQRDAI 244 >gi|241663552|ref|YP_002981912.1| ribonuclease PH [Ralstonia pickettii 12D] gi|240865579|gb|ACS63240.1| ribonuclease PH [Ralstonia pickettii 12D] Length = 238 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 130/239 (54%), Positives = 166/239 (69%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR +++AEGS LV FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRPVTLTRNFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DL ALG + +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLRALGEHTLHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA +D + M + K QL ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMRE---KGQLVGNPIRDFVAAVSVGVVDGVPVLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT SG VEVQG+AE FS+ A+L LA I LI LQK + Sbjct: 178 PEDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDALLGLADQGIRTLIGLQKQAL 236 >gi|330505631|ref|YP_004382500.1| ribonuclease PH [Pseudomonas mendocina NK-01] gi|328919917|gb|AEB60748.1| ribonuclease PH [Pseudomonas mendocina NK-01] Length = 239 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 122/234 (52%), Positives = 166/234 (70%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALIDALKVLK--KRGALKGEPLKQMIAAVSVGIYQGEPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS + D N VMT++G +EVQG+AE A F D F AML LA+ + ++ +LQK Sbjct: 181 DSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPDEFNAMLALAQKGMNEIFELQK 234 >gi|94309797|ref|YP_583007.1| ribonuclease PH [Cupriavidus metallidurans CH34] gi|166228306|sp|Q1LQ38|RNPH_RALME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|93353649|gb|ABF07738.1| ribonuclease PH [Cupriavidus metallidurans CH34] Length = 238 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R I+LTR+ +++AEGS L FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRAADALRPITLTRQYTRHAEGSVLSAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG I +DCDV+Q Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTIHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHM-EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTAAITGA+VA HD + M D K + ++ VAA+S GM+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAFVAAHDAVSAMLRDGQIK---ASPIRDFVAAVSVGMVNGVPVLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT SG VEVQG+AE FS+ AM LA+ IA+L++ QK + Sbjct: 178 AEDSNCDTDMNVVMTGSGGFVEVQGTAEGTPFSRADLDAMTRLAEAGIAELVRHQKQAL 236 >gi|126734415|ref|ZP_01750162.1| ribonuclease PH [Roseobacter sp. CCS2] gi|126717281|gb|EBA14145.1| ribonuclease PH [Roseobacter sp. CCS2] Length = 235 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 125/239 (52%), Positives = 173/239 (72%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ N+MRE+S+ V+ +AEGSCL+K G+TH+L TAT++E+VP +++N+ GW+T Sbjct: 1 MRPSGRQTNEMREVSIETGVTMHAEGSCLIKCGNTHVLCTATIDERVPPFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G Q GR+QEIQR+IGR+LR+ VD AL RQI++DCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALSERQIVVDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + +S L VAAISCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMKAGDV--ISDPLIDPVAAISCGIYAGQEVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NFVMT G ++E+Q SAE +TF++ +++LA+ + +L +Q +S Sbjct: 178 EDSEAGVDGNFVMT-GGKMIEIQMSAEGSTFTRAQMDGLVDLAEKGVGELTAIQLAAVS 235 >gi|256752250|ref|ZP_05493114.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1] gi|256748902|gb|EEU61942.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1] Length = 261 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 121/241 (50%), Positives = 172/241 (71%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG+++AL D L + + + ++ LKG VAA+S G++ G ++DL + E Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKIP--LKGFVAAVSVGIVEGNELLDLSFQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+S+ Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEVLSDI 240 Query: 242 V 242 V Sbjct: 241 V 241 >gi|146280858|ref|YP_001171011.1| ribonuclease PH [Pseudomonas stutzeri A1501] gi|166228304|sp|A4VGR8|RNPH_PSEU5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145569063|gb|ABP78169.1| ribonuclease PH [Pseudomonas stutzeri A1501] gi|327479126|gb|AEA82436.1| ribonuclease PH [Pseudomonas stutzeri DSM 4166] Length = 240 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 168/239 (70%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ TA++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTASIETGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + IDCDVIQA Sbjct: 63 EYGMLPRATGERNQREAARGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VA+ D L+ ++ + +K +AA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGAMVAVIDALKVLKK-RGGLKGGDPVKQMIAAVSVGIYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMTD+G +EVQG+AE A F D AML LA D + L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFHADELNAMLALAHDGVRQLFELQRAALAD 240 >gi|139438503|ref|ZP_01772019.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC 25986] gi|133776042|gb|EBA39862.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC 25986] Length = 241 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 124/238 (52%), Positives = 166/238 (69%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR N++R + LTR V K+A GSCL +FGDT +L AT+EE VP W + K GW+TA Sbjct: 8 RANGRAANELRPVKLTRGVMKHAHGSCLAEFGDTRVLCAATIEEGVPGWRKGAKAGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP STG R KRE + + GRS EI+R+IGR+LR+VV++ ALG + +DCDVIQA Sbjct: 68 EYAMLPASTGKRCKREYANRK--GRSMEIERLIGRSLRTVVNMKALGEYTVTVDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVALHD L + ++ L G VAAIS G++ G ++DLDY E Sbjct: 126 DGGTRTASITGAWVALHDALAMWVEAGKIERIP--LTGQVAAISMGVVDGNTMLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G I+E+QG+ E+A F + A+L+L IA+LI+LQ+ ++ Sbjct: 184 DSHAEVDMNLVATDTGEIIELQGTGEQAPFDRKRLNALLDLGDKGIAELIELQRQALA 241 >gi|83648974|ref|YP_437409.1| ribonuclease PH [Hahella chejuensis KCTC 2396] gi|123530517|sp|Q2S8P0|RNPH_HAHCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|83637017|gb|ABC32984.1| ribonuclease PH [Hahella chejuensis KCTC 2396] Length = 238 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q R+I +T+ +K+AEGS LV+FGDT ++ TAT+E VP ++R GW+T Sbjct: 1 MRPSGRQPDQTRDIKITKNYTKHAEGSVLVEFGDTKVICTATVENGVPRFLRGEDQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ VDL + I IDCDVIQ Sbjct: 61 AEYGMLPRATGTRNQREAARGKQGGRTLEIQRLIGRSLRAAVDLKKMPDISITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VA+ D + + + + + +L VAAIS G+ G P+VDLDY Sbjct: 121 ADGGTRTASITGGFVAMADAINSLL-AKGQLKNNPILH-KVAAISVGVYEGVPVVDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMTD +EVQG+AE A FS AML+LA I L Q++V+ + Sbjct: 179 EDSKAETDMNVVMTDQDGFIEVQGTAEAAPFSSAELTAMLDLAGKGIRQLFVAQEEVLQS 238 >gi|254475610|ref|ZP_05088996.1| ribonuclease PH [Ruegeria sp. R11] gi|214029853|gb|EEB70688.1| ribonuclease PH [Ruegeria sp. R11] Length = 227 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 122/225 (54%), Positives = 161/225 (71%), Gaps = 2/225 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ T GW+TAEYGMLPR+T Sbjct: 1 MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R++REA G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+QADGGTR A+I Sbjct: 61 NTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTRCASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TG WVAL + + + L VAA+SCG+ G P++DLDY EDS VD N Sbjct: 121 TGGWVALRLAVNKLMKAGD--VTIDPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 F+MT SG ++EVQ SAE + FS+D +++LA A+L ++QK Sbjct: 179 FIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTAELAEIQK 223 >gi|251791523|ref|YP_003006244.1| ribonuclease PH [Dickeya zeae Ech1591] gi|247540144|gb|ACT08765.1| ribonuclease PH [Dickeya zeae Ech1591] Length = 238 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GWIT Sbjct: 1 MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + K + S LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNGLV-AGGKLKASP-LKGMVAAVSVGIVKGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS D ++L LA+ I D+++ QK +++ Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238 >gi|167038078|ref|YP_001665656.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039210|ref|YP_001662195.1| ribonuclease PH [Thermoanaerobacter sp. X514] gi|300915534|ref|ZP_07132845.1| ribonuclease PH [Thermoanaerobacter sp. X561] gi|307267211|ref|ZP_07548716.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1] gi|307723791|ref|YP_003903542.1| ribonuclease PH [Thermoanaerobacter sp. X513] gi|320116486|ref|YP_004186645.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326390883|ref|ZP_08212434.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200] gi|226736946|sp|B0KBM5|RNPH_THEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736947|sp|B0K3T4|RNPH_THEPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166853450|gb|ABY91859.1| ribonuclease PH [Thermoanaerobacter sp. X514] gi|166856912|gb|ABY95320.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300888432|gb|EFK83583.1| ribonuclease PH [Thermoanaerobacter sp. X561] gi|306917760|gb|EFN48029.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1] gi|307580852|gb|ADN54251.1| ribonuclease PH [Thermoanaerobacter sp. X513] gi|319929577|gb|ADV80262.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993031|gb|EGD51472.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200] Length = 261 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 121/241 (50%), Positives = 172/241 (71%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG+++AL D L + + + ++ LKG VAA+S G++ G ++DL + E Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKIP--LKGFVAAVSVGIVEGNELLDLSFQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+S+ Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEVLSDI 240 Query: 242 V 242 V Sbjct: 241 V 241 >gi|289577832|ref|YP_003476459.1| ribonuclease PH [Thermoanaerobacter italicus Ab9] gi|289527545|gb|ADD01897.1| ribonuclease PH [Thermoanaerobacter italicus Ab9] Length = 261 Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 123/242 (50%), Positives = 174/242 (71%), Gaps = 4/242 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTA+ITG+++AL D L + + K +S++ LKG VAA+S G++ G ++DL + Sbjct: 123 DGGTRTASITGSFIALADALNKLVE---KGDISKIPLKGFVAAVSVGIVDGNKLLDLSFQ 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+S+ Sbjct: 180 EDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEVLSD 239 Query: 241 EV 242 V Sbjct: 240 IV 241 >gi|163737986|ref|ZP_02145402.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis BS107] gi|161388602|gb|EDQ12955.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis BS107] Length = 227 Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 120/225 (53%), Positives = 165/225 (73%), Gaps = 2/225 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+TAEYGMLPR+T Sbjct: 1 MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R++REA G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+QADGGTR A+I Sbjct: 61 NTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTRCASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TG WVAL + + + + ++ ++ VAA+SCG+ G P++DLDY EDS VD N Sbjct: 121 TGGWVALRLAVNKLMK-TGEVKIDPLVD-PVAAVSCGIYAGQPVLDLDYPEDSEAGVDGN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 F+MT SG ++EVQ SAE + FS++ +++LA A+L +LQK Sbjct: 179 FIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQK 223 >gi|86146528|ref|ZP_01064850.1| ribonuclease PH [Vibrio sp. MED222] gi|218708240|ref|YP_002415861.1| ribonuclease PH [Vibrio splendidus LGP32] gi|254808602|sp|B7VHJ7|RNPH_VIBSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|85835585|gb|EAQ53721.1| ribonuclease PH [Vibrio sp. MED222] gi|218321259|emb|CAV17209.1| Ribonuclease PH [Vibrio splendidus LGP32] Length = 238 Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 120/240 (50%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+VVDL +G I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D + + S K + +KGHVAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAINSLL-ASGKLK-KNPMKGHVAAVSVGIVGAQALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L LA IAD+++ QK +++ Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGIADIVEAQKAALAD 238 >gi|260770721|ref|ZP_05879651.1| ribonuclease PH [Vibrio furnissii CIP 102972] gi|260614302|gb|EEX39491.1| ribonuclease PH [Vibrio furnissii CIP 102972] gi|315178484|gb|ADT85398.1| ribonuclease PH [Vibrio furnissii NCTC 11218] Length = 238 Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNNRAADQVRPIQITRHYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGELMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D + ++ +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFDKL--VADGKLKKNPMKGHVAAVSVGILGQDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ QK + N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLDLLAVAKKGIADIVSAQKASLEN 238 >gi|107104436|ref|ZP_01368354.1| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2] Length = 239 Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 125/238 (52%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGATVALIDALAVLK--KRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N VMTD+G +EVQG+AE A F D AML LA+ + +L +LQ+ ++ Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPDELNAMLELAQQGMQELFELQRAALA 238 >gi|260774477|ref|ZP_05883391.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14] gi|260610604|gb|EEX35809.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14] Length = 238 Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEETVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GA VA+ D H+ K + + +K HVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTAAISGASVAMADAFAHLV-AKGKLK-ANPMKSHVAAVSVGILGENILCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT+ G ++E+QG+AE FS + A+L A+ I D++ QK ++ Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLASAQKGIVDIVAAQKAALA 237 >gi|58425360|gb|AAW74397.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331] Length = 305 Score = 248 bits (632), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 166/239 (69%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDTH+L TA++E +VP ++R GW+TA Sbjct: 69 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 128 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 129 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 188 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VAL D + + + ++ + L G VAA+S G+ G P++DLDY Sbjct: 189 DGGTRTAAITGAYVALADAVNLL---LKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYP 245 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VM D G +E+QG+AE F +D A+L LA+ + DL LQ+ ++ Sbjct: 246 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQRAALA 304 >gi|149189226|ref|ZP_01867513.1| ribonuclease PH [Vibrio shilonii AK1] gi|148836980|gb|EDL53930.1| ribonuclease PH [Vibrio shilonii AK1] Length = 238 Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 120/235 (51%), Positives = 164/235 (69%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREASSGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D H+ K + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFAHLV-AKGKLK-ANPMKGHVAAVSVGILGEDILCDLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N VMT+ G ++E+QG+AE F+ A+L A IA+++ QK Sbjct: 179 EDSAADTDMNVVMTEDGRMIEIQGTAEGEPFTHKELMALLESANKGIAEIVAAQK 233 >gi|300714644|ref|YP_003739447.1| ribonuclease PH [Erwinia billingiae Eb661] gi|299060480|emb|CAX57587.1| Ribonuclease PH [Erwinia billingiae Eb661] Length = 238 Score = 247 bits (631), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPAGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAALDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L H+ K + + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNHLVSI-GKLK-TNPMKGMVAAISVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS D +L LA+ I LI QK + + Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLQLLALARGGIDSLILAQKAALKD 238 >gi|84622697|ref|YP_450069.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899009|ref|YP_199782.2| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331] gi|188578263|ref|YP_001915192.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A] gi|123522908|sp|Q2P6N2|RNPH_XANOM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736951|sp|B2SLL1|RNPH_XANOP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|84366637|dbj|BAE67795.1| Ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522715|gb|ACD60660.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A] Length = 241 Score = 247 bits (631), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 166/239 (69%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDTH+L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VAL D + + + ++ + L G VAA+S G+ G P++DLDY Sbjct: 125 DGGTRTAAITGAYVALADAVNLL---LKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYP 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VM D G +E+QG+AE F +D A+L LA+ + DL LQ+ ++ Sbjct: 182 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQRAALA 240 >gi|219871463|ref|YP_002475838.1| ribonuclease PH [Haemophilus parasuis SH0165] gi|254808589|sp|B8F6D8|RNPH_HAEPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|219691667|gb|ACL32890.1| ribonuclease PH [Haemophilus parasuis SH0165] Length = 244 Score = 247 bits (631), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALHDAINKL--IADGLLKENPMKGLVAAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA+ I L + Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQALN 237 >gi|88705452|ref|ZP_01103163.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71] gi|88700542|gb|EAQ97650.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71] Length = 269 Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 125/239 (52%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R+IS+ R+ + +AEGS LV FG+T ++ TA++E+ VP ++R GWITA Sbjct: 32 RPSGRAPDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITA 91 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+QEIQR+IGR+LR+ VDLS LG I +DCDVIQA Sbjct: 92 EYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQA 151 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ +K + L+ VA++S G+ G ++DLDY E Sbjct: 152 DGGTRTASITGAFVALVDAINGLQ--RDKKISTDPLRHFVASVSVGVYQGEAVLDLDYPE 209 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM + G +EVQG+AE A FS+ ML+LA IA LI Q+ ++ Sbjct: 210 DSKADTDLNVVMAEGGEFIEVQGTAEAAPFSRTDLDKMLDLASGGIATLIDCQRAALAT 268 >gi|167854865|ref|ZP_02477642.1| ribonuclease PH [Haemophilus parasuis 29755] gi|167854044|gb|EDS25281.1| ribonuclease PH [Haemophilus parasuis 29755] Length = 244 Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALHDAINKL--IADGLLKENPMKGLVAAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA+ I L + Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQALN 237 >gi|289625446|ref|ZP_06458400.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646372|ref|ZP_06477715.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 2250] gi|298484821|ref|ZP_07002921.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160675|gb|EFI01696.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866527|gb|EGH01236.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 240 Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ I +L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGITELFELQRAALAD 240 >gi|161611344|ref|YP_272506.2| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322255|gb|EFW78351.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. B076] gi|320331904|gb|EFW87842.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4] gi|330873180|gb|EGH07329.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4] Length = 240 Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240 >gi|329896532|ref|ZP_08271590.1| Ribonuclease PH [gamma proteobacterium IMCC3088] gi|328921749|gb|EGG29122.1| Ribonuclease PH [gamma proteobacterium IMCC3088] Length = 240 Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 125/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +++REI+++R + +AEGS LV+FG T +L A++ E VP ++R + GWITA Sbjct: 3 RPSGRQPHELREITISRNYTCHAEGSVLVEFGRTKVLCNASVSEGVPRFLRGSGQGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+VVDL LG I +DCDVIQA Sbjct: 63 EYGMLPRSTGSRMDREAARGKQGGRTLEIQRLIGRSLRAVVDLKRLGEYTITVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ +K + L VA++S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGACVALVDALNGLQ--RDKALKTDPLNQLVASVSVGVYQGVPVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS+ D D N VM + G ++EVQG+AE ATF + ML+LA+ I DL + Q+ ++ Sbjct: 181 DSSADTDMNVVMGEDGGLIEVQGTAEGATFDRATLNQMLDLAEAGIRDLFEAQRKALA 238 >gi|254428098|ref|ZP_05041805.1| ribonuclease PH [Alcanivorax sp. DG881] gi|196194267|gb|EDX89226.1| ribonuclease PH [Alcanivorax sp. DG881] Length = 238 Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 124/235 (52%), Positives = 161/235 (68%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+RE+S TR + +AEGS LV FG T +L TA++EE VP +++ GW+T Sbjct: 1 MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGGTKVLCTASVEEGVPRFLKGKGQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R REA G+QGGR+ EIQR+IGR+LR+ VD+ ALG R I +DCDV+Q Sbjct: 61 AEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D H+ K S L G V A+S GM G P++DLDY Sbjct: 121 ADGGTRTASISGACVALVDAFTHL--LETKKIKSDPLTGLVGAVSVGMYEGAPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D N VMT G +E+QGSAE A F+++ ++L LA+ I ++IK Q+ Sbjct: 179 EDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDSLLGLAEKGIGEIIKAQQ 233 >gi|30248295|ref|NP_840365.1| 3' exoribonuclease [Nitrosomonas europaea ATCC 19718] gi|61216039|sp|Q82XJ4|RNPH_NITEU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|30138181|emb|CAD84187.1| 3' exoribonuclease family [Nitrosomonas europaea ATCC 19718] Length = 241 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 118/239 (49%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R + R QMR + + R ++AEGS L+++G+T ++ TA++ EKVP +++ GW+TA Sbjct: 3 RCNNRAPAQMRPVRIIRHYVRHAEGSVLIEYGETRVICTASVIEKVPPFLKGAGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R++REA G+Q GR+ EIQR+IGRALRS++DL LG R I +DCDVIQA Sbjct: 63 EYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSILDLEKLGERTIQMDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL+D + ++ + + ++ HVAA+S G+L G P++DLDY E Sbjct: 123 DGGTRTASITGAFVALYDAIDYLR--AERMISQNPIRDHVAAVSVGILKGQPLLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VMT S +VEVQG+AE+ FS+ MLN+A+ + +L +Q+ + Sbjct: 181 DSGCDTDLNVVMTGSLGLVEVQGTAEKVVFSRQELDVMLNMAQQGLQELFDVQRKALET 239 >gi|157963655|ref|YP_001503689.1| ribonuclease PH [Shewanella pealeana ATCC 700345] gi|189043776|sp|A8H9B7|RNPH_SHEPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157848655|gb|ABV89154.1| ribonuclease PH [Shewanella pealeana ATCC 700345] Length = 237 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T Sbjct: 1 MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+QEIQR+IGR+LR+ VD+ LG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + ++L+LAK I +++ +QK +S Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDIQKASLS 237 >gi|241762326|ref|ZP_04760406.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373120|gb|EER62759.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 234 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 5/239 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R +S+ +++AEGSCL+ FGDT +L TA+LEE++P W+R GW+T Sbjct: 1 MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR+ +DL LG RQI IDCDV+Q Sbjct: 61 AEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G WVAL + + S + ++ VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGGWVALRLAVNKLL-ASGQLTEDPIIS-QVAAVSCGISQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST + DANFVM ++EVQ SAE A + ++ +L LA+ + QK ++ Sbjct: 179 EDSTAEADANFVMMGDSRLIEVQASAEGAPYDEE---GLLRLARMGCQQIFAEQKKAVA 234 >gi|330812597|ref|YP_004357059.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380705|gb|AEA72055.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 240 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LAK + ++ +LQK +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240 >gi|121587563|ref|ZP_01677329.1| ribonuclease PH [Vibrio cholerae 2740-80] gi|121548201|gb|EAX58271.1| ribonuclease PH [Vibrio cholerae 2740-80] Length = 229 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 122/231 (52%), Positives = 162/231 (70%), Gaps = 4/231 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D H+ K QL + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD+ Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADM 228 >gi|226311377|ref|YP_002771271.1| ribonuclease PH [Brevibacillus brevis NBRC 100599] gi|254808581|sp|C0ZAF8|RNPH_BREBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226094325|dbj|BAH42767.1| ribonuclease PH [Brevibacillus brevis NBRC 100599] Length = 253 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR +Q+R +++TR K+AEGSCL++ GDT ++ TATLEE+VP ++R GWIT Sbjct: 1 MRVDGRAHDQLRPVTITRNYIKHAEGSCLIEVGDTKVICTATLEERVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GGR+ EIQR+IGRALRSVV+L A+G R I +DCDVIQ Sbjct: 61 AEYSMLPRATATRNARESSKGKVGGRTMEIQRLIGRALRSVVNLEAMGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ D +Q + D QL L +AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAFVAMVDAMQKLVDSGTWKQLP--LNDFLAATSVGVVGEEAVLDLNYK 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST VD N VMT G VE+QG+ E A FS + M++LAK I +LI QK+ +++ Sbjct: 179 EDSTAIVDMNVVMTGKGKFVELQGTGEDAPFSPEQLQEMISLAKVGIDNLIHSQKEALAD 238 >gi|330964252|gb|EGH64512.1| ribonuclease PH [Pseudomonas syringae pv. actinidiae str. M302091] Length = 240 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADALKVLKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240 >gi|254515846|ref|ZP_05127906.1| ribonuclease PH [gamma proteobacterium NOR5-3] gi|219675568|gb|EED31934.1| ribonuclease PH [gamma proteobacterium NOR5-3] Length = 240 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 124/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R+IS+ R+ + +AEGS LV FG+T ++ TA++E+ VP ++R GWITA Sbjct: 3 RPSGRATDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+QEIQR+IGR+LR+ VDLS LG I +DCDVIQA Sbjct: 63 EYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ +K + L+ VA++S G+ G ++DLDY E Sbjct: 123 DGGTRTASITGAFVALVDAINGLQ--RDKKISTDPLRHFVASVSVGVYQGEAVLDLDYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM + G +EVQG+AE A FS+ ML+LA I+ LI+ Q+ ++ Sbjct: 181 DSKADTDLNVVMAEHGEFIEVQGTAEAAPFSRTELDQMLDLASGGISTLIECQRQALA 238 >gi|149927822|ref|ZP_01916073.1| ribonuclease PH [Limnobacter sp. MED105] gi|149823444|gb|EDM82675.1| ribonuclease PH [Limnobacter sp. MED105] Length = 243 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 123/234 (52%), Positives = 165/234 (70%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +R ISL R +K+AEGS +V+FGDTH+L T ++E+KVP +++ GW+TA Sbjct: 7 RPDGRNPRALRNISLERNYTKHAEGSVMVRFGDTHVLCTCSVEDKVPGFLKGKNQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VDL+ LG R + IDCDVIQA Sbjct: 67 EYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLNKLGERTLKIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VA+ D + + +N +K VAA+S G++ G ++DL+Y E Sbjct: 127 DGGTRTASITGAMVAVADAIGKL--IANGALPENPIKQFVAAVSVGVVNGQVVLDLNYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DST + D N VMT+ G VEVQG+AE FS++ ML+ A I +L++LQK Sbjct: 185 DSTCETDLNVVMTEKGGFVEVQGTAEGDAFSREELNGMLDSAAAGIIELVRLQK 238 >gi|146309400|ref|YP_001189865.1| ribonuclease PH [Pseudomonas mendocina ymp] gi|166228302|sp|A4Y0L7|RNPH_PSEMY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145577601|gb|ABP87133.1| RNAse PH [Pseudomonas mendocina ymp] Length = 239 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 120/234 (51%), Positives = 167/234 (71%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + + LK +AA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALIDALKVLKKRGS--LKGEPLKQMIAAVSVGIYQGEPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS + D N VMT++G +EVQG+AE A F + F AML LA+ + ++ +LQK Sbjct: 181 DSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPEEFNAMLALAQKGMNEIFELQK 234 >gi|296284093|ref|ZP_06862091.1| ribonuclease PH [Citromicrobium bathyomarinum JL354] Length = 237 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 118/211 (55%), Positives = 151/211 (71%), Gaps = 2/211 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR IS+ +K+AEGSCL+ FGDT +L TA++E VP W+R GW+T Sbjct: 1 MRPSGRAPDQMRAISIETGFTKHAEGSCLISFGDTRVLCTASVENSVPPWMRGKGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI +DCDVIQ Sbjct: 61 GEYSMLPRATHTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDMKKLGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GAWVAL + ++ + L + G +AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAISGAWVALRLAIDGLK--KSGAILEDPITGKIAAISCGVYKGTPVLDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATF 211 EDS+ D DANFV+ + G I EVQ +AE A + Sbjct: 179 EDSSADADANFVLIEGGKIAEVQATAEGAAY 209 >gi|103485749|ref|YP_615310.1| ribonuclease PH [Sphingopyxis alaskensis RB2256] gi|123380170|sp|Q1GWJ5|RNPH_SPHAL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|98975826|gb|ABF51977.1| RNAse PH [Sphingopyxis alaskensis RB2256] Length = 238 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 121/215 (56%), Positives = 157/215 (73%), Gaps = 4/215 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR I++ + +AEGS LV FG+T +L TA++EEKVP ++R GW+T Sbjct: 1 MRPSGRAADQMRPIAIETNFTIHAEGSVLVSFGNTRVLVTASVEEKVPPFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMQKLGERQIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+I+GAWVAL + + + QL++ + VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGAWVALRLAVDKLIEAK---QLTEDPIVDSVAAISCGIYKGTPVLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 EDS + D NFV+T G IVEVQ SAE AT+ ++ Sbjct: 178 DEDSVAEADGNFVLTGKGQIVEVQASAEGATYDEE 212 >gi|118594148|ref|ZP_01551495.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181] gi|118439926|gb|EAV46553.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181] Length = 240 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/238 (49%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R I R +K+AEGS LVK GDTH++ A++EE VP +++ GW+T Sbjct: 1 MRASNRNADELRPIEFIRSYTKHAEGSVLVKCGDTHVICNASIEENVPSFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ RE+ G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRSTSSRMGRESSRGKQSGRTQEIQRLIGRSLRAIIDLKKLGERTIFIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G++VALHD ++ + SNK + +AAIS G+ ++DLDY Sbjct: 121 ADGGTRTASISGSYVALHDAIEFL--LSNKKITESPIIDSIAAISAGIKGADILLDLDYS 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D NFVMT G VE+QG+AE F++D + N+A I +I +Q + + Sbjct: 179 EDSECDTDMNFVMTGKGSFVEIQGTAEGIPFTKDEMDQLTNVASKGIQSIINIQSEAL 236 >gi|297618203|ref|YP_003703362.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680] gi|297146040|gb|ADI02797.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680] Length = 241 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR ++ R I++ +K+A GS L++ GDT ++ TA++E+KVP +++ T GW+TA Sbjct: 3 RTSGRAFDEPRPINIITGYTKFAPGSVLIETGDTRVICTASVEDKVPPFLKGTGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE GR GR+ EIQR+IGRALR+VVD+SALG R + IDCDVIQA Sbjct: 63 EYSMLPGSTPTRTAREVTRGRVSGRTSEIQRLIGRALRAVVDMSALGERTVWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL+ +Q +++ +L + +VAA S G++ G P++DL+YGE Sbjct: 123 DGGTRTASITGAFVALYLAMQKLKESGIIERLP--VTDYVAATSVGIVRGIPLLDLEYGE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N VMT+SG VE+QG+AE FSQD +L LAK I+ LI QK V+ E Sbjct: 181 DSEAEVDMNVVMTESGKFVEIQGTAENNPFSQDELDELLRLAKKGISILIAKQKAVLGAE 240 >gi|84386442|ref|ZP_00989470.1| ribonuclease PH [Vibrio splendidus 12B01] gi|84378866|gb|EAP95721.1| ribonuclease PH [Vibrio splendidus 12B01] Length = 238 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/240 (49%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+VVDL +G I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D + + S K + +KGHVAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAINSLL-ASGKLK-KNPMKGHVAAVSVGIVGAQALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L LA I D+++ QK +++ Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGITDIVEAQKAALAD 238 >gi|297544117|ref|YP_003676419.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841892|gb|ADH60408.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 259 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/237 (50%), Positives = 169/237 (71%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG+++AL D L + + + ++ LKG VAA+S G++ G ++DL + E Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKIP--LKGFVAAVSVGIVDGNKLLDLSFQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+ Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEVL 237 >gi|66043483|ref|YP_233324.1| ribonuclease PH [Pseudomonas syringae pv. syringae B728a] gi|257481756|ref|ZP_05635797.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302189241|ref|ZP_07265914.1| ribonuclease PH [Pseudomonas syringae pv. syringae 642] gi|75503908|sp|Q4ZZY6|RNPH_PSEU2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|63254190|gb|AAY35286.1| Ribonuclease PH [Pseudomonas syringae pv. syringae B728a] gi|330876506|gb|EGH10655.1| ribonuclease PH [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330890924|gb|EGH23585.1| ribonuclease PH [Pseudomonas syringae pv. mori str. 301020] gi|330895695|gb|EGH27987.1| ribonuclease PH [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941124|gb|EGH44004.1| ribonuclease PH [Pseudomonas syringae pv. pisi str. 1704B] gi|330957289|gb|EGH57549.1| ribonuclease PH [Pseudomonas syringae pv. maculicola str. ES4326] gi|330972206|gb|EGH72272.1| ribonuclease PH [Pseudomonas syringae pv. aceris str. M302273PT] gi|330977343|gb|EGH77296.1| ribonuclease PH [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330986869|gb|EGH84972.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009390|gb|EGH89446.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 240 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240 >gi|152984751|ref|YP_001351426.1| ribonuclease PH [Pseudomonas aeruginosa PA7] gi|166228301|sp|A6VEE1|RNPH_PSEA7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|150959909|gb|ABR81934.1| ribonuclease PH [Pseudomonas aeruginosa PA7] Length = 239 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 125/238 (52%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGATVALIDALAVLK--KRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N VMTDSG +EVQG+AE A F AML LA+ + +L +LQ+ ++ Sbjct: 181 DSAAETDLNVVMTDSGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238 >gi|77461768|ref|YP_351275.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1] gi|123602792|sp|Q3K4M0|RNPH_PSEPF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|77385771|gb|ABA77284.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1] Length = 240 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDLTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK + A+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDALKVIKK-RGGLKGGDPLKQMIGAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LAK + ++ +LQK +++ Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240 >gi|307294011|ref|ZP_07573855.1| ribonuclease PH [Sphingobium chlorophenolicum L-1] gi|306880162|gb|EFN11379.1| ribonuclease PH [Sphingobium chlorophenolicum L-1] Length = 238 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/211 (55%), Positives = 154/211 (72%), Gaps = 2/211 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMREI++ + +AEGSCL+ FGDT +L TA++EEKVP ++R GW+T Sbjct: 1 MRPSGRAPDQMREITMEPGFTIHAEGSCLISFGDTRVLCTASIEEKVPPFLRGKGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI++DCDVIQ Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+G+WVAL + + S + +++ VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAISGSWVALRIAVDKLL-ASGALKEDPIVQ-KVAAISCGIYKGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATF 211 EDS + DAN ++T G EVQ +AE AT+ Sbjct: 179 EDSNAEADANLILTGDGKFAEVQATAEGATY 209 >gi|308047849|ref|YP_003911415.1| ribonuclease PH [Ferrimonas balearica DSM 9799] gi|307630039|gb|ADN74341.1| ribonuclease PH [Ferrimonas balearica DSM 9799] Length = 238 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +Q+R +S+TR + +AEGS LV FG+T ++ TA++EE VP ++R GWIT Sbjct: 1 MRSNGRAADQVRPVSITRNFTAHAEGSVLVAFGNTKVICTASVEESVPRFLRGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+ EIQR+IGR+LR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRATHSRNDREAARGKQSGRTMEIQRLIGRSLRAAVDLEALGEVTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + H++ ++S LK +AAIS G++ + + DLDY Sbjct: 121 ADGGTRTAAITGACVALMDAIDHLK-AKGVLKVSP-LKQQIAAISVGVVGEHAVCDLDYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + D N VM + G I+EVQG+AE F+ + M+ LAK I LI QK +N Sbjct: 179 EDSSAETDMNVVMAEDGRIIEVQGTAEGEPFTYEQMLEMMALAKTGIEQLIAAQKAAYNN 238 >gi|30065081|ref|NP_839252.1| ribonuclease PH [Shigella flexneri 2a str. 2457T] gi|56480393|ref|NP_709422.2| ribonuclease PH [Shigella flexneri 2a str. 301] gi|110807680|ref|YP_691200.1| ribonuclease PH [Shigella flexneri 5 str. 8401] gi|157163124|ref|YP_001460442.1| ribonuclease PH [Escherichia coli HS] gi|170018127|ref|YP_001723081.1| ribonuclease PH [Escherichia coli ATCC 8739] gi|194435850|ref|ZP_03067953.1| ribonuclease PH [Escherichia coli 101-1] gi|253771516|ref|YP_003034347.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163571|ref|YP_003046679.1| ribonuclease PH [Escherichia coli B str. REL606] gi|260857962|ref|YP_003231853.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368] gi|260870373|ref|YP_003236775.1| ribonuclease PH [Escherichia coli O111:H- str. 11128] gi|297518127|ref|ZP_06936513.1| ribonuclease PH [Escherichia coli OP50] gi|300907685|ref|ZP_07125313.1| ribonuclease PH [Escherichia coli MS 84-1] gi|300923429|ref|ZP_07139469.1| ribonuclease PH [Escherichia coli MS 182-1] gi|300927927|ref|ZP_07143486.1| ribonuclease PH [Escherichia coli MS 187-1] gi|301303877|ref|ZP_07209996.1| ribonuclease PH [Escherichia coli MS 124-1] gi|301325325|ref|ZP_07218832.1| ribonuclease PH [Escherichia coli MS 78-1] gi|312972072|ref|ZP_07786246.1| ribonuclease PH [Escherichia coli 1827-70] gi|61216048|sp|Q83PN2|RNPH_SHIFL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123047760|sp|Q0SYH0|RNPH_SHIF8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166991084|sp|A8A6A5|RNPH_ECOHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043762|sp|B1IYV7|RNPH_ECOLC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|30043342|gb|AAP19063.1| RNase PH [Shigella flexneri 2a str. 2457T] gi|56383944|gb|AAN45129.2| RNase PH [Shigella flexneri 2a str. 301] gi|110617228|gb|ABF05895.1| RNase PH [Shigella flexneri 5 str. 8401] gi|157068804|gb|ABV08059.1| ribonuclease PH [Escherichia coli HS] gi|169753055|gb|ACA75754.1| ribonuclease PH [Escherichia coli ATCC 8739] gi|194425393|gb|EDX41377.1| ribonuclease PH [Escherichia coli 101-1] gi|253322560|gb|ACT27162.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975472|gb|ACT41143.1| ribonuclease PH [Escherichia coli B str. REL606] gi|253979628|gb|ACT45298.1| ribonuclease PH [Escherichia coli BL21(DE3)] gi|257756611|dbj|BAI28113.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368] gi|257766729|dbj|BAI38224.1| ribonuclease PH [Escherichia coli O111:H- str. 11128] gi|281603006|gb|ADA75990.1| Ribonuclease PH [Shigella flexneri 2002017] gi|300400621|gb|EFJ84159.1| ribonuclease PH [Escherichia coli MS 84-1] gi|300420256|gb|EFK03567.1| ribonuclease PH [Escherichia coli MS 182-1] gi|300464019|gb|EFK27512.1| ribonuclease PH [Escherichia coli MS 187-1] gi|300840840|gb|EFK68600.1| ribonuclease PH [Escherichia coli MS 124-1] gi|300847852|gb|EFK75612.1| ribonuclease PH [Escherichia coli MS 78-1] gi|309704045|emb|CBJ03391.1| ribonuclease PH [Escherichia coli ETEC H10407] gi|310334449|gb|EFQ00654.1| ribonuclease PH [Escherichia coli 1827-70] gi|313647483|gb|EFS11933.1| ribonuclease PH [Shigella flexneri 2a str. 2457T] gi|313848787|emb|CAQ33969.2| rph [Escherichia coli BL21(DE3)] gi|315254030|gb|EFU33998.1| ribonuclease PH [Escherichia coli MS 85-1] gi|320201331|gb|EFW75912.1| Ribonuclease PH [Escherichia coli EC4100B] gi|323155294|gb|EFZ41477.1| ribonuclease PH [Escherichia coli EPECa14] gi|323173236|gb|EFZ58865.1| ribonuclease PH [Escherichia coli LT-68] gi|323179387|gb|EFZ64954.1| ribonuclease PH [Escherichia coli 1180] gi|323944096|gb|EGB40176.1| ribonuclease PH [Escherichia coli H120] gi|323959891|gb|EGB55539.1| ribonuclease PH [Escherichia coli H489] gi|323971285|gb|EGB66530.1| ribonuclease PH [Escherichia coli TA007] gi|332750601|gb|EGJ81009.1| ribonuclease PH [Shigella flexneri 4343-70] gi|332751354|gb|EGJ81757.1| ribonuclease PH [Shigella flexneri 2747-71] gi|332764155|gb|EGJ94392.1| ribonuclease PH [Shigella flexneri 2930-71] gi|332996132|gb|EGK15759.1| ribonuclease PH [Shigella flexneri VA-6] gi|332997420|gb|EGK17036.1| ribonuclease PH [Shigella flexneri K-218] gi|332997778|gb|EGK17389.1| ribonuclease PH [Shigella flexneri K-272] gi|333012908|gb|EGK32285.1| ribonuclease PH [Shigella flexneri K-304] gi|333013313|gb|EGK32685.1| ribonuclease PH [Shigella flexneri K-227] Length = 238 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 127/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|152998356|ref|YP_001343191.1| ribonuclease PH [Marinomonas sp. MWYL1] gi|189043766|sp|A6W3H7|RNPH_MARMS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|150839280|gb|ABR73256.1| ribonuclease PH [Marinomonas sp. MWYL1] Length = 239 Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 163/235 (69%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +Q+R + +TR +K+AEGS L++ GDT ++ TAT+ VP +++ GWIT Sbjct: 1 MRPSGREADQLRPLKITRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL D ++ + NK + +AAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASITGGFVALADAMRVL--VENKKVKENPIVSQIAAISVGVYKGVPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D N +M D G +E+QG+AE FS +H ML +A+ IA++++ Q+ Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLAVARKGIAEIMEAQR 233 >gi|237797786|ref|ZP_04586247.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020636|gb|EGI00693.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6] Length = 240 Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT G +E+QG+AE A F + AML LAK + +L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSEGGFIEIQGTAEGAPFQPEELNAMLALAKKGMNELFELQRAALAD 240 >gi|71553993|gb|AAZ33204.1| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A] Length = 294 Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 57 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 116 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 117 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 176 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 177 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPE 235 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++ Sbjct: 236 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 294 >gi|294142837|ref|YP_003558815.1| ribonuclease PH [Shewanella violacea DSS12] gi|293329306|dbj|BAJ04037.1| ribonuclease PH [Shewanella violacea DSS12] Length = 237 Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FG+T +L TA+ EE VP +++ GW+T Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFEEGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++E+QG+AE FS + +ML LAK I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQKAALN 237 >gi|192362066|ref|YP_001980727.1| ribonuclease PH [Cellvibrio japonicus Ueda107] gi|226736897|sp|B3PGE8|RNPH_CELJU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|190688231|gb|ACE85909.1| ribonuclease PH [Cellvibrio japonicus Ueda107] Length = 239 Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 120/226 (53%), Positives = 160/226 (70%), Gaps = 2/226 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +R I +TRR +K+AEGS L++FGDT ++ TA++ VP ++R GW+TA Sbjct: 3 RPSGRNPQALRPIRITRRYTKHAEGSVLIEFGDTKVICTASVVAGVPSFLRGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R+ REA G+Q GR+ EIQR+IGR+LR+ +DL+ALG I +DCDVIQA Sbjct: 63 EYGMLPRSTGTRMDREAARGKQQGRTVEIQRLIGRSLRAAIDLNALGENTIHLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVAL D + ++ + + LK +A++S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGAWVALADAVAWLK--AEGRVTDEPLKRAIASVSVGIYQGVPVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 DS D D N VM D G I+E+QG+AE F++ F AML+LAK I Sbjct: 181 DSAADTDMNVVMGDDGGIIEIQGTAEAEPFTEAEFAAMLSLAKQGI 226 >gi|127514416|ref|YP_001095613.1| ribonuclease PH [Shewanella loihica PV-4] gi|166228318|sp|A3QIQ6|RNPH_SHELP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|126639711|gb|ABO25354.1| RNAse PH [Shewanella loihica PV-4] Length = 237 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS L++FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLIEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGLIKTNPLKFLIAAVSVGIYKGEPICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + ++L+LAK I +++ +QK +S Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDVQKAALS 237 >gi|197123834|ref|YP_002135785.1| ribonuclease PH [Anaeromyxobacter sp. K] gi|220918599|ref|YP_002493903.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1] gi|226736882|sp|B4UBI2|RNPH_ANASK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808575|sp|B8J5H5|RNPH_ANAD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|196173683|gb|ACG74656.1| ribonuclease PH [Anaeromyxobacter sp. K] gi|219956453|gb|ACL66837.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1] Length = 239 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 129/236 (54%), Positives = 168/236 (71%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR E +R I L RVSK+AEGSCLV+FGDTH+L TA+++EKVP + T GW+T Sbjct: 1 MRKNGRGELDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA G+Q GR+ EIQR++GRALR+ VDL A+G R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTAAITGA+VAL +Q + + QL+Q +K VAA+S G++ G +DLDY Sbjct: 121 ADGGTRTAAITGAYVAL---VQAVRGIQKRRQLAQDPVKRSVAAVSVGIVAGQVHLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST +VD N V T G +VEVQG+AE F + ML+ A ++ L +LQ+ Sbjct: 178 DEDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRAELDRMLDAALAGLSRLKELQE 233 >gi|56550910|ref|YP_161749.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4] gi|260753398|ref|YP_003226291.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|61215796|sp|Q5NRL6|RNPH_ZYMMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56542484|gb|AAV88638.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4] gi|258552761|gb|ACV75707.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 237 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R +S+ +++AEGSCL+ FGDT +L TA+LEE++P W+R GW+T Sbjct: 1 MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR+ +DL LG RQI IDCDV+Q Sbjct: 61 AEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G WVAL + + S + ++ VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGGWVALRLAVNKLL-ASGQLTEDPIIS-QVAAVSCGISQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST + DANFVM ++EVQ SAE A + ++ +L LA+ + QK ++ Sbjct: 179 EDSTAEADANFVMMGDSRLIEVQASAEGAPYDEEGLLRLLRLARMGCQQIFAEQKKAVA 237 >gi|218556206|ref|YP_002389119.1| ribonuclease PH [Escherichia coli IAI1] gi|218697364|ref|YP_002405031.1| ribonuclease PH [Escherichia coli 55989] gi|254038843|ref|ZP_04872895.1| ribonuclease PH [Escherichia sp. 1_1_43] gi|218354096|emb|CAV00651.1| ribonuclease PH [Escherichia coli 55989] gi|218362974|emb|CAR00611.1| ribonuclease PH [Escherichia coli IAI1] gi|226838808|gb|EEH70835.1| ribonuclease PH [Escherichia sp. 1_1_43] Length = 246 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 127/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 9 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 69 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + N + +KG VAA+S G++ G I DL+Y Sbjct: 129 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 187 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 246 >gi|254439955|ref|ZP_05053449.1| ribonuclease PH [Octadecabacter antarcticus 307] gi|198255401|gb|EDY79715.1| ribonuclease PH [Octadecabacter antarcticus 307] Length = 235 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 125/234 (53%), Positives = 172/234 (73%), Gaps = 4/234 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + MR IS+ V+++AEGSCL+K GDT +L TA+++E+VP +++N+ GW+T Sbjct: 1 MRPSGRTIDGMRPISIEIDVTRHAEGSCLIKCGDTQVLCTASIDERVPSFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G Q GR+QEIQR+IGR+LR+ +D ALG RQI+IDCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGIDRVALGERQIVIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + + +S L VAA+SCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMNAGDV--ISDPLLIPVAAVSCGIYAGQSVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS VD NFVMT + ++E+Q SAE +TF++D AM++LA IA+L +Q Sbjct: 178 EDSEAGVDGNFVMT-ADKLIEIQMSAEGSTFTRDQMNAMMDLAHKGIAELTAVQ 230 >gi|28867317|ref|NP_789936.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000] gi|61216049|sp|Q88BE0|RNPH_PSESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|28850551|gb|AAO53631.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000] gi|331018562|gb|EGH98618.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 240 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 167/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L ++Q+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 240 >gi|312795401|ref|YP_004028323.1| ribonuclease PH [Burkholderia rhizoxinica HKI 454] gi|312167176|emb|CBW74179.1| Ribonuclease PH (EC 2.7.7.56) [Burkholderia rhizoxinica HKI 454] Length = 243 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 124/237 (52%), Positives = 165/237 (69%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R++ +TR +K+AEGS L++ GDT ++ TA++ EKVP ++R+ GW+TA Sbjct: 7 RPSGRAADALRDVCITRHYTKHAEGSVLIECGDTKVICTASVLEKVPEFLRDRGRGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL LG R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRALRAVFDLEKLGPRTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGA++A HD + + K + +L HVAA+S G+ P++DLDY E Sbjct: 127 DGGTRCASITGAFIAAHDAVDTLL-AHGKLTATPILD-HVAAVSVGIHGATPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+D A+L LA+ I LI+LQK + Sbjct: 185 DSHCDTDMNVVMTGAGRFVEVQGTAEGEPFSRDELNALLGLAESGITRLIELQKKAL 241 >gi|83595868|gb|ABC25230.1| ribonuclease PH [uncultured marine bacterium Ant4D3] Length = 256 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 166/239 (69%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R+I +TR +K+AEGS L++FGDT +L TAT+E VP ++R + GW+TA Sbjct: 18 RPSGRATDQLRDIKITRGFTKHAEGSVLIEFGDTRVLCTATVERGVPRFLRGSGSGWVTA 77 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R REA G+QGGR+ EIQR+IGR+LR+ ++L LG I +DCDV+QA Sbjct: 78 EYGMLPRATHSRNGREAARGKQGGRTLEIQRLIGRSLRASLNLEKLGENTITLDCDVLQA 137 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA++A+ D + ++ N L+ +AAIS G+ P++DLDY E Sbjct: 138 DGGTRTASITGAYIAMVDAINVLKKDKNGAMRGDPLRRQIAAISVGIYKDEPVLDLDYDE 197 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT G +EVQG+AE + ++QD AML LA+ I ++ LQ +++ Sbjct: 198 DSKAETDMNVVMTADGGFIEVQGTAEGSPYTQDQMMAMLALARKGITEIAALQTAALAD 256 >gi|15804184|ref|NP_290223.1| ribonuclease PH [Escherichia coli O157:H7 EDL933] gi|15833772|ref|NP_312545.1| ribonuclease PH [Escherichia coli O157:H7 str. Sakai] gi|74314123|ref|YP_312542.1| ribonuclease PH [Shigella sonnei Ss046] gi|82546006|ref|YP_409953.1| ribonuclease PH [Shigella boydii Sb227] gi|117625915|ref|YP_859238.1| ribonuclease PH [Escherichia coli APEC O1] gi|157158506|ref|YP_001465123.1| ribonuclease PH [Escherichia coli E24377A] gi|161486067|ref|NP_756329.2| ribonuclease PH [Escherichia coli CFT073] gi|162138338|ref|YP_543146.2| ribonuclease PH [Escherichia coli UTI89] gi|168748709|ref|ZP_02773731.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113] gi|168753467|ref|ZP_02778474.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401] gi|168759740|ref|ZP_02784747.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501] gi|168766063|ref|ZP_02791070.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486] gi|168772391|ref|ZP_02797398.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196] gi|168779798|ref|ZP_02804805.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076] gi|168785519|ref|ZP_02810526.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869] gi|168798588|ref|ZP_02823595.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508] gi|170680501|ref|YP_001745943.1| ribonuclease PH [Escherichia coli SMS-3-5] gi|187733771|ref|YP_001882340.1| ribonuclease PH [Shigella boydii CDC 3083-94] gi|191167816|ref|ZP_03029622.1| ribonuclease PH [Escherichia coli B7A] gi|193063848|ref|ZP_03044935.1| ribonuclease PH [Escherichia coli E22] gi|193070385|ref|ZP_03051327.1| ribonuclease PH [Escherichia coli E110019] gi|194430060|ref|ZP_03062565.1| ribonuclease PH [Escherichia coli B171] gi|194431006|ref|ZP_03063299.1| ribonuclease PH [Shigella dysenteriae 1012] gi|195936204|ref|ZP_03081586.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4024] gi|208807479|ref|ZP_03249816.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206] gi|208812475|ref|ZP_03253804.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045] gi|208819811|ref|ZP_03260131.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042] gi|209399306|ref|YP_002273121.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115] gi|209921114|ref|YP_002295198.1| ribonuclease PH [Escherichia coli SE11] gi|217324320|ref|ZP_03440404.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588] gi|227883811|ref|ZP_04001616.1| ribonuclease PH [Escherichia coli 83972] gi|237703414|ref|ZP_04533895.1| ribonuclease PH [Escherichia sp. 3_2_53FAA] gi|254795598|ref|YP_003080435.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359] gi|256021353|ref|ZP_05435218.1| ribonuclease PH [Shigella sp. D9] gi|256025627|ref|ZP_05439492.1| ribonuclease PH [Escherichia sp. 4_1_40B] gi|260846592|ref|YP_003224370.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009] gi|261224174|ref|ZP_05938455.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK2000] gi|261254784|ref|ZP_05947317.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK966] gi|291285014|ref|YP_003501832.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615] gi|293407266|ref|ZP_06651190.1| rph [Escherichia coli FVEC1412] gi|293413077|ref|ZP_06655745.1| ribonuclease PH [Escherichia coli B354] gi|293417104|ref|ZP_06659731.1| ribonuclease PH [Escherichia coli B185] gi|293463967|ref|ZP_06664381.1| ribonuclease PH [Escherichia coli B088] gi|298383012|ref|ZP_06992607.1| ribonuclease PH [Escherichia coli FVEC1302] gi|300815118|ref|ZP_07095343.1| ribonuclease PH [Escherichia coli MS 107-1] gi|300822413|ref|ZP_07102553.1| ribonuclease PH [Escherichia coli MS 119-7] gi|300898578|ref|ZP_07116908.1| ribonuclease PH [Escherichia coli MS 198-1] gi|300919790|ref|ZP_07136265.1| ribonuclease PH [Escherichia coli MS 115-1] gi|300939243|ref|ZP_07153922.1| ribonuclease PH [Escherichia coli MS 21-1] gi|300948023|ref|ZP_07162164.1| ribonuclease PH [Escherichia coli MS 116-1] gi|300954463|ref|ZP_07166913.1| ribonuclease PH [Escherichia coli MS 175-1] gi|300984904|ref|ZP_07177192.1| ribonuclease PH [Escherichia coli MS 45-1] gi|301018972|ref|ZP_07183195.1| ribonuclease PH [Escherichia coli MS 69-1] gi|301028402|ref|ZP_07191648.1| ribonuclease PH [Escherichia coli MS 196-1] gi|301047433|ref|ZP_07194512.1| ribonuclease PH [Escherichia coli MS 185-1] gi|301644309|ref|ZP_07244311.1| ribonuclease PH [Escherichia coli MS 146-1] gi|307140341|ref|ZP_07499697.1| ribonuclease PH [Escherichia coli H736] gi|307314272|ref|ZP_07593880.1| ribonuclease PH [Escherichia coli W] gi|309797616|ref|ZP_07692004.1| ribonuclease PH [Escherichia coli MS 145-7] gi|331644361|ref|ZP_08345490.1| tRNA nucleotidyltransferase [Escherichia coli H736] gi|331649458|ref|ZP_08350544.1| tRNA nucleotidyltransferase [Escherichia coli M605] gi|331655275|ref|ZP_08356274.1| tRNA nucleotidyltransferase [Escherichia coli M718] gi|331659963|ref|ZP_08360901.1| tRNA nucleotidyltransferase [Escherichia coli TA206] gi|331665268|ref|ZP_08366169.1| tRNA nucleotidyltransferase [Escherichia coli TA143] gi|331670483|ref|ZP_08371322.1| tRNA nucleotidyltransferase [Escherichia coli TA271] gi|331675122|ref|ZP_08375879.1| tRNA nucleotidyltransferase [Escherichia coli TA280] gi|331679734|ref|ZP_08380404.1| tRNA nucleotidyltransferase [Escherichia coli H591] gi|331685306|ref|ZP_08385892.1| tRNA nucleotidyltransferase [Escherichia coli H299] gi|332282587|ref|ZP_08395000.1| ribonuclease PH [Shigella sp. D9] gi|54039263|sp|P66680|RNPH_ECO57 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|54042177|sp|P66679|RNPH_ECOL6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123558299|sp|Q31UY3|RNPH_SHIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123615832|sp|Q3YW05|RNPH_SHISS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228279|sp|A1AHH4|RNPH_ECOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166991083|sp|A7ZTJ4|RNPH_ECO24 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736905|sp|B5YWE1|RNPH_ECO5E RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736906|sp|B6I3M0|RNPH_ECOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736907|sp|B1LK80|RNPH_ECOSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736941|sp|B2TTV7|RNPH_SHIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|12518399|gb|AAG58787.1|AE005591_11 RNase PH [Escherichia coli O157:H7 str. EDL933] gi|13363993|dbj|BAB37941.1| RNase PH [Escherichia coli O157:H7 str. Sakai] gi|73857600|gb|AAZ90307.1| RNase PH [Shigella sonnei Ss046] gi|81247417|gb|ABB68125.1| RNase PH [Shigella boydii Sb227] gi|115515039|gb|ABJ03114.1| ribonuclease PH [Escherichia coli APEC O1] gi|157080536|gb|ABV20244.1| ribonuclease PH [Escherichia coli E24377A] gi|170518219|gb|ACB16397.1| ribonuclease PH [Escherichia coli SMS-3-5] gi|187430763|gb|ACD10037.1| ribonuclease PH [Shigella boydii CDC 3083-94] gi|187771578|gb|EDU35422.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196] gi|188016889|gb|EDU55011.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113] gi|189002636|gb|EDU71622.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076] gi|189359228|gb|EDU77647.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401] gi|189364689|gb|EDU83108.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486] gi|189369513|gb|EDU87929.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501] gi|189374286|gb|EDU92702.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869] gi|189378769|gb|EDU97185.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508] gi|190902159|gb|EDV61902.1| ribonuclease PH [Escherichia coli B7A] gi|192930563|gb|EDV83170.1| ribonuclease PH [Escherichia coli E22] gi|192956324|gb|EDV86785.1| ribonuclease PH [Escherichia coli E110019] gi|194411887|gb|EDX28204.1| ribonuclease PH [Escherichia coli B171] gi|194420461|gb|EDX36537.1| ribonuclease PH [Shigella dysenteriae 1012] gi|208727280|gb|EDZ76881.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206] gi|208733752|gb|EDZ82439.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045] gi|208739934|gb|EDZ87616.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042] gi|209160706|gb|ACI38139.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115] gi|209754598|gb|ACI75606.1| RNase PH [Escherichia coli] gi|209754600|gb|ACI75607.1| RNase PH [Escherichia coli] gi|209754602|gb|ACI75608.1| RNase PH [Escherichia coli] gi|209754604|gb|ACI75609.1| RNase PH [Escherichia coli] gi|209754606|gb|ACI75610.1| RNase PH [Escherichia coli] gi|209914373|dbj|BAG79447.1| ribonuclease PH [Escherichia coli SE11] gi|217320541|gb|EEC28965.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588] gi|222035351|emb|CAP78096.1| ribonuclease PH [Escherichia coli LF82] gi|226902678|gb|EEH88937.1| ribonuclease PH [Escherichia sp. 3_2_53FAA] gi|227839089|gb|EEJ49555.1| ribonuclease PH [Escherichia coli 83972] gi|254594998|gb|ACT74359.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359] gi|257761739|dbj|BAI33236.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009] gi|281180689|dbj|BAI57019.1| ribonuclease PH [Escherichia coli SE15] gi|284923676|emb|CBG36773.1| ribonuclease PH [Escherichia coli 042] gi|290764887|gb|ADD58848.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615] gi|291321599|gb|EFE61035.1| ribonuclease PH [Escherichia coli B088] gi|291426077|gb|EFE99111.1| rph [Escherichia coli FVEC1412] gi|291431135|gb|EFF04128.1| ribonuclease PH [Escherichia coli B185] gi|291468724|gb|EFF11217.1| ribonuclease PH [Escherichia coli B354] gi|294492761|gb|ADE91517.1| ribonuclease PH [Escherichia coli IHE3034] gi|298276848|gb|EFI18366.1| ribonuclease PH [Escherichia coli FVEC1302] gi|299878513|gb|EFI86724.1| ribonuclease PH [Escherichia coli MS 196-1] gi|300300641|gb|EFJ57026.1| ribonuclease PH [Escherichia coli MS 185-1] gi|300318542|gb|EFJ68326.1| ribonuclease PH [Escherichia coli MS 175-1] gi|300357741|gb|EFJ73611.1| ribonuclease PH [Escherichia coli MS 198-1] gi|300399466|gb|EFJ83004.1| ribonuclease PH [Escherichia coli MS 69-1] gi|300408333|gb|EFJ91871.1| ribonuclease PH [Escherichia coli MS 45-1] gi|300413143|gb|EFJ96453.1| ribonuclease PH [Escherichia coli MS 115-1] gi|300452418|gb|EFK16038.1| ribonuclease PH [Escherichia coli MS 116-1] gi|300455842|gb|EFK19335.1| ribonuclease PH [Escherichia coli MS 21-1] gi|300525060|gb|EFK46129.1| ribonuclease PH [Escherichia coli MS 119-7] gi|300532010|gb|EFK53072.1| ribonuclease PH [Escherichia coli MS 107-1] gi|301077347|gb|EFK92153.1| ribonuclease PH [Escherichia coli MS 146-1] gi|306906095|gb|EFN36614.1| ribonuclease PH [Escherichia coli W] gi|307555742|gb|ADN48517.1| ribonuclease PH [Escherichia coli ABU 83972] gi|307628716|gb|ADN73020.1| ribonuclease PH [Escherichia coli UM146] gi|308118803|gb|EFO56065.1| ribonuclease PH [Escherichia coli MS 145-7] gi|312948204|gb|ADR29031.1| ribonuclease PH [Escherichia coli O83:H1 str. NRG 857C] gi|315062931|gb|ADT77258.1| ribonuclease PH [Escherichia coli W] gi|315285457|gb|EFU44902.1| ribonuclease PH [Escherichia coli MS 110-3] gi|315296969|gb|EFU56249.1| ribonuclease PH [Escherichia coli MS 16-3] gi|315618654|gb|EFU99240.1| ribonuclease PH [Escherichia coli 3431] gi|320176298|gb|EFW51358.1| Ribonuclease PH [Shigella dysenteriae CDC 74-1112] gi|320179979|gb|EFW54921.1| Ribonuclease PH [Shigella boydii ATCC 9905] gi|320186817|gb|EFW61537.1| Ribonuclease PH [Shigella flexneri CDC 796-83] gi|320191306|gb|EFW65956.1| Ribonuclease PH [Escherichia coli O157:H7 str. EC1212] gi|320193850|gb|EFW68483.1| Ribonuclease PH [Escherichia coli WV_060327] gi|320639550|gb|EFX09158.1| ribonuclease PH [Escherichia coli O157:H7 str. G5101] gi|320644989|gb|EFX14019.1| ribonuclease PH [Escherichia coli O157:H- str. 493-89] gi|320650256|gb|EFX18745.1| ribonuclease PH [Escherichia coli O157:H- str. H 2687] gi|320661342|gb|EFX28766.1| ribonuclease PH [Escherichia coli O55:H7 str. USDA 5905] gi|320666356|gb|EFX33355.1| ribonuclease PH [Escherichia coli O157:H7 str. LSU-61] gi|323160749|gb|EFZ46685.1| ribonuclease PH [Escherichia coli E128010] gi|323166871|gb|EFZ52610.1| ribonuclease PH [Shigella sonnei 53G] gi|323182671|gb|EFZ68074.1| ribonuclease PH [Escherichia coli 1357] gi|323189449|gb|EFZ74730.1| ribonuclease PH [Escherichia coli RN587/1] gi|323376476|gb|ADX48744.1| ribonuclease PH [Escherichia coli KO11] gi|323934812|gb|EGB31194.1| ribonuclease PH [Escherichia coli E1520] gi|323939598|gb|EGB35804.1| ribonuclease PH [Escherichia coli E482] gi|323949882|gb|EGB45766.1| ribonuclease PH [Escherichia coli H252] gi|323954817|gb|EGB50597.1| ribonuclease PH [Escherichia coli H263] gi|324008099|gb|EGB77318.1| ribonuclease PH [Escherichia coli MS 57-2] gi|324019680|gb|EGB88899.1| ribonuclease PH [Escherichia coli MS 117-3] gi|324111538|gb|EGC05519.1| ribonuclease PH [Escherichia fergusonii B253] gi|324116018|gb|EGC09944.1| ribonuclease PH [Escherichia coli E1167] gi|326337358|gb|EGD61193.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1044] gi|326339883|gb|EGD63690.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1125] gi|330909705|gb|EGH38219.1| ribonuclease PH [Escherichia coli AA86] gi|331036655|gb|EGI08881.1| tRNA nucleotidyltransferase [Escherichia coli H736] gi|331041956|gb|EGI14100.1| tRNA nucleotidyltransferase [Escherichia coli M605] gi|331047290|gb|EGI19368.1| tRNA nucleotidyltransferase [Escherichia coli M718] gi|331053178|gb|EGI25211.1| tRNA nucleotidyltransferase [Escherichia coli TA206] gi|331057778|gb|EGI29764.1| tRNA nucleotidyltransferase [Escherichia coli TA143] gi|331062545|gb|EGI34465.1| tRNA nucleotidyltransferase [Escherichia coli TA271] gi|331068031|gb|EGI39429.1| tRNA nucleotidyltransferase [Escherichia coli TA280] gi|331072906|gb|EGI44231.1| tRNA nucleotidyltransferase [Escherichia coli H591] gi|331077677|gb|EGI48889.1| tRNA nucleotidyltransferase [Escherichia coli H299] gi|332084483|gb|EGI89678.1| ribonuclease PH [Shigella dysenteriae 155-74] gi|332084823|gb|EGI90006.1| ribonuclease PH [Shigella boydii 5216-82] gi|332089330|gb|EGI94434.1| ribonuclease PH [Shigella boydii 3594-74] gi|332104939|gb|EGJ08285.1| ribonuclease PH [Shigella sp. D9] Length = 238 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|134095311|ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans] gi|133739214|emb|CAL62263.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Herminiimonas arsenicoxydans] Length = 244 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R I R +K+AEGS L++ GDT ++ TA++E++VP +++ GW+TA Sbjct: 6 RPSGRAADALRAIKFIRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ DL A G R + +DCDVIQA Sbjct: 66 EYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG VA +D + + + LK VAAIS G+ G P++DLDY E Sbjct: 126 DGGTRTAAITGTMVAAYDAFSKL--VAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMTD+GH +EVQG+AE A F + +L+LA+D I DLI +QK ++ Sbjct: 184 DSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDRLLDLAQDGIRDLIVMQKQALA 241 >gi|134300519|ref|YP_001114015.1| ribonuclease PH [Desulfotomaculum reducens MI-1] gi|172044340|sp|A4J7Y7|RNPH_DESRM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|134053219|gb|ABO51190.1| RNAse PH [Desulfotomaculum reducens MI-1] Length = 245 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 120/241 (49%), Positives = 169/241 (70%), Gaps = 6/241 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR++ Q+R + +T +KYAEGS L++ GDT ++ TAT+EE+VP +++ GW+TA Sbjct: 3 RVDGRKQGQIRPVRMTPNYNKYAEGSVLIEVGDTRVICTATVEERVPPFLKGLGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+TG+R REA G+ GGR+ EIQR+IGRALRSVV+L ALG R + +DCDVIQA Sbjct: 63 EYSMLPRATGSRTIREAARGKLGGRTMEIQRLIGRALRSVVNLEALGERSLTMDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTA+ITGA+VA+ L + + K +S +AA S G++ G P++DL Y Sbjct: 123 DGGTRTASITGAYVAMIFALNRLVEQGMLEKIPVSD----FIAATSVGIVKGRPVIDLCY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT +G VE+QG+ E ATFS++ +L+LA I +L K+Q+ V+ Sbjct: 179 AEDSVAEVDMNVVMTGTGRFVEIQGTGEEATFSREEMNQLLDLAAAGIEELNKVQRQVLG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|323701932|ref|ZP_08113601.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574] gi|323533018|gb|EGB22888.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574] Length = 250 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 117/241 (48%), Positives = 167/241 (69%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R + +T +KYAEGS L++ GDT ++ TAT+E++VP +++ GW+TA Sbjct: 3 RVDGRTPGQIRPVKITANYNKYAEGSVLIEIGDTRVICTATVEDRVPPFLKGLGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+TG R REA G+ GR+ EIQR+IGRALRSVVDL ALG R + +DCDVIQA Sbjct: 63 EYSMIPRATGTRTTREAAKGKLSGRTMEIQRLIGRALRSVVDLEALGERMVTMDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT++ITGA+VA+ L + + ++ + +AA S G++ G P++DL Y E Sbjct: 123 DGGTRTSSITGAYVAMILALNKLVEQGMLEKIP--VNDFIAATSVGIVNGTPVLDLCYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V+T +G VE+QG+ E ATFS+D +L+LA I +LIK+Q+ V+ E Sbjct: 181 DSAAEVDMNVVLTGTGRFVEIQGTGEEATFSRDEMNQLLDLAAAGIKELIKVQQQVLGPE 240 Query: 242 V 242 + Sbjct: 241 I 241 >gi|992693|gb|AAB01514.1| RNase PH [Caulobacter crescentus CB15] Length = 238 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 119/233 (51%), Positives = 164/233 (70%), Gaps = 3/233 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +Q+R ++L V++YA + L+ FG T +L TAT+EE VP W+RN GW+T Sbjct: 1 MRPSERAPDQLRAVTLETGVNRYAR-ALLIGFGHTKVLVTATVEENVPGWMRNKGAGWVT 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q Sbjct: 60 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL +++ D + +L G VAA+SCG+ G P++DLDY Sbjct: 120 ADGGTRTAAITGAWVALRLATKYLLD-EGVLKTDPIL-GQVAAVSCGVFNGVPVLDLDYE 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS + D+NFV+T G IVE+Q + E F++ F ++ ++ + ++L Sbjct: 178 EDSNAEADSNFVLTGVGDIVEIQATGETRGFTRAEFESLYGAGREGVQRTVRL 230 >gi|257454134|ref|ZP_05619407.1| ribonuclease PH [Enhydrobacter aerosaccus SK60] gi|257448462|gb|EEV23432.1| ribonuclease PH [Enhydrobacter aerosaccus SK60] Length = 238 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 121/238 (50%), Positives = 167/238 (70%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ NQ+R +S R +K+AEG+ LV +GDT +L TA++E +VP W++ T GWIT Sbjct: 1 MRIDNRENNQLRPMSFVRNFTKHAEGAVLVSYGDTKVLCTASIETQVPRWLKGTGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDV+Q Sbjct: 61 AEYGMLPRATHERTQREAAKGKQSGRTQEIQRLIGRSLRAMVDLEKLGENTIHIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L+ ++ + K + + L G VAA+S G+ G ++DL+Y Sbjct: 121 ADGGTRTASITGAAVALVDALEKLQ-AAKKLK-ADPLVGLVAAVSVGIKNGEVLLDLNYS 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ D D N VMT G +E+QG+AE F++ ML +A++ I LI Q+ V+ Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAQADEMLAIAEEGIKQLIAEQQAVL 236 >gi|53802880|ref|YP_115411.1| ribonuclease PH [Methylococcus capsulatus str. Bath] gi|61215834|sp|Q602N9|RNPH_METCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|53756641|gb|AAU90932.1| ribonuclease PH [Methylococcus capsulatus str. Bath] Length = 243 Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 121/238 (50%), Positives = 169/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +Q+R I+ T +K+AEGS LV+FGDT ++ TA++EE+VP +++ GWIT Sbjct: 1 MRPSGRRPDQLRRIAFTCNYTKHAEGSVLVEFGDTRVICTASVEERVPPFLKGKGSGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ ++L ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRATHERTGREAARGKQGGRTMEIQRLIGRSLRAALNLEALGERTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL +Q + S K + + V G +A++S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGGYVALVLAVQRLLK-SRKIKTNPV-HGQIASVSVGICQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D N VM D+G +E+QG+AE F +D AML LA+ IADL+ Q++ + Sbjct: 179 EDCDAETDMNVVMNDAGAFIEIQGTAEGHAFRRDELDAMLRLAEAGIADLLLHQQEAL 236 >gi|226942447|ref|YP_002797520.1| ribonuclease PH [Azotobacter vinelandii DJ] gi|259494117|sp|C1DI48|RNPH_AZOVD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226717374|gb|ACO76545.1| ribonuclease PH [Azotobacter vinelandii DJ] Length = 239 Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +++AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGKGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R+ REA GRQGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G PI+DLDY E Sbjct: 123 DGGTRTASITGAMVALVDALAVLK--KRGALKGDPLKQMVAAVSVGIYQGEPILDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMTD+G +EVQG+AE F + AML LA I +L +LQ+ V+++ Sbjct: 181 DSDAETDLNVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALATQGIRELFELQRAVLAD 239 >gi|198284080|ref|YP_002220401.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667606|ref|YP_002426735.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248601|gb|ACH84194.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519819|gb|ACK80405.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270] Length = 242 Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 125/235 (53%), Positives = 164/235 (69%), Gaps = 4/235 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR + +R + +TR +K+AEGS L+ GDT +L TA++EEKVP ++R GW+T Sbjct: 2 IRPSGRNADALRPVQVTRNFTKHAEGSVLIACGDTKVLCTASVEEKVPPFLRGAGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T RV RE+ GR GGR+ EIQR+IGR+LR+ VDL ALG R I +DCDV+Q Sbjct: 62 AEYSMLPRATRERVARESAKGRIGGRTHEIQRLIGRSLRAAVDLQALGERTIWVDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA +A+ D +QH+ QL + L+ VAA+S G+ G ++DLDY Sbjct: 122 ADGGTRTASITGACLAVADAVQHLRTVG---QLRNNPLRDWVAAVSVGVYQGQAVLDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS DVD N VMT +G VEVQG+AE A FS + ML LA+ IA+L+ Q Sbjct: 179 AEDSNADVDMNVVMTGAGAFVEVQGTAEGAVFSAEQMAEMLALARKGIAELVARQ 233 >gi|15600527|ref|NP_254021.1| ribonuclease PH [Pseudomonas aeruginosa PAO1] gi|116053481|ref|YP_793808.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14] gi|218894437|ref|YP_002443307.1| ribonuclease PH [Pseudomonas aeruginosa LESB58] gi|254237972|ref|ZP_04931295.1| ribonuclease PH [Pseudomonas aeruginosa C3719] gi|254243780|ref|ZP_04937102.1| ribonuclease PH [Pseudomonas aeruginosa 2192] gi|296392194|ref|ZP_06881669.1| ribonuclease PH [Pseudomonas aeruginosa PAb1] gi|313106761|ref|ZP_07792977.1| ribonuclease PH [Pseudomonas aeruginosa 39016] gi|12230959|sp|P50597|RNPH_PSEAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|122256498|sp|Q02E28|RNPH_PSEAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736925|sp|B7V5M5|RNPH_PSEA8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|46015434|pdb|1R6M|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Pseudomonas Aeruginosa In Complex With Phosphate gi|9951653|gb|AAG08719.1|AE004946_3 ribonuclease PH [Pseudomonas aeruginosa PAO1] gi|115588702|gb|ABJ14717.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14] gi|126169903|gb|EAZ55414.1| ribonuclease PH [Pseudomonas aeruginosa C3719] gi|126197158|gb|EAZ61221.1| ribonuclease PH [Pseudomonas aeruginosa 2192] gi|218774666|emb|CAW30483.1| ribonuclease PH [Pseudomonas aeruginosa LESB58] gi|310879479|gb|EFQ38073.1| ribonuclease PH [Pseudomonas aeruginosa 39016] Length = 239 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 124/238 (52%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGATVALIDALAVLK--KRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N VMTD+G +EVQG+AE A F AML LA+ + +L +LQ+ ++ Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238 >gi|218551172|ref|YP_002384963.1| ribonuclease PH [Escherichia fergusonii ATCC 35469] gi|218560715|ref|YP_002393628.1| ribonuclease PH [Escherichia coli S88] gi|218691927|ref|YP_002400139.1| ribonuclease PH [Escherichia coli ED1a] gi|218702410|ref|YP_002410039.1| ribonuclease PH [Escherichia coli IAI39] gi|218707277|ref|YP_002414796.1| ribonuclease PH [Escherichia coli UMN026] gi|26110719|gb|AAN82903.1|AE016769_18 Ribonuclease PH [Escherichia coli CFT073] gi|91074734|gb|ABE09615.1| ribonuclease PH [Escherichia coli UTI89] gi|218358713|emb|CAQ91369.1| ribonuclease PH [Escherichia fergusonii ATCC 35469] gi|218367484|emb|CAR05266.1| ribonuclease PH [Escherichia coli S88] gi|218372396|emb|CAR20270.1| ribonuclease PH [Escherichia coli IAI39] gi|218429491|emb|CAR10314.1| ribonuclease PH [Escherichia coli ED1a] gi|218434374|emb|CAR15299.1| ribonuclease PH [Escherichia coli UMN026] Length = 246 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 9 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 69 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + N + +KG VAA+S G++ G + DL+Y Sbjct: 129 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 187 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 246 >gi|288942595|ref|YP_003444835.1| ribonuclease PH [Allochromatium vinosum DSM 180] gi|288897967|gb|ADC63803.1| ribonuclease PH [Allochromatium vinosum DSM 180] Length = 241 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 119/240 (49%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ ++ R I TR +++AEGS LV+FGDT +L TA++E +VP +++ GWIT Sbjct: 1 MRPSQRRPDEARPICFTRGFTRHAEGSVLVEFGDTRVLCTASVEPRVPPFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R+ REA G+QGGR+ EIQR+IGRALR+ V L+ALG R I +DCDV+Q Sbjct: 61 AEYGMLPRSTGERMPREAARGKQGGRTLEIQRLIGRALRAAVYLNALGERTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL + + H+ ++ + +K +AA+S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALREAIDHL--LASGQLTADPIKTQIAAVSVGIYQGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + D N VM G +EVQG+AE F++ A+L L I + Q+ + + Sbjct: 179 EDSSAETDMNLVMDGEGRFIEVQGTAEGHPFTRAELDALLELGAAGIRSIQAAQRAALED 238 >gi|238902734|ref|YP_002928530.1| defective ribonuclease PH [Escherichia coli BW2952] gi|298351813|sp|P0CG18|RNPH_ECOBW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|238860742|gb|ACR62740.1| defective ribonuclease PH [Escherichia coli BW2952] gi|260447338|gb|ACX37760.1| ribonuclease PH [Escherichia coli DH1] gi|315138225|dbj|BAJ45384.1| ribonuclease PH [Escherichia coli DH1] Length = 238 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAALAN 238 >gi|188495519|ref|ZP_03002789.1| ribonuclease PH [Escherichia coli 53638] gi|188490718|gb|EDU65821.1| ribonuclease PH [Escherichia coli 53638] gi|332345611|gb|AEE58945.1| ribonuclease PH [Escherichia coli UMNK88] Length = 238 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|110643884|ref|YP_671614.1| ribonuclease PH [Escherichia coli 536] gi|191170501|ref|ZP_03032054.1| ribonuclease PH [Escherichia coli F11] gi|300983477|ref|ZP_07176624.1| ribonuclease PH [Escherichia coli MS 200-1] gi|306816009|ref|ZP_07450147.1| ribonuclease PH [Escherichia coli NC101] gi|123048705|sp|Q0TBG6|RNPH_ECOL5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110345476|gb|ABG71713.1| ribonuclease PH [Escherichia coli 536] gi|190909309|gb|EDV68895.1| ribonuclease PH [Escherichia coli F11] gi|300306941|gb|EFJ61461.1| ribonuclease PH [Escherichia coli MS 200-1] gi|305850405|gb|EFM50862.1| ribonuclease PH [Escherichia coli NC101] gi|324012723|gb|EGB81942.1| ribonuclease PH [Escherichia coli MS 60-1] Length = 238 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVVTQKAALAN 238 >gi|261400742|ref|ZP_05986867.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970] gi|269209512|gb|EEZ75967.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970] Length = 242 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 116/236 (49%), Positives = 169/236 (71%), Gaps = 2/236 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEY Sbjct: 7 TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VALH + + S+ ++ VAAIS G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALHIAVGKL--ISDGILTENPIREAVAAISAGIVGGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240 >gi|117617491|ref|YP_858647.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558898|gb|ABK35846.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 257 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 126/239 (52%), Positives = 165/239 (69%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R Q+R +++TR +K+AEGS LV+FG+T +L TA+++ VP +++ GW+TA Sbjct: 22 RPSDRTAAQLRPVTITRHFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTA 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST +R+ REA SG+Q GR+ EI R+I R+LR+ VDL+ALG I +DCDV+QA Sbjct: 82 EYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 141 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA VAL D L M + K L Q LK +AA+S GM G I DL+Y Sbjct: 142 DGGTRTAAITGACVALVDALNWMVE---KGMLKQSPLKQMIAAVSVGMYQGEAICDLEYI 198 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT+ G I+EVQG+AE F+ + ML LAK IAD+I LQK ++ Sbjct: 199 EDSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQSLA 257 >gi|85060191|ref|YP_455893.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans'] gi|123518740|sp|Q2NQT7|RNPH_SODGM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|84780711|dbj|BAE75488.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans'] Length = 239 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 164/239 (68%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R +++TR +++AEGS L+ FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSVQQVRPVTITRHFTRHAEGSVLIAFGDTRVLCTASVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLTKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D L M+ K QL + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALSSMQ---KKGQLKTNPMKGFVAAISVGIVAGEAVCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FSQ +L LA+ I L++ QK + Sbjct: 178 VEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSQQELNTLLELARGGIDSLVQAQKAAL 236 >gi|212635008|ref|YP_002311533.1| ribonuclease PH [Shewanella piezotolerans WP3] gi|226736939|sp|B8CM22|RNPH_SHEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|212556492|gb|ACJ28946.1| Ribonuclease PH [Shewanella piezotolerans WP3] Length = 237 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T Sbjct: 1 MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ LG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++E+QG+AE F+ + ++L+LAK I +++ +QK +S Sbjct: 179 EDSAAETDMNVVMTETGKMIEIQGTAEGEPFTHEELLSLLDLAKHGIREIVDIQKASLS 237 >gi|71066420|ref|YP_265147.1| ribonuclease PH [Psychrobacter arcticus 273-4] gi|123647900|sp|Q4FQJ5|RNPH_PSYA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|71039405|gb|AAZ19713.1| RNAse PH [Psychrobacter arcticus 273-4] Length = 238 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ NQ+R IS R +K+AEGS LV FGDT +L TA++E VP W++ GWIT Sbjct: 1 MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I +DCDV+Q Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA +AL D L+ ++ K + L G VAA+S GM G +DL+Y Sbjct: 121 ADGGTRTASVTGAAIALIDALESIQ--KTKKLKADPLIGLVAAVSVGMKDGEAYLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED++ D D N VMT G +E+QG+AE F++ ML LA+ IA+LI +QK + Sbjct: 179 EDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLVLAEKGIAELIAMQKTAL 236 >gi|330831556|ref|YP_004394508.1| RNase PH [Aeromonas veronii B565] gi|328806692|gb|AEB51891.1| RNase PH [Aeromonas veronii B565] Length = 238 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 125/239 (52%), Positives = 165/239 (69%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R Q+R +++TR +K+AEGS LV+FG+T +L TA+++ VP +++ GW+TA Sbjct: 3 RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST +R+ REA SG+Q GR+ EI R+I R+LR+ VDL+ALG I +DCDV+QA Sbjct: 63 EYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTA+ITGA VAL D L M + K + Q LK +AA+S GM G I DL+Y Sbjct: 123 DGGTRTASITGACVALVDALNWMVE---KGMIKQSPLKQMIAAVSVGMYQGEAICDLEYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT+ G I+EVQG+AE F+ + ML LAK IAD+I LQK +S Sbjct: 180 EDSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQSLS 238 >gi|237748601|ref|ZP_04579081.1| ribonuclease PH [Oxalobacter formigenes OXCC13] gi|229379963|gb|EEO30054.1| ribonuclease PH [Oxalobacter formigenes OXCC13] Length = 247 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 124/243 (51%), Positives = 163/243 (67%), Gaps = 6/243 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR + MR I R +KYAEGS L FGDT ++ TA++EE VP ++R GW+T Sbjct: 7 IRANGRPLDSMRSIEFIRNYTKYAEGSVLTVFGDTKVICTASIEESVPPFLRGRGRGWLT 66 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA GRQ GR+QEIQR+IGR++R+ DL A G R + +DCDVIQ Sbjct: 67 AEYGMLPRSTHTRMDREAARGRQSGRTQEIQRLIGRSIRAAFDLDAFGERTLKLDCDVIQ 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTA+I+G +A +D M E +K L+ VAAIS G+ G P++DLD Sbjct: 127 ADGGTRTASISGVMIAAYDAFSMMVEEGLIDKVP----LRHFVAAISVGVNQGVPLLDLD 182 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDST D D N VMT++G VE+QG+AE FS+ ML +A+ I++LI +QK V+ Sbjct: 183 YQEDSTCDTDMNVVMTEAGEFVEIQGTAEGGAFSRQTLNDMLGMAEKGISELIGMQKKVL 242 Query: 239 SNE 241 E Sbjct: 243 GLE 245 >gi|94496905|ref|ZP_01303479.1| RNase PH [Sphingomonas sp. SKA58] gi|94423581|gb|EAT08608.1| RNase PH [Sphingomonas sp. SKA58] Length = 238 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 119/211 (56%), Positives = 151/211 (71%), Gaps = 2/211 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR I++ + +AEGSCLV FGDT +L TA++EEKVP ++R GW+T Sbjct: 1 MRPSGRAPDQMRNITMEPGFTIHAEGSCLVSFGDTRVLCTASVEEKVPPFLRGKGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI++DCDVIQ Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRTVVDLKALGERQIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+G+WVAL + + Q + K VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAISGSWVALRIAVDKLLASGALTQDPIIQK--VAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATF 211 EDS + DAN ++T G EVQ +AE A + Sbjct: 179 EDSNAETDANLILTGDGKFAEVQATAEGAAY 209 >gi|124267890|ref|YP_001021894.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1] gi|124260665|gb|ABM95659.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1] Length = 241 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R + +R +++TRR +K+AEGS L+ FGDT +L TA++EEKVP R + GW+TA Sbjct: 5 RTQARAADALRPLTITRRYTKHAEGSVLIAFGDTKVLCTASVEEKVPPHKRGSGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERSIHLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VA HD + + K S + + VAA+S G++ G P++DL+Y E Sbjct: 125 DGGTRTAAITGAYVAAHDAVTWLL-AQGKIGASPI-REPVAAVSVGIVQGTPLLDLEYIE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VMT +GH +EVQG+AE A FS+ +L LA+ I L+ Q + + Sbjct: 183 DSACDTDMNVVMTGAGHFIEVQGTAEGAAFSRAEMDRLLALAEQGIRTLVAAQAAALKD 241 >gi|145637126|ref|ZP_01792788.1| ribonuclease PH [Haemophilus influenzae PittHH] gi|145640205|ref|ZP_01795789.1| ribonuclease PH [Haemophilus influenzae R3021] gi|148825447|ref|YP_001290200.1| ribonuclease PH [Haemophilus influenzae PittEE] gi|229846361|ref|ZP_04466469.1| ribonuclease PH [Haemophilus influenzae 7P49H1] gi|166228284|sp|A5UAL6|RNPH_HAEIE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145269571|gb|EDK09512.1| ribonuclease PH [Haemophilus influenzae PittHH] gi|145274791|gb|EDK14653.1| ribonuclease PH [Haemophilus influenzae 22.4-21] gi|148715607|gb|ABQ97817.1| ribonuclease PH [Haemophilus influenzae PittEE] gi|229810454|gb|EEP46172.1| ribonuclease PH [Haemophilus influenzae 7P49H1] gi|309972566|gb|ADO95767.1| Ribonuclease PH [Haemophilus influenzae R2846] Length = 238 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINSL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREAL 236 >gi|213579701|ref|ZP_03361527.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 238 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ +QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVAMQKAALEN 238 >gi|21232680|ref|NP_638597.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767292|ref|YP_242054.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004] gi|188990329|ref|YP_001902339.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. B100] gi|24638173|sp|Q8P5T5|RNPH_XANCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|81306727|sp|Q4UY39|RNPH_XANC8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736950|sp|B0RP96|RNPH_XANCB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|21114489|gb|AAM42521.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572624|gb|AAY48034.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004] gi|167732089|emb|CAP50281.1| ribonuclease PH [Xanthomonas campestris pv. campestris] Length = 241 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L +LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGVGELFELQRAALA 240 >gi|93006978|ref|YP_581415.1| ribonuclease PH [Psychrobacter cryohalolentis K5] gi|122414849|sp|Q1Q8S2|RNPH_PSYCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|92394656|gb|ABE75931.1| RNAse PH [Psychrobacter cryohalolentis K5] Length = 238 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ NQ+R IS R +K+AEGS LV FGDT +L TA++E VP W++ GWIT Sbjct: 1 MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I +DCDV+Q Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA +AL D L+ ++ K + L G VAA+S GM G +DL+Y Sbjct: 121 ADGGTRTASVTGAAIALIDALESIQ--KTKKLKADPLIGLVAAVSVGMKDGKAYLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED++ D D N VMT G +E+QG+AE F++ ML LA+ IA+LI +QK + Sbjct: 179 EDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLILAEKGIAELIAMQKTAL 236 >gi|294011052|ref|YP_003544512.1| ribonuclease PH [Sphingobium japonicum UT26S] gi|292674382|dbj|BAI95900.1| ribonuclease PH [Sphingobium japonicum UT26S] Length = 238 Score = 244 bits (622), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 118/211 (55%), Positives = 153/211 (72%), Gaps = 2/211 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR+I++ + +AEGSCLV FGDT +L TA++EEKVP ++R GW+T Sbjct: 1 MRPSGRAPDQMRDITMEPGFTIHAEGSCLVSFGDTRVLCTASIEEKVPPFLRGKGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI++DCDVIQ Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+G+WVAL + + S +++ VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAISGSWVALRIAIDGLL-ASGALAEDPIVQ-KVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATF 211 EDS + DAN ++T G EVQ +AE AT+ Sbjct: 179 EDSNAEADANLILTGDGKFAEVQATAEGATY 209 >gi|82779134|ref|YP_405483.1| ribonuclease PH [Shigella dysenteriae Sd197] gi|309784379|ref|ZP_07679018.1| ribonuclease PH [Shigella dysenteriae 1617] gi|123561122|sp|Q329L3|RNPH_SHIDS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|81243282|gb|ABB63992.1| RNase PH [Shigella dysenteriae Sd197] gi|308927886|gb|EFP73354.1| ribonuclease PH [Shigella dysenteriae 1617] Length = 238 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +AL D LQ + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACMALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|254465231|ref|ZP_05078642.1| ribonuclease PH [Rhodobacterales bacterium Y4I] gi|206686139|gb|EDZ46621.1| ribonuclease PH [Rhodobacterales bacterium Y4I] Length = 224 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 118/222 (53%), Positives = 161/222 (72%), Gaps = 2/222 (0%) Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ T GW+TAEYGMLPR+T R Sbjct: 1 MSIETGFTKHAEGSCLIKVGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRATNTR 60 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+QADGGTR A+ITG Sbjct: 61 MRREASSGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGGTRCASITGG 120 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 WVAL + + + + +L V+A+SCG+ G P++DLDY EDS VD NF+M Sbjct: 121 WVALRLAVNKLMKAGD-VHIDPLLD-PVSAVSCGIYAGQPVLDLDYPEDSEAGVDGNFIM 178 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 T SG ++EVQ SAE + FS+D +++LA +L ++QK Sbjct: 179 TGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTVELAEMQK 220 >gi|301382581|ref|ZP_07230999.1| ribonuclease PH [Pseudomonas syringae pv. tomato Max13] gi|302063052|ref|ZP_07254593.1| ribonuclease PH [Pseudomonas syringae pv. tomato K40] gi|302133600|ref|ZP_07259590.1| ribonuclease PH [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 240 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAASVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L ++Q+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 240 >gi|170766572|ref|ZP_02901025.1| ribonuclease PH [Escherichia albertii TW07627] gi|170124010|gb|EDS92941.1| ribonuclease PH [Escherichia albertii TW07627] Length = 238 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VENGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|119472968|ref|ZP_01614824.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium TW-7] gi|119444637|gb|EAW25947.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium TW-7] Length = 237 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 127/239 (53%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R NQ+R +S TR + +AEGS LV+FG+T +L TAT+E VP +++ GWI Sbjct: 1 MRPSQRTPNQIRPVSFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRNAREASRGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L HM + S LK +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N ++T++G I+EVQG+AE FS D +L LAK I ++I +QK ++ Sbjct: 179 EDSAAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237 >gi|16272231|ref|NP_438442.1| ribonuclease PH [Haemophilus influenzae Rd KW20] gi|68248879|ref|YP_247991.1| ribonuclease PH [Haemophilus influenzae 86-028NP] gi|229844976|ref|ZP_04465113.1| ribonuclease PH [Haemophilus influenzae 6P18H1] gi|260580844|ref|ZP_05848669.1| ribonuclease PH [Haemophilus influenzae RdAW] gi|319896608|ref|YP_004134801.1| ribonuclease ph [Haemophilus influenzae F3031] gi|1173102|sp|P44444|RNPH_HAEIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|81336705|sp|Q4QNR6|RNPH_HAEI8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|1573239|gb|AAC21939.1| ribonuclease PH (rph) [Haemophilus influenzae Rd KW20] gi|68057078|gb|AAX87331.1| ribonuclease PH [Haemophilus influenzae 86-028NP] gi|229812110|gb|EEP47802.1| ribonuclease PH [Haemophilus influenzae 6P18H1] gi|260092467|gb|EEW76405.1| ribonuclease PH [Haemophilus influenzae RdAW] gi|317432110|emb|CBY80461.1| ribonuclease PH [Haemophilus influenzae F3031] Length = 238 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREAL 236 >gi|326403855|ref|YP_004283937.1| ribonuclease PH [Acidiphilium multivorum AIU301] gi|325050717|dbj|BAJ81055.1| ribonuclease PH [Acidiphilium multivorum AIU301] Length = 243 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 117/237 (49%), Positives = 162/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R++ + S++AEGS L++ G T +L A++E +VP ++R GW+TA Sbjct: 6 RPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD +ALG I +DCDV+ A Sbjct: 66 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR AAITGAWVAL ++ + + + L G VAA+SCG+ G P++DLDY E Sbjct: 126 DGGTRCAAITGAWVALALAIRTLRKAN--VIATDPLIGQVAAVSCGVFGGVPVLDLDYAE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS + DANFV+T +G IVE+Q +AERATF + F +L LA+ A+L Q+ + Sbjct: 184 DSNAEADANFVLTGTGGIVEIQATAERATFEEATFGTLLGLARKGTAELFTAQRAAL 240 >gi|307822918|ref|ZP_07653148.1| ribonuclease PH [Methylobacter tundripaludum SV96] gi|307735693|gb|EFO06540.1| ribonuclease PH [Methylobacter tundripaludum SV96] Length = 345 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 122/241 (50%), Positives = 166/241 (68%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R+I T +K+AEGS LV+FGDT +L TA+++ VP +++ GWIT Sbjct: 106 MRPSGRNPDQLRDIKFTCGFTKHAEGSVLVEFGDTRVLCTASVDRSVPRFLKGKGEGWIT 165 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA +G+QGGR+ EIQR+IGR+LR+ +DL ALG I+IDCDV+Q Sbjct: 166 AEYGMLPRSTHSRMGREASNGKQGGRTLEIQRLIGRSLRAAIDLKALGEHTIMIDCDVLQ 225 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL +Q M K + L G +A++S G+ G P++DLDY Sbjct: 226 ADGGTRTASITGGFVALSLAVQKM--LKRKQIKTNPLHGQIASVSVGIYNGVPVLDLDYA 283 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM D+ +EVQG+AE F ++ AML LA I +L++ Q+ I N Sbjct: 284 EDSNAETDMNVVMNDAAAFIEVQGTAEGHAFRKEELDAMLALAGSGIKELLEKQRFAIEN 343 Query: 241 E 241 Sbjct: 344 H 344 >gi|56707964|ref|YP_169860.1| ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4] gi|110670435|ref|YP_666992.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC198] gi|134302244|ref|YP_001122213.1| ribonuclease PH [Francisella tularensis subsp. tularensis WY96-3418] gi|208780450|ref|ZP_03247790.1| ribonuclease PH [Francisella novicida FTG] gi|224457045|ref|ZP_03665518.1| ribonuclease PH [Francisella tularensis subsp. tularensis MA00-2987] gi|254370452|ref|ZP_04986457.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033] gi|254372353|ref|ZP_04987844.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|254874766|ref|ZP_05247476.1| ribonuclease PH [Francisella tularensis subsp. tularensis MA00-2987] gi|61215787|sp|Q5NGI2|RNPH_FRATT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123169418|sp|Q14HY4|RNPH_FRAT1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228282|sp|A4IYU1|RNPH_FRATW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|54112559|gb|AAV28913.1| NT02FT0689 [synthetic construct] gi|56604456|emb|CAG45491.1| Ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4] gi|110320768|emb|CAL08874.1| Ribonuclease PH [Francisella tularensis subsp. tularensis FSC198] gi|134050021|gb|ABO47092.1| ribonuclease PH [Francisella tularensis subsp. tularensis WY96-3418] gi|151568695|gb|EDN34349.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033] gi|151570082|gb|EDN35736.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3549] gi|208743596|gb|EDZ89900.1| ribonuclease PH [Francisella novicida FTG] gi|254840765|gb|EET19201.1| ribonuclease PH [Francisella tularensis subsp. tularensis MA00-2987] gi|282159150|gb|ADA78541.1| ribonuclease PH [Francisella tularensis subsp. tularensis NE061598] Length = 235 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 116/231 (50%), Positives = 162/231 (70%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231 >gi|261377578|ref|ZP_05982151.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685] gi|269146325|gb|EEZ72743.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685] Length = 242 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 116/236 (49%), Positives = 169/236 (71%), Gaps = 2/236 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEY Sbjct: 7 TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VALH + + S+ ++ VAAIS G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALHIAVGKL--ISDGILTENPIREAVAAISVGIVGGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEQGIRELVRYQQNALS 240 >gi|213970694|ref|ZP_03398819.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1] gi|213924528|gb|EEB58098.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1] Length = 262 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 25 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 84 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 85 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 144 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA S GM G P++DLDY E Sbjct: 145 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAASVGMYQGEPVLDLDYLE 203 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L ++Q+ +++ Sbjct: 204 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 262 >gi|88861108|ref|ZP_01135742.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata D2] gi|88816830|gb|EAR26651.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata D2] Length = 237 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GWIT Sbjct: 1 MRPSERTLNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRCDREAARGKQSGRTMEIQRLIARSLRAAVDLKALGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L HM + + LK +AAIS G+ G PI DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINTNPLKYMIAAISVGIYKGEPITDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N +MT++G ++EVQG+AE FS + +L LAK I ++I +QK ++ Sbjct: 179 EDSAAETDMNVIMTETGKLIEVQGTAEAEPFSFEELDQLLTLAKHSIREIIDIQKQTLA 237 >gi|119475382|ref|ZP_01615735.1| ribonuclease PH [marine gamma proteobacterium HTCC2143] gi|119451585|gb|EAW32818.1| ribonuclease PH [marine gamma proteobacterium HTCC2143] Length = 239 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 124/234 (52%), Positives = 162/234 (69%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+REI++TR + +AEGS LV FGDT ++ TA++E+ VP ++R T GWITA Sbjct: 3 RPSGRSIDQLREITITRNFTCHAEGSVLVTFGDTKVICTASVEKNVPHFLRGTGQGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL LG QI IDCDVIQA Sbjct: 63 EYGMLPRSTGDRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKVLGENQITIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D + M + LK +AA+S G+ G ++DLDY E Sbjct: 123 DGGTRTASITGACVALVDAITAMRE--QGIITGNPLKHMIAAVSVGIYQGTAVLDLDYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS + D N +MT+ G +EVQG+AE +S+ +L LA I LI+ Q+ Sbjct: 181 DSNAETDMNVIMTEQGGFIEVQGTAEGEPYSRIELDQLLGLADAGIQTLIEKQR 234 >gi|330813340|ref|YP_004357579.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063] gi|327486435|gb|AEA80840.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063] Length = 237 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/234 (50%), Positives = 166/234 (70%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R+ ++R+I +T K A+ SCL+K GDTH++ TA++EEKVP W++ + GW+TAEYGM Sbjct: 5 RKNLELRKIEITTDFIKNADASCLIKSGDTHVVCTASIEEKVPRWLKGSGKGWVTAEYGM 64 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPRST R++RE+ G+ GGR+ EIQR+IGR+LR+ ++L LG I IDCDV+QADGGT Sbjct: 65 LPRSTHERMRRESSVGKVGGRTSEIQRLIGRSLRASMNLKLLGEYLITIDCDVLQADGGT 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITG +VAL C+ M K +K +VAAISCG++ G ++DLDY EDS Sbjct: 125 RTASITGGFVALKKCIDLM--IKRKQINHNPIKSYVAAISCGIVNGEFLMDLDYEEDSQA 182 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DVD+N+VM D G I+E+Q + E+ T S++ F ML +K IA++I LQK +S Sbjct: 183 DVDSNYVMNDKGDIIELQLTGEQTTCSEEEFMKMLRHSKSSIAEIITLQKKALS 236 >gi|301168926|emb|CBW28521.1| ribonuclease PH (pseudogene) [Haemophilus influenzae 10810] Length = 238 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/224 (53%), Positives = 161/224 (71%), Gaps = 2/224 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS + D N VM + G ++EVQG+AE FS + +L+LAK Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAK 222 >gi|87121112|ref|ZP_01077003.1| ribonuclease PH [Marinomonas sp. MED121] gi|86163604|gb|EAQ64878.1| ribonuclease PH [Marinomonas sp. MED121] Length = 239 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 118/238 (49%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R++ +TR +K+AEGS L++ GDT ++ TATL VP +++ GWIT Sbjct: 1 MRPSGRAVDQLRDLKITRNFTKHAEGSVLIECGDTKVICTATLVPGVPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +RV REA G+Q GR+ EIQR+IGR+LR+ VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRVDREAARGKQTGRTVEIQRLIGRSLRAAVDLKKLGEHTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL D ++ + + K + + ++ +AAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASITGGFVALADAVKKLVE-RKKIKENPIVS-QIAAISVGVYKGEPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N +M D G +E+QG+AE FS +H ML +A+ I ++++ Q+D + Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLKVARKGINEILQAQRDAL 236 >gi|254373825|ref|ZP_04989308.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548] gi|151571546|gb|EDN37200.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548] Length = 235 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 116/231 (50%), Positives = 161/231 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVSGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 EDS + D N VM G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231 >gi|118496994|ref|YP_898044.1| ribonuclease PH [Francisella tularensis subsp. novicida U112] gi|194324228|ref|ZP_03058002.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE] gi|166228281|sp|A0Q4X5|RNPH_FRATN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|118422900|gb|ABK89290.1| ribonuclease PH [Francisella novicida U112] gi|194321675|gb|EDX19159.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE] Length = 235 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 116/231 (50%), Positives = 162/231 (70%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPEFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231 >gi|260913198|ref|ZP_05919680.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] gi|260632785|gb|EEX50954.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] Length = 238 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R+I +TR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPNERANHQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + +N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALCDAINGL--VANGTLKTNPIKGLVAAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE F+ D +L+LAK + Q+ ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFNHDELLTLLDLAKQGCETIFVAQRQALA 237 >gi|332968500|gb|EGK07563.1| tRNA nucleotidyltransferase [Psychrobacter sp. 1501(2011)] Length = 238 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ +Q+R ++ R +K+AEGS LV FGDT +L TA++E VP W++ GW+T Sbjct: 1 MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASVESGVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR++VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLNKLGENTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +AL D L+ ++ K + L G VAA+S G+ G ++DL+Y Sbjct: 121 ADGGTRTASITGAAIALIDALESLQ--QKKKLKADPLVGLVAAVSVGVKNGEILLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ D D N VMT G +E+QG+AE F++ ML +A+ IADLIKLQ+ + Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLIKLQQTAL 236 >gi|145635181|ref|ZP_01790886.1| ribonuclease PH [Haemophilus influenzae PittAA] gi|145267602|gb|EDK07601.1| ribonuclease PH [Haemophilus influenzae PittAA] Length = 238 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINSL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++V+ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREVL 236 >gi|62263530|gb|AAX78169.1| unknown protein [synthetic construct] Length = 270 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 116/231 (50%), Positives = 162/231 (70%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 27 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 86 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 87 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 146 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 147 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 206 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 207 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 257 >gi|331007601|ref|ZP_08330748.1| Ribonuclease PH [gamma proteobacterium IMCC1989] gi|330418594|gb|EGG93113.1| Ribonuclease PH [gamma proteobacterium IMCC1989] Length = 239 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 123/229 (53%), Positives = 157/229 (68%), Gaps = 2/229 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q R I LT+ +K+AEGS L++FG+T ++ TA++E VP ++R GWITA Sbjct: 3 RPSGRTPDQTRPIRLTKNFTKHAEGSVLIEFGETKVICTASIENSVPGFLRGQGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST +R+ REA G+Q GR+ EIQR+IGR+LR+ VDL LG R I IDCDVIQA Sbjct: 63 EYGMLPRSTHSRMNREAARGKQTGRTVEIQRLIGRSLRAAVDLEVLGERTITIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + +N L +A+IS G+ G ++DLDY E Sbjct: 123 DGGTRTASITGACVALADALNKL--LANGTLKQNPLTRMIASISVGIYQGEAVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 DS+ D D N VM D G ++EVQG+AE FS+ F ML LAK I +L Sbjct: 181 DSSADTDMNIVMADDGGMIEVQGTAEGEPFSEAEFMQMLTLAKKGIKEL 229 >gi|215488923|ref|YP_002331354.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69] gi|254808587|sp|B7UM50|RNPH_ECO27 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|215266995|emb|CAS11440.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69] gi|323965909|gb|EGB61357.1| ribonuclease PH [Escherichia coli M863] gi|323975137|gb|EGB70242.1| ribonuclease PH [Escherichia coli TW10509] gi|327250769|gb|EGE62471.1| ribonuclease PH [Escherichia coli STEC_7v] Length = 238 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|145639813|ref|ZP_01795414.1| ribonuclease PH [Haemophilus influenzae PittII] gi|145271031|gb|EDK10947.1| ribonuclease PH [Haemophilus influenzae PittII] gi|309750310|gb|ADO80294.1| Ribonuclease PH [Haemophilus influenzae R2866] Length = 238 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/224 (53%), Positives = 161/224 (71%), Gaps = 2/224 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS + D N VM + G ++EVQG+AE FS + +L+LAK Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAK 222 >gi|303229137|ref|ZP_07315938.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a] gi|302516150|gb|EFL58091.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a] Length = 257 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+EE VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSSQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + KF ++ AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAIDYTFGGFGKFPITD----FCAAISVGIGPEGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N V T +G+++EVQG+ E TFS+D +L+LA+ +L+ +Q+DV+ + Sbjct: 177 EDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRDVLGS 236 >gi|89255778|ref|YP_513140.1| ribonuclease PH [Francisella tularensis subsp. holarctica LVS] gi|115314270|ref|YP_762993.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156501746|ref|YP_001427811.1| ribonuclease PH [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009694|ref|ZP_02274625.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC200] gi|254367139|ref|ZP_04983171.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257] gi|290954430|ref|ZP_06559051.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1] gi|295312131|ref|ZP_06802940.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1] gi|122325696|sp|Q0BNH8|RNPH_FRATO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|122501188|sp|Q2A562|RNPH_FRATH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228280|sp|A7NA52|RNPH_FRATF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|89143609|emb|CAJ78797.1| Ribonuclease PH [Francisella tularensis subsp. holarctica LVS] gi|115129169|gb|ABI82356.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134252961|gb|EBA52055.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257] gi|156252349|gb|ABU60855.1| ribonuclease PH [Francisella tularensis subsp. holarctica FTNF002-00] Length = 235 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 116/231 (50%), Positives = 162/231 (70%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231 >gi|251793341|ref|YP_003008069.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700] gi|247534736|gb|ACS97982.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700] Length = 238 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ R I +TR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPNQRANNQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGLGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N LKG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALCDALNGL--VANGTLSKNPLKGLVAAISVGIVDGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ +++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDIIFQTQRAALAD 238 >gi|328676457|gb|AEB27327.1| Ribonuclease PH [Francisella cf. novicida Fx1] Length = 235 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 116/231 (50%), Positives = 161/231 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 EDS + D N VM G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231 >gi|319786148|ref|YP_004145623.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1] gi|317464660|gb|ADV26392.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1] Length = 241 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR +Q+R + + R +++AEGS LV FGDT +L TA+++ KVP ++R GW+T Sbjct: 4 VRPSGRAPDQLRPVRIERGFTRHAEGSVLVSFGDTRVLCTASIDNKVPAFLRGKGEGWVT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+IGR LR+ +D ALG R I +DCDV+Q Sbjct: 64 AEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRTLRACIDRGALGERTITLDCDVLQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D ++ ++ + + V G VAA+S G+ G P++DLDY Sbjct: 124 ADGGTRTAAITGAYVALVDAVRWLQG-RGEIKRDPVF-GAVAAVSVGVYRGVPVLDLDYA 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VM D G +E+QG+AE F +D A+L LA+ I L++LQ+ ++ Sbjct: 182 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLALAETGIGQLLELQRQALAG 241 >gi|317403008|gb|EFV83546.1| ribonuclease PH [Achromobacter xylosoxidans C54] Length = 244 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 167/239 (69%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +++R SL R ++YAEGS LVK G+TH+L TA++ EKVP +++ GW+TA Sbjct: 9 RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA Sbjct: 69 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTR A+ITGAWVA D + + + L+ ++ VAA+S G++ G P++DLDY Sbjct: 129 DGGTRCASITGAWVAASDAVALL---MQRGDLAVNPIRDAVAAVSVGLVQGRPVLDLDYE 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N +MT G VEVQG+ E ATF++ AML LA++ IA L++ Q+ ++ Sbjct: 186 EDSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDAMLGLAENGIAGLVRAQRAALA 244 >gi|16762575|ref|NP_458192.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767019|ref|NP_462634.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29144064|ref|NP_807406.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415624|ref|YP_152699.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161505731|ref|YP_001572843.1| ribonuclease PH [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|167549018|ref|ZP_02342777.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167995207|ref|ZP_02576297.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233258|ref|ZP_02658316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235339|ref|ZP_02660397.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241913|ref|ZP_02666845.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260512|ref|ZP_02682485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464958|ref|ZP_02698850.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818436|ref|ZP_02830436.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442896|ref|YP_002042983.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448918|ref|YP_002047765.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469845|ref|ZP_03075829.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735193|ref|YP_002116668.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249680|ref|YP_002148665.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264642|ref|ZP_03164716.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364551|ref|YP_002144188.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242269|ref|YP_002217694.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388670|ref|ZP_03215282.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928479|ref|ZP_03219678.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858971|ref|YP_002245622.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052654|ref|ZP_03345532.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425224|ref|ZP_03357974.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213615659|ref|ZP_03371485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647931|ref|ZP_03377984.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852853|ref|ZP_03382385.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238910231|ref|ZP_04654068.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289809748|ref|ZP_06540377.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824115|ref|ZP_06543712.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|61234148|sp|P0A2C3|RNPH_SALTY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61234155|sp|P0A2C4|RNPH_SALTI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|81599223|sp|Q5PC25|RNPH_SALPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043772|sp|A9MKN2|RNPH_SALAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736931|sp|B5EXE7|RNPH_SALA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736932|sp|B5FM66|RNPH_SALDC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736933|sp|B5R5G7|RNPH_SALEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736935|sp|B4T9Y6|RNPH_SALHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736936|sp|B4SXE4|RNPH_SALNS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736937|sp|B5BI17|RNPH_SALPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736938|sp|B4TZY4|RNPH_SALSV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|25289292|pir||AG0970 RNase PH [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16422302|gb|AAL22593.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504880|emb|CAD03259.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhi] gi|29139700|gb|AAO71266.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129881|gb|AAV79387.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|160867078|gb|ABX23701.1| hypothetical protein SARI_03907 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|194401559|gb|ACF61781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407222|gb|ACF67441.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456209|gb|EDX45048.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710695|gb|ACF89916.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632399|gb|EDX50883.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096028|emb|CAR61615.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213383|gb|ACH50780.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242897|gb|EDY25517.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291458|gb|EDY30810.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936785|gb|ACH74118.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605768|gb|EDZ04313.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321912|gb|EDZ07110.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325541|gb|EDZ13380.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327076|gb|EDZ13840.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332556|gb|EDZ19320.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338962|gb|EDZ25726.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344359|gb|EDZ31123.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350221|gb|EDZ36852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710774|emb|CAR35135.1| RNase PH [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248882|emb|CBG26736.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995995|gb|ACY90880.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160271|emb|CBW19794.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914760|dbj|BAJ38734.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088154|emb|CBY97916.1| RNase PH [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226787|gb|EFX51837.1| Ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322612900|gb|EFY09852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618965|gb|EFY15852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625258|gb|EFY22085.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630074|gb|EFY26847.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634266|gb|EFY31001.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635833|gb|EFY32542.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643029|gb|EFY39606.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645043|gb|EFY41574.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649857|gb|EFY46280.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653064|gb|EFY49399.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661117|gb|EFY57345.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662394|gb|EFY58607.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667272|gb|EFY63438.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674351|gb|EFY70444.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678441|gb|EFY74502.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680947|gb|EFY76981.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687117|gb|EFY83090.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323132094|gb|ADX19524.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195841|gb|EFZ81013.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198242|gb|EFZ83348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200860|gb|EFZ85930.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206614|gb|EFZ91572.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210473|gb|EFZ95359.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216239|gb|EGA00967.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220461|gb|EGA04915.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225325|gb|EGA09559.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228439|gb|EGA12570.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234260|gb|EGA18348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237245|gb|EGA21312.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244764|gb|EGA28768.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245861|gb|EGA29851.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250956|gb|EGA34832.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257296|gb|EGA40995.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262220|gb|EGA45781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264569|gb|EGA48073.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268858|gb|EGA52316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625479|gb|EGE31824.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332990583|gb|AEF09566.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 238 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238 >gi|163750741|ref|ZP_02157977.1| ribonuclease PH [Shewanella benthica KT99] gi|161329585|gb|EDQ00577.1| ribonuclease PH [Shewanella benthica KT99] Length = 237 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFEVGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG IIIDCDVIQ Sbjct: 61 AEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++E+QG+AE FS + +ML LAK I +++ +QK ++ Sbjct: 179 EDSEAETDMNVVMTETGQMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQKAALN 237 >gi|145589263|ref|YP_001155860.1| ribonuclease PH [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047669|gb|ABP34296.1| RNAse PH [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 246 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 122/237 (51%), Positives = 163/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +R ++++R +K+AEGS L+ FGDT +L TA++ +KVP R + GW+TA Sbjct: 11 RPSGRKPKDLRPVTISRAFTKHAEGSVLIAFGDTKVLCTASILDKVPPHKRGSGEGWVTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV +L LG R I +DCDV+QA Sbjct: 71 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFNLKTLGERTIHLDCDVLQA 130 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA D + + Q + VAAIS G+ G P++DLDY E Sbjct: 131 DGGTRTASITGAYVAARDAVNQLLKSGALTQ--DPIIDSVAAISVGIYQGAPVLDLDYPE 188 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS+ D D N VMT G ++EVQG+AE A FS+ A+L+LA+ I +L +LQ D + Sbjct: 189 DSSCDTDMNVVMTGKGGMIEVQGTAEGAAFSRAELNALLDLAEQGIQELTQLQIDSL 245 >gi|187931269|ref|YP_001891253.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147] gi|226736911|sp|B2SF43|RNPH_FRATM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|187712178|gb|ACD30475.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147] Length = 235 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 117/231 (50%), Positives = 162/231 (70%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I IDCDVIQ Sbjct: 61 AEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231 >gi|328675533|gb|AEB28208.1| Ribonuclease PH [Francisella cf. novicida 3523] Length = 235 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 115/231 (49%), Positives = 162/231 (70%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAA+S G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIKYMKQNGMLDEQANPLLSQVAAVSVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231 >gi|167036328|ref|YP_001671559.1| ribonuclease PH [Pseudomonas putida GB-1] gi|189043769|sp|B0KQ94|RNPH_PSEPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166862816|gb|ABZ01224.1| ribonuclease PH [Pseudomonas putida GB-1] Length = 240 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALCDALAVIKK-RGGLKAGNPLKHMIAAVSVGMYQGEAVLDLDYPE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240 >gi|148827427|ref|YP_001292180.1| ribonuclease PH [Haemophilus influenzae PittGG] gi|166228285|sp|A5UG91|RNPH_HAEIG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|148718669|gb|ABQ99796.1| ribonuclease PH [Haemophilus influenzae PittGG] Length = 238 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINSL--IENGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q+ V+ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKVL 236 >gi|171057396|ref|YP_001789745.1| ribonuclease PH [Leptothrix cholodnii SP-6] gi|170774841|gb|ACB32980.1| ribonuclease PH [Leptothrix cholodnii SP-6] Length = 241 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 123/234 (52%), Positives = 163/234 (69%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R + +TR +K+AEGS L++FGDT +L TA++EEKVP + + GW+TA Sbjct: 5 RPLGRAADALRPVRITRSYTKHAEGSVLIEFGDTQVLCTASVEEKVPPHKKGSGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR V DL+ALG R I+IDCDV+QA Sbjct: 65 EYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRCVFDLAALGERSILIDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD +Q + K + S + + VAA+S G+L G ++DL+Y E Sbjct: 125 DGGTRTASITGAFVAAHDAVQGL-IAQGKLKRSPI-RDFVAAVSVGILDGVALLDLEYVE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS D D N VMT +G VEVQG+AE FS+ +L L IA+L+ QK Sbjct: 183 DSACDTDMNIVMTGAGGFVEVQGTAEGVAFSRAEMDQLLALGSAGIAELVAAQK 236 >gi|295396715|ref|ZP_06806861.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294970461|gb|EFG46390.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 248 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/242 (50%), Positives = 167/242 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ N++RE+ +TR +AEGS LV+FG T +L A+L E VP W++ GW T Sbjct: 1 MRFDGRQANELREVKITRGWLDHAEGSVLVEFGRTRVLCAASLTEGVPRWMKGEGRGWAT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+DLS LG + +DCDV+Q Sbjct: 61 AEYAMLPRATHTRSSRESVKGKIGGRTHEISRLIGRSLRAVLDLSKLGENTLQVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + ++ + ++VLK VAAIS G++ G P++DL Y Sbjct: 121 ADGGTRTAAITGAYVALVDAVAKGKELGWIPKNAEVLKDSVAAISVGIVDGTPVLDLPYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST + D N VMT SG VEVQG+AE A F + ++L+LA+ A+L ++Q ++ Sbjct: 181 EDSTAETDMNVVMTGSGAFVEVQGTAEGAPFDRAELGSLLDLAEHGCAELARIQASALAQ 240 Query: 241 EV 242 ++ Sbjct: 241 DL 242 >gi|294667389|ref|ZP_06732607.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602830|gb|EFF46263.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 241 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDDGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241 >gi|148264306|ref|YP_001231012.1| ribonuclease PH [Geobacter uraniireducens Rf4] gi|189043764|sp|A5G3S1|RNPH_GEOUR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|146397806|gb|ABQ26439.1| RNAse PH [Geobacter uraniireducens Rf4] Length = 238 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 169/239 (70%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +RE+ +TR K+AEGS L++FGDT ++ TA++E VP ++R GW+T Sbjct: 1 MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASVEGSVPPFLRGKGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GGR+ EIQR+IGR+LR+V+D++ LG R ++IDCDVIQ Sbjct: 61 AEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VAL+D L + K +L+ + LK VAA+S G++ G P++DL+Y Sbjct: 121 ADGGTRTASITGAYVALYDALDGL---VKKGELAAMPLKEAVAAVSVGIVDGTPLLDLNY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ +VD NFVMT S VEVQG+AE F+ + AM +LA I L ++QK+ + Sbjct: 178 VEDSSAEVDMNFVMTSSNRFVEVQGTAEAEPFTVEQMDAMRDLAISGIKRLFQIQKEAL 236 >gi|229593356|ref|YP_002875475.1| ribonuclease PH [Pseudomonas fluorescens SBW25] gi|259494125|sp|C3K479|RNPH_PSEFS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|229365222|emb|CAY53520.1| ribonuclease PH [Pseudomonas fluorescens SBW25] Length = 240 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDALKVIKK-RGGLKAGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F AML LA+ + ++ +LQ +++ Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAALAD 240 >gi|145632517|ref|ZP_01788251.1| ribonuclease PH [Haemophilus influenzae 3655] gi|144986712|gb|EDJ93264.1| ribonuclease PH [Haemophilus influenzae 3655] Length = 238 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 168/239 (70%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHM-EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA VAL D + + E+ + K +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIENGTLKI---NPIKGLVSAISVGIVDGQAVCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ + Sbjct: 178 VEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREAL 236 >gi|21244122|ref|NP_643704.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306] gi|24638175|sp|Q8PH63|RNPH_XANAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|21109751|gb|AAM38240.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306] Length = 241 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERSFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLIKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241 >gi|86159780|ref|YP_466565.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-C] gi|123496476|sp|Q2IEX1|RNPH_ANADE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|85776291|gb|ABC83128.1| RNAse PH [Anaeromyxobacter dehalogenans 2CP-C] Length = 239 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 127/236 (53%), Positives = 167/236 (70%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +R I L RVSK+AEGSCLV+FGDTH+L TA+++EKVP + T GW+T Sbjct: 1 MRKNGRGPLDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA G+Q GR+ EIQR++GRALR+ VDL A+G R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTAAITGA+VAL +Q + + QL+ +K VAA+S G++ G +DLDY Sbjct: 121 ADGGTRTAAITGAYVAL---VQAVRSIQKRKQLAHDPVKRSVAAVSVGIVAGEVHLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST +VD N V T G +VEVQG+AE F++ ML+ A ++ L +LQ+ Sbjct: 178 DEDSTAEVDMNVVATGEGALVEVQGTAEGKPFARAELDRMLDAALAGLSRLKELQE 233 >gi|294627116|ref|ZP_06705704.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|325918115|ref|ZP_08180270.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937] gi|325922286|ref|ZP_08184067.1| RNAse PH [Xanthomonas gardneri ATCC 19865] gi|292598549|gb|EFF42698.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|325535661|gb|EGD07502.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937] gi|325547239|gb|EGD18312.1| RNAse PH [Xanthomonas gardneri ATCC 19865] Length = 241 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241 >gi|78042648|ref|YP_359184.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901] gi|123577019|sp|Q3AFA0|RNPH_CARHZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|77994763|gb|ABB13662.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901] Length = 254 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 127/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+++Q+R + +T K+AEGS L++ GDT ++ TAT+E+KVP + + GWIT Sbjct: 1 MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATVEDKVPPFAKGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA GRQ GR+ EIQR+IGRALR VVDL ALG R + IDCDVIQ Sbjct: 61 AEYGMLPRSTETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VAL L + LK VAA+S G++ G I+DL++ Sbjct: 121 ADGGTRTAAITGSFVALALALNKL--VEEGILPVIPLKDFVAAVSVGIVDGEEILDLNFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT S VEVQG+ E ATFS + +L LA+ I +LI+LQK + + Sbjct: 179 EDSKALVDMNVVMTGSNRFVEVQGTGEEATFSMEELQRLLTLAQKGIRELIELQKQALGD 238 >gi|49082078|gb|AAT50439.1| PA5334 [synthetic construct] Length = 240 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTRVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QG R+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGSRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGATVALIDALAVLK--KRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N VMTD+G +EVQG+AE A F AML LA+ + +L +LQ+ ++ Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238 >gi|62182227|ref|YP_218644.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75479865|sp|Q57I99|RNPH_SALCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|62129860|gb|AAX67563.1| RNase PH [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716715|gb|EFZ08286.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 238 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238 >gi|325579215|ref|ZP_08149171.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325159450|gb|EGC71584.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 238 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 119/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q R I +TR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T Sbjct: 1 MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + +N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IANGTLKTNPIKGLVAAISVGIVEGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + +L LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREAL 236 >gi|52424307|ref|YP_087444.1| ribonuclease PH [Mannheimia succiniciproducens MBEL55E] gi|61215869|sp|Q65W01|RNPH_MANSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|52306359|gb|AAU36859.1| Rph protein [Mannheimia succiniciproducens MBEL55E] Length = 240 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 119/224 (53%), Positives = 159/224 (70%), Gaps = 2/224 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R N+ R I +TR +K+AEGS LV+FGDT ++ TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRAVNEPRPIKITRHYTKHAEGSVLVEFGDTKVICTATVEDSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR++VDL+ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMLREAAKGKQGGRTMEIQRLIARSLRAMVDLTALGERSITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALTDAINAL--VENGTLKTSPLKGLVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS + D N VM + G ++EVQG+AE FS + +LNLAK Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAK 222 >gi|197117592|ref|YP_002138019.1| ribonuclease PH [Geobacter bemidjiensis Bem] gi|197086952|gb|ACH38223.1| ribonuclease PH [Geobacter bemidjiensis Bem] Length = 239 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 167/239 (69%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N +RE+ +TR K+AEGS LV+FGDT ++ AT+E +VP +++ GW+T Sbjct: 2 IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I+IDCDVIQ Sbjct: 62 AEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VAL D LQ++ N +L + L+ VAA+S G++ G P +DLDY Sbjct: 122 ADGGTRTASITGAYVALADALQNL---VNAGELEKSPLREAVAAVSVGIVDGVPFLDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST +VD NFVMT S VEVQG+AE F+ D AM A ++ L ++Q++ + Sbjct: 179 PEDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRRHAMLGLSRLFEIQQEAL 237 >gi|78049070|ref|YP_365245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927895|ref|ZP_08189119.1| RNAse PH [Xanthomonas perforans 91-118] gi|123584287|sp|Q3BPR8|RNPH_XANC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|78037500|emb|CAJ25245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541735|gb|EGD13253.1| RNAse PH [Xanthomonas perforans 91-118] Length = 241 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLIKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241 >gi|237745873|ref|ZP_04576353.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS] gi|229377224|gb|EEO27315.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS] Length = 248 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 162/240 (67%), Gaps = 6/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR + MR I R +KYAEGS L FGDT ++ TA++EE VP ++R GW+T Sbjct: 9 IRSNGRPLDAMRSIEFIRNYTKYAEGSVLTVFGDTQVICTASIEESVPPFLRGRGRGWLT 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA GRQ GR+QEIQR+IGR++R+ DL+A G R + +DCDVIQ Sbjct: 69 AEYGMLPRSTHTRMEREAARGRQSGRTQEIQRLIGRSIRAAFDLNAFGERTLRLDCDVIQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTA+I+G +A +D M E K L+ VAAIS G++ G P++DLD Sbjct: 129 ADGGTRTASISGVMIAAYDAFSLMVEEGLIEKVP----LRHFVAAISVGVIQGVPMLDLD 184 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS+ D D N VMT++G VE+QG+AE FS ML +A+ I +LI +QK V+ Sbjct: 185 YQEDSSCDTDMNVVMTEAGDFVEIQGTAEGGAFSHSLLNEMLGMAQQGIGELIHMQKRVL 244 >gi|70733342|ref|YP_263117.1| ribonuclease PH [Pseudomonas fluorescens Pf-5] gi|123652029|sp|Q4K3R6|RNPH_PSEF5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|68347641|gb|AAY95247.1| ribonuclease PH [Pseudomonas fluorescens Pf-5] Length = 240 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQQGMNEIFQLQQAALAD 240 >gi|158319608|ref|YP_001512115.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs] gi|158139807|gb|ABW18119.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs] Length = 247 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 120/237 (50%), Positives = 167/237 (70%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R + TR ++YA+GS LV+ G+T ++ TAT+E+KVP +++NT GWITA Sbjct: 3 RIDGRKNNELRPVKFTRNFTRYAQGSVLVEMGETKVICTATIEDKVPPFLKNTGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST +R RE+ G+ GR+QEIQR+IGRALRSVVDL ALG R + IDCDVIQA Sbjct: 63 EYSMLPSSTQSRKVRESSRGKVEGRTQEIQRLIGRALRSVVDLDALGERTLWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG++VAL D L +++ + ++ V+AIS G++ G ++DL Y E Sbjct: 123 DGGTRTASITGSFVALVDALNKLKEEGAIESIP--VRSFVSAISVGIINGEAMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DST VD N VMTD G VEVQG+ E + F++ +L L + +LI+LQK+ + Sbjct: 181 DSTAKVDMNIVMTDRGEFVEVQGTGEESPFAKADLMNLLELGEKGNLELIQLQKEAL 237 >gi|300741332|ref|ZP_07071353.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567] gi|300380517|gb|EFJ77079.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567] Length = 245 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/237 (49%), Positives = 164/237 (69%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R I++TR S AEGS LV+FGDT +L TA+ E VP W++ GW+TA Sbjct: 6 RADGRTLNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+TG R RE+V G+ GGR+ EI R+IGR+LR+++D++ALG I++DCDV+QA Sbjct: 66 EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAIIDMNALGENTIVLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + + LK V+AIS G++ G P++DL Y E Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSDKPLKDSVSAISVGIIDGTPMLDLPYTE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V+T SG VEVQG+AE A F +D A+L+LA + A+L ++Q++ + Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELARIQRESL 242 >gi|118580726|ref|YP_901976.1| ribonuclease PH [Pelobacter propionicus DSM 2379] gi|118503436|gb|ABK99918.1| RNAse PH [Pelobacter propionicus DSM 2379] Length = 239 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 169/239 (70%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR +R +++TR +KYAEG+ LV+FGDT ++ TA++EE VP ++R GW+T Sbjct: 2 VRKNGRDSRALRPVAITRNFTKYAEGAVLVEFGDTRVICTASVEESVPSFLRGRGTGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+Q GR+ EIQR+IGR+LR+V DL+ALG R + +DCDV+Q Sbjct: 62 AEYSMLPRATHTRSSREASKGKQSGRTLEIQRLIGRSLRAVTDLAALGERSVYLDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VAL D L ++ + L ++ L+ VAA+S G++ G ++DLDY Sbjct: 122 ADGGTRTASITGAYVALADALATLK---QRGLLERIPLREAVAAVSVGIVGGESLLDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ +VD NFVMT S VEVQG+AE F+ + AM +LA D I L LQ++ + Sbjct: 179 DEDSSAEVDMNFVMTSSQRFVEVQGTAEVEPFTLEQMDAMRSLAMDGIQCLFDLQREAL 237 >gi|260906180|ref|ZP_05914502.1| ribonuclease PH [Brevibacterium linens BL2] Length = 240 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 160/239 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +++RE+++TR AEGS LV+FG+T +L A+L VP W++ GW+T Sbjct: 1 MRADGRNADELREVTITRNWINTAEGSALVEFGNTRVLVAASLTAGVPRWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR+LR+V+DL LG +++DCDV+Q Sbjct: 61 AEYAMLPRATDSRNTRESVKGKLGGRTHEISRLIGRSLRAVIDLDKLGENTLVLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + +K +AAIS G++ G P++DL Y Sbjct: 121 ADGGTRTASITGAYVALADAIDKGRSTGIIPAANNPIKDSIAAISVGIIDGEPVLDLPYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG VEVQG+AE A F +D +L+LA ADL +Q +V+S Sbjct: 181 EDSRADTDMNVVMTGSGQFVEVQGTAEGAPFDRDELGTLLDLAAKGCADLTGIQSEVLS 239 >gi|301155568|emb|CBW15036.1| ribonuclease PH (pseudogene) [Haemophilus parainfluenzae T3T1] Length = 238 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 118/238 (49%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q R I +TR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T Sbjct: 1 MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + +N + +KG +AAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IANGTLKTNPIKGLIAAISVGIVEGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + +L LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREAL 236 >gi|148653988|ref|YP_001281081.1| ribonuclease PH [Psychrobacter sp. PRwf-1] gi|172048586|sp|A5WHJ0|RNPH_PSYWF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|148573072|gb|ABQ95131.1| RNAse PH [Psychrobacter sp. PRwf-1] Length = 238 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 119/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ +Q+R ++ R +K+AEGS LV FGDT +L TA++E VP W++ GW+T Sbjct: 1 MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASVEAGVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR++VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLTKLGENTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +AL D L+ ++ K + L G VAA+S G+ G ++DL+Y Sbjct: 121 ADGGTRTASITGAAIALIDALEVLQ--QKKKLKADPLIGLVAAVSVGVKNGEVLLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ D D N VMT G +E+QG+AE F++ ML +A+ IADL+KLQ+ + Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLVKLQQTAL 236 >gi|259906754|ref|YP_002647110.1| ribonuclease PH [Erwinia pyrifoliae Ep1/96] gi|224962376|emb|CAX53831.1| Ribonuclease PH (TRNA nucleotidyltransferase) [Erwinia pyrifoliae Ep1/96] gi|283476540|emb|CAY72368.1| ribonuclease PH [Erwinia pyrifoliae DSM 12163] gi|310765964|gb|ADP10914.1| ribonuclease PH [Erwinia sp. Ejp617] Length = 238 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L H+ K + + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNHLVSI-GKLK-ANPMKGMVAAISVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I L+ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTN 238 >gi|253701667|ref|YP_003022856.1| ribonuclease PH [Geobacter sp. M21] gi|251776517|gb|ACT19098.1| ribonuclease PH [Geobacter sp. M21] Length = 239 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 121/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N +RE+ +TR K+AEGS LV+FGDT ++ AT+E +VP +++ GW+T Sbjct: 2 IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I+IDCDVIQ Sbjct: 62 AEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D LQ++ + + L+ VAA+S G++ G P +DLDY Sbjct: 122 ADGGTRTASITGAYVALADALQNLVKAGDLEK--SPLREAVAAVSVGIVDGVPFLDLDYP 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST +VD NFVMT S VEVQG+AE F+ D AM + A ++ L ++Q++ + Sbjct: 180 EDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRSHAMLGLSRLFEIQQEAL 237 >gi|113971932|ref|YP_735725.1| ribonuclease PH [Shewanella sp. MR-4] gi|114045862|ref|YP_736412.1| ribonuclease PH [Shewanella sp. MR-7] gi|117922209|ref|YP_871401.1| ribonuclease PH [Shewanella sp. ANA-3] gi|123131815|sp|Q0HZV0|RNPH_SHESR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123324577|sp|Q0HE49|RNPH_SHESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228320|sp|A0L1S6|RNPH_SHESA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|113886616|gb|ABI40668.1| RNAse PH [Shewanella sp. MR-4] gi|113887304|gb|ABI41355.1| RNAse PH [Shewanella sp. MR-7] gi|117614541|gb|ABK49995.1| RNAse PH [Shewanella sp. ANA-3] Length = 237 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + +L LAK+ I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELIELLGLAKNSIREIVDVQKAALN 237 >gi|310817156|ref|YP_003965120.1| ribonuclease PH [Ketogulonicigenium vulgare Y25] gi|308755891|gb|ADO43820.1| ribonuclease PH [Ketogulonicigenium vulgare Y25] Length = 235 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 123/223 (55%), Positives = 163/223 (73%), Gaps = 4/223 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ ++MR++++ VS++AEGSCL+K GDTH+L TA+L+ +VP +++N+ GW+T Sbjct: 1 MRPSGRKPDEMRKVTIETGVSRHAEGSCLIKMGDTHVLCTASLDARVPPFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R+KREA G Q GR+QEIQR++GRALR+ VD ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATHSRMKREAKDG-QSGRTQEIQRLVGRALRAGVDRVALGERQITIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITG WVAL + + +S L V+AISCG+ G ++DLDY Sbjct: 120 ADGGTRCAAITGGWVALRLAVNKL--LKAGVIISDPLSAPVSAISCGIYAGQALLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 EDS VD NF+MT + +VE+Q SAE ATFS+ +L+LA Sbjct: 178 EDSEAGVDGNFIMT-ADRLVEIQMSAEGATFSRAQMDTLLDLA 219 >gi|83945049|ref|ZP_00957415.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633] gi|83851831|gb|EAP89686.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633] Length = 238 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 114/234 (48%), Positives = 162/234 (69%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ + +R +S S YAEGSCL+ FG+T +L TA++E+ VP W+R GW+T Sbjct: 1 MRPEGRQPDALRPLSFEMGWSPYAEGSCLISFGNTKVLCTASVEDNVPPWLRGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+ VDL ALG RQI++DCDV+Q Sbjct: 61 GEYSMLPRATHQRTRREVQSGKPSGRTQEIQRLIGRSLRAAVDLKALGERQIVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAW+AL + ++ + + + V+ +AA+S G++ G ++DL+Y Sbjct: 121 ADGGTRTAAITGAWLALKAAVAYLME-EDVLKADPVI-AQIAAVSAGVVNGDCVLDLEYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ED + DANFV+T +G ++EVQ +AE A +Q+ F + LA+ ++DL Q Sbjct: 179 EDRVAETDANFVLTSTGGVIEVQATAEDAPMTQEQFDQIFALARKGVSDLCAAQ 232 >gi|56461525|ref|YP_156806.1| RNase PH [Idiomarina loihiensis L2TR] gi|61215805|sp|Q5QYL5|RNPH_IDILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56180535|gb|AAV83257.1| RNase PH [Idiomarina loihiensis L2TR] Length = 237 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R +++TR +K+AEGS L++FG+T +L A++E VP +++ GW+T Sbjct: 1 MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGETKVLCNASVERGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+IGR+LR+ +D+SALG I IDCDVIQ Sbjct: 61 AEYSMLPRATHTRSAREASRGKQGGRTLEIQRLIGRSLRTCIDMSALGEHTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M + LK VAAIS G+L G P+ DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNWMR--AQGMVKVNPLKEMVAAISVGILDGEPVSDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT++G +E+QG+AE FS D +++ +A+ I +LI +QK ++ Sbjct: 179 EDSKADTDMNIVMTEAGKFIEIQGTAEGEAFSFDEMNSLVEMARHSIRELIDIQKQALA 237 >gi|153006268|ref|YP_001380593.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5] gi|166228263|sp|A7HFW3|RNPH_ANADF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|152029841|gb|ABS27609.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5] Length = 238 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 126/238 (52%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +R + L VSK+AEGSCL +FGDTH+L TA+++EKVP + T GW+T Sbjct: 1 MRTNGRGPRDLRNVVLEPGVSKHAEGSCLARFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+QGGR+ EIQR+IGRALR+ VDL ALG+R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHERMAREAARGKQGGRTLEIQRLIGRALRAAVDLRALGTRTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VAL L+ ++ K L VAA+S G++ G VDLDYG Sbjct: 121 ADGGTRTAAITGGYVALALALRGLQ--QRKTLSRNPLARSVAAVSVGLVEGEVCVDLDYG 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST +VD N V T G +VEVQG+AE F + M++ A + I L + Q+ + Sbjct: 179 EDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRSDLDRMVDAALEAIGRLKERQEQAL 236 >gi|91791686|ref|YP_561337.1| ribonuclease PH [Shewanella denitrificans OS217] gi|123357198|sp|Q12SG2|RNPH_SHEDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91713688|gb|ABE53614.1| RNAse PH [Shewanella denitrificans OS217] Length = 237 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSKRTPAQTRPITITRNFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VA+ D L + S LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTAAITGACVAMVDALNWAR--AKNIIKSNPLKFLIAAVSVGIYKGEAISDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+EVQG+AE FS + +L LAK+ I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEVQGTAEGEPFSHEELNELLGLAKNSIREIVDVQKSALN 237 >gi|288933001|ref|YP_003437060.1| ribonuclease PH [Klebsiella variicola At-22] gi|288887730|gb|ADC56048.1| ribonuclease PH [Klebsiella variicola At-22] Length = 238 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + K + + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLA-AAGKLK-TNPMKGMVAAVSVGIVNGEAICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I +I QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 238 >gi|312963858|ref|ZP_07778329.1| ribonuclease PH [Pseudomonas fluorescens WH6] gi|311281893|gb|EFQ60503.1| ribonuclease PH [Pseudomonas fluorescens WH6] Length = 240 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F AML LA+ + ++ LQ +++ Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQKGMTEIFALQNAALAD 240 >gi|95113322|emb|CAK18050.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Pseudomonas entomophila L48] Length = 253 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 16 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 76 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 136 DGGTRTASITGAMVALCDALAVIKK-RGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 194 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 195 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 253 >gi|332532804|ref|ZP_08408678.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505] gi|332037831|gb|EGI74281.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505] Length = 237 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GWI Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L HM + S LK +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N ++T++G I+E+QG+AE FS D +L LAK I ++I +QK ++ Sbjct: 179 EDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237 >gi|302336447|ref|YP_003801654.1| RNAse PH [Olsenella uli DSM 7084] gi|301320287|gb|ADK68774.1| RNAse PH [Olsenella uli DSM 7084] Length = 267 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 128/236 (54%), Positives = 160/236 (67%), Gaps = 4/236 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR LTR + K A+GSCL +FGDT ++ TAT+EE VP W + ++ GW++A Sbjct: 31 RSYGRAADQMRPAKLTRDIMKNADGSCLAEFGDTRVICTATVEEGVPAWRKGSRAGWVSA 90 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R +RE GR+G RS EI+R+IGR+LR+VVDL LG +I DCDVIQA Sbjct: 91 EYAMLPASTSTRSRRE-YKGRKG-RSMEIERLIGRSLRAVVDLHRLGELTVICDCDVIQA 148 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVALHD L D +L L G VAAIS GM+ G ++DLDY E Sbjct: 149 DGGTRTASITGAWVALHDALMASVDAGRLARLP--LTGQVAAISMGMVDGSLLLDLDYPE 206 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DS VD N V TD+G IVEVQG+ ER+T + A+L+L + I L+ LQ V Sbjct: 207 DSHAQVDMNLVGTDAGGIVEVQGTGERSTIDRAQLNALLDLGQVGIGRLVALQNQV 262 >gi|145628603|ref|ZP_01784403.1| ribonuclease PH [Haemophilus influenzae 22.1-21] gi|144979073|gb|EDJ88759.1| ribonuclease PH [Haemophilus influenzae 22.1-21] Length = 238 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 119/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+A FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAGSEPFSHEELLTLLDLAKQGCNQIFIAQREAL 236 >gi|162139697|ref|YP_610833.2| ribonuclease PH [Pseudomonas entomophila L48] Length = 240 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALCDALAVIKK-RGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 240 >gi|148359584|ref|YP_001250791.1| ribonuclease PH [Legionella pneumophila str. Corby] gi|296107626|ref|YP_003619327.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy] gi|166228288|sp|A5IDJ5|RNPH_LEGPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|148281357|gb|ABQ55445.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Legionella pneumophila str. Corby] gi|295649528|gb|ADG25375.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy] Length = 235 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 117/236 (49%), Positives = 165/236 (69%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R +++TR + YAEGS LV+FG T ++ A++ E VP +++ GWIT Sbjct: 1 MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASIVEGVPRFLKGKNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+IGR+LR+ +DL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+ VA+ D + M K + V +VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGSCVAMRDAIHWMVQ-REKIKKMPVFN-YVAAVSVGIYRGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ED + D N VM + GH +EVQG+AE +F+++ +ML+LA+ I LI++QK+ Sbjct: 179 EDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQKN 234 >gi|147677126|ref|YP_001211341.1| ribonuclease PH [Pelotomaculum thermopropionicum SI] gi|146273223|dbj|BAF58972.1| RNase PH [Pelotomaculum thermopropionicum SI] Length = 257 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 125/236 (52%), Positives = 169/236 (71%), Gaps = 4/236 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R + +TR K+AEGS L++ GDT ++ TAT+E+KVP++++ GWITA Sbjct: 3 RIDGRKPDQLRPVRITRNYIKHAEGSVLIEIGDTRVICTATVEDKVPLFLKGEGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R REA G+ GGR+ EIQR+IGR+LRSVVDL+ALG R + +DCDVIQA Sbjct: 63 EYGMLPRSTGVRTPREAARGKIGGRTCEIQRLIGRSLRSVVDLAALGERTVWLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTA+ITGA+VAL D L +++ + Q+ ++ + VAA S G L G +DL Y Sbjct: 123 DGGTRTASITGAFVALVDALNRLKE---QGQIDRIPVSDFVAATSVGRLNGRIYLDLCYE 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS +VD N VMT SG VEVQG+ E A+F++ +M+ LA I+ LI QK+ Sbjct: 180 EDSAAEVDMNIVMTGSGRFVEVQGTGEEASFTRQEMDSMIELAAQGISRLILHQKE 235 >gi|326387915|ref|ZP_08209521.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370] gi|326207961|gb|EGD58772.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370] Length = 238 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 116/214 (54%), Positives = 155/214 (72%), Gaps = 2/214 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR I++ +K+AEGS L+ FGDT ++ TA++EE+VP ++R GW+T Sbjct: 1 MRASGRAADEMRAITIETHFTKHAEGSVLIGFGDTKVIVTASVEERVPPFLRGKGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG RQI +DCDVIQ Sbjct: 61 AEYSMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GAW+AL + + S + + L VAAISCG++ G P++DLDY Sbjct: 121 ADGGTRTASISGAWIALRLAVDKLM-ASGQIK-EDPLPRKVAAISCGIVDGTPVLDLDYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 EDST D DANFV+ + G I EVQ +AE AT+ ++ Sbjct: 179 EDSTADADANFVLIEGGQIAEVQATAEGATYDEE 212 >gi|258616327|ref|ZP_05714097.1| ribonuclease PH/Ham1 protein [Enterococcus faecium DO] Length = 253 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|77361698|ref|YP_341273.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas haloplanktis TAC125] gi|123588968|sp|Q3IJI0|RNPH_PSEHT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|76876609|emb|CAI87831.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas haloplanktis TAC125] Length = 237 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GWI Sbjct: 1 MRPSERTANQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L HM + S LK +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKYMIAAISVGIYKGQAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N ++T++G I+E+QG+AE FS D +L LAK I ++I +QK ++ Sbjct: 179 EDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237 >gi|311113412|ref|YP_003984634.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931] gi|310944906|gb|ADP41200.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931] Length = 245 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 117/237 (49%), Positives = 165/237 (69%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R I++TR S AEGS LV+FGDT +L TA+ E VP W++ GW+TA Sbjct: 6 RADGRALNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+TG R RE+V G+ GGR+ EI R+IGR+LR+V+D++ALG I++DCDV+QA Sbjct: 66 EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMNALGENTIVLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + ++ LK V+AIS G++ G P++DL Y E Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSAKPLKDSVSAISVGIIDGTPMLDLPYTE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V+T SG VEVQG+AE A F ++ A+L+LA + A+L ++Q++ + Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNELNALLDLALEGTAELARIQRESL 242 >gi|320655608|gb|EFX23536.1| ribonuclease PH [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 236 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG--QGWIT 58 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 59 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 118 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + N + +KG VAA+S G++ G + DL+Y Sbjct: 119 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 177 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 236 >gi|315292912|gb|EFU52264.1| ribonuclease PH [Escherichia coli MS 153-1] Length = 214 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 119/216 (55%), Positives = 153/216 (70%), Gaps = 2/216 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216 EDS + D N VMT+ G I+EVQG+AE F+ + Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214 >gi|85711491|ref|ZP_01042549.1| RNase PH [Idiomarina baltica OS145] gi|85694643|gb|EAQ32583.1| RNase PH [Idiomarina baltica OS145] Length = 237 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R +++TR +K+AEGS L++FGDT +L AT+E VP +++ GW+T Sbjct: 1 MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGDTKVLCNATVEAGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R +REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q Sbjct: 61 AEYSMLPRSTHTRSQREAARGKQGGRTMEIQRLIARSLRACIDLKALGENTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L +M ++K LK VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNYMR--ASKMVKVNPLKEMVAAISVGIVDGDAVSDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G +E+QG+AE FS D +++++A+ I +LI +QK ++ Sbjct: 179 EDSQAETDMNVVMTEAGKFIEIQGTAEGEAFSYDEMQSLVDIARVSIKELIDIQKAALA 237 >gi|293554040|ref|ZP_06674640.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039] gi|291601822|gb|EFF32074.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039] Length = 451 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|69246345|ref|ZP_00603901.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO] gi|68195298|gb|EAN09749.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO] Length = 451 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|260582842|ref|ZP_05850627.1| ribonuclease PH [Haemophilus influenzae NT127] gi|260094055|gb|EEW77958.1| ribonuclease PH [Haemophilus influenzae NT127] Length = 238 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 119/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINSL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLILLDLAKQGCNQIFIAQREAL 236 >gi|313501268|gb|ADR62634.1| Rph [Pseudomonas putida BIRD-1] Length = 240 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALCDALAVIKK-RGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ I ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGINEIFELQQAALAD 240 >gi|319775856|ref|YP_004138344.1| ribonuclease PH [Haemophilus influenzae F3047] gi|329123701|ref|ZP_08252261.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] gi|317450447|emb|CBY86663.1| ribonuclease PH [Haemophilus influenzae F3047] gi|327469900|gb|EGF15365.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] Length = 238 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 119/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREAL 236 >gi|170719366|ref|YP_001747054.1| ribonuclease PH [Pseudomonas putida W619] gi|226736926|sp|B1J4L4|RNPH_PSEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|169757369|gb|ACA70685.1| ribonuclease PH [Pseudomonas putida W619] Length = 240 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDALAVIKK-RGGLKAGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQVALAD 240 >gi|293390938|ref|ZP_06635272.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951472|gb|EFE01591.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1] Length = 238 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R I +TR +K+AEGS LV+FGDT +L TA++EE VP +++ GW+T Sbjct: 1 MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N LKG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALCDALNSL--VTNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDMIFQTQRATLA 237 >gi|227551340|ref|ZP_03981389.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330] gi|257887545|ref|ZP_05667198.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733] gi|257896040|ref|ZP_05675693.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12] gi|257898668|ref|ZP_05678321.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15] gi|293378788|ref|ZP_06624945.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1] gi|227179551|gb|EEI60523.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330] gi|257823599|gb|EEV50531.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733] gi|257832605|gb|EEV59026.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12] gi|257836580|gb|EEV61654.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15] gi|292642581|gb|EFF60734.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1] Length = 451 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+V+DL LG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|325272059|ref|ZP_08138496.1| ribonuclease PH [Pseudomonas sp. TJI-51] gi|324102805|gb|EGC00215.1| ribonuclease PH [Pseudomonas sp. TJI-51] Length = 240 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALCDALAVIKK-RGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMTEIFELQQAALAD 240 >gi|261867317|ref|YP_003255239.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412649|gb|ACX82020.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1] Length = 238 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R I +TR +K+AEGS LV+FGDT +L TA++EE VP +++ GW+T Sbjct: 1 MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N LKG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALCDALNSL--VTNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGKPFSHEELLTLLDLAKQGCDMIFQTQRATLA 237 >gi|167626670|ref|YP_001677170.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189043763|sp|B0U040|RNPH_FRAP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|167596671|gb|ABZ86669.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 235 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 115/232 (49%), Positives = 161/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT +L TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+ +G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D + +M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTSPLMSQVAAISVGIFNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM +G ++E+QG+AE FS++ F ML LAK I ++ + Sbjct: 181 EDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232 >gi|15838106|ref|NP_298794.1| ribonuclease PH [Xylella fastidiosa 9a5c] gi|21759420|sp|Q9PD74|RNPH_XYLFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|9106537|gb|AAF84314.1|AE003980_6 ribonuclease PH [Xylella fastidiosa 9a5c] Length = 241 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 168/239 (70%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ + +R + + R + +AEGS LV FG+T ++ TA++E KVP+++RN GW+TA Sbjct: 5 RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R +REA G+Q GR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VAL D ++ +E + QL + L G VAA+S G+ G P++DLDY Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLE---QRGQLKKSPLIGAVAAVSVGIYRGMPVLDLDYP 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VM D G ++E+QG+AE+ F + +L LA+ A L +Q++ ++ Sbjct: 182 EDSDCDTDMNVVMNDEGGVIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREALA 240 >gi|145631050|ref|ZP_01786825.1| ribonuclease PH [Haemophilus influenzae R3021] gi|144983335|gb|EDJ90817.1| ribonuclease PH [Haemophilus influenzae R3021] Length = 238 Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 118/224 (52%), Positives = 160/224 (71%), Gaps = 2/224 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS + D N VM + G ++EVQG+AE FS + +L+LAK Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAK 222 >gi|221135142|ref|ZP_03561445.1| RNase PH (tRNA nucleotidyltransferase) [Glaciecola sp. HTCC2999] Length = 238 Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R +++TR + +AEGS LV+FG+T ++ AT+EE VP +++ GWIT Sbjct: 1 MRPSGRTANQIRPVTITRHFTCHAEGSVLVEFGNTKVICNATVEEGVPRFMKGKGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYSMLPRATHSRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L HM S + LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTHMR--SKGILKANPLKHMIAALSVGVYKGNAIADLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT++G ++EVQG+AE FS + ML+LAK + +L +QK ++N Sbjct: 179 EDSDAETDMNVVMTETGKLIEVQGTAEGEPFSFEEMSEMLDLAKHGLRELFDIQKTALNN 238 >gi|310657898|ref|YP_003935619.1| nucleoside-triphosphatase [Clostridium sticklandii DSM 519] gi|308824676|emb|CBH20714.1| Nucleoside-triphosphatase [Clostridium sticklandii] Length = 443 Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 167/239 (69%), Gaps = 6/239 (2%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 ++ N +REI +T+ +KYAEGS L++FGDT +L A++EEKVP +++NT GWI+AEY M Sbjct: 3 KESNMLREIKITKNFTKYAEGSVLIEFGDTVVLCNASIEEKVPPFLKNTGTGWISAEYSM 62 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPRST R R++ G+ GR+ EIQR+IGRALRSVVD+ LG R I IDCDV+QADGGT Sbjct: 63 LPRSTHQRKIRDSARGKIDGRTHEIQRLIGRALRSVVDMKVLGERTIWIDCDVLQADGGT 122 Query: 126 RTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 RTA+ITGA+VAL D + + ++ F ++ V+A+S G++ G P++DL Y EDS Sbjct: 123 RTASITGAFVALCDAMAKLYEKEAIKSFPIN----AFVSAVSVGIVKGKPVLDLCYEEDS 178 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 + +VD N VMTD G +EVQG+ E+ FS++ +L+LA+ L+K+Q+ I + Sbjct: 179 SAEVDMNVVMTDKGEFIEVQGTGEQHPFSKNQLMQLLDLAQQGNEQLMKIQRRAIGEPI 237 >gi|282849100|ref|ZP_06258485.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745] gi|282580804|gb|EFB86202.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745] Length = 251 Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 4/238 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + KF ++ AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKFPITN----FCAAISVGIGPDGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N V T SG++VEVQG+ E TF++D A+L+LA+ +L+ Q++V+ Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVL 234 >gi|166713272|ref|ZP_02244479.1| ribonuclease PH [Xanthomonas oryzae pv. oryzicola BLS256] Length = 241 Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 164/239 (68%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRT AITGA+VAL D + + + ++ + L G VAA+S G+ G P++DLDY Sbjct: 125 DGGTRTTAITGAYVALADAVNLL---LKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYP 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++ Sbjct: 182 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALA 240 >gi|52842229|ref|YP_096028.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294910|ref|YP_127325.1| ribonuclease PH [Legionella pneumophila str. Lens] gi|54297939|ref|YP_124308.1| ribonuclease PH [Legionella pneumophila str. Paris] gi|21759423|sp|Q9X528|RNPH_LEGPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215813|sp|Q5WV28|RNPH_LEGPL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215816|sp|Q5X3P0|RNPH_LEGPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215829|sp|Q5ZTZ6|RNPH_LEGPH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|4704704|gb|AAD28218.1|AF120720_1 ribonuclease PH [Legionella pneumophila 130b] gi|52629340|gb|AAU28081.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751724|emb|CAH13146.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Legionella pneumophila str. Paris] gi|53754742|emb|CAH16229.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Legionella pneumophila str. Lens] gi|307610737|emb|CBX00344.1| ribonuclease PH [Legionella pneumophila 130b] Length = 235 Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 117/240 (48%), Positives = 166/240 (69%), Gaps = 10/240 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R +++TR + YAEGS LV+FG T ++ A++ E VP +++ GWIT Sbjct: 1 MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASIVEGVPRFLKGKNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+IGR+LR+ +DL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK----GHVAAISCGMLCGYPIVD 176 ADGGTRTAAITG+ VA+ D + M Q ++ K +VAA+S G+ G P++D Sbjct: 121 ADGGTRTAAITGSCVAMRDAIHWM------VQREKIKKMPAFNYVAAVSVGIYRGQPVLD 174 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 LDY ED + D N VM + GH +EVQG+AE +F+++ +ML+LA+ I LI++QK+ Sbjct: 175 LDYAEDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQKN 234 >gi|77919626|ref|YP_357441.1| ribonuclease PH [Pelobacter carbinolicus DSM 2380] gi|77545709|gb|ABA89271.1| RNAse PH [Pelobacter carbinolicus DSM 2380] Length = 244 Score = 241 bits (614), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 124/234 (52%), Positives = 161/234 (68%), Gaps = 4/234 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R I +R ++YAEGS LV FG+T +L AT+EE VP ++R GWITA Sbjct: 8 RADGRTPSELRPIYFSRGFTRYAEGSVLVSFGETRVLCNATVEEGVPSFLRGQGQGWITA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R REA G+ GGR+ EIQR+IGR+LR++ DL LG R I+IDCDV+QA Sbjct: 68 EYSMLPRATQVRSAREATRGKVGGRTSEIQRLIGRSLRAICDLEMLGERTILIDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VALHD + + + QLS L+ V+A+S G++ G+P++DLDY Sbjct: 128 DGGTRTAAITGAYVALHDAVYGL---VRENQLSDSPLRDSVSAVSVGLVDGHPLLDLDYA 184 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ED VD NFV+T SGH VEVQG+AE FS + + NLA DL +LQ Sbjct: 185 EDFRAAVDMNFVITGSGHFVEVQGTAEERPFSMEELDDLRNLALAGCRDLHRLQ 238 >gi|148260661|ref|YP_001234788.1| ribonuclease PH [Acidiphilium cryptum JF-5] gi|146402342|gb|ABQ30869.1| RNAse PH [Acidiphilium cryptum JF-5] Length = 243 Score = 241 bits (614), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 116/230 (50%), Positives = 159/230 (69%), Gaps = 2/230 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R++ + S++AEGS L++ G T +L A++E +VP ++R GW+TA Sbjct: 6 RPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD +ALG I +DCDV+ A Sbjct: 66 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR AAITGAWVAL ++ + + + L G VAA+SCG+ G P++DLDY E Sbjct: 126 DGGTRCAAITGAWVALALAIRTLRKAN--VIATDPLIGQVAAVSCGVFGGVPVLDLDYAE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 DS + DANFV+T +G IVE+Q +AERATF + F +L LA+ A+L Sbjct: 184 DSNAEADANFVLTGTGGIVEIQATAERATFEEATFGTLLGLARKGTAELF 233 >gi|145297207|ref|YP_001140048.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449] gi|142849979|gb|ABO88300.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449] Length = 240 Score = 241 bits (614), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R Q+R +++TR +K+AEGS LV+FG+T +L TA+++ VP +++ GW+TA Sbjct: 3 RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKGQGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST +R+ REA +G+Q GR+ EI R+I R+LR+ VDL+ALG I +DCDV+QA Sbjct: 63 EYGMLPRSTHSRMNREAAAGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTA+ITGA VAL D L M + K + Q LK +AA+S GM G I DL+Y Sbjct: 123 DGGTRTASITGACVALVDALNWMVE---KGMIKQSPLKQMIAAVSVGMYQGEAICDLEYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT+ G I+EVQG+AE F+ + AML LAK I ++I LQK +S Sbjct: 180 EDSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLAMLGLAKGGIEEIIALQKQSLS 238 >gi|152972490|ref|YP_001337636.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206579777|ref|YP_002235994.1| ribonuclease PH [Klebsiella pneumoniae 342] gi|238897086|ref|YP_002921832.1| ribonuclease PH [Klebsiella pneumoniae NTUH-K2044] gi|290511794|ref|ZP_06551162.1| ribonuclease PH [Klebsiella sp. 1_1_55] gi|166228287|sp|A6TFN5|RNPH_KLEP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736914|sp|B5XTF9|RNPH_KLEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|150957339|gb|ABR79369.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568835|gb|ACI10611.1| ribonuclease PH [Klebsiella pneumoniae 342] gi|238549414|dbj|BAH65765.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|289775584|gb|EFD83584.1| ribonuclease PH [Klebsiella sp. 1_1_55] Length = 238 Score = 241 bits (614), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + K + + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLV-AAGKLK-TNPMKGMVAAVSVGIVNGEAICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I +I QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 238 >gi|296114411|ref|ZP_06833065.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769] gi|295979172|gb|EFG85896.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769] Length = 242 Score = 241 bits (614), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 117/242 (48%), Positives = 164/242 (67%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R +S+ +++AEGS L++ G T +L A++E +VP ++R GW+T Sbjct: 1 MRPSGRAIDALRPVSIQTGFARHAEGSALIRMGGTEVLCAASIESRVPPFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I RALR+ +DL ALG I +DCDV+ Sbjct: 61 AEYGMLPRATHSRGPREAAKGKQGGRTHEIQRLIARALRAGIDLRALGEISITVDCDVLN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITGAWVAL L + + L + VAA+SCG+ ++DLDY Sbjct: 121 ADGGTRCAAITGAWVALRLALDGLVRANVIPALP--ITAQVAAVSCGLTGAGAVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DANFV+T++G IVE+QG+AE+A FSQ+ F ++ LA+ A L ++Q+D ++ Sbjct: 179 EDSNAVADANFVLTETGGIVEIQGTAEQAPFSQEQFNELMRLAQVGTAQLFEIQRDAVAQ 238 Query: 241 EV 242 V Sbjct: 239 AV 240 >gi|289662153|ref|ZP_06483734.1| ribonuclease PH [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 240 Score = 241 bits (614), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM D G +E+QG+AE F +D A+L LA+ + L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQRAALA 240 >gi|257878167|ref|ZP_05657820.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933] gi|257881049|ref|ZP_05660702.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502] gi|257889634|ref|ZP_05669287.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410] gi|257892426|ref|ZP_05672079.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408] gi|260559214|ref|ZP_05831400.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68] gi|261207747|ref|ZP_05922432.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6] gi|289565822|ref|ZP_06446264.1| ribonuclease PH [Enterococcus faecium D344SRF] gi|293563126|ref|ZP_06677591.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162] gi|294614004|ref|ZP_06693934.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636] gi|294617101|ref|ZP_06696767.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679] gi|294623312|ref|ZP_06702174.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317] gi|314939893|ref|ZP_07847099.1| ribonuclease PH [Enterococcus faecium TX0133a04] gi|314943740|ref|ZP_07850479.1| ribonuclease PH [Enterococcus faecium TX0133C] gi|314949696|ref|ZP_07853014.1| ribonuclease PH [Enterococcus faecium TX0082] gi|314953242|ref|ZP_07856181.1| ribonuclease PH [Enterococcus faecium TX0133A] gi|314993678|ref|ZP_07859026.1| ribonuclease PH [Enterococcus faecium TX0133B] gi|314997405|ref|ZP_07862356.1| ribonuclease PH [Enterococcus faecium TX0133a01] gi|257812395|gb|EEV41153.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933] gi|257816707|gb|EEV44035.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502] gi|257825994|gb|EEV52620.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410] gi|257828805|gb|EEV55412.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408] gi|260074971|gb|EEW63287.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68] gi|260078130|gb|EEW65836.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6] gi|289162365|gb|EFD10223.1| ribonuclease PH [Enterococcus faecium D344SRF] gi|291593111|gb|EFF24690.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636] gi|291596638|gb|EFF27865.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679] gi|291597280|gb|EFF28469.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317] gi|291604904|gb|EFF34373.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162] gi|313588540|gb|EFR67385.1| ribonuclease PH [Enterococcus faecium TX0133a01] gi|313591852|gb|EFR70697.1| ribonuclease PH [Enterococcus faecium TX0133B] gi|313594708|gb|EFR73553.1| ribonuclease PH [Enterococcus faecium TX0133A] gi|313597603|gb|EFR76448.1| ribonuclease PH [Enterococcus faecium TX0133C] gi|313640856|gb|EFS05436.1| ribonuclease PH [Enterococcus faecium TX0133a04] gi|313643954|gb|EFS08534.1| ribonuclease PH [Enterococcus faecium TX0082] Length = 451 Score = 241 bits (614), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 122/242 (50%), Positives = 162/242 (66%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIENSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|293572585|ref|ZP_06683559.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980] gi|291607368|gb|EFF36716.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980] Length = 451 Score = 241 bits (614), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+V+DL LG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESNKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|148553491|ref|YP_001261073.1| ribonuclease PH [Sphingomonas wittichii RW1] gi|166228323|sp|A5V3R9|RNPH_SPHWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|148498681|gb|ABQ66935.1| RNAse PH [Sphingomonas wittichii RW1] Length = 238 Score = 241 bits (614), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 116/214 (54%), Positives = 154/214 (71%), Gaps = 2/214 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR IS+ + +AEGS L+ FGDT +L TA++EEKVP ++R GW+T Sbjct: 1 MRPSGRAPDQMRAISIETGFTVHAEGSVLISFGDTRVLVTASVEEKVPPFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD++ LG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMAKLGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G WVAL + + ++ + VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGGWVALRLAVDKL--LASGAIAEDPITAQVAAISCGIHEGTPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 EDS DANFV+ D+G+I E Q +AE AT+ ++ Sbjct: 179 EDSNAHADANFVLLDNGNIAEAQATAEGATYDEE 212 >gi|289668014|ref|ZP_06489089.1| ribonuclease PH [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 241 Score = 241 bits (614), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM D G +E+QG+AE F +D A+L LA+ + L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQRAALA 240 >gi|269797499|ref|YP_003311399.1| ribonuclease PH [Veillonella parvula DSM 2008] gi|269094128|gb|ACZ24119.1| ribonuclease PH [Veillonella parvula DSM 2008] Length = 251 Score = 241 bits (614), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 163/240 (67%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + KF ++ AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKFPITD----FCAAISVGIGPEGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N V T SG++VEVQG+ E TF++D A+L+LA+ +L+ Q++V+ + Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLGS 236 >gi|28198628|ref|NP_778942.1| ribonuclease PH [Xylella fastidiosa Temecula1] gi|71274728|ref|ZP_00651016.1| Ribonuclease PH [Xylella fastidiosa Dixon] gi|71899591|ref|ZP_00681746.1| Ribonuclease PH [Xylella fastidiosa Ann-1] gi|71900258|ref|ZP_00682395.1| Ribonuclease PH [Xylella fastidiosa Ann-1] gi|170730030|ref|YP_001775463.1| ribonuclease PH [Xylella fastidiosa M12] gi|182681311|ref|YP_001829471.1| ribonuclease PH [Xylella fastidiosa M23] gi|32129976|sp|Q87DG3|RNPH_XYLFT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736953|sp|B2IA38|RNPH_XYLF2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736954|sp|B0U6W7|RNPH_XYLFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|28056712|gb|AAO28591.1| ribonuclease PH [Xylella fastidiosa Temecula1] gi|71164460|gb|EAO14174.1| Ribonuclease PH [Xylella fastidiosa Dixon] gi|71729971|gb|EAO32065.1| Ribonuclease PH [Xylella fastidiosa Ann-1] gi|71730633|gb|EAO32709.1| Ribonuclease PH [Xylella fastidiosa Ann-1] gi|167964823|gb|ACA11833.1| tRNA nucleotidyltransferase [Xylella fastidiosa M12] gi|182631421|gb|ACB92197.1| ribonuclease PH [Xylella fastidiosa M23] gi|307579762|gb|ADN63731.1| ribonuclease PH [Xylella fastidiosa subsp. fastidiosa GB514] Length = 241 Score = 241 bits (614), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 167/239 (69%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ + +R + + R + +AEGS LV FG+T ++ TA++E KVP+++RN GWITA Sbjct: 5 RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWITA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R +REA G+Q GR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VAL D ++ +E + QL + L G VAA+S G+ G P++DLDY Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLE---QRGQLKKSPLIGAVAAVSVGIYRGMPVLDLDYP 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VM D G +E+QG+AE+ F + +L LA+ A L +Q++ ++ Sbjct: 182 EDSDCDTDMNVVMNDEGGFIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREALA 240 >gi|322383243|ref|ZP_08057054.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152512|gb|EFX45298.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 251 Score = 241 bits (614), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 169/239 (70%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ N++R + +T +K+AEGS L++ GDT ++ TAT+EE+VP +++N GW+T Sbjct: 1 MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATIEERVPPFLKNEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA G+ GGR+ EIQR+IGRALRSV++L ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATQVRNQREASKGKLGGRTMEIQRLIGRALRSVINLEALGERSITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRT +ITGA++A+ + MED K ++ + ++A++S G++ G ++DL Y Sbjct: 121 ADGGTRTTSITGAFIAMSLAIHKLMED--KKITVNPITD-YLASVSVGIVQGETLLDLMY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT GH VEVQG+ E + FS+D ML LA++ I LI+LQ++ + Sbjct: 178 TEDSQAHVDMNVVMTGRGHFVEVQGTGEESPFSKDDLDRMLGLAEEGILRLIELQREAL 236 >gi|262040695|ref|ZP_06013932.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329996940|ref|ZP_08302637.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3] gi|259041961|gb|EEW42995.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539230|gb|EGF65259.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3] Length = 251 Score = 241 bits (614), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT Sbjct: 14 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 74 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + K + + +KG VAA+S G++ G I DL+Y Sbjct: 134 ADGGTRTASITGACVALADALNKLV-AAGKLK-TNPMKGMVAAVSVGIVNGEAICDLEYI 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I +I QK + N Sbjct: 192 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 251 >gi|24375740|ref|NP_719783.1| ribonuclease PH [Shewanella oneidensis MR-1] gi|61216058|sp|Q8E9L4|RNPH_SHEON RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|24350681|gb|AAN57227.1|AE015858_8 ribonuclease PH [Shewanella oneidensis MR-1] Length = 237 Score = 241 bits (614), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE F+ + +L LAK+ I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQKAALN 237 >gi|157149261|ref|YP_001456580.1| ribonuclease PH [Citrobacter koseri ATCC BAA-895] gi|166228276|sp|A8ARN1|RNPH_CITK8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157086466|gb|ABV16144.1| hypothetical protein CKO_05101 [Citrobacter koseri ATCC BAA-895] Length = 238 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + +N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238 >gi|320539880|ref|ZP_08039539.1| defective ribonuclease PH [Serratia symbiotica str. Tucson] gi|320030066|gb|EFW12086.1| defective ribonuclease PH [Serratia symbiotica str. Tucson] Length = 238 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPVGRAPQHVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG II+DCDV+Q Sbjct: 61 AEYSMLPRSTHSRNVREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTIILDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N + +KG VAA+S G+L G + DL+Y Sbjct: 121 ADGGTRTASITGACVALIDALNAL--VANGKLKANPMKGLVAAVSVGILNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS D A+L LA+ I + + QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELMALLTLARGGIETIFQAQKAALA 237 >gi|241667227|ref|ZP_04754805.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875778|ref|ZP_05248488.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841799|gb|EET20213.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 235 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 115/232 (49%), Positives = 161/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT +L TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+ +G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D + +M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTNPLMSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM +G ++E+QG+AE FS++ F ML LAK I ++ + Sbjct: 181 EDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232 >gi|332995822|gb|AEF05877.1| ribonuclease PH [Alteromonas sp. SN2] Length = 237 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R +++TR+ + +AEGS LV+FG+T +L AT+EE VP +++ GWIT Sbjct: 1 MRPSGRTANQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L +M S + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--SKGILKANPLKHMIAALSVGIYKGTPIADLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++EVQG+AE F+ + ML +AK + +L +QK ++ Sbjct: 179 EDSVAETDMNIVMTETGKLIEVQGTAEGEPFAFEELDEMLTIAKHGLRELFDIQKAALA 237 >gi|261341748|ref|ZP_05969606.1| hypothetical protein ENTCAN_08227 [Enterobacter cancerogenus ATCC 35316] gi|288316116|gb|EFC55054.1| tRNA nucleotidyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 238 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPSGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLV-AAGKLK-TNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + ++L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLSLLALARGGIESIVTTQKAALEN 238 >gi|183597211|ref|ZP_02958704.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827] gi|188023525|gb|EDU61565.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827] Length = 237 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +QMR I ++R +K+AEGS L++FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPEGRMADQMRPIKISRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTAAI+GA VAL D L M + + +L+Q LK VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTAAISGACVALVDALNKMVE---QGKLAQSPLKSMVAAVSVGIVDGEALCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM D G ++EVQG+AE FS D ++L LAK + + + Q++ + Sbjct: 178 VEDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHDELLSLLALAKTGLGSIFEAQREAL 236 >gi|260219850|emb|CBA26795.1| Ribonuclease PH [Curvibacter putative symbiont of Hydra magnipapillata] Length = 242 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 120/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R + +R + +TR + +AEGS L++FG+T +L TA++EEKVP R + GW+T Sbjct: 5 VRQGARAADALRPVRITRHYTMHAEGSVLIEFGNTKVLCTASVEEKVPPHKRGSGEGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+QEIQR+IGR+LR+V DL LG R I +DCDVIQ Sbjct: 65 AEYGMLPRATHSRSDREAARGKQTGRTQEIQRLIGRSLRAVFDLKKLGERTIQLDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA D + + + + VAAIS G++ G P++DL+Y Sbjct: 125 ADGGTRTAAITGAFVAAQDAVNGLLAAGKITETP--ITAAVAAISVGIVEGTPLLDLEYT 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT +GH VEVQG+AE TF++ +L LA+ + +L+ LQ+ V+S Sbjct: 183 EDSACDTDMNVVMTGAGHFVEVQGTAEGVTFTRAEMDQLLTLAEKGVGELMLLQQQVLSK 242 >gi|121534591|ref|ZP_01666413.1| ribonuclease PH [Thermosinus carboxydivorans Nor1] gi|121306843|gb|EAX47763.1| ribonuclease PH [Thermosinus carboxydivorans Nor1] Length = 246 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 127/239 (53%), Positives = 163/239 (68%), Gaps = 5/239 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GRQ +R IS+TR K+AEGS ++ GDT ++ ATLE+KVP +++ T GWIT Sbjct: 1 MRIDGRQAADLRPISITRHYLKHAEGSVFIEVGDTKVICAATLEDKVPPFLKGTGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST R REA GR GR+ EIQR+IGRALRSVVDL ALG R I IDCDVIQ Sbjct: 61 AEYSLLPRSTQTRNIREAAKGRLTGRTHEIQRLIGRALRSVVDLKALGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHM-EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VAL D + + D F +K +AA+S G++ G ++DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAVNTIYTDPEKPFP----VKDFLAAVSVGVVDGAAVLDLCY 176 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT +G +VEVQG+ E+ F++ ML L + IA+LI QK+V+ Sbjct: 177 AEDSAAVVDMNIVMTGNGDLVEVQGTGEKHPFTKAQLAEMLALGERGIAELIDYQKEVL 235 >gi|110833067|ref|YP_691926.1| ribonuclease PH [Alcanivorax borkumensis SK2] gi|123345879|sp|Q0VT66|RNPH_ALCBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110646178|emb|CAL15654.1| ribonuclease PH [Alcanivorax borkumensis SK2] Length = 238 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+RE+S TR + +AEGS LV FG+T +L TA++E+ VP +++ GW+T Sbjct: 1 MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGNTKVLCTASVEDGVPRFLKGKGQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R REA G+QGGR+ EIQR+IGR+LR+ VD+ ALG R I +DCDV+Q Sbjct: 61 AEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D ++ K + L G V A+S GM P++DLDY Sbjct: 121 ADGGTRTASISGACVALVDAFTYL--LETKKIKNDPLTGLVGAVSVGMYKDTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D N VMT G +E+QGSAE A F+++ +L LA++ I ++IK Q+ Sbjct: 179 EDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDNLLELAENGIGEIIKAQQ 233 >gi|167720743|ref|ZP_02403979.1| ribonuclease PH [Burkholderia pseudomallei DM98] Length = 219 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 119/221 (53%), Positives = 161/221 (72%), Gaps = 2/221 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+TAEYGMLPR+T Sbjct: 1 MRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQADGGTRTA+I Sbjct: 61 HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQADGGTRTASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TGA+VA HD + + + + S + +VAAIS G+ G P++DLDY EDS D D N Sbjct: 121 TGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGVFGGTPVLDLDYDEDSACDTDMN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 VMT +G VEVQG+AE A FS+ A+L+LA+ I +L+ Sbjct: 179 VVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELV 219 >gi|83589383|ref|YP_429392.1| ribonuclease PH [Moorella thermoacetica ATCC 39073] gi|123524979|sp|Q2RL40|RNPH_MOOTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|83572297|gb|ABC18849.1| RNAse PH [Moorella thermoacetica ATCC 39073] Length = 250 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR ++R +++ R KYAEGS L+ GDT ++ +AT+EEKVP +++NT GWIT Sbjct: 2 LRANGRGLRELRPVTIERHYLKYAEGSALITVGDTRVICSATVEEKVPPFLKNTGKGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST R RE GR GR+QEIQR+IGR+LRSVVD+S LG R I +DCDV+Q Sbjct: 62 AEYSLLPRSTKERTIREVTRGRLTGRTQEIQRLIGRSLRSVVDMSLLGERTIWLDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VAL + L + + LK +AA+S G++ I+DLD+ Sbjct: 122 ADGGTRTAAITGSFVALAEALAGLVAAGGVPAMP--LKDFLAAVSVGLVDDELILDLDFQ 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT SG +VEVQG+AE F+++ AML+LA + I LI +QK V+ + Sbjct: 180 EDSHAGVDMNVVMTGSGQLVEVQGTAEGRPFTREQLTAMLDLAGEGIESLIAIQKQVLGD 239 >gi|238020106|ref|ZP_04600532.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748] gi|237863630|gb|EEP64920.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748] Length = 251 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 4/238 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + KF ++ AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKFPITD----FCAAISVGIGPEGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N V T SG++VEVQG+ E TF++D A+L+LA+ +L+ Q++V+ Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVL 234 >gi|85708632|ref|ZP_01039698.1| RNase PH [Erythrobacter sp. NAP1] gi|85690166|gb|EAQ30169.1| RNase PH [Erythrobacter sp. NAP1] Length = 227 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 119/228 (52%), Positives = 156/228 (68%), Gaps = 2/228 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR I++ +K+AEGSCL+ FGDT +L TA++EE++P W+R GW+T EY MLPR+T Sbjct: 1 MRTITIETGYTKHAEGSCLISFGDTKVLCTASVEERIPPWLRGKGEGWVTGEYSMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI +DCDVIQADGGTRTA+I Sbjct: 61 HTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQITLDCDVIQADGGTRTASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 +GAWVAL + + + + G VAAISCG+ G P++DLDY EDS+ D DAN Sbjct: 121 SGAWVALRLAVSKL--MAEGAIKEDPITGQVAAISCGIFEGTPVLDLDYDEDSSADADAN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 FV+ D G I EVQ +AE AT+ ++ +L LA + K Q D + Sbjct: 179 FVLIDGGQIAEVQATAEGATYDEEGLLRLLRLANIGCDAIFKAQLDAV 226 >gi|257884710|ref|ZP_05664363.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501] gi|257820548|gb|EEV47696.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501] Length = 451 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 121/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+V+L ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVSLKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|26991970|ref|NP_747395.1| ribonuclease PH [Pseudomonas putida KT2440] gi|148550402|ref|YP_001270504.1| ribonuclease PH [Pseudomonas putida F1] gi|61216052|sp|Q88C89|RNPH_PSEPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228303|sp|A5WB10|RNPH_PSEP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|24987100|gb|AAN70859.1|AE016730_5 ribonuclease PH [Pseudomonas putida KT2440] gi|148514460|gb|ABQ81320.1| RNAse PH [Pseudomonas putida F1] Length = 240 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALCDALAVIKK-RGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240 >gi|326797277|ref|YP_004315097.1| ribonuclease PH [Marinomonas mediterranea MMB-1] gi|326548041|gb|ADZ93261.1| Ribonuclease PH [Marinomonas mediterranea MMB-1] Length = 241 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 114/238 (47%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + TR +K+AEGS L++ GDT ++ TAT+ VP +++ GWIT Sbjct: 1 MRPSGRAADQLRPMKFTRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAIDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +VAL D ++ + + K + + ++ +AAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASISGGFVALADAVKTLVE-QKKLKENPIVS-QIAAISVGVYKGTPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N +M D G +E+QG+AE A F + ML++A+ I +++++Q+ V+ Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGAAFGDEQMMGMLSVARKGINEIMEMQRQVL 236 >gi|120597163|ref|YP_961737.1| ribonuclease PH [Shewanella sp. W3-18-1] gi|146291563|ref|YP_001181987.1| ribonuclease PH [Shewanella putrefaciens CN-32] gi|166228319|sp|A4Y2K5|RNPH_SHEPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228321|sp|A1RET8|RNPH_SHESW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|120557256|gb|ABM23183.1| RNAse PH [Shewanella sp. W3-18-1] gi|145563253|gb|ABP74188.1| RNAse PH [Shewanella putrefaciens CN-32] gi|319424735|gb|ADV52809.1| ribonuclease PH [Shewanella putrefaciens 200] Length = 237 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE F+ + +L LAK+ I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQKAALN 237 >gi|303241597|ref|ZP_07328096.1| ribonuclease PH [Acetivibrio cellulolyticus CD2] gi|302590817|gb|EFL60566.1| ribonuclease PH [Acetivibrio cellulolyticus CD2] Length = 282 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 124/247 (50%), Positives = 176/247 (71%), Gaps = 9/247 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+++ +R++ +TR K+AEGS L++ GDT ++ TA++++KVP + +N+ GW+T Sbjct: 25 LRIDGREKSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTASVDDKVPPFKKNSGEGWVT 84 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRSTG R +R+ + GRSQEIQR+IGRALRSVV+ ALG R IIIDCDVIQ Sbjct: 85 AEYSMLPRSTGVRNQRDISKLKLNGRSQEIQRLIGRALRSVVNFHALGERAIIIDCDVIQ 144 Query: 121 ADGGTRTAAITGAWVALHD-CLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTA+ITGA+VA+ D C + +ED K ++ + VAA+S G++ ++DL Sbjct: 145 ADGGTRTASITGAFVAMVDACKKLVEDGVIEKIPITDM----VAAVSVGIIGDEEMLDLC 200 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV- 237 YGEDS VD N VMT SG +EVQ + E++ F +D +L+LA+ I +LI +QKDV Sbjct: 201 YGEDSNAVVDMNVVMTSSGEFIEVQATGEQSPFRRDQLNKLLDLAEVGIKELISIQKDVL 260 Query: 238 --ISNEV 242 +SNE+ Sbjct: 261 GQVSNEI 267 >gi|226952284|ref|ZP_03822748.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter sp. ATCC 27244] gi|294648770|ref|ZP_06726228.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226836950|gb|EEH69333.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter sp. ATCC 27244] gi|292825340|gb|EFF84085.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 238 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 124/238 (52%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + SNK LKG +AAIS GM ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSNKKIKQDPLKGLIAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT +G +E+QG+AE F++ AML LA+ IA+LI+ Q+ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGIAELIQKQQQAL 236 >gi|237728940|ref|ZP_04559421.1| ribonuclease PH [Citrobacter sp. 30_2] gi|283787723|ref|YP_003367588.1| ribonuclease PH [Citrobacter rodentium ICC168] gi|226909562|gb|EEH95480.1| ribonuclease PH [Citrobacter sp. 30_2] gi|282951177|emb|CBG90870.1| ribonuclease PH [Citrobacter rodentium ICC168] Length = 238 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + S K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLV-ASGKLK-TNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238 >gi|227115107|ref|ZP_03828763.1| ribonuclease PH [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 238 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 160/235 (68%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNSREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M K + +KG +AA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNQMV-AKGKLK-KNPMKGMIAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D N VMT+ G ++EVQG+AE FS D +L LA+ I +++ QK Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLTLLALARGGIDTIVQAQK 233 >gi|254369050|ref|ZP_04985063.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022] gi|157121971|gb|EDO66141.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022] Length = 235 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 115/231 (49%), Positives = 161/231 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+ Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLI 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231 >gi|262281423|ref|ZP_06059204.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202] gi|262257249|gb|EEY75986.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202] Length = 238 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRELDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + S K LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT +G +E+QG+AE F++ AML +A+ IA+L+K Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELVKKQQEAL 236 >gi|295095228|emb|CBK84318.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 238 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLV-AAGKLK-TNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALEN 238 >gi|303231308|ref|ZP_07318044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6] gi|302514038|gb|EFL56044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6] Length = 257 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 162/240 (67%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+EE VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + KF ++ AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAIDFTFGGFGKFPITD----FCAAISVGIGPEGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N V T +G+++EVQG+ E TFS+D +L+LA+ +L+ +Q++V+ + Sbjct: 177 EDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRNVLGS 236 >gi|296100489|ref|YP_003610635.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054948|gb|ADF59686.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 238 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLV-AAGKLK-TNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQKAALEN 238 >gi|157783152|ref|YP_001491547.1| defective ribonuclease PH [Escherichia coli str. K-12 substr. MG1655] gi|298351814|sp|P0CG19|RNPH_ECOLI RecName: Full=Inactive ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|290493|gb|AAA61996.1| RNase PH [Escherichia coli] gi|157672248|gb|ABV59576.1| defective ribonuclease PH [Escherichia coli str. K-12 substr. MG1655] Length = 228 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/213 (55%), Positives = 152/213 (71%), Gaps = 2/213 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 EDS + D N VMT+ G I+EVQG+AE F+ Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTH 211 >gi|315635018|ref|ZP_07890299.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476280|gb|EFU67031.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] Length = 238 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNQRANHQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEDGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N LKG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALCDALNGL--VANGTLSKNPLKGLVAAISVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCEVIFQTQRAALA 237 >gi|238022211|ref|ZP_04602637.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147] gi|237866825|gb|EEP67867.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147] Length = 243 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 117/227 (51%), Positives = 163/227 (71%), Gaps = 2/227 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R +Q+R +++T +A+GS L+ G+T ++ TAT+++ VP ++R GW+TAEY Sbjct: 6 TARAAHQLRPVAITPNFLPHADGSVLMVCGNTKVICTATVDDNVPPFLRGKNQGWVTAEY 65 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VDL+ LG RQI+IDCDVIQADG Sbjct: 66 GMLPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDLTLLGERQILIDCDVIQADG 125 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL +Q + D N + L G VAA+S GM+ G P++DLDY EDS Sbjct: 126 GTRTASITGAFVALQIAIQKLLD--NGTLPANPLIGSVAAVSAGMVNGVPLLDLDYPEDS 183 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 D D N VM ++ +I+E+QG+AE A FS A++ LA+ IA L Sbjct: 184 GCDSDVNIVMLNAENIIEIQGTAEGAAFSVAELNALIALAQQGIAQL 230 >gi|312903655|ref|ZP_07762831.1| ribonuclease PH [Enterococcus faecalis TX0635] gi|310633008|gb|EFQ16291.1| ribonuclease PH [Enterococcus faecalis TX0635] Length = 451 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GWI Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWIA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|227552907|ref|ZP_03982956.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22] gi|227177961|gb|EEI58933.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22] Length = 316 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|312899597|ref|ZP_07758923.1| ribonuclease PH [Enterococcus faecalis TX0470] gi|311293276|gb|EFQ71832.1| ribonuclease PH [Enterococcus faecalis TX0470] Length = 451 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAINHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|113461435|ref|YP_719504.1| ribonuclease PH [Haemophilus somnus 129PT] gi|123132220|sp|Q0I4U1|RNPH_HAES1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|112823478|gb|ABI25567.1| RNAse PH [Haemophilus somnus 129PT] Length = 238 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ R I +TR +K+AEGS LV+FG+T ++ TAT+E+ VP +++ GW+T Sbjct: 1 MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALIDAINFL--LKNGTLTTNPIKGLVAAISVGIVNGETVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D N VM + G ++EVQG+AE FS +L+LAK L Q+ Sbjct: 179 EDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQR 233 >gi|293569789|ref|ZP_06680876.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071] gi|291587537|gb|EFF19414.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071] Length = 451 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 120/242 (49%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 A+Y MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL +G R II+DCDVIQ Sbjct: 61 AKYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKIGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|146309763|ref|YP_001174837.1| ribonuclease PH [Enterobacter sp. 638] gi|166991085|sp|A4W506|RNPH_ENT38 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145316639|gb|ABP58786.1| RNAse PH [Enterobacter sp. 638] Length = 238 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R ++LTR +K+AEGS LV FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPSGRSANQVRPVTLTRNYTKHAEGSVLVAFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + K + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL-IAAGKLK-KNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N Sbjct: 179 EDSVAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQKAALQN 238 >gi|170718459|ref|YP_001783675.1| ribonuclease PH [Haemophilus somnus 2336] gi|189043765|sp|B0UWM2|RNPH_HAES2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|168826588|gb|ACA31959.1| ribonuclease PH [Haemophilus somnus 2336] Length = 238 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ R I +TR +K+AEGS LV+FG+T ++ TAT+E+ VP +++ GW+T Sbjct: 1 MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALIDAINFL--LQNGTLTTNPIKGLVAAISVGIVNGETVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D N VM + G ++EVQG+AE FS +L+LAK L Q+ Sbjct: 179 EDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQR 233 >gi|237654670|ref|YP_002890984.1| ribonuclease PH [Thauera sp. MZ1T] gi|237625917|gb|ACR02607.1| ribonuclease PH [Thauera sp. MZ1T] Length = 243 Score = 239 bits (609), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 127/242 (52%), Positives = 171/242 (70%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ +Q+R + LTR + +AEGS LV+FG T +L TA++EE VP ++R GW+T Sbjct: 1 MRPSLRQPDQLRAVRLTRGFTCHAEGSVLVEFGATRVLCTASVEETVPGFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI++DCDV+Q Sbjct: 61 AEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLGALGERQIVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VA+HD L + + K + ++ VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGACVAVHDALVGLV-AAGKLAHNP-MREFVAAVSVGIHQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE FS+ A+L+LA+ L +LQ+ + + Sbjct: 179 EDSDCDTDMNVVMTEGGGLIEVQGTAEGTPFSRAELDALLDLAELGGRQLFELQRGAVRS 238 Query: 241 EV 242 + Sbjct: 239 AI 240 >gi|95929460|ref|ZP_01312203.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684] gi|95134576|gb|EAT16232.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684] Length = 240 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 121/235 (51%), Positives = 159/235 (67%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R RQ +Q+R ++ R ++YAEGS LV FGDT +L AT+EE VP ++R GW+T Sbjct: 3 IRADQRQPDQLRPVTFQRGYTRYAEGSVLVSFGDTVVLCNATVEESVPPFMRGEGRGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R REA G+ GGR+ EIQR+IGRALR+V+D ALG R I +DCDV+Q Sbjct: 63 AEYAMLPRATHSRNSREAARGKVGGRTHEIQRLIGRALRAVIDFDALGERTIRLDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL + + + + LK +AAIS G++ G P++DL+YG Sbjct: 123 ADGGTRTASITGAYVALAEAVNGL--LRDGVLTVSPLKDSLAAISVGIVDGQPLLDLNYG 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS DVD N VMT SG VEVQG+AE F+ AM LA A+L +Q+ Sbjct: 181 EDSKADVDMNIVMTGSGAFVEVQGTAEAEPFTAQQLDAMRALAMKGCAELAGMQR 235 >gi|119773461|ref|YP_926201.1| ribonuclease PH [Shewanella amazonensis SB2B] gi|166228315|sp|A1S2C5|RNPH_SHEAM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|119765961|gb|ABL98531.1| RNAse PH [Shewanella amazonensis SB2B] Length = 237 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q R IS+TR + +AEGS LV+FG+T +L TA+ E VP +++ + GW+T Sbjct: 1 MRPGNRTPAQTRPISITRNFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGSGQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VDL LG I++DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLKQLGENTIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGLVKANPLKFLIAAVSVGIHNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+EVQG+AE F+ + ML LAK I ++I QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEVQGTAEGEPFTHEELLTMLELAKHGIREIIDTQKAALN 237 >gi|229546199|ref|ZP_04434924.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322] gi|229550384|ref|ZP_04439109.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200] gi|255973155|ref|ZP_05423741.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1] gi|255976198|ref|ZP_05426784.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2] gi|256762130|ref|ZP_05502710.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3] gi|256852772|ref|ZP_05558142.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8] gi|256958619|ref|ZP_05562790.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5] gi|256965477|ref|ZP_05569648.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704] gi|257078027|ref|ZP_05572388.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1] gi|257082915|ref|ZP_05577276.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol] gi|257086477|ref|ZP_05580838.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6] gi|257415736|ref|ZP_05592730.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis AR01/DG] gi|257422961|ref|ZP_05599951.1| ribonuclease PH [Enterococcus faecalis X98] gi|294780993|ref|ZP_06746345.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1] gi|300860046|ref|ZP_07106134.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11] gi|307273813|ref|ZP_07555035.1| ribonuclease PH [Enterococcus faecalis TX0855] gi|307274576|ref|ZP_07555756.1| ribonuclease PH [Enterococcus faecalis TX2134] gi|307278842|ref|ZP_07559905.1| ribonuclease PH [Enterococcus faecalis TX0860] gi|307288573|ref|ZP_07568557.1| ribonuclease PH [Enterococcus faecalis TX0109] gi|307291105|ref|ZP_07570990.1| ribonuclease PH [Enterococcus faecalis TX0411] gi|312951374|ref|ZP_07770272.1| ribonuclease PH [Enterococcus faecalis TX0102] gi|229304506|gb|EEN70502.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200] gi|229308723|gb|EEN74710.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322] gi|255964173|gb|EET96649.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1] gi|255969070|gb|EET99692.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2] gi|256683381|gb|EEU23076.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3] gi|256711231|gb|EEU26269.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8] gi|256949115|gb|EEU65747.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5] gi|256955973|gb|EEU72605.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704] gi|256986057|gb|EEU73359.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1] gi|256990945|gb|EEU78247.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol] gi|256994507|gb|EEU81809.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6] gi|257157564|gb|EEU87524.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ARO1/DG] gi|257164785|gb|EEU94745.1| ribonuclease PH [Enterococcus faecalis X98] gi|294451939|gb|EFG20389.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1] gi|300850864|gb|EFK78613.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11] gi|306497759|gb|EFM67291.1| ribonuclease PH [Enterococcus faecalis TX0411] gi|306500480|gb|EFM69813.1| ribonuclease PH [Enterococcus faecalis TX0109] gi|306504513|gb|EFM73720.1| ribonuclease PH [Enterococcus faecalis TX0860] gi|306508728|gb|EFM77818.1| ribonuclease PH [Enterococcus faecalis TX2134] gi|306509498|gb|EFM78546.1| ribonuclease PH [Enterococcus faecalis TX0855] gi|310630634|gb|EFQ13917.1| ribonuclease PH [Enterococcus faecalis TX0102] gi|315028079|gb|EFT40011.1| ribonuclease PH [Enterococcus faecalis TX2137] gi|315030712|gb|EFT42644.1| ribonuclease PH [Enterococcus faecalis TX4000] gi|315031600|gb|EFT43532.1| ribonuclease PH [Enterococcus faecalis TX0017] gi|315034958|gb|EFT46890.1| ribonuclease PH [Enterococcus faecalis TX0027] gi|315148459|gb|EFT92475.1| ribonuclease PH [Enterococcus faecalis TX4244] gi|315156537|gb|EFU00554.1| ribonuclease PH [Enterococcus faecalis TX0043] gi|315158363|gb|EFU02380.1| ribonuclease PH [Enterococcus faecalis TX0312] gi|315165533|gb|EFU09550.1| ribonuclease PH [Enterococcus faecalis TX1302] gi|315168390|gb|EFU12407.1| ribonuclease PH [Enterococcus faecalis TX1341] gi|323480361|gb|ADX79800.1| ribonuclease PH [Enterococcus faecalis 62] gi|329576387|gb|EGG57900.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1467] Length = 451 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|206603687|gb|EDZ40167.1| Ribonuclease PH [Leptospirillum sp. Group II '5-way CG'] Length = 245 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +R +S+ V+ YAEGS LV+ G+T +L TA++EEKVP ++++ GW+T Sbjct: 2 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSVVD +G R I IDCDV+Q Sbjct: 62 AEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +VA+ CL E ++ ++AA+S G++ G P++DL Y Sbjct: 122 ADGGTRTASISGGFVAM--CLAFSELHKRGLMPEWPVREYLAAVSVGVVEGLPVLDLCYT 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT+SGH VE+QG+AE FS+ +L L + I ++I QK V S Sbjct: 180 EDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIACQKSVFS 238 >gi|307268764|ref|ZP_07550132.1| ribonuclease PH [Enterococcus faecalis TX4248] gi|306514892|gb|EFM83439.1| ribonuclease PH [Enterococcus faecalis TX4248] Length = 451 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|260599940|ref|YP_003212511.1| ribonuclease PH [Cronobacter turicensis z3032] gi|260219117|emb|CBA34472.1| Ribonuclease PH [Cronobacter turicensis z3032] Length = 240 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +++R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 3 MRPAGRSASEVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDVIQ Sbjct: 63 AEYGMLPRATHTRNAREAAKGKQGGRTLEIQRLIARALRAAVDLKALGEFTITLDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + K + + LKG VAA+S G++ G + DL+Y Sbjct: 123 ADGGTRTASITGACVALADALNALV-AAGKLK-TNPLKGMVAAVSVGIVNGEAVCDLEYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 181 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHEELLDLLALARGGIESIVASQKAALAN 240 >gi|291086420|ref|ZP_06355763.2| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220] gi|291068205|gb|EFE06314.1| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220] Length = 273 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT Sbjct: 36 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 95 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 96 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 155 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + S K + + +KG VAA+S G++ G + DL+Y Sbjct: 156 ADGGTRTASITGACVALADALNKLV-ASGKLK-TNPMKGMVAAVSVGIVNGEALCDLEYV 213 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 214 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 273 >gi|256618706|ref|ZP_05475552.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200] gi|257089534|ref|ZP_05583895.1| ribonuclease PH [Enterococcus faecalis CH188] gi|256598233|gb|EEU17409.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200] gi|256998346|gb|EEU84866.1| ribonuclease PH [Enterococcus faecalis CH188] gi|315577483|gb|EFU89674.1| ribonuclease PH [Enterococcus faecalis TX0630] Length = 451 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|237806963|ref|YP_002891403.1| ribonuclease PH [Tolumonas auensis DSM 9187] gi|259494130|sp|C4L818|RNPH_TOLAT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|237499224|gb|ACQ91817.1| ribonuclease PH [Tolumonas auensis DSM 9187] Length = 237 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 118/224 (52%), Positives = 157/224 (70%), Gaps = 2/224 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I++TR+ + +AEGS LV+FG T +L TAT+ E VP +++ GW+T Sbjct: 1 MRPSGRTPEQLRPITITRQYTCHAEGSVLVEFGRTKVLCTATVTEGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA SG+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRMHREAASGKQGGRTLEIQRLIARSLRAAVDLTKLGENTITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M + + L VAA+S G+ G P+ DLDY Sbjct: 121 ADGGTRTASITGACVALADALNWM--LAKGSLKTNPLNFMVAAVSVGIYEGAPVCDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS+ + D N VMT++G ++E+QG+AE FSQ+ +L L K Sbjct: 179 EDSSAETDMNLVMTETGKMIEIQGTAEGEPFSQEELMQLLELGK 222 >gi|315153645|gb|EFT97661.1| ribonuclease PH [Enterococcus faecalis TX0031] Length = 451 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LITGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|194367042|ref|YP_002029652.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3] gi|226736943|sp|B4SU06|RNPH_STRM5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|194349846|gb|ACF52969.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3] Length = 241 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R + + R +++AEGS LV FG+T +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + +L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMK-RGDIKRNPIL-GAVAAVSVGVYRGTPVLDLDYAE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L+ Q+ +S Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVRELLDAQQAALS 240 >gi|499181|emb|CAA25357.1| unnamed protein product [Escherichia coli] Length = 238 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD TRTA+ITGA VAL D LQ + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADAWTRTASITGACVALVDALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAALAN 238 >gi|332527984|ref|ZP_08404018.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2] gi|332112558|gb|EGJ12351.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2] Length = 241 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 123/229 (53%), Positives = 160/229 (69%), Gaps = 2/229 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR + +R +++TR +K+AEGS LV FGDT +L TA++EEKVP R + GW+T Sbjct: 4 VRSSGRAHDALRPVTITRHYTKHAEGSVLVCFGDTQVLCTASVEEKVPPHKRGSGEGWVT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I+IDCDV+Q Sbjct: 64 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRTVFDLGALGERSILIDCDVLQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA D + + K S + + VAAIS G++ G P++DL+Y Sbjct: 124 ADGGTRTAAITGAFVAAQDAVNWLL-AQGKIAASPI-RDQVAAISVGIVQGTPLLDLEYI 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS D D N VMT SG VE+QG+AE F++ A+L LA I + Sbjct: 182 EDSACDTDMNVVMTGSGGFVEIQGTAEGVPFTRAEMDALLALAGKGIGE 230 >gi|332798597|ref|YP_004460096.1| Ribonuclease PH [Tepidanaerobacter sp. Re1] gi|332696332|gb|AEE90789.1| Ribonuclease PH [Tepidanaerobacter sp. Re1] Length = 238 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 122/237 (51%), Positives = 170/237 (71%), Gaps = 4/237 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R I++TR +KYAEGS L++ GDT ++ TAT++EKVP ++R GWITA Sbjct: 3 RVDGRANDEIRPITITRNFNKYAEGSVLIEAGDTKVVCTATVDEKVPPFLRGKGQGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE + R GR+ EIQR+IGRALRSVVDLSALG R I +DCDVIQA Sbjct: 63 EYSMLPRATEVRNIRETL--RPSGRTMEIQRLIGRALRSVVDLSALGERTIWLDCDVIQA 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA++AL D ++ ++D NK + +K +VAAIS G++ G ++DL + E Sbjct: 121 DGGTRTASITGAFIALGDAIRTLKD--NKEIETNPIKSYVAAISAGIVDGEKMLDLRFEE 178 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS VD N VMTD G IVE+QG+ E F++ +++LA I++L+ +QK ++ Sbjct: 179 DSRAQVDMNLVMTDEGQIVEIQGTGEAFPFTRQDMNDLIDLAFKGISELVCIQKKLL 235 >gi|315170973|gb|EFU14990.1| ribonuclease PH [Enterococcus faecalis TX1342] Length = 451 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAINHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEAL 238 >gi|313894107|ref|ZP_07827673.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str. F0412] gi|313441671|gb|EFR60097.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str. F0412] Length = 251 Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 161/240 (67%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + KF ++ AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKFPITD----FCAAISVGIGPEGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N V T SG +VEVQG+ E TF++D A+L+LA+ +L+ Q++ + + Sbjct: 177 EDSAAIVDMNVVRTGSGDMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREALGS 236 >gi|302391286|ref|YP_003827106.1| RNAse PH [Acetohalobium arabaticum DSM 5501] gi|302203363|gb|ADL12041.1| RNAse PH [Acetohalobium arabaticum DSM 5501] Length = 251 Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 166/241 (68%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR +++RE+++TR +KYAEGS L+ GDT ++ A++EE VP ++R+ GWIT Sbjct: 1 MRVDGRDRDELREVTITRDFTKYAEGSILISTGDTKVICNASVEESVPYFLRDQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T +R R A G+ GR++EIQR+IGRA+RSV+DL LG R I +DCDVIQ Sbjct: 61 GEYAMLPRATESRNIRAAAKGKISGRTKEIQRLIGRAMRSVIDLDKLGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D L ++ + ++ +K +AA S G++ G P +DL Y Sbjct: 121 ADGGTRTASITGAFVALIDALDYLLEKDKIDEMP--VKSFIAATSVGIIDGAPALDLCYK 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ VD N VMT+ G I+E+QG+ E F+Q ++ L + I +LI+ QK+ + + Sbjct: 179 EDSSAQVDLNLVMTEEGRIIEIQGTGEENPFTQQELDKLVELGEKGIKELIRYQKEALGD 238 Query: 241 E 241 + Sbjct: 239 K 239 >gi|292486561|ref|YP_003529429.1| ribonuclease PH [Erwinia amylovora CFBP1430] gi|292897799|ref|YP_003537168.1| ribonuclease PH [Erwinia amylovora ATCC 49946] gi|291197647|emb|CBJ44742.1| ribonuclease PH [Erwinia amylovora ATCC 49946] gi|291551976|emb|CBA19013.1| ribonuclease PH [Erwinia amylovora CFBP1430] gi|312170622|emb|CBX78885.1| ribonuclease PH [Erwinia amylovora ATCC BAA-2158] Length = 238 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L H+ K + + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNHLVFI-GKLK-ANPMKGMVAAISVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I L+ QK +++ Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTH 238 >gi|258541167|ref|YP_003186600.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01] gi|256632245|dbj|BAH98220.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01] gi|256635302|dbj|BAI01271.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-03] gi|256638357|dbj|BAI04319.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-07] gi|256641411|dbj|BAI07366.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-22] gi|256644466|dbj|BAI10414.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-26] gi|256647521|dbj|BAI13462.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-32] gi|256650574|dbj|BAI16508.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653565|dbj|BAI19492.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-12] Length = 244 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 117/234 (50%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +QMR I++ + +AEGS L++ G T +L TA++E +VP ++R GW+T Sbjct: 1 MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG I +DCDV+ Sbjct: 61 AEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLDALGEMSITLDCDVLN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGAWVAL L + + +L L+G VAA+SCG+ ++DLDY Sbjct: 121 ADGGTRCASITGAWVALRLALGKLVATNVLPRLP--LRGQVAAVSCGLTTEGAVLDLDYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS+ D NFV+T IVE+QG+AE A F++D F + LA+ + +L + Q Sbjct: 179 EDSSASADTNFVLTADRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQ 232 >gi|315144635|gb|EFT88651.1| ribonuclease PH [Enterococcus faecalis TX2141] gi|315160934|gb|EFU04951.1| ribonuclease PH [Enterococcus faecalis TX0645] Length = 451 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEAL 238 >gi|294637890|ref|ZP_06716159.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685] gi|291088916|gb|EFE21477.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685] Length = 237 Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 125/239 (52%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR Q+R + LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T Sbjct: 1 MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + S K + S LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNALV-ASGKLKASP-LKGMVAAVSVGIVAGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L LAKD I +I+ QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKDGIGQIIQAQKAALA 237 >gi|29375698|ref|NP_814852.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583] gi|256962282|ref|ZP_05566453.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96] gi|257418951|ref|ZP_05595945.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11] gi|293383311|ref|ZP_06629226.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712] gi|293387532|ref|ZP_06632081.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613] gi|312905818|ref|ZP_07764838.1| ribonuclease PH [Enterococcus faecalis DAPTO 512] gi|312909127|ref|ZP_07767986.1| ribonuclease PH [Enterococcus faecalis DAPTO 516] gi|29343159|gb|AAO80922.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583] gi|256952778|gb|EEU69410.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96] gi|257160779|gb|EEU90739.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11] gi|291079334|gb|EFE16698.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712] gi|291083042|gb|EFE20005.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613] gi|310628157|gb|EFQ11440.1| ribonuclease PH [Enterococcus faecalis DAPTO 512] gi|311290551|gb|EFQ69107.1| ribonuclease PH [Enterococcus faecalis DAPTO 516] gi|315174641|gb|EFU18658.1| ribonuclease PH [Enterococcus faecalis TX1346] gi|315573714|gb|EFU85905.1| ribonuclease PH [Enterococcus faecalis TX0309B] gi|315582671|gb|EFU94862.1| ribonuclease PH [Enterococcus faecalis TX0309A] gi|327534753|gb|AEA93587.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis OG1RF] Length = 451 Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|188532222|ref|YP_001906019.1| ribonuclease PH [Erwinia tasmaniensis Et1/99] gi|226736908|sp|B2VF76|RNPH_ERWT9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|188027264|emb|CAO95107.1| Ribonuclease PH (tRNA nucleotidyltransferase) [Erwinia tasmaniensis Et1/99] Length = 238 Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L H+ S + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNHL--VSTGKLKANPMKGMVAAISVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED+ + D N VMT+ G ++EVQG+AE FS + +L LA+ I L+ QK +++ Sbjct: 179 EDAAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTD 238 >gi|257085617|ref|ZP_05579978.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1] gi|256993647|gb|EEU80949.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1] Length = 451 Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|124515183|gb|EAY56694.1| ribonuclease PH [Leptospirillum rubarum] Length = 245 Score = 237 bits (605), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +R +S+ V+ YAEGS LV+ G+T +L TA++EEKVP ++++ GW+T Sbjct: 2 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSVVD +G R I IDCDV+Q Sbjct: 62 AEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +VA+ CL E ++ ++AA+S G++ G P++DL Y Sbjct: 122 ADGGTRTASISGGFVAM--CLAFSELHKRGLMPEWPVREYLAAVSVGVVEGEPVLDLCYT 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT+SGH VE+QG+AE FS+ +L L + I ++I QK V S Sbjct: 180 EDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIVCQKSVFS 238 >gi|150388786|ref|YP_001318835.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF] gi|149948648|gb|ABR47176.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF] Length = 255 Score = 237 bits (605), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 116/237 (48%), Positives = 166/237 (70%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R + T+ +K+A+GS LV+ G+T ++ TA +EE+VP +++N+ GW+TA Sbjct: 3 RVDGRKFDELRPVKFTKNYTKHAQGSVLVEMGETKVICTAMVEERVPHFLKNSGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+ G+ GR+QEIQR+IGRALRSV+DL ALG R I IDCDVIQA Sbjct: 63 EYSMLPSSTNTRKIRESSRGKIEGRTQEIQRLIGRALRSVIDLEALGERTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA++AL + + +++ + +K +V+AIS G++ P++DL Y E Sbjct: 123 DGGTRTASITGAFIALVEAINSVKEAKKITYIP--IKNYVSAISVGIVNDQPVLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS VD N VMTD +EVQG+ E A FS+D +L L ++ A LI LQK+V+ Sbjct: 181 DSKAMVDMNIVMTDMKEFIEVQGTGEEAPFSRDSLMELLRLGEEGNAQLIALQKEVL 237 >gi|270157357|ref|ZP_06186014.1| ribonuclease PH [Legionella longbeachae D-4968] gi|289164250|ref|YP_003454388.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Legionella longbeachae NSW150] gi|269989382|gb|EEZ95636.1| ribonuclease PH [Legionella longbeachae D-4968] gi|288857423|emb|CBJ11251.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Legionella longbeachae NSW150] Length = 235 Score = 237 bits (605), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 117/235 (49%), Positives = 161/235 (68%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ NQ+R I LTR +K+AEGS LV+FG T +L A++ E VP +I+ GW+T Sbjct: 1 MRPSNREANQLRPIQLTRNYTKHAEGSVLVEFGQTKVLCNASVTEGVPRFIKGKNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+IGR+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTEREASKGKQGGRTMEIQRLIGRSLRACVDLKFLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+ VA+ D + M + ++ ++AA+S G+ G ++DLDY Sbjct: 121 ADGGTRTAAITGSCVAMRDAISWMVEREKIRRMPAF--NYIAAVSVGLYRGQAVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED + D N VM ++GH +E+QG+AE F+++ ML LA+ I LI++QK Sbjct: 179 EDVLAETDMNVVMNEAGHFIEIQGTAEDRHFNREELNNMLALAEIGIPQLIEIQK 233 >gi|332529685|ref|ZP_08405639.1| ribonuclease ph [Hylemonella gracilis ATCC 19624] gi|332040706|gb|EGI77078.1| ribonuclease ph [Hylemonella gracilis ATCC 19624] Length = 254 Score = 237 bits (605), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 121/243 (49%), Positives = 164/243 (67%), Gaps = 6/243 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R +Q+R + +TR + +AEGS L++FG T +L TA++EE+VP + + GW+T Sbjct: 13 LRADQRAADQLRAVRITRHYTVHAEGSVLIEFGRTRVLCTASVEERVPPHKKGSGEGWVT 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+Q Sbjct: 73 AEYGMLPRSTHTRSDREAARGKQNGRTQEIQRLIGRSLRAVFDLKALGERTITLDCDVLQ 132 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVA D + + K S ++ VAA+S G++ G ++DL+Y Sbjct: 133 ADGGTRTAAITGAWVAAQDAVNTL-IAQGKLTTSPII-APVAAVSVGIVEGQALLDLEYT 190 Query: 181 EDSTIDVDANFVMT----DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS D D N VMT GH +EVQG+AE A FS+ A+L LA+ I +L+ LQ+ Sbjct: 191 EDSACDTDMNVVMTVNAAGEGHYIEVQGTAEGAAFSRKEMDALLALAEKGIHELVALQRQ 250 Query: 237 VIS 239 ++ Sbjct: 251 ALA 253 >gi|302560437|ref|ZP_07312779.1| ribonuclease PH [Streptomyces griseoflavus Tu4000] gi|302478055|gb|EFL41148.1| ribonuclease PH [Streptomyces griseoflavus Tu4000] Length = 245 Score = 237 bits (605), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 118/237 (49%), Positives = 159/237 (67%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D +Q +D + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVQWAQDKKLVRAGRRPLTGTVSAVSVGIVGGVPLLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D D N V T G VEVQG+AE F++D A+L+LA A+L Q+ + Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVTGCAELAAAQRKAL 239 >gi|304399022|ref|ZP_07380891.1| ribonuclease PH [Pantoea sp. aB] gi|308188661|ref|YP_003932792.1| ribonuclease PH [Pantoea vagans C9-1] gi|304353482|gb|EFM17860.1| ribonuclease PH [Pantoea sp. aB] gi|308059171|gb|ADO11343.1| ribonuclease PH [Pantoea vagans C9-1] Length = 238 Score = 237 bits (605), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FG+T +L TA+++E VP +++ GW+T Sbjct: 1 MRPAGRSAQQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTASVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKALGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + S K + + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLV-ASGKLK-ANPMKGMVAAISVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I +LI+ QK + N Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIEELIQAQKAALEN 238 >gi|304413132|ref|ZP_07394605.1| ribonuclease PH [Candidatus Regiella insecticola LSR1] gi|304283975|gb|EFL92368.1| ribonuclease PH [Candidatus Regiella insecticola LSR1] Length = 242 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL+GR Q+R ++LTR +KYAEGS LV+FGDT +L TAT+EE +P +++ GWIT Sbjct: 1 MRLAGRAAEQVRPLTLTRHYTKYAEGSVLVEFGDTKVLCTATIEEGIPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I IDCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLQQLGEHTITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GA VAL D L+ + K ++G VAAIS G++ + DL+Y Sbjct: 121 ADGGTRTAAISGASVALADALE--KAVIKKKLKKNPMRGLVAAISVGIVKNEALGDLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D N VM + ++EVQG+AE FS + +L LA+ I + + QK ++ Sbjct: 179 EDANAETDMNVVMMEDYQMIEVQGTAEGKPFSHEQLLTLLALARGGIGTIFQAQKAALA 237 >gi|329114777|ref|ZP_08243534.1| Ribonuclease PH [Acetobacter pomorum DM001] gi|326695908|gb|EGE47592.1| Ribonuclease PH [Acetobacter pomorum DM001] Length = 267 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 117/234 (50%), Positives = 160/234 (68%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +QMR I++ + +AEGS L++ G T +L TA++E +VP ++R GW+T Sbjct: 24 MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVT 83 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL+ALG I +DCDV+ Sbjct: 84 AEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLNALGEMSITLDCDVLN 143 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGAWVAL L + + +L L+G VAA+SCG+ ++DLDY Sbjct: 144 ADGGTRCASITGAWVALRLALGKLVATNVLPRLP--LRGQVAAVSCGLTTEGAVLDLDYV 201 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS+ D NFV+T IVE+QG+AE A F++D F + LA+ + +L + Q Sbjct: 202 EDSSASADTNFVLTADRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQ 255 >gi|293611262|ref|ZP_06693560.1| ribonuclease PH [Acinetobacter sp. SH024] gi|292826513|gb|EFF84880.1| ribonuclease PH [Acinetobacter sp. SH024] gi|325124022|gb|ADY83545.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 238 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + S K LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT +G +E+QG+AE F++ AML +A+ IA+LIK Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEAL 236 >gi|227518377|ref|ZP_03948426.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104] gi|227074055|gb|EEI12018.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104] Length = 451 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 118/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R +++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSVVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|315127898|ref|YP_004069901.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp. SM9913] gi|315016412|gb|ADT69750.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp. SM9913] Length = 237 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GW+ Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWVN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRATHTRNSREATRGKQGGRTMEIQRLIARSLRAAIDLKALGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L +M + S LK +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALTYMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N ++T++G I+EVQG+AE FS D +L LAK I ++I +QK ++ Sbjct: 179 EDSDAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237 >gi|58039735|ref|YP_191699.1| ribonuclease PH [Gluconobacter oxydans 621H] gi|58002149|gb|AAW61043.1| Ribonuclease PH [Gluconobacter oxydans 621H] Length = 240 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 117/237 (49%), Positives = 159/237 (67%), Gaps = 7/237 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR ++ R +S+ +++AEGS L++ G T +L TAT+E++VP ++RN GWITA Sbjct: 8 RPSGRAPDENRIVSIETGFARHAEGSALIRVGGTEVLCTATIEDRVPPFLRNKGQGWITA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R +REA G+Q GR+QEIQR+I R+LR+ VDL +G R I +DCDV+ A Sbjct: 68 EYGMLPRATHSRGQREAAKGKQSGRTQEIQRLIARSLRACVDLKKIGERTITLDCDVLNA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVAL L+ K + SQ L VAA+SCG+ ++DLDY E Sbjct: 128 DGGTRCASITGAWVALSLALK-------KAKRSQALTAQVAAVSCGLTDAGAVLDLDYVE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS+ D NFV+T G I+E+QG+AE F + FF +L LAK A L + Q + Sbjct: 181 DSSAQADTNFVLTADGGIIEIQGTAEDKPFQESEFFELLRLAKLGTARLFEAQNKAL 237 >gi|37528679|ref|NP_932024.1| ribonuclease PH [Photorhabdus luminescens subsp. laumondii TTO1] gi|61215997|sp|Q7MAX2|RNPH_PHOLL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|36788118|emb|CAE17242.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 242 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 121/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R I++TR +K+AEGS LV+FGDT +L A++EE VP +++ GW+T Sbjct: 1 MRPTGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + + K + S LK VAA+S G++ G DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNKIVE-AGKLKESP-LKSMVAAVSVGIVDGEGRCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS D ++L LAK + D+ Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLALAKGGLEDIFDAQRNAL 236 >gi|169632071|ref|YP_001705807.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter baumannii SDF] gi|169797749|ref|YP_001715542.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter baumannii AYE] gi|184156383|ref|YP_001844722.1| ribonuclease PH [Acinetobacter baumannii ACICU] gi|213155451|ref|YP_002317496.1| ribonuclease PH [Acinetobacter baumannii AB0057] gi|215485100|ref|YP_002327341.1| ribonuclease PH [Acinetobacter baumannii AB307-0294] gi|239503769|ref|ZP_04663079.1| ribonuclease PH [Acinetobacter baumannii AB900] gi|260552994|ref|ZP_05825909.1| ribonuclease PH [Acinetobacter sp. RUH2624] gi|260557749|ref|ZP_05829963.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606] gi|301347449|ref|ZP_07228190.1| ribonuclease PH [Acinetobacter baumannii AB056] gi|301513309|ref|ZP_07238546.1| ribonuclease PH [Acinetobacter baumannii AB058] gi|301595797|ref|ZP_07240805.1| ribonuclease PH [Acinetobacter baumannii AB059] gi|332852852|ref|ZP_08434434.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150] gi|332866699|ref|ZP_08437161.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113] gi|332873553|ref|ZP_08441502.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059] gi|226736873|sp|B7H2J6|RNPH_ACIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736874|sp|B7IBN8|RNPH_ACIB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736875|sp|B2I029|RNPH_ACIBC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736876|sp|B0VMP4|RNPH_ACIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736877|sp|B0V5W8|RNPH_ACIBY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226737251|sp|A3M0U3|RNPH_ACIBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|169150676|emb|CAM88586.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter baumannii AYE] gi|169150863|emb|CAO99466.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter baumannii] gi|183207977|gb|ACC55375.1| RNase PH [Acinetobacter baumannii ACICU] gi|193075957|gb|ABO10537.2| ribonuclease PH [Acinetobacter baumannii ATCC 17978] gi|213054611|gb|ACJ39513.1| ribonuclease PH [Acinetobacter baumannii AB0057] gi|213986624|gb|ACJ56923.1| ribonuclease PH [Acinetobacter baumannii AB307-0294] gi|260405236|gb|EEW98733.1| ribonuclease PH [Acinetobacter sp. RUH2624] gi|260408922|gb|EEX02226.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606] gi|322506253|gb|ADX01707.1| RNase PH [Acinetobacter baumannii 1656-2] gi|323516129|gb|ADX90510.1| ribonuclease PH [Acinetobacter baumannii TCDC-AB0715] gi|332728966|gb|EGJ60317.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150] gi|332734468|gb|EGJ65583.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113] gi|332738250|gb|EGJ69128.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059] Length = 238 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + K LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT +G +E+QG+AE F++ AML +A+ IA+LIK Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEAL 236 >gi|225849820|ref|YP_002730054.1| ribonuclease PH [Persephonella marina EX-H1] gi|254808597|sp|C0QTN9|RNPH_PERMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|225646433|gb|ACO04619.1| ribonuclease PH [Persephonella marina EX-H1] Length = 261 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 119/238 (50%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ Q+R + + R + YAEGS L++ G+T ++ TA++EEKVP ++R T GWIT Sbjct: 1 MRPDGRKPTQLRPVKIIRDFNIYAEGSVLIEMGNTKVIITASIEEKVPPFLRGTGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R RE V G GR+QEIQR+IGR+LR VVDL LG R + +DCDVIQ Sbjct: 61 AEYAMLPRSTESRSIREVVRGAPSGRTQEIQRLIGRSLRGVVDLKKLGERTLWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGA++A+ D + + + Q LK +VAAIS G++ ++DL++ Sbjct: 121 ADGGTRVASITGAFIAVADAMIKLTESGKVRQ--NPLKDYVAAISTGIVGNEVVLDLNFK 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ VD N VMT SG+ VEVQ + E +F+Q F ML K I LI +QK I Sbjct: 179 EDSSAKVDMNLVMTGSGNFVEVQATGEEYSFTQQEFDKMLEYGKLGINKLIHIQKKFI 236 >gi|157373519|ref|YP_001472119.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3] gi|189043777|sp|A8FQ68|RNPH_SHESH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157315893|gb|ABV34991.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3] Length = 237 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDSLNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++E+QG+AE FS + ++L LAK I +++ +QK +S Sbjct: 179 EDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKAALS 237 >gi|242237612|ref|YP_002985793.1| ribonuclease PH [Dickeya dadantii Ech703] gi|242129669|gb|ACS83971.1| ribonuclease PH [Dickeya dadantii Ech703] Length = 238 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q R I+LTR +K+AEG+ LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPTGRSAQQTRPITLTRHYTKHAEGAVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAARGKQGGRTLEIQRLIARSLRAAVDLAKLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + S K +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADAIAGLV-ASGKLA-KNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I D+I+ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEQLLELLALARGGIEDIIRAQKAALAN 238 >gi|255320662|ref|ZP_05361839.1| ribonuclease PH [Acinetobacter radioresistens SK82] gi|262380705|ref|ZP_06073858.1| ribonuclease PH [Acinetobacter radioresistens SH164] gi|255302278|gb|EET81518.1| ribonuclease PH [Acinetobacter radioresistens SK82] gi|262297653|gb|EEY85569.1| ribonuclease PH [Acinetobacter radioresistens SH164] Length = 238 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R NQ+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALNQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + K LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LERKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT +G +E+QG+AE F++ AML LA+ I++LIK Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQCNAMLELAEQGISELIKKQQEAL 236 >gi|167622362|ref|YP_001672656.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4] gi|189043775|sp|B0TQK4|RNPH_SHEHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|167352384|gb|ABZ74997.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4] Length = 237 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T Sbjct: 1 MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+QEIQR+IGR+LR+ VD+ LG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + ++L LAK I +++ +QK +S Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKASLS 237 >gi|146328830|ref|YP_001209573.1| ribonuclease PH [Dichelobacter nodosus VCS1703A] gi|166228278|sp|A5EV74|RNPH_DICNV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|146232300|gb|ABQ13278.1| ribonuclease PH [Dichelobacter nodosus VCS1703A] Length = 238 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 118/239 (49%), Positives = 168/239 (70%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +QMRE+ + R V+ +AEGS L+ G T +L TA++EE+VP ++R GW+T Sbjct: 1 MRPHHRLPDQMRELHIERAVNCHAEGSALITLGRTQVLCTASIEERVPPFLRGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDLSALG R I +DCDV+Q Sbjct: 61 AEYGMLPRATHERSTREAARGKQQGRTQEIQRLIGRSLRAVVDLSALGERSITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQ-HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTAAI+G ++AL D ++ M+ K + L+G +AA+S G G ++DL+Y Sbjct: 121 ADGGTRTAAISGGFIALADAIRVLMQQGRLK---ANPLRGQLAAVSVGFYQGEALLDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM D+G ++E+QG+AE FS+ A+L+LA+ I++++ Q+ V+ Sbjct: 178 CEDSAAETDMNIVMNDAGALIEIQGTAEGRAFSRQEMNALLDLAEKGISEIMAEQRRVL 236 >gi|326318286|ref|YP_004235958.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375122|gb|ADX47391.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860] Length = 253 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR + +R + +TR + +AEGS LV+FG T +L TA++EE+VP R + GW+TA Sbjct: 12 RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTA 71 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA Sbjct: 72 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQA 131 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA HD + + K S + +AA+S G++ G P++DL+Y E Sbjct: 132 DGGTRTAAITGAWVAAHDAVSALL-AGGKIAASPI-TAPLAAVSVGIVQGTPLLDLEYTE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D D N VM D G VEVQG+AE F++ +L+LA + LI LQ+ +S Sbjct: 190 DVQCDTDMNVVMMDGGRFVEVQGTAEGVAFTRSEMDRLLDLAAQGVDALIALQRQALS 247 >gi|311277436|ref|YP_003939667.1| ribonuclease PH [Enterobacter cloacae SCF1] gi|308746631|gb|ADO46383.1| ribonuclease PH [Enterobacter cloacae SCF1] Length = 238 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +Q+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L ++ + K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNNLV-AAGKLK-TNPMKGMVAAVSVGIVDGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALEN 238 >gi|262374498|ref|ZP_06067772.1| ribonuclease PH [Acinetobacter junii SH205] gi|262310494|gb|EEY91584.1| ribonuclease PH [Acinetobacter junii SH205] Length = 238 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + SNK LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSNKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT +G +E+QG+AE F++ AML LA+ I++LI+ Q+ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGISELIQKQQQAL 236 >gi|46015433|pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Pseudomonas Aeruginosa Length = 239 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 121/238 (50%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYG LPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA Sbjct: 63 EYGXLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGATVALIDALAVLK--KRGALKGNPLKQXVAAVSVGIYQGVPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N V TD+G +EVQG+AE A F A L LA+ +L +LQ+ ++ Sbjct: 181 DSAAETDLNVVXTDAGGFIEVQGTAEGAPFRPAELNAXLELAQQGXQELFELQRAALA 238 >gi|307546985|ref|YP_003899464.1| ribonuclease PH [Halomonas elongata DSM 2581] gi|307219009|emb|CBV44279.1| ribonuclease PH [Halomonas elongata DSM 2581] Length = 245 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 119/242 (49%), Positives = 165/242 (68%), Gaps = 12/242 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q R+I LTR +++AEGS LV+FGDT +L A++E VP W+R K GW+TA Sbjct: 7 RPSGRATDQTRDIRLTRDYTRHAEGSVLVEFGDTRVLCNASVEAGVPRWLRGKKQGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ ++L LG I +DCDVIQA Sbjct: 67 EYGMLPRATHTRGGREASRGKQGGRTVEIQRLIGRSLRASINLKKLGEFTITVDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-----VAAISCGMLCGYPIVD 176 DGGTRTAAITG VAL D ++++ Q +++KG ++++S G+ G P+VD Sbjct: 127 DGGTRTAAITGGCVALVDAVRYL-------QREKLIKGDPFHQLISSVSVGIYQGTPVVD 179 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 LDY EDS D N VM ++G ++EVQG+AE T+S+ AML+LA+ +L Q++ Sbjct: 180 LDYPEDSRAGTDMNVVMAENGELIEVQGTAESGTYSRAELNAMLDLAEKAGGELFDHQRE 239 Query: 237 VI 238 + Sbjct: 240 AL 241 >gi|322418585|ref|YP_004197808.1| ribonuclease PH [Geobacter sp. M18] gi|320124972|gb|ADW12532.1| ribonuclease PH [Geobacter sp. M18] Length = 239 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 119/237 (50%), Positives = 164/237 (69%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR + +RE+ +TR K+AEGS L++FGDT ++ AT+E KVP +++ GW+TA Sbjct: 3 RTNGRAADALREVKITRNYLKHAEGSVLIEFGDTKVICNATVETKVPSFLKGKGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVD+ LG R I+IDCDVIQA Sbjct: 63 EYCMLPRATHTRNQRESSKGKLSGRTHEIQRLIGRSLRAVVDMEKLGERSILIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D LQ + D N L+ VAA+S G++ G P +DLDY E Sbjct: 123 DGGTRTASITGAYVALADALQSLVD--NGELTRSPLREAVAAVSVGIVDGVPFLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS+ +VD NFVMT S VEVQG+AE F+ + AM + A + L ++Q++ + Sbjct: 181 DSSAEVDMNFVMTSSMRFVEVQGTAEAEPFTIEQMDAMRSHAILGLTRLFEIQQEAL 237 >gi|309388890|gb|ADO76770.1| RNAse PH [Halanaerobium praevalens DSM 2228] Length = 239 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 119/241 (49%), Positives = 165/241 (68%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ NQ+REI +TR +KYAEGS L++ GDT +L ++E+ VP ++R GW+T Sbjct: 1 MRTDGREYNQLREIEITRNYTKYAEGSVLIETGDTMVLCNVSIEDSVPYFLRGQNKGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPR+T +R REA + GR+QEIQR+IGR+LR+++DL +G R I +DCDV+Q Sbjct: 61 AEYSLLPRATQSRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLEKIGERTIWVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + K + LKG++AA S G++ G ++DL Y Sbjct: 121 ADGGTRTAAITGAFVALVDGINFLL-AEGKIE-ENPLKGYMAATSVGLVKGEALLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT++G I+E+QG+AE FS++ M LA+ I LI+ QK V+ Sbjct: 179 EDSQAQVDMNIVMTEAGKIIEIQGTAEENPFSREELDQMYELAEKGILGLIEEQKLVLGG 238 Query: 241 E 241 E Sbjct: 239 E 239 >gi|209364175|ref|YP_001425114.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111] gi|212213192|ref|YP_002304128.1| ribonuclease PH [Coxiella burnetii CbuG_Q212] gi|212218134|ref|YP_002304921.1| ribonuclease PH [Coxiella burnetii CbuK_Q154] gi|215918932|ref|NP_819342.2| ribonuclease PH [Coxiella burnetii RSA 493] gi|206583817|gb|AAO89856.2| ribonuclease PH [Coxiella burnetii RSA 493] gi|207082108|gb|ABS77511.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111] gi|212011602|gb|ACJ18983.1| ribonuclease PH [Coxiella burnetii CbuG_Q212] gi|212012396|gb|ACJ19776.1| ribonuclease PH [Coxiella burnetii CbuK_Q154] Length = 239 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R N++R +S T + ++YAEGS LV G+T ++ A++ E VP +++N++ GW+T Sbjct: 3 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQGWLT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL LG I IDCDVIQ Sbjct: 63 AEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI G+ +A+ + L+H++ + LK VAA+S G+ G P++DLDY Sbjct: 123 ADGGTRTAAINGSCIAMIEALRHLQ--RKGILQTDPLKHKVAAVSVGIYKGVPVLDLDYA 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMTD+ +E+QG+AE F A++NLA+ I +I+ Q++ +S Sbjct: 181 EDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEALS 239 >gi|153208640|ref|ZP_01946892.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177'] gi|161829800|ref|YP_001596248.1| ribonuclease PH [Coxiella burnetii RSA 331] gi|165919767|ref|ZP_02219510.1| ribonuclease PH [Coxiella burnetii RSA 334] gi|61216043|sp|Q83EL9|RNPH_COXBU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043758|sp|A9KGR9|RNPH_COXBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043759|sp|A9NB33|RNPH_COXBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|120575826|gb|EAX32450.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177'] gi|161761667|gb|ABX77309.1| ribonuclease PH [Coxiella burnetii RSA 331] gi|165916850|gb|EDR35454.1| ribonuclease PH [Coxiella burnetii RSA 334] Length = 237 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R N++R +S T + ++YAEGS LV G+T ++ A++ E VP +++N++ GW+T Sbjct: 1 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI G+ +A+ + L+H++ + LK VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTAAINGSCIAMIEALRHLQ--RKGILQTDPLKHKVAAVSVGIYKGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMTD+ +E+QG+AE F A++NLA+ I +I+ Q++ +S Sbjct: 179 EDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEALS 237 >gi|257783975|ref|YP_003179192.1| ribonuclease PH [Atopobium parvulum DSM 20469] gi|257472482|gb|ACV50601.1| ribonuclease PH [Atopobium parvulum DSM 20469] Length = 253 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/238 (52%), Positives = 165/238 (69%), Gaps = 6/238 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R +Q+R ++L R + K A+GSCLV FGDT +L AT+EE VP W R ++ GW+T Sbjct: 16 LRSYNRAWDQIRPVTLERNLMKNADGSCLVSFGDTRVLCAATIEEGVPAWRRASRAGWVT 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST R KRE + + GRS EI+R+IGR+LRSVVDL+ LG I +DCDV+Q Sbjct: 76 AEYAMLPASTNQRTKRERANRK--GRSMEIERLIGRSLRSVVDLNRLGEYTITLDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGAWVALHD L + + K LS++ L G VAAIS G++ G ++DLDY Sbjct: 134 ADGGTRTASITGAWVALHDALFSLVE---KDVLSRLPLTGQVAAISMGVVDGQVLLDLDY 190 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS D+D N V T+SG I+EVQG+ E F ++ +L++ + IA L++LQ V Sbjct: 191 PEDSHADIDMNLVGTESGQIIEVQGTGEGGPFDREKLNQLLDVGQAGIAHLVELQNQV 248 >gi|300721256|ref|YP_003710526.1| RNase PH [Xenorhabdus nematophila ATCC 19061] gi|297627743|emb|CBJ88269.1| RNase PH [Xenorhabdus nematophila ATCC 19061] Length = 247 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 119/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR Q+R I +TR +K+AEGS LV+FGDT +L A++EE +P +++ GWITA Sbjct: 7 RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQA Sbjct: 67 EYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAI+GA VAL D L + K + S LK VAA+S G++ G + DL+Y E Sbjct: 127 DGGTRTAAISGACVALVDALNKLV-ADGKLKESP-LKSMVAAVSVGIVGGEGLCDLEYVE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS + D N VM D G ++EVQG+AE FS D ++L+LAK+ + + + Q+D + + Sbjct: 185 DSAAETDMNVVMIDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFEAQRDALKQD 244 >gi|312880664|ref|ZP_07740464.1| RNAse PH [Aminomonas paucivorans DSM 12260] gi|310783955|gb|EFQ24353.1| RNAse PH [Aminomonas paucivorans DSM 12260] Length = 248 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 120/237 (50%), Positives = 163/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + +R + L R ++YAEGS + FG T +L TAT+E+KVP ++R + GW++A Sbjct: 3 RIDGRSFDALRPLELERGCNRYAEGSARIAFGHTQVLCTATVEDKVPPFLRGSGKGWVSA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R R++ GR R QEIQR+IGR+LR+ VDL ALG R + IDCDVIQA Sbjct: 63 EYAMLPRATHQRTPRDSTRGRPNARGQEIQRLIGRSLRAAVDLEALGERTVWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L+ + D + L L+ VAA+S G+L G P++DL Y E Sbjct: 123 DGGTRTASITGAFVALVDALRWIRDRNGLPSLP--LRHQVAAVSVGLLGGCPLLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS +VD N VM + G VE+QG+ E A FS+ F A+L+LA+ IA L +LQ+ + Sbjct: 181 DSGAEVDCNVVMAEDGRFVEIQGTGEDALFSRASFDALLDLARQGIAALHRLQRSTL 237 >gi|315150398|gb|EFT94414.1| ribonuclease PH [Enterococcus faecalis TX0012] Length = 451 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D ML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNTMLFYGKTGIEELIAYQKEAL 238 >gi|291619462|ref|YP_003522204.1| Rph [Pantoea ananatis LMG 20103] gi|291154492|gb|ADD79076.1| Rph [Pantoea ananatis LMG 20103] gi|327395785|dbj|BAK13207.1| ribonuclease Rph [Pantoea ananatis AJ13355] Length = 238 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +Q+R ++LTR +K+AEGS LV+FG+T +L TAT++E VP +++ GW+T Sbjct: 1 MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKVLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + S K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLV-ASGKLK-ANPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I +LI+ QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIEELIQAQKAALEK 238 >gi|332970986|gb|EGK09959.1| tRNA nucleotidyltransferase [Kingella kingae ATCC 23330] Length = 242 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 118/234 (50%), Positives = 164/234 (70%), Gaps = 4/234 (1%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R N++REI +T +A+GS L++ G+T ++ TAT++E VP ++R GW+TAEYGM Sbjct: 8 RAANELREIRITPNFLPHADGSVLIECGNTKVICTATIDENVPPFLRGKNQGWVTAEYGM 67 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VD+ LG RQI+IDCDVIQADGGT Sbjct: 68 LPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDMQKLGERQILIDCDVIQADGGT 127 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDST 184 RTA+ITGA+VAL +Q M N +L+ L G VAAIS G++ G P++DLDY EDS Sbjct: 128 RTASITGAFVALKIAVQKM---LNDGRLTDTPLMGSVAAISVGVVGGVPLLDLDYPEDSG 184 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N VM ++ I+E+QG+AE A F D ++ L + I +L + Q+ + Sbjct: 185 CDSDVNLVMLNAEKIIEIQGTAEGAAFGLDELQQLIALGQKGIRELTEWQEKAV 238 >gi|226326904|ref|ZP_03802422.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198] gi|225204741|gb|EEG87095.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198] Length = 251 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/238 (52%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ NQ+R I++TR +K+AEGS LV+FGDT +L AT+E+ VP +++ GW+T Sbjct: 14 MRPADRQANQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ Sbjct: 74 AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L M + K + S LK VAA+S G++ G P+ DL+Y Sbjct: 134 ADGGTRTASISGACVALVDALNKMVE-EGKLKKSP-LKSMVAAVSVGIVDGEPLCDLEYV 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM D G ++EVQG+AE A FS + A+L LAK + + + QK+ + Sbjct: 192 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEAL 249 >gi|296134058|ref|YP_003641305.1| ribonuclease PH [Thermincola sp. JR] gi|296032636|gb|ADG83404.1| ribonuclease PH [Thermincola potens JR] Length = 239 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 119/241 (49%), Positives = 162/241 (67%), Gaps = 6/241 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TR K+AEGS L++ GDT ++ TAT+E+KVP +++ GWITA Sbjct: 3 RNDGRANDQLRPVKITRHYIKHAEGSVLIEMGDTKVICTATVEDKVPPFMKGEGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRS R+ REA G+ GGR+ EIQR+IGR+LR+VVDL ALG R + +DCDVIQA Sbjct: 63 EYGMLPRSAATRIPREAAKGKIGGRTYEIQRLIGRSLRAVVDLEALGERTVTVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTA+ITGA+VAL D L+H D KF + ++AA+S G + G ++DL + Sbjct: 123 DGGTRTASITGAFVALVDALRHQVDQGVLEKFPVLD----YMAAVSVGKVNGEILLDLAF 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT G +EVQG+AE + F ++ L +A I LI+ Q +V+ Sbjct: 179 SEDSVAEVDMNVVMTRGGKFLEVQGTAEGSPFDREELEKFLEMAGKGIQQLIQAQMEVLG 238 Query: 240 N 240 Sbjct: 239 E 239 >gi|119947081|ref|YP_944761.1| ribonuclease PH [Psychromonas ingrahamii 37] gi|166228305|sp|A1T097|RNPH_PSYIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|119865685|gb|ABM05162.1| RNAse PH [Psychromonas ingrahamii 37] Length = 239 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 120/241 (49%), Positives = 158/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q REI +TR + YAEGS L++ G+T +L A++ VP +++ GW+T Sbjct: 1 MRPSNRTPEQNREIKITRHYTDYAEGSVLIEMGNTKVLCNASVSGSVPRFLKGKGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL+ALG I +DCDVIQ Sbjct: 61 AEYAMLPRATHIRNMREAAKGKQGGRTLEIQRLIARSLRAAVDLNALGENMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +AL D L M K + S LK +AA+S G+ G P+ DLDY Sbjct: 121 ADGGTRTAAITGGCIALADALNWMVK-KGKLKKSP-LKQMIAAVSVGIYQGTPVCDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+SG ++E+Q +AE FS + +ML+LAK I L+ QK ++ Sbjct: 179 EDSNAETDTNVVMTESGGLIEIQATAEDGAFSHEQLLSMLSLAKGGIEALVVEQKKALNA 238 Query: 241 E 241 E Sbjct: 239 E 239 >gi|88797478|ref|ZP_01113067.1| ribonuclease PH [Reinekea sp. MED297] gi|88779650|gb|EAR10836.1| ribonuclease PH [Reinekea sp. MED297] Length = 239 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+RE++L R +K+AEGS LV FGDT ++ TA+++ VP +++ GW+T Sbjct: 1 MRPSGRQTDQLREVTLQRHFTKHAEGSVLVSFGDTQVICTASVDSGVPRFMKGEGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R +REA G+Q GR+ EI R+IGR+LR+ +D+ LG + IDCDVIQ Sbjct: 61 AEYGMLPRATGSRNQREAARGKQTGRTVEIGRLIGRSLRAAIDMELLGENTVTIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + M + +K +VAA+S G+ ++DLDY Sbjct: 121 ADGGTRTASITGAFVALSDAINGM--LAEGTLKKNPIKHNVAAVSVGIWQDTAVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST + D N V+ +G VE+QG+AE F D AML+LA+ DL ++Q ++ Sbjct: 179 EDSTAETDLNVVLASNGGFVEIQGTAEGEPFMPDQLKAMLDLAEKGGRDLFEIQNRALT 237 >gi|120612226|ref|YP_971904.1| ribonuclease PH [Acidovorax citrulli AAC00-1] gi|120590690|gb|ABM34130.1| RNAse PH [Acidovorax citrulli AAC00-1] Length = 253 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR + +R + +TR + +AEGS LV+FG T +L TA++EE+VP R + GW+TA Sbjct: 12 RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTA 71 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA Sbjct: 72 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQA 131 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA HD + + + K S + +AA+S G++ G P++DL+Y E Sbjct: 132 DGGTRTAAITGAWVAAHDAVSALLE-GGKIAASPI-TAPLAAVSVGIVQGTPLLDLEYTE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D D N VM D G VEVQG+AE F++ +L+LA + LI LQ+ +S Sbjct: 190 DVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIALQRQALS 247 >gi|90407865|ref|ZP_01216041.1| putative ribonuclease PH [Psychromonas sp. CNPT3] gi|90311040|gb|EAS39149.1| putative ribonuclease PH [Psychromonas sp. CNPT3] Length = 239 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 120/241 (49%), Positives = 157/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q REI +TR + YAEGS L++ G+T +L A++ + VP +++ GW+T Sbjct: 1 MRPSKRTPEQNREIKITRNFTDYAEGSVLIEIGNTKVLCNASVSDSVPRFLKGKGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA G+QGGR+ EIQR+I R+LR+ VDL A G I +DCDVIQ Sbjct: 61 AEYAMLPRATHTRNQREAAKGKQGGRTLEIQRLIARSLRAAVDLDAFGENMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +AL D L M K + S LK +AA+S G+ P+ DLDY Sbjct: 121 ADGGTRTASITGACIALADALNWMVK-EGKIKKSP-LKQMIAAVSVGIYKDTPVCDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D N VMT+ G ++E+QG+AE FS + AML+LAK I LI QK ++ Sbjct: 179 EDSNAQTDMNVVMTEDGGMIEIQGTAEDGAFSHEQLLAMLSLAKGGIDKLIVEQKKALTG 238 Query: 241 E 241 E Sbjct: 239 E 239 >gi|72162764|ref|YP_290421.1| ribonuclease PH [Thermobifida fusca YX] gi|71916496|gb|AAZ56398.1| RNAse PH [Thermobifida fusca YX] Length = 239 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 163/239 (68%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R + +TR ++AEGS L++FG+T +L AT+EE VP W R T GW+TA Sbjct: 3 RPDGRTPNQLRPVRITRNWLRHAEGSALIEFGETRVLCAATVEEGVPRWRRGTGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD A+G I +DCDV+QA Sbjct: 63 EYAMLPRATDTRSARESVKGKIGGRTHEISRLIGRSLRAVVDFKAMGEYTITLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VAL D ++++ + L + L G VAA+S G++ G P +DL+Y Sbjct: 123 DGGTRTAAITGAYVALVDAVRYLR---KQLDLKTNPLTGSVAAVSVGIVQGQPRLDLNYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N V+T +G +E+QG+AE A F + +L+LA A+L ++QK +S Sbjct: 180 EDSVAETDMNVVVTGTGEFIEIQGTAENAPFDRKLLDTLLDLAVAGCAELTEIQKKALS 238 >gi|89052697|ref|YP_508148.1| ribonuclease PH [Jannaschia sp. CCS1] gi|88862246|gb|ABD53123.1| RNAse PH [Jannaschia sp. CCS1] Length = 209 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 109/206 (52%), Positives = 154/206 (74%), Gaps = 2/206 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 +++ GDTH+L TATLE +VP +++N+ GW+TAEYGMLPR+T R++REA +G+Q GR+Q Sbjct: 1 MIRCGDTHVLCTATLEARVPPFLKNSGLGWVTAEYGMLPRATHTRMRREAAAGKQSGRTQ 60 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+IGR+LR+ +D SALG RQI +DCDVIQADGGTR A+ITG WVAL + + Sbjct: 61 EIQRLIGRSLRAGIDRSALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKL--LK 118 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 + ++ + H+AA+SCG+ G P++DLDY EDS D NF+MT +G +VE+Q SAE Sbjct: 119 SGEIVTDPIVDHIAAVSCGIYAGQPVLDLDYPEDSEAGTDGNFIMTGAGQVVELQASAEG 178 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQ 234 ATFS+D F + +LA+ +A+L++ Q Sbjct: 179 ATFSRDEFNELYSLAEKGVAELVQAQ 204 >gi|42524118|ref|NP_969498.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100] gi|61215946|sp|Q6MJR9|RNPH_BDEBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|39576326|emb|CAE80491.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100] Length = 243 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 159/238 (66%), Gaps = 4/238 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +Q+R I +T VS+YAEGS +V+FG T +L TAT E K P W+ T GWIT Sbjct: 1 MRADGRLFDQLRNIKITPNVSEYAEGSAIVEFGRTKVLCTATYESKAPSWLLGTGAGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++R+ GGR+QEI R+IGR+LR+ VDL LG +QIIIDCDV+ Sbjct: 61 AEYGMLPRSTHTRIRRD--KSMTGGRTQEISRLIGRSLRAAVDLKQLGEKQIIIDCDVLN 118 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TG +VAL L+ + S L L +V+AIS G+ G ++DL+Y Sbjct: 119 ADGGTRTASVTGGFVALALALKKLHAVSEIKTLP--LINYVSAISVGLHEGQILLDLNYD 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS I D NFVMTD G VEVQG+AE F++D F M+++A+ +L Q V+ Sbjct: 177 EDSAIGTDMNFVMTDKGQFVEVQGTAEHVPFTRDQLFKMMDVAEKGCRELFIHQASVM 234 >gi|39996894|ref|NP_952845.1| ribonuclease PH [Geobacter sulfurreducens PCA] gi|61215993|sp|Q74C79|RNPH_GEOSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|39983782|gb|AAR35172.1| ribonuclease PH [Geobacter sulfurreducens PCA] gi|307634928|gb|ADI84630.2| ribonuclease PH [Geobacter sulfurreducens KN400] Length = 238 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +R I +TR+ K+AEGS LV+FGDT +L TA++EE VP ++R GW+T Sbjct: 1 MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASVEESVPPFLRGKGGGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GGR+ EIQR+IGR+LR+V DL+ LG R ++IDCDV+Q Sbjct: 61 AEYSMLPRATHTRSPREAAKGKLGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D Q + S + ++ VAA+S G++ G ++DL+Y Sbjct: 121 ADGGTRTASITGAYVALVDAFQWL--VSQGTIATLPVREAVAAVSVGIVGGEVLLDLNYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD NFVMT SG VEVQG+AE F+ M +LA I L+ +Q++V+ Sbjct: 179 EDSRADVDMNFVMTSSGRFVEVQGTAEAEPFTCAQMDDMRSLAMIGIERLMAIQQEVL 236 >gi|239994379|ref|ZP_04714903.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonas macleodii ATCC 27126] Length = 237 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R +++TR+ + +AEGS LV+FG+T +L AT+EE VP +++ GWIT Sbjct: 1 MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L +M + + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--AKGIIKTNPLKHMIAALSVGIYEGTPIADLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++EVQG+AE FS + ML + K + +L +QK ++ Sbjct: 179 EDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDEMLKIGKHGLRELFDIQKAALA 237 >gi|299772068|ref|YP_003734094.1| ribonuclease PH [Acinetobacter sp. DR1] gi|298702156|gb|ADI92721.1| ribonuclease PH [Acinetobacter sp. DR1] Length = 238 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + S K LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT +G +E+QG+AE F++ ML +A+ IA+LIK Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNDMLEMAEKGIAELIKKQQEAL 236 >gi|87200077|ref|YP_497334.1| ribonuclease PH [Novosphingobium aromaticivorans DSM 12444] gi|87135758|gb|ABD26500.1| RNAse PH [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 118/228 (51%), Positives = 158/228 (69%), Gaps = 2/228 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR IS+ +K+AEGS L+ FGDT +L TA++EE+VP ++R GW+TAEY MLPR+T Sbjct: 1 MRAISIETAFTKHAEGSVLICFGDTKVLVTASVEERVPPFLRGKGEGWVTAEYSMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+Q GR+QEIQR+IGR+LR+V DL LG RQI +DCDVIQADGGTRTAAI Sbjct: 61 HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQADGGTRTAAI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 +GAWVAL +Q + D + L VAA+SCG++ G P++DLDY EDS+ D DAN Sbjct: 121 SGAWVALRLAVQKLLDSGAIKE--DPLTEKVAAVSCGIVNGQPVLDLDYIEDSSADADAN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 FV+ + G I E Q +AE AT+ ++ +L LA+ A++ Q+ + Sbjct: 179 FVLIEGGKIAEAQATAEGATYDEEGLLRLLRLARMGCAEIFAAQEKAV 226 >gi|227354797|ref|ZP_03839214.1| ribonuclease PH [Proteus mirabilis ATCC 29906] gi|227165115|gb|EEI49946.1| ribonuclease PH [Proteus mirabilis ATCC 29906] Length = 251 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ +Q+R I++TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 14 MRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ Sbjct: 74 AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L M K + S LK VAA+S G++ G P+ DL+Y Sbjct: 134 ADGGTRTASISGACVALVDALNKMV-AEGKLKKSP-LKSMVAAVSVGIVDGQPLCDLEYV 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM D G ++EVQG+AE A FS + A+L LAK + + + QK+ + Sbjct: 192 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEAL 249 >gi|85859450|ref|YP_461652.1| ribonuclease PH [Syntrophus aciditrophicus SB] gi|123516627|sp|Q2LTS3|RNPH_SYNAS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|85722541|gb|ABC77484.1| ribonuclease PH [Syntrophus aciditrophicus SB] Length = 240 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 170/245 (69%), Gaps = 8/245 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R E+++RE+ +TR K+ +GS L++ GDT ++ TA LE KVP ++RN+ GW+T Sbjct: 1 MRKNRRHEDELREVKITRNYLKHPQGSVLIEVGDTKVICTAALEAKVPPFLRNSGKGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T R +RE+V G GGR+ EIQR+IGR+LR+V DL +LG + IDCDVIQ Sbjct: 61 AEYAMLPMATQERNQRESVRGHIGGRTHEIQRLIGRSLRAVTDLDSLGENTVYIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMED---CSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ADGGTRTA+ITG++VAL D + M++ C + ++ +V+A+S G++ G ++DL Sbjct: 121 ADGGTRTASITGSFVALVDLFRKMKEKGICE-----TMPIRDYVSAVSVGVVDGQLLLDL 175 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +Y EDS DVD N VMT +G +EVQG+AER F +D AM+ LA I L ++Q+++ Sbjct: 176 EYEEDSRADVDMNVVMTGAGEFIEVQGTAERVPFGRDRLTAMVELAGRGIRKLTEVQREI 235 Query: 238 ISNEV 242 + ++ Sbjct: 236 LGGQI 240 >gi|325294219|ref|YP_004280733.1| ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064667|gb|ADY72674.1| Ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699] Length = 235 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 165/238 (69%), Gaps = 7/238 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +T K+AEGSCL++FGDT ++ TA++EEK+P +++ T GWIT Sbjct: 2 IRNDGRKIDELRPVKITVDYIKHAEGSCLIEFGDTKVICTASVEEKIPPFLKGTGQGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ GR GR+QEIQR+IGR++RS VDL+ALG + IDCDVIQ Sbjct: 62 AEYSMLPRATATRTIRESAKGRLTGRTQEIQRLIGRSVRSTVDLTALGEITVWIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL+ L+ ++ +K VAA+S G++ G ++DL+Y Sbjct: 122 ADGGTRTASITGAFVALYRALEKIDKLD-------AVKNFVAAVSVGIVGGEYLLDLNYE 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N VM D G VE+QG+AE FS+ +L+L + I LI QK+++ Sbjct: 175 EDSIAEVDMNIVMNDVGEFVELQGTAEGKPFSRKDLEKLLSLGEKGITKLILKQKEIL 232 >gi|320010557|gb|ADW05407.1| ribonuclease PH [Streptomyces flavogriseus ATCC 33331] Length = 245 Score = 235 bits (599), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 119/238 (50%), Positives = 158/238 (66%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAAIS G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIAWAQGKKIVKHGRKPLTGTVAAISVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V T G VEVQG+AE F +D A+L+LA ADL KLQ++ ++ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRDELNALLDLATAGCADLAKLQEEALA 240 >gi|197286965|ref|YP_002152837.1| ribonuclease PH [Proteus mirabilis HI4320] gi|226736924|sp|B4F0W3|RNPH_PROMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|194684452|emb|CAR46192.1| ribonuclease PH [Proteus mirabilis HI4320] Length = 238 Score = 235 bits (599), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ +Q+R I++TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L M K + S LK VAA+S G++ G P+ DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALNKMV-TEGKLKKSP-LKSMVAAVSVGIVDGQPLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM D G ++EVQG+AE A FS + A+L LAK + + + QK+ + Sbjct: 179 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEAL 236 >gi|290477306|ref|YP_003470227.1| RNase PH [Xenorhabdus bovienii SS-2004] gi|289176660|emb|CBJ83469.1| RNase PH [Xenorhabdus bovienii SS-2004] Length = 242 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 118/237 (49%), Positives = 160/237 (67%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR Q+R I +TR +K+AEGS LV+FGDT +L A++EE +P +++ GWITA Sbjct: 7 RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQA Sbjct: 67 EYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAI+GA VAL D L + K + S +K VAA+S G++ G + DL+Y E Sbjct: 127 DGGTRTAAISGACVALVDALNKLV-ADGKLKKSP-MKSMVAAVSVGIVEGEGLCDLEYVE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS + D N VM D G ++EVQG+AE FS D ++L+LAK+ + + Q+D + Sbjct: 185 DSAAETDMNIVMMDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFAAQRDAL 241 >gi|285017590|ref|YP_003375301.1| ribonuclease ph protein [Xanthomonas albilineans GPE PC73] gi|283472808|emb|CBA15313.1| hypothetical ribonuclease ph protein [Xanthomonas albilineans] Length = 241 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 118/229 (51%), Positives = 160/229 (69%), Gaps = 4/229 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR Q+R + + R +++AEGS LV FGDT +L A+++ +VP ++R GW+TA Sbjct: 5 RPSGRTAEQLRPVRIERAFTRHAEGSVLVSFGDTRVLCNASVDNRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R +REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRATHSRSEREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VAL D + + + +L + V+ G VAA+S G+ G P++DLDY Sbjct: 125 DGGTRTAAITGAYVALVDAVNWLR---QRGELKKPVVLGAVAAVSVGIYRGVPVLDLDYA 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS D D N VM D G +E+QG+AE F +D A+L LA+ I + Sbjct: 182 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAERGIGE 230 >gi|149912896|ref|ZP_01901430.1| ribonuclease PH [Roseobacter sp. AzwK-3b] gi|149813302|gb|EDM73128.1| ribonuclease PH [Roseobacter sp. AzwK-3b] Length = 210 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 111/211 (52%), Positives = 155/211 (73%), Gaps = 2/211 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 +++ GDTH+L TA+LEE+VP +++ T GW+TAEYGMLPRST +R++REA +G+QGGR+ Sbjct: 1 MIRVGDTHVLCTASLEERVPPFMKGTGLGWVTAEYGMLPRSTSSRMRREATAGKQGGRTV 60 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+IGR+LR+ VD ALG RQI +DCDVIQADGGTR AAITG W+AL + + Sbjct: 61 EIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGGTRCAAITGGWIALRLAVNKLMKAG 120 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 + +S L VAA+SCG+ G P++DLDY EDS VD NF+MT S ++EVQ SAE Sbjct: 121 DV--ISDPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGNFIMTGSKRLIEVQMSAEG 178 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +T+S+D +++LA+ +A+L+ QK ++ Sbjct: 179 STYSRDQMNLLMDLAEKGVAELVAAQKAAVN 209 >gi|258592582|emb|CBE68891.1| RNase PH [NC10 bacterium 'Dutch sediment'] Length = 258 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 117/242 (48%), Positives = 166/242 (68%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + + R ++AEGS L++ G+T +L TAT+EEKVP ++R T GW+T Sbjct: 14 VRSDGRKIDEIRPVKVDRGYLRHAEGSLLIEVGETRVLCTATVEEKVPPFLRATGQGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R RE+ +GR GR+ EIQR+IGR+LR+V+DL+ LG R ++IDCDVIQ Sbjct: 74 AEYGMLPRATKTRTPRESATGRASGRTFEIQRLIGRSLRAVIDLTRLGERTVLIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT AITGA+VA+ D L +++ N +LK VA IS G + G ++DL+Y Sbjct: 134 ADGGTRTTAITGAFVAMADALSRLQE--NGQLKGPLLKDFVAGISIGYVDGELLLDLNYA 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DVD N VMT + VEVQG+AE + + ML+LA I L+ LQ+ ++ Sbjct: 192 EDSMADVDMNVVMTGARKFVEVQGTAEEVPYDKAQLDRMLDLATRGIDQLVDLQRQLLGT 251 Query: 241 EV 242 ++ Sbjct: 252 DI 253 >gi|304317496|ref|YP_003852641.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778998|gb|ADL69557.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 259 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 115/240 (47%), Positives = 167/240 (69%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I +TR ++YAEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RVDGRDPKSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+T R +RE+ G+Q GR+ EIQR+IGRALR+VVDL ALG + I IDCDVIQA Sbjct: 63 EYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTA+ITG++VAL D + + K +S++ +K VAA+S G++ ++DL Y Sbjct: 123 DGGTRTASITGSFVALVDAMNKL---LQKGVISKMPIKSFVAAVSVGIVGDNKLLDLCYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED VD N VMTD G +E+QG+ E FS+D F +L LA+D + +I++QK+ + + Sbjct: 180 EDCNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKDDFTELLGLAEDGLNKIIEIQKEALGD 239 >gi|330991184|ref|ZP_08315137.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1] gi|329761770|gb|EGG78261.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1] Length = 253 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 114/238 (47%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R + + +++AEGS L++ G T +L A++E +VP ++R GW+T Sbjct: 12 MRPSGRATDALRPVFIQTGFARHAEGSALIRMGGTEVLCAASVETRVPSFLRGKGQGWVT 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA GRQ GR+QEIQR+I R+LR+V DL ALG I +DCDV+ Sbjct: 72 AEYGMLPRATHSRGPREAAKGRQSGRTQEIQRLIARSLRAVTDLRALGEISITVDCDVLN 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITGAWVAL L+ + + LKG VAA+SCG+ ++DLDY Sbjct: 132 ADGGTRCAAITGAWVALRLALETLVRAGTLPAVP--LKGQVAAVSCGLTQEGAVLDLDYA 189 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST D+NFV+T G IVE+QG+AE+ F++ F ++ LA+ A+L ++Q + Sbjct: 190 EDSTARADSNFVLTADGGIVEIQGTAEQDPFTEAQFNTLMRLARTGTAELFRIQTATV 247 >gi|317050112|ref|YP_004117760.1| ribonuclease PH [Pantoea sp. At-9b] gi|316951729|gb|ADU71204.1| ribonuclease PH [Pantoea sp. At-9b] Length = 238 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FG+T +L TAT++E VP +++ GW+T Sbjct: 1 MRPAGRHTNQVRPVTLTRHYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLQALGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + ++ S LKG VAAIS G++ G DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VADGKLKSSPLKGMVAAISVGIVEGEARCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I LI QK +++ Sbjct: 179 EDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLELLALARGGIEQLIVAQKAALAD 238 >gi|149908596|ref|ZP_01897258.1| putative ribonuclease PH [Moritella sp. PE36] gi|149808430|gb|EDM68367.1| putative ribonuclease PH [Moritella sp. PE36] Length = 243 Score = 234 bits (597), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 121/242 (50%), Positives = 162/242 (66%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q+R +++TR + AEGS LV+FG T +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPSQRTLGQVRPVTITRNFTANAEGSVLVEFGGTKVLCTATVEKGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+ EIQR+I R+LR+ +DL +LG IIIDCDVIQ Sbjct: 61 AEYGMLPRSTHKRMHREAARGQQTGRTMEIQRLIARSLRACIDLESLGEHTIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D ++ + K +S + K +AA+S G+ G + DLDY Sbjct: 121 ADGGTRTAAITGACVALADAIEFLIR-KGKLTVSPI-KFMIAAVSVGIYKGEAVCDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT++G +E+QG+AE FS + ML LAKD I +I QK + + Sbjct: 179 EDSDAETDMNVVMTETGKFIEIQGTAEGVPFSHEEMLDMLALAKDGIEMIIIEQKKALGD 238 Query: 241 EV 242 + Sbjct: 239 SL 240 >gi|220932375|ref|YP_002509283.1| ribonuclease PH [Halothermothrix orenii H 168] gi|219993685|gb|ACL70288.1| ribonuclease PH [Halothermothrix orenii H 168] Length = 246 Score = 234 bits (597), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 113/235 (48%), Positives = 163/235 (69%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+ +Q+R++ ++R+ +KYAEGS L++ GDT ++ TA++EE VP ++R GW+T Sbjct: 7 LRVDGRKNDQLRDVKISRQYTKYAEGSVLIETGDTKVICTASVEESVPPFLRGQNTGWLT 66 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST +R RE GR GR+QEIQR+IGR+LR+VVDL LG R I +DCDVIQ Sbjct: 67 AEYSLLPRSTHSRTIREVARGRLSGRTQEIQRLIGRSLRAVVDLGKLGERTIWVDCDVIQ 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + ++ L +AA S G++ G ++DL Y Sbjct: 127 ADGGTRTASITGAYVALVDAINYL--IEEGVLEESPLNSFMAATSVGVVDGEMLLDLCYE 184 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED VD N VMT+ G ++E+QG+AE+ FS+D +++LA+ I +L+ QK Sbjct: 185 EDFQAQVDMNIVMTEDGRVIEIQGTAEKFPFSRDQMNTLMDLAEKGIRELVSFQK 239 >gi|302390319|ref|YP_003826140.1| RNAse PH [Thermosediminibacter oceani DSM 16646] gi|302200947|gb|ADL08517.1| RNAse PH [Thermosediminibacter oceani DSM 16646] Length = 252 Score = 234 bits (597), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 4/241 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +++R +++ RR +KYAEGS L++ GDT ++ TAT++EKVP ++R GW+TA Sbjct: 3 RADGREFDEIRPVNIIRRFNKYAEGSVLIEAGDTKVICTATVDEKVPPFLRGKGQGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE++ + GR+ EIQR+IGRA+RSVVDL+ALG R + +DCDVIQA Sbjct: 63 EYSMLPRATEIRNIRESL--KPSGRTMEIQRLIGRAMRSVVDLAALGERTVWLDCDVIQA 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++++D N + VAA+S G++ G ++DL++ E Sbjct: 121 DGGTRTAAITGAFVALVDAFKYLKD--NGIIEVIPVNSFVAAVSVGIVDGEKLLDLNFEE 178 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D VD N VMTD G +VEVQG+ E F++ ML+LA+ + +LI +QK V+S+ Sbjct: 179 DCRAQVDMNVVMTDKGQLVEVQGTGEAFPFTRQDLNDMLDLAQKGVFELISIQKQVLSDV 238 Query: 242 V 242 V Sbjct: 239 V 239 >gi|163856581|ref|YP_001630879.1| ribonuclease PH [Bordetella petrii DSM 12804] gi|163260309|emb|CAP42611.1| ribonuclease PH [Bordetella petrii] Length = 246 Score = 234 bits (596), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 123/242 (50%), Positives = 168/242 (69%), Gaps = 10/242 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R SL R ++YAEGS LV+ G+TH+L TA++ +KVP +++ GW+TA Sbjct: 11 RPSGRAVDQLRPFSLQRGYTRYAEGSVLVRAGNTHVLCTASVLDKVPPFLKGRGEGWVTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA Sbjct: 71 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQA 130 Query: 122 DGGTRTAAITGAWVALHD----CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 DGGTR A+ITGAWVA D +Q + +N ++ VAA+S GM+ G P++DL Sbjct: 131 DGGTRCASITGAWVAAADAVALLMQRGDLAANP------IRDAVAAVSVGMVAGRPVLDL 184 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DY EDS D D N VMT +G VEVQG+ E ATF++ AML LA+ IA L++ Q++ Sbjct: 185 DYQEDSACDADVNVVMTGAGAFVEVQGTGEGATFARSELDAMLGLAEQGIAQLVRAQREA 244 Query: 238 IS 239 ++ Sbjct: 245 LA 246 >gi|325570405|ref|ZP_08146182.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC 12755] gi|325156615|gb|EGC68792.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC 12755] Length = 450 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E +R +++ V K+ EGS ++ FGDT ++ +AT+E++VP ++R+T GWIT Sbjct: 1 MRHDGRKETMLRPVNIQTNVYKHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDV+Q Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + + +K +K H+AAIS G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ VD N VMT+SG VE+QG+ E ATF ML K I +LI QK+ + Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237 >gi|262038518|ref|ZP_06011887.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264] gi|261747387|gb|EEY34857.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264] Length = 230 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 112/234 (47%), Positives = 161/234 (68%), Gaps = 5/234 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR++ R+ ++MRE+ +T+ + EGS L++FG+T ++ AT+EEKVP ++R T GWIT Sbjct: 1 MRVN-RKNDEMREVKVTKNYIMHPEGSVLIEFGNTKVICNATVEEKVPPFLRGTNSGWIT 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T NRV+REA GR GR+ EIQR+IGRALR+ V+L LG R +IIDCDVIQ Sbjct: 60 AEYSMLPRATNNRVQREANKGRLSGRTMEIQRLIGRALRAAVNLEKLGERTVIIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITG ++AL ++ + D K +L+++ + VAA+S G + ++DL+Y Sbjct: 120 ADGGTRTASITGGYLALELAIEKLID---KGKLNEIPINSRVAAVSVGKIKNEILLDLEY 176 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ED DVD N +M D G +E+QG+ E ATF+Q+ + ++K L L Sbjct: 177 EEDFRADVDMNIIMNDKGEFIELQGTGEEATFTQEELLKFIEISKKGFEKLFNL 230 >gi|238918030|ref|YP_002931544.1| ribonuclease PH, [Edwardsiella ictaluri 93-146] gi|259494120|sp|C5B9C9|RNPH_EDWI9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|238867598|gb|ACR67309.1| ribonuclease PH, putative [Edwardsiella ictaluri 93-146] Length = 238 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR Q+R + LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T Sbjct: 1 MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + K + S LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALGALV-AAGKLKESP-LKGMVAAVSVGIVAGGAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+D I +I+ QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQKTALEQ 238 >gi|256372516|ref|YP_003110340.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331] gi|256009100|gb|ACU54667.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331] Length = 238 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/231 (49%), Positives = 155/231 (67%), Gaps = 2/231 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++R +++T ++ A GS L++ G T +L T +LEE+VP W+R GW++A Sbjct: 4 RPVGRGAAELRPVAITPDFTEMAPGSVLMRMGRTAVLCTVSLEERVPAWLRGQGRGWVSA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R REAV GRQ GR+ EIQR+IGRALRSVVDL LG Q+++DCDV+QA Sbjct: 64 EYALLPGSTPTRTAREAVRGRQQGRTVEIQRLIGRALRSVVDLERLGEHQLVVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG ++AL L+ + L G +AA+S G++ G P++DLDY E Sbjct: 124 DGGTRTAAITGGFLALERALERL--AEGGLVQPAALTGRLAAVSVGVVDGEPLLDLDYDE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 DS DVD N VMTD G VEVQG+AE A F++ +L LA+ I +L++ Sbjct: 182 DSRADVDMNVVMTDGGRYVEVQGAAEGAPFAKATLVELLKLAERGIGELLE 232 >gi|114798422|ref|YP_761988.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444] gi|114738596|gb|ABI76721.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444] Length = 241 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR +++R ISL V++YAEGSCL KFG TH+L TA+ E+ VP W++ GW+T Sbjct: 5 VRPTGRAFDELRPISLETSVTRYAEGSCLAKFGHTHVLCTASWEKGVPGWLKGKGEGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LRSVVDL ALG I IDCDVIQ Sbjct: 65 GEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRSVVDLKALGENTITIDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL ++++ + S + K AAIS G+ +P++D+DY Sbjct: 125 ADGGTRTASITGGFVALAMACRYLQ-TEGVIKASPIQK-QAAAISVGLFQNHPVLDVDYP 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM+ G +EVQG+ E S+ M+ LA+ +L Q+ I Sbjct: 183 EDSEGEADMNVVMSSDGGFIEVQGTGESRPMSRTELDEMMRLAEKGCNELFAAQRAAI 240 >gi|15603741|ref|NP_246815.1| ribonuclease PH [Pasteurella multocida subsp. multocida str. Pm70] gi|21759412|sp|Q9CJW5|RNPH_PASMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|12722306|gb|AAK03960.1| Rph [Pasteurella multocida subsp. multocida str. Pm70] Length = 238 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/213 (54%), Positives = 151/213 (70%), Gaps = 2/213 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ R I +TR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPNERANNQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N +K VAAIS G++ G P+ DL+Y Sbjct: 121 ADGGTRTASITGACVALCDAIHGL--VENGTLKVNPIKSLVAAISVGIVEGVPVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 EDS + D N VM + G ++EVQG+AE FS Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSH 211 >gi|210632429|ref|ZP_03297357.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279] gi|210159524|gb|EEA90495.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279] Length = 244 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 118/234 (50%), Positives = 159/234 (67%), Gaps = 4/234 (1%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + MR ++LTR V K A GSCLV+FGDT +L AT+EE VP W + ++ GW+TAEY M Sbjct: 12 RAADAMRPVNLTRDVMKNALGSCLVEFGDTKVLCAATIEEGVPGWRKASRQGWVTAEYAM 71 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R +RE + + GRS EI+R+IGR+LR+VV++ ALG + +DCDVIQADGGT Sbjct: 72 LPASTNRRTRRE--TSNRKGRSMEIERLIGRSLRTVVNMKALGEHTVTVDCDVIQADGGT 129 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGAWVALHD L + +L L G VAA+S G++ G ++DLDY EDS Sbjct: 130 RTASITGAWVALHDALMAWVEAGKISRLP--LTGQVAAVSMGLVDGCELLDLDYAEDSHA 187 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +VD N V TD+G I+E+QG+ E+ F + +L+L + I LI LQ +V + Sbjct: 188 EVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEVTA 241 >gi|116626750|ref|YP_828906.1| ribonuclease PH [Candidatus Solibacter usitatus Ellin6076] gi|122251374|sp|Q01NZ9|RNPH_SOLUE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|116229912|gb|ABJ88621.1| RNAse PH [Candidatus Solibacter usitatus Ellin6076] Length = 238 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 114/238 (47%), Positives = 156/238 (65%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R + +T AEGS L+K G+TH+L AT+E+ VP ++RNT GW+T Sbjct: 1 MRTDNRTAGQLRPVQITTGCLMTAEGSALIKVGNTHVLCAATIEDTVPPFLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE GR GR+ EIQR+IGR++RS VD+S+ G R +IIDCDVIQ Sbjct: 61 AEYSMLPRATAKRTPREVTKGRPSGRTHEIQRLIGRSMRSAVDMSSFGERTLIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ + + + + ++ +VAA S G++ G P++DL Y Sbjct: 121 ADGGTRTASITGAFVAMALAFRQL--IEYRALKANPIRDYVAATSVGLVGGIPMLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD N VMT G VEVQ +AE + F + LA+ IA L+++QK++I Sbjct: 179 EDSQADVDMNVVMTGGGKFVEVQATAEHSAFDDAQMAELTELARTGIAQLVRMQKEII 236 >gi|332289145|ref|YP_004419997.1| ribonuclease PH [Gallibacterium anatis UMN179] gi|330432041|gb|AEC17100.1| ribonuclease PH [Gallibacterium anatis UMN179] Length = 239 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 125/242 (51%), Positives = 169/242 (69%), Gaps = 4/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R + MR I +TR +K+AEGS L++FGDT +L AT+EE VP +++ GWIT Sbjct: 1 MRPNNRDNHAMRPIKITRHYTKHAEGSVLIEFGDTKVLCNATVEETVPRFLKGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+ EIQR+IGR+LR++VDL+ LG R I +DCDVIQ Sbjct: 61 AEYGMLPRATNVRTQREAAKGKQSGRTMEIQRLIGRSLRAMVDLTLLGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTAAI+G+ VALHD +Q + D K + Q +K VAA+S G++ + DL+Y Sbjct: 121 ADGGTRTAAISGSAVALHDAIQTLLD---KGLIKQNPIKNLVAAVSVGIVEQQQLCDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMTD G ++EVQG+AE FS D A+L+LAK IA + + QK + Sbjct: 178 VEDSNAETDMNVVMTDDGRMIEVQGTAEGEPFSHDELLALLDLAKQGIAQINQAQKAALQ 237 Query: 240 NE 241 ++ Sbjct: 238 DK 239 >gi|311106536|ref|YP_003979389.1| ribonuclease PH [Achromobacter xylosoxidans A8] gi|310761225|gb|ADP16674.1| ribonuclease PH [Achromobacter xylosoxidans A8] Length = 244 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 118/239 (49%), Positives = 164/239 (68%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +++R SL R ++YAEGS LVK G+TH+L TA++ EKVP +++ GW+TA Sbjct: 9 RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA Sbjct: 69 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTR A+ITGAWVA + + + + L+ ++ VAA+S G++ G ++DLDY Sbjct: 129 DGGTRCASITGAWVAASEAIALL---MKRGDLAVNPIRDAVAAVSVGLVQGRAVLDLDYE 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N +MT G VEVQG+ E ATF++ ML LA+ IA L++ Q+ ++ Sbjct: 186 EDSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDTMLVLAEGGIAGLVREQRAALT 244 >gi|325981263|ref|YP_004293665.1| ribonuclease PH [Nitrosomonas sp. AL212] gi|325530782|gb|ADZ25503.1| ribonuclease PH [Nitrosomonas sp. AL212] Length = 240 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R Q+R +++ R +K+A+GS L++ GDT ++ TA++ E+VP ++R GW+T Sbjct: 2 IRSHQRTPAQIRPVNIIRHYTKHADGSVLIECGDTKVICTASISEQVPPFLRGQGQGWLT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R++REA G+Q GR+ EIQR+IGRALR+ VDL LG R I +DCDVIQ Sbjct: 62 AEYGMLPGSTNTRMQREAAKGKQSGRTMEIQRLIGRALRAAVDLKKLGERTIQLDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD ++ + + + + HVAAIS G+ G ++DLDY Sbjct: 122 ADGGTRTASITGAFVALHDAIEKL--IYQQLIETSPITDHVAAISVGIHQGVAMLDLDYV 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ D D N VMT + I+EVQG+AE F++ ML+LA+ I +LI +Q+ V+ Sbjct: 180 EDSSCDTDMNVVMTGNLGIIEVQGTAEGNAFNRKELDTMLDLAQQGIQELITIQRKVL 237 >gi|262377117|ref|ZP_06070342.1| ribonuclease PH [Acinetobacter lwoffii SH145] gi|262307855|gb|EEY88993.1| ribonuclease PH [Acinetobacter lwoffii SH145] Length = 238 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASVDSSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRS+VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRSMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + K LKG VAA+S G+ ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LERKKIKHDPLKGLVAAVSVGIFKDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT +G +E+QG+AE F++ AML +A+ I +L+K Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIQELVKKQQEAL 236 >gi|304310165|ref|YP_003809763.1| Ribonuclease PH [gamma proteobacterium HdN1] gi|301795898|emb|CBL44099.1| Ribonuclease PH [gamma proteobacterium HdN1] Length = 238 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 119/240 (49%), Positives = 166/240 (69%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ ++R+I++TR + +AEGS LV+FG+T ++ TA+ E VP +++ T GW+T Sbjct: 1 MRPSGRKPEELRKINITRDYTCHAEGSVLVEFGNTKVICTASATEGVPRFLKGTGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHDRMDREASRGKQGGRTLEIQRLIARSLRAAVDLKLLGENTIYVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITG VAL D L + K + Q L+ +A++S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGGCVALVDALSFL---LKKGTIKQDPLQRLIASVSVGIYKGVPVLDLDY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT G +VEVQG+AE F+++ AM+ LA+ I +L LQ+ ++ Sbjct: 178 PEDSKAETDMNVVMTQHGGLVEVQGTAEAEPFTREQMNAMMELAEKGIGELFLLQQKALN 237 >gi|255019644|ref|ZP_05291723.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756] gi|254970867|gb|EET28350.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756] Length = 241 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 124/234 (52%), Positives = 155/234 (66%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +R + + R +KYAEGS L+ GDT +L TA++E+KVP +++ GW+TA Sbjct: 3 RPSGRDAQTLRPVEIIRPFTKYAEGSVLIACGDTRVLCTASIEDKVPPFLKGQGRGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R+ REA G+ GGR+ EIQR+IGR+LR+ VDL ALG R + IDCDV+QA Sbjct: 63 EYGMLPRSTQERMPREAAKGKIGGRTHEIQRLIGRSLRAAVDLEALGERTVWIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA +AL D LQ + + VAA+S G+ I+DLDY E Sbjct: 123 DGGTRTASITGACIALADALQGL--LQRGVLTHNPWRHWVAAVSVGIREDEAILDLDYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DST +VD N VMTD G VEVQG+AE A FS ML LA+ I LI QK Sbjct: 181 DSTAEVDMNVVMTDDGRFVEVQGTAEGAAFSAARMADMLLLARRGIDRLIARQK 234 >gi|284008817|emb|CBA75581.1| ribonuclease PH [Arsenophonus nasoniae] Length = 237 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R+ +Q+R I +TR+ +K+AEGS L++FGDT +L AT++E VP +++ GWIT Sbjct: 1 MRPENREADQVRPIKITRQYTKHAEGSVLIEFGDTKVLCNATIDEGVPRFLKGQSQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNIREAAKGKQTGRTMEIQRLIARSLRAAVDLKQLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GA VAL D L M K + S LK VAA+S G++ G PI DL+Y Sbjct: 121 ADGGTRTAAISGACVALTDALNKMV-AEGKLKQSP-LKSMVAAVSVGIVDGKPICDLEYS 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM D+G ++E+QG+AE FS + ++L+LAK+ + + QK+ + Sbjct: 179 EDSVAETDMNVVMMDNGKMIEIQGTAEGEPFSHEELLSLLSLAKNGLQTIFTAQKEAL 236 >gi|258516735|ref|YP_003192957.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771] gi|257780440|gb|ACV64334.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771] Length = 244 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 119/241 (49%), Positives = 163/241 (67%), Gaps = 8/241 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++MR++ +TR +KYAEGS L++ GDTH+L TAT+E+KVP ++R GW+TA Sbjct: 3 RVDGRKPDEMRQVRMTRNFNKYAEGSVLIEVGDTHVLCTATVEDKVPPFLRGANKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE G+ GR+ EIQR+IGRALRSVV+L ALG R +++DCDV+QA Sbjct: 63 EYAMLPRATDLRTGRE--RGKVSGRTMEIQRLIGRALRSVVNLEALGERTVLVDCDVLQA 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTA+ITGA+VA+ D L + KF +K +AA S G + ++DL Y Sbjct: 121 DGGTRTASITGAFVAMTDALYKLAVNGQIKKFP----IKEFIAATSVGRVNNEMVLDLCY 176 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT VE+QG+ E ATFS+ ++L+LA I LI Q +V+ Sbjct: 177 KEDSAAEVDMNIVMTGGDRFVEIQGTGEEATFSRAEVNSLLDLAAGGIKSLIAFQSEVLG 236 Query: 240 N 240 + Sbjct: 237 S 237 >gi|206889521|ref|YP_002249186.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347] gi|226736948|sp|B5YFY8|RNPH_THEYD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|206741459|gb|ACI20516.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347] Length = 236 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 113/233 (48%), Positives = 163/233 (69%), Gaps = 2/233 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +++R I + + K A+GS L++ G+T ++ TA++E KVP ++++ K GWIT Sbjct: 1 MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTASIENKVPPFLKDQKKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ RE+ SGR GGR+ EIQR+IGR LR+VVDL LG R I IDCDVI+ Sbjct: 61 AEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDCDVIE 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++AL + ++ + +K +AAIS G++ G P +DL Y Sbjct: 121 ADGGTRTASITGGYIALVEAVKKAMNAG--MITENPIKDSIAAISVGIVLGEPRLDLCYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS +VD N VMT SG +E+QG+AE FS+++ +L+LA+ I ++I++ Sbjct: 179 EDSQAEVDMNIVMTGSGKFIEIQGTAEIYPFSKENLLQLLSLAEKGIREIIRV 231 >gi|332141636|ref|YP_004427374.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype'] gi|332143438|ref|YP_004429176.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype'] gi|226736881|sp|B4S201|RNPH_ALTMD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|327551658|gb|AEA98376.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype'] gi|327553460|gb|AEB00179.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype'] Length = 237 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R +++TR+ + +AEGS LV+FG+T +L AT+EE VP +++ GW+T Sbjct: 1 MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDVIQ Sbjct: 61 AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L +M S + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--SKGIIKTNPLKHMIAALSVGIYEGTPIADLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++EVQG+AE FS + +L + K + +L +QK ++ Sbjct: 179 EDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDELLKIGKHGLRELFDIQKAALA 237 >gi|169831661|ref|YP_001717643.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C] gi|226736902|sp|B1I4W9|RNPH_DESAP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|169638505|gb|ACA60011.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C] Length = 261 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 118/242 (48%), Positives = 165/242 (68%), Gaps = 6/242 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR QMR + +TR +KYAEGS L++ GDT ++ TA+++ +VP +++ GW+T Sbjct: 2 IRVDGRAPAQMRPVYITRHYNKYAEGSALIEVGDTRVICTASIDNRVPTFLKGAGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AE+GMLPR+TG R RE+V G GGRS EIQR+IGR+LR+VVDL ALG R +I+DCDVIQ Sbjct: 62 AEFGMLPRATGVRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTAAITG +VAL D +Q + E + + + +VAA S G+ G ++DL Sbjct: 122 ADGGTRTAAITGGFVALVDAMQTLVTEGVTPRLPVLD----YVAATSVGLFEGEAVLDLC 177 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + EDS +VD N VMT +G VEVQG+ E TF + +L+LA I L++ Q+ V+ Sbjct: 178 FAEDSAAEVDFNVVMTGTGRFVEVQGTGEGTTFERADVDRLLDLAVVGIRSLVEQQRAVL 237 Query: 239 SN 240 + Sbjct: 238 GS 239 >gi|190575702|ref|YP_001973547.1| ribonuclease PH [Stenotrophomonas maltophilia K279a] gi|226736944|sp|B2FT17|RNPH_STRMK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|190013624|emb|CAQ47259.1| putative ribonuclease PH [Stenotrophomonas maltophilia K279a] Length = 241 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/228 (51%), Positives = 159/228 (69%), Gaps = 2/228 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R + + R +++AEGS LV FG+T +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + +L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMK-RGDIKRNPIL-GAVAAVSVGVYRGTPVLDLDYAE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 DS D D N VM D G +E+QG+AE F +D A+L LA+ + + Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVGE 230 >gi|61215919|sp|Q6FFX5|RNPH_ACIAD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase Length = 238 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL R +Q+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTAAITGA VAL D + + + K ++ Q LKG VAAIS G+ ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALIDAMNVLLE---KKKIKQDPLKGLVAAISVGIYQDEVLLDLCY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT +G +E+QG+AE F++ AML +A+ I +LIK Q+ + Sbjct: 178 EEDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQAL 236 >gi|114564986|ref|YP_752500.1| ribonuclease PH [Shewanella frigidimarina NCIMB 400] gi|122298386|sp|Q07WF3|RNPH_SHEFN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|114336279|gb|ABI73661.1| RNAse PH [Shewanella frigidimarina NCIMB 400] Length = 237 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR + +AEGS LV+FGDT +L TA+ E VP +++ GW+T Sbjct: 1 MRPSNRTPAQTRPITITRSFTAHAEGSVLVEFGDTKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ LG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKLLGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGIIKANPLKFLIAAVSVGIYKGEAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + +L LAK+ I +++ +QK +S Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLVLAKNSIREIVDVQKAALS 237 >gi|302037201|ref|YP_003797523.1| ribonuclease PH [Candidatus Nitrospira defluvii] gi|300605265|emb|CBK41598.1| Ribonuclease PH [Candidatus Nitrospira defluvii] Length = 247 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 119/241 (49%), Positives = 168/241 (69%), Gaps = 6/241 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R + +TR +K+AEGS L++ GDT ++ TA++EEKVP +++ GW+TA Sbjct: 9 RIDGRRRDQIRPVKVTRNFTKHAEGSVLIEMGDTKVICTASIEEKVPPFLKGKGAGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R RE+V G+QGGR+ EIQR++GRALR+V+D LG R I IDCDVIQA Sbjct: 69 EYAMLPRATHDRSPRESVKGKQGGRTLEIQRLVGRALRAVIDTGRLGERTIWIDCDVIQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV--LKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTA+ITG+++AL D + + K L +V L ++AAIS G + G +VDL Y Sbjct: 129 DGGTRTASITGSFIALADAVGVL----RKKDLIKVNPLTDYLAAISIGKVGGQVMVDLAY 184 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT +G VEVQG+AE+ F++ L+L I +L+ LQK +I Sbjct: 185 EEDSHAEVDLNLVMTGAGQYVEVQGTAEKTPFNKKDMDEFLDLGWGAIRELVDLQKSLIG 244 Query: 240 N 240 + Sbjct: 245 S 245 >gi|33151538|ref|NP_872891.1| ribonuclease PH [Haemophilus ducreyi 35000HP] gi|61216021|sp|Q7VP10|RNPH_HAEDU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|33147758|gb|AAP95280.1| ribonuclease PH [Haemophilus ducreyi 35000HP] Length = 238 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS L++FG+T +L A++EE VP +++ + GW+T Sbjct: 1 MRPNHRENNQIRPVKITRHYTRYAEGSVLIEFGETKVLCNASIEESVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+ EIQR+I RALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYGMLPRATHSRNQREAAKGKQSGRTMEIQRLIARALRAVVDLEALGERTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + ++ + LKG VAAIS G++ + DL+Y Sbjct: 121 ADGGTRTAAITGACVALQDAIHKL--IADGVLKTNPLKGLVAAISVGIVENEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D N VM + G +VEVQG+AE FS +L+LA I L ++Q+ ++ Sbjct: 179 EDAKAETDMNVVMVEDGRLVEVQGTAEGKPFSHMELLQLLDLADQGINQLFEVQRQALA 237 >gi|257866170|ref|ZP_05645823.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30] gi|257872500|ref|ZP_05652153.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10] gi|257800104|gb|EEV29156.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30] gi|257806664|gb|EEV35486.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10] Length = 450 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E +R + + V K+ EGS ++ FGDT ++ +AT+E++VP ++R+T GW+T Sbjct: 1 MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDV+Q Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + + +K +K H+AAIS G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ VD N VMT+SG VE+QG+ E ATF ML K I +LI QK+ + Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237 >gi|288573194|ref|ZP_06391551.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568935|gb|EFC90492.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002] Length = 257 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 119/234 (50%), Positives = 160/234 (68%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR MR++S R S YAEGSCLV FG T +L TA++EEKVP ++R + GW+TA Sbjct: 10 RADGRSGYDMRKVSFQRGFSCYAEGSCLVSFGKTKVLCTASVEEKVPPFLRGSDRGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LPRST RV R+ G+ GRS EIQR++GR+LR+ VD+ +LG R I IDCDV+QA Sbjct: 70 EYSLLPRSTSTRVPRDISRGKLNGRSSEIQRLVGRSLRAAVDMESLGERTIWIDCDVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR+AA+TG +VAL D L+H+ K + S L+ +VAA+S G + G + DL Y E Sbjct: 130 DGGTRSAAVTGGFVALVDALRHLWRI-GKLK-SIPLRSYVAAVSVGKISGKLLTDLCYDE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N VM G ++E+QG+ E+ TFS+D ML+LA + +LI LQ+ Sbjct: 188 DSRAEVDMNVVMDGLGRLIEIQGTGEKDTFSRDEMNGMLDLAFRSVEELIVLQE 241 >gi|332284454|ref|YP_004416365.1| ribonuclease PH [Pusillimonas sp. T7-7] gi|330428407|gb|AEC19741.1| ribonuclease PH [Pusillimonas sp. T7-7] Length = 271 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 118/238 (49%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RLSGR +++R + + +++AEGS L+K GDTH+L A++ EKVP +++ GW+TA Sbjct: 36 RLSGRAASELRPVVIETGYTRHAEGSVLIKAGDTHVLCNASVLEKVPPFLKGKSQGWVTA 95 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL+ALG R + +DCDV+QA Sbjct: 96 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLTALGERTVQLDCDVLQA 155 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVA ++ + + Q L VAA+S G++ G ++DLDY E Sbjct: 156 DGGTRCASITGAWVAAALAVRGLVEQGVLAQ--SPLLDQVAAVSVGLVGGQALLDLDYTE 213 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D N VMT +GH VEVQG+AE TF + +L+LA+D I L+ QK ++ Sbjct: 214 DSGCGADMNIVMTGAGHFVEVQGTAEGQTFERKALDELLDLAQDGIRQLLAEQKRALA 271 >gi|254524022|ref|ZP_05136077.1| ribonuclease PH [Stenotrophomonas sp. SKA14] gi|219721613|gb|EED40138.1| ribonuclease PH [Stenotrophomonas sp. SKA14] Length = 241 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 117/223 (52%), Positives = 157/223 (70%), Gaps = 2/223 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R + + R +++AEGS LV FG+T +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + +L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMK-RGDIKRNPIL-GAVAAVSVGVYRGTPVLDLDYAE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 DS D D N VM D G +E+QG+AE F +D A+L LA+ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAE 225 >gi|253991850|ref|YP_003043206.1| ribonuclease PH [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783300|emb|CAQ86465.1| ribonuclease ph [Photorhabdus asymbiotica] Length = 237 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 119/238 (50%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R I++TR +K+AEGS LV+FGDT +L A++EE VP +++ GWIT Sbjct: 1 MRPAGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M + + K + LK VAA+S G++ DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNKMVE-AGKLK-ENPLKSMVAAVSVGIVDNEGRCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS D ++L+LAK + + Q+ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLSLAKGGLETIFAAQRTAL 236 >gi|325499450|gb|EGC97309.1| ribonuclease PH [Escherichia fergusonii ECD227] Length = 228 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 120/230 (52%), Positives = 158/230 (68%), Gaps = 2/230 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWITAEYGMLPRST Sbjct: 1 MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+QADGGTRTA+I Sbjct: 61 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TGA VAL D L + N + +KG VAA+S G++ G + DL+Y EDS + D N Sbjct: 121 TGACVALADALNKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 VVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 228 >gi|262370973|ref|ZP_06064296.1| ribonuclease PH [Acinetobacter johnsonii SH046] gi|262314049|gb|EEY95093.1| ribonuclease PH [Acinetobacter johnsonii SH046] Length = 238 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+R++++TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRTLDQLRDVTITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTAAITGA VAL D + + + K ++ Q LKG VAAIS G+ ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALIDAMNTLLE---KKKIKQDPLKGLVAAISVGIFQDEVLLDLCY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT +G +E+QG+AE F++ AML +A+ I +L+K Q+ + Sbjct: 178 EEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRVQCNAMLEMAEKGIQELVKKQQQAL 236 >gi|291278861|ref|YP_003495696.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1] gi|290753563|dbj|BAI79940.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1] Length = 238 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++MR I +T KY EGS L++FG+T ++ A++ E VP +++ T GWIT Sbjct: 1 MRSDGRKNDEMRLIKITTDYIKYPEGSVLIEFGETKVICNASITEGVPPFLKGTGTGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GR+QEI R+IGRALRSVVD+S LG R ++IDCDVIQ Sbjct: 61 AEYSMLPRATHTRNVRESVKGKLSGRTQEISRLIGRALRSVVDMSVLGERTVVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +VAL+ + + S + + + + K VAA+S G+L I+DL+Y Sbjct: 121 ADGGTRTASISGGFVALYSAFEKLVK-SGELEKNPI-KNFVAAVSVGVLNDDVILDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST VD N V TDSG I+E+QG+ E + FS+D M++ A I ++I+ QK Sbjct: 179 EDSTARVDMNVVATDSGEIIEIQGTGEESPFSRDVLNKMIDYAFIGINNIIEAQK 233 >gi|319943444|ref|ZP_08017726.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599] gi|319743259|gb|EFV95664.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599] Length = 253 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 123/245 (50%), Positives = 164/245 (66%), Gaps = 7/245 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R + RR +++AEGS LV FGDT +L TA++ + VP ++R GW+TA Sbjct: 9 RHDGRALDGLRPVRFQRRFTRHAEGSVLVSFGDTRVLCTASVLDSVPPFLRGKGQGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R I +DCDV+QA Sbjct: 69 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVTDLKRLGERTIHLDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYP--IVD 176 DGGTRTAAITGAWVAL D + + + K S L+ VAAIS G++ P ++D Sbjct: 129 DGGTRTAAITGAWVALRDAVNGLL-AAGKLT-SDPLREAVAAISVGIVALPGAAPACVLD 186 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 LDY EDS + D N VMT SG +VE+QG+AE A FS+ +L+LA I +L++LQ+ Sbjct: 187 LDYQEDSGCETDMNVVMTASGGLVEIQGTAEGAPFSRQQASELLDLAAKGIDELVRLQRA 246 Query: 237 VISNE 241 + E Sbjct: 247 ALQEE 251 >gi|189425094|ref|YP_001952271.1| ribonuclease PH [Geobacter lovleyi SZ] gi|226736912|sp|B3E3D2|RNPH_GEOLS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189421353|gb|ACD95751.1| ribonuclease PH [Geobacter lovleyi SZ] Length = 238 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 160/235 (68%), Gaps = 2/235 (0%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR + +R I++TR K+ EG+ LV+FGDT ++ TA++EE VP ++R GW+TAEY Sbjct: 5 GRGLSDLRPITMTRHFIKHPEGAVLVEFGDTRVICTASVEESVPPFLRGKGTGWVTAEYS 64 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T R REA G+Q GR+ EIQR+IGR+LR+V D++ LG R I +DCDVIQADGG Sbjct: 65 MLPRATHTRSSREAAKGKQSGRTLEIQRLIGRSLRAVTDMTKLGERTIYLDCDVIQADGG 124 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTA+ITGA+VAL D + + K LK VAA+S G++ G ++DLDY EDS+ Sbjct: 125 TRTASITGAYVALVDAVSALL-VQGKIT-GNPLKEAVAAVSVGIVDGQAVLDLDYQEDSS 182 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +VD NFVMT SG VEVQG+AE F+ + AM +LA I L Q++ ++ Sbjct: 183 AEVDMNFVMTSSGRFVEVQGTAEAEPFTLEQMDAMRSLAMTGINQLFTYQQEALA 237 >gi|50083344|ref|YP_044854.1| ribonuclease PH [Acinetobacter sp. ADP1] gi|49529320|emb|CAG67032.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter sp. ADP1] Length = 251 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL R +Q+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 14 MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 74 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTAAITGA VAL D + + + K ++ Q LKG VAAIS G+ ++DL Y Sbjct: 134 ADGGTRTAAITGAAVALIDAMNVLLE---KKKIKQDPLKGLVAAISVGIYQDEVLLDLCY 190 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT +G +E+QG+AE F++ AML +A+ I +LIK Q+ + Sbjct: 191 EEDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQAL 249 >gi|157373079|ref|YP_001481068.1| ribonuclease PH [Serratia proteamaculans 568] gi|166991086|sp|A8GLF0|RNPH_SERP5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157324843|gb|ABV43940.1| ribonuclease PH [Serratia proteamaculans 568] Length = 238 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + +N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNAL--VANGKLKANPMKGLVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS D A+L LA+ I + + QK +++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIDTIFQAQKAALAD 238 >gi|237756090|ref|ZP_04584666.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5] gi|237691740|gb|EEP60772.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5] Length = 257 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ Q+R I +TR + YAEGS L++FG+T ++ TA++E+KVP +++ T GWIT Sbjct: 1 MRPDGRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR++ R RE V G GR+ EIQR+IGR+LR+ VDL LG + I IDCDVIQ Sbjct: 61 AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHD-CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTR A+ITGA++A+ D C++ + K + LK +VAAIS G + ++DL+Y Sbjct: 121 ADGGTRVASITGAFIAVADACIKLTKQNLVK---ANPLKDYVAAISIGKVRNEIVLDLNY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT G VE+ + E TFSQ+ F ML K I LIK+QK+ I Sbjct: 178 AEDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFI 236 >gi|206900914|ref|YP_002251052.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12] gi|226736903|sp|B5YEU4|RNPH_DICT6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|206740017|gb|ACI19075.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12] Length = 240 Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R +R + +TR+ KY GS L++ G+T ++ T ++EEKVP +++ T GW+T Sbjct: 2 IRIDKRSNVDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R R+ V G GRSQEIQR+IGR+LR+V+D S LG R I ID DVIQ Sbjct: 62 AEYGMLPGSTPERKVRDVVKGVINGRSQEIQRLIGRSLRAVIDFSKLGERTIWIDTDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL+D L+ ++ ++ +K VAA+S G++ G ++DL Sbjct: 122 ADGGTRTAAITGAFVALYDALEKLKRDGVIKEIP--IKEFVAAVSVGIVDGEILLDLSAN 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED +VD N VMT+SG VE+QG+AE+ F+ + MLNLAK I LI++QK + Sbjct: 180 EDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTYEQLQQMLNLAKQGIMKLIEIQKKAL 237 >gi|297559365|ref|YP_003678339.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843813|gb|ADH65833.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 239 Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR Q+R +++TR ++AEGS LV+FGDT +L A++E+ VP W R T GW+TA Sbjct: 3 RPDGRVPTQLRPVTITRNWLRHAEGSVLVEFGDTRVLCAASVEDGVPRWRRGTGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R++GR+LR+VVD A+G I +DCDV+QA Sbjct: 63 EYAMLPRSTDTRGSRESVRGKIGGRTHEISRLVGRSLRAVVDFKAMGEHTITLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + K + + L G +AA+S G++ G P +DL+Y E Sbjct: 123 DGGTRTAAITGAYVALADAMKWLRK-RRKLK-NNPLTGSLAAVSVGVVQGQPRLDLNYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N V+T G +EVQG+AE A F +D +L+LA +L +QK +S Sbjct: 181 DSVADTDMNVVITGDGKFIEVQGTAEGAPFDRDLLNQLLDLAVSGCGELTAIQKKALS 238 >gi|302865661|ref|YP_003834298.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029] gi|315502225|ref|YP_004081112.1| ribonuclease ph [Micromonospora sp. L5] gi|302568520|gb|ADL44722.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029] gi|315408844|gb|ADU06961.1| ribonuclease PH [Micromonospora sp. L5] Length = 242 Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 117/240 (48%), Positives = 163/240 (67%), Gaps = 1/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R ++LTR S + EGS LV+FG T +L TA++ E VP W + + GW+TA Sbjct: 3 RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+ VDL ALG I++DCDV+QA Sbjct: 63 EYAMLPRATNTRSDRESVRGKVGGRTHEISRLIGRSLRACVDLKALGENSIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHM-EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VALHD + + E + ++ +V+ VAA+S G++ G P++DL Y Sbjct: 123 DGGTRTAAITGAYVALHDAVTWLAERKALAGKVEKVMHRSVAAVSVGVIGGEPMLDLCYA 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED T +VD N V T +G VEVQG+ E F++D A+L+L +L Q+ +S+ Sbjct: 183 EDVTAEVDMNVVCTGTGDFVEVQGTGEAGVFARDQLDALLDLGVAGCLELADAQRKALSS 242 >gi|332686498|ref|YP_004456272.1| ribonuclease PH [Melissococcus plutonius ATCC 35311] gi|332370507|dbj|BAK21463.1| ribonuclease PH [Melissococcus plutonius ATCC 35311] Length = 453 Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 161/239 (67%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR E Q+R I++ V KY EGS ++ FGDT ++ +AT+EEKVP ++++++ GW+T Sbjct: 2 IRNDGRGEQQLRSITIETNVFKYPEGSVVISFGDTKVICSATIEEKVPFFLKDSEKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +R++ G+ GR+ EIQR+I R+LR+VVDL L + IIIDCDVIQ Sbjct: 62 AEYSMLPRATQRRNRRDSNKGKLNGRATEIQRLISRSLRAVVDLEKLTGKSIIIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179 ADGGTRTA+ITGA+VAL ++ + +K ++AA+S GML I DL+Y Sbjct: 122 ADGGTRTASITGAFVALKLAVEKL--LQQGLLTENPIKEYLAAVSVGMLSNDNCITDLNY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ VD N VMT++G+ VE+QG+ E ATFS + ML K I +LI +QK I Sbjct: 180 EEDTAAKVDMNLVMTETGNFVEIQGTGEEATFSGEELNTMLFYGKQAIEELISIQKQAI 238 >gi|184200648|ref|YP_001854855.1| ribonuclease PH [Kocuria rhizophila DC2201] gi|183580878|dbj|BAG29349.1| ribonuclease PH [Kocuria rhizophila DC2201] Length = 244 Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 161/240 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R I++TR S+ AEGS L++FG T +L TA+L E VP W++ GW+T Sbjct: 1 MRADGRSVAELRPITITRGWSEQAEGSALIEFGGTRVLCTASLTEGVPRWLKGEGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++DL ALG +++DCDV+Q Sbjct: 61 AEYAMLPRATSTRSARESVKGKIGGRTHEISRLIGRSLRSIIDLEALGENTVVLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL + + D + L VAA+S G++ G P++DL Y Sbjct: 121 ADGGTRTASITGAYVALAEAINWAHDNGVLKRRVNPLTDSVAAVSVGIIDGVPMLDLPYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N V+T SG VEVQG+AE A F +D A+L+LA + L ++Q++ + + Sbjct: 181 EDVRAETDMNVVVTGSGDFVEVQGTAEGAPFRRDELDALLDLAVAGCSQLAQIQRETLES 240 >gi|310826563|ref|YP_003958920.1| ribonuclease PH [Eubacterium limosum KIST612] gi|308738297|gb|ADO35957.1| ribonuclease PH [Eubacterium limosum KIST612] Length = 240 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 167/239 (69%), Gaps = 6/239 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R +S+TR ++ A+G+ L++ G+T ++ TA +E+KVP ++R K GW+TA Sbjct: 3 RIDGRSNECLRPVSITRHFTRNAQGAVLIEVGNTKVICTAMVEDKVPPFLRGEKKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP STG+R R+ G+ GR+ EIQR+IGR+LRSV+D+ LG R I IDCDVIQA Sbjct: 63 EYEMLPSSTGSRKGRDRSRGKIDGRTVEIQRLIGRSLRSVIDMEKLGERTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTA+ITGA+VAL+D + + E+ +++ ++ G+VAA S G+ PI+DL Y Sbjct: 123 DGGTRTASITGAFVALYDAVTWLMEEEIIDEWPIN----GYVAATSVGINQNEPIMDLCY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST +VD N VMTD G IVE+QG+ E F++D F +L L +D + LI +QK+ + Sbjct: 179 EEDSTAEVDMNIVMTDEGEIVEIQGTGEERPFTRDEFQKLLALGEDGVYQLINIQKEAL 237 >gi|328955985|ref|YP_004373318.1| RNAse PH [Coriobacterium glomerans PW2] gi|328456309|gb|AEB07503.1| RNAse PH [Coriobacterium glomerans PW2] Length = 246 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 159/238 (66%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +R + L R V K A GSC+V+FGDT +L AT+E+ +P W R ++ GW+TA Sbjct: 8 RADGRGAGDLRRVRLERDVMKNALGSCMVEFGDTRVLCAATIEDGLPGWRRASRSGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP STG R +RE G++ GRSQEI+R+IGR+LR+ +L ALG + IDCDVIQA Sbjct: 68 EYAMLPASTGRRTRRE--FGQRRGRSQEIERLIGRSLRTATNLRALGEHTVTIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TGAWVALHD L + + ++ L VAA+S G++ G ++DLDY E Sbjct: 126 DGGTRTAALTGAWVALHDALAAWVEAARIPRIP--LVSQVAAVSMGLVDGNVLLDLDYAE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V T S IVE+QG+ ER F + H A+L+L + I LI LQ +V + Sbjct: 184 DSRAEVDMNLVCTQSREIVEIQGTGERTPFDRAHLDALLDLGFEGIERLIALQNEVTA 241 >gi|257468117|ref|ZP_05632213.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185] gi|317062402|ref|ZP_07926887.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185] gi|313688078|gb|EFS24913.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185] Length = 254 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ + +REI +T+ + YAEGS L++FG+T ++ TA++ EKVP ++R GW+T Sbjct: 17 LREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASVSEKVPPFMRGQGKGWLT 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+TG R +RE+ G+ GR+ EIQR+IGRALR+ VDL LG R I IDCDVIQ Sbjct: 77 AEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQ 136 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +I+G ++AL ++ + ++ + +VAAIS G++ G P++DL Y Sbjct: 137 ADGGTRTTSISGGFIALALAVKKL--MKDRVLNVNPIVSNVAAISVGIVRGTPMLDLMYT 194 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N VM G VEVQG+ E AT+++ +++LA+ I ++I+LQ +VI Sbjct: 195 EDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNELIDLAEVGIKEIIRLQNEVI 252 >gi|238755573|ref|ZP_04616910.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473] gi|238706173|gb|EEP98553.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473] Length = 238 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 122/238 (51%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPAGRALEQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + +N S +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKL--VANGKLKSNPMKGLVAAVSVGIVKGKAMCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + Q+ V+ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIESIFQAQRAVL 236 >gi|224585533|ref|YP_002639332.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470061|gb|ACN47891.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 228 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 120/230 (52%), Positives = 157/230 (68%), Gaps = 2/230 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWITAEYGMLPR+T Sbjct: 1 MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDV+QADGGTRTA+I Sbjct: 61 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQADGGTRTASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TGA VAL D L + +N + +KG VAA+S G++ G I DL+Y EDS + D N Sbjct: 121 TGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 179 VVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 228 >gi|294629581|ref|ZP_06708141.1| ribonuclease PH [Streptomyces sp. e14] gi|292832914|gb|EFF91263.1| ribonuclease PH [Streptomyces sp. e14] Length = 241 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 116/234 (49%), Positives = 155/234 (66%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAFVALADAVAWAQGKKLIKTGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D D D N V T G VEVQG+AE F++D A+L+LA DL +Q+ Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCTDLAAIQR 236 >gi|283458297|ref|YP_003362916.1| RNase PH [Rothia mucilaginosa DY-18] gi|283134331|dbj|BAI65096.1| RNase PH [Rothia mucilaginosa DY-18] Length = 243 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 111/239 (46%), Positives = 164/239 (68%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE++ GR GGR+ EI R+IGR+LR+V+++ LG I++DCDV+QA Sbjct: 65 EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ + L V+AIS G++ G P++DL Y E Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V+T SG VEVQG+AE A F +D ++L+LA + A+L ++Q++ +++ Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNSLLDLALEGTAELAQIQREALAH 243 >gi|217967720|ref|YP_002353226.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724] gi|226736904|sp|B8E0G7|RNPH_DICTD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|217336819|gb|ACK42612.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724] Length = 240 Score = 231 bits (590), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R +R + +TR+ KY GS L++ G+T ++ T ++EEKVP +++ T GW+T Sbjct: 2 VRIDKRSNTDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R R+ V G GRSQEIQR+IGR+LR+VVD S LG R I ID DVIQ Sbjct: 62 AEYGMLPGSTPERKVRDVVKGAINGRSQEIQRLIGRSLRAVVDFSKLGERTIWIDADVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL+D L+ ++ ++ ++ VAA+S G++ G ++DL Sbjct: 122 ADGGTRTAAITGAFVALYDALEKLKREGIIKEIP--IREFVAAVSVGIVDGEILLDLSAN 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED +VD N VMT+SG VE+QG+AE+ F+ + MLNLAK I LI++QK + Sbjct: 180 EDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTHEQLQHMLNLAKQGIMRLIEIQKKTL 237 >gi|332669877|ref|YP_004452885.1| ribonuclease PH [Cellulomonas fimi ATCC 484] gi|332338915|gb|AEE45498.1| ribonuclease PH [Cellulomonas fimi ATCC 484] Length = 262 Score = 231 bits (589), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 119/235 (50%), Positives = 161/235 (68%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R ++LTRR EGS LV+FG T +L A+L E VP W + + GW+T Sbjct: 8 LRADGRRPDELRPVTLTRRFLDAGEGSVLVEFGGTKVLCVASLTEGVPRWRKGSGEGWVT 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+QEI R+IGR+LR+VVD+SALG I++DCDV+Q Sbjct: 68 AEYAMLPRATSTRSDRESVKGRVGGRTQEISRLIGRSLRAVVDVSALGENTIVLDCDVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + QVL+ VAA+S G++ G P++DL Y Sbjct: 128 ADGGTRTAAITGAYVALADAVAWAQQRRLVPAGRQVLRDSVAAVSVGIVDGVPVLDLPYV 187 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED + D N V+T SG VEVQG+AE A F + ++L+LA A+L +LQ+ Sbjct: 188 EDVRAETDMNVVVTGSGTFVEVQGTAEHAPFDRRELDSLLDLALAGTAELTRLQR 242 >gi|239917361|ref|YP_002956919.1| RNAse PH [Micrococcus luteus NCTC 2665] gi|281414156|ref|ZP_06245898.1| RNAse PH [Micrococcus luteus NCTC 2665] gi|239838568|gb|ACS30365.1| RNAse PH [Micrococcus luteus NCTC 2665] Length = 254 Score = 231 bits (589), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 113/238 (47%), Positives = 162/238 (68%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA Sbjct: 10 RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+V GR GGR+ EI R+IGR+LR+V+DLSALG I++DCDV+ A Sbjct: 70 EYAMLPRATNERSQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL + + + + VLK VAA+S G++ G P++DL Y E Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V+T +G VEVQG+AE A F++ +L+LA +L ++Q + ++ Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLA 247 >gi|270265234|ref|ZP_06193496.1| ribonuclease PH [Serratia odorifera 4Rx13] gi|270040868|gb|EFA13970.1| ribonuclease PH [Serratia odorifera 4Rx13] Length = 238 Score = 231 bits (589), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNALV-AAGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS D A+L LA+ I + + QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIETIFQAQKAALAE 238 >gi|253690467|ref|YP_003019657.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494124|sp|C6DIC7|RNPH_PECCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|251757045|gb|ACT15121.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 238 Score = 231 bits (589), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 119/235 (50%), Positives = 161/235 (68%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R + LTR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPTGRSAQQVRPLKLTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M +N +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNQM--VANGKLKKNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D N VMT+ G ++EVQG+AE FS + ++L LA+ I +++ QK Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLSLLALARGGIETIVQAQK 233 >gi|167628594|ref|YP_001679093.1| ribonuclease ph [Heliobacterium modesticaldum Ice1] gi|167591334|gb|ABZ83082.1| ribonuclease ph [Heliobacterium modesticaldum Ice1] Length = 243 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GRQ +Q+R + + R+ + EGS L+ G+T ++ TAT+EEKVP + + + GW+TA Sbjct: 3 RVDGRQADQLRPVQIQRQYLIHPEGSVLITVGNTKVICTATVEEKVPPFQKGSGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +RE G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQA Sbjct: 63 EYGMLPRATGTRTQREVTRGKATGRTMEIQRLIGRALRSVVDLQRLGERTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + NK + +AA+S G + G ++DL Y E Sbjct: 123 DGGTRTASITGAFVALKDACRRL--LKNKQIQKDPIIEALAAVSVGKVAGELLLDLAYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ +VD N VMT G VE+QG+AE F +D AML LA+ I +LI+ Q ++ Sbjct: 181 DAKAEVDMNVVMTAGGRFVELQGTAEGTPFGRDELDAMLRLAEKGICELIEAQNQALAE 239 >gi|78223083|ref|YP_384830.1| ribonuclease PH [Geobacter metallireducens GS-15] gi|123571779|sp|Q39UG9|RNPH_GEOMG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|78194338|gb|ABB32105.1| RNAse PH [Geobacter metallireducens GS-15] Length = 238 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +R I++TR K+AEG+ LV+FGDT ++ TA++EE VP ++R GW+T Sbjct: 1 MRSDGREAGSLRGINITRHYIKHAEGAVLVEFGDTKVICTASVEESVPPFLRGKGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R REA G+ GGR+ EIQR+IGR+LR+V DL+ LG R ++IDCDVIQ Sbjct: 61 AEYSMLPRSTHTRSSREAARGKIGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D L + + L +K VAA+S G++ G ++DL+Y Sbjct: 121 ADGGTRTASITGAYVALVDALHLLVERGVLPLLP--IKEAVAAVSVGIVDGNILLDLNYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD NFVMT S VEVQG+AE F+ + M A + I L +Q + +S Sbjct: 179 EDSAAEVDMNFVMTSSDRFVEVQGTAESEPFTVEQMDGMRVAAVEGIRKLFSIQNEALS 237 >gi|170728887|ref|YP_001762913.1| ribonuclease PH [Shewanella woodyi ATCC 51908] gi|226736940|sp|B1KL12|RNPH_SHEWM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|169814234|gb|ACA88818.1| ribonuclease PH [Shewanella woodyi ATCC 51908] Length = 237 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q R +++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPNDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKNNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++E+QG+AE FS + ++L LAK I +++ +QK +S Sbjct: 179 EDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDVQKAALS 237 >gi|269137419|ref|YP_003294119.1| RNase PH [Edwardsiella tarda EIB202] gi|267983079|gb|ACY82908.1| RNase PH [Edwardsiella tarda EIB202] gi|304557493|gb|ADM40157.1| Ribonuclease PH [Edwardsiella tarda FL6-60] Length = 238 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR Q+R + LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T Sbjct: 1 MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + K + S LKG VAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALGALV-AAGKLKESP-LKGMVAAVSVGIVADEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+D I +I+ QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQKTALEQ 238 >gi|50119101|ref|YP_048268.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043] gi|61215912|sp|Q6DAW2|RNPH_ERWCT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|49609627|emb|CAG73060.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043] Length = 238 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 119/240 (49%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M +N +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNQM--VANGKLKKNPMKGMVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G +VEVQG+AE FS + +L LA+ I +++ QK +++ Sbjct: 179 EDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAALAD 238 >gi|251773010|gb|EES53566.1| ribonuclease PH [Leptospirillum ferrodiazotrophum] Length = 238 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +Q+R +S+ ++YAEGS L++ G TH+L T +LEEKVP ++++ GW+T Sbjct: 1 MRSDGRTSDQLRTLSIDPSPNRYAEGSALIRMGFTHVLATVSLEEKVPPFLKDQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSVV+ +G R IDCDVIQ Sbjct: 61 AEYGMLPRSTHERSPREAARGKQSGRTQEIQRLIGRSLRSVVNFEKMGVRTATIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+I GA+VAL +++ L ++AA+S G++ G P +DL Y Sbjct: 121 ADGGTRCASIGGAFVALALAFSNLKKVG--VIAESPLVDYLAAVSVGIVDGEPCLDLCYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD N VMT G +VEVQG+AE +FS+ +L+LA I++++ LQK ++ Sbjct: 179 EDSAADVDMNVVMTGKGELVEVQGTAEHRSFSRKEMDRLLDLAWKGISEIVDLQKRLV 236 >gi|251798434|ref|YP_003013165.1| ribonuclease PH [Paenibacillus sp. JDR-2] gi|247546060|gb|ACT03079.1| ribonuclease PH [Paenibacillus sp. JDR-2] Length = 245 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 165/239 (69%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ NQ+R +++T V+KYAEGS L++ G+T ++ TA++EE+VP +++ GWIT Sbjct: 1 MRTDGRQPNQLRPVTITTGVNKYAEGSVLIEVGETKVICTASVEERVPPFMKGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+ G+ GR+ EIQR+IGRALRS+VDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATHSRNHRESAKGKLSGRTMEIQRLIGRALRSIVDLQALGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRT +ITGA+VAL CL + S Q + + +A++S G++ ++DL+Y Sbjct: 121 ADGGTRTTSITGAFVAL--CL-AVNKLSKTTQFPKYPITAFLASVSVGVIQERELLDLNY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT G VE+QG+ E + FS++ +L LA+ I +LI+ Q++ + Sbjct: 178 DEDSKAKVDMNVVMTGEGKFVELQGTGEDSPFSREELNKLLELAEGGIEELIEKQREAL 236 >gi|260893784|ref|YP_003239881.1| ribonuclease PH [Ammonifex degensii KC4] gi|260865925|gb|ACX53031.1| ribonuclease PH [Ammonifex degensii KC4] Length = 258 Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL GR ++R + + SKYAEGSCL++ GDT +L TA++++KVP +++ T GW+T Sbjct: 1 MRLDGRGTGELRPVKIIPGYSKYAEGSCLIEMGDTRVLCTASIDDKVPSFLKGTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R RE GR GR+ EIQR+IGR+LR+ VDL ALG R II+DCDV+Q Sbjct: 61 AEYGMLPRATESRNLREVTKGRPSGRTLEIQRLIGRSLRAAVDLEALGERTIIVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VAL L + + L +K VAA+S G + ++DL + Sbjct: 121 ADGGTRTAAITGGFVALVYALDWLRNEGAIESLP--VKDLVAAVSVGKVKDAYLLDLTFA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N VMT G +VEVQG+AE F+++ ML+LA ++ LI Q++ + Sbjct: 179 EDSMAEVDLNVVMTGKGELVEVQGTAEGKPFTREELNLMLDLAAQGVSVLIAKQREAL 236 >gi|289706339|ref|ZP_06502697.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58] gi|289556834|gb|EFD50167.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58] Length = 254 Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 113/238 (47%), Positives = 162/238 (68%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA Sbjct: 10 RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+V GR GGR+ EI R+IGR+LR+V+DLSALG I++DCDV+ A Sbjct: 70 EYAMLPRATNERNQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL + + + + VLK VAA+S G++ G P++DL Y E Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V+T +G VEVQG+AE A F++ +L+LA +L ++Q + ++ Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLA 247 >gi|126172622|ref|YP_001048771.1| ribonuclease PH [Shewanella baltica OS155] gi|152998920|ref|YP_001364601.1| ribonuclease PH [Shewanella baltica OS185] gi|160873506|ref|YP_001552822.1| ribonuclease PH [Shewanella baltica OS195] gi|217971601|ref|YP_002356352.1| ribonuclease PH [Shewanella baltica OS223] gi|304411675|ref|ZP_07393287.1| ribonuclease PH [Shewanella baltica OS183] gi|307306273|ref|ZP_07586018.1| ribonuclease PH [Shewanella baltica BA175] gi|166228316|sp|A3CZI9|RNPH_SHEB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228317|sp|A6WI99|RNPH_SHEB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043774|sp|A9KXZ7|RNPH_SHEB9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808600|sp|B8E4I8|RNPH_SHEB2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|125995827|gb|ABN59902.1| RNAse PH [Shewanella baltica OS155] gi|151363538|gb|ABS06538.1| ribonuclease PH [Shewanella baltica OS185] gi|160859028|gb|ABX47562.1| ribonuclease PH [Shewanella baltica OS195] gi|217496736|gb|ACK44929.1| ribonuclease PH [Shewanella baltica OS223] gi|304349863|gb|EFM14269.1| ribonuclease PH [Shewanella baltica OS183] gi|306911146|gb|EFN41573.1| ribonuclease PH [Shewanella baltica BA175] gi|315265735|gb|ADT92588.1| ribonuclease PH [Shewanella baltica OS678] Length = 237 Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + +L LAK+ I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLALAKNSIREIVDVQKAALN 237 >gi|255066782|ref|ZP_05318637.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256] gi|255048857|gb|EET44321.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256] Length = 241 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 117/237 (49%), Positives = 169/237 (71%), Gaps = 2/237 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R GW+TAEY Sbjct: 7 TSRAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR++VD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAIVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALQIAVNKL--LSDDLISENPIREAVAAVSAGVVNGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D N VMT SG I+E+QG+AE A FS D F ++ LA+ IA+L Q+ +S+ Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLDEFGKLIALAQKGIAELTAHQQAALSS 241 >gi|330466053|ref|YP_004403796.1| ribonuclease PH [Verrucosispora maris AB-18-032] gi|328809024|gb|AEB43196.1| ribonuclease PH [Verrucosispora maris AB-18-032] Length = 243 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 119/243 (48%), Positives = 162/243 (66%), Gaps = 7/243 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R ++LTR S + EGS LV+FG T +L TA++ E VP W R + GW+TA Sbjct: 3 RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRRGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I++DCDV+QA Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAAIDLKALGENSIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS----QVLKGHVAAISCGMLCGYPIVDL 177 DGGTRTAAITGA+VALHD + + + + L+ +V+ VAAIS G++ G P +DL Sbjct: 123 DGGTRTAAITGAYVALHDAVSWL---AARKALTGTPEKVMHRSVAAISVGVVAGEPRLDL 179 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y ED +VD N V T +G VEVQG+ E F++D A+L+LA DL + Q+ Sbjct: 180 CYDEDVAAEVDMNVVCTGAGDFVEVQGTGEAGVFARDQLDALLDLATVGCLDLAEAQRKA 239 Query: 238 ISN 240 + + Sbjct: 240 LGS 242 >gi|260494952|ref|ZP_05815081.1| ribonuclease PH [Fusobacterium sp. 3_1_33] gi|260197395|gb|EEW94913.1| ribonuclease PH [Fusobacterium sp. 3_1_33] Length = 434 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N +M G +EVQG+ E +TF++ +L+LA++ I LIKLQ ++I+ Sbjct: 180 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|261405343|ref|YP_003241584.1| ribonuclease PH [Paenibacillus sp. Y412MC10] gi|261281806|gb|ACX63777.1| ribonuclease PH [Paenibacillus sp. Y412MC10] Length = 252 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 115/238 (48%), Positives = 167/238 (70%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR+ +++R ++L+ V+KYAEGS ++ GDT +L TAT++EKVP +++ GW+T Sbjct: 1 MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA+VAL + + + +K + + ++A+IS G+ G ++DL+Y Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAE-QHKLAVFPITD-YLASISVGIAGGQALLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT SG VEVQG+ E + FS++ +L L + I +LI+ Q++ + Sbjct: 179 EDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEAL 236 >gi|282865124|ref|ZP_06274177.1| ribonuclease PH [Streptomyces sp. ACTE] gi|282560047|gb|EFB65596.1| ribonuclease PH [Streptomyces sp. ACTE] Length = 245 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 115/238 (48%), Positives = 157/238 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKHGRKPLTGTVAAVSVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V T G VEVQG+AE A F + A+L+LA DL KLQ++ ++ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAAPFDRSELDALLDLATAGCVDLAKLQQEALA 240 >gi|298369114|ref|ZP_06980432.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str. F0314] gi|298283117|gb|EFI24604.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str. F0314] Length = 246 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 117/235 (49%), Positives = 171/235 (72%), Gaps = 2/235 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 +GR + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEY Sbjct: 7 TGRAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASVDENVPPFLRGKEQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTATRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL ++ + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALQIAVEKL--LSDGLIGENPIREAVAAVSAGVVGGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N VMT SG I+E+QG+AE A FS D ++ LA+ IA+L++ Q++ + Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELVRHQQNAL 239 >gi|317494714|ref|ZP_07953126.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917316|gb|EFV38663.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA] Length = 238 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR Q+R + LTR +K+AEGS LV+FG+T +L AT+EE VP +++ GW+T Sbjct: 1 MRPEGRTAEQIRPLKLTRHYTKHAEGSVLVEFGETKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNALV-AAGKLK-ANPMKGMVAAVSVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I +I+ QK + N Sbjct: 179 EDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLQLLALARGGIDKIIQAQKAALEN 238 >gi|329925260|ref|ZP_08280203.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5] gi|328940093|gb|EGG36426.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5] Length = 252 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 115/238 (48%), Positives = 167/238 (70%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR+ +++R ++L+ V+KYAEGS ++ GDT +L TAT++EKVP +++ GW+T Sbjct: 1 MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA+VAL + + + +K + + ++A+IS G+ G ++DL+Y Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAE-QHKLAVFPITD-YLASISVGIAGGQALLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT SG VEVQG+ E + FS++ +L L + I +LI+ Q++ + Sbjct: 179 EDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEAL 236 >gi|309378698|emb|CBX22648.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 242 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 116/236 (49%), Positives = 170/236 (72%), Gaps = 2/236 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R+I +T R + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEY Sbjct: 7 TSRAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VALH + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALHIAVGKL--VSDGILTENPIREAVAAVSAGVVGGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S Sbjct: 185 GCDSDVNIVMTTSGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240 >gi|294812846|ref|ZP_06771489.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064] gi|326441376|ref|ZP_08216110.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064] gi|294325445|gb|EFG07088.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064] Length = 248 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/241 (48%), Positives = 154/241 (63%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+T Sbjct: 5 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG I++DCDV+QA Sbjct: 65 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L VAA+S G++ G P++DL Y E Sbjct: 125 DGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D D N V T G VEVQG+AE F + A+L+LA ADL LQ D ++ Sbjct: 185 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAALQNDALART 244 Query: 242 V 242 V Sbjct: 245 V 245 >gi|326779081|ref|ZP_08238346.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1] gi|326659414|gb|EGE44260.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1] Length = 245 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 155/239 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R REAV G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L VAAIS G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V T G VEVQG+AE A F + A+L+LA DL LQ+D ++ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAALQRDALAT 241 >gi|257463721|ref|ZP_05628110.1| ribonuclease PH [Fusobacterium sp. D12] gi|317061266|ref|ZP_07925751.1| ribonuclease PH [Fusobacterium sp. D12] gi|313686942|gb|EFS23777.1| ribonuclease PH [Fusobacterium sp. D12] Length = 249 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/237 (47%), Positives = 163/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR+ENQ+REI +TR + +AEGS L++ G+T ++ TA++ EKVP +++NT GW+TA Sbjct: 3 RLDGRRENQLREIKITRDFNMHAEGSVLIESGNTKVICTASVSEKVPSFLKNTGKGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+TG R +REA G+ GR+ EIQR+IGRALRS VDL LG R I +DCDVIQA Sbjct: 63 EYCMIPRATGERTQREAAKGKLSGRTMEIQRLIGRALRSSVDLEKLGERTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG+++A+ + + + + VAA+S G ++DL+Y E Sbjct: 123 DGGTRTASITGSFIAMAIAVAKL--LKEEILTESPVLSRVAAVSVGKHENSILLDLNYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS+ +VD N + D G +EVQG+ E ATF + A+L++A+ I L++ QK+V+ Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQKEVL 237 >gi|160872895|ref|ZP_02063027.1| ribonuclease PH [Rickettsiella grylli] gi|159121694|gb|EDP47032.1| ribonuclease PH [Rickettsiella grylli] Length = 237 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 121/238 (50%), Positives = 158/238 (66%), Gaps = 4/238 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R I+L R + YAEGS V FG T +L TA++ VP +++ + HGWIT Sbjct: 1 MRASQRALDELRAITLIRSYTNYAEGSVWVAFGQTKVLCTASIIPGVPKFLKGSNHGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GRS EIQR+IGR LR VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRSDREASRGKQTGRSLEIQRLIGRVLRMSVDLKQLGENTIFLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L M+ K+ L VAA+S G+ G ++DLDY Sbjct: 121 ADGGTRTAAITGASVALKDALATMKG-EMKYNPWCFL---VAAVSVGIYKGQALLDLDYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS ++D N +MT+ G ++E+Q +AE+A FS+ +LNLA+ I +K QK+V+ Sbjct: 177 EDSHAEMDMNVIMTEQGKLLEIQATAEKAAFSKQQLNQLLNLAETGIKQCVKKQKEVL 234 >gi|254389819|ref|ZP_05005043.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064] gi|197703530|gb|EDY49342.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064] Length = 246 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/241 (48%), Positives = 154/241 (63%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+T Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L VAA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D D N V T G VEVQG+AE F + A+L+LA ADL LQ D ++ Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAALQNDALART 242 Query: 242 V 242 V Sbjct: 243 V 243 >gi|255326296|ref|ZP_05367382.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296] gi|255296750|gb|EET76081.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296] Length = 243 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 110/239 (46%), Positives = 163/239 (68%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE++ GR GGR+ EI R+IGR+LR+V+++ LG I++DCDV+QA Sbjct: 65 EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ + L V+AIS G++ G P++DL Y E Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V+T SG VEVQG+AE F +D ++L+LA + A+L ++Q++ +++ Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGVPFDRDELNSLLDLALEGTAELAQIQREALAH 243 >gi|296268927|ref|YP_003651559.1| ribonuclease PH [Thermobispora bispora DSM 43833] gi|296091714|gb|ADG87666.1| ribonuclease PH [Thermobispora bispora DSM 43833] Length = 247 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/242 (48%), Positives = 162/242 (66%), Gaps = 3/242 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-KVPMWIRNTKHGWIT 60 R GR+ +Q+R +++TR +AEGS LV+FG T +L AT+E VP W + + GW+T Sbjct: 3 RSDGRRPDQLRPVTITRNWLAHAEGSVLVEFGATKVLCAATVEAGNVPRWRKGSGLGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+TG R +RE+V G+ GGR+ EI R+IGRALR+ VD +G IIIDCDV+Q Sbjct: 63 AEYAMLPRATGTRSERESVKGKIGGRTHEISRLIGRALRACVDFKVMGENSIIIDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + M +N+ L L V+A+S G++ P++DL Y Sbjct: 123 ADGGTRTAAITGAFVALADAVAWMR--ANEVCLGDPLVNSVSAVSVGIVGSEPLLDLCYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N VMT +G VEVQG+AE A F +D A+L+LA A+L ++Q + + Sbjct: 181 EDVVAETDMNVVMTGAGAFVEVQGTAEGAPFGRDQLNALLDLATAGCAELARIQAEALGR 240 Query: 241 EV 242 ++ Sbjct: 241 DL 242 >gi|294783495|ref|ZP_06748819.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA] gi|294480373|gb|EFG28150.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA] Length = 435 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T GW+T Sbjct: 2 LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA G+ GR+ EIQR+IGRALRS +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG +VAL ++ + ++ L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYVALALAIKKL--LKDEILEENPLIANVAAISVGKIDSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N +M G +EVQG+ E +TF++ +L+LA+ I +I LQ VI Sbjct: 180 EDSVAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|188996466|ref|YP_001930717.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1] gi|226736945|sp|B2V890|RNPH_SULSY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|188931533|gb|ACD66163.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1] Length = 257 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 158/239 (66%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ Q+R I + R + YAEGS L++FG+T ++ TA++E+KVP +++ T GWIT Sbjct: 1 MRPDGRKPAQLRPIKIIRDFNIYAEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR++ R RE V G GR+ EIQR+IGR+LR+ VDL LG + I IDCDVIQ Sbjct: 61 AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHD-CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTR A+ITGA++A+ D C++ + K + LK +VAAIS G + ++DL+Y Sbjct: 121 ADGGTRVASITGAFIAVADACIKLTKQNLVK---ANPLKDYVAAISVGKVRNEIVLDLNY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT G VE+ + E TFSQ+ F ML K I LIK+QK+ I Sbjct: 178 TEDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFI 236 >gi|164686704|ref|ZP_02210732.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM 16795] gi|164604094|gb|EDQ97559.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM 16795] Length = 449 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/237 (49%), Positives = 159/237 (67%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ +TR +KYAEGS ++ GDT +L A++E+KVP ++RNT GWI A Sbjct: 3 RIDGREFDQIRDLKITRNYTKYAEGSVFIEMGDTKVLCNASIEDKVPPFLRNTGTGWINA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R R+A G+ GRSQEIQR+IGRA+RSVVDL LG R I IDCDVIQA Sbjct: 63 EYSMLPRSTQQRKIRDASRGKIDGRSQEIQRLIGRAIRSVVDLDKLGERTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ D + + K ++ V+AIS G++ G ++DL Y E Sbjct: 123 DGGTRTASITGAFVAVLDAINKLH--KEKAIKHMPVRNFVSAISVGIVNGEYLLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS VD N +MTD G VE+QG+ E FS+ +L L + L+K Q++ + Sbjct: 181 DSNAQVDMNIIMTDKGEFVELQGTGEECPFSRKDLEKLLELGEKGNKMLLKAQREAL 237 >gi|253583583|ref|ZP_04860781.1| ribonuclease PH [Fusobacterium varium ATCC 27725] gi|251834155|gb|EES62718.1| ribonuclease PH [Fusobacterium varium ATCC 27725] Length = 254 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ + +REI +T+ + YAEGS L++FG+T ++ TA++ +KVP ++R GW+T Sbjct: 17 LREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASVSDKVPPFMRGQGKGWLT 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+TG R +RE+ G+ GR+ EIQR+IGRALR+ VDL LG R I IDCDVIQ Sbjct: 77 AEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLDKLGERTITIDCDVIQ 136 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +I+G ++AL ++ + ++ + +VAAIS G++ G P++DL Y Sbjct: 137 ADGGTRTTSISGGFIALALAVKKL--MKDRVLSVNPIVSNVAAISVGIVRGTPMLDLMYT 194 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N VM G VEVQG+ E AT+++ +++LA+ I ++I+LQ ++I Sbjct: 195 EDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNELIDLAEVGIKEIIRLQNEII 252 >gi|74316495|ref|YP_314235.1| RNAse PH [Thiobacillus denitrificans ATCC 25259] gi|74055990|gb|AAZ96430.1| ribonuclease PH [Thiobacillus denitrificans ATCC 25259] Length = 244 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 120/229 (52%), Positives = 154/229 (67%), Gaps = 2/229 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R + TRR +K+AEGS LV GDT +L TA++ +KVP + + GW+TA Sbjct: 7 RPSGRAPDALRALRFTRRFTKHAEGSVLVAMGDTQVLCTASVVDKVPPHKKGSGEGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+VVDL LG R + IDCDV+QA Sbjct: 67 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+I GA+VA+ D + + + L VAA+S G+ G P++DLDY E Sbjct: 127 DGGTRCASICGAYVAVADAVSWL--VREGALVETPLVDSVAAVSVGVYQGQPVLDLDYLE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 DS D D N VMT SG IVEVQG+AE FS+ A+L+LA IA + Sbjct: 185 DSACDTDMNVVMTGSGGIVEVQGTAEGVAFSRTTLEALLDLATAGIAQI 233 >gi|116671127|ref|YP_832060.1| ribonuclease PH [Arthrobacter sp. FB24] gi|116611236|gb|ABK03960.1| RNAse PH [Arthrobacter sp. FB24] Length = 252 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 162/239 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R IS+TR SK AEGS L++FG+T +L TA+L E VP W++ GW+T Sbjct: 11 IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q Sbjct: 71 AEYAMLPRATNTRSARESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL + ++ + + +Q L +AA+S G++ G P++DL Y Sbjct: 131 ADGGTRTAAITGAYVALAEAIRFARENKIISKNAQPLIDTIAAVSVGIIDGVPMLDLPYV 190 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D N V+T SG VEVQG+AE A F +D +L+LA L +Q++ ++ Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNQLLDLALLGTEQLAAIQRETLA 249 >gi|284029809|ref|YP_003379740.1| ribonuclease PH [Kribbella flavida DSM 17836] gi|283809102|gb|ADB30941.1| ribonuclease PH [Kribbella flavida DSM 17836] Length = 238 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 113/238 (47%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R ++LTR+ +AEGS LV+FG T +L A++ E VP W + + GW++A Sbjct: 3 RIDGRTPDQLRPVTLTRKWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVSA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYAMLPRSTNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTILLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + D K + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVSFLRD--RKALKGEPLTGSVSAVSVGIIDGTPMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V+T G +EVQG+AE A F + ++L L +L KLQ++ ++ Sbjct: 181 DVRAETDMNLVLTGDGKFIEVQGTAEGAPFDRAELDSLLELGTAGCVELTKLQREALA 238 >gi|163791539|ref|ZP_02185943.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7] gi|159873175|gb|EDP67275.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7] Length = 432 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 117/240 (48%), Positives = 159/240 (66%), Gaps = 3/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++ R +++ K+ EGS LV FGDT ++ AT+E KVP +++ GW+ Sbjct: 1 MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETKVPRFLKGMGSGWVH 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+I R+LRS +DL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSCIDLEALGERSITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL +Q + D S + LS + K +VAAIS G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFVALKLAIQTLLD-SGELALSPI-KENVAAISVGILEDGQAVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT G VE+QG+ E ATFS + +L K I +LI++Q + + Sbjct: 179 LEDSAANVDMNLVMTSGGQFVEIQGTGEEATFSSEQLAVLLEFGKKGIKELIQVQDNAFN 238 >gi|302551723|ref|ZP_07304065.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736] gi|302469341|gb|EFL32434.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736] Length = 245 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 117/237 (49%), Positives = 155/237 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R I++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPQQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQRKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D D N V T G VEVQG+AE F++D A+L+LA ++L Q+ + Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCSELAAHQRTAL 239 >gi|220913058|ref|YP_002488367.1| ribonuclease PH [Arthrobacter chlorophenolicus A6] gi|219859936|gb|ACL40278.1| ribonuclease PH [Arthrobacter chlorophenolicus A6] Length = 252 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 115/240 (47%), Positives = 161/240 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R IS+TR S AEGS L++FG+T +L TA+L VP W++ GW+T Sbjct: 11 VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q Sbjct: 71 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D ++ D + +Q L +AA+S G++ G P++DL Y Sbjct: 131 ADGGTRTAAITGAYVALADAIRFARDNKLIARNAQPLTDTIAAVSVGIIDGVPMLDLPYV 190 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N V+T SG VEVQG+AE A F +D +L+LA L +Q++ +++ Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNQLLDLALLGTTQLAAIQRETLAD 250 >gi|308234186|ref|ZP_07664923.1| RNAse PH [Atopobium vaginae DSM 15829] gi|328944441|ref|ZP_08241903.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829] gi|327491025|gb|EGF22802.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829] Length = 272 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 121/236 (51%), Positives = 156/236 (66%), Gaps = 4/236 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R +L R+V KYA+GSCL+ GDT +L +AT+E+ +P W + + GW++A Sbjct: 38 RSYGRSAFEARPCTLERQVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHLGWVSA 97 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP S R RE GR+G RS EI+R+IGR+LRSVVD S LG I IDCDV+QA Sbjct: 98 EYAMLPASAKRRTPRE-YKGRKG-RSMEIERLIGRSLRSVVDFSKLGEHTITIDCDVLQA 155 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+I GAWVALHD + M + + L G VAAIS G++ G +VDLDY E Sbjct: 156 DGGTRTASIVGAWVALHDACRKMVEADKIARCP--LTGQVAAISMGIVHGELLVDLDYPE 213 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DS DVD N VM D G +VE+QG+ ERAT S+ A+L+ ++ + L LQK V Sbjct: 214 DSNADVDLNVVMRDDGGLVEIQGTGERATLSRHDLNALLDASEPALTKLFALQKSV 269 >gi|261823588|ref|YP_003261694.1| ribonuclease PH [Pectobacterium wasabiae WPP163] gi|261607601|gb|ACX90087.1| ribonuclease PH [Pectobacterium wasabiae WPP163] Length = 238 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 119/240 (49%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M K + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNQMV-AKGKLK-KNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G +VEVQG+AE FS + +L LA+ I +++ QK +++ Sbjct: 179 EDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAALAD 238 >gi|322835049|ref|YP_004215076.1| ribonuclease PH [Rahnella sp. Y9602] gi|321170250|gb|ADW75949.1| ribonuclease PH [Rahnella sp. Y9602] Length = 238 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPAGRNAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNALV-AAGKLK-ANPMKGMVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I + + QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLGLLALARGGIDTIFQAQKAALAE 238 >gi|15606253|ref|NP_213631.1| RNase PH [Aquifex aeolicus VF5] gi|6094114|sp|O67069|RNPH_AQUAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|37928163|pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Aquifex Aeolicus gi|2983451|gb|AAC07032.1| RNase PH [Aquifex aeolicus VF5] Length = 255 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 160/239 (66%), Gaps = 6/239 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCL--QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTAAITGA+VA+ D + H E + +K VAA+S G++ ++DL+ Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHKEGIIEETP----IKDFVAAVSVGIVNDRILLDLN 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK + Sbjct: 177 FEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235 >gi|225848159|ref|YP_002728322.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1] gi|225644653|gb|ACN99703.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1] Length = 257 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 115/238 (48%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R+ Q+R I +TR + YAEGS L++FG+T ++ TA++E+KVP +++ + GWIT Sbjct: 1 MRPDNRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASIEDKVPPFLKGSGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR++ R RE V G GR+ EIQR+IGR+LR+ VDL LG R I IDCDVIQ Sbjct: 61 AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGA++A+ D L +E N S LK +VAAIS G + ++DL+Y Sbjct: 121 ADGGTRVASITGAFIAVADALIKLE--KNNLVKSNPLKDYVAAISVGKVNNEIVLDLNYQ 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT G VE+ + E TF+ M+ K I LIK+QK+ I Sbjct: 179 EDSKAQVDMNIVMTGKGEFVELGATGEENTFTYQELQKMIEYGKSGIERLIKIQKEFI 236 >gi|82523945|emb|CAI78667.1| ribonuclease PH [uncultured delta proteobacterium] Length = 242 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR+ N++R I++T K GS LV+FG+T ++ ATLE+K +++NT GW+TA Sbjct: 4 RSAGRKYNELRPINITNNFLKTTAGSALVEFGNTKVICAATLEDKSAPFLKNTGRGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+ G+ GGR+ EIQR+IGR+LR+V DL++ G + I +DCDVIQA Sbjct: 64 EYSMLPASTQTRTPRESTRGKVGGRTHEIQRLIGRSLRAVCDLNSFGEKTIYMDCDVIQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG ++AL + L+ M+ ++ + +V+AIS G++ ++DL+Y E Sbjct: 124 DGGTRTASITGGFIALVELLKKMK--ADGIVKEIPVNDYVSAISVGIIENKILLDLEYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS DVD NFVMT SG +EVQG+AE F ++ M LA I +LI LQK ++ N Sbjct: 182 DSKADVDMNFVMTGSGKFIEVQGTAEHVPFDKNQMHEMTTLAGQGIEELIALQKKIVGN 240 >gi|254670670|emb|CBA06757.1| ribonuclease PH [Neisseria meningitidis alpha153] gi|261392252|emb|CAX49772.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria meningitidis 8013] gi|325204479|gb|ADY99932.1| ribonuclease PH [Neisseria meningitidis M01-240355] Length = 242 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 118/239 (49%), Positives = 172/239 (71%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+S R + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R GW+T Sbjct: 5 IRIS-RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240 >gi|313668116|ref|YP_004048400.1| ribonuclease PH [Neisseria lactamica ST-640] gi|313005578|emb|CBN87014.1| ribonuclease PH [Neisseria lactamica 020-06] Length = 242 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 115/236 (48%), Positives = 168/236 (71%), Gaps = 2/236 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R+I +T R + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEY Sbjct: 7 TSRAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREASEGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSAGVVNGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240 >gi|291460911|ref|ZP_06025826.2| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC 33693] gi|291380070|gb|EFE87588.1| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC 33693] Length = 436 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 158/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T GW+T Sbjct: 3 LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA G+ GR+ EIQR+IGRALRS +DL LG R I IDCDVIQ Sbjct: 63 AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 123 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLIANVAAISVGKINSELMVDLKYS 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N +M G +EVQG+ E +TF++ +L+LA+ I +I LQ VI Sbjct: 181 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ 240 Query: 241 E 241 E Sbjct: 241 E 241 >gi|229815851|ref|ZP_04446175.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM 13280] gi|229808546|gb|EEP44324.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM 13280] Length = 244 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR NQMR ++LTR V K+A GSCLV+FGDT +L AT+EE VP W + + GW+TA Sbjct: 8 RANGRAANQMRTVNLTRDVMKHALGSCLVEFGDTKVLCAATIEEGVPGWRKASHQGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R +RE + + GRS EI+R+IGR+LR+VV++ +LG + +DCDVIQA Sbjct: 68 EYAMLPASTNRRTRRETNNRK--GRSMEIERLIGRSLRTVVNMKSLGEHTVTVDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVALHD L + +L L G VAA+S G++ G ++DLDY E Sbjct: 126 DGGTRTASITGAWVALHDALMAWVEAGKIARLP--LTGQVAAVSMGLVDGCELLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G I+E+QG+ E+ F + +L+L + I LI LQ +V + Sbjct: 184 DSHAEVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEVTA 241 >gi|253575653|ref|ZP_04852989.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14] gi|251844991|gb|EES73003.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14] Length = 252 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 117/240 (48%), Positives = 163/240 (67%), Gaps = 6/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GRQ ++ R ++LT V+KYAEGS ++ GDT ++ TAT+EEKVPM+++ GW+T Sbjct: 1 MRSNGRQADERRAMNLTVNVNKYAEGSVYIEVGDTKVMCTATVEEKVPMFMKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+I RALRSVVDL ALG R I IDCDV+Q Sbjct: 61 AEYSMLPRATQTRNQRESARGKLSGRTMEIQRLIARALRSVVDLQALGERSITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRT +ITGA+VAL + + + KF ++ L A++S G++ ++DL+ Sbjct: 121 ADGGTRTTSITGAFVALALAMHKIAQKHALPKFPITDFL----ASVSVGIVGEDTLLDLN 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS VD N VMT +G VEVQG+ E FS+ ML LA+ I ++I+ Q++ + Sbjct: 177 YEEDSKAKVDMNVVMTGNGQFVEVQGTGEENPFSRAELDHMLELAEKGIREMIEQQREAL 236 >gi|182438431|ref|YP_001826150.1| ribonuclease PH [Streptomyces griseus subsp. griseus NBRC 13350] gi|226736942|sp|B1VVV6|RNPH_STRGG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|178466947|dbj|BAG21467.1| putative ribonuclease PH [Streptomyces griseus subsp. griseus NBRC 13350] Length = 245 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 117/237 (49%), Positives = 154/237 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R REAV G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L VAAIS G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V T G VEVQG+AE A F + A+L+LA DL LQ+D + Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAALQRDAL 239 >gi|325266593|ref|ZP_08133270.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394] gi|324982036|gb|EGC17671.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394] Length = 292 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 112/233 (48%), Positives = 162/233 (69%), Gaps = 2/233 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R I++T +A+GS L+ G+T ++ TAT++E +P ++R GW+TAEYGM Sbjct: 58 RATDALRPITITPNFLPHADGSVLMACGNTKVICTATIDENIPPFLRGKGQGWVTAEYGM 117 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VD++ LG RQI+IDCDVIQADGGT Sbjct: 118 LPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRAAVDMTKLGERQILIDCDVIQADGGT 177 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL ++ + ++ L G VAAIS G++ G P++DLDY EDS Sbjct: 178 RTASITGAFVALQIAVRKL--LADGRIAENPLVGSVAAISVGVVGGVPLLDLDYPEDSGC 235 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N VM ++ I+E+QG+AE A F D ++ L + I +L +LQ+ + Sbjct: 236 DSDINLVMLNADKIIEIQGTAEGAAFGMDELQQLVALGQKGIRELSELQRQAV 288 >gi|319778262|ref|YP_004129175.1| Ribonuclease PH [Taylorella equigenitalis MCE9] gi|317108286|gb|ADU91032.1| Ribonuclease PH [Taylorella equigenitalis MCE9] Length = 251 Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 116/234 (49%), Positives = 160/234 (68%), Gaps = 4/234 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R +S+TR + YAEGS L+K G TH+L A++ KVP +++ GW+TA Sbjct: 8 RSDGRSNNQIRNVSITRNYTPYAEGSVLIKVGQTHVLCNASVLPKVPPFLKGQGTGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R+ REA G+Q GR+QEIQR+IGR+LR+ +DL+ALG I IDCDVIQA Sbjct: 68 EYGMLPRATHDRMDREASKGKQTGRTQEIQRLIGRSLRACIDLAALGEISIHIDCDVIQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTR A+ITGAWVAL+D + C + + S + + AIS G++ ++DLDY Sbjct: 128 DGGTRCASITGAWVALYDAINK---CIERGLIQSNPIHQQIVAISVGVVGDGLLLDLDYS 184 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS + D N VMT + VE+QG+AE TFS+D +L+LA+ L+++Q Sbjct: 185 EDSNCESDINVVMTSNKTFVEIQGTAEGETFSRDSLNQLLDLAQFGCDQLLRVQ 238 >gi|239941573|ref|ZP_04693510.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998] gi|239988038|ref|ZP_04708702.1| ribonuclease PH [Streptomyces roseosporus NRRL 11379] gi|291445016|ref|ZP_06584406.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998] gi|291347963|gb|EFE74867.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998] Length = 245 Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 155/239 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R REAV G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L VAAIS G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V T G VEVQG+AE A F + ++L+LA DL LQ+D ++ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGSLLDLATAGCVDLAALQRDALAT 241 >gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258602199|gb|EEW15513.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 256 Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 111/241 (46%), Positives = 161/241 (66%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R + +TR + GS LV+FG+T ++ TA++EE VP + +++ GW+TA Sbjct: 18 RADGRATNELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R+ RE++ G+ GR+QEI R++GRALR+ VDL LG + IDCDV+QA Sbjct: 78 EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L ++ + Q L+ VAA+S G++ G P +DL Y E Sbjct: 138 DGGTRTAAITGAYVALADALAVLQ--ARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEE 195 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N MT G VE+QG+ E A F+++ +L+LA+ + +LI+ Q+ ++ E Sbjct: 196 DSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQE 255 Query: 242 V 242 + Sbjct: 256 L 256 >gi|290960058|ref|YP_003491240.1| ribonuclease [Streptomyces scabiei 87.22] gi|260649584|emb|CBG72699.1| putative ribonuclease [Streptomyces scabiei 87.22] Length = 245 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 114/237 (48%), Positives = 155/237 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D D N V T G VEVQG+AE F+++ ++L+LA +L LQ+ + Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELALLQRKAL 239 >gi|1079663|gb|AAC44429.1| RNase PH [Pseudomonas aeruginosa PAO1] Length = 239 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGML RSTG R +REA G+QGGR+ EIQR+I R+LR+ +DLS LG + IDCDVIQ Sbjct: 63 EYGMLRRSTGERNQREASRGKQGGRTLEIQRLIDRSLRAALDLSKLGENTLYIDCDVIQT 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTA+ITGA V+L D L ++ + L LK VAA+S G+ G P++DLDY Sbjct: 123 DGGTRTASITGATVSLIDALAVLK---KRVALKGNPLKQIVAAVSVGIYQGVPVLDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMTD +EVQG+AE A F AML LA+ + +L++ Q+ ++ Sbjct: 180 EDSAAESDLNVVMTDCRRFIEVQGTAEGAPFRPAELNAMLELAQQGMQELVRTQRAALA 238 >gi|91204195|emb|CAJ71848.1| strongly similar to ribonuclease PH [Candidatus Kuenenia stuttgartiensis] Length = 238 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 113/238 (47%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ +++R +++TR +KY+ GS LV+ G+T ++ TA++EE VP I+NT GWIT Sbjct: 1 MRVDNRKYDELRPVTITRNFTKYSAGSVLVESGNTKVICTASIEEYVPPHIKNTGTGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LP +T +RV RE+ G+ GR+ EIQR+IGR+LR++ DL+ L R I IDCDVIQ Sbjct: 61 AEYSLLPGATPSRVPRESTKGKISGRTHEIQRLIGRSLRAICDLTLLKERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+++AL D +Q + D N + + ++ VAAIS G++ ++DL Y Sbjct: 121 ADGGTRTAAITGSYIALADAVQWLLD-KNVIKENPLINS-VAAISAGIVNNIALLDLCYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED++ VD NFVMT SG +EVQG+ E F +D ML LA I ++ ++QK + Sbjct: 179 EDASAQVDMNFVMTGSGKYIEVQGTGEEYAFDEDQLAKMLTLAHKGICEITEIQKKAL 236 >gi|297160096|gb|ADI09808.1| ribonuclease PH [Streptomyces bingchenggensis BCW-1] Length = 243 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 158/240 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +++ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVTIERAWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADALTWGQGKKLIKAGRQPLTGTVSAVSVGIVGGIPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D + D N V T G VEVQG+AE F+++ +L+LA +L ++Q+ ++ E Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCGELAEIQRAALAGE 242 >gi|257069148|ref|YP_003155403.1| RNAse PH [Brachybacterium faecium DSM 4810] gi|256559966|gb|ACU85813.1| RNAse PH [Brachybacterium faecium DSM 4810] Length = 252 Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 115/240 (47%), Positives = 160/240 (66%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+RE+ +TR +AEGS L++FG T +L A+ VP W + + GW+TA Sbjct: 12 RIDGRTPDQLREVRITRGWLDHAEGSALIEFGRTRVLCAASFTAGVPRWKQGSGSGWVTA 71 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R RE+V G+ GGR+ EI R+IGR+LR+V+DL ALG I +DCDV+QA Sbjct: 72 EYAMLPRATNSRSPRESVKGKIGGRTHEISRLIGRSLRAVIDLDALGENTIQLDCDVLQA 131 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + +QVL V+AIS G++ P++DL+Y E Sbjct: 132 DGGTRTAAITGAYVALADAISWGKQHTALPAAAQVLTDSVSAISVGIVDDRPLLDLEYRE 191 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D N V+T SG VEVQG+AE A F + A+L+LA A L + Q+DV++ + Sbjct: 192 DVAAGTDMNVVVTGSGSFVEVQGTAEGAPFDRAELGALLDLATGGCAQLAQTQQDVLAQQ 251 >gi|284799568|ref|ZP_05984302.2| tRNA nucleotidyltransferase [Neisseria subflava NJ9703] gi|284797404|gb|EFC52751.1| tRNA nucleotidyltransferase [Neisseria subflava NJ9703] Length = 277 Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 116/232 (50%), Positives = 168/232 (72%), Gaps = 2/232 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 +GR + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEY Sbjct: 42 TGRAADSLRDIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEY 101 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 102 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 161 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + SN ++ VAA+S G++ G P++DLDY EDS Sbjct: 162 GTRTASITGAYVALQIAVDKL--LSNGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDS 219 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ Q+ Sbjct: 220 GCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQ 271 >gi|238760457|ref|ZP_04621595.1| Ribonuclease PH [Yersinia aldovae ATCC 35236] gi|238783915|ref|ZP_04627932.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970] gi|238701352|gb|EEP93931.1| Ribonuclease PH [Yersinia aldovae ATCC 35236] gi|238715154|gb|EEQ07149.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970] Length = 238 Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + S K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAALAQ 238 >gi|238797068|ref|ZP_04640571.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969] gi|238719113|gb|EEQ10926.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969] Length = 238 Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + S K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAALAE 238 >gi|172058161|ref|YP_001814621.1| ribonuclease PH [Exiguobacterium sibiricum 255-15] gi|226736909|sp|B1YJW6|RNPH_EXIS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|171990682|gb|ACB61604.1| ribonuclease PH [Exiguobacterium sibiricum 255-15] Length = 250 Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 120/231 (51%), Positives = 157/231 (67%), Gaps = 2/231 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL R ++ MR+I L V+K+AEGS L+ GDT +L TAT+EEKVP ++R +HGWI Sbjct: 1 MRLDQRAQSDMRKIQLETDVNKHAEGSVLISVGDTRVLCTATVEEKVPPFLRGKRHGWIN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REAV G+Q GR+ EIQR+I RALRSVV+L LG R + IDCDV+Q Sbjct: 61 AEYAMLPRATAQRTGREAVRGKQTGRTMEIQRLISRALRSVVNLEKLGERTVWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG ++AL + + S K + + +G +AA+S G + ++DL Y Sbjct: 121 ADGGTRTAAITGGFLALVLAVDGLIQ-SGKLTDTPIKEG-IAAVSVGKVGTELLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 ED+ DVD N VMT SG IVE+Q + E ATFS+ ML L + I +L+ Sbjct: 179 EDAAADVDLNLVMTSSGKIVELQATGEEATFSRKEMLDMLELGEKGIEELL 229 >gi|21221351|ref|NP_627130.1| ribonuclease PH [Streptomyces coelicolor A3(2)] gi|256787469|ref|ZP_05525900.1| ribonuclease PH [Streptomyces lividans TK24] gi|289771366|ref|ZP_06530744.1| ribonuclease PH [Streptomyces lividans TK24] gi|21759422|sp|Q9S2H7|RNPH_STRCO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|5531353|emb|CAB50985.1| putative ribonuclease PH [Streptomyces coelicolor A3(2)] gi|289701565|gb|EFD68994.1| ribonuclease PH [Streptomyces lividans TK24] Length = 245 Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 113/237 (47%), Positives = 155/237 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT +L A++ E VP W + + GW+TA Sbjct: 3 RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIVDGTPLLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D D N V T G VEVQG+AE F++D +L+LA +L +LQ+ + Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNTLLDLATAGCTELAELQRKAL 239 >gi|257869443|ref|ZP_05649096.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2] gi|257803607|gb|EEV32429.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2] Length = 450 Score = 228 bits (580), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +R + + V K+ EGS ++ FGDT ++ +AT+E++VP ++R++ GW+T Sbjct: 1 MRHDGRKAGSIRPVEIKTNVFKHPEGSVVISFGDTTVICSATIEDRVPPFLRDSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDVIQ Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179 ADGGTRTA+ITGA+VAL + + +N +K H+AAIS G+L + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIDQL--LTNHELTEDPIKEHLAAISVGILPDNTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG +E+QG+ E ATF ML K I +LI QK+ + Sbjct: 179 EEDSAAAVDMNLVMTESGRFIEIQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237 >gi|315645714|ref|ZP_07898838.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453] gi|315279192|gb|EFU42502.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453] Length = 252 Score = 228 bits (580), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 114/238 (47%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR+ +++R ++L+ V+KYAEGS ++ GDT +L TAT++EKVP +++ GW+T Sbjct: 1 MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATQSRNQREANRGKLTGRTMEIQRLIGRALRSVVNLYALGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA+VAL + + + +K + + ++A+IS G+ G ++DL+Y Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAE-QHKLAVFPITD-YLASISVGIAGGQALLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT G VEVQG+ E + FS++ +L L + I +LI+ Q++ + Sbjct: 179 EDSKAKVDMNLVMTGGGKFVEVQGTGEESPFSREELDQILELGEKGIRELIERQQEAL 236 >gi|238794526|ref|ZP_04638134.1| Ribonuclease PH [Yersinia intermedia ATCC 29909] gi|238726106|gb|EEQ17652.1| Ribonuclease PH [Yersinia intermedia ATCC 29909] Length = 238 Score = 227 bits (579), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLV-AAGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + QK V++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAVLAQ 238 >gi|319637683|ref|ZP_07992449.1| ribonuclease PH [Neisseria mucosa C102] gi|317400838|gb|EFV81493.1| ribonuclease PH [Neisseria mucosa C102] Length = 242 Score = 227 bits (579), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 116/232 (50%), Positives = 167/232 (71%), Gaps = 2/232 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 +GR + +R I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEY Sbjct: 7 TGRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ QK Sbjct: 185 GCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQK 236 >gi|227328057|ref|ZP_03832081.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 238 Score = 227 bits (579), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 160/235 (68%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M K + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNQMV-AKGKLK-KNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I +++ QK Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQK 233 >gi|257063633|ref|YP_003143305.1| RNAse PH [Slackia heliotrinireducens DSM 20476] gi|256791286|gb|ACV21956.1| RNAse PH [Slackia heliotrinireducens DSM 20476] Length = 240 Score = 227 bits (579), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 118/238 (49%), Positives = 163/238 (68%), Gaps = 5/238 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R + +R ++L R V K A GSCLVKFGDTH+L AT+EE+VP W +N+ GW+TA Sbjct: 5 RVDNRADRAIRPVTLERGVMKNATGSCLVKFGDTHVLCAATIEERVPGWRKNSGLGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDVIQ 120 EY MLP ST R RE GR+ GRSQEI+R+IGR+LR+V D+ A+G ++ +DCDV+Q Sbjct: 65 EYAMLPASTSKRTPRE-YKGRK-GRSQEIERLIGRSLRNVCDMGAMGGEVLMTVDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVA +D + M S K + + + G VAAIS GM+ G ++DLDY Sbjct: 123 ADGGTRTASITGAWVAAYDAFE-MWRKSGKCKRNPLF-GQVAAISVGMVGGRLLLDLDYR 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS ++D N VM G +E+QG+ E+A F + ML++A+ I +L+ LQ+ + Sbjct: 181 EDSKAEIDMNVVMNAKGEFIEIQGTGEQAPFGKATLDDMLSMAQSGIEELLALQRAAV 238 >gi|119962182|ref|YP_948291.1| ribonuclease PH [Arthrobacter aurescens TC1] gi|119949041|gb|ABM07952.1| ribonuclease PH [Arthrobacter aurescens TC1] Length = 252 Score = 227 bits (579), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 163/239 (68%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R IS+TR SK AEGS L++FG+T +L TA+L E VP W++ GW+T Sbjct: 11 IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q Sbjct: 71 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL + ++ + + ++ L +AA+S G++ G P++DL Y Sbjct: 131 ADGGTRTAAITGAYVALAEAIRFARENKLIARNAEPLVDTIAAVSVGIIDGVPMLDLPYV 190 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D N V+T SG VEVQG+AE A F +D A+L+LA L +Q++ ++ Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALLGTTQLSAIQRETLA 249 >gi|256396655|ref|YP_003118219.1| ribonuclease PH [Catenulispora acidiphila DSM 44928] gi|256362881|gb|ACU76378.1| ribonuclease PH [Catenulispora acidiphila DSM 44928] Length = 243 Score = 227 bits (579), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 113/212 (53%), Positives = 147/212 (69%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ Q+R ++LTR+ S + EGS LV+FG T +L TA++ E VP W+R + GW+TA Sbjct: 5 RVDGRKVGQLRPVTLTRKWSIHPEGSVLVEFGQTKVLCTASVTEGVPRWLRGSGKGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+QEI R+IGRALR+VVD ALG II+DCDV+QA Sbjct: 65 EYAMLPRATNTRGDRESVKGKVGGRTQEISRLIGRALRAVVDTKALGENTIIVDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + M D + L G V+A+S G++ G P++DL Y E Sbjct: 125 DGGTRTAAITGAYVALQDAVTWMRDKKMIKASREPLAGSVSAVSVGIIDGVPMLDLCYEE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 D + D N V T G VEVQG+AE A F + Sbjct: 185 DVRAETDMNVVCTADGKFVEVQGTAEGAPFDR 216 >gi|121635173|ref|YP_975418.1| ribonuclease PH [Neisseria meningitidis FAM18] gi|161870362|ref|YP_001599532.1| ribonuclease PH [Neisseria meningitidis 053442] gi|218768484|ref|YP_002342996.1| ribonuclease PH [Neisseria meningitidis Z2491] gi|304387097|ref|ZP_07369348.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091] gi|21759416|sp|Q9JTN2|RNPH_NEIMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228298|sp|A1KUT9|RNPH_NEIMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043768|sp|A9M0T5|RNPH_NEIM0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|120866879|emb|CAM10638.1| ribonuclease PH [Neisseria meningitidis FAM18] gi|121052492|emb|CAM08831.1| ribonuclease PH [Neisseria meningitidis Z2491] gi|161595915|gb|ABX73575.1| ribonuclease PH [Neisseria meningitidis 053442] gi|304338846|gb|EFM04949.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091] gi|308389647|gb|ADO31967.1| ribonuclease PH [Neisseria meningitidis alpha710] gi|319410733|emb|CBY91115.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria meningitidis WUE 2594] gi|325132653|gb|EGC55339.1| ribonuclease PH [Neisseria meningitidis M6190] gi|325134681|gb|EGC57321.1| ribonuclease PH [Neisseria meningitidis M13399] gi|325138569|gb|EGC61132.1| ribonuclease PH [Neisseria meningitidis ES14902] gi|325198624|gb|ADY94080.1| ribonuclease PH [Neisseria meningitidis G2136] gi|325201806|gb|ADY97260.1| ribonuclease PH [Neisseria meningitidis M01-240149] gi|325205751|gb|ADZ01204.1| ribonuclease PH [Neisseria meningitidis M04-240196] gi|325208441|gb|ADZ03893.1| ribonuclease PH [Neisseria meningitidis NZ-05/33] Length = 242 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 171/239 (71%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T Sbjct: 5 IRIS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240 >gi|319942267|ref|ZP_08016582.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B] gi|319804140|gb|EFW01040.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B] Length = 277 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 118/240 (49%), Positives = 157/240 (65%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R + +TRR +KYAEGS L+ GDTH+L TA++ VP ++R GW+TA Sbjct: 35 RPDGRAVDALRPVEITRRFTKYAEGSVLMCAGDTHVLCTASVTVGVPNFLRGKGEGWVTA 94 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYG+LPRSTG R REA G+Q GR+QEIQR+IGR+LR+VVD LG I IDCDV+QA Sbjct: 95 EYGLLPRSTGTRTDREAARGKQTGRTQEIQRLIGRSLRAVVDRKKLGEHTIQIDCDVLQA 154 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAW+AL D + M + + V+A+S GM G P++DL+Y E Sbjct: 155 DGGTRCASITGAWIALRDAVDWM--LAKGMISEDPILAQVSAVSVGMWSGEPVLDLNYAE 212 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D D N VMT +G VE+QG+AE FS+ +L LAK A+L Q+ ++ + Sbjct: 213 DSASDTDMNVVMTSAGKYVEIQGTAEGDPFSEGDLAKLLALAKKGNAELAAFQRKALTEK 272 >gi|325128546|gb|EGC51419.1| ribonuclease PH [Neisseria meningitidis N1568] gi|325143439|gb|EGC65766.1| ribonuclease PH [Neisseria meningitidis M01-240013] Length = 242 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 115/236 (48%), Positives = 168/236 (71%), Gaps = 2/236 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEY Sbjct: 7 TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240 >gi|256004871|ref|ZP_05429845.1| ribonuclease PH [Clostridium thermocellum DSM 2360] gi|281416900|ref|ZP_06247920.1| ribonuclease PH [Clostridium thermocellum JW20] gi|255991181|gb|EEU01289.1| ribonuclease PH [Clostridium thermocellum DSM 2360] gi|281408302|gb|EFB38560.1| ribonuclease PH [Clostridium thermocellum JW20] gi|316941052|gb|ADU75086.1| ribonuclease PH [Clostridium thermocellum DSM 1313] Length = 263 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 163/240 (67%), Gaps = 6/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR ++ +R + +TR K+AEGS L++ GDT ++ TAT+++KVP + +NT GW+T Sbjct: 2 LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ + GRSQEIQR+IGRALRSVV+L+ LG R+IIIDCDVIQ Sbjct: 62 AEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTA+ITG +VAL D + + D K ++ L AA+S G++ G ++DL Sbjct: 122 ADGGTRTASITGGFVALVDACKKLVDDGIIEKIPVTDFL----AAVSVGIVDGVEMLDLC 177 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS D N VMT G +E+Q + E+ F ++ F +L+ A+ I+ LI++QKD + Sbjct: 178 YMEDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDAL 237 >gi|237743440|ref|ZP_04573921.1| ribonuclease ph [Fusobacterium sp. 7_1] gi|229433219|gb|EEO43431.1| ribonuclease ph [Fusobacterium sp. 7_1] Length = 434 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LIKLQ ++I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|312134722|ref|YP_004002060.1| ribonuclease ph [Caldicellulosiruptor owensensis OL] gi|311774773|gb|ADQ04260.1| ribonuclease PH [Caldicellulosiruptor owensensis OL] Length = 258 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRGYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS D F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEVQKEVLGQ 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|293189253|ref|ZP_06607976.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309] gi|292821716|gb|EFF80652.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309] Length = 255 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 112/235 (47%), Positives = 157/235 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R +S+TR S EGS L++FG+T +L A+ E VP W R++ GW+T Sbjct: 6 LRADGRTPSQLRPVSITRGWSGTGEGSILIEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R RE+V G+ GGR+QEI R+IGR+LR +VD+SALG I++DCDV++ Sbjct: 66 GEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + ++ ++VL ++AIS G++ G P++DL Y Sbjct: 126 ADGGTRTAAITGAYVALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYV 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED + D N V T G +EVQG+AE A F++D +L+LA A L + QK Sbjct: 186 EDVRAETDMNVVQTGDGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQK 240 >gi|37928170|pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph T125a Mutant From Aquifex Aeolicus Length = 255 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 6/239 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCL--QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGG RTAAITGA+VA+ D + H E + +K VAA+S G++ ++DL+ Sbjct: 121 ADGGARTAAITGAFVAVADAIIKLHKEGIIEETP----IKDFVAAVSVGIVNDRILLDLN 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK + Sbjct: 177 FEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235 >gi|225175207|ref|ZP_03729203.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1] gi|225169383|gb|EEG78181.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1] Length = 239 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 6/239 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ ++MR + +T KY EGS L++ GDT ++ TA++EEKVP ++R GW+T Sbjct: 1 MRVDGRRTDEMRPLKITPEFLKYPEGSVLIEVGDTRVICTASVEEKVPPFLRGENKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE G+ GRS EIQR+IGRALRSVVDL ALG R + +DCDV+Q Sbjct: 61 AEYAMLPRATQIRTMRE--RGKISGRSSEIQRLIGRALRSVVDLKALGERTVWVDCDVVQ 118 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTAAI+G++VAL+ L + LS+V + ++AA S G++ ++DL + Sbjct: 119 ADGGTRTAAISGSFVALYLALSKLVAAGT---LSEVPVTDYLAATSIGIVDDKLMLDLAF 175 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD N VMT SG+IVEVQG+AE A FS+ M++LA I +++ QK ++ Sbjct: 176 SEDSKADVDMNVVMTGSGNIVEVQGTAEGAAFSRQAMDEMMDLAAKGIDEIVDYQKRLL 234 >gi|256824846|ref|YP_003148806.1| RNAse PH [Kytococcus sedentarius DSM 20547] gi|256688239|gb|ACV06041.1| RNAse PH [Kytococcus sedentarius DSM 20547] Length = 288 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 111/224 (49%), Positives = 151/224 (67%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R++ +TR +A GS L++FG T +L A+ + VP W++ GW+T Sbjct: 23 RHDGRAPDQLRDVRITRGWLDHAAGSVLIEFGRTRVLCAASFQPGVPRWLKGQGTGWVTG 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GR+QEI R++GRALR+ VD SALG I+IDCDV+QA Sbjct: 83 EYAMLPAATHTRSDRESVKGKVKGRTQEISRLLGRALRAAVDTSALGENTIVIDCDVLQA 142 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVAL D + + + +QVL+ + AIS G++ G P++DLDY E Sbjct: 143 DGGTRTAAITGAWVALADAVAAGKASGDIPANAQVLRDSIQAISVGIVDGQPVLDLDYPE 202 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 DS D N VMT +G +VEVQG+AE TF + A+L+LA+D Sbjct: 203 DSGAGADMNVVMTGAGELVEVQGTAEGQTFDRAMLNALLDLAQD 246 >gi|227494822|ref|ZP_03925138.1| ribonuclease PH [Actinomyces coleocanis DSM 15436] gi|226831274|gb|EEH63657.1| ribonuclease PH [Actinomyces coleocanis DSM 15436] Length = 246 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 116/242 (47%), Positives = 162/242 (66%), Gaps = 5/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R + +TR AEGSCL++FG+T +L A+L E VP W + + GW+TA Sbjct: 5 RADGRANNQLRPVKITRNWIANAEGSCLIEFGNTRVLCVASLTEGVPRWRQGSGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+V G+ GGR+ EI R+IGR+LR+VVD ++LG I++DCDV+QA Sbjct: 65 EYSMLPRATSQRSQRESVKGKIGGRTHEISRLIGRSLRAVVDTASLGENTIVLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL----SQVLKGHVAAISCGMLCGYPIVDL 177 DGGTRTA+ITGA+VAL D ++ + + L +VLK VAAIS G++ G P +DL Sbjct: 125 DGGTRTASITGAYVALADAIKWGQK-NGLIPLDKAHQKVLKDSVAAISVGIIDGEPRLDL 183 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y ED + D N V+T SG +EVQG+AE A F++ A+L+LA+ +L Q+ Sbjct: 184 PYEEDVRAETDMNVVVTGSGEFIEVQGTAEHAPFTRAELGALLDLAEGGCKELAVFQEVA 243 Query: 238 IS 239 +S Sbjct: 244 LS 245 >gi|297194142|ref|ZP_06911540.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486] gi|197721967|gb|EDY65875.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486] Length = 244 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/237 (47%), Positives = 153/237 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA+ E VP W + + GW+T+ Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIAWAQAKKIVKPGRKPLTGTVAAVSVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V T G VEVQG+AE F + A+L+LA ADL LQ + + Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLATGGCADLAALQAEAL 239 >gi|254805268|ref|YP_003083489.1| ribonuclease PH [Neisseria meningitidis alpha14] gi|254668810|emb|CBA06795.1| ribonuclease PH [Neisseria meningitidis alpha14] gi|325136604|gb|EGC59205.1| ribonuclease PH [Neisseria meningitidis M0579] Length = 242 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 115/236 (48%), Positives = 168/236 (71%), Gaps = 2/236 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEY Sbjct: 7 TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240 >gi|256026996|ref|ZP_05440830.1| ribonuclease PH [Fusobacterium sp. D11] gi|289764980|ref|ZP_06524358.1| ribonuclease ph [Fusobacterium sp. D11] gi|289716535|gb|EFD80547.1| ribonuclease ph [Fusobacterium sp. D11] Length = 428 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LIKLQ ++I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|268593302|ref|ZP_06127523.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131] gi|291310999|gb|EFE51452.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131] Length = 237 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ +QMR I++TR +K+AEGS L++FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPADRQADQMRPITITRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNQREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GA VAL D L +M + K S LK VAA+S G++ + DL+Y Sbjct: 121 ADGGTRTAAISGACVALVDALNNMVE-QGKIAKSP-LKSMVAAVSVGIVNQEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM D G ++EVQG+AE FS + A+L LAK + + + Q++ + Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLALLALAKTGLNTIFEAQREAL 236 >gi|320106016|ref|YP_004181606.1| ribonuclease PH [Terriglobus saanensis SP1PR4] gi|319924537|gb|ADV81612.1| ribonuclease PH [Terriglobus saanensis SP1PR4] Length = 246 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 158/238 (66%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R GR Q+R I LT AEGS L++ G+T +L AT+E VP W+RN+ GW+T Sbjct: 9 FRPGGRTAAQLRSIKLTPDYVATAEGSVLIEAGNTRVLCNATIEPSVPGWLRNSGKGWVT 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GGR+ EIQR+IGR+LRSVVDL ALG R II+DCDV+Q Sbjct: 69 AEYSMLPRATLTRTPRESERGKIGGRTHEIQRLIGRSLRSVVDLKALGERMIILDCDVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL L + + +S LK VAA S G++ G ++DL Y Sbjct: 129 ADGGTRTAAITGACVALAMALDKLV-AAGTLPVSP-LKQLVAATSVGIVDGNILLDLAYE 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD N VMT+ G +VEVQ +AE T+++ A+L++A + +L+ Q+ V+ Sbjct: 187 EDSRADVDMNVVMTEDGGLVEVQATAEHNTYTRPQLDALLDIAASGVKNLLVHQRSVL 244 >gi|269123373|ref|YP_003305950.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112] gi|268314699|gb|ACZ01073.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112] Length = 231 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 113/238 (47%), Positives = 152/238 (63%), Gaps = 12/238 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ N++REI +TR KY EGS L++FG+T ++ T+EEKVP +++N GW+T Sbjct: 1 MRTNNRKNNELREIKITREYIKYPEGSVLIEFGNTKVICNVTVEEKVPPFLKNLGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R KREA G+ GR+ EIQR+IGR+LR+ +DL LG R +I+DCDVIQ Sbjct: 61 AEYSMLPRATNTRNKREASQGKLSGRTMEIQRLIGRSLRAALDLKKLGERTLIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL-----KGHVAAISCGMLCGYPIV 175 ADGGTRTA+ITG ++A ME NK LS +L + VAAIS G + + Sbjct: 121 ADGGTRTASITGGYLA-------MEIAINKLILSGLLNENPIRAKVAAISVGKVNNELFL 173 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 DL++ EDS DVD N VM G +E+QG+ E TF++ + LA L KL Sbjct: 174 DLEFYEDSHADVDMNIVMNSKGEFIEIQGTGEDTTFTKQELDKFIELASLGFEKLFKL 231 >gi|125972712|ref|YP_001036622.1| ribonuclease PH [Clostridium thermocellum ATCC 27405] gi|125712937|gb|ABN51429.1| RNAse PH [Clostridium thermocellum ATCC 27405] Length = 263 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 163/240 (67%), Gaps = 6/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR ++ +R + +TR K+AEGS L++ GDT ++ TAT+++KVP + +NT GW+T Sbjct: 2 LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ + GRSQEIQR+IGRALRSVV+L+ LG R+IIIDCDVIQ Sbjct: 62 AEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTA+ITG +VAL D + + D K ++ L AA+S G++ G ++DL Sbjct: 122 ADGGTRTASITGGFVALVDACKKLVDDGIIEKIPVTDFL----AAVSVGIVDGEEMLDLC 177 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS D N VMT G +E+Q + E+ F ++ F +L+ A+ I+ LI++QKD + Sbjct: 178 YMEDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDAL 237 >gi|225874384|ref|YP_002755843.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196] gi|225793778|gb|ACO33868.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196] Length = 246 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 114/239 (47%), Positives = 158/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ ++MR + LT + EGS L++ G T +L AT+E+ VP W+RN+ GW+TA Sbjct: 8 RASGRRPDEMRPVKLTAGYTSMPEGSVLIEVGHTRVLCAATVEQGVPGWMRNSGRGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R RE+ G+ GGR+ EIQR+IGR+LR+VVD+ ALG R +I+DCDV+QA Sbjct: 68 EYGMLPRATLTRTARESERGKVGGRTHEIQRLIGRSLRAVVDMQALGERTVILDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA AL Q + + L+ VAA S G++ G ++DL Y E Sbjct: 128 DGGTRTAAITGACTALAIACQRLVKAGTLK--ASPLRQLVAATSVGIVEGTTLLDLAYEE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N VMT+ G +VEVQ +AER F + M++ A+ I +L+ LQ+ + + Sbjct: 186 DSQAEVDMNLVMTEDGGLVEVQATAERQAFPRARMMEMMDYAEKGIRELLALQRAAMES 244 >gi|294101305|ref|YP_003553163.1| ribonuclease PH [Aminobacterium colombiense DSM 12261] gi|293616285|gb|ADE56439.1| ribonuclease PH [Aminobacterium colombiense DSM 12261] Length = 260 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 117/240 (48%), Positives = 161/240 (67%), Gaps = 6/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N++R IS R + YAEG+ L FGDT ++ TA++E++VP ++R + GWI+ Sbjct: 6 LRSDGRKFNEIRPISFQRHFTCYAEGAVLACFGDTKVICTASVEDRVPPFLRGSGQGWIS 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R G GRS EIQR+IGR+LR+ DLS LG R I +DCDVIQ Sbjct: 66 AEYAMLPRATAERTSRMTSKGAISGRSHEIQRLIGRSLRASADLSLLGERTIWLDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTAAI+GA+VAL D ++ + +D K +K VAA+S G + G ++DL Sbjct: 126 ADGGTRTAAISGAFVALFDAMRCLKAQDVIEKIP----VKSFVAAVSVGKIEGSLLLDLC 181 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS DVD N VM ++E+QG+ ER TF++D F AML+LA+D I ++ Q +V+ Sbjct: 182 YEEDSCADVDCNVVMNGDKQLIEIQGTGERGTFARDEFDAMLDLAEDGIQTIMFSQAEVL 241 >gi|51891481|ref|YP_074172.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium thermophilum IAM 14863] gi|61215887|sp|Q67SL5|RNPH_SYMTH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|51855170|dbj|BAD39328.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium thermophilum IAM 14863] Length = 273 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 123/236 (52%), Positives = 166/236 (70%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++MR + +TR + +AEGS L++ G T ++ TATLE++VP ++R GWIT Sbjct: 1 MRQDGRLPHEMRPVRITRHYNIHAEGSVLIEVGRTRVICTATLEDRVPPFLRGRGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R REA GRQGGR+ EIQR+IGRALRSV+DL+ALG R +IIDCDVIQ Sbjct: 61 AEYGMLPRATGQRTAREAARGRQGGRTMEIQRLIGRALRSVIDLAALGERTLIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ D L + +L +K ++AA S G++ G P++DL Y Sbjct: 121 ADGGTRTASITGAYVAMVDALAGLRAAGLIDRLP--VKDYLAATSVGVVGGVPVLDLTYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD N VMT SG +VE+QG+ E F++ +L LA+ + L+ LQ++ Sbjct: 179 EDSRAAVDLNLVMTGSGEVVEIQGTGEERPFTRRELEELLALAESGVRRLVALQRE 234 >gi|148272475|ref|YP_001222036.1| ribonuclease PH [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830405|emb|CAN01340.1| ribonuclease PH (tRNA nucleotidyltransferase) [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 245 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 113/212 (53%), Positives = 146/212 (68%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+REI++ R S+ AEGS L+ FG T +L TA+ +VP W + GW+TA Sbjct: 7 RHDGRTADQLREITIERNWSEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG I+IDCDV+QA Sbjct: 67 EYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L+ + Q + LK VAA+S G++ G P++DL Y E Sbjct: 127 DGGTRTAAITGAYVALADALEWGREKKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 D + D N VMT SG VEVQG+AE A F + Sbjct: 187 DVRAETDMNVVMTGSGSFVEVQGTAEGAPFDR 218 >gi|37928168|pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph R86a Mutant From Aquifex Aeolicus Length = 255 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 6/239 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GG + EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGATHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCL--QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTAAITGA+VA+ D + H E + +K VAA+S G++ ++DL+ Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHKEGIIEETP----IKDFVAAVSVGIVNDRILLDLN 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK + Sbjct: 177 FEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235 >gi|37928172|pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph R126a Mutant From Aquifex Aeolicus Length = 255 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 6/239 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCL--QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGT TAAITGA+VA+ D + H E + +K VAA+S G++ ++DL+ Sbjct: 121 ADGGTATAAITGAFVAVADAIIKLHKEGIIEETP----IKDFVAAVSVGIVNDRILLDLN 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK + Sbjct: 177 FEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235 >gi|163783654|ref|ZP_02178642.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1] gi|159881059|gb|EDP74575.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1] Length = 255 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 113/235 (48%), Positives = 160/235 (68%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E+++R + + R + EGSCL++FGDT ++ TA++ E VP +++ GWIT Sbjct: 1 MRKDGRREDELRPVKIVRDFLSHPEGSCLIEFGDTKVICTASVTESVPPFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GR+ EIQRMIGRA+R+ VDL+ LG R + +DCDVIQ Sbjct: 61 AEYSMLPRATHTRNIRESVQGKISGRTHEIQRMIGRAMRTAVDLTKLGERTLWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ D L + + + S +K VAA+S G++ G P++DL++ Sbjct: 121 ADGGTRTASITGAFVAVADALIKLYE--DGIIQSVPIKDFVAAVSVGIVNGKPLLDLNFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD N V T G EVQ E TFS+D +L+LA I++L++LQ+ Sbjct: 179 EDSMAQVDMNVVGTGEGRFSEVQSMGEEYTFSRDELDNLLDLALKGISELVELQR 233 >gi|238764323|ref|ZP_04625274.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638] gi|238697474|gb|EEP90240.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638] Length = 238 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 114/212 (53%), Positives = 151/212 (71%), Gaps = 2/212 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPAGRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLV-AAGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212 EDS + D N VM + G ++EVQG+AE FS Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFS 210 >gi|110799614|ref|YP_696926.1| ribonuclease PH [Clostridium perfringens ATCC 13124] gi|123344527|sp|Q0TN64|RNPH_CLOP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110674261|gb|ABG83248.1| ribonuclease PH [Clostridium perfringens ATCC 13124] Length = 248 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 114/243 (46%), Positives = 162/243 (66%), Gaps = 6/243 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R +RE + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q Sbjct: 61 AEYNMLPRSTQSRKQREINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRT +ITG++VAL D + H + N + ++ V+A+S G++ ++DL Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYP----IRHFVSAVSVGIVGEEKVLDLC 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y ED VD N VMT+ G +E+QG+ E FS+ +LNLA+ +I+ QKD + Sbjct: 177 YEEDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDAL 236 Query: 239 SNE 241 + Sbjct: 237 KTD 239 >gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium jeikeium K411] gi|68263167|emb|CAI36655.1| ribonuclease PH [Corynebacterium jeikeium K411] Length = 256 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 110/241 (45%), Positives = 161/241 (66%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TR + GS LV+FG+T ++ TA++EE VP + +++ GW+TA Sbjct: 18 RADGRATDELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R+ RE++ G+ GR+QEI R++GRALR+ VDL LG + IDCDV+QA Sbjct: 78 EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L ++ + Q L+ VAA+S G++ G P +DL Y E Sbjct: 138 DGGTRTAAITGAYVALADALAVLQ--ARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEE 195 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N MT G VE+QG+ E A F+++ +L+LA+ + +LI+ Q+ ++ E Sbjct: 196 DSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQE 255 Query: 242 V 242 + Sbjct: 256 L 256 >gi|228993220|ref|ZP_04153141.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442] gi|228999269|ref|ZP_04158849.1| Ribonuclease PH [Bacillus mycoides Rock3-17] gi|229006824|ref|ZP_04164457.1| Ribonuclease PH [Bacillus mycoides Rock1-4] gi|228754446|gb|EEM03858.1| Ribonuclease PH [Bacillus mycoides Rock1-4] gi|228760466|gb|EEM09432.1| Ribonuclease PH [Bacillus mycoides Rock3-17] gi|228766546|gb|EEM15188.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442] Length = 245 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 162/241 (67%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GRQ ++R I L K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGRQAAELRNIHLHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEDQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT GH VEVQG+ E ATFS+ +L+ A++ I LI+ QK+ + Sbjct: 179 AEDSQADVDMNVIMTGKGHFVEVQGTGEEATFSRAELNELLDAAENGILQLIEKQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|296314065|ref|ZP_06864006.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768] gi|296839317|gb|EFH23255.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768] Length = 241 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 114/232 (49%), Positives = 165/232 (71%), Gaps = 2/232 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEY Sbjct: 7 TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILTENPIREAVAAVSAGVVNGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ QK Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIRELVRYQK 236 >gi|237741270|ref|ZP_04571751.1| ribonuclease ph [Fusobacterium sp. 4_1_13] gi|229430802|gb|EEO41014.1| ribonuclease ph [Fusobacterium sp. 4_1_13] Length = 434 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + D + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDKIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|210621777|ref|ZP_03292806.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275] gi|210154541|gb|EEA85547.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275] Length = 449 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 157/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL R +++R + +T +KYA GS L++ G+T ++ TAT+E+KVP ++RNT GWI A Sbjct: 3 RLGNRANDEIRPVKITTNFTKYAAGSVLIEMGETKVICTATVEDKVPPFLRNTGTGWINA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R R++V G+ GR+QEIQR+IGRA+RSV++L LG R I +DCDVIQA Sbjct: 63 EYSMLPSSTQQRKIRDSVRGKIDGRTQEIQRLIGRAIRSVIELDLLGERTIWVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG +VA + + NK +K V+AIS G+L I+DL Y E Sbjct: 123 DGGTRTASITGGFVAAAQAIYGL--YQNKEIKKLPIKNFVSAISAGVLNDEHILDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS VD NFVMTD G VEVQG+ E A FS++ +L L + +LIK+Q+ I Sbjct: 181 DSAAKVDMNFVMTDKGEFVEVQGTGEEAPFSREDLNKLLELGEKGNKELIKIQRAAIP 238 >gi|241760285|ref|ZP_04758380.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114] gi|241319163|gb|EER55641.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114] Length = 242 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/232 (49%), Positives = 167/232 (71%), Gaps = 2/232 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 +GR + +R I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEY Sbjct: 7 TGRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ Q+ Sbjct: 185 GCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQ 236 >gi|22124017|ref|NP_667440.1| ribonuclease PH [Yersinia pestis KIM 10] gi|45439910|ref|NP_991449.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001] gi|51594399|ref|YP_068590.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953] gi|108809489|ref|YP_653405.1| ribonuclease PH [Yersinia pestis Antiqua] gi|108813966|ref|YP_649733.1| ribonuclease PH [Yersinia pestis Nepal516] gi|145601101|ref|YP_001165177.1| ribonuclease PH [Yersinia pestis Pestoides F] gi|150260892|ref|ZP_01917620.1| ribonuclease PH [Yersinia pestis CA88-4125] gi|153946899|ref|YP_001399057.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758] gi|162421592|ref|YP_001604689.1| ribonuclease PH [Yersinia pestis Angola] gi|165926075|ref|ZP_02221907.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016] gi|165936276|ref|ZP_02224845.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275] gi|166011471|ref|ZP_02232369.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001] gi|166213648|ref|ZP_02239683.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004] gi|167402127|ref|ZP_02307604.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419312|ref|ZP_02311065.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426642|ref|ZP_02318395.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468220|ref|ZP_02332924.1| ribonuclease PH [Yersinia pestis FV-1] gi|170026367|ref|YP_001722872.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII] gi|186893387|ref|YP_001870499.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+] gi|218927265|ref|YP_002345140.1| ribonuclease PH [Yersinia pestis CO92] gi|229836156|ref|ZP_04456324.1| ribonuclease PH [Yersinia pestis Pestoides A] gi|229839893|ref|ZP_04460052.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841975|ref|ZP_04462130.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195] gi|229904496|ref|ZP_04519607.1| ribonuclease PH [Yersinia pestis Nepal516] gi|270488496|ref|ZP_06205570.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27] gi|294502151|ref|YP_003566213.1| ribonuclease PH [Yersinia pestis Z176003] gi|21759404|sp|Q8ZJP8|RNPH_YERPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215882|sp|Q66GE1|RNPH_YERPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|122382629|sp|Q1C262|RNPH_YERPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|122384026|sp|Q1CCZ7|RNPH_YERPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228325|sp|A4TSE2|RNPH_YERPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166991087|sp|A7FCS9|RNPH_YERP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736955|sp|B2JYM8|RNPH_YERPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736956|sp|A9R668|RNPH_YERPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736957|sp|B1JQX8|RNPH_YERPY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|21956760|gb|AAM83691.1|AE013610_3 RNase PH [Yersinia pestis KIM 10] gi|45434765|gb|AAS60326.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001] gi|51587681|emb|CAH19281.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953] gi|108777614|gb|ABG20133.1| RNAse PH [Yersinia pestis Nepal516] gi|108781402|gb|ABG15460.1| RNAse PH [Yersinia pestis Antiqua] gi|115345876|emb|CAL18734.1| ribonuclease PH [Yersinia pestis CO92] gi|145212797|gb|ABP42204.1| RNAse PH [Yersinia pestis Pestoides F] gi|149290300|gb|EDM40377.1| ribonuclease PH [Yersinia pestis CA88-4125] gi|152958394|gb|ABS45855.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758] gi|162354407|gb|ABX88355.1| ribonuclease PH [Yersinia pestis Angola] gi|165915890|gb|EDR34498.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275] gi|165921935|gb|EDR39112.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016] gi|165989617|gb|EDR41918.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001] gi|166205050|gb|EDR49530.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004] gi|166963306|gb|EDR59327.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048502|gb|EDR59910.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054331|gb|EDR64148.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752901|gb|ACA70419.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII] gi|186696413|gb|ACC87042.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+] gi|229678614|gb|EEO74719.1| ribonuclease PH [Yersinia pestis Nepal516] gi|229690285|gb|EEO82339.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195] gi|229696259|gb|EEO86306.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706604|gb|EEO92610.1| ribonuclease PH [Yersinia pestis Pestoides A] gi|262360230|gb|ACY56951.1| ribonuclease PH [Yersinia pestis D106004] gi|262364176|gb|ACY60733.1| ribonuclease PH [Yersinia pestis D182038] gi|270337000|gb|EFA47777.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27] gi|294352610|gb|ADE62951.1| ribonuclease PH [Yersinia pestis Z176003] gi|320013398|gb|ADV96969.1| ribonuclease PH [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 238 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + S K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L+LA+ I + + QK + + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQKAALES 238 >gi|318057177|ref|ZP_07975900.1| ribonuclease PH [Streptomyces sp. SA3_actG] gi|318078066|ref|ZP_07985398.1| ribonuclease PH [Streptomyces sp. SA3_actF] gi|333024799|ref|ZP_08452863.1| putative ribonuclease PH [Streptomyces sp. Tu6071] gi|332744651|gb|EGJ75092.1| putative ribonuclease PH [Streptomyces sp. Tu6071] Length = 241 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/237 (48%), Positives = 155/237 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + L+ V+A+S G++ P +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V T G VEVQG+AE A F + A+L+LA ADL LQ++ + Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQREAL 239 >gi|84494376|ref|ZP_00993495.1| ribonuclease PH [Janibacter sp. HTCC2649] gi|84383869|gb|EAP99749.1| ribonuclease PH [Janibacter sp. HTCC2649] Length = 254 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 117/236 (49%), Positives = 153/236 (64%), Gaps = 2/236 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +REI +TR +AEGS L++FG T +L A+ E VP W++ GW+T+ Sbjct: 7 RHDGRAPEDLREIRITRNWLDHAEGSVLIEFGRTRVLCAASFTEGVPRWLKGKGTGWVTS 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+ G+ GGR+ EI R+IGRALR+V+D ALG I++DCDV+QA Sbjct: 67 EYEMLPRSTNTRSDRESRKGKVGGRTHEISRLIGRALRAVIDTKALGENTIVVDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D ++ + +Q L +AA+S G++ G P++DLDY E Sbjct: 127 DGGTRTASITGAYVALVDAIEDARAKGLIAKNAQPLLDSIAAVSVGVVGGLPVLDLDYPE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAE--RATFSQDHFFAMLNLAKDRIADLIKLQK 235 DST D D N VMT SG VEVQG+AE A F +D +L+LA A L QK Sbjct: 187 DSTADTDMNVVMTGSGRYVEVQGTAEGADAAFDRDRLNELLDLAAAGCATLTLEQK 242 >gi|261365535|ref|ZP_05978418.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996] gi|288565953|gb|EFC87513.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996] Length = 246 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 116/235 (49%), Positives = 167/235 (71%), Gaps = 2/235 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R GW+TAEY Sbjct: 7 TSRDADSLRDIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALQIAVNKL--ISDDLISENPIREAVAAVSAGVVGGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N VMT SG I+E+QG+AE A FS D ++ LA+ IA+L Q++ + Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELTAHQQNAL 239 >gi|256846413|ref|ZP_05551870.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2] gi|256718182|gb|EEU31738.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2] Length = 434 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + D + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDKIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|312622868|ref|YP_004024481.1| ribonuclease ph [Caldicellulosiruptor kronotskyensis 2002] gi|312203335|gb|ADQ46662.1| ribonuclease PH [Caldicellulosiruptor kronotskyensis 2002] Length = 258 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPVTDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS D F +L L K I +I++Q++V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEIQREVLGE 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|302871436|ref|YP_003840072.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47] gi|302574295|gb|ADL42086.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47] Length = 258 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEVLGQ 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|294784524|ref|ZP_06749813.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27] gi|294487740|gb|EFG35099.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27] Length = 434 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GWIT Sbjct: 2 LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + D + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I I+LQ +I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|302521564|ref|ZP_07273906.1| ribonuclease PH [Streptomyces sp. SPB78] gi|302430459|gb|EFL02275.1| ribonuclease PH [Streptomyces sp. SPB78] Length = 241 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/237 (48%), Positives = 155/237 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDPRALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + L+ V+A+S G++ P +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V T G VEVQG+AE A F + A+L+LA ADL LQ++ + Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQREAL 239 >gi|146296019|ref|YP_001179790.1| ribonuclease PH [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166228275|sp|A4XI64|RNPH_CALS8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145409595|gb|ABP66599.1| RNAse PH [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 258 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRSYNELRPIKITRNFIKYAEGSCLIEMGNTKVIITATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R II+DCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIILDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D +K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--DKVIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE F+Q+ F +L L K I +I++Q++V+ Sbjct: 179 EDSKASVDMNLVMNDKGEFIEIQGTAEGGAFTQEQFEKLLELGKQGIQKIIEIQREVLGE 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|328956949|ref|YP_004374335.1| ribonuclease PH [Carnobacterium sp. 17-4] gi|328673273|gb|AEB29319.1| ribonuclease PH [Carnobacterium sp. 17-4] Length = 454 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 5/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++ R +++ K+ EGS LV FGDT ++ AT+E +VP +++ GW+ Sbjct: 1 MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETRVPRFLKGMGSGWVH 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+I R+LRS +DL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSSIDLEALGERSITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLC-GYPIVDLD 178 ADGGTRTA+ITGA+VAL +Q + D +L++ +K +VAAIS G+L G ++DL+ Sbjct: 121 ADGGTRTASITGAFVALKLAIQTLLDSG---ELTESPIKENVAAISVGILKDGEAVLDLN 177 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS+ +VD N VMT G VE+QG+ E +TFS + ML K I +LI++Q D Sbjct: 178 YLEDSSAEVDMNLVMTSLGQFVEIQGTGEESTFSSEQLSVMLEFGKKGINELIQVQDDAF 237 >gi|163840218|ref|YP_001624623.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209] gi|162953694|gb|ABY23209.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209] Length = 250 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/238 (48%), Positives = 162/238 (68%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R+IS+TR S AEGS L++FG+T +L T++L E VP W+R GW+T Sbjct: 10 LRADGRTADQLRDISITRGWSSQAEGSALIEFGNTRVLCTSSLTEGVPRWLRGEGRGWVT 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q Sbjct: 70 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL + ++ + +Q L VAA+S G++ P++DL Y Sbjct: 130 ADGGTRTAAITGAYVALAESIRFARENKLISATAQPLTDTVAAVSAGIIDTVPMLDLAYV 189 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D N V+T SG VEVQG+AE A F ++ A+L+LA A L ++Q++ + Sbjct: 190 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNQLDALLDLALLGTAQLAQIQRETL 247 >gi|294791355|ref|ZP_06756512.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304] gi|294457826|gb|EFG26180.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304] Length = 259 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 111/242 (45%), Positives = 157/242 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R +++TR ++ EGS L++ G T +L TAT + VP W +++ GW+T Sbjct: 17 IRADGRAVDQLRPVTITRGWTQAPEGSVLIECGQTRVLCTATFSQGVPRWRKDSGLGWVT 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T +R RE+V G+ GGR+ EI R+IGR LR +VDL ALG I IDCDV+Q Sbjct: 77 AEYAMIPRATADRTDRESVRGKIGGRTHEISRLIGRVLRGIVDLGALGENMIQIDCDVLQ 136 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + +VL V+A+S G++ G P++DL Y Sbjct: 137 ADGGTRTASITGAYVALADAVSWAKKNKKIKAAKRVLLDQVSAVSVGIINGTPMLDLPYT 196 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D N MT SG +E+QG+AE FS+D +L+LA+ L +LQK + Sbjct: 197 EDSQAMTDMNVAMTASGKFIEIQGTAEHRPFSRDELNTLLDLAQKGNTQLQELQKQALKK 256 Query: 241 EV 242 E+ Sbjct: 257 EI 258 >gi|8102038|gb|AAF72714.1|AF263927_2 ribonuclease PH [Carnobacterium sp. St2] Length = 364 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 113/236 (47%), Positives = 156/236 (66%), Gaps = 5/236 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +++R +++ K+ EGS LV FGDT ++ AT+E KVP ++R GW+ Sbjct: 1 MRTNTRKNDELRLVTIETNYLKHPEGSVLVSFGDTKVICNATVEPKVPPFMRGQGKGWVH 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+I R+LRSV+DL LG R I +DCDVIQ Sbjct: 61 AEYAMLPRATNTRTIREAAKGKLTGRTMEIQRLIARSLRSVIDLEKLGERAITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLC-GYPIVDLD 178 ADGGTRTA+ITGA+VAL +Q + D QL++ +K ++AA+S G+ G ++DLD Sbjct: 121 ADGGTRTASITGAFVALKMAIQTLLDSG---QLTEDPVKENIAAVSVGITKQGEAVLDLD 177 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 Y EDS+ VD N MT +G E+QG+ E ATFS D ML L K + +L ++Q Sbjct: 178 YLEDSSAAVDMNLFMTANGEFFELQGTGEEATFSNDQLMEMLELGKKGLNELFQIQ 233 >gi|18311236|ref|NP_563170.1| ribonuclease PH [Clostridium perfringens str. 13] gi|168205082|ref|ZP_02631087.1| ribonuclease PH [Clostridium perfringens E str. JGS1987] gi|168211260|ref|ZP_02636885.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626] gi|168216782|ref|ZP_02642407.1| ribonuclease PH [Clostridium perfringens NCTC 8239] gi|169347042|ref|ZP_02865984.1| ribonuclease PH [Clostridium perfringens C str. JGS1495] gi|182625546|ref|ZP_02953317.1| ribonuclease PH [Clostridium perfringens D str. JGS1721] gi|21759399|sp|Q8XI67|RNPH_CLOPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|18145919|dbj|BAB81960.1| ribonuclease PH [Clostridium perfringens str. 13] gi|169296725|gb|EDS78854.1| ribonuclease PH [Clostridium perfringens C str. JGS1495] gi|170663269|gb|EDT15952.1| ribonuclease PH [Clostridium perfringens E str. JGS1987] gi|170710734|gb|EDT22916.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626] gi|177909234|gb|EDT71699.1| ribonuclease PH [Clostridium perfringens D str. JGS1721] gi|182381123|gb|EDT78602.1| ribonuclease PH [Clostridium perfringens NCTC 8239] Length = 248 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 114/243 (46%), Positives = 162/243 (66%), Gaps = 6/243 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R +R+ + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q Sbjct: 61 AEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRT +ITG++VAL D + H + N + ++ V+A+S G++ I+DL Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYP----IRHFVSAVSVGIVGEEKILDLC 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y ED VD N VMT+ G +E+QG+ E FS+ +LNLA+ +I+ QKD + Sbjct: 177 YEEDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDAL 236 Query: 239 SNE 241 + Sbjct: 237 KTD 239 >gi|225075090|ref|ZP_03718289.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens NRL30031/H210] gi|224953574|gb|EEG34783.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens NRL30031/H210] Length = 277 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/232 (49%), Positives = 167/232 (71%), Gaps = 2/232 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 +GR + +R I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEY Sbjct: 42 TGRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEY 101 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 102 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 161 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 162 GTRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDS 219 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ Q+ Sbjct: 220 GCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQ 271 >gi|123440458|ref|YP_001004452.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166228324|sp|A1JHW7|RNPH_YERE8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|122087419|emb|CAL10200.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 238 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + S K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I + + QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETIFQAQKAAL 236 >gi|315606171|ref|ZP_07881199.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312129|gb|EFU60218.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 255 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 112/235 (47%), Positives = 155/235 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R +SLTR S EGS LV+FG+T +L A+ E VP W R++ GW+T Sbjct: 6 LRADGRTPSQLRPVSLTRGWSGTGEGSVLVEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+QEI R+IGR+LR +VD+SALG I++DCDV++ Sbjct: 66 AEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + ++ ++VL V+A+S G++ G + DL Y Sbjct: 126 ADGGTRTASVTGAYVALADAIAWAKERGILTPSARVLTDSVSAVSVGIIDGTAMADLPYV 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED D N V T G +EVQG+AE A FS++ +L+LA A L + QK Sbjct: 186 EDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFSREELSELLDLATAGNAQLARAQK 240 >gi|222528843|ref|YP_002572725.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725] gi|254808576|sp|B9MQJ8|RNPH_ANATD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|222455690|gb|ACM59952.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725] Length = 258 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPVTDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEVLGQ 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|312794043|ref|YP_004026966.1| ribonuclease ph [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181183|gb|ADQ41353.1| ribonuclease PH [Caldicellulosiruptor kristjanssonii 177R1B] Length = 258 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEVLGE 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|307329928|ref|ZP_07609081.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113] gi|306884419|gb|EFN15452.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113] Length = 243 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 157/241 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYAMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIGWARGKKLIKATRQPLTGTVSAVSVGIVGGIPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D + D N V T G VEVQG+AE F+++ +L+LA L +Q+ ++ E Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCETLAGIQRAALALE 242 Query: 242 V 242 + Sbjct: 243 M 243 >gi|237736793|ref|ZP_04567274.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817] gi|229420655|gb|EEO35702.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817] Length = 255 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 108/238 (45%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +++R + T+ + YAEGS L++ G+T ++ TAT+ +KVP +++N GW+T Sbjct: 18 LREDGRDVDELRVLKATKDFNLYAEGSVLMECGNTKVICTATVSDKVPPFLKNQGKGWLT 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+TG R +RE+ G+ GR+ EIQR+IGRALR+ VDL LG R I IDCDVIQ Sbjct: 78 AEYSMIPRATGERNQRESAKGKLTGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQ 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + + +VAAIS G++ G P++DL Y Sbjct: 138 ADGGTRTTSITGGYIALALAMKKL--VAEGVLAENPIISNVAAISVGIVNGTPVLDLKYT 195 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N VM G VEVQG+ E AT+++ ML+LA+ + ++++LQ +I Sbjct: 196 EDSAAEVDMNVVMNGEGKFVEVQGTGEEATYTRKELNEMLDLAEKGLKEIMELQNRII 253 >gi|114566005|ref|YP_753159.1| tRNA nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318883|sp|Q0AZR6|RNPH_SYNWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|114336940|gb|ABI67788.1| RNAse PH [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 239 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 113/237 (47%), Positives = 158/237 (66%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R +QMR + + KY +GS L++ GDT ++ +A +EEKVP ++R GW+TA Sbjct: 3 RPQNRGNDQMRTVRIIPGFQKYPDGSVLIEAGDTRVMCSAMMEEKVPPFLRGKGSGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R +REA G+ GR+ EIQR+IGR+LR+VVD+ A+G R + IDCDV+QA Sbjct: 63 EYSLLPSSTETRTQREASKGKISGRTSEIQRLIGRSLRAVVDMPAMGERTLWIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG++VAL+ + ++ + +K VAAIS G++ G PI+DL+Y E Sbjct: 123 DGGTRTAAITGSFVALYLAFKKFKEQGIIETIP--VKDFVAAISVGIIDGTPILDLEYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS DVD N VMT +G +E+QG+AE FS+ +L LA I +LI LQK ++ Sbjct: 181 DSQADVDMNVVMTGNGDFIEIQGTAEGTVFSRAELDQLLELAGKGIQELIALQKTIL 237 >gi|257126136|ref|YP_003164250.1| ribonuclease PH [Leptotrichia buccalis C-1013-b] gi|257050075|gb|ACV39259.1| ribonuclease PH [Leptotrichia buccalis C-1013-b] Length = 231 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 114/233 (48%), Positives = 159/233 (68%), Gaps = 2/233 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ ++MRE+ +T+ + EGS L++FG+T ++ AT+EEK+P W+R T GWIT Sbjct: 1 MRNNNRKNDEMREVKVTKNYIIHPEGSVLIEFGNTKVICNATVEEKIPRWLRGTGSGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T RV+RE+ G+ GR+ EIQR+IGRALR+ +DL LG R I+IDCDVIQ Sbjct: 61 AEYSMLPRATNTRVQRESTKGKLSGRTMEIQRLIGRALRATIDLEKLGERTIMIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA++AL ++ + D ++ +K VAAIS G + ++DL+Y Sbjct: 121 ADGGTRTASITGAYLALELAIEKLIDERKLKEMP--IKAKVAAISVGKVRNELLLDLEYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS DVD N VM D G +E+QG+ E ATF+Q + L+K+ L KL Sbjct: 179 EDSRADVDMNIVMNDKGEFIELQGTGEEATFTQTELLKFIELSKNAFDKLFKL 231 >gi|15677352|ref|NP_274507.1| ribonuclease PH [Neisseria meningitidis MC58] gi|21759417|sp|Q9JYN5|RNPH_NEIMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|7226741|gb|AAF41855.1| ribonuclease PH [Neisseria meningitidis MC58] gi|316986046|gb|EFV64983.1| ribonuclease PH [Neisseria meningitidis H44/76] gi|325140644|gb|EGC63162.1| ribonuclease PH [Neisseria meningitidis CU385] gi|325199896|gb|ADY95351.1| ribonuclease PH [Neisseria meningitidis H44/76] Length = 242 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 170/239 (71%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T Sbjct: 5 IRIS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST +R+ REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ Sbjct: 64 AEYGMLPASTASRMLREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240 >gi|239982007|ref|ZP_04704531.1| ribonuclease PH [Streptomyces albus J1074] gi|291453857|ref|ZP_06593247.1| ribonuclease PH [Streptomyces albus J1074] gi|291356806|gb|EFE83708.1| ribonuclease PH [Streptomyces albus J1074] Length = 241 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 115/233 (49%), Positives = 151/233 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRTPAQLRPLTIERSWSKHAEGSVLVAFGDTKVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G++ P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAISWAQGKKIIKPGRKPLTGSVAAVSVGIVGSTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + D N V T G VEVQG+AE A F + A+L+L ADL K Q Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRTELDALLDLGATGCADLTKGQ 235 >gi|325290671|ref|YP_004266852.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271] gi|324966072|gb|ADY56851.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271] Length = 246 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 111/237 (46%), Positives = 161/237 (67%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R++ R ++R + +TRR ++ EGS L++ G T +L TA++E++VP +++ GWITA Sbjct: 3 RIAERNNQELRPVRITRRYTEIPEGSVLIEIGKTMVLCTASIEDRVPPFLKGAGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+TG R +RE+ G+ GR+ EIQR+IGRALRSVVDLS LG + I +DCDV+QA Sbjct: 63 EYSMLPRATGVRNQRESSKGKLSGRTMEIQRLIGRALRSVVDLSKLGEKTIWLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VALHD + + + + +AA+S G + G ++DL Y E Sbjct: 123 DGGTRTAAITGAYVALHDAVSFL--LGAGLLKTNPITDSLAAVSVGKVRGEYLLDLAYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS +VD N VMT SG ++EVQG+AE+ F + +L+LA++ I L+ Q+ + Sbjct: 181 DSKAEVDMNVVMTGSGKLIEVQGTAEKEPFDRKELDELLDLAENGIRTLMGYQRQAL 237 >gi|168213163|ref|ZP_02638788.1| ribonuclease PH [Clostridium perfringens CPE str. F4969] gi|170715201|gb|EDT27383.1| ribonuclease PH [Clostridium perfringens CPE str. F4969] Length = 248 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 114/243 (46%), Positives = 162/243 (66%), Gaps = 6/243 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R +R+ + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q Sbjct: 61 AEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRT +ITG++VAL D + H + N + ++ V+A+S G++ I+DL Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYP----IRHFVSAVSVGIVGEEKILDLC 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y ED VD N VMT+ G +E+QG+ E FS+ +LNLA+ +I+ QKD + Sbjct: 177 YEEDHIAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDAL 236 Query: 239 SNE 241 + Sbjct: 237 KTD 239 >gi|153956061|ref|YP_001396826.1| ribonuclease PH [Clostridium kluyveri DSM 555] gi|219856397|ref|YP_002473519.1| hypothetical protein CKR_3054 [Clostridium kluyveri NBRC 12016] gi|189043757|sp|A5N2V9|RNPH_CLOK5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808584|sp|B9DWL2|RNPH_CLOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|146348919|gb|EDK35455.1| RpH [Clostridium kluyveri DSM 555] gi|219570121|dbj|BAH08105.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 248 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 115/236 (48%), Positives = 162/236 (68%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ NQ+R + +TR +KYAEGS L++ GDT ++ TA++E+KVP +++ GWIT Sbjct: 1 MRVDGRKCNQIRPVKITRNYTKYAEGSVLIENGDTKVICTASIEDKVPPFLKGRGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY M+PR+T R R+ GR GR+ EIQR+IGRALRSVVDL A+G + I +DCDVIQ Sbjct: 61 CEYNMIPRATQVRKARDINRGRIDGRTMEIQRIIGRALRSVVDLRAIGEKTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA+VAL D + + N F + + + V+A+S G++ ++DL Y Sbjct: 121 ADGGTRTASISGAFVALVDAVNKLHK-QNPFTIYPI-RDFVSAVSVGIVNDTRMLDLCYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD N VMTDSG VE+QG+ E+ F+++ +L LA+ I +I QKD Sbjct: 179 EDSRAKVDMNVVMTDSGEFVEIQGTGEQNPFTREDLKELLALAEKGIKSMISAQKD 234 >gi|323705986|ref|ZP_08117556.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11] gi|323534600|gb|EGB24381.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11] Length = 259 Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 169/240 (70%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I +TR ++YAEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RVDGRDSRSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+T R +RE+ G+Q GR+ EIQR+IGRALR+VVDL ALG + I IDCDVIQA Sbjct: 63 EYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTA+ITG++VAL D + +++ K +S++ +K VAA+S G++ ++DL Y Sbjct: 123 DGGTRTASITGSFVALVDAMNKLKE---KGAISKLPIKSFVAAVSVGIVGNEKLLDLCYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMTD G +E+QG+ E FS+ F +L LA++ + +I++QK+ + + Sbjct: 180 EDSNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKSDFSELLELAEEGLNKIIQVQKESLGD 239 >gi|269836459|ref|YP_003318687.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745] gi|269785722|gb|ACZ37865.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745] Length = 246 Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 118/240 (49%), Positives = 161/240 (67%), Gaps = 6/240 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++ + YAEGS L+ G+TH+L TAT+EE+VP ++ GW+TA Sbjct: 9 RPGGRANDELRPVTIQPGFAPYAEGSALITMGNTHVLCTATIEERVPPFLVGKGQGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRS+ R+ RE GGR+QEIQR+IGR+LR+V L LG R I+IDCDV++A Sbjct: 69 EYGMLPRSSPQRIPRE--RSLTGGRTQEIQRLIGRSLRAVTKLDLLGERTILIDCDVLRA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITG +VAL L+ + QL V L G+VAA+S G++ +DL+Y Sbjct: 127 DGGTRTAAITGGYVALRLALERL---VRTGQLKAVPLTGYVAAVSVGVVWDEVRLDLEYE 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N VMTD G IVEVQG+AE F + AML+LA+ + L++ QK +S+ Sbjct: 184 EDSQAEVDCNVVMTDRGDIVEVQGTAEGKPFPRARLDAMLDLAERGVRQLVEYQKAALSS 243 >gi|332159681|ref|YP_004296258.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318603777|emb|CBY25275.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica Y11] gi|325663911|gb|ADZ40555.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 238 Score = 224 bits (572), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 114/212 (53%), Positives = 150/212 (70%), Gaps = 2/212 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + S K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212 EDS + D N VM + G ++EVQG+AE FS Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFS 210 >gi|170782454|ref|YP_001710787.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus] gi|169157023|emb|CAQ02196.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus] Length = 245 Score = 224 bits (572), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 112/212 (52%), Positives = 146/212 (68%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+REI++ R S+ AEGS L+ FG T +L TA+ +VP W + GW+TA Sbjct: 7 RHDGRTADQLREITIERDWSEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG ++IDCDV+QA Sbjct: 67 EYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTVVIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L+ + Q + LK VAA+S G++ G P++DL Y E Sbjct: 127 DGGTRTAAITGAYVALADALEWGRERKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 D + D N VMT SG VEVQG+AE A F + Sbjct: 187 DVRAETDMNVVMTGSGSFVEVQGTAEGAPFDR 218 >gi|332308581|ref|YP_004436432.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175910|gb|AEE25164.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5] Length = 237 Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R +++TR + +AEGS L++FG+T +L A++ E VP +++ GW+T Sbjct: 1 MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL LG I++DCDVIQ Sbjct: 61 AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M S + +K +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTWMR--SKGIIKTNPMKHMIAAISVGIYKGNAIADLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMTD+G ++EVQG+AE FS + ML LAK I +L QK ++ Sbjct: 179 EDSDAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQKAALN 237 >gi|295836838|ref|ZP_06823771.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74] gi|197697479|gb|EDY44412.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74] Length = 241 Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 114/237 (48%), Positives = 154/237 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + L+ V+A+S G++ P +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIIDSVPYLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V T G VEVQG+AE A F + A+L+LA DL LQ++ + Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCTDLAALQREAL 239 >gi|297625967|ref|YP_003687730.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921732|emb|CBL56290.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 253 Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 115/238 (48%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +S+TR +AEGSCL++ G T +L A++ E VP W R + GW+T+ Sbjct: 10 RSDGRSLDQLRPVSITRHWLDHAEGSCLIEAGRTRVLVAASVTEGVPRWRRGSGLGWVTS 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EI R+IGR+LR+V+D ALG I++D DV+QA Sbjct: 70 EYEMLPRATNTRNDRESRRGKISGRTHEISRLIGRSLRAVIDYKALGENTIVVDADVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VALHD ++ + + + + L G V+AIS G++ G P++DL Y E Sbjct: 130 DGGTRTASITGAYVALHDAVEWLRERGS--LAGEPLTGSVSAISVGIVKGVPMLDLAYDE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DST DVD N V T +G VEVQG+AE ATF + +L+LA +L LQ+ VI+ Sbjct: 188 DSTADVDMNIVATGTGDFVEVQGTAEGATFDRKLLGRLLDLADKGNRELTDLQQRVIA 245 >gi|238789552|ref|ZP_04633336.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641] gi|238722305|gb|EEQ13961.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641] Length = 238 Score = 224 bits (571), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + S K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + A+L+LA+ I + + QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQKAAL 236 >gi|312128053|ref|YP_003992927.1| ribonuclease ph [Caldicellulosiruptor hydrothermalis 108] gi|311778072|gb|ADQ07558.1| ribonuclease PH [Caldicellulosiruptor hydrothermalis 108] Length = 258 Score = 224 bits (571), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS D F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKRGIQRIIEVQKEVLGE 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|282858123|ref|ZP_06267318.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455] gi|282584045|gb|EFB89418.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455] Length = 251 Score = 224 bits (571), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 117/236 (49%), Positives = 160/236 (67%), Gaps = 2/236 (0%) Query: 3 LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62 L+ + + +R +++ R + YAEGSC++ G T +L TAT+E+KVP ++R GW+TAE Sbjct: 9 LTRERADALRPVTMERNWNVYAEGSCVISCGRTRVLCTATVEDKVPPFLRGQGKGWVTAE 68 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122 Y +LPRST RV R++ GR GRSQEIQR+IGR+LR+ VDL ALG R + +DCDVIQAD Sbjct: 69 YSLLPRSTMTRVPRDSTKGRINGRSQEIQRLIGRSLRAAVDLDALGERCVTLDCDVIQAD 128 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 GGTRTA+ITGA+VAL D L+ + +L LK VAA+S G + G ++DL Y ED Sbjct: 129 GGTRTASITGAYVALVDALRWLRGQGAFEKLP--LKSPVAAVSVGKVRGQLLLDLCYEED 186 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ST +VD N VM G +EVQG+ E FS++ ML+LA I +L+ LQ+ V+ Sbjct: 187 STAEVDFNVVMNGQGDFIEVQGTGEGGVFSREEMAGMLDLASAGIHELMALQRHVL 242 >gi|325963801|ref|YP_004241707.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3] gi|323469888|gb|ADX73573.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3] Length = 252 Score = 224 bits (570), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 161/240 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R IS+TR S AEGS L++FG+T +L TA+L VP W++ GW+T Sbjct: 11 VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q Sbjct: 71 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D ++ D + +Q + +AA+S G++ G P++DL Y Sbjct: 131 ADGGTRTAAITGAYVALADSIRFARDNQLIGKNAQPIIDTIAAVSVGIIDGVPMLDLPYV 190 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N V+T SG VEVQG+AE A F + +L+LA + L +Q++ +++ Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRAELDQLLDLALLGTSQLAAIQRETLAD 250 >gi|331695372|ref|YP_004331611.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190] gi|326950061|gb|AEA23758.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190] Length = 251 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 115/238 (48%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR K+ GS LV+FGDT +L A++ + VP W + + GW+TA Sbjct: 3 RADGRADDELRPVRITRGFQKHPAGSVLVEFGDTKVLCAASVTDGVPRWRKGSGLGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I +DCDVIQA Sbjct: 63 EYAMLPSATNTRSDRESVRGRIGGRTHEISRLIGRSLRACIDLKALGENTIALDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + N+ + + VAA+S G++ G +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVTWLA-AHNRLADPKPISCQVAAVSVGVVDGRVRLDLPYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G ++EVQG+AE ATFS+ AML+ A IA L LQ + ++ Sbjct: 182 DSRAEVDTNVVATDTGTLIEVQGTAEGATFSRRTLDAMLDSALAGIATLATLQAEALA 239 >gi|269793131|ref|YP_003318035.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100766|gb|ACZ19753.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589] Length = 248 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 117/237 (49%), Positives = 159/237 (67%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R + + R ++YAEGS L+++G+TH+L TA++EEKVP ++R + GW++A Sbjct: 3 RIDGRSSGDLRPVRIERGCNRYAEGSALIRWGNTHVLCTASVEEKVPQFLRGSGRGWVSA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R +RE G+ R QEIQR+IGR+LR+ VDLS LG R I IDCDV+QA Sbjct: 63 EYAMLPRSTHQRTQREISRGKPNARGQEIQRLIGRSLRASVDLSLLGERTIWIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAIT ++VAL D + + SN S + VAA+S G++ G ++DL Y E Sbjct: 123 DGGTRTAAITASFVALVDACRWL--MSNGLVGSMPVVHQVAAVSAGIVAGEVMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS+ VD N VM + G VE+QG+ E A FS + F ML+LA I L LQ +V+ Sbjct: 181 DSSAQVDCNVVMAEDGRFVEIQGTGEDALFSMESFRDMLSLADVGIRRLHALQLEVL 237 >gi|257875805|ref|ZP_05655458.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20] gi|257809971|gb|EEV38791.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20] Length = 210 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 109/212 (51%), Positives = 149/212 (70%), Gaps = 3/212 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E +R + + V K+ EGS ++ FGDT ++ +AT+EE+VP ++R+T GW+T Sbjct: 1 MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATIEERVPPFLRDTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDV+Q Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VAL + + +K +K H+AAIS G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211 EDS+ VD N VMT+SG VE+QG+ E ATF Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATF 210 >gi|23099561|ref|NP_693027.1| ribonuclease PH [Oceanobacillus iheyensis HTE831] gi|61216060|sp|Q8EPJ5|RNPH_OCEIH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|22777791|dbj|BAC14062.1| ribonuclease PH (tRNA nucleotidyltransferase) [Oceanobacillus iheyensis HTE831] Length = 244 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R+ NQ+R I++T + EGS L++ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRNDQREVNQLRNINITTNYISHPEGSVLIEMGNTKVICNASIEDRVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL +G R + IDCDVIQ Sbjct: 61 AEYAMLPRATAQRNIRESSKGKVSGRTMEIQRLIGRALRSVVDLDQIGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + K ++ ++AAIS G+L G I+DL+Y Sbjct: 121 ADGGTRTASITGAFVAMSLAFAKLVEA--KTLKKTPIQDYLAAISVGVLTNGTEILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT G VE+QG+ E ATF+ + ML L ++ I L+K+QK++++ Sbjct: 179 EEDSEAAVDMNIVMTGEGEFVEIQGTGEEATFTPNQLQNMLKLGEEGIQQLVKIQKELLA 238 Query: 240 NEV 242 +++ Sbjct: 239 DKL 241 >gi|19705156|ref|NP_602651.1| ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713093|gb|AAL93950.1| Ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 434 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/241 (46%), Positives = 158/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEENPLISNVAAISVGKIDSNLMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N +M +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+ Sbjct: 180 EDSAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|228923234|ref|ZP_04086524.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836440|gb|EEM81791.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 245 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/241 (46%), Positives = 162/241 (67%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+V+ Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEVLG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|172041146|ref|YP_001800860.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109] gi|171852450|emb|CAQ05426.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109] Length = 257 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 112/240 (46%), Positives = 161/240 (67%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R+I +TRR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 12 RADGRSVDQLRDIRITRRFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 71 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ RE++ G+ GR+ EI R++GRALR+ VDL+ LG I IDCDV+QA Sbjct: 72 EYAMLPSATHERMPRESMRGKVKGRTHEISRLVGRALRAAVDLTELGENTIAIDCDVLQA 131 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L ++++ + L+ VAA+S G++ G +DL Y E Sbjct: 132 DGGTRTAAITGAYVALADALAYLQE--QGVVPGKPLRAPVAAVSVGIIDGVACLDLPYEE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N VMT +G VE+QG+ E A F + ML+LA+ + LI+LQ+ ++ + Sbjct: 190 DSRADVDMNVVMTKAGRFVEIQGTGEAAEFDRAELNTMLDLAEGGLHQLIELQERALNTD 249 >gi|119503532|ref|ZP_01625615.1| ribonuclease PH [marine gamma proteobacterium HTCC2080] gi|119460594|gb|EAW41686.1| ribonuclease PH [marine gamma proteobacterium HTCC2080] Length = 243 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +++R I+ R + +AEGS LV FG T +L TA+L VP ++R GW+TA Sbjct: 7 RPSGRALDELRAITFERNFTCHAEGSVLVSFGQTRVLCTASLTPGVPGFLRGKGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+Q GR+ EIQR+IGR+LR+ +DL ALG + +DCDVIQA Sbjct: 67 EYGMLPRSTGSRMNREASRGKQSGRTVEIQRLIGRSLRAAIDLKALGENTLTLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+I+GA VA+ D L ++ Q S LK + A+S G+ G ++DLDY E Sbjct: 127 DGGTRTASISGACVAVVDALNTLQR-KQSLQ-SDPLKFLIGAVSVGVWKGQAVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DST D D N V+ + G ++EVQG+AE A F + +ML+LA +I Q++ +S Sbjct: 185 DSTADTDMNVVVAEGGGLIEVQGTAEGAAFERAELNSMLDLAVAGGEIIISKQREALS 242 >gi|239931006|ref|ZP_04687959.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672] gi|291439379|ref|ZP_06578769.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672] gi|291342274|gb|EFE69230.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672] Length = 245 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 155/241 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R I++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R++GR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATHTRGDRESVKGRIGGRTHEISRLVGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG++VAL D + + + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGSYVALADAISWAQGKKLIKAGRRPLTGSVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D D N V T G VEVQG+AE F++ A+L+LA A L Q+ + Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARAELDALLDLAVAGCARLADAQRAALGTV 242 Query: 242 V 242 V Sbjct: 243 V 243 >gi|238750796|ref|ZP_04612294.1| Ribonuclease PH [Yersinia rohdei ATCC 43380] gi|238710940|gb|EEQ03160.1| Ribonuclease PH [Yersinia rohdei ATCC 43380] Length = 238 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/212 (53%), Positives = 150/212 (70%), Gaps = 2/212 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + S K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212 EDS + D N VM + G ++EVQG+AE FS Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFS 210 >gi|238063132|ref|ZP_04607841.1| ribonuclease PH [Micromonospora sp. ATCC 39149] gi|237884943|gb|EEP73771.1| ribonuclease PH [Micromonospora sp. ATCC 39149] Length = 241 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 161/241 (66%), Gaps = 5/241 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R ++L+R S + EGS LV+FG T +L TA++ E VP W + + GW+TA Sbjct: 3 RPDGRLPDQLRPVTLSRGWSTHPEGSVLVEFGGTRVLCTASVTEGVPRWRKGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHM---EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 DGGTRTAA+TGA+VALHD + + + + K + +V+ VAA+S G++ G +DL Sbjct: 123 DGGTRTAAVTGAYVALHDAVSWLAARKALAGKPE--KVMHRSVAAVSVGVIAGEARLDLC 180 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y ED +VD N V T SG VEVQG+ E F++D A+L+LA A+L + Q+ + Sbjct: 181 YEEDVAAEVDMNVVCTGSGEFVEVQGTGESGVFARDQLDALLDLAVAGCAELAEAQRKAL 240 Query: 239 S 239 S Sbjct: 241 S 241 >gi|302534682|ref|ZP_07287024.1| ribonuclease PH [Streptomyces sp. C] gi|302443577|gb|EFL15393.1| ribonuclease PH [Streptomyces sp. C] Length = 244 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 114/233 (48%), Positives = 151/233 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA+ E VP W + + GW+T+ Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIAWGQGKKLIKAGRKPLTGTVAAVSVGIVDGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + D N V T G VEVQG+AE F + A+L+LA ADL LQ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADLEALQ 235 >gi|328882703|emb|CCA55942.1| Ribonuclease PH [Streptomyces venezuelae ATCC 10712] Length = 243 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/237 (46%), Positives = 153/237 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+T Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G V A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQTKKLVKAGRKPLTGTVGAVSVGIVDGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D D N V T G VEVQG+AE F + A+L+LA A+L ++Q+ + Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLASGGCAELAEIQRKAL 239 >gi|312877642|ref|ZP_07737599.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A] gi|311795589|gb|EFR11961.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A] Length = 258 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEVLGE 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|219670395|ref|YP_002460830.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2] gi|219540655|gb|ACL22394.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2] Length = 247 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 153/234 (65%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++R + LTR + EGS L++ G T ++ TAT+EEKVP++ + T GW+TA Sbjct: 3 RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL LG R I +DCDVIQA Sbjct: 63 EYSMLPRATQTRNPRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H+ + + +AA+S G + G ++DL Y E Sbjct: 123 DGGTRTASITGAYVALVDAVNHL--LAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N VMT G VE+QG+AE F ++ L LA+ I +L+ +QK Sbjct: 181 DSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQK 234 >gi|255657266|ref|ZP_05402675.1| ribonuclease PH [Clostridium difficile QCD-23m63] gi|296451893|ref|ZP_06893610.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08] gi|296879712|ref|ZP_06903687.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07] gi|296259275|gb|EFH06153.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08] gi|296429301|gb|EFH15173.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07] Length = 449 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 112/233 (48%), Positives = 157/233 (67%), Gaps = 2/233 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VA+ + + + ++ + V+AIS G++ G ++DL Y EDS Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTVKEMP--ITNFVSAISVGIVNGTHMLDLCYEEDSKA 184 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 VD N +MTD VEVQG+ E FS+ +L L + +LI+LQK+ + Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRTDLNLLLELGEKGNKELIRLQKEAL 237 >gi|109900580|ref|YP_663835.1| ribonuclease PH [Pseudoalteromonas atlantica T6c] gi|123063997|sp|Q15MV7|RNPH_PSEA6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|109702861|gb|ABG42781.1| RNAse PH [Pseudoalteromonas atlantica T6c] Length = 237 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R +++TR + +AEGS L++FG+T +L A++ E VP +++ GW+ Sbjct: 1 MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL LG I++DCDVIQ Sbjct: 61 AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M S + +K +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTWMR--SKGIIKTNPMKHMIAAISVGIYKGNAIADLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMTD+G ++EVQG+AE FS + ML LAK I +L QK ++ Sbjct: 179 EDSEAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQKAALN 237 >gi|326385028|ref|ZP_08206700.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395] gi|326196242|gb|EGD53444.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395] Length = 252 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 161/240 (67%), Gaps = 1/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R I TR + + GS LV+FG+T ++ TA++ E VP W R + GW+TA Sbjct: 4 RADGRADDELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASVTEGVPSWRRGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R KRE+V G+ GGR+ EI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYSMLPAATHERSKRESVRGKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ K Q L +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-GAGGKLADPQPLSCIIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V TD+G +VEVQG+ E ATF++ ML++A I +++ Q++V++ Sbjct: 183 DSRAEVDMNVVATDAGTLVEVQGTGEGATFARGTLDKMLDVACAGIENIVAAQREVLAQP 242 >gi|293605635|ref|ZP_06688015.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553] gi|292816015|gb|EFF75116.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553] Length = 244 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 121/235 (51%), Positives = 163/235 (69%), Gaps = 4/235 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +++R SL R ++YAEGS LVK GDTH+L TA++ EKVP +++ GW+TA Sbjct: 9 RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGDTHVLCTASVLEKVPPFLKGKGEGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA Sbjct: 69 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTR A+ITGAWVA D + + + L+ ++ VAA+S G++ G ++DLDY Sbjct: 129 DGGTRCASITGAWVAAADAVALL---MKRGDLAVNPIRDAVAAVSVGLVQGRSVLDLDYQ 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D N +MT SG VEVQG+ E ATF++ ML LA+ IA L++ Q+ Sbjct: 186 EDSACDADVNVIMTGSGAFVEVQGTGEGATFTRAELDTMLVLAEGGIASLVRAQR 240 >gi|313638210|gb|EFS03458.1| ribonuclease PH [Listeria seeligeri FSL S4-171] Length = 248 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 117/243 (48%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + + D F V K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKL-DAEVPFTKFPV-KDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K IA+LI++QK+ + Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLG 238 Query: 240 NEV 242 EV Sbjct: 239 EEV 241 >gi|34763588|ref|ZP_00144521.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886731|gb|EAA23871.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 434 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ ++ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRKFDEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + D + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I I+LQ +I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|296129173|ref|YP_003636423.1| ribonuclease PH [Cellulomonas flavigena DSM 20109] gi|296020988|gb|ADG74224.1| ribonuclease PH [Cellulomonas flavigena DSM 20109] Length = 257 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/223 (49%), Positives = 150/223 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +++R +++TRR EGS LV+FG T +L A+ E VP W + + GW+T Sbjct: 1 MRKDGRRADELRPVTITRRFLDAGEGSVLVEFGGTKVLCVASFTEGVPRWRKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R++GR+LR+VVD++ALG I++DCDV+Q Sbjct: 61 AEYAMLPRATNSRSDRESVRGKVGGRTHEISRLVGRSLRAVVDVAALGENTIVLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + VL+ VAAIS G++ G P++DL Y Sbjct: 121 ADGGTRTAAITGAYVALADAVAWATTKRLVKPGRTVLRDSVAAISVGVVDGVPVLDLPYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 ED + D N V T +G VEVQG+AE A F + A+L+LA Sbjct: 181 EDVRAETDMNVVTTGAGAFVEVQGTAEHAPFDRAELDALLDLA 223 >gi|254385745|ref|ZP_05001066.1| ribonuclease PH [Streptomyces sp. Mg1] gi|194344611|gb|EDX25577.1| ribonuclease PH [Streptomyces sp. Mg1] Length = 244 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 114/233 (48%), Positives = 151/233 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA+ E VP W + + GW+T+ Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWGQRKKLIKAGRKPLTGTVAAVSVGIVDGEPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + D N V T G VEVQG+AE F + A+L+LA ADL LQ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADLQALQ 235 >gi|289434487|ref|YP_003464359.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170731|emb|CBH27271.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 248 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 117/245 (47%), Positives = 163/245 (66%), Gaps = 7/245 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVENKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDL 177 ADGGTRTA+ITGA++A+ + + E KF + +L AA S G+L G ++DL Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDLL----AATSVGVLEEGGTVLDL 176 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +Y EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K IA+LI++QK+ Sbjct: 177 NYIEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKET 236 Query: 238 ISNEV 242 + EV Sbjct: 237 LGEEV 241 >gi|255528421|ref|ZP_05395219.1| ribonuclease PH [Clostridium carboxidivorans P7] gi|296184854|ref|ZP_06853265.1| ribonuclease PH [Clostridium carboxidivorans P7] gi|255507888|gb|EET84330.1| ribonuclease PH [Clostridium carboxidivorans P7] gi|296050636|gb|EFG90059.1| ribonuclease PH [Clostridium carboxidivorans P7] Length = 249 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 112/236 (47%), Positives = 161/236 (68%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ +Q+R +TR +KYAEGS L++ GDT ++ TA++E+KVP +++ GWIT Sbjct: 1 MRIDGRKNDQIRHTKITRNYTKYAEGSVLIEAGDTKVICTASIEDKVPPFLKGKGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY M+PRST R R+ G+ GR+ EIQR+IGRALRSVVDL ++G + I IDCDVIQ Sbjct: 61 CEYNMIPRSTKVRKVRDINRGKIDGRTMEIQRIIGRALRSVVDLKSIGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA++AL D + + F + V + V AIS G++ ++DL Y Sbjct: 121 ADGGTRTASISGAFIALVDAVNKLHK-QTPFNVYPV-RDFVGAISVGIVGNVKMLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS +VD N VMTDSG +E+QG+ E FS+ +L+LA+ I +I+++K+ Sbjct: 179 EDSKANVDMNVVMTDSGEFIEIQGTGEEKPFSKQDLSELLSLAEQGINHVIQIEKE 234 >gi|254303318|ref|ZP_04970676.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323510|gb|EDK88760.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 434 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ ++ R+I + + V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRKFDEERKIKIIKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEENPLISNVAAISVGKIDSNLMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N +M G +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+ Sbjct: 180 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|326201646|ref|ZP_08191517.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782] gi|325988246|gb|EGD49071.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782] Length = 240 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR Q+R + + R K+AEGS L++ GDT ++ TA++EE++P + +++ GWIT Sbjct: 2 LRHDGRSNTQLRPVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +R+ + GRS EIQR+IGR+LR++VDL LG R I +DCDVIQ Sbjct: 62 AEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL D + + N + G VAA S G++ G ++DL Y Sbjct: 122 ADGGTRTASITGGYVALADACRTL--VKNGLISKTPIIGIVAATSVGIVNGEELLDLCYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N +MTD G +E+Q + E+++FS+ +LNLA+ I +LIK Q +VI Sbjct: 180 EDSNAEVDMNVIMTDKGEFIELQATGEKSSFSKKQLDKLLNLAESGIHELIKAQNEVI 237 >gi|302545021|ref|ZP_07297363.1| tRNA nucleotidyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302462639|gb|EFL25732.1| tRNA nucleotidyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 241 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 111/234 (47%), Positives = 155/234 (66%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVNEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAITWAQGKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D + D N V T G VEVQG+AE F+++ ++L+LA +L Q+ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNSLLDLAVGGCVELAGNQR 236 >gi|89895968|ref|YP_519455.1| hypothetical protein DSY3222 [Desulfitobacterium hafniense Y51] gi|89335416|dbj|BAE85011.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 247 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 153/234 (65%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++R + LTR + EGS L++ G T ++ TAT+EEKVP++ + T GW+TA Sbjct: 3 RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL LG R I +DCDVIQA Sbjct: 63 EYSMLPRATQTRNHRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H+ + + +AA+S G + G ++DL Y E Sbjct: 123 DGGTRTASITGAYVALVDAVNHL--LAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N VMT G VE+QG+AE F ++ L LA+ I +L+ +QK Sbjct: 181 DSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQK 234 >gi|329936575|ref|ZP_08286311.1| ribonuclease [Streptomyces griseoaurantiacus M045] gi|329304090|gb|EGG47972.1| ribonuclease [Streptomyces griseoaurantiacus M045] Length = 244 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 115/229 (50%), Positives = 148/229 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +SL R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRAPEQLRPVSLARGWSKHAEGSVLVAFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRRPLTDTVSAVSVGIVGGAPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 D D D N V T G VEVQG+AE F + A+L+LA DL Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVAGCGDL 231 >gi|229098953|ref|ZP_04229888.1| Ribonuclease PH [Bacillus cereus Rock3-29] gi|228684451|gb|EEL38394.1| Ribonuclease PH [Bacillus cereus Rock3-29] Length = 258 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 14 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 191 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 251 Query: 240 N 240 + Sbjct: 252 D 252 >gi|29831713|ref|NP_826347.1| ribonuclease PH [Streptomyces avermitilis MA-4680] gi|61216038|sp|Q82D17|RNPH_STRAW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|29608829|dbj|BAC72882.1| putative ribonuclease PH [Streptomyces avermitilis MA-4680] Length = 244 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 152/234 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R I++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D D D N V T G VEVQG+AE F + A+L+LA +L +Q+ Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVSGCDELAVIQR 236 >gi|126700927|ref|YP_001089824.1| ribonuclease PH [Clostridium difficile 630] gi|115252364|emb|CAJ70205.1| Bifunctional enzyme, tRNA nucleotidyltransferase ; Nucleoside-triphosphatase [Clostridium difficile] Length = 449 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 161/240 (67%), Gaps = 5/240 (2%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VA+ + + + ++ + V+AIS G++ G ++DL Y EDS Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTIKEMP--ITNFVSAISVGIVNGIHMLDLCYEEDSKA 184 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV---ISNEV 242 VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ IS+E+ Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGEISDEI 244 >gi|300856830|ref|YP_003781814.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528] gi|300436945|gb|ADK16712.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528] Length = 248 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/236 (47%), Positives = 162/236 (68%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ +Q+R I +TR +KYAEGS L++ GDT ++ TA++E++VP +++ GWIT Sbjct: 1 MRIDGRKYDQIRPIKITRDYTKYAEGSVLIETGDTKVICTASIEDRVPPFLKGKGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R R+ G+ GR+ EIQR+IGRALRSVVDL A+G + I +DCDVIQ Sbjct: 61 CEYNMLPRATQVRKIRDITKGKIDGRTMEIQRIIGRALRSVVDLKAMGEKTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA+VAL D + + F + + + V+AIS G++ ++DL Y Sbjct: 121 ADGGTRTASISGAFVALVDAVNKLHK-RTPFTVYPI-RDFVSAISVGIVNNVRMLDLCYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD N VMTDSG VE+QG+ E++ F++D +L L + I ++I QK+ Sbjct: 179 EDSRAQVDMNIVMTDSGEFVEIQGTGEQSPFTRDDLQELLRLGEKGINNMIHAQKE 234 >gi|288817498|ref|YP_003431845.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6] gi|288786897|dbj|BAI68644.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6] gi|308751105|gb|ADO44588.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6] Length = 253 Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/235 (48%), Positives = 159/235 (67%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ N++R I + R ++ EGSCL++FG+T ++ T ++++ VP +++ GWIT Sbjct: 1 MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTVSVQDGVPPFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GR+ EIQRMIGRA+R+ +DL+ +G R IDCDVIQ Sbjct: 61 AEYSMLPRATITRNVRESVQGRISGRTHEIQRMIGRAMRTALDLTKIGERTFWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ D + + + S +K VA++S G + G ++DL+Y Sbjct: 121 ADGGTRTASITGAFVAIADAVIKLYN--EGILSSTPIKDFVASVSVGTVNGQILLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST VD N V T SG I E+Q E TFS++ F ML+LA I+ LI+LQ+ Sbjct: 179 EDSTASVDMNVVATGSGRISEIQALGEENTFSREEFDRMLSLALAGISQLIELQR 233 >gi|255308380|ref|ZP_05352551.1| ribonuclease PH [Clostridium difficile ATCC 43255] Length = 449 Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 161/240 (67%), Gaps = 5/240 (2%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VA+ + + + ++ + V+AIS G++ G ++DL Y EDS Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTIKEMP--ITNFVSAISVGIVNGIHMLDLCYEEDSKA 184 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV---ISNEV 242 VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ IS+E+ Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGEISDEI 244 >gi|295706788|ref|YP_003599863.1| ribonuclease PH [Bacillus megaterium DSM 319] gi|294804447|gb|ADF41513.1| ribonuclease PH [Bacillus megaterium DSM 319] Length = 248 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 116/241 (48%), Positives = 167/241 (69%), Gaps = 4/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL GR+ N++R +SL K+ EGS L+ GDT ++ TA+++++VP ++R GWIT Sbjct: 1 MRLDGREFNELRSVSLHTSYLKHPEGSVLISVGDTKVICTASIDDRVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL +G + I IDCDVIQ Sbjct: 61 AEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + NK L+++ ++ ++AA S G+ I+DL+Y Sbjct: 121 ADGGTRTASITGAFVAMVLAFGKLVE-ENK--LTEIPIRDYLAATSVGIHGENSILDLNY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST +VD N VMT SG VE+QG+ E +TFS++ +L+L + + LI+ QK+V+ Sbjct: 178 EEDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEVLD 237 Query: 240 N 240 + Sbjct: 238 H 238 >gi|294501440|ref|YP_003565140.1| ribonuclease PH [Bacillus megaterium QM B1551] gi|294351377|gb|ADE71706.1| ribonuclease PH [Bacillus megaterium QM B1551] Length = 248 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 116/241 (48%), Positives = 167/241 (69%), Gaps = 4/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL GR+ N++R +SL K+ EGS L+ GDT ++ TA+++++VP ++R GWIT Sbjct: 1 MRLDGREFNELRPVSLHTSYLKHPEGSVLISVGDTKVICTASIDDRVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL +G + I IDCDVIQ Sbjct: 61 AEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + NK L+++ ++ ++AA S G+ I+DL+Y Sbjct: 121 ADGGTRTASITGAFVAMVLAFGKLVE-ENK--LTEIPIRDYLAATSVGIHGENSILDLNY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST +VD N VMT SG VE+QG+ E +TFS++ +L+L + + LI+ QK+V+ Sbjct: 178 EEDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEVLD 237 Query: 240 N 240 + Sbjct: 238 H 238 >gi|254673252|emb|CBA08277.1| ribonuclease PH [Neisseria meningitidis alpha275] Length = 261 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/227 (49%), Positives = 161/227 (70%), Gaps = 2/227 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEY Sbjct: 7 TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGEL 231 >gi|229192693|ref|ZP_04319652.1| Ribonuclease PH [Bacillus cereus ATCC 10876] gi|228590783|gb|EEK48643.1| Ribonuclease PH [Bacillus cereus ATCC 10876] Length = 258 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 14 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 191 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 251 Query: 240 N 240 + Sbjct: 252 D 252 >gi|330859984|emb|CBX70312.1| ribonuclease PH [Yersinia enterocolitica W22703] Length = 239 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 114/213 (53%), Positives = 150/213 (70%), Gaps = 2/213 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + S K + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 EDS + D N VM + G ++EVQG+AE FS Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSH 211 >gi|261346766|ref|ZP_05974410.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541] gi|282565165|gb|EFB70700.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541] Length = 237 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 118/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +QMR I +TR +K+AEGS L++FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCTATVEDGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L +M K S LK VAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALNNM-IAQGKITKSP-LKAMVAAVSVGIVKQEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM D G ++EVQG+AE FS + +L LAK + + + Q++ + Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQREAL 236 >gi|297199995|ref|ZP_06917392.1| ribonuclease PH [Streptomyces sviceus ATCC 29083] gi|197710467|gb|EDY54501.1| ribonuclease PH [Streptomyces sviceus ATCC 29083] Length = 245 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 112/237 (47%), Positives = 155/237 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKLIKAGRRPLTGTVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V T G VEVQG+AE F++D ++L+LA ++L LQ + Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFARDELNSLLDLAVLGCSELTVLQSKAL 239 >gi|65321848|ref|ZP_00394807.1| COG0689: RNase PH [Bacillus anthracis str. A2012] Length = 258 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 14 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 191 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 251 Query: 240 N 240 + Sbjct: 252 D 252 >gi|311896220|dbj|BAJ28628.1| putative ribonuclease PH [Kitasatospora setae KM-6054] Length = 241 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 111/237 (46%), Positives = 156/237 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +++ R SK+AEGS LV +GDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVTIERNWSKHAEGSVLVSYGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D AL I++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDHRALAENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q + G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALVDAVSWAREKKLLRAKGQPITGGVSAVSVGIIDGVPMLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V T G VEVQG+AE A F +D +L+L A+L ++Q+ + Sbjct: 183 DVRAETDMNIVCTSDGRFVEVQGTAEGAPFDRDLLNQLLDLGSLGCAELDEIQRKAL 239 >gi|229117982|ref|ZP_04247342.1| Ribonuclease PH [Bacillus cereus Rock1-3] gi|228665431|gb|EEL20913.1| Ribonuclease PH [Bacillus cereus Rock1-3] Length = 245 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|311743617|ref|ZP_07717423.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272] gi|311312747|gb|EFQ82658.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272] Length = 240 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 115/238 (48%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R+I +TR +A+GSCL++FG T +L A E VP W + + GW+TA Sbjct: 4 REDGRAVDQLRDIRITRGWLDHAQGSCLIEFGKTRVLCAAAASEGVPRWRKGSGLGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP++T +R RE+V GR GGR+ EI R++GR+LR+ +D ALG I IDCDV+QA Sbjct: 64 EYAMLPQATHDRSSRESVKGRIGGRTHEISRLVGRSLRATIDDKALGENTITIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA++AL D + H++ + L VAAIS G++ G P++DL Y E Sbjct: 124 DGGTRTAAITGAYIALADAVAHLKGLGATA--GEPLVESVAAISVGIVDGVPMLDLPYVE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG VEVQG+AE F + A+L LA ADL +LQ + +S Sbjct: 182 DVRAHTDMNVVMTGSGAFVEVQGTAEGQPFDKAELDALLELAAGGCADLTRLQTEALS 239 >gi|269120934|ref|YP_003309111.1| ribonuclease PH [Sebaldella termitidis ATCC 33386] gi|268614812|gb|ACZ09180.1| ribonuclease PH [Sebaldella termitidis ATCC 33386] Length = 232 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 153/234 (65%), Gaps = 4/234 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +++REI +T+ + EGS L++FG+T ++ AT+EEKVP +++ + GW+T Sbjct: 1 MRNNNRKNDELREIKITKNFIMHPEGSVLIEFGNTKVICNATVEEKVPPFLKGSGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R +RE G+ GR+ EIQR+IGR+LRS VDL LG R II+DCDVIQ Sbjct: 61 AEYSMIPRATNVRTQREVNKGKPTGRTMEIQRLIGRSLRSAVDLKKLGERTIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITG ++AL ++ + N LSQ + VAAIS G + G ++DL+Y Sbjct: 121 ADGGTRTASITGGYLALETAVEQL---INSGLLSQNPVIAKVAAISVGKVKGEILLDLEY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS +VD N VM +E+QG+ E ATFS D + AK L ++ Sbjct: 178 SEDSLAEVDMNIVMNSKNEFIEIQGTGEEATFSYDELIKFIEAAKKGFEKLFEI 231 >gi|269955862|ref|YP_003325651.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894] gi|269304543|gb|ACZ30093.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894] Length = 262 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 155/240 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TR AEGS LV+FG T +L A+ E VP W + + GW+TA Sbjct: 20 RADGRAPDELRAVKITRGWLDAAEGSVLVEFGGTRVLCAASFTEGVPRWKKGSGEGWVTA 79 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+++D+SALG I++DCDV+QA Sbjct: 80 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAIIDVSALGENTIVLDCDVLQA 139 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + +VL V+A+S G++ G P++DL Y E Sbjct: 140 DGGTRTAAITGAYVALADAVAWGRRHGHIKGGKEVLTDSVSAVSVGIVDGVPMLDLPYVE 199 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D N V+T SG VEVQG+AE F + A+L+LA A L +LQ+ ++ E Sbjct: 200 DVRAGTDMNVVVTGSGTFVEVQGTAEHGAFDRAELDALLDLAVAGNARLAELQRAALAEE 259 >gi|229032136|ref|ZP_04188113.1| Ribonuclease PH [Bacillus cereus AH1271] gi|228729192|gb|EEL80191.1| Ribonuclease PH [Bacillus cereus AH1271] Length = 245 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVQEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|255102475|ref|ZP_05331452.1| ribonuclease PH [Clostridium difficile QCD-63q42] Length = 449 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 157/233 (67%), Gaps = 2/233 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VA+ + + + ++ + V+AIS G++ G ++DL Y EDS Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTIKEMP--ITNFVSAISVGIVNGIHMLDLCYEEDSKA 184 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ + Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREAL 237 >gi|254976907|ref|ZP_05273379.1| ribonuclease PH [Clostridium difficile QCD-66c26] gi|255316047|ref|ZP_05357630.1| ribonuclease PH [Clostridium difficile QCD-76w55] gi|255518704|ref|ZP_05386380.1| ribonuclease PH [Clostridium difficile QCD-97b34] gi|255651826|ref|ZP_05398728.1| ribonuclease PH [Clostridium difficile QCD-37x79] gi|260684852|ref|YP_003216137.1| ribonuclease Ph [Clostridium difficile CD196] gi|260688510|ref|YP_003219644.1| ribonuclease Ph [Clostridium difficile R20291] gi|306521613|ref|ZP_07407960.1| ribonuclease Ph [Clostridium difficile QCD-32g58] gi|260211015|emb|CBA66330.1| ribonuclease Ph [Clostridium difficile CD196] gi|260214527|emb|CBE07044.1| ribonuclease Ph [Clostridium difficile R20291] Length = 449 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 157/233 (67%), Gaps = 2/233 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VA+ + + + ++ + V+AIS G++ G ++DL Y EDS Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTIKEMP--ITNFVSAISVGIVNGIHMLDLCYEEDSKA 184 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ + Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREAL 237 >gi|75760745|ref|ZP_00740767.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899648|ref|YP_002448059.1| ribonuclease PH [Bacillus cereus G9842] gi|228903010|ref|ZP_04067149.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222] gi|228967584|ref|ZP_04128608.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001] gi|226736885|sp|B7IIZ1|RNPH_BACC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|74491773|gb|EAO54967.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218545068|gb|ACK97462.1| ribonuclease PH [Bacillus cereus G9842] gi|228792108|gb|EEM39686.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001] gi|228856603|gb|EEN01124.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222] Length = 245 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDMQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|317124457|ref|YP_004098569.1| RNAse PH [Intrasporangium calvum DSM 43043] gi|315588545|gb|ADU47842.1| RNAse PH [Intrasporangium calvum DSM 43043] Length = 256 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 155/239 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++ RE+ +TR +AEGS LV+FG T +L A+ E VP W++ GW+TA Sbjct: 11 RHDGRAPDETREVRITRGWLDHAEGSVLVEFGRTRVLCAASFTEGVPRWLKGRGTGWVTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 71 EYAMLPRATNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDTKALGENTIVLDCDVLQA 130 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + +Q L G VAA+S G++ G ++DLDY E Sbjct: 131 DGGTRTAAITGAYVALADAIEDARARGLIAKGAQPLTGSVAAVSVGIVGGRAVIDLDYPE 190 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DST + D N VMT G +EVQG+AE F + +L LA ADL Q+ +++ Sbjct: 191 DSTAETDMNVVMTGDGRYIEVQGTAEGEPFDRALLDDLLELAAKGCADLTAAQRAALAS 249 >gi|50955004|ref|YP_062292.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07] gi|61215900|sp|Q6AEK9|RNPH_LEIXX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|50951486|gb|AAT89187.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07] Length = 251 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 112/239 (46%), Positives = 155/239 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R +++ R ++ AEGS LV FG T +L TA+ VP W+ GW+T Sbjct: 5 IRADGRTADQLRPVTIERAWNRKAEGSALVSFGGTRVLCTASFTNGVPRWMSGKGRGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R+ RE+V GR GGR+ EI R+IGR+LR+VVD+ ALG I++DCDV+Q Sbjct: 65 AEYAMLPRSTNDRMDRESVKGRIGGRTHEISRLIGRSLRAVVDMKALGENTIVLDCDVLQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D L+ + Q + L V+A+S G++ G P++DL Y Sbjct: 125 ADGGTRTAAITGAYVALADALEWGREHRFIGQKAAPLLDSVSAVSVGIVDGSPMLDLAYT 184 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D N V+T G VEVQG+AE A F + +L+LA L+ +Q ++ Sbjct: 185 EDVRAETDMNVVVTGRGLFVEVQGTAEGAPFDRSELNGLLDLALAGTTALVAVQSAALA 243 >gi|30022573|ref|NP_834204.1| ribonuclease PH [Bacillus cereus ATCC 14579] gi|42783632|ref|NP_980879.1| ribonuclease PH [Bacillus cereus ATCC 10987] gi|206969838|ref|ZP_03230792.1| ribonuclease PH [Bacillus cereus AH1134] gi|206976011|ref|ZP_03236921.1| ribonuclease PH [Bacillus cereus H3081.97] gi|217961976|ref|YP_002340546.1| ribonuclease PH [Bacillus cereus AH187] gi|222097944|ref|YP_002532001.1| ribonuclease ph [Bacillus cereus Q1] gi|228910315|ref|ZP_04074132.1| Ribonuclease PH [Bacillus thuringiensis IBL 200] gi|228960757|ref|ZP_04122396.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str. T13001] gi|228987732|ref|ZP_04147843.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229048198|ref|ZP_04193767.1| Ribonuclease PH [Bacillus cereus AH676] gi|229071999|ref|ZP_04205209.1| Ribonuclease PH [Bacillus cereus F65185] gi|229081747|ref|ZP_04214240.1| Ribonuclease PH [Bacillus cereus Rock4-2] gi|229111953|ref|ZP_04241497.1| Ribonuclease PH [Bacillus cereus Rock1-15] gi|229129777|ref|ZP_04258744.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4] gi|229141223|ref|ZP_04269762.1| Ribonuclease PH [Bacillus cereus BDRD-ST26] gi|229147051|ref|ZP_04275411.1| Ribonuclease PH [Bacillus cereus BDRD-ST24] gi|229152684|ref|ZP_04280872.1| Ribonuclease PH [Bacillus cereus m1550] gi|229158099|ref|ZP_04286169.1| Ribonuclease PH [Bacillus cereus ATCC 4342] gi|229180760|ref|ZP_04308098.1| Ribonuclease PH [Bacillus cereus 172560W] gi|229198610|ref|ZP_04325312.1| Ribonuclease PH [Bacillus cereus m1293] gi|296504969|ref|YP_003666669.1| ribonuclease PH [Bacillus thuringiensis BMB171] gi|61215974|sp|Q72ZT1|RNPH_BACC1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61216033|sp|Q817P3|RNPH_BACCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736887|sp|B7HQP4|RNPH_BACC7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808580|sp|B9IZ73|RNPH_BACCQ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|29898131|gb|AAP11405.1| Ribonuclease PH [Bacillus cereus ATCC 14579] gi|42739561|gb|AAS43487.1| ribonuclease PH [Bacillus cereus ATCC 10987] gi|206735526|gb|EDZ52694.1| ribonuclease PH [Bacillus cereus AH1134] gi|206745763|gb|EDZ57160.1| ribonuclease PH [Bacillus cereus H3081.97] gi|217063584|gb|ACJ77834.1| ribonuclease PH [Bacillus cereus AH187] gi|221242002|gb|ACM14712.1| ribonuclease PH [Bacillus cereus Q1] gi|228584892|gb|EEK43008.1| Ribonuclease PH [Bacillus cereus m1293] gi|228602738|gb|EEK60221.1| Ribonuclease PH [Bacillus cereus 172560W] gi|228625418|gb|EEK82175.1| Ribonuclease PH [Bacillus cereus ATCC 4342] gi|228630830|gb|EEK87471.1| Ribonuclease PH [Bacillus cereus m1550] gi|228636439|gb|EEK92909.1| Ribonuclease PH [Bacillus cereus BDRD-ST24] gi|228642264|gb|EEK98556.1| Ribonuclease PH [Bacillus cereus BDRD-ST26] gi|228653693|gb|EEL09564.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4] gi|228671517|gb|EEL26817.1| Ribonuclease PH [Bacillus cereus Rock1-15] gi|228701592|gb|EEL54085.1| Ribonuclease PH [Bacillus cereus Rock4-2] gi|228711158|gb|EEL63123.1| Ribonuclease PH [Bacillus cereus F65185] gi|228723185|gb|EEL74561.1| Ribonuclease PH [Bacillus cereus AH676] gi|228772006|gb|EEM20461.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228798973|gb|EEM45948.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str. T13001] gi|228849375|gb|EEM94212.1| Ribonuclease PH [Bacillus thuringiensis IBL 200] gi|296326021|gb|ADH08949.1| ribonuclease PH [Bacillus thuringiensis BMB171] gi|324328384|gb|ADY23644.1| ribonuclease PH [Bacillus thuringiensis serovar finitimus YBT-020] Length = 245 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|188588196|ref|YP_001919836.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43] gi|251780372|ref|ZP_04823292.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226736898|sp|B2UZ31|RNPH_CLOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|188498477|gb|ACD51613.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43] gi|243084687|gb|EES50577.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 249 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 111/236 (47%), Positives = 157/236 (66%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R + +TR +KYAEGS ++ GDT +L ++E+KVP +++ T GWIT Sbjct: 1 MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R R+ + GR+ EIQR+IGRALRSVVDL ALG + + IDCDVIQ Sbjct: 61 AEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT AI+GA++AL D + + F++ + + VAA+S G++ I+DL Y Sbjct: 121 ADGGTRTTAISGAFIALVDAVNKLHKIK-PFKIYPI-RSFVAAVSVGIVNEEKILDLCYQ 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD N +MTD G VEVQG+ E + +++ +L+L + I +I +QK+ Sbjct: 179 EDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRTELNELLDLGEKGIKQMINVQKE 234 >gi|228954763|ref|ZP_04116785.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|107124175|gb|ABF83610.1| Rph [Bacillus thuringiensis serovar kurstaki] gi|228804961|gb|EEM51558.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 245 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQVEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|228941669|ref|ZP_04104216.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974596|ref|ZP_04135162.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981191|ref|ZP_04141491.1| Ribonuclease PH [Bacillus thuringiensis Bt407] gi|228778391|gb|EEM26658.1| Ribonuclease PH [Bacillus thuringiensis Bt407] gi|228784999|gb|EEM33012.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817881|gb|EEM63959.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942277|gb|AEA18173.1| ribonuclease PH [Bacillus thuringiensis serovar chinensis CT-43] Length = 245 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDIQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|223365844|pdb|3DD6|A Chain A, Crystal Structure Of Rph, An Exoribonuclease From Bacillus Anthracis At 1.7 A Resolution Length = 255 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 11 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 71 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 131 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 188 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 189 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 248 Query: 240 N 240 + Sbjct: 249 D 249 >gi|329119666|ref|ZP_08248347.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327464263|gb|EGF10567.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 241 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R + +T +A+GS L++ G+T ++ TA+++E VP ++R GWITAEYGM Sbjct: 9 RAADALRPVRITPHFLPHADGSALIECGNTRVICTASIDENVPPFLRGQGQGWITAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP +T R +REA +G+Q GR+QEIQR+IGR+LR+ DL LG RQI+IDCDVIQADGGT Sbjct: 69 LPAATATRSRREAAAGKQSGRTQEIQRLIGRSLRAAADLQKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL ++ + S+ L +AA+S G++ G P++DLDY EDS Sbjct: 129 RTASITGAYVALALAVRKL--LSDGLIAENPLVSQIAAVSAGIVGGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VM +G I+E+QG+AE A FS A+L LA+ I +L+ QK ++ Sbjct: 187 DSDVNIVMNGAGGIIEIQGTAEGAPFSPAELAALLRLAQKGIGELMAEQKRALA 240 >gi|118418871|gb|ABK87290.1| RNAse PH [Bacillus thuringiensis str. Al Hakam] Length = 251 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 7 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 66 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 67 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 127 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 184 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 185 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 244 Query: 240 N 240 + Sbjct: 245 D 245 >gi|196230861|ref|ZP_03129722.1| ribonuclease PH [Chthoniobacter flavus Ellin428] gi|196225202|gb|EDY19711.1| ribonuclease PH [Chthoniobacter flavus Ellin428] Length = 256 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 156/241 (64%), Gaps = 4/241 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGWI 59 R GR+ +Q+R IS T ++ ++ GS LV G+T ++ +A +EE +P W++ K GW+ Sbjct: 3 RNDGRKNDQLRPISFTPNIAPHSTGSVLVAAGNTRVICSAMIEESIPNWMKFQKVPGGWL 62 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP ST R +R++ GR GRS EIQR+IGR+LR+VVDL LG R + IDCDV+ Sbjct: 63 TAEYSMLPYSTLERKQRDSAKGRIDGRSVEIQRLIGRSLRAVVDLDLLGPRTLCIDCDVL 122 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA+ITGA VA ++ + K +K VAA+S G++ G P++DL+Y Sbjct: 123 QADGGTRTASITGACVAASLAVEKL--IEKKLLTKSPIKQLVAAVSVGVVNGEPMLDLNY 180 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED VD N VMT +G VEVQGS E TFS+ AM+ L K I +LI Q+ IS Sbjct: 181 LEDKDASVDMNLVMTANGQFVEVQGSGEEQTFSESELAAMMTLGKKGIGELIAAQRAAIS 240 Query: 240 N 240 + Sbjct: 241 S 241 >gi|30264550|ref|NP_846927.1| ribonuclease PH [Bacillus anthracis str. Ames] gi|47530015|ref|YP_021364.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor'] gi|49187372|ref|YP_030624.1| ribonuclease PH [Bacillus anthracis str. Sterne] gi|49481507|ref|YP_038534.1| ribonuclease PH [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141017|ref|YP_085813.1| ribonuclease PH [Bacillus cereus E33L] gi|162382773|ref|YP_896797.2| ribonuclease PH [Bacillus thuringiensis str. Al Hakam] gi|165871495|ref|ZP_02216142.1| ribonuclease PH [Bacillus anthracis str. A0488] gi|167635642|ref|ZP_02393954.1| ribonuclease PH [Bacillus anthracis str. A0442] gi|167641666|ref|ZP_02399911.1| ribonuclease PH [Bacillus anthracis str. A0193] gi|170688310|ref|ZP_02879520.1| ribonuclease PH [Bacillus anthracis str. A0465] gi|170708334|ref|ZP_02898778.1| ribonuclease PH [Bacillus anthracis str. A0389] gi|177653076|ref|ZP_02935363.1| ribonuclease PH [Bacillus anthracis str. A0174] gi|190566932|ref|ZP_03019848.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I] gi|196034453|ref|ZP_03101862.1| ribonuclease PH [Bacillus cereus W] gi|196039169|ref|ZP_03106475.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99] gi|196044912|ref|ZP_03112146.1| ribonuclease PH [Bacillus cereus 03BB108] gi|218905683|ref|YP_002453517.1| ribonuclease PH [Bacillus cereus AH820] gi|225866464|ref|YP_002751842.1| ribonuclease PH [Bacillus cereus 03BB102] gi|227817261|ref|YP_002817270.1| ribonuclease PH [Bacillus anthracis str. CDC 684] gi|228929528|ref|ZP_04092547.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935800|ref|ZP_04098612.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948205|ref|ZP_04110489.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093577|ref|ZP_04224678.1| Ribonuclease PH [Bacillus cereus Rock3-42] gi|229124021|ref|ZP_04253213.1| Ribonuclease PH [Bacillus cereus 95/8201] gi|229186723|ref|ZP_04313881.1| Ribonuclease PH [Bacillus cereus BGSC 6E1] gi|229601018|ref|YP_002868764.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248] gi|254687030|ref|ZP_05150888.1| ribonuclease PH [Bacillus anthracis str. CNEVA-9066] gi|254724592|ref|ZP_05186375.1| ribonuclease PH [Bacillus anthracis str. A1055] gi|254736584|ref|ZP_05194290.1| ribonuclease PH [Bacillus anthracis str. Western North America USA6153] gi|254741622|ref|ZP_05199309.1| ribonuclease PH [Bacillus anthracis str. Kruger B] gi|254754780|ref|ZP_05206815.1| ribonuclease PH [Bacillus anthracis str. Vollum] gi|254757612|ref|ZP_05209639.1| ribonuclease PH [Bacillus anthracis str. Australia 94] gi|301055992|ref|YP_003794203.1| ribonuclease PH [Bacillus anthracis CI] gi|61215848|sp|Q633V4|RNPH_BACCZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215928|sp|Q6HD42|RNPH_BACHK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61216034|sp|Q81LA9|RNPH_BACAN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736884|sp|B7JQ74|RNPH_BACC0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808577|sp|C3PA74|RNPH_BACAA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808578|sp|C3L7T5|RNPH_BACAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808579|sp|C1ETS9|RNPH_BACC3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|30259208|gb|AAP28413.1| tRNA nucleotidyltransferase [Bacillus anthracis str. Ames] gi|47505163|gb|AAT33839.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor'] gi|49181299|gb|AAT56675.1| ribonuclease PH [Bacillus anthracis str. Sterne] gi|49333063|gb|AAT63709.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974486|gb|AAU16036.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus cereus E33L] gi|164712792|gb|EDR18322.1| ribonuclease PH [Bacillus anthracis str. A0488] gi|167510373|gb|EDR85774.1| ribonuclease PH [Bacillus anthracis str. A0193] gi|167529062|gb|EDR91817.1| ribonuclease PH [Bacillus anthracis str. A0442] gi|170126709|gb|EDS95592.1| ribonuclease PH [Bacillus anthracis str. A0389] gi|170667816|gb|EDT18569.1| ribonuclease PH [Bacillus anthracis str. A0465] gi|172081600|gb|EDT66671.1| ribonuclease PH [Bacillus anthracis str. A0174] gi|190561923|gb|EDV15892.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I] gi|195992995|gb|EDX56954.1| ribonuclease PH [Bacillus cereus W] gi|196024400|gb|EDX63073.1| ribonuclease PH [Bacillus cereus 03BB108] gi|196029796|gb|EDX68397.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99] gi|218536266|gb|ACK88664.1| ribonuclease PH [Bacillus cereus AH820] gi|225790478|gb|ACO30695.1| tRNA nucleotidyltransferase [Bacillus cereus 03BB102] gi|227004760|gb|ACP14503.1| tRNA nucleotidyltransferase [Bacillus anthracis str. CDC 684] gi|228596736|gb|EEK54398.1| Ribonuclease PH [Bacillus cereus BGSC 6E1] gi|228659323|gb|EEL14971.1| Ribonuclease PH [Bacillus cereus 95/8201] gi|228689786|gb|EEL43592.1| Ribonuclease PH [Bacillus cereus Rock3-42] gi|228811563|gb|EEM57900.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823857|gb|EEM69677.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830107|gb|EEM75725.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265426|gb|ACQ47063.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248] gi|300378161|gb|ADK07065.1| ribonuclease PH [Bacillus cereus biovar anthracis str. CI] Length = 245 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|300932726|ref|ZP_07147982.1| ribonuclease PH [Corynebacterium resistens DSM 45100] Length = 250 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 112/238 (47%), Positives = 158/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++MR + +TR + GS LV+FG+T ++ TA++E VP + +++ GW+TA Sbjct: 11 RADGRAVDEMRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVEIGVPRFKKDSGEGWLTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R+ RE++ G+ GR+ EI R++GRALR+ VDL+ LG I IDCDV+QA Sbjct: 71 EYAMLPSSTHERMPRESMKGKVKGRTHEISRLVGRALRAAVDLTQLGENTIAIDCDVLQA 130 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L+ +++ + L VAA+S G++ G +DL Y E Sbjct: 131 DGGTRTAAITGAYVALADALKVLKE--QGVVPGEPLLPPVAAVSVGIIDGVACLDLPYEE 188 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS DVD N VMT+ G VE+QG+ E A F + AMLNLA+ + +LI QK+ ++ Sbjct: 189 DSRADVDMNVVMTEQGRFVEIQGTGEHAEFDRAELNAMLNLAEGGLRELISAQKEALA 246 >gi|187933801|ref|YP_001884652.1| ribonuclease PH [Clostridium botulinum B str. Eklund 17B] gi|226736899|sp|B2TJ05|RNPH_CLOBB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|187721954|gb|ACD23175.1| tRNA nucleotidyltransferase [Clostridium botulinum B str. Eklund 17B] Length = 249 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 111/236 (47%), Positives = 157/236 (66%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R + +TR +KYAEGS ++ GDT +L ++E+KVP +++ T GWIT Sbjct: 1 MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R R+ + GR+ EIQR+IGRALRSVVDL ALG + + IDCDVIQ Sbjct: 61 AEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT AI+GA++AL D + + F++ + + VAA+S G++ I+DL Y Sbjct: 121 ADGGTRTTAISGAFIALVDAVNKLHKIK-PFKIYPI-RSFVAAVSVGIVNEEKILDLCYQ 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD N +MTD G VEVQG+ E + +++ +L+L + I +I +QK+ Sbjct: 179 EDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRAELNELLDLGEKGIKQMINVQKE 234 >gi|237785978|ref|YP_002906683.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385] gi|259494118|sp|C4LJY5|RNPH_CORK4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|237758890|gb|ACR18140.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385] Length = 254 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 105/240 (43%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR ++MR + + R + GS LV+FG+T ++ TA++E++VP + +++ GW+T Sbjct: 5 VRADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGWLT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ +DL ALG I +DCDV+Q Sbjct: 65 AEYSMLPSATAERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLKALGENTIALDCDVLQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D L ++E + L VAA+S G++ G+ +DL Y Sbjct: 125 ADGGTRTASITGAYVALADALTYLE--AEGLVSQNALLPPVAAVSVGLIDGHVCLDLPYE 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N VMT+SG VE+QG+ E +TFS++ ++ A+ ++LI+ QK+ +S Sbjct: 183 EDSRAEVDMNVVMTESGEFVEIQGTGEHSTFSREQLMQFMDAAEKGCSELIRAQKEALSK 242 >gi|255094294|ref|ZP_05323772.1| ribonuclease PH [Clostridium difficile CIP 107932] Length = 378 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 157/233 (67%), Gaps = 2/233 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI AEY M Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VA+ + + + ++ + V+AIS G++ G ++DL Y EDS Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTIKEMP--ITNFVSAISVGIVNGIHMLDLCYEEDSKA 184 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ + Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREAL 237 >gi|162147173|ref|YP_001601634.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5] gi|161785750|emb|CAP55321.1| putative Ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5] Length = 275 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 118/237 (49%), Positives = 157/237 (66%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R IS+ + +AEGS L++ G T +L AT+E +VP ++R GW+TA Sbjct: 31 RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTA 90 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG I +DCDV+ A Sbjct: 91 EYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNA 150 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVAL L+ + N+ L VAA+SCG+ ++DLDY E Sbjct: 151 DGGTRCASITGAWVALRLALETL--VRNRVLARLPLTAQVAAVSCGLTGAGAVLDLDYDE 208 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS DANFV+T++G IVE+Q +AE A F+QD F +L LA+ A L Q+ + Sbjct: 209 DSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQRQAV 265 >gi|16800270|ref|NP_470538.1| ribonuclease PH [Listeria innocua Clip11262] gi|21759406|sp|Q92CH1|RNPH_LISIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|16413660|emb|CAC96432.1| lin1201 [Listeria innocua Clip11262] Length = 248 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 165/245 (67%), Gaps = 7/245 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR++N +REI +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGML-CGYPIVDL 177 ADGGTRTA+ITGA++A+ + +++ KF +K +AA S G+L G ++DL Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEEVPFTKFP----VKDFLAATSVGVLEEGGTVLDL 176 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +Y EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ Sbjct: 177 NYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKET 236 Query: 238 ISNEV 242 + +++ Sbjct: 237 LGDKI 241 >gi|296328289|ref|ZP_06870818.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154593|gb|EFG95381.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 434 Score = 221 bits (563), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 110/241 (45%), Positives = 157/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEEDPLISNVAAISVGKINSNLMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+ Sbjct: 180 EDFAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|312143229|ref|YP_003994675.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus'] gi|311903880|gb|ADQ14321.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus'] Length = 239 Score = 221 bits (563), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 111/236 (47%), Positives = 164/236 (69%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +Q+R+I +TR +KYAEGS LV+ GDT +L ++E+ VP ++R GW+T Sbjct: 1 MRNDGRELDQLRDIQITRDFTKYAEGSVLVETGDTMVLCNVSIEDSVPYFLRGQNTGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPR+T +R REA + GR+QEIQR+IGR+LR+++DL +G R I +DCDV+Q Sbjct: 61 AEYSLLPRATQDRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLDKMGERTIWVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VAL D + + + +LS+ LK +AA S G++ G ++DL Y Sbjct: 121 ADGGTRTASITGAYVALVDAVNFL---LAEGKLSENPLKDFMAATSVGIVEGKAMLDLCY 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED VD N MT++G I+E+QG+AE F+++ + +LA+ I +LI++QK Sbjct: 178 EEDFRAQVDMNIAMTENGEIIEIQGTAEENPFTREEMNKLYDLAEKGIRELIEIQK 233 >gi|257466146|ref|ZP_05630457.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563] gi|315917304|ref|ZP_07913544.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563] gi|313691179|gb|EFS28014.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563] Length = 249 Score = 221 bits (563), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 117/237 (49%), Positives = 163/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ENQ+REI +TR + +AEGS L++ G+T ++ TA++ EKVP +I+NT GW+TA Sbjct: 3 RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+TG R +REA G+ GR+ EIQR+IGRALRS +DL LG R I +DCDVIQA Sbjct: 63 EYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ + S VL VAA+S G G +DL+Y E Sbjct: 123 DGGTRTASITGAFVAMAIAAAKLLR-EGTITESPVLS-SVAAVSVGKCEGNIFLDLNYVE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS+ +VD N + D G +EVQG+ E ATF + A+L++A+ I L++ Q++V+ Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQREVL 237 >gi|228917119|ref|ZP_04080677.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842537|gb|EEM87627.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 245 Score = 221 bits (563), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLRAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|315302796|ref|ZP_07873561.1| ribonuclease PH [Listeria ivanovii FSL F6-596] gi|313628833|gb|EFR97201.1| ribonuclease PH [Listeria ivanovii FSL F6-596] Length = 248 Score = 221 bits (563), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 116/243 (47%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + + D F V K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKL-DAEVPFTKFPV-KDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K IA+LI++QK+ + Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLG 238 Query: 240 NEV 242 +V Sbjct: 239 EKV 241 >gi|313619283|gb|EFR91024.1| ribonuclease PH [Listeria innocua FSL S4-378] gi|313624060|gb|EFR94144.1| ribonuclease PH [Listeria innocua FSL J1-023] Length = 248 Score = 221 bits (563), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 165/245 (67%), Gaps = 7/245 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR++N +REI +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGML-CGYPIVDL 177 ADGGTRTA+ITGA++A+ + +++ KF +K +AA S G+L G ++DL Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEEVPFTKFP----VKDFLAATSVGVLEEGGTVLDL 176 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +Y EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ Sbjct: 177 NYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQKET 236 Query: 238 ISNEV 242 + +++ Sbjct: 237 LGDKI 241 >gi|209544228|ref|YP_002276457.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5] gi|209531905|gb|ACI51842.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5] Length = 248 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 118/237 (49%), Positives = 157/237 (66%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R IS+ + +AEGS L++ G T +L AT+E +VP ++R GW+TA Sbjct: 4 RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG I +DCDV+ A Sbjct: 64 EYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVAL L+ + N+ L VAA+SCG+ ++DLDY E Sbjct: 124 DGGTRCASITGAWVALRLALETL--VRNRVLARLPLTAQVAAVSCGLTGAGAVLDLDYDE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS DANFV+T++G IVE+Q +AE A F+QD F +L LA+ A L Q+ + Sbjct: 182 DSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQRQAV 238 >gi|326330800|ref|ZP_08197101.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1] gi|325951330|gb|EGD43369.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1] Length = 235 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 114/239 (47%), Positives = 152/239 (63%), Gaps = 7/239 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R I +TR +A GS L++FG T +L A+ E VP W + + GW+TA Sbjct: 4 RADGRADDELRPIKITRNWLDHAAGSVLIEFGKTRVLCAASASEGVPRWRKGSGLGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+V G+ GGR+ EI R++GR+LR+V+D ALG I IDCDV+QA Sbjct: 64 EYAMLPASTHERSSRESVKGKIGGRTHEISRLVGRSLRAVIDYKALGENTINIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + +S+ L G VAAIS G++ G P +DL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVASL-------GVSKALTGSVAAISVGIIDGVPRLDLPYEE 176 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N VMT G VEVQG+AE F + A+L L + ADL KLQ+ ++ Sbjct: 177 DVRAETDMNIVMTGEGKFVEVQGTAEGVAFDRAELDALLALGEKGCADLTKLQEAALAG 235 >gi|293374133|ref|ZP_06620467.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909] gi|325837445|ref|ZP_08166427.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1] gi|292647236|gb|EFF65212.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909] gi|325490977|gb|EGC93275.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1] Length = 236 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 111/237 (46%), Positives = 152/237 (64%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ N++R + + EG+ L+ G+T ++ TAT+E K+P ++R GWIT Sbjct: 1 MRTNERKNNELRPVEFIPNYIMHPEGAVLISVGNTKVICTATIENKLPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+ VDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNTRNVRESARGKLSGRTMEIQRLIGRSLRAAVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG+ VA+ + + LK H+AAIS G+ G I+DLDY Sbjct: 121 ADGGTRTASITGSVVAMKLAFDKL--VAEGVLKESPLKEHLAAISVGIKDGEVILDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS+ +VD N +MT+SG VE+QG+ E AT+S ML++A I LI+ QK + Sbjct: 179 EDSSAEVDMNVIMTESGQFVEIQGTGEEATYSHAELLQMLDVASQGIKQLIEAQKQI 235 >gi|254434220|ref|ZP_05047728.1| ribonuclease PH [Nitrosococcus oceani AFC27] gi|207090553|gb|EDZ67824.1| ribonuclease PH [Nitrosococcus oceani AFC27] Length = 210 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 107/210 (50%), Positives = 149/210 (70%), Gaps = 2/210 (0%) Query: 30 VKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89 ++FG+T ++ A++E+++P +++ T GWITAEYGMLPRST NR+ REA GRQGGR+ E Sbjct: 1 MEFGNTRVICNASVEDRIPRFLKGTGRGWITAEYGMLPRSTHNRMGREAAQGRQGGRTLE 60 Query: 90 IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149 IQR IGRALR+VVDL+ALG + +DCDVIQADGGTRTAAITG++VAL D + + Sbjct: 61 IQRFIGRALRAVVDLAALGEVTVTLDCDVIQADGGTRTAAITGSYVALVDAINNR--LKK 118 Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209 + + G +A+IS G+ G P++DLDY EDST + D N VM ++G +E+QG+AE Sbjct: 119 RIITHSPIHGQLASISVGIYEGTPVLDLDYREDSTAETDMNVVMNEAGAFIEIQGTAEGH 178 Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 F + AML+LAK I L+ Q +V++ Sbjct: 179 AFRMNELQAMLDLAKSGINTLLAQQTEVLA 208 >gi|317508770|ref|ZP_07966420.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974] gi|316252933|gb|EFV12353.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974] Length = 261 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 112/238 (47%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR +++MR + +TR + GS LV+FG T + A++ E VP W + T GW+TA Sbjct: 4 RLDGRHDDEMRPVKITRGFTGNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPAATATRNDRESVRGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + S + Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAFVALSDAVTWLA-ASGRLADPQPISCAIAAVSVGLVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+AE ATF + +L+LA I L+ Q++ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTAEGATFHRKTLDKLLDLAFAGIEQLVVAQREALA 240 >gi|229105117|ref|ZP_04235768.1| Ribonuclease PH [Bacillus cereus Rock3-28] gi|228678298|gb|EEL32524.1| Ribonuclease PH [Bacillus cereus Rock3-28] Length = 258 Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 14 MRVDGRGKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVGEQGVVLDLNY 191 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 251 Query: 240 N 240 + Sbjct: 252 D 252 >gi|212712586|ref|ZP_03320714.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM 30120] gi|212684802|gb|EEB44330.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM 30120] Length = 237 Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 118/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +QMR I +TR +K+AEGS L++FGDT +L AT+EE VP +++ GWIT Sbjct: 1 MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L +M K S LK VAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALNNMV-AQGKLAKSP-LKSMVAAVSVGIVGQEGLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FS + +L LAK + + + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQREAL 236 >gi|171741378|ref|ZP_02917185.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC 27678] gi|283455270|ref|YP_003359834.1| ribonuclease PH [Bifidobacterium dentium Bd1] gi|306823668|ref|ZP_07457043.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679] gi|309803034|ref|ZP_07697135.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022] gi|171276992|gb|EDT44653.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC 27678] gi|283101904|gb|ADB09010.1| rph Ribonuclease PH [Bifidobacterium dentium Bd1] gi|304553375|gb|EFM41287.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679] gi|308220501|gb|EFO76812.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022] Length = 254 Score = 221 bits (562), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 108/224 (48%), Positives = 153/224 (68%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TRR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 14 IRADGRKVDELRPVRITRRFTDVPEGSVLIECGNTRVMCTATFTSGVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q Sbjct: 74 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ E + +VLK V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAERHRHIKSADRVLKDCVSAVSVGVINGKPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS D N MT SG +E+QG+AE FS+ A+L+LA+ Sbjct: 194 EDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFSRAELNALLDLAE 237 >gi|152976902|ref|YP_001376419.1| ribonuclease PH [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189043753|sp|A7GTG6|RNPH_BACCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|152025654|gb|ABS23424.1| ribonuclease PH [Bacillus cytotoxicus NVH 391-98] Length = 245 Score = 221 bits (562), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ ++R + + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREVRELRHVHIHTNYLKHPEGSVLIEVGDTKVICSATVEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEVLGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G+L +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVTKIP--VKDYLAATSVGILEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT GH VEVQG+ E ATFS+ +L+ A+ I LI+ QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGHFVEVQGTGEEATFSRAQLNELLDAAEHGILQLIEKQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|313633649|gb|EFS00407.1| ribonuclease PH [Listeria seeligeri FSL N1-067] Length = 251 Score = 221 bits (562), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 116/243 (47%), Positives = 161/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 4 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 64 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + + D F V K +AA S G+L G ++DL+Y Sbjct: 124 ADGGTRTASITGAFIAMVMAIAKL-DAEVPFTKFPV-KDFLAATSVGVLEEGGTVLDLNY 181 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E TFS+ ++ L K IA+LI++QK+ + Sbjct: 182 IEDSAAQVDMNIIMTGSGAFVELQGTGEETTFSEAELAELIALGKKGIAELIEIQKETLG 241 Query: 240 NEV 242 EV Sbjct: 242 EEV 244 >gi|315924264|ref|ZP_07920488.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622425|gb|EFV02382.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 247 Score = 221 bits (562), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 119/237 (50%), Positives = 158/237 (66%), Gaps = 3/237 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N+ R + R +K+A GS L+ GDT ++ TA EE VP ++R GW+TA Sbjct: 10 RQDGRFYNEGRPTQVMRHFTKHAHGSVLMAVGDTKVICTAMCEETVPGFMRGEGRGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R KR +G+ GRS EIQR+IGR+LR+V+D+ LG R I IDCDVIQA Sbjct: 70 EYSMLPSATETR-KRRDRNGKTDGRSVEIQRLIGRSLRAVMDMETLGERTIRIDCDVIQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT AITGA++AL DC+ + D S + + + +G VAA S G+ G PI+DL Y E Sbjct: 129 DGGTRTTAITGAFIALWDCVASLLD-SGMIEKNPI-RGFVAATSVGVWQGTPILDLCYLE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS +VD N VMTD G I+E+QG+ E F++D F ++ L +D IA LI +QKDV+ Sbjct: 187 DSHAEVDMNLVMTDDGRIIEIQGTGEARPFTRDEFDRLMALGQDGIAHLIAVQKDVL 243 >gi|94968644|ref|YP_590692.1| ribonuclease PH [Candidatus Koribacter versatilis Ellin345] gi|94550694|gb|ABF40618.1| RNAse PH [Candidatus Koribacter versatilis Ellin345] Length = 245 Score = 221 bits (562), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 112/242 (46%), Positives = 159/242 (65%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R R +Q+R +S+ AEGSCL++ G+T ++ TA++EE VP ++RN+ GW+T Sbjct: 3 FRSDNRTPDQLRPVSIIPDYISTAEGSCLIEVGNTRVICTASIEESVPSFLRNSGKGWLT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +EY MLPR+T R RE GR GR+ EIQR+IGR+LR+V DL+ LG R + +DCDVIQ Sbjct: 63 SEYAMLPRATLTRTPREVSKGRASGRTHEIQRLIGRSLRAVTDLTKLGERTLFVDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ +Q + + + +S L+ +VAA S G++ G ++DL Y Sbjct: 123 ADGGTRTASITGAFVAVGLAVQKLTE-AGTLSISP-LRDYVAATSVGIVDGAVLLDLAYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N VMT S +VE+QG+AE+ F + M++LAK I LI QK + Sbjct: 181 EDSRAEVDMNIVMTGSRKMVEIQGTAEQHPFDDEQLAKMMSLAKAGIEQLIVKQKAALGT 240 Query: 241 EV 242 V Sbjct: 241 TV 242 >gi|116872609|ref|YP_849390.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463713|sp|A0AHX9|RNPH_LISW6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|116741487|emb|CAK20611.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334] Length = 248 Score = 221 bits (562), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 113/245 (46%), Positives = 167/245 (68%), Gaps = 7/245 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGREKNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGML-CGYPIVDL 177 ADGGTRTA+ITGA++A+ + +++ KF +K +AA S G+L G ++DL Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEQVPFTKFP----VKDFLAATSVGVLEEGGTVLDL 176 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +Y EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK++ Sbjct: 177 NYIEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKEI 236 Query: 238 ISNEV 242 + +++ Sbjct: 237 LGDKI 241 >gi|218232088|ref|YP_002369288.1| ribonuclease PH [Bacillus cereus B4264] gi|226736886|sp|B7HEB3|RNPH_BACC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|218160045|gb|ACK60037.1| tRNA nucleotidyltransferase [Bacillus cereus B4264] Length = 245 Score = 221 bits (562), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKIELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|296393943|ref|YP_003658827.1| ribonuclease PH [Segniliparus rotundus DSM 44985] gi|296181090|gb|ADG97996.1| ribonuclease PH [Segniliparus rotundus DSM 44985] Length = 261 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR +++MR + +TR + GS LV+FG T + A++ E VP W + T GW+TA Sbjct: 4 RLDGRHDDEMRPVKITRGFTSNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPAATATRNDRESVKGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + S + Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAFVALSDAVTWLA-ASGRLADPQPISCGIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D+ +VD N V TD+G +VEVQG+AE ATF + +L+LA I L+ Q++ ++ Sbjct: 183 DARAEVDMNVVATDTGALVEVQGTAEGATFHRKTLDKLLDLAFSGIERLVAAQQEALA 240 >gi|323489951|ref|ZP_08095172.1| ribonuclease PH [Planococcus donghaensis MPA1U2] gi|323396247|gb|EGA89072.1| ribonuclease PH [Planococcus donghaensis MPA1U2] Length = 249 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 113/238 (47%), Positives = 161/238 (67%), Gaps = 7/238 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ RQ N++R +++ + EGS L+ G T ++ TAT+E+KVP ++R GWITA Sbjct: 3 RIDNRQTNELRPVTVDVEYLIHPEGSVLITVGQTKVICTATIEDKVPGFLRGQGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R +REA +G+ GGR+ EIQR+IGRALR+VVDL LG R + IDCDVIQA Sbjct: 63 EYSMLPRATNSRNRREASAGKIGGRTMEIQRLIGRALRAVVDLEKLGERTLWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYG 180 DGGTRTA+ITGA++A+ + +E F ++ L AA S G+ PI+DL+Y Sbjct: 123 DGGTRTASITGAFIAMTMAIGKLE--LPDFPVTDFL----AATSVGVTAENGPILDLNYV 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ +VD N VMT +GH VE+QG+ E +TF++ +L+L + I LI +Q+D + Sbjct: 177 EDSSAEVDMNLVMTGAGHFVELQGTGEESTFTRAQLNELLDLGEAGIRQLIAMQQDAL 234 >gi|319441882|ref|ZP_07991038.1| ribonuclease PH [Corynebacterium variabile DSM 44702] Length = 256 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 110/234 (47%), Positives = 154/234 (65%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TR + GS LV+FG+T ++ TA++ E VP + R++ GW+TA Sbjct: 8 RFDGRAVDELRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVSEGVPRFKRDSGEGWLTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ REA+ G+ GR+ EI R+IGR+LR+ VDL ALG + IDCDV+QA Sbjct: 68 EYAMLPSATAERMPREALKGKVKGRTHEISRLIGRSLRAAVDLRALGENTVNIDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L ++ + L VAA+S G++ G P +DL Y E Sbjct: 128 DGGTRTASITGAYVALADALAVLQ--QRGVVPGEPLLDPVAAVSVGVIDGVPCLDLPYPE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS DVD N VMT G VE+QG+ E A FS+ +L+LA+ + DL+ LQ+ Sbjct: 186 DSRADVDMNVVMTAEGRFVEIQGTGEHAEFSRSELNELLDLAEGGLYDLVDLQR 239 >gi|59801347|ref|YP_208059.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090] gi|194098405|ref|YP_002001463.1| ribonuclease PH [Neisseria gonorrhoeae NCCP11945] gi|239998810|ref|ZP_04718734.1| putative ribonuclease PH [Neisseria gonorrhoeae 35/02] gi|240014274|ref|ZP_04721187.1| putative ribonuclease PH [Neisseria gonorrhoeae DGI18] gi|240016710|ref|ZP_04723250.1| putative ribonuclease PH [Neisseria gonorrhoeae FA6140] gi|240080902|ref|ZP_04725445.1| putative ribonuclease PH [Neisseria gonorrhoeae FA19] gi|240112738|ref|ZP_04727228.1| putative ribonuclease PH [Neisseria gonorrhoeae MS11] gi|240115487|ref|ZP_04729549.1| putative ribonuclease PH [Neisseria gonorrhoeae PID18] gi|240117781|ref|ZP_04731843.1| putative ribonuclease PH [Neisseria gonorrhoeae PID1] gi|240121837|ref|ZP_04734799.1| putative ribonuclease PH [Neisseria gonorrhoeae PID24-1] gi|240123337|ref|ZP_04736293.1| putative ribonuclease PH [Neisseria gonorrhoeae PID332] gi|240125585|ref|ZP_04738471.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-92-679] gi|240128040|ref|ZP_04740701.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-93-1035] gi|254493595|ref|ZP_05106766.1| ribonuclease PH [Neisseria gonorrhoeae 1291] gi|260440703|ref|ZP_05794519.1| ribonuclease PH [Neisseria gonorrhoeae DGI2] gi|268594653|ref|ZP_06128820.1| ribonuclease PH [Neisseria gonorrhoeae 35/02] gi|268597020|ref|ZP_06131187.1| ribonuclease PH [Neisseria gonorrhoeae FA19] gi|268598803|ref|ZP_06132970.1| ribonuclease PH [Neisseria gonorrhoeae MS11] gi|268601161|ref|ZP_06135328.1| ribonuclease PH [Neisseria gonorrhoeae PID18] gi|268603481|ref|ZP_06137648.1| ribonuclease PH [Neisseria gonorrhoeae PID1] gi|268681961|ref|ZP_06148823.1| ribonuclease PH [Neisseria gonorrhoeae PID332] gi|268684174|ref|ZP_06151036.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679] gi|268686430|ref|ZP_06153292.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035] gi|291044013|ref|ZP_06569729.1| ribonuclease PH [Neisseria gonorrhoeae DGI2] gi|293399206|ref|ZP_06643371.1| ribonuclease PH [Neisseria gonorrhoeae F62] gi|75432481|sp|Q5F840|RNPH_NEIG1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736920|sp|B4RL28|RNPH_NEIG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|59718242|gb|AAW89647.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090] gi|193933695|gb|ACF29519.1| putative ribonuclease PH [Neisseria gonorrhoeae NCCP11945] gi|226512635|gb|EEH61980.1| ribonuclease PH [Neisseria gonorrhoeae 1291] gi|268548042|gb|EEZ43460.1| ribonuclease PH [Neisseria gonorrhoeae 35/02] gi|268550808|gb|EEZ45827.1| ribonuclease PH [Neisseria gonorrhoeae FA19] gi|268582934|gb|EEZ47610.1| ribonuclease PH [Neisseria gonorrhoeae MS11] gi|268585292|gb|EEZ49968.1| ribonuclease PH [Neisseria gonorrhoeae PID18] gi|268587612|gb|EEZ52288.1| ribonuclease PH [Neisseria gonorrhoeae PID1] gi|268622245|gb|EEZ54645.1| ribonuclease PH [Neisseria gonorrhoeae PID332] gi|268624458|gb|EEZ56858.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679] gi|268626714|gb|EEZ59114.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035] gi|291012476|gb|EFE04465.1| ribonuclease PH [Neisseria gonorrhoeae DGI2] gi|291610620|gb|EFF39730.1| ribonuclease PH [Neisseria gonorrhoeae F62] gi|317164098|gb|ADV07639.1| ribonuclease PH [Neisseria gonorrhoeae TCDC-NG08107] Length = 242 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 113/236 (47%), Positives = 164/236 (69%), Gaps = 2/236 (0%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R+I +T + +GSCL++ G+T ++ TA+++E P ++ GW+TAEY Sbjct: 7 TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENAPPFLHGKNQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTALRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA+VAL + + S+ + VAA+S G++ G P++DLDY EDS Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILSENPILEAVAAVSAGVVNGVPLLDLDYPEDS 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLVALAQKGIGELLRYQQNALS 240 >gi|262201910|ref|YP_003273118.1| ribonuclease PH [Gordonia bronchialis DSM 43247] gi|262085257|gb|ACY21225.1| ribonuclease PH [Gordonia bronchialis DSM 43247] Length = 251 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R IS TR + + GS LV+FG T ++ TA++ + VP W R + GW+TA Sbjct: 4 RADGRADDELRPISFTRGFTSHPAGSVLVEFGQTRVMCTASVNDGVPPWRRGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+ EI R++GR+LR+ +DL ALG I +DCDV+QA Sbjct: 64 EYAMLPAATHERSSRESVKGRVGGRTHEISRLVGRSLRACIDLGALGENTIALDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + K Q L +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTWLR-AAGKLSDPQPLSCAIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+ E ATF++ A+L++A L + Q++V++ Sbjct: 183 DSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDALLDVAAVGTEKLFEAQREVLA 240 >gi|254828598|ref|ZP_05233285.1| ribonuclease PH [Listeria monocytogenes FSL N3-165] gi|254830008|ref|ZP_05234663.1| ribonuclease PH [Listeria monocytogenes 10403S] gi|255025220|ref|ZP_05297206.1| ribonuclease PH [Listeria monocytogenes FSL J2-003] gi|258600996|gb|EEW14321.1| ribonuclease PH [Listeria monocytogenes FSL N3-165] Length = 248 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238 Query: 240 NEV 242 ++V Sbjct: 239 DKV 241 >gi|308177068|ref|YP_003916474.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117] gi|307744531|emb|CBT75503.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117] Length = 244 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 160/240 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR Q+R+I++TR S AEGS L++FG+T +L TA+ E VP W++ GW+T Sbjct: 3 LRADGRGAAQLRDITITRGWSAQAEGSALIEFGNTRVLCTASFTEGVPRWLKGQGTGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GR+ EI R+IGR+LR+VVD ALG I++DCDV+Q Sbjct: 63 AEYAMLPRATNTRNSRESVKGKLSGRTHEISRLIGRSLRAVVDTKALGENTIVLDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL + + Q ++VL VAAIS G++ G P++DL Y Sbjct: 123 ADGGTRTAAITGAYVALAEAIAWATSQGIVKQNAKVLTDSVAAISVGIIDGTPMLDLPYE 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N V+T SG VEVQG+AE F + A+L+LA ++L ++Q++ + + Sbjct: 183 EDVRAETDMNVVVTGSGDFVEVQGTAEGVPFKRAELDALLDLALGGTSELAEIQRETLGS 242 >gi|323359606|ref|YP_004226002.1| RNase PH [Microbacterium testaceum StLB037] gi|323275977|dbj|BAJ76122.1| RNase PH [Microbacterium testaceum StLB037] Length = 241 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 113/233 (48%), Positives = 153/233 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +++ R S +AEGS L+ FG T +L TA+ VP W+ GW+TA Sbjct: 3 RKDGRTTDQLRPVTIERGWSAHAEGSALITFGGTKVLCTASFTNGVPRWLTGKGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R RE++ G+ GGR+ EI R+IGRALR+VVD ALG I+IDCDV+QA Sbjct: 63 EYAMLPRATNSRNDRESIKGKVGGRTHEISRLIGRALRAVVDTKALGENTIVIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q S+VL V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIAWGREKKFIAQRSEVLIDSVSAVSVGIIDGEPMLDLAYVE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + D N V+T G VEVQG+AE A F + +L+LA + A+L +Q Sbjct: 183 DVRAETDMNVVVTGRGLFVEVQGTAEGAPFDKAELDRLLDLAVNGCAELRGIQ 235 >gi|229163445|ref|ZP_04291396.1| Ribonuclease PH [Bacillus cereus R309803] gi|228620014|gb|EEK76889.1| Ribonuclease PH [Bacillus cereus R309803] Length = 245 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 IEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|224499091|ref|ZP_03667440.1| ribonuclease PH [Listeria monocytogenes Finland 1988] Length = 248 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLDEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238 Query: 240 NEV 242 ++V Sbjct: 239 DKV 241 >gi|254520650|ref|ZP_05132706.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA] gi|226914399|gb|EEH99600.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA] Length = 248 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R +TR +KYAEGS L++ GDT ++ TA++E+KVP +++ GWIT Sbjct: 1 MRIDGRKNEQVRIAKITRGYTKYAEGSVLIEVGDTKVICTASIEDKVPPFLKGQGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRSTG R R+ + GR+ EIQR+IGRALRSV+DL ALG + I IDCDVIQ Sbjct: 61 AEYNMLPRSTGTRKVRDIARLKVDGRTMEIQRLIGRALRSVMDLKALGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA+VAL D + + F++ + K V+A S G+L I+DL Y Sbjct: 121 ADGGTRTTSITGAFVALVDAVNKLHK-EKPFEVYPIRK-FVSATSVGILNDEKILDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N + TD G +E+QG+ E + FS+D +L+LA+ I ++++QKD + Sbjct: 179 EDSNAKVDMNVIATDEGEFIEIQGTGEESPFSRDDLNDLLDLAQKGIKQMVQIQKDAL 236 >gi|229175161|ref|ZP_04302677.1| Ribonuclease PH [Bacillus cereus MM3] gi|228608297|gb|EEK65603.1| Ribonuclease PH [Bacillus cereus MM3] Length = 245 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGRERTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 VEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|322436088|ref|YP_004218300.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9] gi|321163815|gb|ADW69520.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9] Length = 245 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 153/239 (64%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R R NQ+R +T EGS L++ G+T +L AT+E VP W+RN+ GW+T Sbjct: 6 FRPDNRTANQLRPTRITPGYVSTPEGSVLIEVGNTRVLCNATIETGVPGWMRNSGKGWVT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GGR+ EIQR+IGR+LR +VD+ ALG R II+DCDV+Q Sbjct: 66 AEYGMLPRATLTRSPREAEKGKIGGRTHEIQRLIGRSLRGIVDMRALGERTIILDCDVLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL L + + LK +AA S G++ G ++DL Y Sbjct: 126 ADGGTRTAAITGASVALAIALGKLVQAGTLK--ASPLKQMIAATSVGIVDGNTLLDLAYE 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VM SG +VE Q +AE+ ++S+ ML+LA+ I DL+ LQ+ ++ Sbjct: 184 EDSRATVDMNVVMLASGGLVETQATAEKDSYSRQQLTEMLDLAEAGIRDLLILQQTALT 242 >gi|229087047|ref|ZP_04219199.1| Ribonuclease PH [Bacillus cereus Rock3-44] gi|228696240|gb|EEL49073.1| Ribonuclease PH [Bacillus cereus Rock3-44] Length = 245 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ ++R I L K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREAAELRHIHLHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ +V DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEDQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEHGILQLVEKQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|16803278|ref|NP_464763.1| ribonuclease PH [Listeria monocytogenes EGD-e] gi|46907457|ref|YP_013846.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365] gi|47093490|ref|ZP_00231252.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858] gi|217964696|ref|YP_002350374.1| ribonuclease PH [Listeria monocytogenes HCC23] gi|224503807|ref|ZP_03672114.1| ribonuclease PH [Listeria monocytogenes FSL R2-561] gi|226223838|ref|YP_002757945.1| ribonuclease PH [Listeria monocytogenes Clip81459] gi|254823508|ref|ZP_05228509.1| ribonuclease PH [Listeria monocytogenes FSL J1-194] gi|254932884|ref|ZP_05266243.1| ribonuclease PH [Listeria monocytogenes HPB2262] gi|284801558|ref|YP_003413423.1| ribonuclease PH [Listeria monocytogenes 08-5578] gi|284994700|ref|YP_003416468.1| ribonuclease PH [Listeria monocytogenes 08-5923] gi|290893280|ref|ZP_06556266.1| ribonuclease PH [Listeria monocytogenes FSL J2-071] gi|21759401|sp|Q8Y7N6|RNPH_LISMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215964|sp|Q720J1|RNPH_LISMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808591|sp|B8DHZ4|RNPH_LISMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|259494123|sp|C1L2E3|RNPH_LISMC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|16410654|emb|CAC99316.1| lmo1238 [Listeria monocytogenes EGD-e] gi|46880725|gb|AAT04023.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365] gi|47018108|gb|EAL08879.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858] gi|217333966|gb|ACK39760.1| ribonuclease PH [Listeria monocytogenes HCC23] gi|225876300|emb|CAS05009.1| Putative ribonuclease PH [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|284057120|gb|ADB68061.1| ribonuclease PH [Listeria monocytogenes 08-5578] gi|284060167|gb|ADB71106.1| ribonuclease PH [Listeria monocytogenes 08-5923] gi|290557088|gb|EFD90616.1| ribonuclease PH [Listeria monocytogenes FSL J2-071] gi|293584438|gb|EFF96470.1| ribonuclease PH [Listeria monocytogenes HPB2262] gi|293592728|gb|EFG00489.1| ribonuclease PH [Listeria monocytogenes FSL J1-194] gi|307570743|emb|CAR83922.1| ribonuclease PH [Listeria monocytogenes L99] gi|313609161|gb|EFR84844.1| ribonuclease PH [Listeria monocytogenes FSL F2-208] gi|328475256|gb|EGF46037.1| ribonuclease PH [Listeria monocytogenes 220] gi|332311624|gb|EGJ24719.1| Ribonuclease PH [Listeria monocytogenes str. Scott A] Length = 248 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238 Query: 240 NEV 242 ++V Sbjct: 239 DKV 241 >gi|291286002|ref|YP_003502818.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809] gi|290883162|gb|ADD66862.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809] Length = 236 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/233 (46%), Positives = 152/233 (65%), Gaps = 2/233 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R+ + +R++ + + + EGS LV FGDT ++ A++ E VP ++R++ GW+TAEY M Sbjct: 5 RKNDSLRKVEIIKDYISHPEGSVLVAFGDTKVICNASVSEGVPPFLRDSGTGWVTAEYAM 64 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T R +RE+ G+Q GRSQEI R+IGR+LR+ VD LG + IDCDVIQADGGT Sbjct: 65 LPRATHTRNQRESKRGKQDGRSQEISRLIGRSLRAAVDFEKLGENTVTIDCDVIQADGGT 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTAAITG + AL+ + M + G V+AIS G++ G P++DL+Y EDS Sbjct: 125 RTAAITGGFCALYMACEWM--IKQGMIAENPVTGMVSAISVGIVMGEPMLDLEYAEDSIA 182 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DVD N V+ D+ IVE+QGSAE+ F +D ML+L I +L +QK VI Sbjct: 183 DVDMNLVVKDNAEIVEIQGSAEKVAFDRDLLNKMLDLGFKGIKELTDIQKQVI 235 >gi|56964417|ref|YP_176148.1| ribonuclease PH [Bacillus clausii KSM-K16] gi|61215808|sp|Q5WEM3|RNPH_BACSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56910660|dbj|BAD65187.1| ribonuclease PH [Bacillus clausii KSM-K16] Length = 250 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 156/239 (65%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR++NQ+RE+ + +K+AEGS L+ GDT ++ TA++E +VP ++R GW+ Sbjct: 1 MRQDGRKQNQLREVEIIPHFTKHAEGSVLISVGDTKVICTASIENRVPPFLRGQNKGWLA 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+TG R REA G+ GR+ EIQR+IGRALR+VVDL LG + I IDCDVIQ Sbjct: 61 AEYSMLPRATGQRTIREAAKGKLSGRTMEIQRLIGRALRAVVDLEKLGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VAL +Q + K + + +AAIS G+L + DL Y Sbjct: 121 ADGGTRTASITGAYVALVLAVQKA--FAEKTISAWPITDFLAAISVGILPEEGAVCDLCY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N V T SG VEVQGS E A +++ +L+LA + I LI +Q+ + Sbjct: 179 SEDSQAKVDMNIVQTGSGDFVEVQGSGEEAVYTRSELNELLDLAAEGIDQLIHIQRPFL 237 >gi|119715559|ref|YP_922524.1| ribonuclease PH [Nocardioides sp. JS614] gi|166228299|sp|A1SGA2|RNPH_NOCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|119536220|gb|ABL80837.1| RNAse PH [Nocardioides sp. JS614] Length = 242 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 118/238 (49%), Positives = 158/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R I++TR +A GS LV+FG T +L A+ E VP W + + GW+TA Sbjct: 6 REDGRADDELRPITITRHWLDHAAGSVLVEFGRTRVLCAASAAEGVPRWRKGSGLGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+V GR GGR+ EI R+IGR+LR+++D ALG I +DCDV+QA Sbjct: 66 EYAMLPASTNTRSDRESVKGRIGGRTHEISRLIGRSLRAIIDYKALGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++H+ S + L G VAA+S G++ G P +DL Y E Sbjct: 126 DGGTRTAAITGAYVALADAVEHLR--STGALTGEPLTGSVAAVSVGIIDGVPRLDLPYVE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N VMT SG VEVQG+AE A F + A+L LA+ ADL +LQ++ +S Sbjct: 184 DVRAETDMNVVMTGSGKFVEVQGTAEGAAFDRAELDALLALAEKGCADLTRLQQEALS 241 >gi|319651759|ref|ZP_08005885.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2] gi|317396578|gb|EFV77290.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2] Length = 256 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 115/243 (47%), Positives = 158/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ Q+R I + K+ EGS L+ GDT ++ TA+++E+VP ++R GWIT Sbjct: 1 MRADGREPKQLRPIHIESDYLKHPEGSVLITVGDTKVICTASIDERVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYSMLPRATEQRNIRESAKGKISGRTMEIQRLIGRALRAVVDLDALGERTVWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + S+K + +AA S G+L VDL+Y Sbjct: 121 ADGGTRTASITGAFVAMSQAMDKL--YSSKKLAHYPINDFLAATSVGILKNKQAAVDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N VMT SG VE+QG+ E ATFS ML A++ I++L + QK + Sbjct: 179 IEDSSAEVDMNVVMTGSGEFVELQGTGEEATFSYTQLQEMLGAAQEGISELFEFQKAALG 238 Query: 240 NEV 242 ++ Sbjct: 239 EKI 241 >gi|306819763|ref|ZP_07453420.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552198|gb|EFM40132.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 459 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 107/237 (45%), Positives = 159/237 (67%), Gaps = 2/237 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R N+MR I +T+ + YA+GS L++FG+T ++ TA++EEKVP +++N+ GWI+AEY M Sbjct: 15 RANNEMRRIRITKNYAGYADGSVLIEFGNTKVICTASVEEKVPPFLKNSGTGWISAEYSM 74 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R R++ G+ GRSQEIQR+IGR+LR+ VD + LG R I IDCDVIQADGGT Sbjct: 75 LPGSTKQRKVRDSTRGKIDGRSQEIQRLIGRSLRNAVDFTKLGERTIWIDCDVIQADGGT 134 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RT +I GA++A+ ++ + D K + ++AIS G++ G ++DL Y +DS Sbjct: 135 RTTSINGAFIAMALAVKKLYD--RKIISHFPIDSFISAISVGIVRGENVLDLCYEQDSNA 192 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 VD N VMT G VE+QG+ E+ FS+D +L LA+ ++ LQK+++ +E+ Sbjct: 193 QVDMNIVMTSKGEFVEIQGTGEQTPFSRDSLNDLLTLAEKANEKIVNLQKEILGDEI 249 >gi|270308459|ref|YP_003330517.1| ribonuclease PH [Dehalococcoides sp. VS] gi|270154351|gb|ACZ62189.1| ribonuclease PH [Dehalococcoides sp. VS] Length = 239 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 110/236 (46%), Positives = 153/236 (64%), Gaps = 2/236 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R I++T +AEGS L++ G T ++ + ++E+KVP ++RN+ GW+TA Sbjct: 3 RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R +R++ +G+ GRSQEIQR+IGR+LRS VDL+ALG R IIDCDVIQA Sbjct: 63 EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLTALGERSFIIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGA++AL+ + M D ++ VAA+S + G ++D Y E Sbjct: 123 DAGTRTASITGAYIALYLAFKKMVDMGILSKMP--FTSQVAAVSVSIFKGNIVLDPCYDE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D +VD N VM D VE+QG+AE TFS+D +L L + I L +Q + Sbjct: 181 DFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGESGIKQLFDIQNSI 236 >gi|297571668|ref|YP_003697442.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595] gi|296932015|gb|ADH92823.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595] Length = 246 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 112/243 (46%), Positives = 155/243 (63%), Gaps = 10/243 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R + +TR EGS LV+FG+T +L A+ E VP W +++ GW+T Sbjct: 6 RADGRATNELRPVKITRNFLDAGEGSVLVEFGNTKVLCVASFTEGVPRWRKDSGLGWVTG 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+V G+ GR+QEI R++GRALR+VVD+SALG I++DCDV+QA Sbjct: 66 EYSMLPRATSTRNQRESVKGKVSGRTQEISRLVGRALRAVVDMSALGDNTIVLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQ------HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 DGGTRTA+ITGA+VAL D + H++ + K VL+ VAAIS G++ G P + Sbjct: 126 DGGTRTASITGAYVALADAVAWGIERGHIKPRAGK----PVLRDSVAAISVGIIDGVPCL 181 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DL Y ED + D N VMT +G +EVQG+AE F + +L+LA +L Q Sbjct: 182 DLPYEEDVRAETDMNVVMTGTGKFIEVQGTAEGEPFDRTELGQLLDLATAGCQELTSKQN 241 Query: 236 DVI 238 D + Sbjct: 242 DAL 244 >gi|220928777|ref|YP_002505686.1| ribonuclease PH [Clostridium cellulolyticum H10] gi|254808583|sp|B8I1A8|RNPH_CLOCE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|219999105|gb|ACL75706.1| ribonuclease PH [Clostridium cellulolyticum H10] Length = 240 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 110/239 (46%), Positives = 163/239 (68%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR Q+R + + R K+AEGS L++ GDT ++ TA++EE++P + +++ GW+T Sbjct: 2 LRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +R+ + GRS EIQR+IGR+LR++VDL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITG++VAL D + + K +S++ + G VAA S G++ G ++DL Y Sbjct: 122 ADGGTRTASITGSYVALVDACRTL---VKKGLISKMPVTGTVAATSVGIVNGEELLDLCY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N + TD G +E+Q + E+++FS+ +LNLA+ I +LIK Q +V+ Sbjct: 179 IEDSNAEVDMNVIKTDKGEFIEIQATGEKSSFSKKQLDQLLNLAESGIHELIKAQNEVL 237 >gi|289549062|ref|YP_003474050.1| ribonuclease PH [Thermocrinis albus DSM 14484] gi|289182679|gb|ADC89923.1| ribonuclease PH [Thermocrinis albus DSM 14484] Length = 255 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 114/235 (48%), Positives = 157/235 (66%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ N++R+I +TR K+ EGS LV+FGDT ++ T +++E VP +++ GWIT Sbjct: 1 MRSDGRKPNELRKIRITRDYLKHPEGSVLVEFGDTKVVCTVSVQESVPPFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ +DL+ +G R IDCDV+Q Sbjct: 61 AEYSMLPRATQTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERTFWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + + +K VAA+S G++ ++DL++ Sbjct: 121 ADGGTRTAAITGAFVALADAVIKL--YTEGVLTTTPIKDFVAAVSVGIVDDQILLDLNFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD N V T SG I E+ E TFS++ MLNLA I L++LQ+ Sbjct: 179 EDSRAKVDMNVVATGSGMISEIHAMGEEHTFSREDMDKMLNLALAGIRQLVELQR 233 >gi|308235684|ref|ZP_07666421.1| ribonuclease PH [Gardnerella vaginalis ATCC 14018] gi|311114281|ref|YP_003985502.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945775|gb|ADP38479.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019] Length = 254 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 110/239 (46%), Positives = 153/239 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +++R + +TR + EGS L++ G+T ++ TAT VP W R+T GW+T Sbjct: 14 IRFDGRDVDELRPVKITRNFTNVPEGSVLIECGNTRVMCTATFTIGVPRWRRDTGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ A+G I IDCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVKGKIGGRTHEISRLIGRCLRGVIDMKAMGECLIQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D L E + VLK V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVALVDALNWAEKHKHIRSAKNVLKDSVSAVSVGVINGTPMLDLPYV 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG+ +E+QG+AE F++D +L+LA +L Q+ +S Sbjct: 194 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFNRDELNVLLDLAAKGNRELQAAQRAALS 252 >gi|315282015|ref|ZP_07870521.1| ribonuclease PH [Listeria marthii FSL S4-120] gi|313614342|gb|EFR87980.1| ribonuclease PH [Listeria marthii FSL S4-120] Length = 248 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 163/245 (66%), Gaps = 7/245 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRFDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGML-CGYPIVDL 177 ADGGTRTA+ITGA++A+ + +++ + KF +K +AA S G+L G ++DL Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEETPFTKFP----VKDFLAATSVGVLEEGGTVLDL 176 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +Y EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ Sbjct: 177 NYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQKET 236 Query: 238 ISNEV 242 + +V Sbjct: 237 LGEKV 241 >gi|254852893|ref|ZP_05242241.1| ribonuclease PH [Listeria monocytogenes FSL R2-503] gi|254993151|ref|ZP_05275341.1| ribonuclease PH [Listeria monocytogenes FSL J2-064] gi|300764387|ref|ZP_07074381.1| ribonuclease PH [Listeria monocytogenes FSL N1-017] gi|258606228|gb|EEW18836.1| ribonuclease PH [Listeria monocytogenes FSL R2-503] gi|300515039|gb|EFK42092.1| ribonuclease PH [Listeria monocytogenes FSL N1-017] Length = 248 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIVLGKKGISELIEIQKETLG 238 Query: 240 NEV 242 ++V Sbjct: 239 DKV 241 >gi|310778905|ref|YP_003967238.1| ribonuclease PH [Ilyobacter polytropus DSM 2926] gi|309748228|gb|ADO82890.1| ribonuclease PH [Ilyobacter polytropus DSM 2926] Length = 245 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 107/238 (44%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R+ +Q+R+I + + YAEGS L++ G+T ++ TA++ ++VP ++RN GW+T Sbjct: 5 LRDDNRKLDQIRDIKIKPNFTIYAEGSVLIEMGNTKVICTASISDRVPPFLRNQGRGWLT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R REAV G+ GR+ EIQR+IGR+LR+ +DL +G + I +DCDVIQ Sbjct: 65 AEYSMLPRATEDRNMREAVKGKLSGRTMEIQRLIGRSLRACIDLEKIGEKTITVDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++AL ++ + + L +VAAIS G++ G P++DL Y Sbjct: 125 ADGGTRTASITGGYMALALAVKKLLKKDKLKE--NPLIANVAAISAGIVGGQPMLDLKYT 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST +VD N +M G VEVQG+ E AT+++ ML+LA+ I +L++LQ ++ Sbjct: 183 EDSTAEVDMNVIMNSKGEFVEVQGTGEEATYTRRELNEMLDLAEKGIMELVELQNKIV 240 >gi|294787314|ref|ZP_06752567.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305] gi|294484670|gb|EFG32305.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305] Length = 260 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 107/242 (44%), Positives = 157/242 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R + +TR ++ EGS L++ G+T +L TAT + VP W R++ GW+T Sbjct: 17 IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVT 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T +R RE+V G+ GGR+ EI R+IGR LR +VD+ ALG QI IDCDV+Q Sbjct: 77 AEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQ 136 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + + +VL V+A+S G++ G P++DL Y Sbjct: 137 ADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYV 196 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D N MT SG+ +E+QG+AE FS+ +L+LA+ +L +Q + + Sbjct: 197 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQ 256 Query: 241 EV 242 + Sbjct: 257 AI 258 >gi|25028957|ref|NP_739011.1| ribonuclease PH [Corynebacterium efficiens YS-314] gi|259508022|ref|ZP_05750922.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314] gi|61216064|sp|Q8FMU8|RNPH_COREF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|23494244|dbj|BAC19211.1| putative ribonuclease [Corynebacterium efficiens YS-314] gi|259164363|gb|EEW48917.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314] Length = 245 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/234 (46%), Positives = 156/234 (66%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++QMR + +TR + GS L++FG+T ++ TA++E VP + R++ GW+TA Sbjct: 9 RADGRAQDQMRTVKITRGFTTNPAGSVLIEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE+++G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA Sbjct: 69 EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ +++ L VAA+S G++ G P +DL Y E Sbjct: 129 DGGTRTAAITGAYVALADAIRVLKE--QGVVPGDPLLPPVAAVSVGLIDGQPCLDLPYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D DVD N VMT+SG VE+QG+ E TF++ ML++A+ +L+ QK Sbjct: 187 DVRADVDMNVVMTESGEFVEIQGTGEETTFTRAQLNEMLDIAEKGCRELVHAQK 240 >gi|315227127|ref|ZP_07868914.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105] gi|315119577|gb|EFT82710.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105] Length = 263 Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 107/242 (44%), Positives = 157/242 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R + +TR ++ EGS L++ G+T +L TAT + VP W R++ GW+T Sbjct: 20 IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T +R RE+V G+ GGR+ EI R+IGR LR +VD+ ALG QI IDCDV+Q Sbjct: 80 AEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + + +VL V+A+S G++ G P++DL Y Sbjct: 140 ADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYV 199 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D N MT SG+ +E+QG+AE FS+ +L+LA+ +L +Q + + Sbjct: 200 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQ 259 Query: 241 EV 242 + Sbjct: 260 AI 261 >gi|284043327|ref|YP_003393667.1| ribonuclease PH [Conexibacter woesei DSM 14684] gi|283947548|gb|ADB50292.1| ribonuclease PH [Conexibacter woesei DSM 14684] Length = 245 Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 112/229 (48%), Positives = 148/229 (64%), Gaps = 2/229 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +R +S + A GS L+ G+T ++ TA++EE VP W+ GW+TA Sbjct: 5 RSYGRTAEGLRPVSFEPGFVRSATGSALIAIGETRVICTASVEESVPRWMTGRGTGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLP STG R R+ GR GR+ EIQR+IGR+LR VVD SALG R + +DCDV+QA Sbjct: 65 EYGMLPASTGQRKARDVTKGRADGRTVEIQRLIGRSLRGVVDFSALGERTVYVDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITG +VAL + + ++ L G VAA+S G++ G P++DLDY E Sbjct: 125 DGGTRCASITGGFVALQLACERL--VADGLLERLPLTGSVAAVSAGIVDGVPLLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 DST +VDAN VMT G +VEVQ +AER S+ H +L LA+ IA+L Sbjct: 183 DSTAEVDANVVMTGEGGLVEVQATAERTPLSRAHLDDLLALAERGIAEL 231 >gi|189184292|ref|YP_001938077.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda] gi|189181063|dbj|BAG40843.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda] Length = 251 Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 158/238 (66%), Gaps = 7/238 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59 MRL R++++MR IS+ ++GSCL+K G+TH++ +AT+EE +P++++N K G W+ Sbjct: 1 MRLCSRKDSEMRPISIELGTMLNSKGSCLIKIGNTHVICSATVEESLPLFLKNKKQGGWV 60 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP S+ RVKRE + G+ GR+QEIQR+I RA+R+ VDL LG RQI+IDCDVI Sbjct: 61 TAEYSMLPGSSLQRVKREGIQGK-SGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVI 119 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTR A+ITG +VA+ CL + K + VAAISCG+ G IVDLDY Sbjct: 120 NADGGTRAASITGGYVAM--CLAVNKLMQEKNLAVYPILYQVAAISCGISNGRVIVDLDY 177 Query: 180 GEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS +VDANFV +G IVE+Q +AE+ F + ML LA+ I + +Q Sbjct: 178 QEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQ 235 >gi|332978052|gb|EGK14790.1| tRNA nucleotidyltransferase [Desmospora sp. 8437] Length = 289 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 158/239 (66%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GRQ N++R++ + K+AEGS L+ GDT ++ TA++EE+VP ++R + GW+T Sbjct: 31 LRVDGRQYNELRKVEMISDYIKHAEGSVLMCVGDTKVICTASVEERVPPFLRGSGKGWVT 90 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+ G+ GGR+ EIQR+IGR+LRSV+ L LG R I +DCDVIQ Sbjct: 91 AEYSMLPRATQSRTIRESSKGKVGGRTMEIQRLIGRSLRSVIQLDRLGERTIWLDCDVIQ 150 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA Q + L V + +AA S G++ G P +DL Y Sbjct: 151 ADGGTRTASITGAFVA---AAQAIHGLVKSGALDSVPITDFLAATSVGIVDGQPCLDLCY 207 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT SG VE+QG+ E + F+ + +L LA LI+LQKDV+ Sbjct: 208 EEDSKAKVDMNVVMTGSGKYVEIQGTGEESPFTPEELHQLLALAGHGTEQLIRLQKDVL 266 >gi|110801547|ref|YP_699516.1| ribonuclease PH [Clostridium perfringens SM101] gi|123145921|sp|Q0SQU1|RNPH_CLOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110682048|gb|ABG85418.1| tRNA nucleotidyltransferase [Clostridium perfringens SM101] Length = 248 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 109/241 (45%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PRST +R +R+ + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q Sbjct: 61 AEYNMIPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG++VAL D + + F + + + V+A+S G++ ++DL Y Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQ-KKPFNVYPI-RHFVSAVSIGIVGEEKVLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED VD N VM + G +E+QG+ E FS+ +LNLA+ +I+ QK+ + Sbjct: 179 EDHVAKVDMNVVMIEEGEFIEIQGTGEIGPFSRKELDELLNLAEKGAKQMIQAQKNALKT 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|47097379|ref|ZP_00234931.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854] gi|254898601|ref|ZP_05258525.1| ribonuclease PH [Listeria monocytogenes J0161] gi|254911909|ref|ZP_05261921.1| ribonuclease PH [Listeria monocytogenes J2818] gi|254936235|ref|ZP_05267932.1| ribonuclease PH [Listeria monocytogenes F6900] gi|47014251|gb|EAL05232.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854] gi|258608825|gb|EEW21433.1| ribonuclease PH [Listeria monocytogenes F6900] gi|293589869|gb|EFF98203.1| ribonuclease PH [Listeria monocytogenes J2818] Length = 248 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I +LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGICELIEIQKETLG 238 Query: 240 NEV 242 ++V Sbjct: 239 DKV 241 >gi|257452055|ref|ZP_05617354.1| ribonuclease PH [Fusobacterium sp. 3_1_5R] gi|317058603|ref|ZP_07923088.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R] gi|313684279|gb|EFS21114.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R] Length = 249 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 116/237 (48%), Positives = 162/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ENQ+REI +TR + +AEGS L++ G+T ++ TA++ EKVP +I+NT GW+TA Sbjct: 3 RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+TG R +REA G+ GR+ EIQR+IGRALRS +DL LG R I +DCDVIQA Sbjct: 63 EYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ + S VL VAA+S G G +DL+Y E Sbjct: 123 DGGTRTASITGAFVAMAIAAAKLLR-EGTITDSPVLS-SVAAVSVGKCEGNIFLDLNYVE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS+ +VD N + D G +EVQG+ E ATF + +L++A+ I L++ Q++V+ Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNTLLDMAEIGIHQLLEKQREVL 237 >gi|297583709|ref|YP_003699489.1| ribonuclease PH [Bacillus selenitireducens MLS10] gi|297142166|gb|ADH98923.1| ribonuclease PH [Bacillus selenitireducens MLS10] Length = 261 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 115/234 (49%), Positives = 160/234 (68%), Gaps = 3/234 (1%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R +Q+R+I + K+ EGS L+ FGDT ++ +A++E++VP ++R GW+TAEY M Sbjct: 7 RLNHQLRDIDMIPGYIKHPEGSVLISFGDTKVICSASIEDRVPPFLRGQGKGWVTAEYAM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T +R RE+ G+ GR+ EIQR+IGRALRSVV+L LG R + +DCDVIQADGGT Sbjct: 67 LPRATESRNIRESSKGKVTGRTMEIQRLIGRALRSVVNLDLLGERTVWVDCDVIQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDST 184 RTA+ITGA+ A+ +++ + K + L +AAIS G+ G ++DLDY EDST Sbjct: 127 RTASITGAFTAVALAFENLME-EGKLE-ENPLTDFLAAISVGVASDGDILLDLDYSEDST 184 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DVD N VMT +G +VEVQG+ E ATFS+ ML++A++ I LI QK VI Sbjct: 185 ADVDMNIVMTGTGQLVEVQGTGEEATFSRAEMNKMLDVAEEGIGKLIDKQKAVI 238 >gi|299139261|ref|ZP_07032437.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8] gi|298598941|gb|EFI55103.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8] Length = 248 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 155/239 (64%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R GR +Q R + LT AEGS L++ G T +L AT+E VP W+RN+ GW+T Sbjct: 10 FRSGGRAASQARALRLTPGFVATAEGSVLIEVGHTRVLCNATVENGVPGWMRNSGRGWVT 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R RE+ G+ GGR+ EIQR+IGR+LRSVVD+ LG R II+DCDV+Q Sbjct: 70 AEYGMLPRATLTRTARESERGKIGGRTHEIQRLIGRSLRSVVDMRLLGERTIILDCDVLQ 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA AL L + + + LK VAA S G++ G ++DL Y Sbjct: 130 ADGGTRTAAITGACTALALALGKLVQAGSLKE--SPLKQMVAATSVGIVDGRVLLDLAYE 187 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT G +VE Q +AER T+++ ML++A I +L+K Q++ ++ Sbjct: 188 EDSRAEVDMNVVMTADGGLVETQATAERGTYTRAQLNEMLDVAAVGIEELLKAQRECLA 246 >gi|33592677|ref|NP_880321.1| ribonuclease PH [Bordetella pertussis Tohama I] gi|33601937|ref|NP_889497.1| ribonuclease PH [Bordetella bronchiseptica RB50] gi|61216026|sp|Q7VXY3|RNPH_BORPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61216032|sp|Q7WI90|RNPH_BORBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|33572323|emb|CAE41877.1| ribonuclease PH [Bordetella pertussis Tohama I] gi|33576375|emb|CAE33453.1| ribonuclease PH [Bordetella bronchiseptica RB50] gi|332382092|gb|AEE66939.1| ribonuclease PH [Bordetella pertussis CS] Length = 246 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 116/240 (48%), Positives = 157/240 (65%), Gaps = 8/240 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R SL R ++YAEGS LV+ G+TH+L TA++ EKVP +++ GW+TA Sbjct: 11 RPSGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R + +DCDV+QA Sbjct: 71 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQA 130 Query: 122 DGGTRTAAITG---AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 DGGTR A+ITG A L D ++ ++ VAA+S G++ G ++DLD Sbjct: 131 DGGTRCASITGAWVAAADAVALLMQRGDLAHN-----PIRDAVAAVSVGLVDGRAVLDLD 185 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS D N VMT SG VEVQG+ E ATF++ ML LA+ IA L++ Q++ + Sbjct: 186 YQEDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREAL 245 >gi|256375162|ref|YP_003098822.1| ribonuclease PH [Actinosynnema mirum DSM 43827] gi|255919465|gb|ACU34976.1| ribonuclease PH [Actinosynnema mirum DSM 43827] Length = 254 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 1/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR ++ +R+I +TR ++ GS L++FG+T +L A++ E VP W + GW+T Sbjct: 2 LRTDGRNDDVLRDIRITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRSGSGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T R RE++ GR GGR+ EI R+IGR+LR+ +DL+ALG I+IDCDVIQ Sbjct: 62 AEYAMLPSATHTRGDRESIKGRVGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + + Q L ++A+S G++ G +DL Y Sbjct: 122 ADGGTRTAAITGAYVALADAVTWL-GAAGRLADPQPLSCAISAVSVGVVDGRVRLDLPYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N V TD+G +VEVQG+ E ATF++ ML+LA A+L +LQ + ++ Sbjct: 181 EDSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDRMLDLALQGCAELNRLQTEALAQ 240 Query: 241 E 241 Sbjct: 241 P 241 >gi|86607255|ref|YP_476018.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab] gi|123504955|sp|Q2JRJ9|RNPH_SYNJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|86555797|gb|ABD00755.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab] Length = 242 Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 113/243 (46%), Positives = 159/243 (65%), Gaps = 11/243 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR Q+R IS R ++YA GS LVKFGDTH+L TA++ E+VP +++NT GW+TA Sbjct: 5 RPDGRTAAQLRPISFQRHFTRYAPGSVLVKFGDTHVLCTASVAEEVPPFLQNTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+ EIQR+IGR+LR+ +D LGSR I +D DV+QA Sbjct: 65 EYRMLPTATQQRQPRETL--KVSGRTAEIQRLIGRSLRAALDFHKLGSRTITVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCL-----QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 DG TRTAAITG +VALHD + Q + D + L Q VAA+S G++ G +VD Sbjct: 123 DGSTRTAAITGGYVALHDAITWLYKQGLLDPAQGSPLRQ----QVAALSVGIVRGEVLVD 178 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 L Y EDS +VD N VM + G ++E+QG+AE F + ML++A+ I +L++ Q++ Sbjct: 179 LCYEEDSQAEVDMNIVMNEQGALIEIQGTAEAGCFDRSQLLQMLDMAQAGIQELLRAQRE 238 Query: 237 VIS 239 ++ Sbjct: 239 TLN 241 >gi|302529720|ref|ZP_07282062.1| ribonuclease PH [Streptomyces sp. AA4] gi|302438615|gb|EFL10431.1| ribonuclease PH [Streptomyces sp. AA4] Length = 258 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++Q+RE+ LTR K+ GS LV+FG+T +L A++ E VP W + GW+TA Sbjct: 3 RKDGRNDDQLREVKLTRGFQKWPAGSVLVEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R REAV GR GGR+ EI R+IGR+LR+ +DL+ALG I+IDCDVIQA Sbjct: 63 EYAMLPSATNTRSDREAVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TG +VAL D + + +N+ Q L VAA+S G++ G +DL Y E Sbjct: 123 DGGTRTAAVTGGYVALADAITWL-GAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G ++EVQG+ E ATF++ ML+LA +L +LQK+ ++ Sbjct: 182 DSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDLALAGCEELTRLQKEALA 239 >gi|297242886|ref|ZP_06926824.1| ribonuclease PH [Gardnerella vaginalis AMD] gi|296889097|gb|EFH27831.1| ribonuclease PH [Gardnerella vaginalis AMD] Length = 253 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 105/223 (47%), Positives = 150/223 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +++R + +TR+ + EGS L++ G+T ++ TAT VP W R++ GW+T Sbjct: 14 IRVDGRNVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ A+G QI IDCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D L E + + V+K ++A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVIKDSISAVSVGVINGTPMLDLPYV 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 EDS D N MT SG +E+QG+AE F++D +L+LA Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLA 236 >gi|163845843|ref|YP_001633887.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl] gi|222523554|ref|YP_002568024.1| ribonuclease PH [Chloroflexus sp. Y-400-fl] gi|163667132|gb|ABY33498.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl] gi|222447433|gb|ACM51699.1| ribonuclease PH [Chloroflexus sp. Y-400-fl] Length = 250 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 113/225 (50%), Positives = 153/225 (68%), Gaps = 8/225 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR +Q+R IS+ + YAEGS L+ +G T +L TAT+E+ VP W+R + GW+T Sbjct: 2 MRIDGRSPDQLRPISIEIGAAPYAEGSALIAYGKTRVLCTATVEDGVPAWMRGQQSGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 AEY MLPR+T R +RE R G GR+QEIQR+IGR+LR+ +DL+ALG R I IDCDV Sbjct: 62 AEYAMLPRATLQRTRRE----RNGPSGRTQEIQRLIGRSLRAAIDLNALGERTITIDCDV 117 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTRTAAI+G +VAL + ++ S + L VAA+S GML G ++DL Sbjct: 118 LQADGGTRTAAISGGYVALALAVDYLVR-SGVLETRPTLT-PVAAVSVGMLQGVLLLDLC 175 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 Y EDS D+D N VM +G +EVQ +AER+ ++D A+L+LA Sbjct: 176 YEEDSQADLDCNVVMNSAGGYIEVQATAERSAVTRDQLNALLDLA 220 >gi|225351161|ref|ZP_03742184.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158617|gb|EEG71859.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 253 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 106/224 (47%), Positives = 152/224 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS LV+ G+T ++ TAT VP W +++ GW+T Sbjct: 13 IRTDGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVT 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q Sbjct: 73 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 132 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ E + +V+K V+A+S G++ G P++DL Y Sbjct: 133 ADGGTRTASITGAYVALVDAMRWAEKHKHIRSAERVIKDSVSAVSVGVIDGTPMLDLPYI 192 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS D N MT SG +E+QG+AE F++ A+L+LA+ Sbjct: 193 EDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNALLDLAE 236 >gi|120405241|ref|YP_955070.1| ribonuclease PH [Mycobacterium vanbaalenii PYR-1] gi|166228297|sp|A1TD14|RNPH_MYCVP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|119958059|gb|ABM15064.1| RNAse PH [Mycobacterium vanbaalenii PYR-1] Length = 260 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 109/234 (46%), Positives = 156/234 (66%), Gaps = 1/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R +++TR + + GS LV+FG T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVTITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPAATHERSGRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYLA-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYTE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N V TD+G +VE+QG+ E ATF + ML+ A L ++Q+ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQR 236 >gi|171910497|ref|ZP_02925967.1| ribonuclease PH [Verrucomicrobium spinosum DSM 4136] Length = 269 Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 154/239 (64%), Gaps = 4/239 (1%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWITAEY 63 R +Q+R +S ++ +A GS LV FG+T ++ AT++E+VP W++ GW+TAEY Sbjct: 7 RTPDQLRNVSFQLDIAPHATGSVLVSFGNTKVICAATIQEEVPRWMKAQGVSGGWLTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 MLP ST +R R+ G+ GRSQEIQR+IGR+LR+VVDL LG R + IDCDV+QADG Sbjct: 67 SMLPYSTLDRKDRDISKGKLDGRSQEIQRLIGRSLRAVVDLEKLGPRTLWIDCDVLQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+ITGA VA + + Q Q LK VAAIS G+ ++DL Y ED Sbjct: 127 GTRTASITGACVASAIAFNRLLEKGVLRQ--QPLKKKVAAISVGIFRNQALLDLCYEEDR 184 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 DVD N VMT+ G VE+QGS E +TFS+ AML L K I +L KLQ +VI++ V Sbjct: 185 DADVDCNLVMTEDGQFVEIQGSGEESTFSEAQLSAMLTLGKKGIVELCKLQAEVINSAV 243 >gi|33597539|ref|NP_885182.1| ribonuclease PH [Bordetella parapertussis 12822] gi|61216028|sp|Q7W6C1|RNPH_BORPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|33573967|emb|CAE38285.1| ribonuclease PH [Bordetella parapertussis] Length = 250 Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 158/241 (65%), Gaps = 8/241 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR + +R SL R ++YAEGS LV+ G+TH+L TA++ EKVP +++ GW+T Sbjct: 14 VRPAGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R + +DCDV+Q Sbjct: 74 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQ 133 Query: 121 ADGGTRTAAITG---AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ADGGTR A+ITG A L D ++ ++ VAA+S G++ G ++DL Sbjct: 134 ADGGTRCASITGAWVAAADAVALLMQRGDLAHN-----PIRDAVAAVSVGLVDGRAVLDL 188 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DY EDS D N VMT SG VEVQG+ E ATF++ ML LA+ IA L++ Q++ Sbjct: 189 DYQEDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREA 248 Query: 238 I 238 + Sbjct: 249 L 249 >gi|225165849|ref|ZP_03727626.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2] gi|224799908|gb|EEG18360.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2] Length = 254 Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 114/247 (46%), Positives = 158/247 (63%), Gaps = 12/247 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGWI 59 R GR+ +Q+R I+ ++ +A GS L FG+T ++ AT+E KVP+W++ K GW+ Sbjct: 6 RADGRRPDQLRPITFEANIAPHATGSVLASFGNTRVICAATIEPKVPLWMKQQKVPGGWL 65 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY +LP ST +R R+ G+ GR+ EIQR+IGRALR+V+DLS LG + IDCDV+ Sbjct: 66 TAEYSLLPYSTHDRKARDISKGKLDGRTVEIQRLIGRALRAVLDLSKLGENTLWIDCDVL 125 Query: 120 QADGGTRTAAITGAWVALHDCLQHMED----CSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 QADGGTRTA+ITGA++A LQ + D N F S +AAIS G+L G ++ Sbjct: 126 QADGGTRTASITGAYLATRLALQKLLDTGKLAENPFTDS------IAAISVGILGGRELL 179 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DL Y ED +VDAN VMT GH VEVQ S E ATF+ D A+L LA+ + ++ LQ Sbjct: 180 DLPYTEDKDAEVDANIVMTGRGHFVEVQTSGEEATFTYDQLQALLGLAQKGLKEIAALQT 239 Query: 236 DVISNEV 242 ++ ++ Sbjct: 240 AFLTRQL 246 >gi|89098915|ref|ZP_01171795.1| ribonuclease PH [Bacillus sp. NRRL B-14911] gi|89086319|gb|EAR65440.1| ribonuclease PH [Bacillus sp. NRRL B-14911] Length = 277 Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 160/245 (65%), Gaps = 7/245 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR++ Q+R I + + EGS L+ G+T ++ TA+++E+VP ++R GWIT Sbjct: 31 MRKDGREQLQLRPIHIETNYLMHPEGSVLISVGNTKVICTASIDERVPPFMRGEGKGWIT 90 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 91 AEYSMLPRATEQRNIREAAKGKITGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 150 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIV-DL 177 ADGGTRTA+ITGA+VA+ ++ + +KF ++Q L AA S G+L +V DL Sbjct: 151 ADGGTRTASITGAFVAMAIAVEKLYSNKKLSKFPITQFL----AATSVGILENKQVVLDL 206 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +Y EDS +VD N VMT +G VE+QG+ E ATFS +L A++ + L +QK V Sbjct: 207 NYAEDSKAEVDMNVVMTGNGEFVELQGTGEEATFSASQLTELLKAAEEGVGRLFDIQKQV 266 Query: 238 ISNEV 242 + ++ Sbjct: 267 LGEKI 271 >gi|283782839|ref|YP_003373593.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05] gi|283441100|gb|ADB13566.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05] Length = 253 Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 105/223 (47%), Positives = 150/223 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +++R + +TR+ + EGS L++ G+T ++ TAT VP W R++ GW+T Sbjct: 14 IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ A+G QI IDCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D L E + + V+K ++A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYV 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 EDS D N MT SG +E+QG+AE F++D +L+LA Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLA 236 >gi|126730097|ref|ZP_01745909.1| ribonuclease PH [Sagittula stellata E-37] gi|126709477|gb|EBA08531.1| ribonuclease PH [Sagittula stellata E-37] Length = 206 Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 103/207 (49%), Positives = 146/207 (70%), Gaps = 2/207 (0%) Query: 32 FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91 GDTH+L TA+LEE+VP +++ + GW+TAEYGMLPRST +R++REA G+QGGR+ EIQ Sbjct: 1 MGDTHVLCTASLEERVPPFVKGSGQGWVTAEYGMLPRSTSSRMRREAAMGKQGGRTVEIQ 60 Query: 92 RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151 R+IGRALR+ VD +ALG RQI +DCDVIQADGGTR A+ITG WVAL + + + Sbjct: 61 RLIGRALRAGVDRNALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKLMKAGDI- 119 Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211 ++ L VAA+SCG+ G ++DLDY EDS VD NF++ ++EVQ SAE + F Sbjct: 120 -VTDPLISEVAAVSCGIYAGQAVLDLDYPEDSEAGVDGNFILRGDNALIEVQMSAEGSVF 178 Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVI 238 S++ +++LA+ + +L+ Q+ + Sbjct: 179 SRNQMTQLMDLAEKGVVELVAAQRAAV 205 >gi|262193889|ref|YP_003265098.1| ribonuclease PH [Haliangium ochraceum DSM 14365] gi|262077236|gb|ACY13205.1| ribonuclease PH [Haliangium ochraceum DSM 14365] Length = 250 Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 110/229 (48%), Positives = 153/229 (66%), Gaps = 5/229 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ NQ+R + +T +YAEGS L+K G+T +L A++EE+VP ++ GW+TA Sbjct: 3 RPDGREANQLRPVEITTGFQQYAEGSALIKSGNTWVLCAASIEERVPPFLAGRGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R R + GGR +EIQR+IGR+LR+ V++ ALG R I IDCDV+QA Sbjct: 63 EYAMLPRSTHTRSGRHS-----GGRGKEIQRLIGRSLRAAVNMEALGERAITIDCDVLQA 117 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITG +VAL + + + VL+ +AAIS G++ G +DL Y E Sbjct: 118 DGGTRVASITGGYVALALAVDGLVRAGLVASVESVLREPIAAISVGIIDGEARLDLPYAE 177 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 DST +VD N VMT+SGH+VEVQG+ E+ TFS+ ++L+LA + + L Sbjct: 178 DSTAEVDMNVVMTESGHLVEVQGTGEQGTFSRAQLDSLLDLATEGVKRL 226 >gi|148284140|ref|YP_001248230.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong] gi|146739579|emb|CAM79326.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong] Length = 251 Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 157/238 (65%), Gaps = 7/238 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59 MRL R++++MR IS+ ++GSCL K G+TH++ +AT+EE +P++++N K G W+ Sbjct: 1 MRLCSRKDSEMRPISIELGAMLNSKGSCLTKIGNTHVICSATVEESLPLFLKNKKQGGWV 60 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP S+ RVKRE + G+ GR+QEIQR+I RA+R+ VDL LG RQI+IDCDVI Sbjct: 61 TAEYSMLPGSSLQRVKREGIQGK-SGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVI 119 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTR A+ITG +VA+ CL + K + VAAISCG+ G IVDLDY Sbjct: 120 NADGGTRAASITGGYVAM--CLAVNKLMQEKNLAVYPILYQVAAISCGISNGRVIVDLDY 177 Query: 180 GEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS +VDANFV +G IVE+Q +AE+ F + ML LA+ I + +Q Sbjct: 178 QEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQ 235 >gi|317129838|ref|YP_004096120.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522] gi|315474786|gb|ADU31389.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522] Length = 255 Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 7/241 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ + +R++ + K+ EGS L+ FG+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRKTDDIRKVDIIPHYIKHPEGSVLISFGETKVICAASIEDRVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL A+G R I IDCDVIQ Sbjct: 61 AEYSMLPRATEQRNIRESAKGKLSGRTMEIQRLIGRALRSVVDLDAIGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCG-YPIVDL 177 ADGGTRTA++TGA+VA+ L +++ KF + L AAIS G+ G I+DL Sbjct: 121 ADGGTRTASVTGAFVAMALALHKLKEAKQIKKFPIKHFL----AAISVGVNEGNIAILDL 176 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DY EDS +VD N +MT + VE+QG+ E ATFS+ ML+LA+ I +L QK+ Sbjct: 177 DYIEDSKANVDMNIIMTGNSEFVEIQGTGEEATFSRKQLNEMLDLAELGINELFLHQKEA 236 Query: 238 I 238 + Sbjct: 237 L 237 >gi|298253316|ref|ZP_06977108.1| ribonuclease PH [Gardnerella vaginalis 5-1] gi|297532711|gb|EFH71597.1| ribonuclease PH [Gardnerella vaginalis 5-1] Length = 247 Score = 218 bits (554), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 105/223 (47%), Positives = 150/223 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +++R + +TR+ + EGS L++ G+T ++ TAT VP W R++ GW+T Sbjct: 8 IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ A+G QI IDCDV+Q Sbjct: 68 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D L E + + V+K ++A+S G++ G P++DL Y Sbjct: 128 ADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYV 187 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 EDS D N MT SG +E+QG+AE F++D +L+LA Sbjct: 188 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLA 230 >gi|227495770|ref|ZP_03926081.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434] gi|226834699|gb|EEH67082.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434] Length = 263 Score = 218 bits (554), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 110/241 (45%), Positives = 156/241 (64%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TRR ++ EGS LV+FG T +L A+ E VP W + + GW+TA Sbjct: 9 RKDGRATDELRPVTITRRWQEHGEGSVLVEFGRTRVLCVASFTEGVPRWRKGSGEGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R RE+V G+ GGR+ EI R+IGRALR VVD++ALG I +DCDV+QA Sbjct: 69 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRALRGVVDVAALGENTIALDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTA++TGA+VAL D + + + V+ ++AIS G++ G P +DL Y Sbjct: 129 DGGTRTASVTGAYVALADAVAWGTERGLISPRAGKPVIADSLSAISVGIIDGVPCLDLPY 188 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D N V T +G +EVQG+AE A F++D A+L+LA +L +LQK V++ Sbjct: 189 EEDVRAHTDMNVVQTGAGKFIEVQGTAEHAPFNRDELCALLDLATKGNGELAELQKAVLA 248 Query: 240 N 240 Sbjct: 249 G 249 >gi|317482025|ref|ZP_07941050.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA] gi|322688513|ref|YP_004208247.1| ribonuclease PH [Bifidobacterium longum subsp. infantis 157F] gi|322690521|ref|YP_004220091.1| ribonuclease PH [Bifidobacterium longum subsp. longum JCM 1217] gi|316916592|gb|EFV37989.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA] gi|320455377|dbj|BAJ65999.1| putative ribonuclease PH [Bifidobacterium longum subsp. longum JCM 1217] gi|320459849|dbj|BAJ70469.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis 157F] Length = 254 Score = 218 bits (554), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 14 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 252 >gi|320457392|dbj|BAJ68013.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 254 Score = 218 bits (554), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 14 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 252 >gi|86609199|ref|YP_477961.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502063|sp|Q2JKT3|RNPH_SYNJB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|86557741|gb|ABD02698.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)] Length = 244 Score = 218 bits (554), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 113/242 (46%), Positives = 159/242 (65%), Gaps = 5/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R Q+R +S R ++YA GS LVKFG TH+L TA++ E+VP +++NT GW+TA Sbjct: 5 RPDNRTAAQLRPVSFERHFTRYAPGSVLVKFGHTHVLCTASVAEEVPPFLQNTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+ EIQR+IGR+LR+ +D LGSR I +D DV+QA Sbjct: 65 EYRMLPGATQQRQPREML--KLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTAAITG +VALHD + + + + Q S L+ VAA+S G++ G +VDL Y Sbjct: 123 DGGTRTAAITGGYVALHDAITWLYKQGALDPAQGSP-LRQQVAALSVGIVQGEVLVDLCY 181 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VM + G +E+QG+AE A FS+ ML +A+ I +L++ Q+ ++ Sbjct: 182 EEDSQAEVDMNIVMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQELLQAQRQALN 241 Query: 240 NE 241 E Sbjct: 242 LE 243 >gi|313672547|ref|YP_004050658.1| rnase ph [Calditerrivibrio nitroreducens DSM 19672] gi|312939303|gb|ADR18495.1| RNAse PH [Calditerrivibrio nitroreducens DSM 19672] Length = 238 Score = 218 bits (554), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +Q+R+I + + +Y +GS L+++G+T ++ AT+ E VP +++ T GW+T Sbjct: 1 MRNDGRLNDQLRDIRVVKDYIRYPQGSVLIEYGETKVICNATISEGVPPFLKGTGTGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +EY MLP ST R +RE+ G+ GR+QEI R+IGR+LRS +DLS +G R I IDCDVIQ Sbjct: 61 SEYSMLPCSTHTRNQRESQKGKLTGRTQEISRLIGRSLRSAIDLSLIGERTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++AL+ Q + S ++ +K VAA+S G++ G ++DL+Y Sbjct: 121 ADGGTRTASITGGFLALYIACQKL---SEDLKIGNPIKSFVAAVSLGIVNGEIMLDLNYE 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N + + I+E+QG++E+ TF +D M++L + I LI +QK V++ Sbjct: 178 EDSNAEADINLIANEKSEIIEIQGTSEKGTFDKDMLNKMIDLGLNGINQLIDIQKRVLN 236 >gi|239622472|ref|ZP_04665503.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486] gi|61216065|sp|Q8G7I0|RNPH_BIFLO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|239514469|gb|EEQ54336.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 248 Score = 218 bits (554), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 8 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 68 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 128 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 187 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 188 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 246 >gi|213691324|ref|YP_002321910.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522785|gb|ACJ51532.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 258 Score = 218 bits (554), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 78 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256 >gi|23335847|ref|ZP_00121079.1| COG0689: RNase PH [Bifidobacterium longum DJO10A] gi|189439894|ref|YP_001954975.1| ribonuclease PH [Bifidobacterium longum DJO10A] gi|189428329|gb|ACD98477.1| RNase PH [Bifidobacterium longum DJO10A] Length = 258 Score = 218 bits (554), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 78 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256 >gi|23464887|ref|NP_695490.1| ribonuclease PH [Bifidobacterium longum NCC2705] gi|227545828|ref|ZP_03975877.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813] gi|296453555|ref|YP_003660698.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301] gi|312133310|ref|YP_004000649.1| rph [Bifidobacterium longum subsp. longum BBMN68] gi|23325477|gb|AAN24126.1| probable ribonuclease PH [Bifidobacterium longum NCC2705] gi|227213944|gb|EEI81783.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517381|emb|CBK70997.1| RNAse PH [Bifidobacterium longum subsp. longum F8] gi|296182986|gb|ADG99867.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301] gi|311772524|gb|ADQ02012.1| Rph [Bifidobacterium longum subsp. longum BBMN68] Length = 258 Score = 218 bits (554), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 78 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256 >gi|224282438|ref|ZP_03645760.1| ribonuclease PH [Bifidobacterium bifidum NCIMB 41171] gi|311063782|ref|YP_003970507.1| ribonuclease PH Rph [Bifidobacterium bifidum PRL2010] gi|313139586|ref|ZP_07801779.1| RNase PH [Bifidobacterium bifidum NCIMB 41171] gi|310866101|gb|ADP35470.1| Rph Ribonuclease PH [Bifidobacterium bifidum PRL2010] gi|313132096|gb|EFR49713.1| RNase PH [Bifidobacterium bifidum NCIMB 41171] Length = 254 Score = 218 bits (554), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 109/239 (45%), Positives = 155/239 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 14 IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG QI IDCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ E + +VLK V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 194 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQRAALS 252 >gi|308070476|ref|YP_003872081.1| tRNA nucleotidyltransferase [Paenibacillus polymyxa E681] gi|305859755|gb|ADM71543.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Paenibacillus polymyxa E681] Length = 253 Score = 217 bits (553), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 162/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR +++R + LT V+KYAEGS ++ G+T ++ TAT+EE+VP +++ GW+TA Sbjct: 3 RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQA Sbjct: 63 EYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT +ITG++VAL + + +K + + +A++S G++ ++DL+Y E Sbjct: 123 DGGTRTTSITGSFVALAIAVNKIA-TQHKLPVFPITD-FLASVSVGVVGEKALLDLNYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS VD N VMT SG VE+QG+ E + F ++ +L+L + I +I+ QK+V+ Sbjct: 181 DSKAKVDMNLVMTGSGKYVELQGTGEESPFDRNELDQLLSLGEQGILQMIERQKEVL 237 >gi|300087418|ref|YP_003757940.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527151|gb|ADJ25619.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 240 Score = 217 bits (553), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 109/242 (45%), Positives = 156/242 (64%), Gaps = 10/242 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR N MR +++T +A+GS L++ G T ++ + ++EE+VP ++RN+ GW+TA Sbjct: 3 RIDGRAANAMRPVTITPGFQAFADGSVLIEQGKTRVICSVSMEERVPAFLRNSGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R RE+V G+ GRSQEIQR+IGR+LR+V DLSALG R ++DCDVIQA Sbjct: 63 EYAMLPRATTSRTPRESVKGKVSGRSQEIQRLIGRSLRAVTDLSALGERSFVVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL----SQVLKGHVAAISCGMLCGYPIVDL 177 D GTRTAAITG +VAL+ L + F+L L+ VAAIS M ++D Sbjct: 123 DAGTRTAAITGGYVALYLALNKL------FRLGVFKEMPLRAQVAAISVVMRQNNLLLDP 176 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y ED D D N VM G +E+QG+AE+ F ++ A+L LA+ I L ++Q+ Sbjct: 177 VYEEDCGADADFNLVMNSKGEFLEIQGTAEQRPFKRNTLDAVLGLAEKGIGQLFEIQQTT 236 Query: 238 IS 239 ++ Sbjct: 237 LA 238 >gi|213965923|ref|ZP_03394114.1| ribonuclease PH [Corynebacterium amycolatum SK46] gi|213951501|gb|EEB62892.1| ribonuclease PH [Corynebacterium amycolatum SK46] Length = 253 Score = 217 bits (553), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 110/237 (46%), Positives = 156/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++MR++++TR + GS LV FG+T ++ TA++E+ VP + R++ GW+TA Sbjct: 10 RADGRAVDEMRKVTITRGFTDNPAGSVLVTFGNTRVMCTASVEQSVPRFKRDSGEGWLTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R+ RE++ G+ GR+ EI R+IGR+LR+ +DL LG I IDCDV+QA Sbjct: 70 EYSMLPASTHERMPRESMRGKVKGRTHEISRLIGRSLRAAIDLKELGENTINIDCDVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L ++ LK VAA+S G++ G +DL Y E Sbjct: 130 DGGTRTASITGAYVALADALTYLHAVGA--VPGTPLKAPVAAVSVGIIDGRVCLDLPYEE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS +VD N VMT G VE+QG+ E TF +D ML+ A+ + +LI LQ++V+ Sbjct: 188 DSRAEVDLNVVMTAEGKFVEIQGTGEEGTFDRDQLNDMLDSAEKGLRELIALQQEVL 244 >gi|309792378|ref|ZP_07686846.1| ribonuclease PH [Oscillochloris trichoides DG6] gi|308225599|gb|EFO79359.1| ribonuclease PH [Oscillochloris trichoides DG6] Length = 240 Score = 217 bits (553), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 156/239 (65%), Gaps = 8/239 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR ++R I + + YAEGS L+ G+T +L A+LE +VP W+R + GW+TA Sbjct: 7 RQSGRLPTELRSIEILVNAAPYAEGSALISCGNTRVLCAASLEPQVPGWLRGQQRGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY +LPRST R +RE R G GR+QEIQR+IGR+LR+ VDL ALG I +DCDV+ Sbjct: 67 EYSLLPRSTHTRTRRE----RSGPSGRTQEIQRLIGRSLRAAVDLEALGECMITVDCDVL 122 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTAAITG +VAL L+ + + + ++ VAAIS G++ G ++DLDY Sbjct: 123 QADGGTRTAAITGGYVALALALRKLH--AEGLIATNPIRYAVAAISVGVVEGQMLLDLDY 180 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ D+D N V T SG VEVQG+AE + A+L+LA IA LI +Q+ V+ Sbjct: 181 AEDSSADLDCNIVQTASGAFVEVQGTAEGMPIDRAQLDALLDLASQGIARLITIQQAVL 239 >gi|310286881|ref|YP_003938139.1| rph Ribonuclease PH [Bifidobacterium bifidum S17] gi|309250817|gb|ADO52565.1| rph Ribonuclease PH [Bifidobacterium bifidum S17] Length = 243 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/239 (45%), Positives = 155/239 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 3 IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG QI IDCDV+Q Sbjct: 63 AEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ E + +VLK V+A+S G++ G P++DL Y Sbjct: 123 ADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYI 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 183 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQRAALS 241 >gi|260886704|ref|ZP_05897967.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185] gi|330839468|ref|YP_004414048.1| ribonuclease PH [Selenomonas sputigena ATCC 35185] gi|260863556|gb|EEX78056.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185] gi|329747232|gb|AEC00589.1| ribonuclease PH [Selenomonas sputigena ATCC 35185] Length = 248 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 116/244 (47%), Positives = 159/244 (65%), Gaps = 9/244 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + +R + + R K GS L++ G T ++ A++E++VP ++R T GWI A Sbjct: 3 RIRGRAADALRPLKMMRGFQKGPAGSVLIEMGRTRVICAASVEDRVPYFLRGTGTGWIKA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP +T R REA GRQ GR+QEIQR+IGR+LRSVVDL+ALG R I +DCDVI+A Sbjct: 63 EYALLPSATSTRTPREACQGRQSGRTQEIQRLIGRSLRSVVDLAALGERTIALDCDVIEA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLD 178 DGGTRTAAITGA+VAL +E C++ ++ + K +AA+S G+ G PI+DL Sbjct: 123 DGGTRTAAITGAFVAL------VEACASFYEKGKTFPVKDFLAAVSVGLAQDGEPILDLC 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDST VD N VMT + VEVQG+ E FS+ +L LA+ + +LI QKD + Sbjct: 177 YEEDSTALVDMNVVMTGAYDFVEVQGTGEGRPFSRREMADLLALAEKGVDELIARQKDAL 236 Query: 239 SNEV 242 E+ Sbjct: 237 GGEL 240 >gi|187478429|ref|YP_786453.1| ribonuclease PH [Bordetella avium 197N] gi|115423015|emb|CAJ49545.1| ribonuclease PH [Bordetella avium 197N] Length = 244 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 117/236 (49%), Positives = 162/236 (68%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + +R SL R ++YAEGS LV G+T +L TA++ EKVP +++ GW+T Sbjct: 8 LRADGRAVDTLRAFSLKRGFTRYAEGSVLVVAGNTQVLCTASVLEKVPPFLKGKGEGWVT 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R + +DCDV+Q Sbjct: 68 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLHLDCDVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTR A+ITGAWVA D + + + + L+Q ++ HVAA+S G++ G ++DL+Y Sbjct: 128 ADGGTRCASITGAWVAAADAVALLME---RGLLTQNPIRDHVAAVSVGLVGGRAVLDLNY 184 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D N +MT +G VEVQG+ E ATF++ ML LA+ IA L+ Q+ Sbjct: 185 EEDSACEADVNVIMTGAGAFVEVQGTGEEATFTRAQLDTMLTLAEGGIAKLVAEQR 240 >gi|57233914|ref|YP_182001.1| ribonuclease PH [Dehalococcoides ethenogenes 195] gi|123618391|sp|Q3Z6Z8|RNPH_DEHE1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|57224362|gb|AAW39419.1| ribonuclease PH [Dehalococcoides ethenogenes 195] Length = 239 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 110/236 (46%), Positives = 153/236 (64%), Gaps = 2/236 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R I++T +AEGS L++ G T ++ + ++E+KVP ++RN+ GW+TA Sbjct: 3 RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R +R++ +G+ GRSQEIQR+IGR+LRS VDL+ALG R IIDCDVIQA Sbjct: 63 EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLAALGERSFIIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGA++AL+ + M D ++ VAA+S + G ++D Y E Sbjct: 123 DAGTRTASITGAYIALYLAFKKMVDMGILSKMP--FTSQVAAVSVSIFKGNIVLDPCYDE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D +VD N VM D VE+QG+AE TFS+D +L L + I L +Q + Sbjct: 181 DFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGEAGIWQLFDIQNSI 236 >gi|289422671|ref|ZP_06424511.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L] gi|289156850|gb|EFD05475.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L] Length = 475 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 110/237 (46%), Positives = 159/237 (67%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R++ +TR +KY+ GS L++ G+T ++ TA++EE VP +++ GWITA Sbjct: 26 RPDGRSLDQIRDVKITRNYTKYSAGSVLIEVGNTKVICTASIEEGVPHFMKGAGSGWITA 85 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R KR++ G+ GRSQEIQR+IGR++RSVVD+ ALG R I IDCDVIQA Sbjct: 86 EYSMLPSATESRKKRDSSKGKVDGRSQEIQRLIGRSIRSVVDMEALGERTIWIDCDVIQA 145 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L + ++ +K +AAIS G++ +D+ Y E Sbjct: 146 DGGTRTASITGAYVALADALYKLYKSGQIKKMP--VKNLLAAISIGIIDDEVRLDICYEE 203 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS VD N VM + G +E+QG+ E F++D +L LA+ DL++LQ+ + Sbjct: 204 DSKAMVDTNVVMNNRGEFIEIQGTGEERPFTRDELSRILELAEKGNRDLMRLQRQAL 260 >gi|195953232|ref|YP_002121522.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1] gi|226736913|sp|B4U8T3|RNPH_HYDS0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|195932844|gb|ACG57544.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1] Length = 255 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/234 (45%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +++R I + R + +AEGSCLV+FG+T ++ TA++ E VP +++ GWIT Sbjct: 1 MRKNNRKLDELRPIRIQRDFNIHAEGSCLVEFGNTRVICTASIAESVPPFLKGKNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V+G+ GGR+ EIQRMIGRA+R+V+DL+ +G R I IDCDVIQ Sbjct: 61 AEYSMLPRATATRNMRESVTGKIGGRTHEIQRMIGRAMRAVIDLTKIGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I GA++A+ D + + + K S ++ V A+S G++ ++DLD+ Sbjct: 121 ADGGTRTASIVGAFIAMTDAIIKLNE--QKLINSVPIRDTVGAVSVGIVNDRLMLDLDFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS VD V T +G +VE+ E AT+++ F AML+L + + + +LQ Sbjct: 179 EDSNAAVDMTIVATGNGEMVEIHSLGEEATYTRKEFEAMLDLGLESLKQIAELQ 232 >gi|325110867|ref|YP_004271935.1| RNAse PH [Planctomyces brasiliensis DSM 5305] gi|324971135|gb|ADY61913.1| RNAse PH [Planctomyces brasiliensis DSM 5305] Length = 245 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 114/243 (46%), Positives = 157/243 (64%), Gaps = 4/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58 MR GRQ Q+R I + R + A GS +K G T LL TA+++ VP W ++ ++ GW Sbjct: 1 MRNDGRQAEQLRPIRVQRHFTGSAPGSVYIKAGRTTLLCTASVDLDVPPWKKHEENPSGW 60 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +TAEY MLP ST R +RE + GRS EIQR+IGR+LR+VVD +ALG R I IDCDV Sbjct: 61 VTAEYNMLPGSTSPRKRRERT--KVDGRSSEIQRLIGRSLRAVVDFAALGPRTITIDCDV 118 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ++ADGGTRT ITG ++AL D L ++ ++L VAAIS G++ P++DLD Sbjct: 119 LEADGGTRTLGITGGFIALVDALIWLQKQEPTCDPKKILTDTVAAISVGIVRQTPMLDLD 178 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDST +VD N VMT SG VE+QG+AE+ +FS+ L LA+ I +L ++Q+D Sbjct: 179 YSEDSTAEVDLNVVMTGSGEFVEIQGTAEQKSFSRTQLDQQLGLAEKAIVELTRIQRDAF 238 Query: 239 SNE 241 ++ Sbjct: 239 GDQ 241 >gi|229918348|ref|YP_002886994.1| ribonuclease PH [Exiguobacterium sp. AT1b] gi|229469777|gb|ACQ71549.1| ribonuclease PH [Exiguobacterium sp. AT1b] Length = 249 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 116/227 (51%), Positives = 154/227 (67%), Gaps = 3/227 (1%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R+ +++R + + V+K+AEGS L+ GDT ++ TAT+EE+VP ++R K GWI AEY M Sbjct: 5 RRFDELRPVEIVPHVNKHAEGSVLISIGDTKVICTATVEERVPNFLRGKKQGWINAEYAM 64 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+TG+R RE+V G+Q GR+ EIQR+IGR+LRSVVDL LG R I +DCDVIQADGGT Sbjct: 65 LPRATGDRTVRESVRGKQSGRTMEIQRLIGRSLRSVVDLERLGERTIWVDCDVIQADGGT 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITG + AL + + K + + + +G VAAIS G ++DLDY ED+ Sbjct: 125 RTASITGGFCALVLAVDRLIR-QGKLEDTPIKEG-VAAISVGR-TDELVLDLDYLEDAAA 181 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 +VD N VMT SG VEVQG+ E ATF+ ML LA+ I L K Sbjct: 182 EVDMNVVMTASGRFVEVQGTGEEATFTLQEMNEMLALAQHGIESLFK 228 >gi|310643658|ref|YP_003948416.1| ribonuclease ph:ham1-like protein [Paenibacillus polymyxa SC2] gi|309248608|gb|ADO58175.1| Ribonuclease PH:Ham1-like protein [Paenibacillus polymyxa SC2] Length = 253 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 161/237 (67%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR +++R + LT V+KYAEGS ++ G+T ++ TAT+EE+VP +++ GW+TA Sbjct: 3 RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQA Sbjct: 63 EYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT +ITG++VAL + + +K + + +A++S G++ ++DL+Y E Sbjct: 123 DGGTRTTSITGSFVALAIAVNKIA-IQHKLPVFPITD-FLASVSVGVVGDKALLDLNYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS VD N VMT SG VE+QG+ E + F + +L+L + I +I+ QK+V+ Sbjct: 181 DSKAKVDMNLVMTGSGKYVELQGTGEESPFDRQELDQLLSLGEQGILQMIERQKEVL 237 >gi|154486637|ref|ZP_02028044.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis L2-32] gi|154084500|gb|EDN83545.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis L2-32] Length = 254 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 105/224 (46%), Positives = 151/224 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 14 VRADGRKVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q Sbjct: 74 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + E+ + +VLK V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVALVDAMHWAEEHKHVKSADRVLKDWVSAVSVGVINGKPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS D N MT SG +E+QG+AE F++ +L+LA+ Sbjct: 194 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAE 237 >gi|212716722|ref|ZP_03324850.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM 16992] gi|212660426|gb|EEB21001.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM 16992] Length = 254 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 105/224 (46%), Positives = 151/224 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS LV+ G+T ++ TAT VP W +++ GW+T Sbjct: 14 IRADGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q Sbjct: 74 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ E + +V+K V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAEKHKHIRSADRVIKDSVSAVSVGVIDGKPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS D N MT SG +E+QG+AE F++ +L+LA+ Sbjct: 194 EDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNTLLDLAE 237 >gi|227875768|ref|ZP_03993896.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243] gi|269977414|ref|ZP_06184386.1| ribonuclease PH [Mobiluncus mulieris 28-1] gi|306819041|ref|ZP_07452758.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239] gi|307700330|ref|ZP_07637370.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16] gi|227843710|gb|EEJ53891.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243] gi|269934330|gb|EEZ90892.1| ribonuclease PH [Mobiluncus mulieris 28-1] gi|304648234|gb|EFM45542.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239] gi|307614541|gb|EFN93770.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16] Length = 252 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/234 (47%), Positives = 155/234 (66%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +Q+R ++ EG+ L++ G+T +L A+L E VP W ++T GW+T Sbjct: 1 MRKDGRRIDQLRNMAFHLDWVSTPEGAVLIEAGNTRVLCCASLSEGVPRWRKDTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+QEI R+IGR+LR+ VD +ALG I IDCDV+Q Sbjct: 61 AEYSMLPRATATRSTRESVKGKLGGRTQEISRLIGRSLRAGVDYTALGENTIEIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAW+ALH ++ E ++ F + LK V AIS G++ G +DL Y Sbjct: 121 ADGGTRTAAITGAWIALHRAIE--EGKTSGFIPGEPLKDSVCAISVGIIDGEARLDLPYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ED + D N VMT +G ++EVQG+AE FS++ +L+LA+ ADL + Q Sbjct: 179 EDVRAETDMNVVMTGTGKLIEVQGTAEGEPFSREDLSKLLDLAQGGCADLTRAQ 232 >gi|229818320|ref|ZP_04448601.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM 20098] gi|229784190|gb|EEP20304.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM 20098] Length = 254 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 107/240 (44%), Positives = 155/240 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+TA Sbjct: 15 RADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVTA 74 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG I IDCDV+QA Sbjct: 75 EYAMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENMIQIDCDVLQA 134 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA++TGA+VAL D L E + +VL V+A+S G++ G P++DL Y E Sbjct: 135 DGGTRTASVTGAYVALVDALDWAEKHHHIRSAKKVLTDCVSAVSVGVISGTPMLDLPYVE 194 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D N MT SG +E+QG+AE F++D +L+LA+ +L Q++ ++ + Sbjct: 195 DSAAMTDMNVAMTGSGAFIELQGTAEHRPFTRDELGTLLDLAEKGNKELQAAQREALAKD 254 >gi|254479649|ref|ZP_05092951.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653] gi|214034420|gb|EEB75192.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653] Length = 229 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 109/210 (51%), Positives = 150/210 (71%), Gaps = 4/210 (1%) Query: 32 FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91 G+T ++ TA++E+KVP + + T GWIT+EYGMLPR+T R RE GR GR+ EIQ Sbjct: 1 MGETKVICTASIEDKVPPFQKGTGKGWITSEYGMLPRATEVRNPREVTKGRPSGRTMEIQ 60 Query: 92 RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151 R+IGR+LR+VVDL ALG R I IDCDVIQADGGTRTA+ITG+++AL D L + + K Sbjct: 61 RLIGRSLRAVVDLEALGERTIWIDCDVIQADGGTRTASITGSFIALADALNKLVE---KG 117 Query: 152 QLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210 +L ++ LK VAA+S G++ G ++DL + ED+ VD N VMTD G IVE+QG+ E Sbjct: 118 ELQKIPLKSFVAAVSVGIVEGNKLLDLSFQEDANALVDMNVVMTDKGEIVEIQGTGEGGP 177 Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 FS+ +F +L+LA I +IK+QK+V+S+ Sbjct: 178 FSRQNFEELLDLAAHGIEQIIKIQKEVLSD 207 >gi|227488224|ref|ZP_03918540.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867] gi|227091794|gb|EEI27106.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867] Length = 237 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 103/238 (43%), Positives = 158/238 (66%), Gaps = 7/238 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++RE+ +TR + GS LV+FG T ++ TA+++E VP + +++ GW+TA Sbjct: 7 RADGRATDELREVKITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GR+QEI R++GR+LR+ +DL+ LG I +DCDV+QA Sbjct: 67 EYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L ++ + L VAAIS G++ G+P +DL Y E Sbjct: 127 DGGTRTASITGAYVALADALASIDK-------TDALLPPVAAISVGLIDGHPCLDLPYEE 179 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N +M ++G VE+QG+ E FS++ +L+L + +L++ QK+ ++ Sbjct: 180 DSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQKEALA 237 >gi|260204601|ref|ZP_05772092.1| ribonuclease PH [Mycobacterium tuberculosis K85] gi|289574006|ref|ZP_06454233.1| ribonuclease rphA [Mycobacterium tuberculosis K85] gi|289538437|gb|EFD43015.1| ribonuclease rphA [Mycobacterium tuberculosis K85] Length = 259 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++ Sbjct: 183 DSPAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240 >gi|332981492|ref|YP_004462933.1| ribonuclease PH [Mahella australiensis 50-1 BON] gi|332699170|gb|AEE96111.1| ribonuclease PH [Mahella australiensis 50-1 BON] Length = 247 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 117/240 (48%), Positives = 160/240 (66%), Gaps = 6/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R ++LTR K+ +GS L++ G+T ++ TA +E+KVP +++ T GWIT Sbjct: 1 MRAYHRGFDQLRPVTLTRDYLKHPDGSVLIEAGETKIICTAMIEDKVPPFLKGTGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +EYGMLP ST R RE+ G GR+QEIQR+IGR LRSVVD+SALG R I IDCDVIQ Sbjct: 61 SEYGMLPGSTQARKIRESTRGHIEGRTQEIQRIIGRTLRSVVDISALGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSN--KFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ADGGTRTA+ITG++VAL + + + +F +S + VAA+S G++ G ++DL Sbjct: 121 ADGGTRTASITGSFVALAIAINKLFEKKKIERFPISNL----VAAVSVGIVDGQIMLDLC 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y ED+ VD N MTD G VEVQG+ E A FS+ ++NLA I +L+ LQ D + Sbjct: 177 YDEDARAQVDMNIAMTDDGRFVEVQGTGEAAPFSRRQMDELINLADKGIQELMALQIDCL 236 >gi|88856298|ref|ZP_01130957.1| ribonuclease PH [marine actinobacterium PHSC20C1] gi|88814382|gb|EAR24245.1| ribonuclease PH [marine actinobacterium PHSC20C1] Length = 255 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 113/233 (48%), Positives = 155/233 (66%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ N++R++++ R S AEGS L+ FG T +L TA+ VP W+ GW+TA Sbjct: 3 RHDGRENNELRKVTIERGWSDQAEGSALISFGKTKVLCTASFTNGVPRWMAGKGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST +R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG I+IDCDV+QA Sbjct: 63 EYSMLPRSTNSRMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + + S+ L +AA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIEWGREKKFIGKNSKALFDSLAAVSVGIIDGEPMLDLAYVE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + D N V+T G VEVQG+AE A F + ++L+LA DL +Q Sbjct: 183 DVRAETDMNVVVTGRGLFVEVQGTAEGAPFDRRELDSLLDLALAGAVDLTAMQ 235 >gi|54023062|ref|YP_117304.1| ribonuclease PH [Nocardia farcinica IFM 10152] gi|61215825|sp|Q5Z0V1|RNPH_NOCFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|54014570|dbj|BAD55940.1| putative RNase PH [Nocardia farcinica IFM 10152] Length = 257 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 108/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++RE+ +TR + + GS LV+FG T ++ TA++ E VP W R++ GW+TA Sbjct: 4 RADGRADDELREVRITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPAWRRDSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+A+G I IDCDV+QA Sbjct: 64 EYAMLPAATHTRSGRESVKGRVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTWL-GAAGALADPQPISCAIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L +QK+ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDAALAGCEQLFAVQKEALA 240 >gi|73748973|ref|YP_308212.1| ribonuclease PH [Dehalococcoides sp. CBDB1] gi|147669740|ref|YP_001214558.1| ribonuclease PH [Dehalococcoides sp. BAV1] gi|289432969|ref|YP_003462842.1| ribonuclease PH [Dehalococcoides sp. GT] gi|123619918|sp|Q3ZYH8|RNPH_DEHSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043760|sp|A5FQ49|RNPH_DEHSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|73660689|emb|CAI83296.1| ribonuclease PH [Dehalococcoides sp. CBDB1] gi|146270688|gb|ABQ17680.1| RNAse PH [Dehalococcoides sp. BAV1] gi|288946689|gb|ADC74386.1| ribonuclease PH [Dehalococcoides sp. GT] Length = 241 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 107/241 (44%), Positives = 156/241 (64%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R I++T +AEGS L++ G T ++ + ++E++VP ++RN+ GW+TA Sbjct: 3 RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDRVPQFLRNSGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R +R++ +G+ GRSQEIQR+IGR+LRS VD++ALG R I+DCDVIQA Sbjct: 63 EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDMAALGERSFIVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITG+++AL+ + M D ++ VAA+S + G ++D Y E Sbjct: 123 DAGTRTASITGSYIALYLAFKKMVDMGILSKMP--FTSQVAAVSVSIFKGNIVLDPCYDE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D +VD N VM D G VE+QG+AE FS+D +L L + I L +QK + + Sbjct: 181 DFQAEVDFNLVMNDRGEFVEIQGTAEGKAFSRDTLDQVLKLGEAGIRQLFDIQKGITQPQ 240 Query: 242 V 242 + Sbjct: 241 L 241 >gi|298345213|ref|YP_003717900.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063] gi|304390773|ref|ZP_07372725.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235274|gb|ADI66406.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063] gi|304325656|gb|EFL92902.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 257 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 153/239 (64%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +Q+RE++L EG LV G+T +L +A+L E VP W +++ GW+TA Sbjct: 7 RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGFGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GR+ EI R+IGRALR+ VD +ALG I IDCDV+QA Sbjct: 67 EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAW+AL + D + F + V AIS G++ P +DL Y E Sbjct: 127 DGGTRTASITGAWIALQRAIAVGRD--SGFIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT SG +VEVQG+AE A FS+ A+L+LA+ DL +LQ+ + + Sbjct: 185 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAVDS 243 >gi|227542822|ref|ZP_03972871.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866] gi|227181448|gb|EEI62420.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866] Length = 237 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 103/238 (43%), Positives = 158/238 (66%), Gaps = 7/238 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++RE+ +TR + GS LV+FG T ++ TA+++E VP + +++ GW+TA Sbjct: 7 RADGRATDELREVRITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GR+QEI R++GR+LR+ +DL+ LG I +DCDV+QA Sbjct: 67 EYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L ++ + L VAAIS G++ G+P +DL Y E Sbjct: 127 DGGTRTASITGAYVALADALASIDK-------TDALLPPVAAISVGLIDGHPCLDLPYEE 179 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N +M ++G VE+QG+ E FS++ +L+L + +L++ QK+ ++ Sbjct: 180 DSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQKEALA 237 >gi|255029953|ref|ZP_05301904.1| ribonuclease PH [Listeria monocytogenes LO28] Length = 244 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 110/239 (46%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+AEY Sbjct: 1 GRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYS 60 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQADGG Sbjct: 61 MLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG 120 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDS 183 TRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y EDS Sbjct: 121 TRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNYVEDS 178 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + ++V Sbjct: 179 AAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 237 >gi|238897732|ref|YP_002923411.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259494122|sp|C4K3X0|RNPH_HAMD5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|229465489|gb|ACQ67263.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 241 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 127/243 (52%), Positives = 163/243 (67%), Gaps = 5/243 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R ++ TR +KYAEG+ LV+FG+T +L TAT+EE VP +++ GWIT Sbjct: 1 MRPSGRTAQQLRPLTFTRHYTKYAEGAVLVEFGETRVLCTATVEEGVPRFLKGQNKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R RE+V G+QGGR+ EIQR+I RALR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYSMLPRSTHQRHARESVKGKQGGRTLEIQRLIARALRAAVDLTKLGEFTIKLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D LQ M K + S +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTAAITGACVALQDALQKMR-VEGKLK-SNPMKGLVAAVSVGVVGGESICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED+ + D N VM + G I+E+QG+AE A FS +L LA D I + + QK V Sbjct: 179 EDAIAETDMNVVMIEEGAGRKIIEIQGTAEGAPFSHQQLLELLALADDGIKTIFQAQKKV 238 Query: 238 ISN 240 + Sbjct: 239 LEK 241 >gi|156743859|ref|YP_001433988.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941] gi|156235187|gb|ABU59970.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941] Length = 261 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 113/244 (46%), Positives = 158/244 (64%), Gaps = 8/244 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + +R + ++ YAEGS L++ G+T +L TA++EE VP W+R + GW+T Sbjct: 2 IRNDGRAPSDLRPVRISIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQRGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 AEY +LPRST R +RE R G GR+QEIQR+IGRALR+ V L AL + IDCDV Sbjct: 62 AEYALLPRSTAQRTRRE----RNGLSGRTQEIQRLIGRALRAAVALEALDGFTVTIDCDV 117 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTRTA+ITG +VAL L H + + + + + VAA+S G + G ++DLD Sbjct: 118 LQADGGTRTASITGGYVALALAL-HRLTAAGRLAANPIRRA-VAAVSAGYVGGNALLDLD 175 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS D+D N V+TD G IVEVQ +AE S+ F +++LA D I L+ LQ++ + Sbjct: 176 YSEDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDVLIDLASDGIHRLLALQREAL 235 Query: 239 SNEV 242 + V Sbjct: 236 APVV 239 >gi|212638433|ref|YP_002314953.1| ribonuclease PH [Anoxybacillus flavithermus WK1] gi|226736883|sp|B7GH12|RNPH_ANOFW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|212559913|gb|ACJ32968.1| Ribonuclease PH [Anoxybacillus flavithermus WK1] Length = 255 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 156/241 (64%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR +++R + + K+ EGS L+ GDT ++ TA++E+KVP ++R GWIT Sbjct: 1 MRVDGRTNDELRPVHIEPNYLKHPEGSVLISIGDTKVICTASIEDKVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG + I IDCDVIQ Sbjct: 61 AEYAMIPRATEQRNIREASKGKLSGRTMEIQRLIGRALRSVVDLQKLGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ L M K + + +AA S G+ + I+ DL+Y Sbjct: 121 ADGGTRTASITGAFVAMTLALGKM--VEEKKLPALPITDFLAATSVGIDGEHGIILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT SG VE+QG+ E ATFS + +L +A+ I +LI QK+ + Sbjct: 179 IEDSKAQVDMNIVMTGSGRFVEIQGTGEEATFSYEQLLDLLTVAEKGIHELIARQKEALG 238 Query: 240 N 240 + Sbjct: 239 S 239 >gi|138896231|ref|YP_001126684.1| ribonuclease PH [Geobacillus thermodenitrificans NG80-2] gi|196250189|ref|ZP_03148883.1| ribonuclease PH [Geobacillus sp. G11MC16] gi|166228283|sp|A4IRI5|RNPH_GEOTN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|134267744|gb|ABO67939.1| Ribonuclease PH [Geobacillus thermodenitrificans NG80-2] gi|196210373|gb|EDY05138.1| ribonuclease PH [Geobacillus sp. G11MC16] Length = 255 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 115/242 (47%), Positives = 158/242 (65%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + + K+AEGS L++ GDT ++ TAT+E+KVP ++R GWIT Sbjct: 1 MRTDGRNNRELRPVHIQPHYIKHAEGSVLIEIGDTRVICTATVEDKVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVV+L LG R + IDCDVIQ Sbjct: 61 AEYGMLPRATEQRNAREASKGKVSGRTMEIQRLIGRALRSVVELEQLGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VAL L + K + S ++ +AA S G+ + ++ DL+Y Sbjct: 121 ADGGTRTASITGAYVALVLALSKL-VAEGKLE-SLPVRDFLAATSVGIDPEHGVILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ VD N VMT +G VE+QG+ E A+FS+ +L A+ I LI +Q+ V+ Sbjct: 179 SEDARAKVDMNVVMTGAGQFVEIQGTGEEASFSRAELEELLETAQLGIEQLITIQRRVLG 238 Query: 240 NE 241 + Sbjct: 239 EQ 240 >gi|299822585|ref|ZP_07054471.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601] gi|299816114|gb|EFI83352.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601] Length = 248 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR + ++R+I L + + EGS L+ GDT ++ +A++EEKVP ++R GWI+ Sbjct: 1 MRHDGRNKGELRKIELIKDYLIHPEGSVLISTGDTKVICSASIEEKVPPFMRGEGKGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GGR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYAMLPRATTTRNIRESSKGKVGGRTMEIQRLIGRALRAVVDLDALGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + + +K +AA S G+L ++DL+Y Sbjct: 121 ADGGTRTASITGAFVALALAIEKLYQTVPLAKFP--IKDFLAATSVGILENEGAVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N VMT +G VE+QG+ E ATFS+ ++ L K I L +Q++++ Sbjct: 179 IEDSAAEVDMNIVMTGAGQFVELQGTGEEATFSETDLQELITLGKKGIQALNIMQQEIL 237 >gi|261337982|ref|ZP_05965866.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093] gi|270277482|gb|EFA23336.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093] Length = 255 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 155/239 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR ++MR I +T + EGS L+ G+T ++ TAT + VP W +++ GW+T Sbjct: 14 VRPDGRAVDEMRPIRITDSFTDVPEGSVLIACGNTRVMCTATFTQGVPRWRKDSGQGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VV++ ALG QI +DCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVNMKALGENQIQLDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ + L+ E+ +V+K V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVAMVEALRWAEERRFIRSADKVIKDSVSAVSVGVINGTPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++D +L+LA +L Q+ V++ Sbjct: 194 EDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFTRDELNVLLDLATKGNKELQAAQRAVLN 252 >gi|15608480|ref|NP_215856.1| ribonuclease PH [Mycobacterium tuberculosis H37Rv] gi|15840795|ref|NP_335832.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551] gi|121637271|ref|YP_977494.1| ribonuclease PH [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661129|ref|YP_001282652.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra] gi|148822561|ref|YP_001287315.1| ribonuclease PH [Mycobacterium tuberculosis F11] gi|167969088|ref|ZP_02551365.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra] gi|215403187|ref|ZP_03415368.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987] gi|215410985|ref|ZP_03419793.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A] gi|215426669|ref|ZP_03424588.1| ribonuclease PH [Mycobacterium tuberculosis T92] gi|215430226|ref|ZP_03428145.1| ribonuclease PH [Mycobacterium tuberculosis EAS054] gi|215445522|ref|ZP_03432274.1| ribonuclease PH [Mycobacterium tuberculosis T85] gi|218753051|ref|ZP_03531847.1| ribonuclease PH [Mycobacterium tuberculosis GM 1503] gi|219557243|ref|ZP_03536319.1| ribonuclease PH [Mycobacterium tuberculosis T17] gi|224989745|ref|YP_002644432.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172] gi|253799612|ref|YP_003032613.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435] gi|254364236|ref|ZP_04980282.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str. Haarlem] gi|254550352|ref|ZP_05140799.1| ribonuclease PH [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186279|ref|ZP_05763753.1| ribonuclease PH [Mycobacterium tuberculosis CPHL_A] gi|260200397|ref|ZP_05767888.1| ribonuclease PH [Mycobacterium tuberculosis T46] gi|289442782|ref|ZP_06432526.1| ribonuclease PH [Mycobacterium tuberculosis T46] gi|289446935|ref|ZP_06436679.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A] gi|289554868|ref|ZP_06444078.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605] gi|289569353|ref|ZP_06449580.1| ribonuclease rphA [Mycobacterium tuberculosis T17] gi|289745092|ref|ZP_06504470.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987] gi|289749896|ref|ZP_06509274.1| ribonuclease rphA [Mycobacterium tuberculosis T92] gi|289753422|ref|ZP_06512800.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054] gi|289757445|ref|ZP_06516823.1| ribonuclease rphA [Mycobacterium tuberculosis T85] gi|289761501|ref|ZP_06520879.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503] gi|294994898|ref|ZP_06800589.1| ribonuclease PH [Mycobacterium tuberculosis 210] gi|297633893|ref|ZP_06951673.1| ribonuclease PH [Mycobacterium tuberculosis KZN 4207] gi|297730881|ref|ZP_06959999.1| ribonuclease PH [Mycobacterium tuberculosis KZN R506] gi|298524847|ref|ZP_07012256.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A] gi|306775519|ref|ZP_07413856.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001] gi|306780669|ref|ZP_07419006.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002] gi|306784070|ref|ZP_07422392.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003] gi|306788431|ref|ZP_07426753.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004] gi|306792760|ref|ZP_07431062.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005] gi|306797164|ref|ZP_07435466.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006] gi|306803043|ref|ZP_07439711.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008] gi|306807237|ref|ZP_07443905.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007] gi|306967434|ref|ZP_07480095.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009] gi|307079339|ref|ZP_07488509.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011] gi|307083904|ref|ZP_07493017.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012] gi|313658214|ref|ZP_07815094.1| ribonuclease PH [Mycobacterium tuberculosis KZN V2475] gi|1710618|sp|Q10628|RNPH_MYCTU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228291|sp|A1KID0|RNPH_MYCBP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228295|sp|A5U240|RNPH_MYCTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808595|sp|C1AMY5|RNPH_MYCBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|1419043|emb|CAA99973.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase) [Mycobacterium tuberculosis H37Rv] gi|13880990|gb|AAK45646.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551] gi|121492918|emb|CAL71389.1| Probable ribonuclease rphA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134149750|gb|EBA41795.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str. Haarlem] gi|148505281|gb|ABQ73090.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra] gi|148721088|gb|ABR05713.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis F11] gi|224772858|dbj|BAH25664.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172] gi|253321115|gb|ACT25718.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435] gi|289415701|gb|EFD12941.1| ribonuclease PH [Mycobacterium tuberculosis T46] gi|289419893|gb|EFD17094.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A] gi|289439500|gb|EFD21993.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605] gi|289543107|gb|EFD46755.1| ribonuclease rphA [Mycobacterium tuberculosis T17] gi|289685620|gb|EFD53108.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987] gi|289690483|gb|EFD57912.1| ribonuclease rphA [Mycobacterium tuberculosis T92] gi|289694009|gb|EFD61438.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054] gi|289709007|gb|EFD73023.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503] gi|289713009|gb|EFD77021.1| ribonuclease rphA [Mycobacterium tuberculosis T85] gi|298494641|gb|EFI29935.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A] gi|308215991|gb|EFO75390.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001] gi|308326498|gb|EFP15349.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002] gi|308331139|gb|EFP19990.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003] gi|308334980|gb|EFP23831.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004] gi|308338786|gb|EFP27637.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005] gi|308342427|gb|EFP31278.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006] gi|308346338|gb|EFP35189.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007] gi|308350261|gb|EFP39112.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008] gi|308354910|gb|EFP43761.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009] gi|308362791|gb|EFP51642.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011] gi|308366438|gb|EFP55289.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012] gi|323720157|gb|EGB29260.1| ribonuclease rphA [Mycobacterium tuberculosis CDC1551A] gi|326902963|gb|EGE49896.1| ribonuclease rphA [Mycobacterium tuberculosis W-148] gi|328459358|gb|AEB04781.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 4207] Length = 259 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240 >gi|312139208|ref|YP_004006544.1| ribonuclease ph rpha [Rhodococcus equi 103S] gi|325673486|ref|ZP_08153177.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707] gi|311888547|emb|CBH47859.1| ribonuclease PH RphA [Rhodococcus equi 103S] gi|325555507|gb|EGD25178.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707] Length = 260 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 106/239 (44%), Positives = 159/239 (66%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++RE+ +TR + + GS LV+FG+T ++ TA++EE VP W + + GW+TA Sbjct: 4 REDGRTDDELREVRITRGFTNHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G I IDCDV+QA Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + + Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLR-AAGRLADPQPISCAIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L +Q+ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFAIQQAALAE 241 >gi|240170903|ref|ZP_04749562.1| ribonuclease PH [Mycobacterium kansasii ATCC 12478] Length = 259 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 108/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVVITRGFTENPAGSVLIEFGRTKVLCTASVTEGVPRWRKGSGVGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AAIS G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYLA-AAGKLSDPRPLSCAIAAISVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF + +L++A L Q++ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFAAQREALA 240 >gi|226360555|ref|YP_002778333.1| ribonuclease PH [Rhodococcus opacus B4] gi|226239040|dbj|BAH49388.1| ribonuclease PH [Rhodococcus opacus B4] Length = 262 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 106/234 (45%), Positives = 158/234 (67%), Gaps = 1/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++RE+ +TR + + GS LV+FG+T ++ TA++E+ VP W + T GW+TA Sbjct: 4 REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGTGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G I +DCDV+QA Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + + Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLR-AAGRLADPQPISCGIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L ++QK Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQK 236 >gi|160877892|pdb|3B4T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 gi|160877893|pdb|3B4T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 gi|160877894|pdb|3B4T|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 gi|160877895|pdb|3B4T|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 gi|160877896|pdb|3B4T|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 gi|160877897|pdb|3B4T|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 Length = 262 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA Sbjct: 7 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 67 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 127 DGGTRTAAITGAYVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++ Sbjct: 186 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 243 >gi|291166728|gb|EFE28774.1| ribonuclease PH/Ham1 protein [Filifactor alocis ATCC 35896] Length = 471 Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 160/235 (68%), Gaps = 6/235 (2%) Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69 Q+R+I++ ++KYAEGS LV FGDT ++ TA++EEKVP +++ T GW++AEY MLPRS Sbjct: 6 QLRDINIETGINKYAEGSVLVSFGDTRVICTASVEEKVPAFLKGTGKGWVSAEYAMLPRS 65 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 T R KR++ G+ GR QEIQR+IGR+LR+ +D LG R I IDCDVIQADGGTRTA+ Sbjct: 66 TEQRKKRDSSRGKVDGRGQEIQRLIGRSLRNAIDFDLLGERTIWIDCDVIQADGGTRTAS 125 Query: 130 ITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I+G++VA+ + + D +F +S +++A+S G++ G I+DL+Y DS DV Sbjct: 126 ISGSFVAMAIACKQLYDKKMIEEFPISH----YISAVSVGIVNGKNILDLNYEFDSKADV 181 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D N VM ++ VE+QG+AE F + ++L LA+ ++I+LQK + ++ Sbjct: 182 DLNVVMNENLEYVELQGTAEGVAFRRQQLDSLLTLAEIGCKEIIELQKTALGKQI 236 >gi|315655635|ref|ZP_07908533.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333] gi|315489699|gb|EFU79326.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333] Length = 257 Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 153/239 (64%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +Q+RE++L EG LV G+T +L +A+L E VP W +++ GW+TA Sbjct: 7 RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GR+ EI R+IGRALR+ VD +ALG I IDCDV+QA Sbjct: 67 EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAW+AL + D + F + V AIS G++ P +DL Y E Sbjct: 127 DGGTRTASITGAWIALQRAIAVGRD--SGFIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT SG +VEVQG+AE A FS+ A+L+LA+ DL +LQ+ + + Sbjct: 185 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAVDS 243 >gi|296139019|ref|YP_003646262.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162] gi|296027153|gb|ADG77923.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162] Length = 260 Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R +++TR ++ GS LV+FG+T +L TA++E VP W R + GW+TA Sbjct: 4 RADGRADDELRPVTITRGFTQNPAGSVLVEFGNTKVLCTASVELGVPGWRRGSGQGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE+ G+ GGR+ EI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPGATHERSRRESTKGKVGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ + K Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTASITGAYVALCDAVTYL-GAAGKLTDPQPISCAIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+ E ATF++ ML+ A L +QK ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFARTTLDWMLDSALSGTEKLFAVQKQALA 240 >gi|148656132|ref|YP_001276337.1| ribonuclease PH [Roseiflexus sp. RS-1] gi|148568242|gb|ABQ90387.1| RNAse PH [Roseiflexus sp. RS-1] Length = 245 Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 154/241 (63%), Gaps = 8/241 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +R + +T YAEGS L++ G+T +L TA++EE VP W+R + GW+T Sbjct: 2 VRNDGRAPADLRPVRITIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQRGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 EY +LPRST R +RE R G GR+QEIQR+IGRALR+ V L AL + +DCDV Sbjct: 62 GEYALLPRSTAQRTRRE----RNGVSGRTQEIQRLIGRALRAAVSLEALDGFTVTVDCDV 117 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTRTA+ITG +VAL L + + S L+ VAA+S G + G ++DLD Sbjct: 118 LQADGGTRTASITGGYVALALALHRL--TAEGRLASNPLQRAVAAVSAGYVAGCALLDLD 175 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS D+D N V+TD G IVEVQ +AE S+ F A+++LA D I L+ +Q+ + Sbjct: 176 YSEDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDALIDLATDGIRRLLAIQRAAL 235 Query: 239 S 239 + Sbjct: 236 A 236 >gi|308378909|ref|ZP_07484288.2| ribonuclease rphA [Mycobacterium tuberculosis SUMu010] gi|308358854|gb|EFP47705.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu010] Length = 296 Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA Sbjct: 41 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 100 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 101 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 160 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 161 DGGTRTAAITGAYVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 219 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++ Sbjct: 220 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 277 >gi|294787659|ref|ZP_06752903.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453] gi|294483952|gb|EFG31635.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453] Length = 245 Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 116/234 (49%), Positives = 162/234 (69%), Gaps = 4/234 (1%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R N++REI++ +A+GS L+ G+T ++ TAT+++ VP ++R GW+TAEYGM Sbjct: 12 RAANELREITIQPNFLPHADGSVLISCGNTKVICTATIDQNVPSFLRGKGEGWVTAEYGM 71 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R+KREA SG+Q GR+QEIQR+IGR+LR+ VD+ LG RQI+IDCDVIQADGGT Sbjct: 72 LPASTQSRMKREAASGKQSGRTQEIQRLIGRSLRACVDMKKLGERQILIDCDVIQADGGT 131 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDST 184 RT +ITGA+VAL +Q M N +L + L G VAA+S G++ G P++DLDY EDS Sbjct: 132 RTTSITGAFVALKMAIQKM---LNDGRLPETPLIGSVAAVSVGVVGGVPLLDLDYPEDSN 188 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N VM ++ I+E+QG+AE A FS ++ L + I L +LQ+ + Sbjct: 189 CDSDVNLVMLNADKIIEIQGTAEGAAFSLAELQTLIALGQKGITQLAQLQQKAL 242 >gi|154507583|ref|ZP_02043225.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC 17982] gi|153797217|gb|EDN79637.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC 17982] Length = 235 Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 107/220 (48%), Positives = 148/220 (67%) Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +TR S EGS L++FG+T +L A+ E VP W R++ GW+T EY MLPR+T R Sbjct: 1 MTRGWSGTGEGSVLIEFGNTRVLCVASFTEGVPRWKRDSGEGWVTGEYSMLPRATEQRSS 60 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE+V G+ GGR+QEI R+IGR+LR +VD+SALG I++DCDV++ADGGTRTAAITGA+V Sbjct: 61 RESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLRADGGTRTAAITGAYV 120 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL D + ++ ++VL ++AIS G++ G P++DL Y ED + D N V T Sbjct: 121 ALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYVEDVRAETDMNVVQTG 180 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 SG +EVQG+AE A F++D +L+LA A L + QK Sbjct: 181 SGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQK 220 >gi|255659135|ref|ZP_05404544.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544] gi|260848582|gb|EEX68589.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544] Length = 248 Score = 214 bits (546), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 112/240 (46%), Positives = 157/240 (65%), Gaps = 9/240 (3%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R + R KY GS L++ G+T ++ A++E++VP ++R T GWI AEY + Sbjct: 7 RTADALRPYEMHRHFQKYPAGSVLIEMGNTKVICAASIEDRVPFFLRGTGEGWIAAEYSL 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP +T R +REAV G+Q GR+QEI+R+IGR+LRSVVD ALG R I+IDCDVIQADGGT Sbjct: 67 LPSATETRTQREAVRGKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCDVIQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182 RTA+ITGA+VAL +E C++ ++ ++ K ++AIS G+ G PI+DL Y ED Sbjct: 127 RTASITGAFVAL------VEACASFYEKGKIFPVKDFLSAISVGVSHEGVPILDLCYEED 180 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 S VD N VMT G VEVQG+ E F+ + +L L + +LI +KDV+ E+ Sbjct: 181 SRAIVDMNVVMTGVGRFVEVQGTGEGRPFTHEELGELLALGEKGCRELISYEKDVLGGEL 240 >gi|145296503|ref|YP_001139324.1| ribonuclease PH [Corynebacterium glutamicum R] gi|166228277|sp|A4QGQ6|RNPH_CORGB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|140846423|dbj|BAF55422.1| hypothetical protein [Corynebacterium glutamicum R] Length = 245 Score = 214 bits (546), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 154/234 (65%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 9 RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE+++G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA Sbjct: 69 EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D ++ +++ L VAA+S G++ G +DL Y E Sbjct: 129 DGGTRTASITGAYVALADAIKVLQE--RGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS DVD N VMT+ G VE+QG+ E TF++ ML+ A+ +L+ QK Sbjct: 187 DSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDYAEKGCRELVAAQK 240 >gi|108758625|ref|YP_630239.1| ribonuclease PH [Myxococcus xanthus DK 1622] gi|122389586|sp|Q1DAT4|RNPH_MYXXD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|108462505|gb|ABF87690.1| ribonuclease PH [Myxococcus xanthus DK 1622] Length = 237 Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 114/238 (47%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +R + LT VS+YAEGS V+FG T +L T + EE+VP + GW+T Sbjct: 1 MRSFQRGALDLRPVVLTPGVSRYAEGSVQVEFGHTKVLVTCSTEERVPPHLMGKGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +RE+ G+Q GR+ EIQR+IGR+LR+ VDLS LG R + +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNQRESAKGKQTGRTMEIQRLIGRSLRAAVDLSTLGPRTLTLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL L+ ++ +L ++ +AA+S G++ G VDLDY Sbjct: 121 ADGGTRTASITGAYVALVLALRSLQKAGTISKLPKLTP--LAAVSVGIVKGEVRVDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST DVD N V T G +VE+QG+AE F + AM++ I L Q V+ Sbjct: 179 EDSTADVDLNLVATADGRMVELQGTAEHQLFDRKALDAMVDGGLAAIQKLTAAQAQVL 236 >gi|260654137|ref|ZP_05859627.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1] gi|260631122|gb|EEX49316.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1] Length = 250 Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 107/238 (44%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR +R+ISLT V+++AEGSCLV++G+T +L TA+++ KVP ++R + GW+T Sbjct: 6 LRNNGRGACDLRKISLTLDVNRWAEGSCLVEWGETKVLCTASVDNKVPPFLRGSGQGWVT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V GRQ GRS EI R+IGR+LR+ VDL+ LG + +DCDV+Q Sbjct: 66 AEYAMLPRATSSRTVRESVKGRQSGRSMEISRLIGRSLRASVDLAQLGELTVTLDCDVLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA++AL ++ + + + + VAA+S G + G + DLDY Sbjct: 126 ADGGTRTASITGAFLALAGAVRSL--IAGGRIAASPFRMPVAAVSIGKVDGQILTDLDYS 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N V +G +E+QG+ E TFS+ +L+ ++ +A + +LQ+ + Sbjct: 184 EDSRAEVDFNVVGNGNGVFIELQGTGEGGTFSRSELNELLDCGENALAQITELQRKTM 241 >gi|315656450|ref|ZP_07909339.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493009|gb|EFU82611.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 259 Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 153/239 (64%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +Q+RE++L EG LV G+T +L +A+L E VP W +++ GW+TA Sbjct: 9 RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GR+ EI R+IGRALR+ VD +ALG I IDCDV+QA Sbjct: 69 EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAW+AL + D + F + V AIS G++ P +DL Y E Sbjct: 129 DGGTRTASITGAWIALQCAIAVGRD--SGFIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT SG +VEVQG+AE A FS+ A+L+LA+ DL +LQ+ + + Sbjct: 187 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAVDS 245 >gi|260889914|ref|ZP_05901177.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254] gi|260860520|gb|EEX75020.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254] Length = 239 Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 110/234 (47%), Positives = 159/234 (67%), Gaps = 4/234 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R + R+ ++MRE+ +T+ + EGS L++FG+T ++ AT+EEK+P W++ T GW+T Sbjct: 9 VRKNNRKNDEMREVKVTKNYIIHPEGSVLMEFGNTKVICNATVEEKIPRWLKGTGSGWVT 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T RV+RE+ G+ GR+ EIQR+IGRALR+ +DL LG R I+IDCDVIQ Sbjct: 69 AEYSMLPRATNARVQRESTKGKLSGRTMEIQRLIGRALRAAIDLEKLGERTIMIDCDVIQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179 ADGGTRTA+ITGA++AL ++ + D + +L + +K VAAIS G + ++DL+Y Sbjct: 129 ADGGTRTASITGAYLALELAIEKLID---EGKLKDIPIKSKVAAISVGKVRNELLLDLEY 185 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS DVD N VM D G +E+QG+ E ATF+ + L+K+ L L Sbjct: 186 EEDSRADVDMNIVMNDKGEFIELQGTGEEATFTHAELLKFIELSKNAFDKLFSL 239 >gi|328953246|ref|YP_004370580.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109] gi|328453570|gb|AEB09399.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109] Length = 255 Score = 214 bits (545), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 115/241 (47%), Positives = 158/241 (65%), Gaps = 8/241 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R++ +T R AEG+ L+ G T ++ TAT+EE+VP +++++ GW+T Sbjct: 12 IRSEGRRLDELRQVKITPRYLSQAEGAVLISLGRTWVICTATVEERVPAFLQDSGQGWVT 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R R A G+ RSQEIQR+IGR+LR+VVDL ALG R I++DCDVIQ Sbjct: 72 AEYDMLPRATHSRHPRSANLGKPSSRSQEIQRLIGRSLRAVVDLDALGERTIVLDCDVIQ 131 Query: 121 ADGGTRTAAITGAWVALHDC---LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ADGGTRTAAITGA+VAL + LQ E + L Q VAA+S G+ +VDL Sbjct: 132 ADGGTRTAAITGAFVALCEALAGLQRQEIIATLPVLDQ-----VAAVSVGLANDQILVDL 186 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DY EDS +VDANFV+T G +VEVQ + ER F ML A+ + L + Q+ Sbjct: 187 DYQEDSRAEVDANFVVTGRGQLVEVQATGERGPFRPALLLEMLERAQPALQRLRQAQEKA 246 Query: 238 I 238 + Sbjct: 247 L 247 >gi|261418318|ref|YP_003252000.1| ribonuclease PH [Geobacillus sp. Y412MC61] gi|319767722|ref|YP_004133223.1| ribonuclease PH [Geobacillus sp. Y412MC52] gi|261374775|gb|ACX77518.1| ribonuclease PH [Geobacillus sp. Y412MC61] gi|317112588|gb|ADU95080.1| ribonuclease PH [Geobacillus sp. Y412MC52] Length = 256 Score = 214 bits (545), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 117/236 (49%), Positives = 153/236 (64%), Gaps = 3/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT Sbjct: 1 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VAL L + + L ++ +AA S G+ + ++ DLDY Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGKLEALP--IRDFLAATSVGIDPEHGVILDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQR 234 >gi|291456091|ref|ZP_06595481.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213] gi|291382500|gb|EFE90018.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213] Length = 258 Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 103/224 (45%), Positives = 150/224 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 78 AEYAMLPRATSERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + +VLK +V+A+S G++ G P++DL Y Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHHHIKSADKVLKDYVSAVSVGVINGTPMLDLPYI 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS D N MT SG +E+QG+AE F++ +L+LA+ Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAE 241 >gi|56381043|dbj|BAD76951.1| ribonuclease PH [Geobacillus kaustophilus HTA426] Length = 257 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/236 (49%), Positives = 153/236 (64%), Gaps = 3/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT Sbjct: 2 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ Sbjct: 62 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VAL L + + L ++ +AA S G+ + ++ DLDY Sbjct: 122 ADGGTRTASITGAYVALVLALAKLVEEGRLEALP--IRDFLAATSVGIDPEHGVILDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ Sbjct: 180 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQR 235 >gi|161551792|ref|YP_148519.2| ribonuclease PH [Geobacillus kaustophilus HTA426] gi|61215778|sp|Q5KWI5|RNPH_GEOKA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase Length = 256 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/236 (49%), Positives = 153/236 (64%), Gaps = 3/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT Sbjct: 1 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VAL L + + L ++ +AA S G+ + ++ DLDY Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGRLEALP--IRDFLAATSVGIDPEHGVILDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQR 234 >gi|297529172|ref|YP_003670447.1| ribonuclease PH [Geobacillus sp. C56-T3] gi|297252424|gb|ADI25870.1| ribonuclease PH [Geobacillus sp. C56-T3] Length = 460 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/236 (49%), Positives = 153/236 (64%), Gaps = 3/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT Sbjct: 1 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VAL L + + L ++ +AA S G+ + ++ DLDY Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGKLEALP--IRDFLAATSVGIDPEHGVILDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQR 234 >gi|152967706|ref|YP_001363490.1| ribonuclease PH [Kineococcus radiotolerans SRS30216] gi|151362223|gb|ABS05226.1| ribonuclease PH [Kineococcus radiotolerans SRS30216] Length = 248 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 144/222 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TR +AEGS LV+FG T +L A+ E VP W + + GW+TA Sbjct: 10 RADGRAVDELRPVTITRNWLDHAEGSVLVEFGRTRVLCAASFTEGVPRWRKGSGQGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD LG I++DCDV+QA Sbjct: 70 EYAMLPRATNTRGDRESVKGKIGGRTHEISRLIGRSLRAVVDTKQLGENTIVLDCDVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TGA+VAL D + Q L G V+AIS G++ G P++DL Y E Sbjct: 130 DGGTRTAAVTGAYVALADAISWARGQGIVKASRQPLTGSVSAISVGVVDGVPVLDLPYVE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 D + D N V+T G VEVQG+AE F + A+L+LA Sbjct: 190 DVRAETDMNVVVTGDGRFVEVQGTAEGTPFDRAELDALLDLA 231 >gi|134097802|ref|YP_001103463.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338] gi|166228314|sp|A4F913|RNPH_SACEN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|133910425|emb|CAM00538.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338] Length = 251 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 108/238 (45%), Positives = 155/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++ +RE+ +TR + GS LV+FG T +L A+++E VP W + GW+TA Sbjct: 3 RADGRSDDALREVRITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+V GR GGR+ EI R++GR+LR+ +DL+ALG I +DCDVIQA Sbjct: 63 EYAMLPSSTNTRSARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + + L +AA+S G++ G +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAITWLS-AAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD G +VEVQG+ E ATF++ M++ A ++L ++Q + ++ Sbjct: 182 DSRAEVDMNVVATDHGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALA 239 >gi|296118694|ref|ZP_06837270.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM 20306] gi|295968183|gb|EFG81432.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM 20306] Length = 242 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 107/234 (45%), Positives = 157/234 (67%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TR + GS LV+FG+T ++ TA++E+ VP + +++ GW+TA Sbjct: 6 RADGRDLDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEQGVPRFKKDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R+IGR+LR+ VDLSALG I +DCDV+QA Sbjct: 66 EYAMLPSATHDRMPRESMKGKVKGRTHEISRLIGRSLRAAVDLSALGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + +++ + L +AA+S GM+ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAVLKE--QGVVPGEPLLQPIAAVSVGMVEGNVCLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N VM +SG+ VEVQG+ E F +D AML++A+ +LI Q+ Sbjct: 184 DSRAEVDLNVVMQESGNFVEVQGTGENGLFGRDELNAMLDVAQKGCVELIAAQR 237 >gi|111018437|ref|YP_701409.1| ribonuclease PH [Rhodococcus jostii RHA1] gi|110817967|gb|ABG93251.1| tRNA nucleotidyltransferase [Rhodococcus jostii RHA1] Length = 262 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 158/234 (67%), Gaps = 1/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++RE+ +TR + + GS LV+FG+T ++ TA++E+ VP W + + GW+TA Sbjct: 4 REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G I +DCDV+QA Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + + Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLR-AAGRLADPQPISCGIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L ++QK Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQK 236 >gi|23308945|ref|NP_601703.2| ribonuclease PH [Corynebacterium glutamicum ATCC 13032] gi|62391341|ref|YP_226743.1| ribonuclease PH [Corynebacterium glutamicum ATCC 13032] gi|24638170|sp|Q8NMR4|RNPH_CORGL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|21325272|dbj|BAB99894.1| RNase PH [Corynebacterium glutamicum ATCC 13032] gi|41326682|emb|CAF21164.1| PROBABLE RIBONUCLEASE PH [Corynebacterium glutamicum ATCC 13032] Length = 245 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 154/234 (65%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 9 RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE+++G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA Sbjct: 69 EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D ++ +++ L VAA+S G++ G +DL Y E Sbjct: 129 DGGTRTASITGAYVALADAIKVLQE--RGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS DVD N VMT+ G VE+QG+ E TF++ ML+ A+ +L+ QK Sbjct: 187 DSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDHAEKGCRELVAAQK 240 >gi|332749902|gb|EGJ80314.1| ribonuclease PH [Shigella flexneri K-671] Length = 211 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 112/212 (52%), Positives = 145/212 (68%), Gaps = 2/212 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 LV+FGDT +L TA++EE VP +++ GWITAEYGMLPRST R REA G+QGGR+ Sbjct: 2 LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTM 61 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+I RALR+ VDL ALG I +DCDV+QADGGTRTA+ITGA VAL D LQ + Sbjct: 62 EIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKL--VE 119 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 N + +KG VAA+S G++ G I DL+Y EDS + D N VMT+ G I+EVQG+AE Sbjct: 120 NGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 179 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 F+ + +L LA+ I ++ QK ++N Sbjct: 180 EPFTHEELLTLLALARGGIESIVATQKAALAN 211 >gi|327439325|dbj|BAK15690.1| RNase PH [Solibacillus silvestris StLB046] Length = 250 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 109/236 (46%), Positives = 157/236 (66%), Gaps = 3/236 (1%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R N++R + + + EGS L+ G+T ++ TAT+EEKVP ++R GWITAEY M Sbjct: 7 RAVNELRPVQIDNNYLMHPEGSVLITVGNTKVICTATIEEKVPGFLRGQGKGWITAEYSM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T R +RE+ +G+ GR+ EIQR+IGRALR+VVDL ALG + + IDCDVIQADGGT Sbjct: 67 LPRATEQRTRRESSAGKVSGRTMEIQRLIGRALRAVVDLEALGEKTVWIDCDVIQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDST 184 RTA+ITGA+VA+ + + +K ++ + ++AA S G L ++DL+Y EDS Sbjct: 127 RTASITGAFVAMTQAIAKL--GVDKPFVNFPVTDYLAATSVGKLENIGAVLDLNYVEDSA 184 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 VD N +MT +G VE+QG+ E ATFS+ +L+L + IA LI++QK + + Sbjct: 185 AQVDMNVIMTGAGEFVELQGTGEEATFSRSELNELLDLGEAGIAQLIEMQKTALGD 240 >gi|292669539|ref|ZP_06602965.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541] gi|292648748|gb|EFF66720.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541] Length = 248 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 158/238 (66%), Gaps = 9/238 (3%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R+ +Q+R + + R +Y GS LV+ G T ++ AT+EE+VP +++ + GW+TAEY M Sbjct: 7 RRTDQLRPVHIERGYQRYPAGSALVETGHTRVVCAATVEERVPFFLKGSGTGWVTAEYAM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP + R REAV GRQ GR+QEIQR+IGRALR+VVD+ LG R I IDCDV+QADGGT Sbjct: 67 LPGAGAERTAREAVRGRQSGRTQEIQRLIGRALRAVVDMKVLGERTIHIDCDVLQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182 RTA++TGA+VAL +E C+ + + + +VAA+S G+ G P++D+ Y ED Sbjct: 127 RTASVTGAFVAL------VEACATFYTKHGIFPVRDYVAAVSVGIDTEGTPLLDICYEED 180 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 S+ VD N VMT +G VEVQG+ E +FS+ A+L+L + I +LI+ QK + Sbjct: 181 SSAMVDMNLVMTGAGEFVEVQGTGEGRSFSRAEMNALLDLGERGIRELIEHQKTALGE 238 >gi|313835876|gb|EFS73590.1| ribonuclease PH [Propionibacterium acnes HL037PA2] gi|314927124|gb|EFS90955.1| ribonuclease PH [Propionibacterium acnes HL044PA1] gi|314970767|gb|EFT14865.1| ribonuclease PH [Propionibacterium acnes HL037PA3] gi|328906032|gb|EGG25807.1| tRNA nucleotidyltransferase [Propionibacterium sp. P08] Length = 252 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 110/237 (46%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 14 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 73 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+V+D ALG II+DCDV+QA Sbjct: 74 EYEMLPRATNERSGRESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILDCDVLQA 133 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + + + + G V AIS G++ G P++DL Y E Sbjct: 134 DGGTRTASITGAYVALVDAVNWLR--KRGGLVGEPITGSVQAISVGVVGGVPMLDLAYEE 191 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ SG VE+QG+AE A F++D +L+LA L + Q +V+ Sbjct: 192 DSRADTDMNVVMSGSGDFVEIQGTAEGAPFNRDLLNELLDLAAGGCVTLKQAQSEVL 248 >gi|169628575|ref|YP_001702224.1| ribonuclease PH [Mycobacterium abscessus ATCC 19977] gi|226736919|sp|B1MLZ3|RNPH_MYCA9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|169240542|emb|CAM61570.1| Probable ribonuclease PH [Mycobacterium abscessus] Length = 258 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 114/238 (47%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ++++R +++TR + + GS L++FG T ++ TA+ E VP W + + GW+TA Sbjct: 4 REDGRQDDELRPVTITRGFTSHPAGSVLIEFGQTRVMCTASATEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+V GR GGR+QEI R+IGR+LR+ +DLSALG I IDCDV+QA Sbjct: 64 EYAMLPASTHTRSDRESVKGRVGGRTQEISRLIGRSLRACIDLSALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYLA-AHGKLADDEPLSCAIAAVSVGVVDGRVRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+ E ATF++ +L+ A L LQK+ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFARSTLDKLLDAAVGAADQLFVLQKEALA 240 >gi|115377533|ref|ZP_01464733.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1] gi|115365473|gb|EAU64508.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1] Length = 276 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 111/228 (48%), Positives = 148/228 (64%), Gaps = 2/228 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 +R ++LT VS++AEGS V+FG T ++ T ++EE+VP + GW+TAEYGMLPRST Sbjct: 50 LRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVTAEYGMLPRST 109 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+Q GR+ EIQR+IGR++R+ V+LS LG R + +DCDVIQADGGTRTA+I Sbjct: 110 HTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQADGGTRTASI 169 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TGA+VAL L+ + ++ + +AA+S G++ G VDLDY EDS DVD N Sbjct: 170 TGAYVALVMALRSLNSKGTLSRMPSLTP--LAAVSVGVVKGEVRVDLDYEEDSAADVDLN 227 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 V T G IVEVQG+AE F + AML+ I L Q V+ Sbjct: 228 LVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKVL 275 >gi|31792536|ref|NP_855029.1| ribonuclease PH [Mycobacterium bovis AF2122/97] gi|59798839|sp|Q7U076|RNPH_MYCBO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|31618125|emb|CAD94236.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase) [Mycobacterium bovis AF2122/97] Length = 259 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GR+QEI R+I R+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLISRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240 >gi|310820087|ref|YP_003952445.1| ribonuclease ph [Stigmatella aurantiaca DW4/3-1] gi|309393159|gb|ADO70618.1| Ribonuclease PH [Stigmatella aurantiaca DW4/3-1] Length = 237 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 111/228 (48%), Positives = 148/228 (64%), Gaps = 2/228 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 +R ++LT VS++AEGS V+FG T ++ T ++EE+VP + GW+TAEYGMLPRST Sbjct: 11 LRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVTAEYGMLPRST 70 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+Q GR+ EIQR+IGR++R+ V+LS LG R + +DCDVIQADGGTRTA+I Sbjct: 71 HTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQADGGTRTASI 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TGA+VAL L+ + ++ + +AA+S G++ G VDLDY EDS DVD N Sbjct: 131 TGAYVALVMALRSLNSKGTLSRMPSLTP--LAAVSVGVVKGEVRVDLDYEEDSAADVDLN 188 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 V T G IVEVQG+AE F + AML+ I L Q V+ Sbjct: 189 LVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKVL 236 >gi|300789523|ref|YP_003769814.1| ribonuclease PH [Amycolatopsis mediterranei U32] gi|299799037|gb|ADJ49412.1| ribonuclease PH [Amycolatopsis mediterranei U32] Length = 258 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 112/238 (47%), Positives = 160/238 (67%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++Q+R+I +TR ++ GS L++FG+T +L A++ E VP W + GW+TA Sbjct: 3 RKDGRNDDQLRDIKITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+ EI R+IGR+LR+ +DL+ALG I+IDCDVIQA Sbjct: 63 EYAMLPSATNTRGDRESVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TG +VAL D + + +N+ Q L VAA+S G++ G +DL Y E Sbjct: 123 DGGTRTAAVTGGYVALADAITWLS-AANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G ++EVQG+ E ATF++ ML++A A+L +LQ + ++ Sbjct: 182 DSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDMALAGCAELTRLQNEALA 239 >gi|126652649|ref|ZP_01724810.1| ribonuclease PH [Bacillus sp. B14905] gi|126590498|gb|EAZ84616.1| ribonuclease PH [Bacillus sp. B14905] Length = 248 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 111/243 (45%), Positives = 156/243 (64%), Gaps = 7/243 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + + + EGS L++ G+T ++ TAT+E+KVP ++R GWITA Sbjct: 3 RFDGRMADELRPVKMVGEYLLHPEGSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQA Sbjct: 63 EYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178 DGGTRTA+ITGA+VA+ + E KF ++ L AA S G++ ++DL+ Sbjct: 123 DGGTRTASITGAFVAMTQAIAKFAEEKPFVKFPVTDFL----AATSVGIVEEQGAVLDLN 178 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y ED VD N VMT +G VE+QG+ E ATFS++ +L L + I L++LQK + Sbjct: 179 YVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNDLLALGEKGIQQLVELQKTAL 238 Query: 239 SNE 241 + + Sbjct: 239 AEQ 241 >gi|229821215|ref|YP_002882741.1| ribonuclease PH [Beutenbergia cavernae DSM 12333] gi|229567128|gb|ACQ80979.1| ribonuclease PH [Beutenbergia cavernae DSM 12333] Length = 279 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 105/213 (49%), Positives = 144/213 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + +R I +TR AEGS LV+FG+T +L A+ VP W + + GW+T Sbjct: 14 VRADGRAPDDLRPIRITRGWLDAAEGSVLVEFGNTRVLCAASFTAGVPRWRKGSGEGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D++ALG I++DCDV+Q Sbjct: 74 AEYAMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRAVIDVAALGENTIVVDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + + VL+ V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTAAITGAYVALADAVAWGLEHGEVRRGAHVLRDSVSAVSVGIVDGAPLLDLPYA 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 ED + D N V+T SG VEVQG+AE A F + Sbjct: 194 EDVRAETDMNVVVTGSGSFVEVQGTAEGAPFDR 226 >gi|311031422|ref|ZP_07709512.1| ribonuclease PH [Bacillus sp. m3-13] Length = 253 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 108/238 (45%), Positives = 159/238 (66%), Gaps = 3/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR++NQ+REI + + EGS L+ G+T ++ +AT+E++VP ++R GWITA Sbjct: 3 RTDGREQNQLREIEIITDYITHPEGSVLISVGNTKVICSATIEDRVPPFMRGGGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L +G + I IDCDVIQA Sbjct: 63 EYSMLPRATEKRTMRESTKGKVTGRTMEIQRLIGRALRSVVELDKIGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYG 180 DGGTRTA+ITGA+VA+ Q + + L + +AA S G++ G ++DL+Y Sbjct: 123 DGGTRTASITGAFVAMVLAFQKLVEAKRIASLP--VTDFLAATSVGVMKDGQALLDLNYI 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST VD N +MT S +VE+QG+ E +TF++ +L++A++ I L+++QK + Sbjct: 181 EDSTAQVDMNVIMTGSLDLVELQGTGEESTFTRKQLNELLDMAEEGILHLVEVQKKAL 238 >gi|269216890|ref|ZP_06160744.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122] gi|269129697|gb|EEZ60781.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122] Length = 246 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 113/238 (47%), Positives = 160/238 (67%), Gaps = 5/238 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R + MR+++L R V K A GSCLVKFGDTH+L +AT+E++V W + + GW+TA Sbjct: 11 RVDNRLDRAMRDVTLERGVMKNASGSCLVKFGDTHVLVSATIEDRVAGWRKGSGLGWLTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR-QIIIDCDVIQ 120 EY MLP + R RE GR+ GRSQEI+R+IGR+LR+V D+ +G + IDCDV+Q Sbjct: 71 EYAMLPAAGTKRTPRE-TKGRK-GRSQEIERLIGRSLRNVCDMGRMGGEVTMTIDCDVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVA D + M + + + + L G VAA+S GM+ G ++DLDY Sbjct: 129 ADGGTRTASITGAWVAAWDAFE-MWRMAGRCK-TNPLFGQVAAVSVGMVGGRLLLDLDYR 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS ++D N VM G +VEVQG+ E+ +FS+ ML++A+ I L++ Q+ + Sbjct: 187 EDSQAEIDMNVVMNGKGELVEVQGTGEQVSFSRATLNEMLDMAQAGIDGLLEKQRAAV 244 >gi|226307366|ref|YP_002767326.1| ribonuclease PH [Rhodococcus erythropolis PR4] gi|229494008|ref|ZP_04387777.1| ribonuclease PH [Rhodococcus erythropolis SK121] gi|259494126|sp|C1A1V2|RNPH_RHOE4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226186483|dbj|BAH34587.1| ribonuclease PH [Rhodococcus erythropolis PR4] gi|229319077|gb|EEN84929.1| ribonuclease PH [Rhodococcus erythropolis SK121] Length = 261 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 159/239 (66%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR + + GS LV+FG+T ++ TA++EE VP W + + GW+TA Sbjct: 4 REDGRADDELRTVKITRGFTSHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R+IGR+LR+ +DL+A+G I +DCDV+QA Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLIGRSLRACIDLAAIGENTIALDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TGA+VAL D + ++ ++ Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAVTGAYVALVDAVTYLR-AADLLSDPQPISCGIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L ++Q+ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQRQALAE 241 >gi|315079375|gb|EFT51373.1| ribonuclease PH [Propionibacterium acnes HL053PA2] Length = 254 Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 110/237 (46%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ SG VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLASGGCATLKQAQSEAL 250 >gi|291299064|ref|YP_003510342.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728] gi|290568284|gb|ADD41249.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728] Length = 241 Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 115/233 (49%), Positives = 152/233 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R + +R + R +K+ EGS LV+FGDT +L TA+++ VP W R + GW+TA Sbjct: 3 RPDNRAPDALRPVKFQRGWTKHPEGSVLVEFGDTRVLCTASVDTGVPRWRRGSGSGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R REAV G+ GGR+ EI R+IGRALRS +DL ALG I IDCDV+QA Sbjct: 63 EYSMLPRATNTRGDREAVKGKIGGRTHEISRLIGRALRSCLDLKALGENTITIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG++VAL D + + D + ++L VAA+S G++ G P++DL+Y E Sbjct: 123 DGGTRTAAITGSYVALQDAVTWLTDKKMARKPDKILTRSVAAVSVGVVGGTPVLDLNYVE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 DS+ DVD N V T G VEVQG+ E A F + A+L+LA +L Q Sbjct: 183 DSSADVDMNVVCTGDGDFVEVQGTGEEAVFDRSTLDALLDLATKGCKELTGAQ 235 >gi|15827593|ref|NP_301856.1| ribonuclease PH [Mycobacterium leprae TN] gi|221230070|ref|YP_002503486.1| ribonuclease PH [Mycobacterium leprae Br4923] gi|585906|sp|P37939|RNPH_MYCLE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808596|sp|B8ZR59|RNPH_MYCLB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|466905|gb|AAA50880.1| rnpH [Mycobacterium leprae] gi|13093144|emb|CAC31555.1| ribonuclease PH [Mycobacterium leprae] gi|219933177|emb|CAR71269.1| ribonuclease PH [Mycobacterium leprae Br4923] Length = 259 Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 104/238 (43%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR +++ GS L++FG T ++ TA+ E VP W + + GW+TA Sbjct: 4 RADGRLDDELRAVVITRGFTEHPAGSVLIEFGHTKVMCTASPTEGVPRWRKGSGKGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSERESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TGA+VAL D + ++ + + + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAVTGAYVALADAVTYLS-AAGRLLDPRPLSCAIAAVSVGVVDGRIRVDLSYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N + TD+G +VE+QG+ E ATF + +L++A L Q+D ++ Sbjct: 183 DSRAEVDMNVIATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFVAQRDALA 240 >gi|315079990|gb|EFT51966.1| ribonuclease PH [Propionibacterium acnes HL078PA1] Length = 254 Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 110/237 (46%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ SG VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250 >gi|289427808|ref|ZP_06429517.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165] gi|295131196|ref|YP_003581859.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137] gi|289158990|gb|EFD07185.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165] gi|291375935|gb|ADD99789.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137] gi|313773261|gb|EFS39227.1| ribonuclease PH [Propionibacterium acnes HL074PA1] gi|313793456|gb|EFS41507.1| ribonuclease PH [Propionibacterium acnes HL110PA1] gi|313801145|gb|EFS42408.1| ribonuclease PH [Propionibacterium acnes HL110PA2] gi|313808494|gb|EFS46959.1| ribonuclease PH [Propionibacterium acnes HL087PA2] gi|313812067|gb|EFS49781.1| ribonuclease PH [Propionibacterium acnes HL083PA1] gi|313812337|gb|EFS50051.1| ribonuclease PH [Propionibacterium acnes HL025PA1] gi|313819229|gb|EFS56943.1| ribonuclease PH [Propionibacterium acnes HL046PA2] gi|313821099|gb|EFS58813.1| ribonuclease PH [Propionibacterium acnes HL036PA1] gi|313823475|gb|EFS61189.1| ribonuclease PH [Propionibacterium acnes HL036PA2] gi|313827022|gb|EFS64736.1| ribonuclease PH [Propionibacterium acnes HL063PA1] gi|313829864|gb|EFS67578.1| ribonuclease PH [Propionibacterium acnes HL007PA1] gi|313834706|gb|EFS72420.1| ribonuclease PH [Propionibacterium acnes HL056PA1] gi|313837925|gb|EFS75639.1| ribonuclease PH [Propionibacterium acnes HL086PA1] gi|314925916|gb|EFS89747.1| ribonuclease PH [Propionibacterium acnes HL036PA3] gi|314960891|gb|EFT04992.1| ribonuclease PH [Propionibacterium acnes HL002PA2] gi|314963345|gb|EFT07445.1| ribonuclease PH [Propionibacterium acnes HL082PA1] gi|314974022|gb|EFT18118.1| ribonuclease PH [Propionibacterium acnes HL053PA1] gi|314975448|gb|EFT19543.1| ribonuclease PH [Propionibacterium acnes HL045PA1] gi|314979453|gb|EFT23547.1| ribonuclease PH [Propionibacterium acnes HL072PA2] gi|314984208|gb|EFT28300.1| ribonuclease PH [Propionibacterium acnes HL005PA1] gi|314988437|gb|EFT32528.1| ribonuclease PH [Propionibacterium acnes HL005PA2] gi|314988644|gb|EFT32735.1| ribonuclease PH [Propionibacterium acnes HL005PA3] gi|315083401|gb|EFT55377.1| ribonuclease PH [Propionibacterium acnes HL027PA2] gi|315086804|gb|EFT58780.1| ribonuclease PH [Propionibacterium acnes HL002PA3] gi|315089451|gb|EFT61427.1| ribonuclease PH [Propionibacterium acnes HL072PA1] gi|315097778|gb|EFT69754.1| ribonuclease PH [Propionibacterium acnes HL038PA1] gi|327325397|gb|EGE67202.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA2] gi|327328264|gb|EGE70028.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA3] gi|327443690|gb|EGE90344.1| ribonuclease PH [Propionibacterium acnes HL043PA1] gi|327449227|gb|EGE95881.1| ribonuclease PH [Propionibacterium acnes HL043PA2] gi|327450179|gb|EGE96833.1| ribonuclease PH [Propionibacterium acnes HL013PA2] gi|327451243|gb|EGE97897.1| ribonuclease PH [Propionibacterium acnes HL092PA1] gi|328756765|gb|EGF70381.1| ribonuclease PH [Propionibacterium acnes HL020PA1] gi|328761039|gb|EGF74591.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL099PA1] gi|332676073|gb|AEE72889.1| ribonuclease PH [Propionibacterium acnes 266] Length = 254 Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 110/237 (46%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ SG VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250 >gi|299535538|ref|ZP_07048859.1| ribonuclease PH [Lysinibacillus fusiformis ZC1] gi|298728738|gb|EFI69292.1| ribonuclease PH [Lysinibacillus fusiformis ZC1] Length = 249 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 112/237 (47%), Positives = 152/237 (64%), Gaps = 7/237 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R + + + EGS L++ G+T ++ TAT+E+KVP ++R GWITA Sbjct: 3 RFDGRNADGLRPVKIDSEYLLHPEGSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQA Sbjct: 63 EYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178 DGGTRTA+ITGA+VA+ + E KF ++ L AA S G++ I+DL+ Sbjct: 123 DGGTRTASITGAFVAMTQAIAKFAEEKPFEKFPVTDFL----AATSVGIVEEQGAILDLN 178 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 Y ED VD N VMT +G VE+QG+ E ATFS++ +L L + I L++LQK Sbjct: 179 YVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQLVELQK 235 >gi|308174534|ref|YP_003921239.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7] gi|307607398|emb|CBI43769.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7] gi|328554456|gb|AEB24948.1| ribonuclease PH [Bacillus amyloliquefaciens TA208] gi|328912859|gb|AEB64455.1| ribonuclease PH [Bacillus amyloliquefaciens LL3] Length = 245 Score = 211 bits (538), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 116/246 (47%), Positives = 160/246 (65%), Gaps = 13/246 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-----GHVAAISCGMLCGYP-I 174 ADGGTRTA+ITGA++A M + K S V+K ++AAIS GM + Sbjct: 121 ADGGTRTASITGAFLA-------MAIAAGKLVKSGVIKTSPVTDYLAAISVGMDKEEGLL 173 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 +DL+Y EDS +VD N +MT SG VE+QG+ E ATFS++ +L+LA+ I LI+ Q Sbjct: 174 LDLNYEEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQ 233 Query: 235 KDVISN 240 K+V+ + Sbjct: 234 KEVLGD 239 >gi|225021578|ref|ZP_03710770.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii ATCC 33806] gi|224945569|gb|EEG26778.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii ATCC 33806] Length = 242 Score = 211 bits (538), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 103/233 (44%), Positives = 154/233 (66%), Gaps = 2/233 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R I +TR + GS L+++G+T ++ TA+ E+ VP + +++ GW+TA Sbjct: 6 RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ +DL+ LG I IDCDV+QA Sbjct: 66 EYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA++AL D + H+ + L +AA+S G++ G+ +DL Y E Sbjct: 126 DGGTRTASITGAYIALADAIAHL--TAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 DS DVD N +MT G VE+QG+AE TFS++ AML+ A+ +LI+ Q Sbjct: 184 DSRADVDLNVIMTQEGKFVEIQGTAEHNTFSREELNAMLDYAEKGCKELIEAQ 236 >gi|269218709|ref|ZP_06162563.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211820|gb|EEZ78160.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str. F0332] Length = 245 Score = 211 bits (538), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 109/231 (47%), Positives = 147/231 (63%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR +S++R EGS LV FG T +L A+ E VP W ++T GW+TAEY MLPR+T Sbjct: 1 MRPVSISRGWLDAGEGSVLVSFGKTTVLCVASFTEGVPRWRKDTGLGWVTAEYSMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R RE+V G+ GGR+ EI R+IGRALR+ VD+ ALG I +DCDV++ADGGTRTA+I Sbjct: 61 DERSARESVKGKIGGRTHEISRLIGRALRACVDMRALGENTIQLDCDVLRADGGTRTASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TGA+ AL D + VL V+A+S G++ G P++DL Y EDS D D N Sbjct: 121 TGAFAALADAVDWAVGEGIVKPRRPVLSDTVSAVSVGVVDGRPVLDLPYEEDSRADTDMN 180 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 V T +G +E+QG+AERA FS+ +L+LA A L +QK+ ++ E Sbjct: 181 VVATGAGQFIEIQGTAERAPFSRGELGELLDLAAIGTAHLAAVQKEALTGE 231 >gi|320096011|ref|ZP_08027624.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977082|gb|EFW08812.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 255 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 103/212 (48%), Positives = 139/212 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +S+TR S EGS L++FG T +L A+ VP W R++ GW+TA Sbjct: 7 RADGRAPDQLRPVSITRGWSGTGEGSVLIEFGATRVLCVASFTTGVPRWKRDSGEGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+QEI R+IGR+LR VVD ALG + +DCDV++A Sbjct: 67 EYAMLPRATDQRSPRESVKGRVGGRTQEISRLIGRSLRGVVDTRALGENTVTLDCDVLRA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA++TGA++AL D + + ++VL V+AIS G++ G P++DL Y E Sbjct: 127 DGGTRTASVTGAYIALADAVAWAKRNGAVSPGAKVLTDSVSAISVGIVDGAPVLDLPYAE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 D D N V T G +EVQG+AE A FS+ Sbjct: 187 DVRAHTDMNVVQTGDGRFIEVQGTAEHAPFSR 218 >gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030] gi|300533569|gb|EFK54629.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030] Length = 245 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 156/235 (66%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR ++MR + +TR + GS LV+FG+T ++ TA+ EE VP + +++ GW+T Sbjct: 8 LRADGRALDEMRPVRITRGFTSNPAGSVLVEFGNTRVMCTASAEEGVPRFKKDSGEGWLT 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL+ALG I +DCDV+Q Sbjct: 68 AEYAMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLTALGENTIQLDCDVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + ++++ + L VAA+S G++ G +DL Y Sbjct: 128 ADGGTRTASITGAYVALADAIGYLKE--QGVVPGEPLLAPVAAVSVGIVDGRVCLDLPYE 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS +VD N VMTDSG VEVQG+ E F ++ ML+ A+ +LI QK Sbjct: 186 EDSRAEVDLNVVMTDSGDFVEVQGTGEHGLFGREQLGLMLDAAEKGCRELIDAQK 240 >gi|229062175|ref|ZP_04199499.1| Ribonuclease PH [Bacillus cereus AH603] gi|228717158|gb|EEL68834.1| Ribonuclease PH [Bacillus cereus AH603] Length = 259 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 15 MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 75 AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 134 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S + ++DL+Y Sbjct: 135 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGVVEEQGVVLDLNY 192 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ + Sbjct: 193 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 252 Query: 240 N 240 + Sbjct: 253 D 253 >gi|305681138|ref|ZP_07403945.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC 14266] gi|305659343|gb|EFM48843.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC 14266] Length = 242 Score = 211 bits (537), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 103/233 (44%), Positives = 154/233 (66%), Gaps = 2/233 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R I +TR + GS L+++G+T ++ TA+ E+ VP + +++ GW+TA Sbjct: 6 RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ +DL+ LG I IDCDV+QA Sbjct: 66 EYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA++AL D + ++ + L +AA+S G++ G+ +DL Y E Sbjct: 126 DGGTRTASITGAYIALADAIAYL--TAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 DS DVD N +MT G VE+QG+AE TFS+D AML+ A+ +LI+ Q Sbjct: 184 DSRADVDLNVIMTQEGKFVEIQGTAEHNTFSRDELNAMLDYAEKGCKELIEAQ 236 >gi|117928891|ref|YP_873442.1| ribonuclease PH [Acidothermus cellulolyticus 11B] gi|117649354|gb|ABK53456.1| RNAse PH [Acidothermus cellulolyticus 11B] Length = 240 Score = 211 bits (537), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 110/240 (45%), Positives = 153/240 (63%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +++R + TR +AEGS LV+FG T +L A++ E VP W + T GW+T Sbjct: 2 LRVDGRAADELRPVRFTRGWLLHAEGSVLVEFGRTRVLCAASVLEGVPKWRKGTGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R RE+V GR GGR+QEI R++GR+LR+ V+ + LG + +DCDV+Q Sbjct: 62 GEYAMLPRATTTRTDRESVRGRLGGRTQEISRLVGRSLRACVEPARLGENTVHLDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA++AL D + M D + + S L VAA+S G++ G P++DL Y Sbjct: 122 ADGGTRTAAITGAYLALADACRWMRD--HGWVTSDPLVRSVAAVSVGIVDGVPVLDLCYD 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED D N VMT G VE+QG+AE +D A+L LA A L +LQ+ ++ Sbjct: 180 EDVRAGTDMNVVMTGDGDFVEIQGTAEGTPLRRDEVDALLELATRGCARLTELQRTALAE 239 >gi|229019707|ref|ZP_04176514.1| Ribonuclease PH [Bacillus cereus AH1273] gi|229027352|ref|ZP_04183607.1| Ribonuclease PH [Bacillus cereus AH1272] gi|228733960|gb|EEL84699.1| Ribonuclease PH [Bacillus cereus AH1272] gi|228741614|gb|EEL91807.1| Ribonuclease PH [Bacillus cereus AH1273] Length = 245 Score = 211 bits (537), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGRGQAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S + ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQADKVSKIP--VKDYLAATSVGVVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|154686972|ref|YP_001422133.1| ribonuclease PH [Bacillus amyloliquefaciens FZB42] gi|166228265|sp|A7Z7C6|RNPH_BACA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|154352823|gb|ABS74902.1| Rph [Bacillus amyloliquefaciens FZB42] Length = 245 Score = 211 bits (536), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179 ADGGTRTA+ITGA++A+ + + S + S V ++AAIS GM ++DL+Y Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLVK-SGVIKTSPVTD-YLAAISVGMDKEEGLLLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N +MT SG VE+QG+ E ATFS++ +L+LA+ I LI+ QK+V+ Sbjct: 179 EEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQKEVL 237 >gi|312968015|ref|ZP_07782226.1| ribonuclease PH [Escherichia coli 2362-75] gi|312287274|gb|EFR15183.1| ribonuclease PH [Escherichia coli 2362-75] Length = 211 Score = 211 bits (536), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 110/212 (51%), Positives = 144/212 (67%), Gaps = 2/212 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 LV+FGDT +L TA++EE VP +++ GWITAEYGMLPRST R REA G+QGGR+ Sbjct: 2 LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTM 61 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+I RALR+ VDL ALG I +DCDV+QADGGTRTA+ITGA VAL D L + Sbjct: 62 EIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALNKL--VE 119 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 N + +KG VAA+S G++ G + DL+Y EDS + D N VMT+ G I+EVQG+AE Sbjct: 120 NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 179 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 F+ + +L LA+ I ++ QK ++N Sbjct: 180 EPFTHEELLTLLALARGGIESIVATQKAALAN 211 >gi|163942228|ref|YP_001647112.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4] gi|229013696|ref|ZP_04170825.1| Ribonuclease PH [Bacillus mycoides DSM 2048] gi|229135326|ref|ZP_04264120.1| Ribonuclease PH [Bacillus cereus BDRD-ST196] gi|229169222|ref|ZP_04296936.1| Ribonuclease PH [Bacillus cereus AH621] gi|226736888|sp|A9VIV4|RNPH_BACWK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|163864425|gb|ABY45484.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4] gi|228614288|gb|EEK71399.1| Ribonuclease PH [Bacillus cereus AH621] gi|228648149|gb|EEL04190.1| Ribonuclease PH [Bacillus cereus BDRD-ST196] gi|228747618|gb|EEL97492.1| Ribonuclease PH [Bacillus mycoides DSM 2048] Length = 245 Score = 211 bits (536), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S + ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGVVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|239827937|ref|YP_002950561.1| ribonuclease PH [Geobacillus sp. WCH70] gi|259494121|sp|C5D5M7|RNPH_GEOSW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|239808230|gb|ACS25295.1| ribonuclease PH [Geobacillus sp. WCH70] Length = 255 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 157/239 (65%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R + + + K+AEGS + GDT ++ TA++++KVP ++R GWIT Sbjct: 1 MRIDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L LG + + IDCDVIQ Sbjct: 61 AEYAMLPRATEQRNVRESSKGKLSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + +L + +AA S G+ + I+ DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLMEEKKLDELP--VNDFLAATSVGIDPEHGIILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ +VD N VMT +G VE+QG+ E ATFS++ +L+ A+ I LI +Q+ + Sbjct: 179 AEDARAEVDMNIVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTL 237 >gi|327332417|gb|EGE74153.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1] Length = 280 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 42 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 101 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 102 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 161 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 162 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 219 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 220 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 276 >gi|194017374|ref|ZP_03055986.1| ribonuclease PH [Bacillus pumilus ATCC 7061] gi|194011242|gb|EDW20812.1| ribonuclease PH [Bacillus pumilus ATCC 7061] Length = 242 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 3/238 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL R +++R+I + + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASIEDRVPPFLRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179 ADGGTRTA+ITGA+VA+ +Q + + + ++AAIS G+ ++DL+Y Sbjct: 121 ADGGTRTASITGAFVAMTLAIQKLR--AEGVIKQNPITDYLAAISVGIDSQQGLLLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS+ +VD N +MT +G VE+QG+ E ATFS++ +L+LA+ I +LI+ QK V Sbjct: 179 EEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAV 236 >gi|183601855|ref|ZP_02963224.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis HN019] gi|219682769|ref|YP_002469152.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011] gi|183218740|gb|EDT89382.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis HN019] gi|219620419|gb|ACL28576.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011] gi|289178068|gb|ADC85314.1| Ribonuclease PH [Bifidobacterium animalis subsp. lactis BB-12] Length = 246 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 104/222 (46%), Positives = 144/222 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TR + EGS L++ G+T ++ TAT + VP W +++ GW+TA Sbjct: 5 RADGRAYDELRPVRITRAFTDVPEGSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG I +DCDV+QA Sbjct: 65 EYSMLPRATAQRTDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + VL V+A+S G++ G P++DL Y E Sbjct: 125 DGGTRTASITGAHVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 DS D N MT SG VE+QG+AE FS++ +L+LA Sbjct: 185 DSRAMTDMNVAMTGSGKFVEIQGTAEHRPFSRNELGVLLDLA 226 >gi|157693251|ref|YP_001487713.1| ribonuclease PH [Bacillus pumilus SAFR-032] gi|166991082|sp|A8FFY6|RNPH_BACP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157682009|gb|ABV63153.1| tRNA nucleotidyltransferase [Bacillus pumilus SAFR-032] Length = 242 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 158/238 (66%), Gaps = 3/238 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL R +++R+I + + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASIEDRVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179 ADGGTRTA+ITGA+VA+ +Q + Q + ++AAIS G+ ++DL+Y Sbjct: 121 ADGGTRTASITGAFVAMTLAIQKLRAEGAIKQ--NPITDYLAAISVGIDSQQGLLLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS+ +VD N +MT +G VE+QG+ E ATFS++ +L+LA+ I +LI+ QK V Sbjct: 179 EEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAV 236 >gi|87308273|ref|ZP_01090414.1| ribonuclease PH [Blastopirellula marina DSM 3645] gi|87288830|gb|EAQ80723.1| ribonuclease PH [Blastopirellula marina DSM 3645] Length = 237 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 113/242 (46%), Positives = 152/242 (62%), Gaps = 12/242 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ NQ+RE+ + RR +K A GS L++ G T +L TA++E VP W++ + GWITA Sbjct: 3 RHDGRKANQLRELKIKRRFTKNAAGSVLIQTGATTVLCTASVESSVPPWLKGSGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R R+ GR+ EIQR+IGR+LR+V DL ALG + I +DCDV+ A Sbjct: 63 EYNMLPGSTPTRKSRKV-----DGRTTEIQRLIGRSLRAVADLEALGEQMITVDCDVLDA 117 Query: 122 DGGTRTAAITGAWVALHDCLQH--MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTA+ITGA++AL D LQ + D KF L VAA+S G++ G +DLDY Sbjct: 118 DGGTRTASITGAFIALVDALQTIVLPD-PKKFPLVD----SVAAVSVGLVNGAGALDLDY 172 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED VD N VMT SG VEVQG+ E ATF+++ ++ L K + L + Q + Sbjct: 173 IEDVDAAVDMNVVMTGSGKFVEVQGAGEEATFTEEELMKLIQLGKHGVKVLTEAQAKALG 232 Query: 240 NE 241 + Sbjct: 233 KK 234 >gi|238927868|ref|ZP_04659628.1| ribonuclease PH [Selenomonas flueggei ATCC 43531] gi|238884288|gb|EEQ47926.1| ribonuclease PH [Selenomonas flueggei ATCC 43531] Length = 248 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 158/241 (65%), Gaps = 13/241 (5%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R+ +Q+R + + R +YA+GS L++ G T ++ AT+EE+VP +++ T GW+TAEY M Sbjct: 7 RRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERVPFFLKGTGTGWVTAEYSM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP + R REAV G Q GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QADGGT Sbjct: 67 LPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182 RTA++TGA+VAL +E C++ + + + +VAA+S G+ P++DL Y ED Sbjct: 127 RTASVTGAFVAL------VEACASFYAKRGIFPVRDYVAAVSVGINAENEPLLDLCYEED 180 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK----DVI 238 S VD N VMT +G VEVQG+ E F++ A+L+L + I LI QK DV+ Sbjct: 181 SAAMVDMNIVMTGAGAFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKVALGDVL 240 Query: 239 S 239 S Sbjct: 241 S 241 >gi|82523716|emb|CAI78497.1| hypothetical protein [uncultured beta proteobacterium] Length = 243 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 116/235 (49%), Positives = 159/235 (67%), Gaps = 4/235 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R +S TR +K+AEGS LV GDT +L TA++ +K+P + + GW+TA Sbjct: 6 RPSGRAPDALRTLSFTRGFTKHAEGSVLVSMGDTRVLCTASVLDKIPPHKKGSGEGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+VVDL LG R + IDCDV+QA Sbjct: 66 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180 DGGTR A+I GA+VA+ D + + + +L++ L +AA+S G+ G+P++DLDY Sbjct: 126 DGGTRCASICGAYVAVADAVAGL---LREGKLAETPLNDSIAAVSVGVYEGHPVLDLDYI 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED D D N VMT SG IVE+QG+AE FS+ A+++LA I + Q+ Sbjct: 183 EDFECDTDMNVVMTGSGGIVEIQGTAEGVPFSRATLDALVDLAAAGIVQISTAQQ 237 >gi|51245125|ref|YP_065009.1| ribonuclease PH [Desulfotalea psychrophila LSv54] gi|61215901|sp|Q6ANS2|RNPH_DESPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|50876162|emb|CAG36002.1| probable ribonuclease PH [Desulfotalea psychrophila LSv54] Length = 236 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/236 (46%), Positives = 155/236 (65%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +R IS+ R V +A+ S L++ G+TH++ ++EE VP ++R + GWIT Sbjct: 3 MRQNNRTAESLRPISIERGVQLHADASVLIRMGNTHVICGVSVEESVPPFMRGSGKGWIT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP +T +R +RE +GR G R+ EIQR+IGR+LR +VDL +G R + +DCDV+ Sbjct: 63 AEYGMLPCATDSRYRRE-TNGRSG-RTMEIQRLIGRSLRMMVDLETIGERTLRVDCDVLN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +AL D + ++ +++ V AIS GM G ++DLDY Sbjct: 121 ADGGTRTASITGGALALRDAFTKLHTTGLLEKMPEIMP--VVAISVGMKDGQALLDLDYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS+ D DANFVM G +EVQ +AE FS D F AM +LA+ A+L++L +D Sbjct: 179 EDSSADADANFVMAGDGRWIEVQSTAEGRPFSHDQFLAMADLAQKGSAELLQLWRD 234 >gi|118462847|ref|YP_880792.1| ribonuclease PH [Mycobacterium avium 104] gi|166228290|sp|A0QD04|RNPH_MYCA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|118164134|gb|ABK65031.1| ribonuclease PH [Mycobacterium avium 104] Length = 259 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 106/237 (44%), Positives = 155/237 (65%), Gaps = 1/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR +++ GS L++FG T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAFVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+ +VD N V TD+G +VEVQG+ E ATF + +L+ A L Q++ + Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREAL 239 >gi|41408520|ref|NP_961356.1| ribonuclease PH [Mycobacterium avium subsp. paratuberculosis K-10] gi|254774377|ref|ZP_05215893.1| ribonuclease PH [Mycobacterium avium subsp. avium ATCC 25291] gi|61215988|sp|Q73X87|RNPH_MYCPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|41396876|gb|AAS04739.1| RphA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 259 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 106/237 (44%), Positives = 155/237 (65%), Gaps = 1/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR +++ GS L++FG T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAFVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+ +VD N V TD+G +VEVQG+ E ATF + +L+ A L Q++ + Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREAL 239 >gi|314956852|gb|EFT01006.1| ribonuclease PH [Propionibacterium acnes HL027PA1] Length = 254 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDVNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250 >gi|50843137|ref|YP_056364.1| ribonuclease PH [Propionibacterium acnes KPA171202] gi|50840739|gb|AAT83406.1| probable ribonuclease PH [Propionibacterium acnes KPA171202] Length = 254 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYKE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250 >gi|61215895|sp|Q6A759|RNPH_PROAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase Length = 244 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 66 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 126 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYKE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 184 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 240 >gi|300867701|ref|ZP_07112346.1| ribonuclease PH [Oscillatoria sp. PCC 6506] gi|300334284|emb|CBN57518.1| ribonuclease PH [Oscillatoria sp. PCC 6506] Length = 243 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 105/237 (44%), Positives = 158/237 (66%), Gaps = 4/237 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ NQ+R IS R +K+A GS L + GDT +L T +++ VP +++ T GW+TA Sbjct: 5 RPDGRQPNQLRPISFQREFTKFATGSVLARSGDTQVLCTVSIQPGVPKFLQFTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LRS +D++ LG R II+D DV+QA Sbjct: 65 EYRMLPGATPQRQERELM--KLSGRTQEIQRLIGRSLRSCLDMNLLGERTIIVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG +VAL D L + + + + S ++ VAA+S G+L G P +DL+Y E Sbjct: 123 DAGTRTTSITGGFVALADALDKLVK-NGELEQSPIVS-QVAAVSVGLLEGEPFLDLNYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D +VD N VM ++ I+E+QG+AE +FS+ +L++A+ I +L++ Q+ + Sbjct: 181 DVAAEVDFNVVMKENLSIIEMQGTAEEGSFSRTQLNQILDVAEKGIKELLEFQRQAL 237 >gi|145222946|ref|YP_001133624.1| ribonuclease PH [Mycobacterium gilvum PYR-GCK] gi|315443409|ref|YP_004076288.1| RNAse PH [Mycobacterium sp. Spyr1] gi|189043767|sp|A4T8F7|RNPH_MYCGI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145215432|gb|ABP44836.1| RNAse PH [Mycobacterium gilvum PYR-GCK] gi|315261712|gb|ADT98453.1| RNAse PH [Mycobacterium sp. Spyr1] Length = 260 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 159/237 (67%), Gaps = 1/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R +++TR + + GS LV+FG+T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVTITRGFTTHPAGSVLVEFGETRVMCTASVTEGVPRWRKGSGQGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPAATHDRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAFVALSDAVTYL-GAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYTE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS +VD N V TD+G +VE+QG+ E ATF + ML+ A L ++Q+ + Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAAL 239 >gi|282855012|ref|ZP_06264344.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139] gi|282581600|gb|EFB86985.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139] gi|314924268|gb|EFS88099.1| ribonuclease PH [Propionibacterium acnes HL001PA1] gi|315106207|gb|EFT78183.1| ribonuclease PH [Propionibacterium acnes HL030PA1] Length = 254 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250 >gi|315104464|gb|EFT76440.1| ribonuclease PH [Propionibacterium acnes HL050PA2] Length = 254 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250 >gi|289425019|ref|ZP_06426798.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187] gi|289154718|gb|EFD03404.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187] gi|313763384|gb|EFS34748.1| ribonuclease PH [Propionibacterium acnes HL013PA1] gi|313814692|gb|EFS52406.1| ribonuclease PH [Propionibacterium acnes HL059PA1] gi|313828238|gb|EFS65952.1| ribonuclease PH [Propionibacterium acnes HL063PA2] gi|314914538|gb|EFS78369.1| ribonuclease PH [Propionibacterium acnes HL005PA4] gi|314917606|gb|EFS81437.1| ribonuclease PH [Propionibacterium acnes HL050PA1] gi|314919638|gb|EFS83469.1| ribonuclease PH [Propionibacterium acnes HL050PA3] gi|314930289|gb|EFS94120.1| ribonuclease PH [Propionibacterium acnes HL067PA1] gi|314957645|gb|EFT01748.1| ribonuclease PH [Propionibacterium acnes HL002PA1] gi|314968972|gb|EFT13070.1| ribonuclease PH [Propionibacterium acnes HL037PA1] gi|315098009|gb|EFT69985.1| ribonuclease PH [Propionibacterium acnes HL059PA2] gi|315102645|gb|EFT74621.1| ribonuclease PH [Propionibacterium acnes HL046PA1] gi|315110460|gb|EFT82436.1| ribonuclease PH [Propionibacterium acnes HL030PA2] gi|327451224|gb|EGE97878.1| ribonuclease PH [Propionibacterium acnes HL087PA3] gi|327452581|gb|EGE99235.1| ribonuclease PH [Propionibacterium acnes HL083PA2] gi|328751977|gb|EGF65593.1| ribonuclease PH [Propionibacterium acnes HL025PA2] gi|328754779|gb|EGF68395.1| ribonuclease PH [Propionibacterium acnes HL087PA1] Length = 254 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250 >gi|304438692|ref|ZP_07398630.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368341|gb|EFM22028.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 248 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 158/241 (65%), Gaps = 13/241 (5%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R+ +Q+R + + R +YA+GS L++ G T ++ AT+EE+VP +++ T GW+TAEY M Sbjct: 7 RRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERVPFFLKGTGTGWVTAEYSM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP + R REAV G Q GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QADGGT Sbjct: 67 LPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182 RTA++TGA+VAL +E C++ + + + +VAA+S G+ P++DL Y ED Sbjct: 127 RTASVTGAFVAL------VEACASFYAKRGIFPVRDYVAAVSVGINAENEPLLDLCYEED 180 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK----DVI 238 S VD N VMT +G VEVQG+ E F++ A+L+L + I LI QK DV+ Sbjct: 181 SAAMVDMNIVMTGAGVFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKVALGDVL 240 Query: 239 S 239 S Sbjct: 241 S 241 >gi|28493589|ref|NP_787750.1| ribonuclease PH [Tropheryma whipplei str. Twist] gi|28572785|ref|NP_789565.1| ribonuclease PH [Tropheryma whipplei TW08/27] gi|28410918|emb|CAD67303.1| ribonuclease PH [Tropheryma whipplei TW08/27] gi|28476631|gb|AAO44719.1| ribonuclease PH [Tropheryma whipplei str. Twist] Length = 256 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 106/234 (45%), Positives = 150/234 (64%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R + R +++R + + R + YAEGS L+ FG+T +L AT + VP ++R + GWIT Sbjct: 20 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRS R RE+V G+ GRS EI R+IGR++R+++D AL II+DCDV+Q Sbjct: 80 AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+++AL+D L ++ K L V+A+S G++ +DLDY Sbjct: 140 ADGGTRTAAITGSYIALYDALVWAKN--QKILSKHPLTDSVSAVSVGLVGDQIFLDLDYS 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS D N V T SG +VE+QG+AE++ FS F M+ LAK L ++Q Sbjct: 198 EDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQ 251 >gi|314967394|gb|EFT11493.1| ribonuclease PH [Propionibacterium acnes HL082PA2] gi|315093635|gb|EFT65611.1| ribonuclease PH [Propionibacterium acnes HL060PA1] gi|327325475|gb|EGE67279.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL103PA1] Length = 244 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 66 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 126 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 184 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 240 >gi|288553636|ref|YP_003425571.1| ribonuclease PH [Bacillus pseudofirmus OF4] gi|288544796|gb|ADC48679.1| ribonuclease PH [Bacillus pseudofirmus OF4] Length = 251 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 111/236 (47%), Positives = 155/236 (65%), Gaps = 3/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ N++R + L K+ EGS L+ GDT ++ TA++EE+VP ++R GWIT Sbjct: 1 MRSDGRQVNELRAVQLDTDYLKHPEGSVLISMGDTKVICTASIEERVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+++DL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATEQRTIRESSKGKVTGRTMEIQRLIGRSLRTILDLDQLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VAL + S +K ++AA+S G+ + ++DL Y Sbjct: 121 ADGGTRTASITGAFVALSIAVNKA--VERGLIKSWPIKDYLAAVSVGVEPTHGEVLDLCY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED+ +VD N +MT + VE+QG+ E ATFS++ +L+LA+ I +LI QK Sbjct: 179 VEDAAAEVDMNVIMTGAHQFVELQGTGEEATFSREQLNQLLDLAEHGIDELISHQK 234 >gi|227504000|ref|ZP_03934049.1| ribonuclease PH [Corynebacterium striatum ATCC 6940] gi|227199394|gb|EEI79442.1| ribonuclease PH [Corynebacterium striatum ATCC 6940] Length = 245 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 156/234 (66%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + +++ GW+TA Sbjct: 9 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDLS LG I +DCDV+QA Sbjct: 69 EYSMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D +++++ S + L VAA+S G++ G +DL Y E Sbjct: 129 DGGTRTASITGAYVALADAIEYLK--SEGVVPGEPLLDPVAAVSVGIIDGQICLDLPYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N VM + G VE+QG+ E F +D +ML++A+ +LI+ QK Sbjct: 187 DSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRDELNSMLDVAQKGCEELIEAQK 240 >gi|254421303|ref|ZP_05035021.1| ribonuclease PH [Synechococcus sp. PCC 7335] gi|196188792|gb|EDX83756.1| ribonuclease PH [Synechococcus sp. PCC 7335] Length = 241 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 106/241 (43%), Positives = 157/241 (65%), Gaps = 4/241 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R RQ +Q+R R+ ++Y+ GS L G+T +L TA++ E VP +++++ GW+TA Sbjct: 5 RPDQRQPDQLRPFKFERQFTQYSAGSVLAHCGNTRVLCTASVLEGVPRFLKDSGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE + + GR+QEIQR+IGR+LR+ +D+ ALG R I ID DV+QA Sbjct: 65 EYRMLPGSTQTRKSREFM--KLSGRTQEIQRLIGRSLRAALDMEALGERTITIDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT +ITGA+VAL D + H+ +N+ S L+ +AA S G++ G P +DL+Y E Sbjct: 123 DGGTRTTSITGAYVALEDAIAHLIK-TNELTTSP-LRHQIAATSVGLIEGDPFLDLNYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D+D N VM + +EVQG+AE +F++ AML A+ I+ L+++QK +S Sbjct: 181 DFAADIDFNVVMNEKLEFIEVQGTAEAGSFTRSQLNAMLEYAEKGISQLMQIQKATLSES 240 Query: 242 V 242 + Sbjct: 241 L 241 >gi|61216045|sp|Q83FT1|RNPH_TROWT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61216046|sp|Q83HF6|RNPH_TROW8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase Length = 247 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 106/234 (45%), Positives = 150/234 (64%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R + R +++R + + R + YAEGS L+ FG+T +L AT + VP ++R + GWIT Sbjct: 11 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRS R RE+V G+ GRS EI R+IGR++R+++D AL II+DCDV+Q Sbjct: 71 AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+++AL+D L ++ K L V+A+S G++ +DLDY Sbjct: 131 ADGGTRTAAITGSYIALYDALVWAKN--QKILSKHPLTDSVSAVSVGLVGDQIFLDLDYS 188 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS D N V T SG +VE+QG+AE++ FS F M+ LAK L ++Q Sbjct: 189 EDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQ 242 >gi|296170279|ref|ZP_06851870.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895002|gb|EFG74721.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 259 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 105/238 (44%), Positives = 156/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR + + GS L++FG T ++ TA++ + VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTDGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAFVALADAVTYLA-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D+ +VD N V TD+G +VEVQG+ E ATF + +L++A L Q++ ++ Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALA 240 >gi|254445470|ref|ZP_05058946.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235] gi|198259778|gb|EDY84086.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235] Length = 252 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 109/243 (44%), Positives = 152/243 (62%), Gaps = 4/243 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59 R GR+ + +REIS + A GS LV FGDT ++ A LE++VP W+R N GW+ Sbjct: 6 RPDGRKCDALREISFQADFAANATGSVLVSFGDTKVICGAMLEKRVPGWMRAQNVSGGWL 65 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP ST +R +R+A G+Q GR EIQR+IGR+LR+V+DL L + +DCDV+ Sbjct: 66 TAEYSMLPYSTLDRKQRDASRGKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDCDVL 125 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA+ITGA++A +Q + D + + +AA+S G+ G P++DL Y Sbjct: 126 QADGGTRTASITGAYLAARLAVQKLIDAGTLKE--NPFRDSIAAVSVGIYEGEPVLDLPY 183 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED VD N VMT G VE+QG+ E ATFS+D ++ LAK I +L +Q ++ Sbjct: 184 IEDRDASVDFNVVMTGKGEFVELQGTGEEATFSEDELAKLIGLAKKGIKELSSMQAAFLT 243 Query: 240 NEV 242 + Sbjct: 244 QRL 246 >gi|328466632|gb|EGF37767.1| ribonuclease PH [Listeria monocytogenes 1816] Length = 228 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 107/230 (46%), Positives = 152/230 (66%), Gaps = 3/230 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K +A+ Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKELAN 228 >gi|227502998|ref|ZP_03933047.1| ribonuclease PH [Corynebacterium accolens ATCC 49725] gi|227076059|gb|EEI14022.1| ribonuclease PH [Corynebacterium accolens ATCC 49725] Length = 242 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 154/234 (65%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA Sbjct: 66 EYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H++ S + L +AA+S G++ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--SEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N VM +SG VE+QG+ E F ++ ML++A+ ++LI QK Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSELIAAQK 237 >gi|295399427|ref|ZP_06809409.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93] gi|294978893|gb|EFG54489.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93] Length = 256 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 157/239 (65%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R + + + K+AEGS + GDT ++ TA++++KVP ++R GWIT Sbjct: 1 MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L LG + + IDCDVIQ Sbjct: 61 AEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + +L + +AA S G+ + I+ DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLVEEKKLDELP--VNDFLAATSVGIDPEHGIILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ +VD N VMT +G VE+QG+ E ATFS++ +L+ A+ I LI +Q+ + Sbjct: 179 TEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTL 237 >gi|312110014|ref|YP_003988330.1| ribonuclease PH [Geobacillus sp. Y4.1MC1] gi|311215115|gb|ADP73719.1| ribonuclease PH [Geobacillus sp. Y4.1MC1] Length = 256 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 157/239 (65%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R + + + K+AEGS + GDT ++ TA++++KVP ++R GWIT Sbjct: 1 MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L LG + + IDCDVIQ Sbjct: 61 AEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179 ADGGTRTA+ITGA+VA+ + + +L + +AA S G+ + I+ DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLVEEKKLDELP--VNDFLAATSVGIDPEHGIILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ +VD N VMT +G VE+QG+ E ATFS++ +L+ A+ I LI +Q+ + Sbjct: 179 TEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTL 237 >gi|182416017|ref|YP_001821083.1| ribonuclease PH [Opitutus terrae PB90-1] gi|177843231|gb|ACB77483.1| ribonuclease PH [Opitutus terrae PB90-1] Length = 260 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 108/241 (44%), Positives = 153/241 (63%), Gaps = 4/241 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWI 59 R GR +Q+R I+ ++ YA GS LV FG T ++ A +E KVP+W+R + GW+ Sbjct: 17 RSDGRHPDQLRPITFEANIAPYATGSVLVSFGSTRVICAAMIEPKVPLWMRQQGVRGGWL 76 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP ST +R R+ G+ GR+ EIQR+IGR+LR+VVDL LG + IDCDV+ Sbjct: 77 TAEYSMLPYSTLDRKPRDISKGKLDGRTVEIQRLIGRSLRAVVDLMKLGENTLWIDCDVL 136 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA+ITGA++A +Q + D + K + VL VAA+S G+ G ++DL+Y Sbjct: 137 QADGGTRTASITGAYLATRLAVQRLVD-AGKLAENPVLD-SVAAVSAGVCGGQELLDLNY 194 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED +VDAN VMT G VE+Q S E ATF+ + ++ LA+ + ++ LQ ++ Sbjct: 195 VEDKDAEVDANIVMTGRGQFVEMQSSGEEATFTHEQLLSLTALAQKGLKEIAALQTAFLT 254 Query: 240 N 240 Sbjct: 255 K 255 >gi|145593656|ref|YP_001157953.1| ribonuclease PH [Salinispora tropica CNB-440] gi|189043773|sp|A4X3X5|RNPH_SALTO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145302993|gb|ABP53575.1| RNAse PH [Salinispora tropica CNB-440] Length = 241 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R ++LTR S + EGS LV+FG T +L TA++ E VP W + + GW+TA Sbjct: 3 RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I++DCDV+QA Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VALHD + + S + V+ VAA+S G++ G P +DL+Y Sbjct: 123 DGGTRTAAITGAYVALHDAVTWLAARRSLAGRPETVMHRSVAAVSVGVVAGEPRLDLNYA 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED++ +VD N V T +G VEVQG+ E FS+ A+L+LA +L + Q+ +S Sbjct: 183 EDASAEVDLNVVCTGAGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCVELAEAQRKALS 241 >gi|227548661|ref|ZP_03978710.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291] gi|227079275|gb|EEI17238.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291] Length = 246 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 153/234 (65%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR ++MR + +TR + GS LV+FG T ++ TA++E VP + +++ GW+TA Sbjct: 10 RLDGRAFDEMRPVRITRGFTTNPAGSVLVEFGATRVMCTASVEVGVPRFKKDSGEGWLTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ VDL+ LG I +DCDV+QA Sbjct: 70 EYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLAQLGENTIQLDCDVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + + + L VAA+S G++ G+ +DL Y E Sbjct: 130 DGGTRTASITGAYVALADAIAFLSE--RGLVPGEPLLAPVAAVSAGLVDGHVALDLPYEE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N VM DSG+ VE+QG+ E F + AML +A+ +LI+ QK Sbjct: 188 DSRAEVDLNVVMNDSGNFVEIQGTGEHGLFGRAELDAMLTVAEKGCRELIEAQK 241 >gi|291485267|dbj|BAI86342.1| ribonuclease PH [Bacillus subtilis subsp. natto BEST195] Length = 245 Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 112/243 (46%), Positives = 159/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179 ADGGTRTA+ITGA++A+ + + + S + +AAIS G+ I +DL+Y Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGT-IKTSPITD-FLAAISVGIDKEQGILLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +LI QK+V+ Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 Query: 240 NEV 242 + + Sbjct: 239 DSL 241 >gi|288921256|ref|ZP_06415540.1| ribonuclease PH [Frankia sp. EUN1f] gi|288347346|gb|EFC81639.1| ribonuclease PH [Frankia sp. EUN1f] Length = 256 Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 110/241 (45%), Positives = 152/241 (63%), Gaps = 7/241 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+ +Q+R+I++ R ++AEGS L+ G T +L A++ E VP W + + GW+T Sbjct: 2 IRVDGRKTDQLRDITIVRGWQEHAEGSALISAGLTRVLCAASVTEGVPRWRKGSGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I IDCDV+ Sbjct: 62 AEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLL 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + S + V A+S G++ G P++DL Y Sbjct: 122 ADGGTRTAAITGAYVALADACRWLGRPS-------AIVTSVCAVSVGIVKGVPMLDLAYT 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST D D N V T +G VEVQG+AE F + +LNLA L ++Q ++ Sbjct: 175 EDSTADTDMNVVCTGTGGFVEVQGTAEGTPFDRAALDELLNLATAGCNRLTEIQNAALAQ 234 Query: 241 E 241 Sbjct: 235 P 235 >gi|296137098|ref|YP_003644340.1| ribonuclease PH [Thiomonas intermedia K12] gi|294341380|emb|CAZ89797.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Thiomonas sp. 3As] gi|295797220|gb|ADG32010.1| ribonuclease PH [Thiomonas intermedia K12] Length = 243 Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 119/234 (50%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR + +R I++ R +++AEGS LV FG T +L TA++EE+VP R + GW+TAEYG Sbjct: 10 GRGLSALRAIAIERHFTRHAEGSVLVAFGHTRVLCTASVEERVPPHKRGSGQGWVTAEYG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T R +REA G+Q GR++EIQR+IGR+LR+V D SALG RQI +DCDV+QADGG Sbjct: 70 MLPRATHTRGEREAKRGKQQGRTEEIQRLIGRSLRAVFDFSALGERQITLDCDVLQADGG 129 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTAAITGA VA D Q + Q ++ VAA+S G+L +DLDY EDS Sbjct: 130 TRTAAITGAAVAAWDACQWLMAQGRIPQ--NPMRQLVAAVSVGLLGDDYRLDLDYAEDSQ 187 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N V T G ++EVQG+AE A FS+ M++LA+ IA+L+ LQ+ + Sbjct: 188 CDTDMNVVGTADGALIEVQGTAEGAPFSRQQLDGMIDLAQRGIAELVALQRQAL 241 >gi|16079889|ref|NP_390715.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168] gi|221310778|ref|ZP_03592625.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168] gi|221315103|ref|ZP_03596908.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320021|ref|ZP_03601315.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. JH642] gi|221324304|ref|ZP_03605598.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. SMY] gi|321312370|ref|YP_004204657.1| ribonuclease PH [Bacillus subtilis BSn5] gi|133188|sp|P28619|RNPH_BACSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|47168514|pdb|1OYP|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168515|pdb|1OYP|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168516|pdb|1OYP|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168517|pdb|1OYP|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168518|pdb|1OYP|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168519|pdb|1OYP|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168520|pdb|1OYR|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168521|pdb|1OYR|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168522|pdb|1OYR|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168523|pdb|1OYR|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168524|pdb|1OYR|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168525|pdb|1OYR|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|143444|gb|AAA22705.1| RNase PH [Bacillus subtilis] gi|1770059|emb|CAA99554.1| RNase PH [Bacillus subtilis] gi|2635302|emb|CAB14797.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168] gi|320018644|gb|ADV93630.1| ribonuclease PH [Bacillus subtilis BSn5] Length = 245 Score = 208 bits (529), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 111/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179 ADGGTRTA+ITGA++A+ + + + + +AAIS G+ I +DL+Y Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +LI QK+V+ Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 Query: 240 NEV 242 + + Sbjct: 239 DSL 241 >gi|306836769|ref|ZP_07469730.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726] gi|304567356|gb|EFM42960.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726] Length = 242 Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 154/234 (65%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA Sbjct: 66 EYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H++ + + L +AA+S G++ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N VM +SG VE+QG+ E F ++ ML++A+ ++LI QK Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSELIAAQK 237 >gi|52786716|ref|YP_092545.1| ribonuclease PH [Bacillus licheniformis ATCC 14580] gi|161760685|ref|YP_080129.2| ribonuclease PH [Bacillus licheniformis ATCC 14580] gi|319647246|ref|ZP_08001468.1| ribonuclease PH [Bacillus sp. BT1B_CT2] gi|81609007|sp|Q65GG2|RNPH_BACLD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|52349218|gb|AAU41852.1| Rph [Bacillus licheniformis ATCC 14580] gi|145903088|gb|AAU24491.2| ribonuclease PH [Bacillus licheniformis ATCC 14580] gi|317390593|gb|EFV71398.1| ribonuclease PH [Bacillus sp. BT1B_CT2] Length = 246 Score = 207 bits (528), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 109/241 (45%), Positives = 156/241 (64%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ N++R +++ + EGS L+ G T ++ A++E++VP ++R GWIT Sbjct: 1 MRYDGRKNNELRPVTMDLDFITHPEGSVLITVGGTKVICNASVEDRVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179 ADGGTRTA+ITGA+ A+ + + + ++ + +AA S G+ I+DL+Y Sbjct: 121 ADGGTRTASITGAFTAMALAVGRLVEKGALKEMP--ITDFLAATSVGIDKEKGLILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT G VE+QG+ E ATFS+ +L LA+ IA+L++ QK+V+ Sbjct: 179 QEDSAAEVDMNVVMTGEGRFVELQGTGEEATFSRSELDGLLELAEKGIAELLEKQKEVLG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|159036643|ref|YP_001535896.1| ribonuclease PH [Salinispora arenicola CNS-205] gi|189043771|sp|A8M4I1|RNPH_SALAI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157915478|gb|ABV96905.1| ribonuclease PH [Salinispora arenicola CNS-205] Length = 241 Score = 207 bits (528), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R ++LTR S + EGS LV+FG T +L TA++ E VP W + + GW+TA Sbjct: 3 RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VAL+D + + S + V+ VAA+S G++ G P +DL+Y Sbjct: 123 DGGTRTAAITGAYVALYDAVTWLAARRSLAGRPENVMHRSVAAVSVGVVAGEPRLDLNYD 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+T +VD N V T +G VEVQG+ E FS+ A+L+LA DL + Q+ +S Sbjct: 183 EDATAEVDLNVVCTGTGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCLDLAEAQRKALS 241 >gi|183984013|ref|YP_001852304.1| ribonuclease RphA [Mycobacterium marinum M] gi|183177339|gb|ACC42449.1| ribonuclease RphA [Mycobacterium marinum M] Length = 276 Score = 207 bits (528), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 108/238 (45%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+++++R + +TR ++ GS L++FG T ++ TA++ E VP W + + GW+TA Sbjct: 21 REDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVPRWRKGSGLGWLTA 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I +DCDV+QA Sbjct: 81 EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 140 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 141 DGGTRTAAITGAYVALADAVNYLA-AAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 199 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+ E ATF + +L++A L Q+D ++ Sbjct: 200 DSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQRDALA 257 >gi|118467865|ref|YP_889156.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155] gi|166228292|sp|A0R1W8|RNPH_MYCS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|118169152|gb|ABK70048.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155] Length = 259 Score = 207 bits (528), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 110/237 (46%), Positives = 156/237 (65%), Gaps = 1/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR + + GS LV+FG T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVVITRGFTSHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GGR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPAATHDRSDRESVKGRIGGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALSDAVTWLA-AAGRLSDPRPLSCAIAAVSVGVVDGRVRVDLPYSE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS +VD N V TD+G +VE+QG+ E ATF + ML+ A L LQ++ + Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAALGATEQLFVLQREAL 239 >gi|311741212|ref|ZP_07715036.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303382|gb|EFQ79461.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 242 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 153/234 (65%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA Sbjct: 66 EYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H++ + + L +AA+S G++ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N VM +SG VE+QG+ E F ++ ML++A+ +LI QK Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREELNEMLDVAQKGCRELIAAQK 237 >gi|126656098|ref|ZP_01727482.1| ribonuclease PH [Cyanothece sp. CCY0110] gi|126622378|gb|EAZ93084.1| ribonuclease PH [Cyanothece sp. CCY0110] Length = 240 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/241 (44%), Positives = 160/241 (66%), Gaps = 5/241 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ NQ+R ++ ++++ GS +++ G+T +L TA++E++VP ++ + GW+TA Sbjct: 5 RPDGRQPNQLRPVNFELNFTRFSAGSVVIECGETKVLCTASIEDRVPRFLLGSGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LRS +DL LG R I IDCDV+QA Sbjct: 65 EYRMLPSATQERQRRELL--KLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITG +VAL + + Q L+ VAAIS G++ G +DL+Y E Sbjct: 123 DAGTRTASITGGYVALGLAVNKLIKQGELIQ--SPLRFPVAAISVGLIEGEAFLDLNYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D+D N VMT++ ++EVQG+AE +F++ +L+LA+ I +L+ LQ V+ NE Sbjct: 181 DSKADIDFNVVMTENLDLIEVQGTAEENSFTRSQLNDILDLAEIGIKELVSLQNKVL-NE 239 Query: 242 V 242 V Sbjct: 240 V 240 >gi|320530746|ref|ZP_08031790.1| ribonuclease PH [Selenomonas artemidis F0399] gi|320137033|gb|EFW28971.1| ribonuclease PH [Selenomonas artemidis F0399] Length = 248 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 108/238 (45%), Positives = 154/238 (64%), Gaps = 9/238 (3%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R+ +Q+R + + R +Y GS L++ G T ++ +AT+EE+VP +++ + GW+TAEY M Sbjct: 7 RRPDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSATVEERVPFFLKGSGTGWVTAEYAM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP + R REA GRQ GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QADGGT Sbjct: 67 LPGAGTERTAREAARGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182 RTA+ITGA+VAL +E C+ + V + + AA+S G+ P++D+ Y ED Sbjct: 127 RTASITGAFVAL------VEACATFYTKRGVFPVRDYAAAVSVGIGAENTPLLDICYEED 180 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + VD N VMT +G +EVQG+ E FS+ A+L+L + I +LI +QK + Sbjct: 181 AQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRALGE 238 >gi|257056884|ref|YP_003134716.1| ribonuclease PH [Saccharomonospora viridis DSM 43017] gi|256586756|gb|ACU97889.1| RNAse PH [Saccharomonospora viridis DSM 43017] Length = 258 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/239 (46%), Positives = 161/239 (67%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR ++Q+RE+ +TR ++ GS L++ G+T +L A++ E VP W + GW+T Sbjct: 2 VRVDGRDDDQLREVRITRGFQQWPAGSVLIEVGNTRVLCAASVVEGVPRWRNGSGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T R RE+V GR GGR+ EI R+IGR+LRS +DL+ALG I+IDCDVIQ Sbjct: 62 AEYSMLPSATHTRGDRESVKGRIGGRTHEISRLIGRSLRSCIDLAALGENTIVIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VAL D + + + + + L V+A+S G++ G +DL Y Sbjct: 122 ADGGTRTAAITGGYVALADAITWL-GAAGRLADPKPLSAAVSAVSVGVVDGRVRLDLPYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N V TD+G ++EVQG+ E ATF++ ML+LA+ A+L ++Q + ++ Sbjct: 181 EDSRAEVDMNVVATDAGTLIEVQGTGEGATFTRSTLDKMLDLAQAGCAELARIQAEALA 239 >gi|255324313|ref|ZP_05365434.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum SK141] gi|255298643|gb|EET77939.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum SK141] Length = 242 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 153/234 (65%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA Sbjct: 66 EYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H++ + + L +AA+S G++ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDSIAAVSVGIIDGEICLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N VM +SG VE+QG+ E F ++ ML++A+ +LI QK Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREDLNEMLDVAQKGCRELIAAQK 237 >gi|269925889|ref|YP_003322512.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798] gi|269789549|gb|ACZ41690.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798] Length = 245 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 5/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+ N++R S+ + GS +++ G T +L A+++E VP ++ T GW+T Sbjct: 6 IRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAASIQEGVPKFLEGTGQGWLT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST R RE+ +GR GR+QEIQR+IGR+LR+ V L +G II+DCDV+Q Sbjct: 66 AEYSMLPASTQTRTPRESHTGRLQGRTQEIQRLIGRSLRAAVKLDQIGEITIIVDCDVLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VA L+ + + + +S VAA+S G++ G P++DL+Y Sbjct: 126 ADGGTRTASITGGYVATVLALRKIFPDTYRDLVSP-----VAAVSVGIVNGTPMLDLNYA 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST D D N V G +E+Q +AER +FS++ AML+LA IA+L++ Q V+S+ Sbjct: 181 EDSTADTDLNVVKNHLGDYIEIQATAERVSFSREELDAMLSLADKGIAELMESQSKVLSS 240 >gi|300859074|ref|YP_003784057.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41] gi|300686528|gb|ADK29450.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41] gi|302206777|gb|ADL11119.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231] gi|302331330|gb|ADL21524.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002] gi|308277022|gb|ADO26921.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19] Length = 247 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 150/234 (64%), Gaps = 3/234 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA+ E VP + R++ GW+TA Sbjct: 11 RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE++ G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA Sbjct: 71 EYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQA 130 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H++ LK VAA+S G++ G +DL Y E Sbjct: 131 DGGTRTASITGAYVALADAISHLQ--KQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYEE 188 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS DVD N +M + G VE+QG+ E TF +D +L+ A+ +L+ QK Sbjct: 189 DSRADVDMNVIMQN-GRFVEIQGTGEHNTFDRDELARILDFAEKGCTELVAAQK 241 >gi|311069329|ref|YP_003974252.1| ribonuclease PH [Bacillus atrophaeus 1942] gi|310869846|gb|ADP33321.1| ribonuclease PH [Bacillus atrophaeus 1942] Length = 245 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 115/246 (46%), Positives = 158/246 (64%), Gaps = 13/246 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-----GHVAAISCGMLCGYP-I 174 ADGGTRTA+ITGA++A+ + K S VLK +AAIS G+ + Sbjct: 121 ADGGTRTASITGAFLAMGIAI-------GKLVKSGVLKKTPVTDFLAAISVGIDKEQGLL 173 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 +DL+Y EDS +VD N +MT SG VE+QG+ E ATFS++ +L+LA+ I +LI Q Sbjct: 174 LDLNYTEDSAAEVDMNVIMTGSGRFVELQGTGEEATFSREDLDGLLSLAEKGIQELIDKQ 233 Query: 235 KDVISN 240 K V+ + Sbjct: 234 KAVLGD 239 >gi|307244059|ref|ZP_07526178.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678] gi|306492583|gb|EFM64617.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678] Length = 486 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 105/239 (43%), Positives = 159/239 (66%), Gaps = 6/239 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R +++TR + ++ GS L++ G+T ++ TA++E+ VP +++ T GWI+A Sbjct: 37 RPDGRQYDQLRPVNITRNYTMHSAGSVLIEVGNTKVICTASVEDGVPGFMKGTGKGWISA 96 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +R++ GR GRSQEIQR+IGR++RSVV+L LG R I IDCDVIQA Sbjct: 97 EYSMLPSATETRKRRDSSKGRVDGRSQEIQRLIGRSIRSVVNLEDLGERTIWIDCDVIQA 156 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSN--KFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTA+ITGA+VAL D L + + K L+ +L AA+S G++ +D+ Y Sbjct: 157 DGGTRTASITGAFVALADALYKLYQAGDIKKMPLTSML----AAVSVGVVDSQVCLDICY 212 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N +M + G +E+Q + E F++D +L A+ DL+++Q+ V+ Sbjct: 213 QEDSNAEVDTNIIMNNKGQFIEIQCTGEERPFTRDEMDKILEYAEKGNRDLMRIQRRVL 271 >gi|317050733|ref|YP_004111849.1| ribonuclease PH [Desulfurispirillum indicum S5] gi|316945817|gb|ADU65293.1| ribonuclease PH [Desulfurispirillum indicum S5] Length = 244 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 2/237 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R +++R I++TR +KYAEGS L+ G+T +L AT+++ VP ++ GW+TAEY M Sbjct: 5 RAPHELRPITITRNYTKYAEGSVLIAMGETIVLCNATVQKTVPRFLIGKDSGWVTAEYSM 64 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T R +RE+ GR GR+ EIQR+IGR+LRS++DL A+ I IDCDV+QADGGT Sbjct: 65 LPRATDVRNRRESQQGRPSGRTMEIQRLIGRSLRSIIDLHAMSGYTITIDCDVLQADGGT 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 R A++ GA++AL D + M + L+ VAAIS G+ +P+ DLDY EDS Sbjct: 125 RCASVNGAFIALADAVDSM--LAAGMIGESPLRSTVAAISVGIFNNWPLADLDYLEDSQA 182 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 VD N V T G VE+QG+ E FS+ +L LA D I + LQ + +S ++ Sbjct: 183 MVDMNVVATGKGEFVEIQGTGESRPFSRKDHDILLELALDGIGQISALQFEQLSAQI 239 >gi|324997302|ref|ZP_08118414.1| ribonuclease PH [Pseudonocardia sp. P1] Length = 245 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/225 (47%), Positives = 150/225 (66%), Gaps = 1/225 (0%) Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 +++TR K+ GS LV+FGDT +L A++ E VP W + + GW+TAEY MLP ST R Sbjct: 1 MTITRGFQKHPAGSVLVEFGDTKVLCAASVTEGVPRWRKGSGLGWVTAEYAMLPSSTDTR 60 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 RE+V G+ GGR+ EI R+IGR+LR+ +DL ALG I IDCDV+QADGGTRTAAITGA Sbjct: 61 SSRESVKGKIGGRTHEISRLIGRSLRACIDLRALGENTIAIDCDVLQADGGTRTAAITGA 120 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 +VAL D + + + K + + VAA+S G++ G +DL Y EDS +VD N V Sbjct: 121 YVALCDAVTWLGE-HGKLTDPKPISCQVAAVSVGVVDGRVRLDLPYEEDSRAEVDTNVVA 179 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T++G ++EVQG+ E ATF++ AML+ A IA + ++Q + + Sbjct: 180 TETGTLIEVQGTGEGATFARKTLDAMLDSALAGIAGIARMQIEAL 224 >gi|156936190|ref|YP_001440106.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894] gi|156534444|gb|ABU79270.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894] Length = 211 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 108/212 (50%), Positives = 146/212 (68%), Gaps = 2/212 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 LV+FGDT +L TA++EE VP +++ GWITAEYGMLPR+T R REA G+QGGR+ Sbjct: 2 LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTL 61 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+I R+LR+ VDL ALG I +DCDVIQADGGTRTA+ITGA VAL D L + + Sbjct: 62 EIQRLIARSLRAAVDLKALGEFTITLDCDVIQADGGTRTASITGACVALADALNALV-AA 120 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 K + + +KG VAA+S G++ G + DL+Y EDS + D N VMT+ G ++EVQG+AE Sbjct: 121 GKLK-TNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEG 179 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 F+ + +L LA+ I ++ QK ++N Sbjct: 180 EPFTHEELLDLLALARGGIESIVASQKAALAN 211 >gi|329947440|ref|ZP_08294644.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str. F0386] gi|328525190|gb|EGF52241.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str. F0386] Length = 264 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 107/241 (44%), Positives = 147/241 (60%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D+SALG I +DCDV+QA Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVSALGENTIALDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTAAITGA+VAL D + + VL ++AIS G++ G P +DL Y Sbjct: 128 DGGTRTAAITGAYVALADAVTWGTERGLIKARSGKPVLSDSLSAISVGIIDGVPCLDLPY 187 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D N V T G +EVQG+AE A F + ++L+LA L LQ+ ++ Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGSLLDLAATGNTRLAALQRRALA 247 Query: 240 N 240 Sbjct: 248 G 248 >gi|314982113|gb|EFT26206.1| ribonuclease PH [Propionibacterium acnes HL110PA3] gi|315090352|gb|EFT62328.1| ribonuclease PH [Propionibacterium acnes HL110PA4] Length = 254 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 108/237 (45%), Positives = 154/237 (64%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIECGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250 >gi|313895897|ref|ZP_07829451.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975322|gb|EFR40783.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str. F0430] Length = 248 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 107/238 (44%), Positives = 155/238 (65%), Gaps = 9/238 (3%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R+ +Q+R + + R +Y GS L++ G T ++ +A++EE+VP +++ + GW+TAEY M Sbjct: 7 RRHDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSASVEERVPFFLKGSGTGWVTAEYAM 66 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP + R REA+ GRQ GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QADGGT Sbjct: 67 LPGAGTERTAREAMRGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQADGGT 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182 RTA+ITGA+VAL +E C+ + V + + AA+S G+ P++D+ Y ED Sbjct: 127 RTASITGAFVAL------VEACATFYTKRGVFPVRDYTAAVSVGIGAENTPLLDICYEED 180 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + VD N VMT +G +EVQG+ E FS+ A+L+L + I +LI +QK + Sbjct: 181 AQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRALGE 238 >gi|108800808|ref|YP_641005.1| ribonuclease PH [Mycobacterium sp. MCS] gi|119869948|ref|YP_939900.1| ribonuclease PH [Mycobacterium sp. KMS] gi|126436406|ref|YP_001072097.1| ribonuclease PH [Mycobacterium sp. JLS] gi|123368907|sp|Q1B585|RNPH_MYCSS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228293|sp|A3Q379|RNPH_MYCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228294|sp|A1UJV2|RNPH_MYCSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|108771227|gb|ABG09949.1| RNAse PH [Mycobacterium sp. MCS] gi|119696037|gb|ABL93110.1| RNAse PH [Mycobacterium sp. KMS] gi|126236206|gb|ABN99606.1| RNAse PH [Mycobacterium sp. JLS] Length = 260 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 106/212 (50%), Positives = 148/212 (69%), Gaps = 1/212 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR + + GS LV+FG+T ++ TA++ E VP W + T GW+TA Sbjct: 4 REDGRLDDELRPVRITRGFTSHPAGSVLVEFGETRVMCTASVTEGVPRWRKGTGQGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GGR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPAATHDRSDRESVKGRVGGRTQEISRLIGRSLRACIDLNALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYLA-AAEKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYSE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 DS +VD N V TD+G +VE+QG+ E ATF + Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPR 214 >gi|258651924|ref|YP_003201080.1| ribonuclease PH [Nakamurella multipartita DSM 44233] gi|258555149|gb|ACV78091.1| ribonuclease PH [Nakamurella multipartita DSM 44233] Length = 246 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 109/239 (45%), Positives = 157/239 (65%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R ++ TR ++ GS LV+FG T +L A++ VP W + + GW+TA Sbjct: 3 RADGRADHELRPVTFTRGFQQHPAGSVLVEFGGTKVLCAASVTTGVPRWRKGSGLGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+ EI R+IGR+LR+ +DL +LG I +DCDV+QA Sbjct: 63 EYAMLPSATHERSDRESVKGRVGGRTHEISRLIGRSLRACLDLRSLGENTIAVDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + + Q L +AA+S G++ G +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAYLRE-RGQLADPQPLSCQIAAVSVGVVGGRVRLDLPYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ +VD N V TD G +VEVQG+AE AT+S+ AML+ A IA L ++Q+ ++ Sbjct: 182 DARAEVDMNVVATDVGTLVEVQGTAEGATYSRSTLDAMLDSALAGIATLTEMQRAALAG 240 >gi|255522701|ref|ZP_05389938.1| ribonuclease PH [Listeria monocytogenes FSL J1-175] Length = 229 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 104/221 (47%), Positives = 151/221 (68%), Gaps = 3/221 (1%) Query: 23 YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGR 82 + EGS L+ G+T ++ +A++E KVP ++R GWI+AEY MLPR+T R RE+ G+ Sbjct: 4 HPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESSKGK 63 Query: 83 QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142 GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQADGGTRTA+ITGA++A+ + Sbjct: 64 VTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVMAIA 123 Query: 143 HMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201 +++ + +K +AA S G+L G ++DL+Y EDS VD N +MT SG VE Sbjct: 124 KLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGAFVE 181 Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +QG+ E ATFS+ ++ L K I++LI++QK+ + ++V Sbjct: 182 LQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 222 >gi|296331615|ref|ZP_06874084.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675426|ref|YP_003867098.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23] gi|296151210|gb|EFG92090.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413670|gb|ADM38789.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23] Length = 245 Score = 205 bits (521), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 109/243 (44%), Positives = 157/243 (64%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179 ADGGTRTA+ITGA++A+ + + + + +AAIS G+ I +DL+Y Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +L+ QK+ + Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELVDKQKEELG 238 Query: 240 NEV 242 + + Sbjct: 239 DSL 241 >gi|326773720|ref|ZP_08233003.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505] gi|326636950|gb|EGE37853.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505] Length = 268 Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 106/241 (43%), Positives = 146/241 (60%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D++ALG I +DCDV+QA Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTAAITGA+VAL D + VL ++AIS G++ G P +DL Y Sbjct: 128 DGGTRTAAITGAYVALTDAVAWGTQRGLIKARPGKPVLSDSLSAISVGIIDGVPCLDLPY 187 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D N V T G +EVQG+AE A F + +L+LA + L LQ+ ++ Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALA 247 Query: 240 N 240 Sbjct: 248 G 248 >gi|172039437|ref|YP_001805938.1| ribonuclease PH [Cyanothece sp. ATCC 51142] gi|254808585|sp|B1WUL8|RNPH_CYAA5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|171700891|gb|ACB53872.1| ribonuclease PH [Cyanothece sp. ATCC 51142] Length = 240 Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 156/239 (65%), Gaps = 6/239 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ NQ+R ++ ++++ GS L + G+T +L TA++EE VP ++ + GW+TA Sbjct: 5 RPDGRQPNQLRPVNFELNFTRFSAGSVLAQCGETKVLCTASIEEYVPRFLLGSGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LRS +DL LG R I IDCDV+QA Sbjct: 65 EYRMLPSATQERQRRELL--KLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 D GTRT +ITG +VAL L + K +L Q L+ VAAIS G++ G +DL+Y Sbjct: 123 DAGTRTTSITGGYVALALALNKL---IKKGELIQSPLRFPVAAISVGLIEGEAFLDLNYP 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D+D N VMT + ++EVQG+AE +F++ +L+LA+ I +L+ LQ +S Sbjct: 180 EDSKADIDFNVVMTGNLDLIEVQGTAEENSFTRSQLNDILDLAELGIKELVSLQNQALS 238 >gi|325068398|ref|ZP_08127071.1| ribonuclease PH [Actinomyces oris K20] Length = 268 Score = 204 bits (520), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 106/242 (43%), Positives = 146/242 (60%), Gaps = 2/242 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D++ALG I +DCDV+QA Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTAAITGA+VAL D + VL ++AIS G++ G P +DL Y Sbjct: 128 DGGTRTAAITGAYVALADAVAWGTQRGLIKARPGRPVLSDSLSAISVGIIDGVPCLDLPY 187 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D N V T G +EVQG+AE A F + +L+LA + L LQ+ ++ Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALA 247 Query: 240 NE 241 Sbjct: 248 GP 249 >gi|271963272|ref|YP_003337468.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021] gi|270506447|gb|ACZ84725.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021] Length = 238 Score = 204 bits (520), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +++TR +AEGS LV+FG T +L A++++ VP W R + GW+TA Sbjct: 3 RADGRSPDQLRPVTITRGWLAHAEGSVLVEFGGTKVLCAASVQDSVPRWRRGSGQGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+ VD LG I+IDCDV+QA Sbjct: 63 EYAMLPRATNTRNDRESVRGKIGGRTHEISRLIGRSLRACVDYKTLGENSIVIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + M + K L V+A+S G++ P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWMRE--RKMCKGDPLIDSVSAVSVGVVGSTPLLDLCYTE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N VMT SG VEVQG+AE F + +L+L A+L +LQ++ ++ Sbjct: 181 DVAAETDMNVVMTGSGAFVEVQGTAEGKPFDRGALDELLDLGVAGCAELTRLQRETLA 238 >gi|301168382|emb|CBW27972.1| putative ribonuclease [Bacteriovorax marinus SJ] Length = 234 Score = 204 bits (519), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 107/234 (45%), Positives = 151/234 (64%), Gaps = 5/234 (2%) Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66 + +Q R+I T ++ YA GS + +FG+T + TAT+EE VP ++++ GWITAEY ML Sbjct: 5 ERSQPRDIKFTAGINPYAAGSVIAEFGNTKVHITATVEESVPRFLKDKGQGWITAEYSML 64 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P ST R +RE + GR+QEIQR+IGR+LR+++DL LG R I IDCDV+ ADGGTR Sbjct: 65 PSSTHTRNRRE--RSKVSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVLVADGGTR 122 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTI 185 T +I+GA+VAL ++ + + +K +AA+S G+ G I DL+Y EDST Sbjct: 123 TTSISGAYVALEMAVEKL--LESGLIEETPIKEPLAALSVGINSAGKVIADLNYDEDSTC 180 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + D N VMT SG +EVQG+AE FS+D A+L A + I + K Q+ V+S Sbjct: 181 ETDMNIVMTKSGKFIEVQGTAEGEAFSRDELNAILECATEAIQSVFKEQEKVLS 234 >gi|296122989|ref|YP_003630767.1| ribonuclease PH [Planctomyces limnophilus DSM 3776] gi|296015329|gb|ADG68568.1| ribonuclease PH [Planctomyces limnophilus DSM 3776] Length = 239 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 153/238 (64%), Gaps = 7/238 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI---RNTKHG 57 MR GRQ +++R I + R+ +K A GS L+ GDT LL TA+++E +P W + G Sbjct: 1 MRHDGRQPDELRPIRIQRQFTKVAPGSVLISAGDTTLLVTASIDETLPPWKAADPAAQKG 60 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 W+TAEY MLP ST R +RE + GRS EIQR+IGR+LR+ VD LG R I+ID + Sbjct: 61 WLTAEYCMLPGSTSPRKRRE--REKVDGRSTEIQRLIGRSLRACVDFETLGPRTIMIDVE 118 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+QADGGTRT ITG ++AL D + + D +K + VL +AA+S G+ G PI+DL Sbjct: 119 VLQADGGTRTLGITGGYIALCDAIATLGDKVSKDR--PVLTTSIAAVSVGISHGTPILDL 176 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DY EDS +VD N VMT SG +E+QG+AE +F++ L LA+ I L++LQ+ Sbjct: 177 DYIEDSQAEVDLNVVMTGSGEFIEIQGTAEGRSFTRAQLDQQLALAEKGIRQLMELQQ 234 >gi|187734903|ref|YP_001877015.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835] gi|187424955|gb|ACD04234.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835] Length = 270 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 111/242 (45%), Positives = 151/242 (62%), Gaps = 4/242 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW--IRNTKHGWI 59 R R +Q+R IS ++ A S LV FG T ++ T+EE VP W ++ + GW+ Sbjct: 12 RQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWL 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP ST +R +R+ +G+ GRS EIQR+IGR+LR+ VDL +G R I +DCDV+ Sbjct: 72 TAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCDVL 131 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA+ITGA VAL + + K S +K V+A+S G+L G ++DL Y Sbjct: 132 QADGGTRTASITGASVALAIAVNKLV-AEGKLAESP-MKRLVSAVSVGILEGEALLDLCY 189 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED +VD N VMTD G VEVQGS E A F+ D ML L + + ++ +LQ+ VI+ Sbjct: 190 VEDKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQRQVIA 249 Query: 240 NE 241 E Sbjct: 250 EE 251 >gi|113475741|ref|YP_721802.1| ribonuclease PH [Trichodesmium erythraeum IMS101] gi|110166789|gb|ABG51329.1| RNAse PH [Trichodesmium erythraeum IMS101] Length = 238 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 105/238 (44%), Positives = 153/238 (64%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ NQ+R IS +K+A S L KFG+T +L T++ VP ++ +T GW+TA Sbjct: 5 RPDGRKSNQLRPISFELDYTKFATSSVLTKFGETKVLCNVTIQPGVPKFLADTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ +D++ LG R II+D DV+QA Sbjct: 65 EYRMLPAATSERQQREFM--KLSGRTQEIQRLIGRSLRAALDMNLLGERTIIVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG +VA+ + + + D K + S +L VAA+S G+L P +DL+Y E Sbjct: 123 DAGTRTVSITGGFVAVANAISKLID-QGKLERSPILH-QVAAVSVGLLEKEPYLDLNYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D ++D N VM D ++EVQG+AE +FS+ +L+LA+ I L Q+ VIS Sbjct: 181 DVAAEIDFNVVMNDQPALIEVQGTAEIGSFSRTQLNQILDLAEAGIKKLFDAQRQVIS 238 >gi|15615630|ref|NP_243934.1| ribonuclease PH [Bacillus halodurans C-125] gi|21759418|sp|Q9K8D8|RNPH_BACHD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|10175690|dbj|BAB06787.1| ribonuclease PH [Bacillus halodurans C-125] Length = 257 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 152/239 (63%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ +++R IS+ + EGS L+ G+T ++ TA+LE++VP ++R GWIT Sbjct: 1 MRMDERKADELRPISIEINYLHHPEGSVLISIGNTKVICTASLEDRVPPFLRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRS++DL +G R + IDCDVIQ Sbjct: 61 AEYSMLPRATEQRNMRESTRGKVSGRTMEIQRLIGRALRSIIDLDKIGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRT +ITGA+VAL ++ +N + +AA+S G+ I+DL Y Sbjct: 121 ADGGTRTTSITGAFVALSLAMEKA--LANGAIQEWPIDDFLAAVSVGIDPKLGAILDLCY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ +VD N VMT G VE+QG+ E ATFS + +L LA I LI+ Q++ + Sbjct: 179 AEDAQAEVDMNVVMTGKGEYVELQGTGEEATFSHNQLLTILALADKGIKQLIEEQRNAL 237 >gi|188586564|ref|YP_001918109.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351251|gb|ACB85521.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF] Length = 246 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 103/234 (44%), Positives = 154/234 (65%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R+ +++R + + K+ EGS L+ GDT ++ +AT+E KVP +++ GW+TAEY M Sbjct: 5 RKVDEIRPVKIETDFVKHPEGSVLITVGDTKVICSATIESKVPSFLKGEGKGWVTAEYSM 64 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T +R REA G+ GGR+QEIQR+IGR+LRS+V+L LG R I +DCDVIQADGGT Sbjct: 65 LPRATESRNIREAAKGKLGGRTQEIQRLIGRSLRSMVNLKKLGERTIWLDCDVIQADGGT 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+V++ L + + +L ++G++AAIS G++ ++DLD ED Sbjct: 125 RTASITGAFVSMVLALNKLVEEKELSELP--VEGYLAAISVGIVNDEIMLDLDGKEDFQA 182 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N TD G VE+QG+ E FS++ ML+ A+ + L+++Q +S Sbjct: 183 DTDMNVAGTDKGEFVEIQGTGENHPFSKNEMEKMLSYAEKGMHALMEVQSQALS 236 >gi|33864812|ref|NP_896371.1| ribonuclease PH [Synechococcus sp. WH 8102] gi|61216015|sp|Q7U9I1|RNPH_SYNPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|33632335|emb|CAE06791.1| ribonuclease PH [Synechococcus sp. WH 8102] Length = 249 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 105/239 (43%), Positives = 152/239 (63%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++R S+ +A S +V+ G T +L + +LEE VP W R GW++A Sbjct: 8 RADGRGATELRPFSVDWDPMSFALSSLIVRTGRTAVLCSVSLEEDVPRWRRGNGCGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+V+D+ ALG R ++IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAW+AL + S ++ +AA+S G++ G P++DLDY E Sbjct: 126 DAGTRTASITGAWIALRRACDLLR--SQGVLTQDPIRQQLAAVSVGLIDGTPLLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS DVD N V G ++E+QG+AE+A FS+ AMLNLA+ + +L++ Q+ ++ Sbjct: 184 DSRADVDLNVVTAGDGRLLELQGTAEQAPFSRSELDAMLNLAESGLQELMQGQRHALAT 242 >gi|320534625|ref|ZP_08035070.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337] gi|320133145|gb|EFW25648.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337] Length = 268 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 108/245 (44%), Positives = 149/245 (60%), Gaps = 10/245 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVSFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D++ALG I +DCDV+QA Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQH------MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 DGGTRTAAITGA+VAL D + ++ K LS L +AIS G++ G P + Sbjct: 128 DGGTRTAAITGAYVALADAVAWGTERGLIKARPGKPALSDSL----SAISVGIIDGVPCL 183 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DL Y ED D N V T G +EVQG+AE A F + +L+LA + L LQ+ Sbjct: 184 DLPYEEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAAVGNSRLAALQR 243 Query: 236 DVISN 240 ++ Sbjct: 244 QALAG 248 >gi|254409968|ref|ZP_05023748.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420] gi|196183004|gb|EDX77988.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420] Length = 238 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 103/238 (43%), Positives = 151/238 (63%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R RQ NQ+R IS R +K+A S L K GDT +L T++ +P ++ T GW+TA Sbjct: 5 RPDHRQPNQLRPISFVRGFTKFAPASVLTKCGDTQVLCNVTIQPGIPRFLEGTGSGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+QEIQR+IGR+LR+ VDL+ALG R + +D DV+QA Sbjct: 65 EYRMLPGATPQRQTRELL--KLSGRTQEIQRLIGRSLRAAVDLTALGERTVFVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITG +VAL + L + + + + S + + +AA+S G+L G P +DL Y E Sbjct: 123 DAGTRTASITGGYVALAEALDKLVQ-AGELERSPI-RHQIAAVSVGLLAGEPFLDLKYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VM D +I+E+QG+AE +FS+ +++LA+ I +L+ Q+ +S Sbjct: 181 DVAAQTDFNIVMNDELNIIEIQGTAEAESFSRTQLNQLIDLAETGIQELLDAQRHALS 238 >gi|300813206|ref|ZP_07093574.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512659|gb|EFK39791.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 238 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 104/227 (45%), Positives = 143/227 (62%), Gaps = 2/227 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 RQ +++REI ++ A+GS L++ G+T ++ TA +EEKVP ++R + GW++AEY M Sbjct: 5 RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVSAEYSM 64 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R R+ G+Q GR EIQR+IGR+LR VDL ALG R I +DCDVI ADGGT Sbjct: 65 LPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVINADGGT 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RT +I G+++AL + NK +K V +IS G + G +VDLDY EDS Sbjct: 125 RTTSINGSYIALEMAVNKA--LKNKKLEVNPIKCKVGSISVGKVKGIKLVDLDYKEDSNA 182 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 DVD N VM D I+E+QG++ER TF+ + L A+ I D+ K Sbjct: 183 DVDLNLVMNDKFEIIEIQGTSERDTFTTEELAEFLKFAQIGIKDIFK 229 >gi|47168526|pdb|1OYS|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis Length = 245 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 108/243 (44%), Positives = 158/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP++T + +E+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179 ADGGTRTA+ITGA++A+ + + + + +AAIS G+ I +DL+Y Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +LI QK+V+ Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 Query: 240 NEV 242 + + Sbjct: 239 DSL 241 >gi|293393625|ref|ZP_06637935.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582] gi|291423960|gb|EFE97179.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582] Length = 211 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 108/212 (50%), Positives = 146/212 (68%), Gaps = 2/212 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 LV+FGDT +L TAT+E+ VP +++ GWITAEYGMLPRST +R REA G+QGGR+ Sbjct: 2 LVEFGDTKVLCTATVEDGVPRFLKGQGQGWITAEYGMLPRSTHSRNAREAAKGKQGGRTL 61 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+I R+LR+ VDL LG I +DCDV+QADGGTRTA+ITGA VAL D L + + Sbjct: 62 EIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTASITGACVALADALNALV-AA 120 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 K + + +KG VAA+S G++ G + DL+Y EDS + D N VM + G ++EVQG+AE Sbjct: 121 GKLK-ANPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEG 179 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 FS D A+L LA+ I + + QK +++ Sbjct: 180 EPFSHDELLALLALARGGIETIFQAQKAALAD 211 >gi|332295803|ref|YP_004437726.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796] gi|332178906|gb|AEE14595.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796] Length = 241 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 3/239 (1%) Query: 1 MRL-SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59 MRL R+ +++R I + + Y EGS L+ FG+T ++ A++E+KVP +++ + GWI Sbjct: 1 MRLDKSRKNDELRHIEIIKDFLIYPEGSVLISFGNTKVICNASVEDKVPPFLKGSGSGWI 60 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T+EY M+PR+T +R RE+ SG+ GR+QEIQR+IGR+LRS VDLS LG R I ID +VI Sbjct: 61 TSEYSMIPRATQDRNVRESTSGKISGRNQEIQRIIGRSLRSAVDLSLLGERTIYIDAEVI 120 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A+ITG +VAL L+ +++ + LK +VAA+S +L I+D ++ Sbjct: 121 QADAGTRCASITGGFVALVLALRKLKEYG--LIKTSPLKYYVAAVSVAVLNDEVILDPNF 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED DVD N + ++ I+E+QG+AE+ FS++ +L +A I +I +QK V+ Sbjct: 179 EEDVIADVDLNIIANENREIIEIQGTAEKKPFSKEKLNEILYIAYSGIEKIIAIQKKVL 237 >gi|319948537|ref|ZP_08022668.1| ribonuclease PH [Dietzia cinnamea P4] gi|319437784|gb|EFV92773.1| ribonuclease PH [Dietzia cinnamea P4] Length = 261 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R++++TR + + GS LV FG T ++ TA++ E VP W + + GW+TA Sbjct: 8 RADGRGVDELRDVTITRGFTSHPAGSVLVTFGQTRVMCTASVTEGVPRWRKGSGLGWLTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+ EI R++GR+LR+ +DLSALG I +DCDV+QA Sbjct: 68 EYAMLPAATHERSGRESVRGKVGGRTHEISRLVGRSLRACIDLSALGENTIALDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ S+ L G VAA+S G++ G+ + DL Y E Sbjct: 128 DGGTRTAAITGAYVALADAITWLQ--SSGAVTGNPLTGAVAAVSVGVVDGHVLCDLPYEE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD G ++EVQG+AE A F +D AML+ A+ L LQ++ ++ Sbjct: 186 DSRAEVDMNVVCTDGGKLIEVQGTAEGAAFGRDVLDAMLDSAQAGCERLFALQREALA 243 >gi|219850495|ref|YP_002464928.1| ribonuclease PH [Chloroflexus aggregans DSM 9485] gi|219544754|gb|ACL26492.1| ribonuclease PH [Chloroflexus aggregans DSM 9485] Length = 250 Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 108/225 (48%), Positives = 148/225 (65%), Gaps = 8/225 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R I++ + YAEGS L+ +G+T +L TAT+E+ VP W+R + GW+T Sbjct: 2 VRRDGRAPDQLRPITIEIGAAPYAEGSALIAYGNTRVLCTATIEDGVPAWMRGQQGGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 AEY MLPR+T R +RE R G GR+QEIQR+IGRALR+ +DL A+G R I IDCDV Sbjct: 62 AEYAMLPRATLQRSRRE----RNGPSGRTQEIQRLIGRALRAAIDLHAIGERTITIDCDV 117 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTRTA+I+G +VAL + H+ S + L +AA+S GM+ ++DL Sbjct: 118 LQADGGTRTASISGGYVALALAVDHLVR-SGAVETYPTLT-PLAAVSVGMIQDTLLLDLC 175 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 Y EDS D+D N VM + VEVQ +AER S+ A+L+LA Sbjct: 176 YEEDSQADLDCNVVMNINSAFVEVQATAERTPVSRAQLDALLDLA 220 >gi|332655285|ref|ZP_08421025.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16] gi|332515790|gb|EGJ45400.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16] Length = 237 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 106/238 (44%), Positives = 155/238 (65%), Gaps = 5/238 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R I + ++K+AEGSCL++ G+TH+L TA++E+K P + + GW+TA Sbjct: 3 RIDGRKNDELRPIEIIPNINKFAEGSCLIRCGNTHVLCTASVEDKPPRHVPEGE-GWVTA 61 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R +R+ + GRS EIQR+IGR+LRSVVD LG I IDCDV+Q Sbjct: 62 EYSMLPRANRERSRRDISKLKLNGRSAEIQRLIGRSLRSVVDRKKLGPWNITIDCDVLQG 121 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTA+ITG +VA+ Q M + K QLS+ + G+VAA+S G++ P++DL Y Sbjct: 122 DGGTRTASITGGFVAMMLAFQKMME---KGQLSEYPISGYVAAVSAGVVNDVPMLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ VD N VM D G ++E+QG+ E F+ + ++ L I +L QK + Sbjct: 179 EDSSAMVDLNCVMDDQGRLIEIQGTGEGRPFTLEEQQKLVELCAKGIQELQAAQKKAL 236 >gi|282882977|ref|ZP_06291581.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B] gi|281297184|gb|EFA89676.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B] Length = 238 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 104/227 (45%), Positives = 143/227 (62%), Gaps = 2/227 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 RQ +++REI ++ A+GS L++ G+T ++ TA +EEKVP ++R + GW++AEY M Sbjct: 5 RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVSAEYSM 64 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R R+ G+Q GR EIQR+IGR+LR VDL ALG R I +DCDVI ADGGT Sbjct: 65 LPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVINADGGT 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RT +I G+++AL + NK +K V +IS G + G +VDLDY EDS Sbjct: 125 RTTSINGSYLALEMAVNKA--LKNKRLEVNPIKCKVGSISVGKVKGIKLVDLDYKEDSNA 182 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 DVD N VM D I+E+QG++ER TF+ + L A+ I D+ K Sbjct: 183 DVDLNLVMNDKFEIIEIQGTSERDTFTAEELAEFLKFAQIGIKDIFK 229 >gi|169335158|ref|ZP_02862351.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM 17244] gi|169257896|gb|EDS71862.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM 17244] Length = 241 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 105/238 (44%), Positives = 153/238 (64%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R+ ++ RE+ +TR + Y +G L++ G+T ++ +A +E +VP ++R GWIT Sbjct: 2 VRSDNRKFDEKREVKITRNYTMYPDGCVLIESGNTKVICSAFIENRVPPFLRGEGTGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLP ST R +R+ + GRS EIQR+IGR+LRSVVDLS LG + I+IDCDVIQ Sbjct: 62 CEYSMLPSSTQTRKQRDINRLKLDGRSSEIQRLIGRSLRSVVDLSILGEKTIMIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGA+VAL+D L M + +L L +AAIS G++ P++DL Y Sbjct: 122 ADGGTRVASITGAFVALYDALSKMVEKGEIERLP--LTSFLAAISVGIVENEPLLDLCYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VM + G +E+ + E+ ++ +L LAK I +LI++QK+V+ Sbjct: 180 EDSNAIADMNVVMNEYGEFIELGMTGEKRPIKEEELNKLLILAKKGIKELIEIQKEVL 237 >gi|283780454|ref|YP_003371209.1| ribonuclease PH [Pirellula staleyi DSM 6068] gi|283438907|gb|ADB17349.1| ribonuclease PH [Pirellula staleyi DSM 6068] Length = 247 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 111/234 (47%), Positives = 154/234 (65%), Gaps = 6/234 (2%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R +++R I + R +K + GS L++ G+T +L TA+++ KVP W+ GWITAEY M Sbjct: 3 RTASELRPIKIKRNYTKMSPGSVLIEAGETVVLCTASVDAKVPDWLAGKGKGWITAEYNM 62 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R +RE + GR+ EIQR+IGR+LR+V+DL ALG R + +DCDV+QADGGT Sbjct: 63 LPHSTRPRKQRE--RAKTDGRTTEIQRLIGRSLRAVIDLEALGERLLQVDCDVLQADGGT 120 Query: 126 RTAAITGAWVALHDCLQHME-DCSNKFQLS---QVLKGHVAAISCGMLCGYPIVDLDYGE 181 RTA+ITGA++A+ D ++ ++ D +N L VL VAAIS G++ G P +DL+Y + Sbjct: 121 RTASITGAFIAVVDAIRSIKGDANNPKNLPITRPVLLDSVAAISVGIVEGKPTLDLEYVQ 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D DVD N VMT SG VE+QG+ E ATF A+L LA+ I L +QK Sbjct: 181 DVDADVDMNVVMTGSGKFVEIQGTGEEATFDDAQLAALLKLARQGITQLTTIQK 234 >gi|227833921|ref|YP_002835628.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975] gi|262184924|ref|ZP_06044345.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975] gi|227454937|gb|ACP33690.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975] Length = 242 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 102/234 (43%), Positives = 152/234 (64%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TR + GS LV+FG+T ++ TA++E VP + +++ GW+TA Sbjct: 6 RADGRALDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ VDLS LG I +DCDV+QA Sbjct: 66 EYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++++ + L +AA+S G++ G+ +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAYLKE--EGVVPGEPLLDPIAAVSVGIIDGHVCLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS +VD N VM + G VE+QG+ E F + ML++A+ A LI QK Sbjct: 184 DSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRAELNDMLDVAQAGCAQLIDAQK 237 >gi|226226977|ref|YP_002761083.1| ribonuclease PH [Gemmatimonas aurantiaca T-27] gi|226090168|dbj|BAH38613.1| ribonuclease PH [Gemmatimonas aurantiaca T-27] Length = 247 Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 112/239 (46%), Positives = 145/239 (60%), Gaps = 8/239 (3%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R +R +SL R YAEGSCL+ FG T +L A++E VP W + + GW+TAEY M Sbjct: 13 RSNEALRPVSLERGAVLYAEGSCLISFGKTRVLCAASVETGVPGWKKGSGEGWVTAEYAM 72 Query: 66 LPRSTGNRVKREAVSGRQ--GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 LPR+T R RE RQ GGR+QEIQR+IGR++R+++D G I +DCDV+QADG Sbjct: 73 LPRATRTRSSRE----RQQVGGRTQEIQRLIGRSVRAMLDDYRFGEFTIKVDCDVLQADG 128 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTAAITGA VA+ D M S ++ +K VAAIS GM+ G +DLDY ED Sbjct: 129 GTRTAAITGACVAVQDAFNWM--VSTGRIIASPVKRRVAAISVGMVDGEVRLDLDYEEDV 186 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 VD N VM+ G VEVQG+ E TFS+ +L A I L++ Q V++ V Sbjct: 187 RAGVDMNVVMSSEGRFVEVQGTGEHGTFSRQELDGLLGTAVAGIEQLLEAQTRVLAGPV 245 >gi|291005562|ref|ZP_06563535.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338] Length = 237 Score = 201 bits (512), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 103/224 (45%), Positives = 146/224 (65%), Gaps = 1/224 (0%) Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +TR + GS LV+FG T +L A+++E VP W + GW+TAEY MLP ST R Sbjct: 3 ITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTAEYAMLPSSTNTRSA 62 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE+V GR GGR+ EI R++GR+LR+ +DL+ALG I +DCDVIQADGGTRTAAITGA+V Sbjct: 63 RESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQADGGTRTAAITGAYV 122 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL D + + + + + L +AA+S G++ G +DL Y EDS +VD N V TD Sbjct: 123 ALADAITWLS-AAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATD 181 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 G +VEVQG+ E ATF++ M++ A ++L ++Q + ++ Sbjct: 182 HGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALA 225 >gi|304440366|ref|ZP_07400255.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371118|gb|EFM24735.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 435 Score = 201 bits (512), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 98/235 (41%), Positives = 152/235 (64%), Gaps = 2/235 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R+ N++R++ +T +GSCLV+ G+T ++ TA +E+KVP +++ GW++AEY M Sbjct: 4 REFNKIRDLKITPNYLSSPDGSCLVEMGNTKIIVTAMIEDKVPFFLKGQGVGWLSAEYSM 63 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P ST R R+ G+ GRSQEIQR+IGRALRS +DLS +G R I IDCDVI ADGGT Sbjct: 64 IPGSTQRRKPRDISRGKIDGRSQEIQRLIGRALRSAIDLSLIGERTIWIDCDVISADGGT 123 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RT ++TG +VAL + K + +K VAAIS G + G +VDLD+ +DS Sbjct: 124 RTLSVTGGFVALKLAVNKY--LKEKLIFANPIKRKVAAISLGKVYGRLMVDLDFNDDSKA 181 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DVD N VM + +I+E+QG++E++ ++ L+++ I +++K+ +D + + Sbjct: 182 DVDMNIVMDEDHNIIEIQGTSEKSPLKIKELEELVKLSEETIDEIMKIVEDTVPS 236 >gi|168702929|ref|ZP_02735206.1| RNase PH [Gemmata obscuriglobus UQM 2246] Length = 243 Score = 201 bits (512), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 110/234 (47%), Positives = 151/234 (64%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R + R +RE+S TR ++ A GS LVK G T +L T +E KVP ++ GW+TA Sbjct: 3 RPNDRSPTALRELSFTRGYTRPAPGSVLVKMGRTTVLCTCCVEPKVPDFLVGKGKGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLP ST R R+ +G+ GRS EIQR+IGR+LR+VV+L LG R + IDCDV++A Sbjct: 63 EYGMLPGSTHTRKPRDK-AGKVDGRSVEIQRLIGRSLRAVVNLDKLGERTLWIDCDVLEA 121 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA D + ++ +++VL VAA+S G++ G +DL+Y E Sbjct: 122 DGGTRTASITGAFVAAVDAINSIKSLLT-VPVTEVLTDSVAAVSVGLIEGEERLDLEYVE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D DVD N VMT SG I+EVQGS E ATF++ +++L + I + QK Sbjct: 181 DRDADVDMNLVMTGSGKIIEVQGSGEEATFTRKQLDRLVDLGEAGIQAITLAQK 234 >gi|118619118|ref|YP_907450.1| ribonuclease PH [Mycobacterium ulcerans Agy99] gi|166228296|sp|A0PUG0|RNPH_MYCUA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|118571228|gb|ABL05979.1| ribonuclease RphA [Mycobacterium ulcerans Agy99] Length = 259 Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 107/238 (44%), Positives = 156/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+++++R + +TR ++ GS L++FG T ++ TA++ E V W + + GW+TA Sbjct: 4 REDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVSRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVNYLA-AAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+ E ATF + +L++A L Q D ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQCDALA 240 >gi|205374390|ref|ZP_03227188.1| ribonuclease PH [Bacillus coahuilensis m4-4] Length = 247 Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 7/241 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +++R +++ + EGS L+ G T ++ TA++EE+VP ++R GW+ Sbjct: 1 MRRNERKVDELRPVTIETDYLIHPEGSVLISIGQTKVICTASVEERVPPFMRGEGKGWVN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+I R+LR+VVDL+ALG R I IDCDVIQ Sbjct: 61 AEYSMLPRATEKRTIRESSKGKVTGRTMEIQRLISRSLRAVVDLTALGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDL 177 ADGGTRTA+ITGA++A+ + + E +F ++ L +AIS G+ I+DL Sbjct: 121 ADGGTRTASITGAFIAMTIAIDKISKEKKLPRFPVNDFL----SAISVGIDREKTVILDL 176 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y EDST VD N VMT SG VEVQG+ E ATF+ +L++A+ +L+K QK+ Sbjct: 177 SYDEDSTARVDMNVVMTGSGEFVEVQGTGEEATFTMSELQQLLSVAEKGNRELMKFQKEA 236 Query: 238 I 238 + Sbjct: 237 L 237 >gi|158335996|ref|YP_001517170.1| ribonuclease PH [Acaryochloris marina MBIC11017] gi|189043752|sp|B0CAB9|RNPH_ACAM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|158306237|gb|ABW27854.1| ribonuclease PH [Acaryochloris marina MBIC11017] Length = 239 Score = 201 bits (510), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 104/240 (43%), Positives = 154/240 (64%), Gaps = 6/240 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R I R + +A GS L + G T +L T +++ VP ++ +T GW+TA Sbjct: 5 RPDGRQPDQLRPIRFHREYTHFAAGSVLAECGQTKVLCTVSVQPGVPRFLEDTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R +RE + + GR+QEIQR+IGR+LR+ +DL ALG R +++D DV+QA Sbjct: 65 EYRMLPGSTPERQRRELM--KLSGRTQEIQRLIGRSLRAALDLQALGERTLVVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 D GTRT +ITG +VAL D + + +K ++ Q ++ HVAA+S G+L G P +DL+Y Sbjct: 123 DAGTRTTSITGGFVALVDAVNQL---VSKGEIPQSPIRHHVAAVSVGLLEGQPFLDLNYP 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED VD N V T+ ++EVQG+AE T + ML+LA+ I LI+ Q+ +++ Sbjct: 180 EDVGAAVDLNVVATEQLELLEVQGTAEEGTLPRPQLNQMLDLAEIGIQQLIEAQRQALAS 239 >gi|289672870|ref|ZP_06493760.1| ribonuclease PH [Pseudomonas syringae pv. syringae FF5] Length = 186 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 98/182 (53%), Positives = 132/182 (72%), Gaps = 1/182 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DS 183 DS Sbjct: 182 DS 183 >gi|254819170|ref|ZP_05224171.1| ribonuclease PH [Mycobacterium intracellulare ATCC 13950] Length = 259 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 106/240 (44%), Positives = 156/240 (65%), Gaps = 1/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR + + GS L++FG T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAFVALADAVTYL-GAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D+ +VD N V TD+G +VEVQG+ E ATF + +L++A L Q++ ++ Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALAQP 242 >gi|241190345|ref|YP_002967739.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195751|ref|YP_002969306.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140] gi|240248737|gb|ACS45677.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250305|gb|ACS47244.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793332|gb|ADG32867.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis V9] Length = 230 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 100/210 (47%), Positives = 137/210 (65%) Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 + +TR + EGS L++ G+T ++ TAT + VP W +++ GW+TAEY MLPR+T R Sbjct: 1 MRITRAFTDVPEGSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTAEYSMLPRATAQR 60 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 RE+V G+ GGR+ EI R+IGR LR V+D+ ALG I +DCDV+QADGGTRTA+ITGA Sbjct: 61 TDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQADGGTRTASITGA 120 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 VAL D L + + VL V+A+S G++ G P++DL Y EDS D N M Sbjct: 121 HVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVEDSRAMTDMNVAM 180 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 T SG VE+QG+AE FS++ +L+LA Sbjct: 181 TGSGKFVEIQGTAEHRPFSRNELGVLLDLA 210 >gi|327542216|gb|EGF28707.1| ribonuclease PH [Rhodopirellula baltica WH47] Length = 246 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 108/235 (45%), Positives = 145/235 (61%), Gaps = 4/235 (1%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 S R +Q+R + + + S L K G T +L TA++E VP W+ GW+TAEY Sbjct: 7 SARPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 MLP ST R KR SG+ GR+ EIQR+IGR+LR+++DL ALG R I +DCDV+QADG Sbjct: 67 NMLPGSTSPR-KRRDRSGKVDGRTTEIQRLIGRSLRAIIDLHALGERSITVDCDVLQADG 125 Query: 124 GTRTAAITGAWVALH---DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 GTRTA+ITG ++AL L + + + + VL+ VAAIS G++ ++DLDY Sbjct: 126 GTRTASITGGYIALSLAVSQLASIPELAPPIDPTAVLRDSVAAISVGVIGEDVVLDLDYR 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS DVD N +MT SG +E+QG+ E ATF +L L K IA+L KLQK Sbjct: 186 LDSAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQK 240 >gi|332711140|ref|ZP_08431074.1| RNAse PH [Lyngbya majuscula 3L] gi|332350122|gb|EGJ29728.1| RNAse PH [Lyngbya majuscula 3L] Length = 234 Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 103/234 (44%), Positives = 153/234 (65%), Gaps = 4/234 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R RQ +Q+R I R ++YA GS L G+T +L T T++E+VP ++++T GW+TA Sbjct: 5 RPDNRQPDQLRPILFEREFTRYAPGSVLAHCGETKVLCTVTVQEEVPRFLKDTGSGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ VDL ALG R + +D DVIQA Sbjct: 65 EYRMLPGATPERQRRELL--KLSGRTQEIQRLIGRSLRAAVDLKALGERTLTVDADVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG +VAL D + + + + S ++ VAA+S G+L G P +DL+Y E Sbjct: 123 DAGTRTTSITGGYVALVDAVDKLVK-TGVLERSPLIH-QVAAVSVGLLEGEPFLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D +VD N VM D I+EVQG+AE +++ +++LA+ I +L++ Q+ Sbjct: 181 DVAAEVDFNVVMNDEMGIIEVQGTAESGAYTRHQLNQLIDLAEKGIKELLEAQR 234 >gi|32473863|ref|NP_866857.1| ribonuclease PH [Rhodopirellula baltica SH 1] gi|61216016|sp|Q7URE2|RNPH_RHOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|32444399|emb|CAD74398.1| ribonuclease PH [Rhodopirellula baltica SH 1] Length = 246 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 109/235 (46%), Positives = 144/235 (61%), Gaps = 4/235 (1%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 S R +Q+R + + + S L K G T +L TA++E VP W+ GW+TAEY Sbjct: 7 SARPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 MLP ST R KR SG+ GR+ EIQR+IGR+LR++VDL ALG R I +DCDV+QADG Sbjct: 67 NMLPGSTSPR-KRRDRSGKVDGRTTEIQRLIGRSLRAIVDLHALGERSITVDCDVLQADG 125 Query: 124 GTRTAAITGAWVALH---DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 GTRTA+ITG ++AL L + + + VL+ VAAIS G++ ++DLDY Sbjct: 126 GTRTASITGGYIALSLAVSQLAAIPELDPPVDPTAVLRDSVAAISVGVIGEDVVLDLDYR 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS DVD N +MT SG +E+QG+ E ATF +L L K IA+L KLQK Sbjct: 186 LDSAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQK 240 >gi|33864097|ref|NP_895657.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313] gi|61216018|sp|Q7V4V8|RNPH_PROMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|33635681|emb|CAE22005.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313] Length = 244 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/241 (43%), Positives = 152/241 (63%), Gaps = 6/241 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + MR + +T +A S +++ G T +L + +EE VP W + GW++A Sbjct: 8 RADGRLADVMRPLQITWDPMGFALSSLIIRTGRTSVLCSVCVEEGVPRWRKGQGKGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+V+D++ALG + IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQNRELL--KLSGRTQEIQRLIGRSLRAVIDMAALGETTLRIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVAL-HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 D GTRTA+ITGAW+AL C + +E Q + VAA+S G++ YP++DLDY Sbjct: 126 DAGTRTASITGAWIALKRGCDRLLE---QGLLTHQPVIEQVAAVSVGLVESYPLLDLDYS 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DVD N VM +GH++E+QG+AE A FS++ +LNLA+ + L Q+ + Sbjct: 183 EDSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQAFQRSALMQ 242 Query: 241 E 241 E Sbjct: 243 E 243 >gi|56750485|ref|YP_171186.1| ribonuclease PH [Synechococcus elongatus PCC 6301] gi|81299882|ref|YP_400090.1| ribonuclease PH [Synechococcus elongatus PCC 7942] gi|61215786|sp|Q5N4V3|RNPH_SYNP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123557014|sp|Q31PB6|RNPH_SYNE7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56685444|dbj|BAD78666.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168763|gb|ABB57103.1| RNAse PH [Synechococcus elongatus PCC 7942] Length = 238 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/242 (42%), Positives = 148/242 (61%), Gaps = 12/242 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +Q+R I+ RR +++ GS L +FG T +L T T++ VP W+ GW+T Sbjct: 4 IRPDGRRPDQLRAIAFQRRFTQFPAGSVLAQFGQTQVLCTVTIQAGVPRWLTGQGQGWLT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T +R RE + + GR+QEIQR+IGR+LR+ +DL LG R ++ID DV+Q Sbjct: 64 AEYRMLPGATPDRQSREWL--KLSGRTQEIQRLIGRSLRAAIDLKKLGERTLLIDADVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHM----EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 AD GTRT AI G+WVAL D + + E + Q S +AA+S ++ G +D Sbjct: 122 ADAGTRTTAINGSWVALQDAIAQLIAQGELTESPIQRS------IAAVSVALIGGEAFLD 175 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 DY ED DVD N VM D G ++E+QG+AE FS+ +L+LA+ IA + Q + Sbjct: 176 PDYPEDVQADVDCNVVMGDRGELIEIQGTAEANPFSRTQLNHILDLAEQGIAQIQAAQLE 235 Query: 237 VI 238 + Sbjct: 236 AL 237 >gi|261415038|ref|YP_003248721.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371494|gb|ACX74239.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326761|gb|ADL25962.1| tRNA nucleotidyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 241 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 105/239 (43%), Positives = 154/239 (64%), Gaps = 8/239 (3%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R+ + R + +T A+GS L++ G T ++ ATL KVP W+ GWITAEY + Sbjct: 8 RKPEEFRNLKMTTGFISSADGSVLIEMGRTRVICNATLLPKVPDWLAGRGTGWITAEYSL 67 Query: 66 LPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 LP+STG RV+RE R+G GR+QEIQR++GR+LR DL+ALG I++DCDVI+ADG Sbjct: 68 LPQSTGKRVERE----RKGASGRTQEIQRLVGRSLRGAADLAALGENAIVVDCDVIEADG 123 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 GTRTA+I G +VAL ++ +++ Q Q+LK + AIS G++ G P+ DL Y EDS Sbjct: 124 GTRTASIIGGFVALAIAVKKIKERLGITQ--QILKHGITAISVGVVDGNPLCDLCYVEDS 181 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 DVD N VM D+ + +EVQG+ E A+F + +L+L ++ ++ K Q ++I E+ Sbjct: 182 AADVDMNVVMQDAKNFIEVQGTGEHASFDRAMLNTLLDLGENACKEIYKKQMELIGGEL 240 >gi|220910436|ref|YP_002485747.1| ribonuclease PH [Cyanothece sp. PCC 7425] gi|254808586|sp|B8HPC6|RNPH_CYAP4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|219867047|gb|ACL47386.1| ribonuclease PH [Cyanothece sp. PCC 7425] Length = 239 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 104/237 (43%), Positives = 152/237 (64%), Gaps = 4/237 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R IS R +++A GS L + G T +L T+ VP ++ GW+TA Sbjct: 5 RPDGRQSHQLRPISFERGFTRFAAGSVLTRCGQTQVLCNVTVRPGVPKFLEGRGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ +D LG R +++D DV+QA Sbjct: 65 EYRMLPAATPQRQEREML--KLSGRTQEIQRLIGRSLRAALDFDLLGERTLVVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT AITG++VAL D + + + + Q S + + +VAA+S G+L G P +DL Y E Sbjct: 123 DAGTRTTAITGSFVALADAIDQLLQ-AGELQRSPI-RNYVAAVSVGLLEGEPFLDLSYQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D VD N VMT+S I+E+QG+AE +FS+ +L++A+ I +LI QK V+ Sbjct: 181 DVAASVDFNVVMTESLQILELQGTAEGESFSRTQLNQILDVAEVGIRELIAAQKSVL 237 >gi|221632459|ref|YP_002521680.1| ribonuclease PH [Thermomicrobium roseum DSM 5159] gi|221156234|gb|ACM05361.1| ribonuclease PH [Thermomicrobium roseum DSM 5159] Length = 243 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 111/231 (48%), Positives = 154/231 (66%), Gaps = 4/231 (1%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR +++R + + YAEGS L+ G+TH+L AT+EE+VP ++ + GWITAEYG Sbjct: 11 GRANDELRPVEIVPHYIPYAEGSALIMLGNTHVLCAATVEERVPSFLVGSGQGWITAEYG 70 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPRS R+ RE + GGR+ EIQR+IGR+LR+ VDL+ALG R IIIDCDV++ADGG Sbjct: 71 MLPRSGRERIPRERMG--PGGRTAEIQRLIGRSLRAAVDLAALGERTIIIDCDVLRADGG 128 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTAAITG WVA + + V++ VAA+S G++ G P +DL+Y EDS Sbjct: 129 TRTAAITGGWVA-LHLALQHLLAEGRIESLPVVR-QVAAVSVGVVAGQPRLDLEYAEDSC 186 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 +VD N VMTD G VE+QG+AE F ++ +L LA+ I++L+ +Q+ Sbjct: 187 AEVDMNIVMTDRGEFVELQGTAEGQPFGREVLEQLLRLAERGISELMLVQR 237 >gi|154500957|ref|ZP_02038995.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC 29799] gi|150269981|gb|EDM97500.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC 29799] Length = 238 Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 104/237 (43%), Positives = 154/237 (64%), Gaps = 3/237 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R I + ++K+AEGSCL++ G+TH+L TA++E++VP + + GW+TA Sbjct: 3 RIDGRANDQLRPIEIIPGINKFAEGSCLIRCGNTHVLCTASVEDRVPPHVPEGE-GWVTA 61 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R KR+ + RS EIQR++GR+LR+ VD+ ALG R I +DCDV+Q Sbjct: 62 EYSMLPRANRERSKRDIAKLKLSARSAEIQRLVGRSLRAAVDMKALGPRTITVDCDVLQG 121 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA++TG +VAL L + + + LK VAAIS G++ ++DL Y E Sbjct: 122 DGGTRTASVTGGFVALSFALHKLVE--EGVLEAMPLKTCVAAISAGIVDDQLLLDLCYEE 179 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS+ VD N VMT G +VE+QG+ E +F+ + A++ L I D+ +QK V+ Sbjct: 180 DSSAQVDLNCVMTGEGELVELQGTGEGRSFTLEEQRALVELCAKGIRDVQAVQKAVL 236 >gi|78185641|ref|YP_378075.1| ribonuclease PH [Synechococcus sp. CC9902] gi|78169935|gb|ABB27032.1| RNAse PH [Synechococcus sp. CC9902] Length = 243 Score = 198 bits (503), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 106/240 (44%), Positives = 150/240 (62%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N +R S+T +A S V+ G T +L + L++ VP W R GW++A Sbjct: 8 RADGRCRNALRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+ VD++ LG R ++IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQGRELM--KLSGRTQEIQRLIGRSLRAAVDMAQLGERTLLIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITGAW+ALH + S + L+ VAA+S G++ ++DLDY E Sbjct: 126 DAGTRTAAITGAWLALHRACSRL--VSQGILENSPLQSQVAAVSVGLVDSQALLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V D G ++EVQG+AE A FS+ A+L+LA+ + L++ Q+ + +E Sbjct: 184 DSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDALLDLAEPGLRQLMEAQRQALVSE 243 >gi|269128062|ref|YP_003301432.1| ribonuclease PH [Thermomonospora curvata DSM 43183] gi|268313020|gb|ACY99394.1| ribonuclease PH [Thermomonospora curvata DSM 43183] Length = 239 Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 106/249 (42%), Positives = 151/249 (60%), Gaps = 24/249 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R +Q+R + + R +AEGS L++FG T +L A++++ VP W R++ GW+TA Sbjct: 3 RPDDRAPDQLRPVRIQRNWLDHAEGSVLIEFGATRVLCAASVQDSVPRWRRDSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+V GR GGR+QEI R+IGR+LR+ VD LG +++DCDV+QA Sbjct: 63 EYAMLPRATHTRGERESVKGRLGGRTQEISRLIGRSLRACVDFKELGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----------- 170 DGGTRTAAITGA+VAL D + M + +++KG ++C Sbjct: 123 DGGTRTAAITGAYVALADAVAWMRE-------RELIKGDP------LICSVAAVSVGVVD 169 Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 G P +DL Y ED D N V T G VEVQG+AE F + A+L+LA A+L Sbjct: 170 GEPRLDLCYAEDVEAGTDMNVVCTGDGKFVEVQGTAEGQPFDRAELDALLDLAAGGCAEL 229 Query: 231 IKLQKDVIS 239 +LQ++ ++ Sbjct: 230 TRLQQEALN 238 >gi|116072072|ref|ZP_01469340.1| Ribonuclease PH [Synechococcus sp. BL107] gi|116065695|gb|EAU71453.1| Ribonuclease PH [Synechococcus sp. BL107] Length = 243 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 104/240 (43%), Positives = 151/240 (62%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N +R S+T +A S V+ G T +L + L++ VP W R GW++A Sbjct: 8 RADGRCRNDLRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+ VD++ LG R ++IDCDVI+A Sbjct: 68 EYRLLPGSTPQRQGRELM--KLSGRTQEIQRLIGRSLRAAVDMAKLGERTLLIDCDVIEA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITGAW+AL + S S L+ VAA+S G++ G ++DLDY E Sbjct: 126 DAGTRTAAITGAWLALQRACSRL--VSQGILESSPLQSQVAAVSVGLVDGQALLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V D G ++EVQG+AE A FS+ +L+LA+ + L++ Q++ ++++ Sbjct: 184 DSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDELLDLAEPGLKQLMQAQREALASD 243 >gi|119512637|ref|ZP_01631712.1| Ribonuclease PH [Nodularia spumigena CCY9414] gi|119462708|gb|EAW43670.1| Ribonuclease PH [Nodularia spumigena CCY9414] Length = 247 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 106/239 (44%), Positives = 149/239 (62%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ ++R IS +++A GS L KFGDT +L T ++ E VP ++ T GW+T+ Sbjct: 5 RPDGRQPYELRPISFHAGFTRFAPGSVLTKFGDTQILCTVSVSEGVPKFLAGTGKGWLTS 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE + + GR+QEIQR+IGR+LR+ +D ALG R + +D DV+QA Sbjct: 65 EYRMLPSSTQERQPRELL--KLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITG +VAL + + S + S L G VAAIS G+L G P +DL+Y E Sbjct: 123 DAGTRTAAITGGFVALAHAVGQLLH-SGVLERSP-LCGQVAAISVGLLQGEPYLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D VD N VM + I+E+QG+AE ++S+ +L+ A+ I L+ Q++ I+ Sbjct: 181 DVGAAVDFNVVMNQNLGIIEIQGTAEEGSYSRTQLNQLLDFAEKGIQQLLIAQREAIAG 239 >gi|124024144|ref|YP_001018451.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303] gi|123964430|gb|ABM79186.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303] Length = 244 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 106/241 (43%), Positives = 151/241 (62%), Gaps = 6/241 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + MR + +T +A S +++ G T +L + +EE VP W + GW++A Sbjct: 8 RADGRLADVMRPLQVTWDPMGFALSSLIIRTGRTAVLCSVCVEEGVPRWRQGQGKGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+V+D++AL + IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQNRELL--KLSGRTQEIQRLIGRSLRAVIDMAALRETTLRIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVAL-HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 D GTRTAAITGAW+AL C + +E Q + VAA+S G++ YP++DLDY Sbjct: 126 DAGTRTAAITGAWIALKRGCDRLLE---QGLLTHQPVIDQVAAVSVGLVDSYPLLDLDYS 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DVD N VM +GH++E+QG+AE A FS++ +LNLA+ + L Q+ + Sbjct: 183 EDSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQTFQRSALMQ 242 Query: 241 E 241 E Sbjct: 243 E 243 >gi|281356100|ref|ZP_06242593.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548] gi|281317469|gb|EFB01490.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548] Length = 247 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 149/239 (62%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGWI 59 R+ GR +++R+I +T + S L++ G T ++ +++ KVP W++N K GWI Sbjct: 3 RIDGRAPDELRKIVITPDYLSHPLASVLIRNGGTRVVCAVSIDAKVPAWMKNRKVPGGWI 62 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T EYGMLP ST +R+KRE+ +G+QGGR+ EIQR+IGR+LR DL LG +DCDVI Sbjct: 63 TCEYGMLPASTHDRMKRESSAGKQGGRTVEIQRLIGRSLRMSADLLKLGENTAYLDCDVI 122 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTR A ITGA AL + + K VAAIS G++ G P++DL Y Sbjct: 123 DADGGTRCAGITGAATAL--AIACRRGVAKGIFPENPFKESVAAISVGVIGGVPMLDLCY 180 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N VMT+SG +VEVQG+AE FS+ +++LA+ + + +Q++ + Sbjct: 181 EEDSNAEVDMNVVMTESGKLVEVQGTAEGEPFSRARLNELIDLAEHGLKQVFAMQREAV 239 >gi|294056535|ref|YP_003550193.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221] gi|293615868|gb|ADE56023.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221] Length = 252 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/243 (45%), Positives = 147/243 (60%), Gaps = 12/243 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59 R R +Q+R I ++ +A GS LV FG T ++ A++++KVP W+R + GW+ Sbjct: 11 RPDQRAVDQLRPIHFETGIAPHALGSVLVSFGQTRVICAASIDKKVPGWMRAQGVEGGWM 70 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP ST +R R+ G+ GR+ EIQR+IGR+LR+V DL L R I IDCDV+ Sbjct: 71 TAEYSMLPYSTLDRKPRDISRGKADGRTIEIQRLIGRSLRAVFDLKKLPGRTIWIDCDVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHM----EDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 QADGGTRTA+I+GA+VA +Q + E +N F S VAAIS G+ P++ Sbjct: 131 QADGGTRTASISGAYVAAQIAVQKLIAAGELEANPFTDS------VAAISVGVFQDTPVL 184 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DL+Y ED VDAN VMT +G VEVQ S E ATF + +L L I +L LQ+ Sbjct: 185 DLNYPEDKDASVDANIVMTGTGKYVEVQSSGEEATFDRAELDTLLELGAKGIQELSALQQ 244 Query: 236 DVI 238 I Sbjct: 245 QAI 247 >gi|254166930|ref|ZP_04873784.1| ribonuclease PH [Aciduliprofundum boonei T469] gi|254168500|ref|ZP_04875344.1| ribonuclease PH [Aciduliprofundum boonei T469] gi|289596090|ref|YP_003482786.1| ribonuclease PH [Aciduliprofundum boonei T469] gi|197622555|gb|EDY35126.1| ribonuclease PH [Aciduliprofundum boonei T469] gi|197624540|gb|EDY37101.1| ribonuclease PH [Aciduliprofundum boonei T469] gi|289533877|gb|ADD08224.1| ribonuclease PH [Aciduliprofundum boonei T469] Length = 234 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 101/238 (42%), Positives = 152/238 (63%), Gaps = 6/238 (2%) Query: 3 LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62 + R+ +++R + + K GS L+K GDT +L +A + E VP W++ GW+TAE Sbjct: 1 MRNRKPDEIRNVEIIPNYQKKPYGSALIKQGDTVVLCSAQVIENVPDWLKEQNSGWLTAE 60 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122 Y MLP S+ R+ R+ G GRS+EI+R+IGR LR+ VDL LG R I IDCDVIQAD Sbjct: 61 YSMLPGSSETRIFRD--RGHVNGRSKEIERIIGRCLRAAVDLKKLGPRTIWIDCDVIQAD 118 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYGE 181 GGTRTA+IT +VAL ++ + + +L + +K VAAIS G++ G P++DL Y E Sbjct: 119 GGTRTASITAGFVALSLAIRRL---MKEGKLGENPIKYKVAAISAGIVNGEPLLDLAYEE 175 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS DVD N M + G +E+QG++E+ S+++ +L+LA+ I +L K Q++ ++ Sbjct: 176 DSQADVDINIAMNEEGKYIEIQGTSEKEPLSRENLNILLDLAEKGIKELFKKQEEALN 233 >gi|302338872|ref|YP_003804078.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293] gi|301636057|gb|ADK81484.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293] Length = 236 Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 95/228 (41%), Positives = 145/228 (63%), Gaps = 2/228 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR++ + GSCL +GDT ++ T +LE++VP ++ GW+TAEYGMLP ST Sbjct: 1 MRDVQFQTSYLIHPAGSCLASYGDTKVICTVSLEDRVPSFLEGRGCGWLTAEYGMLPGST 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G K+ + G++ GRS EIQR+IGR+LR+ VD+ LG R + +DCDVIQADGGTRTA++ Sbjct: 61 GGGRKQREI-GKRDGRSTEIQRLIGRSLRASVDMEKLGERTLTVDCDVIQADGGTRTASV 119 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 +G WVAL++ L + + + LKG +AA+S G++ G + DLDY DS +VD N Sbjct: 120 SGGWVALYEALSALAEREGRGGADYYLKGQLAAVSVGIVDGQVVCDLDYAHDSRAEVDMN 179 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 V + VE+QG+ E+ TFS + +++ A + + + + Q+D + Sbjct: 180 IVKLEEA-FVELQGTGEKGTFSSEQLASLIAAADEGLTFIFQKQRDAL 226 >gi|218439976|ref|YP_002378305.1| ribonuclease PH [Cyanothece sp. PCC 7424] gi|226736901|sp|B7KB81|RNPH_CYAP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|218172704|gb|ACK71437.1| ribonuclease PH [Cyanothece sp. PCC 7424] Length = 242 Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 154/239 (64%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R RQ +Q+R I S++ GS L G+T +L TAT++ VP ++ N+ GW+TA Sbjct: 5 RPDSRQPDQLRPILFETNYSRFRVGSVLAHCGETRVLCTATIQPNVPKFLLNSGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+QEIQR+IGR+LR+ +D LG R IIID DV+QA Sbjct: 65 EYRMLPGATPERQSRELM--QLSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT AITG ++AL ++ + + + Q S LK VAA+S G++ G P +DL+Y E Sbjct: 123 DAGTRTTAITGGYIALGLAIKKLLEV-GELQESP-LKLPVAAVSVGLIEGEPFLDLNYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ +VD N VMT + ++EVQG+AE +FS+ +L+LA+ I +L+ Q++ I++ Sbjct: 181 DTAAEVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQTGIQELLVAQQNAINS 239 >gi|149173903|ref|ZP_01852532.1| ribonuclease PH [Planctomyces maris DSM 8797] gi|148847433|gb|EDL61767.1| ribonuclease PH [Planctomyces maris DSM 8797] Length = 246 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 115/242 (47%), Positives = 150/242 (61%), Gaps = 12/242 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58 MR RQ Q+R I + R +K GS L+ GDT +L TA+L+ VP W +N ++ GW Sbjct: 1 MRHDSRQPEQLRPIKVERGYTKATPGSILISAGDTVVLCTASLDNSVPPWKKNDENPSGW 60 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +TAEY MLP ST R +R R GRS EIQR+IGR+LR+V+D ALG R I +DCDV Sbjct: 61 VTAEYNMLPGSTSPRKQR-----RADGRSSEIQRLIGRSLRAVIDFGALGPRTITVDCDV 115 Query: 119 IQADGGTRTAAITGAWVALHD-CLQHMEDC----SNKFQLSQVLKGHVAAISCGMLCGYP 173 +QADGGTRT +ITG ++AL D L E C F ++ VAA+S G++ G P Sbjct: 116 LQADGGTRTLSITGGFLALLDTVLAIPETCELAPGEVFDPKRIFSDSVAAVSVGVVNGEP 175 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++DLDY EDST VD N VMT G +EVQG+AE TF++ A L LA I L ++ Sbjct: 176 VLDLDYVEDSTAGVDMNVVMTGGGDFIEVQGTAEGQTFNRGMLDAQLELATAGIQQLSEI 235 Query: 234 QK 235 Q+ Sbjct: 236 QR 237 >gi|299144136|ref|ZP_07037216.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518621|gb|EFI42360.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 438 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 148/234 (63%), Gaps = 2/234 (0%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 R+ ++MR I L + +GS L+K G+T ++ TA +E+KVP +++ GW++ EY Sbjct: 4 NRKFDEMRNIELELNYTSAPDGSVLIKCGNTKVICTAMIEDKVPFFLKGKNSGWLSCEYS 63 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLP ST R R+ G+ GRSQEIQR+IGR+LRS VDLS +G + I IDCDVI ADGG Sbjct: 64 MLPGSTSVRKVRDISRGKLDGRSQEIQRLIGRSLRSCVDLSKIGEKTIWIDCDVISADGG 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRT +I G+++AL +++ L +K VAAIS G++ ++DL+Y EDS Sbjct: 124 TRTTSINGSFIALSLAVKNA--IRQGIILENPIKNKVAAISVGIVENEKLLDLNYDEDSN 181 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 VD N VM D+ I+E+QG+AE +FS+ +++L++ I ++ +Q V+ Sbjct: 182 AQVDLNVVMNDNKEIIEIQGTAEGRSFSRKELNELIDLSEIAIDNIFNIQNKVL 235 >gi|320352955|ref|YP_004194294.1| RNAse PH [Desulfobulbus propionicus DSM 2032] gi|320121457|gb|ADW17003.1| RNAse PH [Desulfobulbus propionicus DSM 2032] Length = 235 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 109/233 (46%), Positives = 149/233 (63%), Gaps = 3/233 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R + +R S+ V +A+GS L++ G+TH+L T+E++VP ++++ GWIT Sbjct: 1 MRSGERSADALRPFSVEYGVQPHADGSVLIRMGNTHVLCGVTVEDRVPPFLKDKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP +T +R +REAVSG GR+ EIQR+IGR+LR +VDLS LG + +DCDV+ Sbjct: 61 AEYGMLPCATHSRGRREAVSGLS-GRTHEIQRLIGRSLRMMVDLSLLGEHTLRVDCDVLN 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG +A+ L M + L +L VAAIS G++ G P++DLDY Sbjct: 120 ADGGTRCASITGGALAVKMALARMVERGRLPALPPLLP--VAAISAGVVAGQPVLDLDYA 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS+ +VDANFVM+ G +EVQ +AE F F AM LA L L Sbjct: 178 EDSSAEVDANFVMSGDGRWIEVQSTAEGGPFHPQLFTAMAELAARGTGQLFGL 230 >gi|88808003|ref|ZP_01123514.1| Ribonuclease PH [Synechococcus sp. WH 7805] gi|88788042|gb|EAR19198.1| Ribonuclease PH [Synechococcus sp. WH 7805] Length = 340 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 100/240 (41%), Positives = 151/240 (62%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +++R ++ +A S +V+ G T +L + E+ VP W R+ GW++A Sbjct: 105 RKDGRQASELRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEQGVPRWRRDQGLGWLSA 164 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R +RE + + GR+QEIQR+IGR+LR+ + + ALG +++DCDVIQA Sbjct: 165 EYRLLPGSTPERQRREWL--KLSGRTQEIQRLIGRSLRAALSMEALGENTLLVDCDVIQA 222 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAW+ALH + S + ++ VAA+S G+L G ++DLDY E Sbjct: 223 DAGTRTASITGAWLALHHACASL--VSQGLIPANPVRAQVAAVSVGLLQGEALLDLDYSE 280 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N VM SG ++E+QG+AE ATFS+ +L+ A+ + L++ Q + + + Sbjct: 281 DSQADVDLNVVMNASGELLELQGTAEGATFSRQQLNLLLDRAEPGLKQLMRAQNEALRTQ 340 >gi|298490673|ref|YP_003720850.1| ribonuclease PH ['Nostoc azollae' 0708] gi|298232591|gb|ADI63727.1| ribonuclease PH ['Nostoc azollae' 0708] Length = 246 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 149/239 (62%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++R +S +++A GS L K GDT +L T ++ + VP ++ T GW+TA Sbjct: 5 RPDGRNSYELRPLSFYSNFTRFASGSVLAKCGDTQVLCTVSVSDSVPKFLNGTGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ +D LG R +IID DV+QA Sbjct: 65 EYRMLPSATQKRQERELL--KLSGRTQEIQRLIGRSLRAALDFEVLGERTLIIDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT AITG++VAL + M + S + + VAA+S G+L G +DL+Y E Sbjct: 123 DAGTRTTAITGSFVALAHAISQMLQ-QGVLERSPLCR-QVAAVSVGLLAGEAFLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D VD N VM + I+EVQG+AE +F++ +L++A+ I +L+ Q+D I+N Sbjct: 181 DVAATVDFNVVMNQNLEIIEVQGTAEEGSFNRQQLNKLLDVAEKGIQELLIAQRDAITN 239 >gi|51473808|ref|YP_067565.1| ribonuclease PH [Rickettsia typhi str. Wilmington] gi|51460120|gb|AAU04083.1| Phosphate-dependent exonuclease [Rickettsia typhi str. Wilmington] Length = 168 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 93/168 (55%), Positives = 121/168 (72%), Gaps = 2/168 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL +AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLIHAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGM+P ST NR+KRE G+QGGR+QEIQR+IGR +R V++L LG RQIIIDCDVI Sbjct: 61 AEYGMIPGSTSNRIKREVALGKQGGRTQEIQRLIGRVMRCVINLQKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 ADGGTRT+AITG+++ALH ++ + + L +AAISCG+ Sbjct: 121 ADGGTRTSAITGSYIALHLAIRLLMK--KRILKVNTLISQIAAISCGI 166 >gi|158317399|ref|YP_001509907.1| ribonuclease PH [Frankia sp. EAN1pec] gi|226736910|sp|A8L766|RNPH_FRASN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|158112804|gb|ABW15001.1| ribonuclease PH [Frankia sp. EAN1pec] Length = 260 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 148/235 (62%), Gaps = 7/235 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +Q+R++++ R ++AEGS L+ G T +L A++ E VP W + + GW+T Sbjct: 2 IRVDGRTTDQLRDVTIERGWQEHAEGSALISAGRTRVLCAASVTEGVPRWRKGSGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I IDCDV+ Sbjct: 62 AEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLL 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + V A+S G++ G P++DL Y Sbjct: 122 ADGGTRTAAITGAYVALADACRWL-------GRPAAIVTSVCAVSVGVVGGVPMLDLAYT 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST D D N V T +G VEVQG+AE F + +L+LA L ++Q Sbjct: 175 EDSTADTDMNVVRTGAGGFVEVQGTAEGTPFERSTLDELLDLAVAGCTRLTEIQN 229 >gi|260435940|ref|ZP_05789910.1| ribonuclease PH [Synechococcus sp. WH 8109] gi|260413814|gb|EEX07110.1| ribonuclease PH [Synechococcus sp. WH 8109] Length = 247 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 148/239 (61%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ Q+R S+ +A S +V G T +L + LE+KVP W + GW++A Sbjct: 8 RTDGRRPQQLRPFSVNWNPMGFALSSLVVHTGRTAVLCSVCLEDKVPRWRKGEGFGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+V+D+ LG R ++IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAW+AL + + D Q L VAA+S G++ G ++DLDY E Sbjct: 126 DAGTRTASITGAWLALDQACRSLVDQGVLEQ--SPLIDQVAAVSVGLVDGQALLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N V + G ++E+QG+AE A FS+ +L+LA+ + L++ Q+ + Sbjct: 184 DSRAEVDLNVVQSGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLTSLMQAQRQAFNE 242 >gi|61216057|sp|Q8DLA4|RNPH_THEEB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase Length = 242 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ ++R R +++A GS L + G T +L T + +E VP ++ T GW+TA Sbjct: 5 RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LRS VDLS LG +I+D DV+QA Sbjct: 65 EYRMLPSATRPRQEREFL--KLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTR+ AITG ++AL D L + L+ VAA+S G++ P +DL Y E Sbjct: 123 DAGTRSLAITGGYIALVDALSAL--LQQGVLRKSPLRHQVAAVSVGLIDDEPYLDLSYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D VD N VMT SG +EVQG+AE +F + +L++A+ I +LI++Q+ V++ Sbjct: 181 DVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRVLA 238 >gi|312199598|ref|YP_004019659.1| ribonuclease PH [Frankia sp. EuI1c] gi|311230934|gb|ADP83789.1| ribonuclease PH [Frankia sp. EuI1c] Length = 250 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/235 (47%), Positives = 147/235 (62%), Gaps = 7/235 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R++++ R AEGS L+ FG T +L A++ E VP W + + GW+TA Sbjct: 3 RHDGRAADQLRDVTIVRGWQDQAEGSALINFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL LG I IDCDV+ A Sbjct: 63 EYSMLPRATNTRNDRESVKGRIGGRTHEISRLIGRSLRACIDLKQLGENTIAIDCDVLLA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADACGWL-------GRPKAISGGVSAVSVGVVGGVPMLDLAYVE 175 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 DS D D N V TD+G VEVQG+AE F + +L+LA A L K Q D Sbjct: 176 DSAADTDMNVVCTDTGSFVEVQGTAEGVVFDRAMLDQLLDLAVAGCAQLAKAQAD 230 >gi|22298135|ref|NP_681382.1| ribonuclease PH [Thermosynechococcus elongatus BP-1] gi|22294313|dbj|BAC08144.1| ribonuclease PH [Thermosynechococcus elongatus BP-1] Length = 249 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ ++R R +++A GS L + G T +L T + +E VP ++ T GW+TA Sbjct: 12 RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTA 71 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LRS VDLS LG +I+D DV+QA Sbjct: 72 EYRMLPSATRPRQEREFL--KLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTR+ AITG ++AL D L + L+ VAA+S G++ P +DL Y E Sbjct: 130 DAGTRSLAITGGYIALVDALSAL--LQQGVLRKSPLRHQVAAVSVGLIDDEPYLDLSYAE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D VD N VMT SG +EVQG+AE +F + +L++A+ I +LI++Q+ V++ Sbjct: 188 DVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRVLA 245 >gi|116075628|ref|ZP_01472887.1| ribonuclease PH [Synechococcus sp. RS9916] gi|116066943|gb|EAU72698.1| ribonuclease PH [Synechococcus sp. RS9916] Length = 255 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 102/240 (42%), Positives = 147/240 (61%), Gaps = 6/240 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +R ++ +A S +V+ G T +L + +E VP W + GW++A Sbjct: 17 RNDGRSAADLRPFAINWDPMGFAISSLIVRTGRTAVLCSVCHQEGVPRWRKGQGKGWLSA 76 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+ +D+ ALG ++IDCDVIQA Sbjct: 77 EYRLLPGSTPERQNRELL--KLSGRTQEIQRLIGRSLRACIDMEALGENTLLIDCDVIQA 134 Query: 122 DGGTRTAAITGAWVAL-HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 D GTRTA+ITGAWVAL H C Q + + Q + VAA+S G++ P++DLDY Sbjct: 135 DAGTRTASITGAWVALKHACDQLL---AQGLVTRQPITKQVAAVSVGLVNSAPLLDLDYS 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DVD N VM + H++E+QG+AE A FS+ +L+LA+ + L+ Q+ + N Sbjct: 192 EDSRADVDLNVVMDEHQHLLEIQGTAEGAAFSRSELNGLLDLAEPGLQQLMDSQRQALRN 251 >gi|330952125|gb|EGH52385.1| ribonuclease PH [Pseudomonas syringae Cit 7] Length = 186 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 95/185 (51%), Positives = 129/185 (69%), Gaps = 1/185 (0%) Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 G +TAEYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +D Sbjct: 3 RGGLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVD 62 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 CDVIQADGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++ Sbjct: 63 CDVIQADGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVL 121 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DLDY EDS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ Sbjct: 122 DLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQR 181 Query: 236 DVISN 240 +++ Sbjct: 182 AALAD 186 >gi|78211822|ref|YP_380601.1| RNAse PH [Synechococcus sp. CC9605] gi|123578898|sp|Q3AMY6|RNPH_SYNSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|78196281|gb|ABB34046.1| ribonuclease PH [Synechococcus sp. CC9605] Length = 247 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 148/239 (61%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ Q+R S+T +A S +V G T +L + LE KVP W + GW++A Sbjct: 8 RTDGRRPEQLRPFSVTWNPMGFALSSLVVHTGRTAVLCSVCLEGKVPRWRKGEGLGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+V+D+ LG R ++IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAW+AL + + + Q L VAA+S G++ G ++DLDY E Sbjct: 126 DAGTRTASITGAWLALDQACRSLVEQGVLEQ--SPLVDQVAAVSVGLVDGQALLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N V G ++E+QG+AE A FS+ +L+LA+ ++ L++ Q+ + Sbjct: 184 DSRAEVDLNVVQAGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLSSLMQAQRQAFTE 242 >gi|307719046|ref|YP_003874578.1| ribonuclease PH [Spirochaeta thermophila DSM 6192] gi|306532771|gb|ADN02305.1| ribonuclease PH [Spirochaeta thermophila DSM 6192] Length = 226 Score = 191 bits (485), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 102/225 (45%), Positives = 135/225 (60%), Gaps = 5/225 (2%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR +S V Y GSCLV FG+T +L A++EE VP +I GW+TAEY MLP S Sbjct: 1 MRPVSFEAGVLAYPAGSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASV 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 KR + R+ EIQR IGR+LR+ VD + LG I++DCDV+QADGGTRTAAI Sbjct: 61 PEGRKRR----ERDSRAVEIQRFIGRSLRAAVDRTRLGPYTIVMDCDVLQADGGTRTAAI 116 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 +G WVAL+ L + + L G VAA+S GM+ G + DLD+ D VD N Sbjct: 117 SGGWVALYQALGKLAEMQGVEGPDYFLVGQVAAVSVGMVEGRLVADLDFAHDLAAQVDMN 176 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 VM D +VEVQG+ E+ +F++D AML+LA I + + Q+ Sbjct: 177 VVMCDD-RLVEVQGNGEKGSFTRDELDAMLDLAAREIRIIYEAQR 220 >gi|148238656|ref|YP_001224043.1| ribonuclease PH [Synechococcus sp. WH 7803] gi|147847195|emb|CAK22746.1| Ribonuclease PH [Synechococcus sp. WH 7803] Length = 241 Score = 191 bits (484), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 100/237 (42%), Positives = 147/237 (62%), Gaps = 4/237 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ + +R ++ +A S +V+ G T +L + EE VP W R+ GW++A Sbjct: 6 RKDGRQASALRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEEGVPRWRRDQGLGWLSA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R +RE + + GR+QEIQR+IGR+LR+ + + ALG ++IDCDVIQA Sbjct: 66 EYRLLPGSTPERQRREWL--KLSGRTQEIQRLIGRSLRAALSMEALGENTLLIDCDVIQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA++TGAW+AL + + + S + VAA+S G+L G ++DLDY E Sbjct: 124 DAGTRTASVTGAWLALQNACESL--VKQGVLQSNPVCSQVAAVSVGLLGGEALLDLDYSE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS DVD N VM DSG ++E+QG+AE FS+ +L+ A+ + L+ QK+ + Sbjct: 182 DSQADVDLNVVMNDSGELLELQGTAEGKAFSRQQLNLLLDRAEPGLKQLMDAQKEAL 238 >gi|313887997|ref|ZP_07821675.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845952|gb|EFR33335.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 238 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 99/226 (43%), Positives = 143/226 (63%), Gaps = 2/226 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 RQ ++ R+I +T + +GS L++ G T ++ +A +E KVP ++R GW+++EY M Sbjct: 5 RQNDEARQIRITPNYLDHPDGSVLIECGKTRVICSAMIENKVPGFLRGKNKGWLSSEYSM 64 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R R+ G+ GRS EI R+IGRALR+ +DL +G R I IDCDVI ADGGT Sbjct: 65 LPGSTPTRKVRDISKGKLDGRSSEISRLIGRALRTCIDLDKIGERTIWIDCDVISADGGT 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTAAITG+++AL ++ + + KF+ ++ VAAIS G + G +VDLD+ EDS Sbjct: 125 RTAAITGSYIALKLAVKKALE-NKKFEEDPIV-SKVAAISVGKVNGVKLVDLDFKEDSNA 182 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 DVD N VM D ++E+QG+ E+ TFS + L AK I ++ Sbjct: 183 DVDLNVVMNDDFQLIEIQGTGEKDTFSIEELNEFLLGAKRCIGEIF 228 >gi|149198134|ref|ZP_01875181.1| ribonuclease PH [Lentisphaera araneosa HTCC2155] gi|149138736|gb|EDM27142.1| ribonuclease PH [Lentisphaera araneosa HTCC2155] Length = 238 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 103/221 (46%), Positives = 138/221 (62%), Gaps = 5/221 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GRQ +Q+REI K + GS L G T ++ T +++ +P W + GW+T Sbjct: 1 MRVDGRQNDQLREIKFELGFVKNSLGSALSACGLTEVICTVNIKDGLPGWKSSGSGGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T R KREA GGRS EIQR+IGR LR+ VDL LG R I IDCDV+ Sbjct: 61 AEYRMLPGATHTRSKREA---GVGGRSSEIQRLIGRTLRAAVDLDKLGDRTIQIDCDVLN 117 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+I GA +AL + L+ ME+ +S ++K ++AIS G++ G ++DL Y Sbjct: 118 ADGGTRCASINGAMLALMNALKKMEE--QGVDISGIIKTPLSAISVGVVKGQALLDLCYK 175 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 EDS DVD N +MT G VEVQG+ E A FS+ +L+ Sbjct: 176 EDSAADVDMNVIMTAKGDFVEVQGTGEEAVFSRQELNELLD 216 >gi|209523065|ref|ZP_03271622.1| ribonuclease PH [Arthrospira maxima CS-328] gi|209496652|gb|EDZ96950.1| ribonuclease PH [Arthrospira maxima CS-328] Length = 242 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/237 (41%), Positives = 150/237 (63%), Gaps = 4/237 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R + +++A S L K G+T +L T T++ VP ++++T GW+TA Sbjct: 6 RPDGRQPHQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+QEIQR+IGR+LR+ VDL A+G + +D DV+QA Sbjct: 66 EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG +VAL M + + S ++ +AAIS GM+ G P++DL+Y E Sbjct: 124 DAGTRTTSITGGFVALAHAFNKMVK-QGQLKRSPIIH-QIAAISVGMMHGEPLLDLNYQE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+D N VM D I+E+QG+AE + +++ +L+ A+ I +L +LQ+ V+ Sbjct: 182 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVL 238 >gi|284989916|ref|YP_003408470.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160] gi|284063161|gb|ADB74099.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160] Length = 250 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/237 (47%), Positives = 153/237 (64%), Gaps = 1/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +++TR +AEGS LV+FG T +L A++ E VP W + + GW+TA Sbjct: 9 RPDGRAADQLRPVTITRGWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG + IDCDV+QA Sbjct: 69 EYAMLPRATHTRGDRESVKGRIGGRTHEISRLIGRSLRAAIDLGALGENSVAIDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + VL+ VAA+S G++ G P +DL Y E Sbjct: 129 DGGTRTAAITGAYVALADAVGWLGERRKLARPRAVLQ-SVAAVSVGVVDGQPRLDLAYEE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N V T G VEVQG+AE F + A+L+LA A+L ++Q D + Sbjct: 188 DVRAGTDMNVVCTGDGSFVEVQGTAENGVFDRAALDALLDLAVGGCAELSRIQADAL 244 >gi|317968641|ref|ZP_07970031.1| ribonuclease PH [Synechococcus sp. CB0205] Length = 244 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 145/239 (60%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +R +A S V G+T ++ + LEE VP W + + GW++A Sbjct: 7 RRDGRSATDLRSTRFAWDPMGFALSSVTVYTGNTAVICSVCLEEGVPKWRKGSGKGWLSA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +Y +LP ST +R RE + + GR+QEIQR+I R+LR+ +DL ALG R + IDCDV+QA Sbjct: 67 DYRLLPASTPSRQPRELM--KLSGRTQEIQRLIARSLRACLDLEALGERTLQIDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAW AL LQ +E L G VAA+S G++ G ++DLDY E Sbjct: 125 DAGTRTASITGAWAALAVGLQRLEQ--RGVLERSPLVGQVAAVSVGLVDGAALLDLDYSE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N VM H++E+QG+AE A FS+ ++++LA+ I L++ QK ++ Sbjct: 183 DSRAEVDLNVVMNQEQHLLEIQGTAEGAPFSRQQLSSLVDLAESGIDQLMQAQKQALAE 241 >gi|119493583|ref|ZP_01624247.1| ribonuclease PH [Lyngbya sp. PCC 8106] gi|119452573|gb|EAW33756.1| ribonuclease PH [Lyngbya sp. PCC 8106] Length = 241 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 151/241 (62%), Gaps = 6/241 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL R+ +Q+R + ++Y+ S L K G+T ++ T++ VP +++++ GW+TA Sbjct: 5 RLDDRKPDQLRPVHFELNYTRYSSASVLTKCGNTQVICNVTIQPGVPNFLKDSGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+QEIQR+IGR+LR+ VDL LG + +IID DV+QA Sbjct: 65 EYRMLPGATQQRHSRELM--KLSGRTQEIQRLIGRSLRAAVDLKVLGEKTVIIDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-VAAISCGMLCGYPIVDLDYG 180 D GTRTA+ITG +VAL + + D K +L + H +AAIS G+L G P +DL+Y Sbjct: 123 DAGTRTASITGGFVALANAFNKLVD---KGELEKSPISHQIAAISVGLLEGEPYLDLNYE 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED DVD N VM D ++E+QG+AE +F++ +++ A+ I L++ Q + + Sbjct: 180 EDVAADVDCNIVMNDQLGMIELQGTAEAESFTRQQLNKIMDYAEIGIKQLLEAQNQALKS 239 Query: 241 E 241 + Sbjct: 240 D 240 >gi|186682825|ref|YP_001866021.1| ribonuclease PH [Nostoc punctiforme PCC 73102] gi|226736921|sp|B2J9Q1|RNPH_NOSP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|186465277|gb|ACC81078.1| ribonuclease PH [Nostoc punctiforme PCC 73102] Length = 247 Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 100/239 (41%), Positives = 146/239 (61%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++R IS +++A GS L + GDT +L T ++ + VP ++ T GW+TA Sbjct: 5 RPDGRLPYELRPISFYPSFTRFAPGSVLARCGDTQVLCTVSVNKGVPKFLEGTGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ VD ALG R + +D DV+QA Sbjct: 65 EYRMLPSATQKRQERELL--KLSGRTQEIQRLIGRSLRAAVDFEALGERTLTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT AITG++VAL + + L G VAA+S G+L P +DL+Y E Sbjct: 123 DAGTRTTAITGSFVALAHAISKL--LQEGVLERSPLCGQVAAVSVGLLEAEPFLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D VD N VM I+EVQG+AE +FS+ +L++A+ I +L+ Q++ I++ Sbjct: 181 DVAATVDFNVVMDQHLGIIEVQGTAEEGSFSRTQLDQLLDVAQKGIQELLIAQREAIAD 239 >gi|282900962|ref|ZP_06308895.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505] gi|281194053|gb|EFA69017.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505] Length = 246 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 149/239 (62%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GRQ +Q+R ++ +++A GS L + G+T +L T ++ E VP ++ + GW+TA Sbjct: 5 RLDGRQPDQLRTLNFYPHFTRFAPGSVLAQCGETQVLCTVSITEGVPKFLMGSGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ ++ LG + + +D DV+QA Sbjct: 65 EYRMLPSATQQRQERELL--KLSGRTQEIQRLIGRSLRAALNFEILGEKTLTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG ++AL + H+ L G +AA+S G+L G +DLD+ E Sbjct: 123 DAGTRTISITGGFIALAHAITHL--LQQGVLERSPLCGQIAAVSVGLLKGEAFLDLDFTE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D +VD N VM +I+EVQG+AE +FS+ +L++A+ I +L+ Q+ VI + Sbjct: 181 DVNAEVDFNVVMNSKLNIIEVQGTAEAGSFSRQQLNQLLDVAETGIRELLIAQRSVIPD 239 >gi|315186954|gb|EFU20712.1| RNAse PH [Spirochaeta thermophila DSM 6578] Length = 223 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 98/222 (44%), Positives = 133/222 (59%), Gaps = 5/222 (2%) Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 +S V Y GSCLV FG+T +L A++EE VP +I GW+TAEY MLP S Sbjct: 1 MSFEVGVLAYPAGSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASVPEG 60 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 KR + R+ EIQR IGR+LR+ +D + LG I+IDCDV+QADGGTRTAAI+G Sbjct: 61 RKRR----ERDSRAVEIQRFIGRSLRAALDRTRLGPYTIVIDCDVLQADGGTRTAAISGG 116 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 WVAL+ L+ + + L G VAA+S G++ G + DLD+ D VD N VM Sbjct: 117 WVALYQALEKLAELHGVEGPEYFLAGQVAAVSVGIVEGQLVADLDFAHDLAAQVDMNVVM 176 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D +VEVQG+ E+ F+++ AML+LA I + + Q+ Sbjct: 177 CDD-RLVEVQGNGEKGAFTREELDAMLDLAAQEIGLIYEAQR 217 >gi|113954193|ref|YP_729551.1| ribonuclease PH [Synechococcus sp. CC9311] gi|113881544|gb|ABI46502.1| ribonuclease PH [Synechococcus sp. CC9311] Length = 241 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 97/238 (40%), Positives = 146/238 (61%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +R S++ +A S ++ G T +L + +E VP W ++ GW++A Sbjct: 6 RNDGRRPGDLRPFSISWDPMGFALSSVIIHSGRTTVLCSVCHQEGVPRWRKDQGKGWLSA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+ +D+ ALG + IDCDVIQA Sbjct: 66 EYRLLPGSTPERQNRELL--KLSGRTQEIQRLIGRSLRAAIDMEALGENTLRIDCDVIQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAI+G+WVAL + + + ++ VAA+S G++ P++DLDY E Sbjct: 124 DAGTRTAAISGSWVALQRACERL--VQQGVLNTNPVQSQVAAVSVGVIHKRPLLDLDYSE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS DVD N VM GH++E+QG+AE A FS+ +L+LA+ + ++ Q+ +S Sbjct: 182 DSQADVDLNVVMNGEGHLLELQGTAEGAPFSRHQLNDLLDLAEPGLKKIMDDQRAALS 239 >gi|38234421|ref|NP_940188.1| ribonuclease PH [Corynebacterium diphtheriae NCTC 13129] gi|61215954|sp|Q6NFN6|RNPH_CORDI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|38200684|emb|CAE50380.1| Putative ribonuclease PH [Corynebacterium diphtheriae] Length = 241 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 146/234 (62%), Gaps = 3/234 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 6 RADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE++ G+ GR+ EI R+IGR+LR+ VDL LG I IDCDV+QA Sbjct: 66 EYAMLPAATAERNARESMRGKVKGRTHEISRLIGRSLRAAVDLDELGENTINIDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + +++ LK VAA+S G++ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAVLKE--QGVVPGNPLKAAVAAVSVGVIDGQVCLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS DVD N +M VE+QG+ E TF +D +L+ A+ +L QK Sbjct: 184 DSRADVDMNVIMQ-GDRFVEIQGTGEHNTFDRDELAVILDFAQKGCQELFAAQK 236 >gi|223940166|ref|ZP_03632028.1| ribonuclease PH [bacterium Ellin514] gi|223891183|gb|EEF57682.1| ribonuclease PH [bacterium Ellin514] Length = 255 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 100/216 (46%), Positives = 137/216 (63%), Gaps = 6/216 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58 +R GR Q+R + ++ YA GS LV++G+T ++ T+EE VP W++ N GW Sbjct: 17 LRTDGRLPGQLRPLRFQNHIAPYATGSTLVEWGNTRVICGVTVEESVPRWMKEQNVIGGW 76 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 ITAEY MLP ST R +R+ G+ GRSQEIQR+IGRA+R+ +DL +GSR I +DCDV Sbjct: 77 ITAEYSMLPYSTLQRKQRDISKGKIDGRSQEIQRLIGRAMRAAIDLEKIGSRTIWVDCDV 136 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDL 177 +QADGGTRTAAITGA+VAL ++ + K + S +L H A + P++DL Sbjct: 137 LQADGGTRTAAITGAYVALSLAVRKLMS-EGKLKESPML--HAVAAVSVGVVNRQPLLDL 193 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 Y ED+ VD N VM G +E+QG+ E ATFS+ Sbjct: 194 CYVEDAAAAVDLNLVMNSVGEFIELQGTGEEATFSE 229 >gi|87125085|ref|ZP_01080932.1| ribonuclease PH [Synechococcus sp. RS9917] gi|86167405|gb|EAQ68665.1| ribonuclease PH [Synechococcus sp. RS9917] Length = 220 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 98/220 (44%), Positives = 141/220 (64%), Gaps = 6/220 (2%) Query: 23 YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGR 82 +A S LV+ G T +L + E VP W + GW++AEY +LP ST R KRE + + Sbjct: 3 FALSSVLVRSGRTAVLCSIGHEAGVPRWRMGSGKGWLSAEYRLLPGSTPERQKRELL--K 60 Query: 83 QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142 GR+QEIQR+IGR+LR+ +D+ ALG +++DCDVIQAD GTRTAAITGAWVAL + Sbjct: 61 LSGRTQEIQRLIGRSLRACLDMEALGENTLLVDCDVIQADAGTRTAAITGAWVALQRACE 120 Query: 143 HMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201 + + LS ++ VAA+S G++ G ++DL+Y EDS DVD N VM SG ++E Sbjct: 121 RL---VKRGDLSHNPVRDQVAAVSVGLIGGEALLDLNYSEDSQADVDLNVVMDGSGRLLE 177 Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 +QG+AE A FS+ +L+LA+ + L+ Q+ ++ E Sbjct: 178 LQGTAEGAPFSRSELTRLLDLAEPGLTALMAAQQRALAPE 217 >gi|291567427|dbj|BAI89699.1| ribonuclease PH [Arthrospira platensis NIES-39] Length = 242 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 148/237 (62%), Gaps = 4/237 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +Q+R + +++A S L K G+T +L T T++ VP ++++T GW+TA Sbjct: 6 RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+QEIQR+IGR+LR+ VDL A+G + +D DV+QA Sbjct: 66 EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +I G +VAL M + + S ++ +AAIS GM+ G ++DL+Y E Sbjct: 124 DAGTRTTSINGGFVALAHAFNKMVK-RGELKRSPIIH-QIAAISVGMMHGEALLDLNYQE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+D N VM D I+E+QG+AE + +++ +L+ A+ I +L +LQ+ V+ Sbjct: 182 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVL 238 >gi|284053737|ref|ZP_06383947.1| ribonuclease PH [Arthrospira platensis str. Paraca] Length = 241 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 148/237 (62%), Gaps = 4/237 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +Q+R + +++A S L K G+T +L T T++ VP ++++T GW+TA Sbjct: 5 RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+QEIQR+IGR+LR+ VDL A+G + +D DV+QA Sbjct: 65 EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +I G +VAL M + + S ++ +AAIS GM+ G ++DL+Y E Sbjct: 123 DAGTRTTSINGGFVALAHAFNKMVK-RGELKRSPIIH-QIAAISVGMMHGEALLDLNYQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+D N VM D I+E+QG+AE + +++ +L+ A+ I +L +LQ+ V+ Sbjct: 181 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVL 237 >gi|86739583|ref|YP_479983.1| ribonuclease PH [Frankia sp. CcI3] gi|123765222|sp|Q2JEN8|RNPH_FRASC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|86566445|gb|ABD10254.1| RNAse PH [Frankia sp. CcI3] Length = 247 Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 101/242 (41%), Positives = 142/242 (58%), Gaps = 7/242 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R++++ R ++AEGS L+ G T +L A++ VP W + + GW+T Sbjct: 2 IRADGRRPDELRQVTILRGWQEHAEGSALISAGRTRVLCAASVTTGVPRWRKGSGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GR+ EI R+IGR+LR+ +DL ALG I IDCDV+ Sbjct: 62 AEYSMLPRATDTRNDRESVRGRISGRTHEISRLIGRSLRACIDLKALGENTIAIDCDVLL 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + V G ++DL Y Sbjct: 122 ADGGTRTAAITGAYVALVDAARWLGRPDAIITSVSAVSVGVVK-------GEAMLDLAYS 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST D D N V T + VEVQG+AE F + ++L+LA A L +Q + + Sbjct: 175 EDSTADTDMNVVCTGADGFVEVQGTAEGTPFDRTMLDSLLDLAVRGCAQLTAIQTEALRG 234 Query: 241 EV 242 V Sbjct: 235 PV 236 >gi|75908883|ref|YP_323179.1| ribonuclease PH [Anabaena variabilis ATCC 29413] gi|123609297|sp|Q3M9Q2|RNPH_ANAVT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|75702608|gb|ABA22284.1| RNAse PH [Anabaena variabilis ATCC 29413] Length = 247 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 145/239 (60%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++R I+ + +++A GS L G+T +L T ++ E VP ++ + GW+TA Sbjct: 5 RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVAESVPKFLAGSGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ +D ALG R + +D DV+QA Sbjct: 65 EYRMLPSATQQRHERELL--KLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITG +VAL + + + L G VAA+S G+L +DL+Y E Sbjct: 123 DAGTRTAAITGGFVALAEAISQL--LQRGVLERSPLCGQVAAVSVGLLEQEAYLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D VD N VM + I+EVQG+AE +FS+ +L+ A+ I L+ Q+ I++ Sbjct: 181 DVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETGIQQLLIAQQKAITD 239 >gi|289607155|emb|CBI60875.1| unnamed protein product [Sordaria macrospora] Length = 148 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 80/128 (62%), Positives = 103/128 (80%) Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66 ++MR I++ +++AEGSCL+ FGDT +L TA+LEE++P W+R GW+TAEYGML Sbjct: 21 HPDEMRPITIETNFTRHAEGSCLIGFGDTKVLVTASLEERLPPWLRGKGEGWVTAEYGML 80 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 PR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQADGGTR Sbjct: 81 PRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQADGGTR 140 Query: 127 TAAITGAW 134 TA+I+GAW Sbjct: 141 TASISGAW 148 >gi|170078680|ref|YP_001735318.1| ribonuclease PH [Synechococcus sp. PCC 7002] gi|169886349|gb|ACB00063.1| ribonuclease PH [Synechococcus sp. PCC 7002] Length = 240 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 147/239 (61%), Gaps = 6/239 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL R +Q+R +K+A+ S L GDT +L T ++EE VP ++R++ GW+TA Sbjct: 5 RLDNRFFDQLRPFKFELDFTKFAQASVLTSCGDTKVLCTVSVEEGVPPFLRDSGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+P +T R +RE + + GR+QEIQR+IGR+LR+ +DL ALG R I ID DV+QA Sbjct: 65 EYRMMPGATPERQRREFM--KLSGRTQEIQRLIGRSLRAAIDLKALGERTITIDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT AITG +V L + + + S ++ VAAIS G++ G +DL+Y E Sbjct: 123 DGGTRTTAITGGYVGLAIACERLVK-AGILGKSPII-APVAAISVGLIAGQAYLDLNYLE 180 Query: 182 DSTIDVDANFVMTDSG--HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D DVD N VM +++EVQG+AE ++++ +L++A+ I ++ LQ I Sbjct: 181 DVAADVDFNVVMIGGQGLNLIEVQGTAEAGSYNRAQLNQILDVAEKGIQTIMTLQTKAI 239 >gi|297622726|ref|YP_003704160.1| ribonuclease PH [Truepera radiovictrix DSM 17093] gi|297163906|gb|ADI13617.1| ribonuclease PH [Truepera radiovictrix DSM 17093] Length = 236 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 96/220 (43%), Positives = 137/220 (62%), Gaps = 10/220 (4%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWITAE 62 GRQ Q+REI +T +++AEGS LV++GDT +L T T+E K+P +R K GW+TAE Sbjct: 4 GRQPFQLREIRVTPGYNRFAEGSALVEWGDTRVLATVTVENKLPPHLRGKKGRVGWLTAE 63 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122 Y MLPRST R +RE + GGRS EIQR+IGR+LRSV DL+ + + +D DV+QAD Sbjct: 64 YAMLPRSTAERTQRERLYA--GGRSLEIQRLIGRSLRSVTDLTLFHGQTLTVDVDVLQAD 121 Query: 123 GGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 GGTR A I + ALH + + +++ L+ VAA+S G++ G ++DLD+ Sbjct: 122 GGTRCAGILAGYAALHHAAGRLVRKGALDEWPLTH----EVAAVSVGVVRGETLLDLDFH 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 ED+ ++D N V T G +VEVQGS E + ++ Sbjct: 178 EDAAAEIDLNVVATADGKLVEVQGSGEERPIDAGRYVELV 217 >gi|289644629|ref|ZP_06476695.1| ribonuclease PH [Frankia symbiont of Datisca glomerata] gi|289505557|gb|EFD26590.1| ribonuclease PH [Frankia symbiont of Datisca glomerata] Length = 234 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/228 (42%), Positives = 135/228 (59%), Gaps = 7/228 (3%) Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 +++TR +AEGS L++FG T +L A++ E VP W + + GW+TAEY MLPR+T R Sbjct: 1 MNITRGWQDHAEGSALIEFGRTRVLCAASVTEGVPRWRKGSGLGWVTAEYSMLPRATNTR 60 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 RE+V GR GGR+ EI R+IGR+LR+ +DL LG I IDCDV+ ADGGTRTA+ITGA Sbjct: 61 NDRESVRGRIGGRTHEISRLIGRSLRTCIDLKILGENTIAIDCDVLVADGGTRTASITGA 120 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 +VAL D + + + V A P++DL Y EDS D D N + Sbjct: 121 YVALSDACGWLGRPDALIRSVAAVSVGVVAGR-------PLLDLAYDEDSGADTDMNVIC 173 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 T G VEVQG+AE F + +L+LA A L ++Q+ ++ Sbjct: 174 TGDGGFVEVQGTAEGLPFDRAMLDQLLDLAVGGCARLTEVQRAALAGP 221 >gi|149924421|ref|ZP_01912786.1| ribonuclease PH [Plesiocystis pacifica SIR-1] gi|149814728|gb|EDM74302.1| ribonuclease PH [Plesiocystis pacifica SIR-1] Length = 248 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 105/252 (41%), Positives = 150/252 (59%), Gaps = 23/252 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +Q+R ++LT + A+GS L+ G T +L TA++E + P W+ + GW+T Sbjct: 1 MRFDGRSNDQLRPLTLTPGFTSAADGSVLIATGGTRVLCTASVESRTPSWL--SSGGWVT 58 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSRQIIIDC 116 AEY MLP +T R R+A GR++EIQR+IGR+LR+ VDLS L G I+ DC Sbjct: 59 AEYAMLPGATRPRGGRKA-----NGRAKEIQRLIGRSLRAAVDLSKLVGPDGGVSIVCDC 113 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYP 173 DVI+ADGGTRTAAITGAWVAL L+ + + + VAA+S G++ P Sbjct: 114 DVIEADGGTRTAAITGAWVALELALRRLVAGGKLSEHPGI--APVAAVSVGVIPVEGSEP 171 Query: 174 --IVDLDYGEDSTIDVDANFVM-----TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ++DL Y EDS VD N VM + +VE+QG+ E+ FS++ ML+LA+ Sbjct: 172 EVMLDLPYSEDSRAIVDLNVVMRRAPEGGTPRLVEIQGTGEQGDFSREQLNRMLDLAEGG 231 Query: 227 IADLIKLQKDVI 238 I +L+ Q+ + Sbjct: 232 ITNLLAGQQAAL 243 >gi|162456258|ref|YP_001618625.1| ribonuclease PH [Sorangium cellulosum 'So ce 56'] gi|161166840|emb|CAN98145.1| ribonuclease PH [Sorangium cellulosum 'So ce 56'] Length = 257 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 107/242 (44%), Positives = 138/242 (57%), Gaps = 7/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R + + + AEGS L + G T +L TA++E VP W+ GW+TA Sbjct: 3 RPDGRALDVHRPVEMILGFHRNAEGSVLYRAGRTVVLCTASVEPTVPAWMMGKGAGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGR---QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 EY M PRS+ R RE GR GR+QEIQR+IGRALR+ +DL LG + I IDCDV Sbjct: 63 EYQMHPRSSPAR--REPRDGRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDCDV 120 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ++ADGGTRTA+IT +VAL L M + + VL+ VAAIS G L G +DL Sbjct: 121 LEADGGTRTASITAGFVALALALDRMRAAGSLE--APVLRDQVAAISVGHLPGGLALDLV 178 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS+ VD N V T G IVEVQ +AE + M +LA +A L Q + Sbjct: 179 YTEDSSARVDMNVVATAVGSIVEVQATAEDEAIPRAELDRMTDLALAGVASLASAQHRAL 238 Query: 239 SN 240 S+ Sbjct: 239 SS 240 >gi|318042724|ref|ZP_07974680.1| ribonuclease PH [Synechococcus sp. CB0101] Length = 244 Score = 174 bits (442), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 4/224 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R +A S V G T ++ + LEE VP W + + GW++A Sbjct: 7 RSDGRSPSDLRPTRFDWDPMGFALSSVTVHTGRTAVICSVCLEEDVPKWRQGSGKGWLSA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +Y +LP ST +R RE + + GR+QEIQR+I R+LR+ +DL ALG R + IDCDV+QA Sbjct: 67 DYRLLPASTPSRQPRELM--KLSGRTQEIQRLIARSLRACLDLEALGERSLHIDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTR+A+ITGAW AL L+ +E + +L+ VAA+S G++ ++DLDY E Sbjct: 125 DAGTRSASITGAWAALALGLRRLE-ARGVLNGTPMLE-QVAAVSVGLVGSQALLDLDYSE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 DS +VD N VM G ++EVQG+AE A FS+ +L+LA + Sbjct: 183 DSRAEVDLNVVMNSQGQLLEVQGTAEGAPFSRQQLNQLLDLADE 226 >gi|17227565|ref|NP_484113.1| ribonuclease PH [Nostoc sp. PCC 7120] gi|21759403|sp|Q8Z0M2|RNPH_ANASP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|17135047|dbj|BAB77593.1| ribonuclease PH [Nostoc sp. PCC 7120] Length = 247 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 137/223 (61%), Gaps = 4/223 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++R I+ + +++A GS L G+T +L T ++ E VP ++ + GW+TA Sbjct: 5 RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVAESVPKFLTGSGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ +D ALG R + +D DV+QA Sbjct: 65 EYRMLPSATQQRHERELL--KLSGRTQEIQRLIGRSLRAALDFEALGERTLTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITG +VAL + + + L G +AA+S G+L +DL+Y E Sbjct: 123 DAGTRTAAITGGFVALAEAISQL--LQRGVLERSPLCGQIAAVSVGLLEQEAYLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 D VD N VM + I+EVQG+AE +FS+ +L+ A+ Sbjct: 181 DVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAE 223 >gi|237739458|ref|ZP_04569939.1| ribonuclease PH [Fusobacterium sp. 2_1_31] gi|229423066|gb|EEO38113.1| ribonuclease PH [Fusobacterium sp. 2_1_31] Length = 171 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 86/169 (50%), Positives = 117/169 (69%), Gaps = 2/169 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T GW+T Sbjct: 2 LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA G+ GR+ EIQR+IGRALRS +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ADGGTRT +ITG +VAL ++ + + L +VAAIS G + Sbjct: 122 ADGGTRTTSITGGYVALALAIKKL--LKEEILEENPLIANVAAISVGKI 168 >gi|169829487|ref|YP_001699645.1| ribonuclease PH [Lysinibacillus sphaericus C3-41] gi|168993975|gb|ACA41515.1| Ribonuclease PH [Lysinibacillus sphaericus C3-41] Length = 196 Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 122/187 (65%), Gaps = 7/187 (3%) Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 WITAEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCD Sbjct: 7 WITAEYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCD 66 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGY-PI 174 VIQADGGTRTA+ITGA+VA+ + E KF ++ L AA S G++ + Sbjct: 67 VIQADGGTRTASITGAFVAMTQAIAKFAEEKPFVKFPVTDFL----AATSVGIVEEQGAV 122 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 +DL+Y ED VD N VMT +G VE+QG+ E ATFS++ +L L + I L++LQ Sbjct: 123 LDLNYVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQLVELQ 182 Query: 235 KDVISNE 241 K ++ + Sbjct: 183 KTALAEQ 189 >gi|320104936|ref|YP_004180527.1| RNAse PH [Isosphaera pallida ATCC 43644] gi|319752218|gb|ADV63978.1| RNAse PH [Isosphaera pallida ATCC 43644] Length = 240 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 106/242 (43%), Positives = 142/242 (58%), Gaps = 8/242 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + R + + GS LV+ G T +L TA L ++VP ++ GW+T Sbjct: 2 MRHDGRTPQEIRPVRFERGFAAASAGSVLVRSGSTVILVTANLVDQVPPFLEGRGTGWLT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST +R R+ GR EIQR+IGR+LR++VDL LG R + +D DVIQ Sbjct: 62 AEYAMLPGSTPSRKPRKV-----DGRCTEIQRLIGRSLRAMVDLERLGPRTLHLDADVIQ 116 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAIT A VA D L C + +LKG +AA+S G++ G ++DLDY Sbjct: 117 ADGGTRTAAITAACVATADALNK---CLGAEEARAILKGRLAAVSVGVVDGVGLLDLDYS 173 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N V +VEVQG+AE A F + +L+LA I L+ LQ D + Sbjct: 174 EDVRAEVDLNVVRLGPRGLVEVQGTAEGAPFDRRRLEELLDLADQGIDRLMALQLDAVGP 233 Query: 241 EV 242 V Sbjct: 234 GV 235 >gi|126640155|ref|YP_001083139.1| ribonuclease PH [Acinetobacter baumannii ATCC 17978] Length = 174 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 92/174 (52%), Positives = 117/174 (67%), Gaps = 2/174 (1%) Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQADGG Sbjct: 1 MLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG 60 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTA+ITGA VAL D + + + K LKG VAAIS GM ++DL Y EDS Sbjct: 61 TRTASITGAAVALVDAMNVL--LAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYEEDSN 118 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D N VMT +G +E+QG+AE F++ AML +A+ IA+LIK Q++ + Sbjct: 119 CQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEAL 172 >gi|15806593|ref|NP_295308.1| ribonuclease PH [Deinococcus radiodurans R1] gi|21759421|sp|Q9RU11|RNPH_DEIRA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|6459349|gb|AAF11146.1|AE002002_4 ribonuclease PH [Deinococcus radiodurans R1] Length = 246 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 132/229 (57%), Gaps = 6/229 (2%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR R +S+ R V+ +A GS +K G T +L T TL++K +R K GW+TAEY Sbjct: 11 GRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEYS 70 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPRST +R RE Q GR EIQR++GRALRS +DL ++ + +DCDV+ ADGG Sbjct: 71 MLPRSTTDRQARE--RNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGG 128 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-VAAISCGMLCGYPIVDLDYGEDS 183 TR A++ ALHD + N QLS+ H V AIS G++ VDLDY ED Sbjct: 129 TRVASVLAGHAALHDFCDRL---INSGQLSEWPIVHNVGAISVGLIGDELRVDLDYEEDK 185 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D N + TD+G +VEVQG AE + D + +L+ + D+++ Sbjct: 186 VARADLNVIATDTGLLVEVQGGAELGPITVDEYTRLLSCGVASVQDVMR 234 >gi|294668514|ref|ZP_06733611.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309477|gb|EFE50720.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 157 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 77/152 (50%), Positives = 112/152 (73%), Gaps = 3/152 (1%) Query: 4 SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63 + R + +R + +T +A+GS L++ G+T ++ TA+++E VP ++R GW+TAEY Sbjct: 7 TSRAADALRAVKITPHFLPHADGSVLIECGNTKVICTASIDESVPPFLRGKGQGWVTAEY 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 GMLP ST R++REA +G+QGGR+QEIQR+IGR+LR+ VD++ LG RQI+IDCDVIQADG Sbjct: 67 GMLPASTATRMRREAAAGKQGGRTQEIQRLIGRSLRAAVDMAKLGERQILIDCDVIQADG 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155 GTRTA+I+GA+VAL M++C L + Sbjct: 127 GTRTASISGAYVALA---LAMKNCFRTVGLPK 155 >gi|226357252|ref|YP_002786992.1| tRNA nucleotidyltransferase [Deinococcus deserti VCD115] gi|226319242|gb|ACO47238.1| putative tRNA nucleotidyltransferase (Phosphate-dependent exonuclease) (Ribonuclease PH) (RNase PH) [Deinococcus deserti VCD115] Length = 249 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 96/218 (44%), Positives = 126/218 (57%), Gaps = 6/218 (2%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR + R +S+ R V+ +A GS + G T +L T TLE+K +R K GW+TAEY Sbjct: 14 GRGLLEPRPVSVKRGVNPHAPGSAHLIMGRTEILATVTLEDKPAPHMRGKKEGWLTAEYS 73 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T +R RE Q GR EIQR++GRALR+ VDL ++ I +DCDV+ ADGG Sbjct: 74 MLPRATNDRQARE--RNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIYVDCDVLVADGG 131 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYGEDS 183 TR A+I ALHD + N QLS+ L V AIS G++ VDLDY ED Sbjct: 132 TRVASILAGHAALHDFCDRL---INSGQLSEWPLTHKVGAISVGLVGEEVRVDLDYAEDK 188 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 D N V TD+G ++EVQG AE S + +L+ Sbjct: 189 VARADLNVVATDTGLVIEVQGGAEEGPISLAEYSQLLH 226 >gi|291533813|emb|CBL06926.1| ribonuclease PH [Megamonas hypermegale ART12/1] Length = 153 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 77/151 (50%), Positives = 105/151 (69%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R +Q+R +T+ KY GS L++ G+T ++ AT+++ VP ++R + GW+ A Sbjct: 3 RIDRRNADQLRRFKITKYFQKYPAGSVLIETGNTKVICAATIQDGVPSFLRGSGTGWLNA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP +T R REA GRQ GR+QEIQR+IGR LRSV+D ALG R +IIDCDVIQA Sbjct: 63 EYSLLPSATLTRSPREASRGRQNGRTQEIQRLIGRCLRSVMDFKALGERTVIIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQ 152 DGGTRTA+ITGA+VAL + L + + N F Sbjct: 123 DGGTRTASITGAFVALAEALATIYNPKNHFH 153 >gi|161616815|ref|YP_001590779.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161366179|gb|ABX69947.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 174 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/176 (51%), Positives = 115/176 (65%), Gaps = 2/176 (1%) Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQADGG Sbjct: 1 MLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG 60 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTA+ITGA VAL D L + +N + +KG VAA+S G++ G I DL+Y EDS Sbjct: 61 TRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSA 118 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 119 AETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 174 >gi|213417938|ref|ZP_03351026.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 148 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/150 (55%), Positives = 105/150 (70%), Gaps = 2/150 (1%) Query: 37 LLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR 96 +L TA++EE VP +++ GWITAEYGMLPR+T R REA G+QGGR+ EIQR+I R Sbjct: 1 MLCTASIEEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIAR 60 Query: 97 ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156 ALR+ VDL LG I +DCDVIQADGGTRTA+ITGA VAL D L + +N + Sbjct: 61 ALRAAVDLKTLGEFTITLDCDVIQADGGTRTASITGACVALADALNKL--VANGKLKTNP 118 Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 +KG VAA+S G++ G I DL+Y EDS + Sbjct: 119 MKGMVAAVSVGIVNGEAICDLEYVEDSAAE 148 >gi|225023880|ref|ZP_03713072.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC 23834] gi|224943354|gb|EEG24563.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC 23834] Length = 167 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 2/158 (1%) Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++REA G+Q GR+QEIQR+IGR+LR+ VDLS LG RQI+IDCDVIQADGGTRTA+ITGA Sbjct: 1 MRREAAQGKQSGRTQEIQRLIGRSLRAAVDLSQLGERQILIDCDVIQADGGTRTASITGA 60 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 +VALH + + + K + + + VAA+S G++ G P++DLDY EDS D D N VM Sbjct: 61 YVALHLAIGKLL-AAGKLAHNPI-REAVAAVSLGIVGGVPLLDLDYPEDSGCDSDINLVM 118 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 T SG+I+E+QG+AE FS +L L + I +L+ Sbjct: 119 TASGNIIEIQGTAEGDAFSPAALTQLLALGQKGIVELL 156 >gi|302341929|ref|YP_003806458.1| ribonuclease PH [Desulfarculus baarsii DSM 2075] gi|301638542|gb|ADK83864.1| ribonuclease PH [Desulfarculus baarsii DSM 2075] Length = 232 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 140/233 (60%), Gaps = 12/233 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR QMR + ++ V+ YAEGS + FG T +L TA++E+ P ++ GWITA Sbjct: 3 RIDGRNPGQMRPVVISGGVNPYAEGSAICAFGQTKVLCTASVEQGAPRFLEGAGQGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R R+ Q GR++EI R++GRALR+ DL+AL I IDCDV+ A Sbjct: 63 EYAMLPRATHTRTGRDHA---QAGRAKEISRLVGRALRAAADLAALDGYTIRIDCDVLVA 119 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA++G WVAL L+ + + V A+S G + G +VDL Y E Sbjct: 120 DGGTRTAAVSGGWVALALALRGLGLQPPR---------QVMALSAGRVDGRLLVDLCYAE 170 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 DS+ ++D N V+ G ++E+QG+ ER FS + ++ +++ D++ Q Sbjct: 171 DSSAELDLNMVLAADGQLIEIQGTGERGVFSPEELMELIAISRQAAGDIVAAQ 223 >gi|27528790|emb|CAD29620.1| hypothetical protein [Streptomyces olivaceoviridis] Length = 180 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 85/170 (50%), Positives = 111/170 (65%) Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T R RE+V GR GGR+ EI R+IGR+LR+VVD ALG I++DCDV+QADGG Sbjct: 1 MLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVVDYKALGENTIVLDCDVLQADGG 60 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTAAITGA+VAL D + + + + G V+A+S G++ G P++DL Y ED Sbjct: 61 TRTAAITGAYVALADAVAWAQGKKLIRAGRKPITGTVSAVSVGIVGGVPLLDLCYEEDVK 120 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D D N V T G VEVQG+AE F++D A+L+LA +L LQ Sbjct: 121 ADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVSGCTELAALQ 170 >gi|111220956|ref|YP_711750.1| ribonuclease PH [Frankia alni ACN14a] gi|111148488|emb|CAJ60159.1| ribonuclease PH [Frankia alni ACN14a] Length = 204 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/199 (45%), Positives = 119/199 (59%), Gaps = 21/199 (10%) Query: 47 VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106 VP W + + GW+TAEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL+A Sbjct: 5 VPRWRKGSGLGWVTAEYSMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRACIDLAA 64 Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166 LG I IDCDV+ ADGGTRTAAITGA+VAL D + + G AAI+ Sbjct: 65 LGENTIAIDCDVLLADGGTRTAAITGAYVALVDAARWL--------------GRPAAITT 110 Query: 167 GMLC-------GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219 + G P++DL Y EDST D D N V T + VEVQG+AE F + + Sbjct: 111 SVAAVSVGVVRGEPMLDLAYTEDSTADTDMNVVCTGADGFVEVQGTAEGVPFDRAMLDNL 170 Query: 220 LNLAKDRIADLIKLQKDVI 238 L+LA A L ++Q + + Sbjct: 171 LDLAVFGCAQLAEIQAEAL 189 >gi|94986185|ref|YP_605549.1| ribonuclease PH [Deinococcus geothermalis DSM 11300] gi|94556466|gb|ABF46380.1| RNAse PH [Deinococcus geothermalis DSM 11300] Length = 237 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 130/229 (56%), Gaps = 6/229 (2%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR R +S+ R V+ +A GS ++ G T +L T ++E+K +R K GW+TAEY Sbjct: 8 GRDALTPRPLSVRRGVNPHAPGSVHLQLGRTEILATVSVEDKPAPHMRGKKEGWLTAEYA 67 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T +R RE Q GR EIQR++GRALR+ +DL + + +DCDV+ ADGG Sbjct: 68 MLPRATTDRQARE--RNLQNGRRHEIQRLLGRALRAGIDLRHFRGQTLYVDCDVLVADGG 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-VAAISCGMLCGYPIVDLDYGEDS 183 TR A++ + ALHD + + +LS+ H V A+S G++ VDLDY ED Sbjct: 126 TRVASVLAGYAALHDFADRL---IHSGKLSEWPLVHAVGAVSVGLVGDELRVDLDYAEDK 182 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D N V TDSG ++E QG AE + + +L + + + L++ Sbjct: 183 AARADLNVVATDSGLLIEAQGGAEEGPITPAEYVRLLTVGVEAVGALLR 231 >gi|320335008|ref|YP_004171719.1| ribonuclease PH [Deinococcus maricopensis DSM 21211] gi|319756297|gb|ADV68054.1| ribonuclease PH [Deinococcus maricopensis DSM 21211] Length = 236 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + R + +TR V+ +AEGS L+ G T +L T T++ KVP +R K GW+ AEY M Sbjct: 5 RPTTEPRPLHVTRGVNMHAEGSALLHLGRTQVLATVTVDPKVPPHMRGKKTGWLMAEYSM 64 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +PR+T +R R+ GR EIQR++GRA R+ VDL R +++DCDV+QADGGT Sbjct: 65 MPRATQDRTPRD--RNLSNGRRHEIQRLLGRAFRATVDLRHFRDRTLVVDCDVLQADGGT 122 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYGEDST 184 R A++ + AL D + + +LS+ L V A S G++ G VDLDY ED Sbjct: 123 RVASVLAGYAALWD---YADRLIRTGKLSEWPLLHEVGACSVGLVGGEVRVDLDYLEDVQ 179 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + D N V T SG ++E QG AE A + + +L D Sbjct: 180 AEADLNVVATSSGLLIEAQGGAEGAPIAPGVYEQLLRAGLD 220 >gi|313680799|ref|YP_004058538.1| RNAse PH [Oceanithermus profundus DSM 14977] gi|313153514|gb|ADR37365.1| RNAse PH [Oceanithermus profundus DSM 14977] Length = 240 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 125/231 (54%), Gaps = 6/231 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R + +T R YAEGS LV+ G T +L +L VP ++ + GW+ A Sbjct: 3 RPDGRSPTGRRPLKITPRYLDYAEGSALVELGRTRVLVAVSLTPGVPRHMQGKRSGWLMA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LPRST +R +RE + GGR+QE+QR +GRA R+ VDL L ++ I++D DVIQA Sbjct: 63 EYNLLPRSTESRTQRERF--KLGGRTQEVQRFLGRAFRAAVDLDLLPNQTIVVDADVIQA 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDYG 180 DGGTR AAI G + AL +Q + +L AAIS G G + VDLD Sbjct: 121 DGGTRVAAILGGYAAL---VQAFDALVRAGRLDDWPLTEFAAISLGWAGGDEVLVDLDAR 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 ED + D V T G ++E+ G E + + M++ +I L+ Sbjct: 178 EDDRVHADLTVVGTAEGELIEIHGGGEGRPVPRAIYDRMVDEGLRQIPGLV 228 >gi|297565611|ref|YP_003684583.1| ribonuclease PH [Meiothermus silvanus DSM 9946] gi|296850060|gb|ADH63075.1| ribonuclease PH [Meiothermus silvanus DSM 9946] Length = 235 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 128/234 (54%), Gaps = 11/234 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +MR +S+ + YAEGS LV+ G T +L T +L + VP +R + GW+ Sbjct: 3 RKDGRAPLEMRPLSIHTGYNLYAEGSALVELGHTKVLVTVSLTDGVPRHVR-PREGWLMT 61 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LPRST R +RE + GR+ EIQR +GRA R+V+DLS+L + ++ID DV+QA Sbjct: 62 EYNLLPRSTKERKERE--RQKLSGRTAEIQRFMGRAFRAVLDLSSLPGKTVVIDADVLQA 119 Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLD 178 DGGTR A++ G + ALH L M +++ L + AAIS G I +DL Sbjct: 120 DGGTRVASLIGGYAALHQALDKMVRSGALDEWPLQE-----FAAISLGWFGEERILLDLT 174 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + ED D V T G ++EV G E Q + ML I +L++ Sbjct: 175 HVEDENAWADLTVVATQGGEVIEVHGGGEGRAVPQPVYKQMLETGLGFIPELVR 228 >gi|291295492|ref|YP_003506890.1| ribonuclease PH [Meiothermus ruber DSM 1279] gi|290470451|gb|ADD27870.1| ribonuclease PH [Meiothermus ruber DSM 1279] Length = 238 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 134/244 (54%), Gaps = 11/244 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++R ++L YAEGS LV+ G T +L +L + VP + + + GW+ A Sbjct: 3 RKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDGVPRHV-SGREGWLMA 61 Query: 62 EYGMLPRSTGNRVKREAVSGRQ--GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY +LPRST R +RE RQ GR+ EIQR +GRA R+ +DLS L ++ ++ID DVI Sbjct: 62 EYNLLPRSTKERKERE----RQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADVI 117 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLD 178 QADGGTR A++ G + ALH M+ N+ +L + AA+S G + ++DL Sbjct: 118 QADGGTRVASLLGGYAALHMA---MDRLVNQGKLDEWPLTEFAAVSVGWMSDDSLLLDLT 174 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D V T SG I+E+ G+ E + + AML + I +L++ + Sbjct: 175 QIEDENAWADLTVVATQSGDIIELHGAGEGRPVPRSTYQAMLEMGLAHIPELVRRVHAQL 234 Query: 239 SNEV 242 N V Sbjct: 235 KNRV 238 >gi|254468299|ref|ZP_05081705.1| ribonuclease PH [beta proteobacterium KB13] gi|207087109|gb|EDZ64392.1| ribonuclease PH [beta proteobacterium KB13] Length = 161 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 2/160 (1%) Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++REA G+Q GR+QEIQR+IGR+LR+++DL+ +G + +DCDV+QADGGTRTA+ITGA Sbjct: 1 MQREAARGKQSGRTQEIQRLIGRSLRAMIDLTKIGENTLQVDCDVLQADGGTRTASITGA 60 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 A+ D +++M K + +AAIS G++ +VDLDY EDS + D N VM Sbjct: 61 ACAIEDAVEYM--LKAKLISESPIIKKIAAISAGIVDSKVLVDLDYDEDSNCETDMNIVM 118 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 T+ +E+QG+AE FSQD +L L+ D I + ++ Sbjct: 119 TEDKQFIEIQGTAEGNPFSQDELNEILTLSSDAIQSIFQI 158 >gi|328949911|ref|YP_004367246.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884] gi|328450235|gb|AEB11136.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884] Length = 240 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 126/244 (51%), Gaps = 10/244 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +MR + +T + +AEGS LV+ G T +L T ++ + VP + + GW+ Sbjct: 3 RKDGRGPLEMRPLVITPNYNAFAEGSALVELGQTRVLATVSITDGVPRHVHPRRSGWLMC 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LPR+T R +RE + GGR+QE+QR +GRA R+ +DL AL + +I+D DV+QA Sbjct: 63 EYSLLPRATPTRTQRERF--KLGGRTQEVQRFLGRAFRAALDLKALAGKTVIVDADVLQA 120 Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLD 178 DGGTR A+I G + AL L M + + + L + A+S G ++DL Sbjct: 121 DGGTRVASILGGYAALFLALDRMVRDGTLDDWPLLE-----FGAVSLGWFGEDRVLLDLT 175 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D V T G ++E+ G E + + M+ + I L+ + Sbjct: 176 AIEDENAWADLTVVATRDGELIEIHGGGEGRPVPRAVYERMVAAGLEVIPSLVAAVHRAV 235 Query: 239 SNEV 242 S + Sbjct: 236 SKPL 239 >gi|3341558|emb|CAA13123.1| z11f [Vibrio cholerae] Length = 138 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 4/136 (2%) Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKG 159 +VDL A+G I +DCDVIQADGGTRTA+ITGA VAL D H+ K QL + +KG Sbjct: 1 MVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKG 57 Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219 HVAA+S G+L + DL+Y EDS D D N VMT+ G ++E+QG+AE FS + + Sbjct: 58 HVAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLEL 117 Query: 220 LNLAKDRIADLIKLQK 235 L +AK IAD++ +QK Sbjct: 118 LAVAKKGIADIVAVQK 133 >gi|6433781|emb|CAB60663.1| RnpH protein [Bradyrhizobium japonicum] Length = 86 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 51/86 (59%), Positives = 67/86 (77%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GW+T Sbjct: 1 MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGR 86 AEYGMLPR+T R +REA +G+Q GR Sbjct: 61 AEYGMLPRATSERTRREASAGKQSGR 86 >gi|213854161|ref|ZP_03382693.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 86 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 51/84 (60%), Positives = 65/84 (77%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68 NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWITAEYGMLPR Sbjct: 3 NQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPR 62 Query: 69 STGNRVKREAVSGRQGGRSQEIQR 92 ST R REA G+QGGR+ EIQR Sbjct: 63 STHTRNAREAAKGKQGGRTMEIQR 86 >gi|167464772|ref|ZP_02329861.1| ribonuclease PH [Paenibacillus larvae subsp. larvae BRL-230010] Length = 80 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 40/78 (51%), Positives = 58/78 (74%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ N++R + +T +K+AEGS L++ GDT ++ TAT+EE+VP +++N GW+T Sbjct: 1 MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATIEERVPPFLKNEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREA 78 AEY MLPR+T R +REA Sbjct: 61 AEYSMLPRATQVRNQREA 78 >gi|218509466|ref|ZP_03507344.1| ribonuclease PH [Rhizobium etli Brasil 5] Length = 60 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 39/60 (65%), Positives = 49/60 (81%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LE+K P W+RNT GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEDKTPPWLRNTAKGWVT 60 >gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456] gi|254782534|sp|A2BKC0|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1 gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456] Length = 255 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 29/243 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R GR Q+R I + V A+GS LV++G T ++ E P + I Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDV 118 Y M P ST R K A + R+ E+ ++I AL +VV +S L R I + +V Sbjct: 84 RCRYHMAPFSTAER-KTPAPTRRE----VELSKVIREALEAVV-ISELYPRTAIDVYMEV 137 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q+DGGTRTAAIT A +AL D M D VA ++ G + G ++D+D Sbjct: 138 LQSDGGTRTAAITAASLALADAGIAMRDL-------------VAGVAVGKVDGVLVLDID 184 Query: 179 YGEDSTIDVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED+ + D M D ++++ G + D F L LA+ I + LQK Sbjct: 185 EIEDNYAEADMPVAMAPSLDKVLLLQLNG-----VLTHDEFVKALELARKGIQVIYNLQK 239 Query: 236 DVI 238 + + Sbjct: 240 EAL 242 >gi|330952126|gb|EGH52386.1| ribonuclease PH [Pseudomonas syringae Cit 7] Length = 92 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 50/68 (73%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 25 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 84 Query: 62 EYGMLPRS 69 EYGMLPR+ Sbjct: 85 EYGMLPRA 92 >gi|218884635|ref|YP_002429017.1| Probable exosome complex exonuclease 1 [Desulfurococcus kamchatkensis 1221n] gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus kamchatkensis 1221n] Length = 242 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 23/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R+ GR+ ++R + + V K A GS LV++G+T L E +P I + Sbjct: 12 LRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAIL 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST R K A S R+ E+ ++I AL SVV S I + +++ Sbjct: 72 RVRYHMAPFSTTER-KSPAPSRRE----IELSKVIREALESVVFTSQFPRASIDVFIEIL 126 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRT +T A +AL D M D V ++ G + G ++D++ Sbjct: 127 QADGGTRTTGLTAASLALADAGIPMRDL-------------VIGVAVGKVDGVLVLDINE 173 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D +M ++G IV +Q + + F L++A + + K K+ + Sbjct: 174 LEDEYGEADLPVGIMPNTGEIVLLQLN---GVLTSGEFKQALDMAYKGVEQIYKTAKEAM 230 >gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group] gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group] Length = 242 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 25/227 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58 R+ GR+ N+MR++ V A+GS L + G+T ++ +V + N+K Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKDAL 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R +R+ R RS EI +I + + + + + QI I V Sbjct: 70 VRCEYRMADFSTGDR-RRKPKGDR---RSTEISLVIRQTMEASILTHLMPRSQIDIFVQV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR A I A +AL D M D V + S G LC P++DL+ Sbjct: 126 LQADGGTRAACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172 Query: 179 YGEDST--IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 Y EDS DV F +T + +Q A+ D F +++LA Sbjct: 173 YIEDSAGGPDVTVGF-LTKMDKVTLLQMDAK---LPMDTFETVMDLA 215 >gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM 6242] gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides burtonii DSM 6242] Length = 343 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 23/206 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +++R +++ V A+GSC +++G+ +L ++ P ++ + Sbjct: 14 LRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPSEALV 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M S +R+ R G RS EI ++ G A +VV I + + Sbjct: 74 RYRYNMAAFSVEDRI-------RPGPSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAE 126 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+QAD GTRTAAI A +AL D M KG VAA + G + G ++DL Sbjct: 127 VLQADAGTRTAAINAATLALVDAGIPM-------------KGLVAACAVGKVDGQLVIDL 173 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQ 203 + ED+ D D MT+ G I +Q Sbjct: 174 NKPEDNYGDADLPIAMTEDGEITLLQ 199 >gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon] gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon] Length = 242 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 22/222 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RLSGR ++R I + V K A+GSC + GD L E P +N K + Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAVYGPREMHPRHFQNAKMAVVK 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S +R KR R SQEI + +AL V+ I + +V+Q Sbjct: 74 YRYNMAPFSVDDR-KRPGPDRR----SQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A VAL D M D V++++ G + G ++DLD Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175 Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAM 219 ED+ + D M T++ ++++ G ++ F + AM Sbjct: 176 EDNFGEADMPIAMIARTNTITLLQMDGRLKKEEFERGLKIAM 217 >gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10] Length = 242 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 108/238 (45%), Gaps = 27/238 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RLSGR ++R I + V K A+GSC + G+ ++ E P +N K + Sbjct: 14 RLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGVYGPREMHPRHFQNAKMAVVK 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S +R KR R SQEI + +AL V+ I + +V+Q Sbjct: 74 YRYNMAPFSVDDR-KRPGPDRR----SQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A VAL D M D V++++ G + G ++DLD Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175 Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED+ + D M T++ ++++ G ++ F + L LA D + +LQK Sbjct: 176 EDNFGEADMPIAMIARTNTITLLQMDGRLKKEEFERG-----LKLAMDGSRKIYELQK 228 >gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9] Length = 242 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 22/222 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RLSGR ++R I + + K A+GSC + G+ L E P +N K + Sbjct: 14 RLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAVYGPREMHPRHFQNAKRAVVK 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S +R KR R SQEI + +AL V+ I + +V+Q Sbjct: 74 YRYNMAPFSVDDR-KRPGPDRR----SQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A VAL D M D V++++ G + G ++DLD Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175 Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAM 219 ED+ + D M T++ ++++ G ++ F + AM Sbjct: 176 EDNFGEADVPIAMIARTNTITLLQMDGRLKKEEFERGLKLAM 217 >gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays] gi|194692034|gb|ACF80101.1| unknown [Zea mays] Length = 242 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 19/185 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58 R+ GR+ N+MR++ V A+GS L + G+T ++ +V + N+K Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEAL 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R +R+ R RS EI +I + + + + + QI I V Sbjct: 70 VRCEYRMAEFSTGDR-RRKPKGDR---RSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR+A I A +AL D M D + + S G LC P++DL+ Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIAT-------------SCSAGYLCSTPLLDLN 172 Query: 179 YGEDS 183 Y EDS Sbjct: 173 YLEDS 177 >gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM 12710] gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM 12710] Length = 240 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 23/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ +++R I + V K A+GS V++G T ++ +V P + I Sbjct: 12 LRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRALI 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDV 118 Y M P ST +R K A S R+ E+ ++I AL S+V S L R I + +V Sbjct: 72 RCRYHMAPFSTSDR-KSPAPSRRE----IELSKVIREALESLV-FSELYPRTTIDVFIEV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTRT +T A +AL D M D VA ++ G + G ++D+D Sbjct: 126 LQADGGTRTTGLTAASLALADAGIPMRDL-------------VAGVAAGKVDGVLVLDID 172 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED +A+ + + I E+ F+ + F LNLAK + K+ K+ + Sbjct: 173 EVEDEY--GEADMPIGYAAGIDEIVLLQLNGVFTVEEFKEALNLAKRGAEQIYKIMKETL 230 >gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera aggregans DSM 11486] gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera aggregans DSM 11486] Length = 249 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 23/239 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RL GR+ +++R + + V K A GS LV++G T +L E +P I + Sbjct: 20 RLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRATLR 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R K A S R+ E+ ++I AL SVV I I +V+Q Sbjct: 80 VRYHMAPFSTSER-KSPAPSRRE----IELSKVIREALESVVFSEQFPRTSIDIFIEVLQ 134 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA +T A VAL D M+D V ++ G + G ++D+ Sbjct: 135 ADGGTRTAGLTAASVALADAGIPMKDL-------------VIGVAVGKIEGNLVLDISEL 181 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D + + G IV +Q + + + A + LA + + K+ K+ + Sbjct: 182 EDEYGEADLPLGIAPNIGEIVLLQLN---GVLTPEELKAGIELAWKGVDSIYKIAKEAL 237 >gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays] Length = 242 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 19/185 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58 R+ GR+ N+MR++ V A+GS L + G+T ++ +V + N+K Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEAL 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R +R+ R RS EI +I + + + + + QI I V Sbjct: 70 VRCEYRMAEFSTGDR-RRKPKGDR---RSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR+A I A +AL D M D + + S G LC P++DL+ Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIAT-------------SCSAGYLCSTPLLDLN 172 Query: 179 YGEDS 183 Y EDS Sbjct: 173 YLEDS 177 >gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6] Length = 242 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 22/222 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RLSGR ++R I + V K A+GSC + G+ + E P +N K + Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAVYGPREMHPRHFQNAKMAVVK 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S +R KR R SQEI + +AL V+ I + +V+Q Sbjct: 74 YRYNMAPFSVDDR-KRPGPDRR----SQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A VAL D M+D V++++ G + G ++DLD Sbjct: 129 SDAGTRTAGINAASVALADAGIPMKDL-------------VSSVAIGKIDGEVVLDLDAK 175 Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAM 219 ED+ + D M T++ ++++ G ++ F + AM Sbjct: 176 EDNFGEADMPIAMVARTNTITLLQMDGRLKKEEFERGLQLAM 217 >gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790] gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790] Length = 239 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 19/204 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR N+MR I +T V A+GS +++G ++ + E P +N + Sbjct: 12 LRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVK 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 A Y M S R KR R+ EI ++I AL S + + L +I + +V++ Sbjct: 72 ARYNMAGFSVEER-KRPG----PDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLE 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A++T A VA+ D M+D + G G ++DL Sbjct: 127 ADAGTRIASLTAASVAVADAGIPMKDLP-------------VGCTAGKANGKVVLDLSKD 173 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQ 203 ED+ D D ++ SG I+ +Q Sbjct: 174 EDNYGDADIPMAILPKSGKIILLQ 197 >gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor] gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor] Length = 242 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 19/185 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58 R+ GR+ N+MR++ V A+GS L + G+T ++ +V + N+ Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEAL 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R +R+ R RS EI +I + + + + + QI I V Sbjct: 70 VRCEYRMAEFSTGDR-RRKPKGDR---RSTEISLVIRQTMEASILTHLMPRSQIDIYVQV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR+A I A +AL D M D V + S G LC P++DL+ Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172 Query: 179 YGEDS 183 Y EDS Sbjct: 173 YLEDS 177 >gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28] gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28] Length = 246 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 103/242 (42%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWIT 60 R GR N+ R + + V AEGS LV +G+T +L +VP + + Sbjct: 15 RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M+P ST K S R+ EI ++I AL VV L I + +V+Q Sbjct: 75 VRYHMIPFSTSEGRKSPTPSRRE----IEISKVIRTALEPVVILERFPRTTIDVYIEVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG TR IT A +AL D M D + +S G + G IVDL+ Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDL-------------LVGVSVGKVSGTIIVDLNQL 177 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D +M G I +Q E ++ + LA + +LQKDV+ Sbjct: 178 EDQYGEGDMPLAIMYGRGLITLMQADGE---WTPTEVNQAVELAFKAAEQIYRLQKDVLK 234 Query: 240 NE 241 N+ Sbjct: 235 NK 236 >gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348] gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula DSM 5348] Length = 245 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RL GR+ +++R + + V K A+GS LV+ G+T ++ E P + + Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R + V R R E+ ++I AL S + + I + +VIQ Sbjct: 76 VRYHMTPFSTDER--KSPVPSR---REIELSKVIREALESSILVEQFPRSSIDVFMEVIQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A++ A +A+ D ++D +AA++ G G ++DL+ Sbjct: 131 ADAGTRLASLMAASLAVVDAGIPVKDV-------------IAAVAVGKADGVVVLDLNEP 177 Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D M S G I +Q + +Q F L LA I+ + L+K+V+ Sbjct: 178 EDMWGEADMPVAMLPSLGQITLIQLN---GNMTQQEFKQGLELAYKGISTIYNLEKEVLR 234 Query: 240 NE 241 N+ Sbjct: 235 NK 236 >gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor] gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor] Length = 242 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 19/185 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58 R+ GR+ N+MR++ + A+GS L + G+T ++ +V + N+ Sbjct: 10 FRVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEAL 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R +R+ R RS EI +I + + + + + QI I V Sbjct: 70 VRCEYRMAEFSTGDR-RRKPKGDR---RSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR+A I A +AL D M D V + S G LC P++DL+ Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172 Query: 179 YGEDS 183 Y EDS Sbjct: 173 YLEDS 177 >gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1] gi|29336899|sp|Q97BZ5|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1 gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1] Length = 248 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +RL GR N++R I + V A+GS +++G ++ +E P ++ H + Sbjct: 17 LRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVV 76 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 A Y M S R KR R + EI ++I AL S + + +I + +V+ Sbjct: 77 KARYNMAAFSVDER-KRPGPDRR----TMEISKVISEALSSSIMIEQFPRAEIDVYIEVL 131 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A +T A VAL D M D V + G + G+ ++DL Sbjct: 132 QADAGTRIAGLTAATVALADAGIPMRDM-------------VVGCTAGKVDGHIVLDLSK 178 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D +M +G IV +Q + ++D F+ ++ + + ++Q++ + Sbjct: 179 EEDNFGEADIPMAIMPKTGEIVLLQMDGD---VTEDEFYEATSMIIEATKKISQIQRNAL 235 Query: 239 SNE 241 N+ Sbjct: 236 LNK 238 >gi|218679365|ref|ZP_03527262.1| ribonuclease PH [Rhizobium etli CIAT 894] Length = 71 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 34/67 (50%), Positives = 51/67 (76%) Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 P++DLDY EDS+ + DANFVMT +G IVE+QG+AE F+++ F +++ LAK+ I +L+ Sbjct: 4 PVIDLDYLEDSSAETDANFVMTGAGGIVEIQGTAEGTPFTEEEFSSLMGLAKNGIGELVA 63 Query: 233 LQKDVIS 239 LQK I+ Sbjct: 64 LQKQAIA 70 >gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus marinus F1] gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus marinus F1] Length = 240 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 23/226 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ N++R I + V K A+GS V++G T ++ +V P + I Sbjct: 12 LRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRALI 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDV 118 Y M P ST +R K A S R+ E+ ++I AL S+V S L R I + +V Sbjct: 72 RCRYHMAPFSTSDR-KSPAPSRRE----IELSKVIREALESLV-FSELYPRTTIDVFIEV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTRT +T A +AL D M D VA ++ G + G ++D+D Sbjct: 126 LQADGGTRTTGLTAASLALADAGIPMRDL-------------VAGVAVGKVDGVLVLDID 172 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 ED +A+ + + I E+ + + F LNLAK Sbjct: 173 EVEDEY--GEADMPIGYAAGIDEIVLLQLNGVLTVEEFREALNLAK 216 >gi|255022817|ref|ZP_05294803.1| ribonuclease PH [Listeria monocytogenes FSL J1-208] Length = 119 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 7/116 (6%) Query: 130 ITGAWVALHDCLQHMEDCSN--KFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTID 186 +TGA++A+ + +++ KF + K +AA S G+L G ++DL+Y EDS Sbjct: 1 MTGAFIAMVMAIAKLDEAVPFAKFPV----KDFLAATSVGVLEEGGTVLDLNYVEDSAAQ 56 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + ++V Sbjct: 57 VDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 112 >gi|255644780|gb|ACU22892.1| unknown [Glycine max] Length = 190 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 22/186 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57 +RL GR+ +MR+I A+GS + + G+T ++ +V RN + H Sbjct: 9 LRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREV--QNRNQQISSHA 66 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + EY M STG+R+++ + RS EI +I + + + + L QI I Sbjct: 67 LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQ 122 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+QADGGTR+A I A +AL D M D V + S G L P++DL Sbjct: 123 VLQADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDL 169 Query: 178 DYGEDS 183 +Y EDS Sbjct: 170 NYVEDS 175 >gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT] gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta thermophila PT] Length = 245 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +++R I + V K A+GSC ++ GD ++ +V P ++ I Sbjct: 11 IRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRAII 70 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M S R R R RS E+ ++ AL V+ S I I +V+ Sbjct: 71 RYRYNMASFSVEER--RRPGPDR---RSYELSKVSREALEPVILTSYFPKSVIDIFVEVL 125 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTRTA I A VAL D M + V++ + G + G ++D Sbjct: 126 QADAGTRTAGINAASVALADAGIPM-------------RSLVSSCAAGKVDGQIVLDPMK 172 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ D +T +G I +Q ++D F + LAK ++ K+Q+ V+ Sbjct: 173 DEDNFGQADMPIAITPTGEITLLQMD---GILTRDEFRQAMELAKKGCQEIYKIQRRVL 228 >gi|330835837|ref|YP_004410565.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina Ar-4] gi|329567976|gb|AEB96081.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina Ar-4] Length = 283 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 102/232 (43%), Gaps = 31/232 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ N R +S+T +K A+GS LVK GDT +L +EE P + G + Sbjct: 28 RNDGRKFNDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKIEEDEP-YSDTPNQGNLVV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 +LP + G + E+ R++ R+LR VDLSAL G R + Sbjct: 87 NAELLPLAY-----ETFEPGPPDENAIELSRVVDRSLRDSKAVDLSALVIEPGKRVWTVW 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHM-----------EDCSNKFQLSQVLKGHV 161 +D V+ G A A AL+D L + ED + F ++ V Sbjct: 142 VDISVLDYGGNILDACTLSAVAALYDTKLPRIVNDNGTINIVKEDKTTPFP----IRYPV 197 Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 A ++ L + +VD D E+ +D +F GHIV +Q S E +FSQ Sbjct: 198 ATVTIAKLGKFLVVDPDLEEEGIMDAKISFSYIPDGHIVGIQKSGE-GSFSQ 248 >gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp. lyrata] gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp. lyrata] Length = 241 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 25/237 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGW 58 +RL GR+ N+MR+I V A+GS + + G+T ++ ++ + K H Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R ++ + RS E+ +I + + + + + QI I V Sbjct: 69 VLCEYSMAQFSTGDRRRQ-----KFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCGYPIVD 176 +QADGGTR+A I A +AL D M D A+SC G L P++D Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDL---------------AVSCSAGYLNSTPLLD 168 Query: 177 LDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 L+Y EDS D ++ + +Q A+ + + FA+ + IA+ I+ Sbjct: 169 LNYVEDSAGGADVTVGILPKLDKVTLLQMDAKLPMETFETVFALASEGCKAIAERIR 225 >gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM 1728] gi|29336949|sp|Q9HIP2|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1 gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum] Length = 248 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 111/243 (45%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +RL GR N++R I + V A+GS +++G ++ +E P ++ H + Sbjct: 17 LRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIV 76 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 A Y M S R KR R + EI ++I AL S + + +I + +V+ Sbjct: 77 KARYNMAAFSVDER-KRPGPDRR----TMEISKVISEALSSSIMIEQFPRAEIDVYIEVL 131 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A +T A VAL D M D V + G + G+ ++DL Sbjct: 132 QADAGTRIAGLTAATVALADAGVPMRDM-------------VVGCTAGKVDGHMVLDLSK 178 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D +M +G IV +Q + ++D + +++ + + ++Q++ + Sbjct: 179 EEDNYGEADIPIAIMPKTGDIVLMQMDGD---VTEDELYQAMDMIFEATKRISQIQREAL 235 Query: 239 SNE 241 N+ Sbjct: 236 LNK 238 >gi|15233167|ref|NP_191721.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana] gi|186511299|ref|NP_001118878.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana] gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana] gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana] gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana] gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana] gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana] gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana] Length = 241 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 24/187 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGW 58 +RL GR+ N+MR+I V A+GS + + G+T ++ ++ + K H Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R ++ + RS E+ +I + + + + + QI I V Sbjct: 69 VLCEYSMAQFSTGDRRRQ-----KFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCGYPIVD 176 +QADGGTR+A I A +AL D M D A+SC G L P++D Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDL---------------AVSCSAGYLNSTPLLD 168 Query: 177 LDYGEDS 183 L+Y EDS Sbjct: 169 LNYVEDS 175 >gi|218662070|ref|ZP_03518000.1| ribonuclease PH [Rhizobium etli IE4771] Length = 75 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 42/57 (73%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P + G Sbjct: 17 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPAVAAQYRQG 73 >gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola SANAE] gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola SANAE] Length = 254 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 104/239 (43%), Gaps = 24/239 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 RL GR N++R I V K A+GSC ++FG ++ +V P ++N + Sbjct: 13 RLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAIVR 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDVI 119 Y M S R KR R S EI ++ AL SVV L L R + I +++ Sbjct: 73 YRYNMAAFSVEER-KRPGPDRR----SIEISKVSREALESVV-LEELYPRSAVDIFVEIL 126 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A I A VAL D M + V+A S G + G ++DL+ Sbjct: 127 QADAGTRVAGINAASVALADAGIPM-------------RCLVSACSVGKIDGEVVLDLNK 173 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ D + G + Q +++ F L++A D L ++QK + Sbjct: 174 DEDNYGQADLPVAVNQFGEVTLCQMDGH---LTEEEFGKALDMAVDGCKKLHEMQKQAL 229 >gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus mahii DSM 5219] gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus mahii DSM 5219] Length = 297 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 26/241 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +++R + + V A+GSC +++G+ +L ++ P ++ + Sbjct: 14 LRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPNEVLV 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y M S +R+ R G RS EI ++ G A VV I + + Sbjct: 74 RYKYNMASFSVEDRI-------RPGPSRRSTEISKVSGEAFEPVVMTQYYPGAVIDVFAE 126 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+QAD GTRTAAI A +AL D M KG V+A + G + G ++DL Sbjct: 127 VLQADAGTRTAAINAATLALADAGIPM-------------KGLVSACAVGKVDGQLVLDL 173 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + ED+ D MT G I +Q + + L + K +I++Q++ Sbjct: 174 NKPEDNYGQADLPVAMTQDGEITLLQMDGH---LTPEELEEGLEMVKKGCQQIIEIQREA 230 Query: 238 I 238 + Sbjct: 231 L 231 >gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20] gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20] Length = 245 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 22/224 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R GR +QMRE+ ++ V A+GS +V +G+T + E P + + Sbjct: 14 RADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDRAVMR 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST + K A S R+ EI +++ AL + L +I + +++Q Sbjct: 74 VRYHMAPFSTRDERKNPAPSRRE----IEISKVLREALEPAIFLEQFPRSRIDVFVEIVQ 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG TR A++T A +AL D M D V +S G++ G ++DL+ Sbjct: 130 ADGSTRVASLTAASLALADAGVPMRDL-------------VIGVSVGLVNGTVVLDLNGL 176 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 ED+ + D M + G I +Q ++S+D F L LA Sbjct: 177 EDNYGEGDMPVGYMPNLGRITLLQLD---GSWSRDKFAEALKLA 217 >gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1] Length = 240 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 22/239 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR N+MR I + V + A+GS +++G ++ + E P +N + Sbjct: 13 LRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVK 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 A Y M +G V+ G R+ EI +++ AL S + L L +I + V++ Sbjct: 73 ARYNM----SGYSVEERKRPG-PDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLE 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A++T + VA+ D M D V + G G ++DL Sbjct: 128 ADAGTRIASLTASSVAVADAGVPMRDL-------------VVGCTAGKADGKIVLDLSKD 174 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ D ++ +G +V +Q + +++ F ++ D + + +LQ++ + Sbjct: 175 EDNFGQADIPMAILPRTGKVVLLQLDGD---VTEEEFNEATSMMMDAMPRISELQRNAL 230 >gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus mucosus DSM 2162] gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus mucosus DSM 2162] Length = 243 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 6/148 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R+ GR+ +++R + + V K A GS LV++G+T L E +P I + Sbjct: 13 LRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAVL 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST R K A S R+ E+ ++I AL SVV + I + +++ Sbjct: 73 RVRYHMAPFSTSER-KSPAPSRRE----IELSKVIREALESVVFTTQYPRASIDVFIEIL 127 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDC 147 QADGGTRTA +T A +AL D M+D Sbjct: 128 QADGGTRTAGLTAASLALADAGIPMKDL 155 >gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1] gi|259645400|sp|A9A5C9|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1 gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1] Length = 244 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 84/182 (46%), Gaps = 19/182 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R GR ++ R I + K A+GS ++FGD +L V P + +T G + Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S G R K A S R+ EI ++I AL V L + + +V+Q Sbjct: 77 VRYHMEPFSVGER-KNPAPSRRE----IEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AA+T A VAL D M D VAAI+ G + I+D++ Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRDM-------------VAAIAAGKVADTVILDVNNE 178 Query: 181 ED 182 ED Sbjct: 179 ED 180 >gi|213854708|ref|ZP_03382948.1| defective ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 80 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 2/82 (2%) Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166 +G I +DCDV+QADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S Sbjct: 1 MGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSV 58 Query: 167 GMLCGYPIVDLDYGEDSTIDVD 188 G++ G + DL+Y EDS + D Sbjct: 59 GIVNGEAVCDLEYVEDSAAETD 80 >gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167] gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167] Length = 242 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 19/188 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R+ GR + R +++ V A GS LV +G+T +L E +P +I + Sbjct: 15 RVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKAVVR 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST +R K A + R+ EI +++ +AL +VV L I + +V+Q Sbjct: 75 VRYHMAPFSTDDR-KNPAPTRRE----IEISKVVKQALETVVFLEQYPKSTIDVFLEVLQ 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG TR +IT A +AL D M D V +S G + IVDL+ Sbjct: 130 ADGSTRVTSITAASLALADAGIPMRDL-------------VVGVSVGKINDTVIVDLNKL 176 Query: 181 EDSTIDVD 188 ED+ D D Sbjct: 177 EDNYGDGD 184 >gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4] gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4] Length = 245 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RL GR+ +++R + + V K A+GS LV+ G+T ++ E P + + Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R + V R R E+ ++I AL S V + I + +VIQ Sbjct: 76 VRYHMTPFSTDER--KSPVPSR---REIELSKVIREALESSVLVEQFPRSSIDVFMEVIQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A++ A +A+ D + D +AA++ G G ++DL+ Sbjct: 131 ADAGTRLASLMAASLAIIDAGIPVRDA-------------IAAVAVGKADGVVVLDLNEP 177 Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D M S G I +Q + + + F L+LA I + ++K+V+ Sbjct: 178 EDMWGEADMPVAMMPSLGQITLIQLNGH---MTPEEFKQGLDLAYKGINTIYSMEKEVLK 234 Query: 240 NE 241 ++ Sbjct: 235 SK 236 >gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184] gi|254782537|sp|A1RST0|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1 gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum DSM 4184] Length = 246 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 32/230 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R GR +QMRE+++T + A+GS +V +G T + E P + G + Sbjct: 13 VRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST K E S R EI +++ AL V L +I + +++ Sbjct: 73 RVRYHMAPFST----KDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD- 178 QADG TR A++T A +AL D +M D V +S G++ G ++DL+ Sbjct: 129 QADGSTRVASLTAASLALADAGVYMRDL-------------VIGVSVGLVDGAVVLDLNG 175 Query: 179 ----YGE-DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 YGE D + N ++++ G+ +++D F LNLA Sbjct: 176 LEDQYGEGDLPVGYMPNL---KRFTLLQLDGA-----WTRDKFLEALNLA 217 >gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429] gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429] Length = 246 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 102/241 (42%), Gaps = 22/241 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWIT 60 R GR N+ R + + V K AEGS LV +G+T +L +VP + + Sbjct: 15 RSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST K S R+ EI ++I AL VV L I + +V+Q Sbjct: 75 VRYHMAPFSTSEGRKSPTPSRRE----IEISKVIRTALEPVVILERFPRTTIDVYIEVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG TR IT A +AL D M D + +S G + G +VDL+ Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDL-------------LVGVSIGKVSGTIVVDLNQL 177 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D +M G I +Q E ++ L+LA + +L+K+ + Sbjct: 178 EDQYGEGDMPLAIMYGRGLITLMQADGE---WTPTEVNQALDLAFKAAEQIYRLEKETLK 234 Query: 240 N 240 + Sbjct: 235 S 235 >gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi] gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi] Length = 248 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 20/184 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGW 58 +R+ GR+ +++R I + A+GS + G+T +L E K ++N + Sbjct: 13 LRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDR-AI 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I EY M STG R KR+ R RS EI +I + SV+ QI I V Sbjct: 72 INCEYSMATFSTGER-KRQFKKDR---RSTEISVVIRQTFESVILTHLYPRTQIDIFMQV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR A I A +AL D M+D V + + G + G P+ DL+ Sbjct: 128 LQADGGTRCACINAATLALLDAGIPMKD-------------FVVSCAAGFIQGSPLTDLN 174 Query: 179 YGED 182 Y ED Sbjct: 175 YIED 178 >gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8] Length = 247 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 22/222 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RL GR +++R I + V K A+GSC ++ GD ++ E P ++ K + Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVK 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST +R KR R S EI ++ A V+ I + +++Q Sbjct: 73 FRYNMAPFSTDDR-KRPGPDRR----SVEISKVCREAFDPVIMRELYPKTGIEVYVELLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A +AL D M+D V++I+ G + G ++DL+ Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKIGGEMVLDLNAA 174 Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAM 219 ED+ + D M T++ +++ G + F + AM Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGRLTKEEFGRGLKLAM 216 >gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa] gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides] gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa] Length = 241 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 26/188 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TK 55 +RL GR+ +MR++ A+GS + + G+T ++ P ++N Sbjct: 9 LRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVY----GPREVQNRSQQIND 64 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + EY M STG+R +R+ R RS EI +I +A+ + + + QI I Sbjct: 65 QALVRCEYSMANFSTGDR-RRKPKGDR---RSTEISLVIRQAMEECILTNLMPRSQIDIY 120 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 V+QADGGTR+A I A +AL D M D V + S G L P++ Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGFLNSTPLL 167 Query: 176 DLDYGEDS 183 DL+Y EDS Sbjct: 168 DLNYVEDS 175 >gi|291533814|emb|CBL06927.1| RNase PH [Megamonas hypermegale ART12/1] Length = 91 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 1/83 (1%) Query: 161 VAAISCGMLC-GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219 +AAIS G+ PI+DL Y EDST D N VMT GH VE+QG+ E+ F+ + F M Sbjct: 1 MAAISVGISKDNEPILDLCYEEDSTAIADMNIVMTGEGHFVEIQGTGEKQPFTHEQFSKM 60 Query: 220 LNLAKDRIADLIKLQKDVISNEV 242 L A+ I +LI QKD++ N++ Sbjct: 61 LAYAQKGIDELISYQKDILGNDL 83 >gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans DSM 17230] gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans DSM 17230] Length = 242 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 103/239 (43%), Gaps = 22/239 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R GR+ +R I + V K A+GS +V+ G T +L E VP I Sbjct: 14 RHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAVIR 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y ML ST K A S R+ E+ ++I AL + S I I +VI Sbjct: 74 CRYRMLSFSTLGERKSPAPSRRE----IELSKVIREALEPAIISSMYPRTAIDIFVEVIN 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 A+GGTRTA IT A +AL D + D VAA++ G + G ++DLD Sbjct: 130 ANGGTRTAGITAASLALADAGIPLADL-------------VAAVAVGKIDGVIVLDLDEL 176 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D M I +Q + +++ F A L L I + +LQK+ + Sbjct: 177 EDMYGEADMPIAAMPSLNRITMLQLN---GVLTKEEFKAALKLGLQGIKQIYELQKETL 232 >gi|71981632|ref|NP_001021274.1| EXOSome (multiexonuclease complex) component family member (exos-4.1) [Caenorhabditis elegans] gi|6226696|sp|Q17533|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName: Full=Ribosomal RNA-processing protein 41 gi|3873830|emb|CAA97771.3| C. elegans protein B0564.1a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 240 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 100/233 (42%), Gaps = 25/233 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR+ Q+R I+ +++ AEGSC ++ G+T +L + R I Sbjct: 9 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIV 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y S R R R +S EI R++ +A SV+ A Q+ I C+VIQ Sbjct: 69 CQYSATKFSGLERKNRT----RGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG A + +AL D M KG +A +CG++ G PIVDL Sbjct: 125 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGVVDGKPIVDLTSR 171 Query: 181 EDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 E++ + A D +VE+Q DH +++ AK AD+ Sbjct: 172 EETDLLPRVTLATICGRDEVILVELQNR-----LHIDHLSTVMDAAKATCADV 219 >gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5] Length = 247 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 19/193 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RL GR +++R I + V K A+GSC ++ GD ++ E P ++ K + Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVK 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST +R KR R S EI ++ A V+ I + +++Q Sbjct: 73 FRYNMAPFSTDDR-KRPGPDRR----SVEISKVCREAFDPVIMRELYPKMGIEVYVELLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A +AL D M+D V++I+ G + G ++DL+ Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKINGEMVLDLNAA 174 Query: 181 EDSTIDVDANFVM 193 ED+ + D M Sbjct: 175 EDNNGEADMPIAM 187 >gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens] Length = 246 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 83/188 (44%), Gaps = 26/188 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56 +RL GR+ +MR + V A+GS L G+T ++ P + N H Sbjct: 11 LRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVV----YGPHEVHNKAHQLHD 66 Query: 57 -GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + EY M STG R +R R + E+ +IG+ L + + L QI I Sbjct: 67 KALVRCEYSMAAFSTGERRRRGKTDRR----ATELSLVIGQTLEAAIMTHLLPRSQIDIY 122 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 V+QADGGTR A I A +AL D M D V + + G L P++ Sbjct: 123 VQVLQADGGTRAACINAASMALADAGIPMRDL-------------VVSCAAGYLNSTPLL 169 Query: 176 DLDYGEDS 183 DL+Y EDS Sbjct: 170 DLNYQEDS 177 >gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG6J21] Length = 245 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 103/240 (42%), Gaps = 23/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ N+ R++++ V K A+GS ++FG +L V P + N G + Sbjct: 16 IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R K A S R+ EI +++ AL V L I + +V+ Sbjct: 76 RVRYHMAPFSVSER-KNPAPSRRE----IEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR AA+ A VAL D M D V + + G + I+D++ Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCSCAAGKVADALILDVNN 177 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D M + G I +Q + D F + L + + ++QK+ + Sbjct: 178 EEDQAGQADMPIGYMPNFGKITLLQLD---GVLTTDEFKKCIELGIEGCKQVYEIQKNAL 234 >gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus fervidus DSM 2088] gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus fervidus DSM 2088] Length = 236 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 103/247 (41%), Gaps = 29/247 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW--IRNTKHGW 58 +R GR N++R + + V K A+GS ++ G +L A + P I+ Sbjct: 11 VRKDGRAYNELRPVKIKAGVLKRADGSSYIELGSNKILA-AVYGPRDPQITKIKRPDRAI 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 I Y M P S R R G RS EI ++ AL + L I I Sbjct: 70 IRCRYNMAPFSVEER-------KRPGPDRRSIEISKITAEALAPSIILEKFPRSSIDIFI 122 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++ADGGTR A IT A VAL D + D V A S G + G+ ++D Sbjct: 123 EVLEADGGTRCAGITAASVALADAGIPLRDL-------------VVACSAGKVNGHVVLD 169 Query: 177 LDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 L ED + D +M + I +Q E + + ++LA + + KLQK Sbjct: 170 LTEEEDKEGEADVPVAIMPRTKEITLLQVDGE---LTPEELEKAIDLAIEGCMSINKLQK 226 Query: 236 DVISNEV 242 I ++ Sbjct: 227 KSIERKI 233 >gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM 739] gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM 739] Length = 246 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 23/224 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R+I + V K A+GS V++G ++ ++ P ++ + Sbjct: 16 RVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKPDRAILR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL V L I I +V+Q Sbjct: 76 VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M+D VAA + G + G ++DL+ Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDL-------------VAACAAGKIDGEIVLDLNKE 177 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 ED+ + D +M I +Q +++ F + LA Sbjct: 178 EDNYGEADVPVAIMPIKNDITLLQMD---GYLTKEEFLEAVKLA 218 >gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae] gi|206557764|sp|A8WQQ5|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41 gi|309371508|emb|CBG92366.1| CBR-EXOS-4.1 protein [Caenorhabditis briggsae AF16] Length = 240 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 25/233 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR+ Q+R I+ +++ AEGSC ++ G+T +L + R I Sbjct: 9 FRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIV 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y S R R R +S EI R++ +A SV+ + QI I C+VIQ Sbjct: 69 CQYSTTTFSGLERKNRP----RGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG A + +AL D M KG +A +CG++ PIVDL Sbjct: 125 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGIVETKPIVDLTSR 171 Query: 181 EDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 E++ + A D +VE+Q DH +++ AK AD+ Sbjct: 172 EETDLLPRVTLATICGRDEVILVELQNR-----LHIDHLSVVMDAAKATCADV 219 >gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1] Length = 245 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 107/238 (44%), Gaps = 27/238 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RL GR +++R I + V K A+GSC ++ G+ ++ E P ++ K + Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVVK 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST +R KR R S EI ++ A V+ I + +++Q Sbjct: 73 FRYNMAPFSTDDR-KRPGPDRR----SVEISKVCREAFDPVIMRELYPKMGIDVYVELLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A +AL D M+D V++I+ G + G ++DL+ Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKIGGEMVLDLNAA 174 Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED+ + D M T++ +++ G +Q+ F L LA + +LQ+ Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR-----MTQEEFGRGLKLAMGACHQIYELQR 227 >gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1] gi|226740341|sp|B6YSI2|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1 gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1] Length = 249 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 97/224 (43%), Gaps = 23/224 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A+GS V++G +L ++ P ++ + Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K G RS EI ++I AL + L I I +V+Q Sbjct: 77 VRYNMAPFSVEERKK----PG-PDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 ED+ + D +M I +Q ++D F + LA Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMD---GYLTRDEFIEAVRLA 219 >gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis] Length = 243 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 30/244 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56 +RL GR+ +MR++ V A+GS + + G+T ++ P ++N Sbjct: 9 LRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAVY----GPHEVQNKNQQLPD 64 Query: 57 -GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + EY M STG+R +R + R+ EI +I + + + + + QI I Sbjct: 65 QALVRCEYSMANFSTGDRPRR----SKGDRRATEISLVIRQTMEATILTHLMPRTQIDIF 120 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 V+QADGGTR+A I A +AL D M D V + + G L P++ Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMCDL-------------VTSCAAGYLNSTPLL 167 Query: 176 DLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D++Y EDS D A +MT + +Q ++ D F ++ LA + +++ Sbjct: 168 DMNYMEDSAGGPDVAVGLMTKMDKLSLLQMDSK---LPMDIFETVMQLAIEGCKAIVRYI 224 Query: 235 KDVI 238 +DV+ Sbjct: 225 QDVL 228 >gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG8O8] Length = 245 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 19/183 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ N+ R++++ V K A+GS ++FG +L V P + N G + Sbjct: 16 IRCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R K A S R+ EI +++ AL V L I + +V+ Sbjct: 76 RVRYHMEPFSVDER-KNPAPSRRE----IEISKVVKEALEPAVILEKFPRTVIDVFLEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR AA+ A VAL D M D V A + G + I+D++ Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCACAAGKVADTLIIDVNN 177 Query: 180 GED 182 ED Sbjct: 178 EED 180 >gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC 35061] gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061] Length = 234 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 27/242 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57 +R GR+ N++R I + V + A+GS ++ G +L + +IR G Sbjct: 6 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRES--YIRRLLEPNTG 63 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 I Y M P S +R KR RS EI ++ ALR + L + I + Sbjct: 64 VIRCRYNMAPFSVDDR-KRPG----PDRRSSEISKITADALRPALMLENYPRSMVDIYIE 118 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 VI+A+GGTR A IT A VAL D M+D V + G + I+DL Sbjct: 119 VIEAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDEIILDL 165 Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ED D +M +G I +Q + SQ+ F +NLA + + ++QK+ Sbjct: 166 SEVEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKE 222 Query: 237 VI 238 + Sbjct: 223 AL 224 >gi|225454436|ref|XP_002280302.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera] gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera] Length = 241 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 18/184 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59 +RL GR+ +MR+I A+GS + G+T ++ +V + + + Sbjct: 9 LRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQQISDQALV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG+R+++ + RS EI +I + + + + + QI I V+ Sbjct: 69 RCEYTMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR+A I A +AL D M D V + S G L P++DL+Y Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDLNY 171 Query: 180 GEDS 183 EDS Sbjct: 172 VEDS 175 >gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1] gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1] Length = 243 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +RL GR+ +++R + + V K A+GS +V+ G+T +L E P + + Sbjct: 15 LRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVL 74 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST R K A S R+ E+ ++I AL S + + I + +V+ Sbjct: 75 RVRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESQILVEQFPRTSIDVFMEVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A++ A +A+ D + D +AA++ G G ++DL+ Sbjct: 130 QADAGTRLASLMAASLAVVDAGIPVRDL-------------IAAVAVGKADGVVVLDLNE 176 Query: 180 GEDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D M S G I +Q + + + F + LA I + L+K+ + Sbjct: 177 PEDMWGEADMPVAMMPSIGQINLLQLN---GNMTPEEFRQGMELAMKGINIIYNLEKETL 233 Query: 239 SNE 241 N+ Sbjct: 234 KNK 236 >gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7] gi|29336896|sp|Q975G8|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1 gi|15621438|dbj|BAB65433.1| 247aa long hypothetical ribonuclease PH [Sulfolobus tokodaii str. 7] Length = 247 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 29/246 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +RL GR+ ++MR I + V K A+GS + + G+T ++ +E P + + Sbjct: 19 LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVL 78 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDV 118 Y M P ST R K A S R+ E+ ++I AL S + L L R +I + +V Sbjct: 79 RVRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESTI-LVELFPRTVIDVFMEV 132 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QAD GTR ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 133 LQADAGTRLVSLMAASMALADAGIPMRDL-------------IAGVAVGKADGVLVLDLN 179 Query: 179 YGEDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED + D M S ++++ G+ F Q L +A+ I + L+K Sbjct: 180 EPEDMWGEADMPVAMMPSLKQVALLQLNGNMTPQEFRQ-----ALEMAQKGIETIYNLEK 234 Query: 236 DVISNE 241 + I ++ Sbjct: 235 EAIRSK 240 >gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642] gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642] Length = 245 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 24/241 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR +++R I + V K A+GSC ++ G ++ KV P + + + Sbjct: 13 RIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQAIVR 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 Y M P S R R G RS EI ++ AL S++ I I +V Sbjct: 73 YRYNMAPFSVEER-------KRPGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QAD G+RTA + A VAL D M KG + +++ + G ++D Sbjct: 126 LQADAGSRTACLNAASVALVDAGIPM-------------KGIITSVAVAKVDGVLVLDPM 172 Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED+ + D F +G I + +++ + LAK ++ KLQ++ Sbjct: 173 KEEDNYGEADIPFAFFIRNGKIESIALLQMDGRVTKEELMQAVELAKKGAMEIYKLQREA 232 Query: 238 I 238 I Sbjct: 233 I 233 >gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG5E24] Length = 245 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 8/151 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ N+ R++++ V K A+GS ++FG +L V P + N G + Sbjct: 16 IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R K A S R+ EI +++ AL V L I + +V+ Sbjct: 76 RVRYHMEPFSVSER-KNPAPSRRE----IEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMED--CS 148 QADGGTR AA+ A VAL D M D CS Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRDMVCS 161 >gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] Length = 243 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 10/150 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R+ GR NQ+R I + V K A+GS +++G ++ E P ++ + Sbjct: 13 LRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A Y M P S R R G R+ E+ ++I AL SV+ + I + + Sbjct: 73 RARYSMAPFSVDER-------KRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIE 125 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDC 147 V+QAD GTR A IT A +AL D M D Sbjct: 126 VLQADAGTRVAGITVASLALADAGIPMRDL 155 >gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii DSM 2375] gi|222434092|gb|EEE41257.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii DSM 2375] Length = 233 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 27/242 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57 +R GR+ N++R I + V + A+GS ++ G +L + +IR G Sbjct: 5 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRE--SYIRRLLEPNTG 62 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 I Y M P S +R KR RS EI ++ ALR + L + I + Sbjct: 63 VIRCRYNMAPFSVDDR-KRPG----PDRRSSEISKITADALRPALMLENYPRSMVDIYIE 117 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 VI+A+GGTR A IT A VAL D M+D V + G + ++DL Sbjct: 118 VIEAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDKIVLDL 164 Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ED D +M +G I +Q + SQ+ F +NLA + + ++QK+ Sbjct: 165 SEVEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKE 221 Query: 237 VI 238 + Sbjct: 222 AL 223 >gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] Length = 245 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 6/148 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R+ GR NQ+R I + V K A+GS +++G ++ E P ++ + Sbjct: 15 LRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIV 74 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 A Y M P S R KR R+ E+ ++I AL SV+ + I + +V+ Sbjct: 75 RARYSMAPFSVDER-KRPG----PDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDC 147 QAD GTR A IT A +AL D M D Sbjct: 130 QADAGTRVAGITVASLALADAGIPMRDL 157 >gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374] gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374] Length = 234 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 27/242 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57 +R GR+ N++R I + V + A+GS ++ G +L + +IR G Sbjct: 6 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRES--YIRRLLEPNTG 63 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 I Y M P S +R KR RS EI ++ ALR + L + I + Sbjct: 64 VIRCRYNMAPFSVDDR-KRPG----PDRRSSEISKITADALRPALMLENYPRSMVDIYIE 118 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 VI+A+GGTR A IT A VAL D M+D V + G + ++DL Sbjct: 119 VIEAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDKIVLDL 165 Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ED D +M +G I +Q + SQ+ F +NLA + + ++QK+ Sbjct: 166 SEVEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKE 222 Query: 237 VI 238 + Sbjct: 223 AL 224 >gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1] gi|29336795|sp|Q8PTT8|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1 gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1] Length = 493 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 26/241 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATLEEKVPMWIRNTKHGWI 59 +RL GR+ +++R + + V A+GSC +++G +L E P + I Sbjct: 16 LRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVI 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M S +R R G RS EI ++ A V+ I I + Sbjct: 76 RYRYNMASFSVEDR-------ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVE 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+QAD GTRTAAI + +AL D M KG + + + G + G ++DL Sbjct: 129 VLQADAGTRTAAINASSIALADAGIPM-------------KGLITSCAFGKVDGKIVLDL 175 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + ED+ + D MT G I +Q + D L L K +++++Q+ V Sbjct: 176 NKEEDNYGEADFPVAMTQDGEITLIQMD---GNLTPDEIKQGLELVKKGCKEILEIQQAV 232 Query: 238 I 238 + Sbjct: 233 L 233 >gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1] gi|73919276|sp|Q5JIR6|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1 gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus kodakarensis KOD1] Length = 249 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 23/224 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A+GS V++G +L ++ P ++ + Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L I + +++Q Sbjct: 77 VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M+D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMKDL-------------VAACAAGKIDGEIVLDLNKE 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 ED+ + D +M I +Q ++D F + LA Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFLEAVRLA 219 >gi|70606424|ref|YP_255294.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus acidocaldarius DSM 639] gi|68567072|gb|AAY80001.1| exosome complex exonuclease RRP43-like protein [Sulfolobus acidocaldarius DSM 639] Length = 276 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 22/219 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N+ R++ +T +K AEGS LVK G+T +L LEE P + G + Sbjct: 27 VRLDGRKPNEYRQLKVTLGYAKKAEGSALVKLGNTLVLAGVKLEEDSP-YPDTPNQGNLI 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112 +LP + G S E+ R++ R+LR +DLS L G + + Sbjct: 86 VNVELLPLAY-----ETFEPGPPDENSIELARIVDRSLRDSKAIDLSKLVIAPGKKVWTL 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAI 164 +D V+ DG A + + A++D L +E ++ ++++ ++ V + Sbjct: 141 WVDVYVLDYDGNILDACMLASIAAIYDTKLPKVEVEGDEIKINKEERLSIPLVNYPVVTV 200 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203 + + Y +VD + E+S D + T G IV +Q Sbjct: 201 TTAKIGKYVVVDPNLDEESIADAKLSISYTKEGTIVGLQ 239 >gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus V24Sta] gi|254782538|sp|B1Y978|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1 gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Thermoproteus neutrophilus V24Sta] Length = 246 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 18/183 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R GR +QMRE+ ++ V A+GS +V +G T + E P + G + Sbjct: 13 VRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST + K S R+ EI +++ AL V L +I + +++ Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVMLEQYPRSRIDVFIEIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADG TR A++T A +AL D +M D V +S G++ G ++DL+ Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDL-------------VIGVSVGLVDGTVVLDLNG 175 Query: 180 GED 182 ED Sbjct: 176 LED 178 >gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum subterraneum] gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum subterraneum] Length = 246 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 19/189 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R+ GR+ ++MR++ + V + +GS V+ G T + +V P + G I Sbjct: 15 LRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGVIGPREVHPKHLELPDKGVI 74 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M S R K ++ R+ E+ ++I AL +VV L I I +VI Sbjct: 75 NCRYHMASFSVDER-KPLGMTRRE----IELSKVIREALETVVFLEEFPRMMIDIFVEVI 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA IT A +AL D M D +AAI+ G + G ++D++ Sbjct: 130 QADGGTRTAGITAASLALADAGIPMADM-------------IAAIAVGKVDGVLVLDINE 176 Query: 180 GEDSTIDVD 188 ED + D Sbjct: 177 QEDKYGEAD 185 >gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304] gi|29336576|sp|O29757|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1 gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304] Length = 258 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 24/242 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +++R I + V K A+GSC ++ G ++ +V P +++ I Sbjct: 16 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAII 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P S R R G RS EI ++ A +V+ I I + Sbjct: 76 RYRYNMAPFSVEER-------KRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVE 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+QAD G+RTA + A VAL D M KG + +++ G G ++D Sbjct: 129 VLQADAGSRTACLNAASVALVDAGVPM-------------KGMITSVAVGKADGQLVLDP 175 Query: 178 DYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ED+ + D F + +G I + ++D + LAK + ++Q++ Sbjct: 176 MKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQRE 235 Query: 237 VI 238 I Sbjct: 236 AI 237 >gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis] gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis] Length = 241 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 26/188 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TK 55 +RL GR+ +MR++ A+GS + + G+T ++ P ++N Sbjct: 9 LRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVY----GPREVQNRSQQIID 64 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + EY M STG+R+++ + RS EI +I + + + + QI I Sbjct: 65 QALVRCEYTMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 V+QADGGTR+A I A +AL D M D V + S G L P++ Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLL 167 Query: 176 DLDYGEDS 183 DL+Y EDS Sbjct: 168 DLNYVEDS 175 >gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site Length = 258 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 24/242 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +++R I + V K A+GSC ++ G ++ +V P +++ I Sbjct: 16 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAII 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P S R R G RS EI ++ A +V+ I I + Sbjct: 76 RYRYNMAPFSVEER-------KRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVE 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+QAD G+RTA + A VAL D M KG + +++ G G ++D Sbjct: 129 VLQADAGSRTACLNAASVALVDAGVPM-------------KGMITSVAVGKADGQLVLDP 175 Query: 178 DYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ED+ + D F + +G I + ++D + LAK + ++Q++ Sbjct: 176 MKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQRE 235 Query: 237 VI 238 I Sbjct: 236 AI 237 >gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [uncultured methanogenic archaeon RC-I] gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [uncultured methanogenic archaeon RC-I] Length = 253 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 99/239 (41%), Gaps = 24/239 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 RL GR +R I V K A+GSC ++FG ++ +V P ++ + + Sbjct: 13 RLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASNAIVR 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDVI 119 Y M S R KR R S EI ++ AL SV+ L L R I I +++ Sbjct: 73 YRYNMASFSVEER-KRPGPDRR----SIEISKVSREALESVI-LKELYPRSAIDIFVEIL 126 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A I A VAL D M K V+A + G ++DL+ Sbjct: 127 QADAGTRVAGINAASVALADAGIPM-------------KCLVSACAVGKADDTLVLDLNK 173 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ D M G I Q + D F LN+A + L +LQK + Sbjct: 174 DEDNYGQADLPIAMNQFGEITLCQMDGH---MTSDEFSTALNMAIEGCKKLHELQKQAL 229 >gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei] gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei] Length = 372 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 17/183 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR+ Q+R I+ +++ AEGSC ++ G+T +L + R I Sbjct: 125 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIV 184 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y S R R R +S EI R++ +A SV+ + QI I C+VIQ Sbjct: 185 CQYSTTTFSGLERKNRP----RGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQ 240 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG A + +AL D M KG +A +CG++ PIVDL Sbjct: 241 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGIVDAKPIVDLTSR 287 Query: 181 EDS 183 E++ Sbjct: 288 EET 290 >gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5] gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens Hrk 5] Length = 245 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 23/225 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R+ GR ++MR + + V K A+GS V+ G+ +L E +P + Sbjct: 16 RVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEALPDRAILK 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y MLP S R S + R E+ ++I AL V L+ I + +++ Sbjct: 76 CRYSMLPFSVAERK-----SPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHILE 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I VAL D M D VAAI+ G + ++D++ Sbjct: 131 ADGGTRTASIIAGSVALADAGIAMRDL-------------VAAIAVGKIGNVLVLDINGI 177 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 ED D D +M G I +Q F+ L LA+ Sbjct: 178 EDQYGDGDMPIAMMPQRGEITLLQAD---GVFTPQEIEEALRLAQ 219 >gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638] gi|29336822|sp|Q8U0L9|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1 gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638] Length = 250 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 23/224 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 RL GR++ ++R I + V K A GS +++G ++ ++ P ++ + Sbjct: 17 RLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K G RS EI ++I AL + L I + +V+Q Sbjct: 77 VRYNMAPFSVEERKK----PG-PDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA S G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACSAGKIEGEIVLDLNKE 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 ED+ + D +M I +Q +++ F + LA Sbjct: 179 EDNYGEADVPVAIMPIKNDITLLQMD---GYLTKEEFIEAVKLA 219 >gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5] Length = 247 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 27/238 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R GR +++R I + V K A+GSC ++ G+ ++ E P ++ K I Sbjct: 13 RSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVIK 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST +R KR R S EI ++ A V+ I + +++Q Sbjct: 73 FRYNMAPFSTDDR-KRPGPDRR----SVEISKVCREAFDPVIMRELYPKMGIEVYVELLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A +AL D M+D V++I+ G + G ++DL+ Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKINGEVVLDLNAA 174 Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED+ + D M T++ +++ G +Q+ F L LA + +LQ+ Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR-----MTQEEFGRGLKLAMGACHQIYELQR 227 >gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG8G2] Length = 245 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 8/151 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ N+ R++++ V K A+GS ++FG +L V P + N G + Sbjct: 16 IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R K A S R+ EI +++ AL V L I + +V+ Sbjct: 76 RVRYHMEPFSVSER-KNPAPSRRE----IEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMED--CS 148 QADGG+R AA+ A VAL D M D CS Sbjct: 131 QADGGSRCAALDAASVALADAGIPMRDMVCS 161 >gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP] gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP] Length = 246 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 23/224 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A+GS +++G +L ++ P ++ + Sbjct: 16 RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDRAILR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K G RS EI ++I AL + L I + +V+Q Sbjct: 76 VRYNMAPFSVEERKK----PG-PDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M+D V+A + G + G ++DL+ Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDL-------------VSACAAGKIEGQIVLDLNKE 177 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 ED+ + D +M I +Q +++ F + LA Sbjct: 178 EDNYGEADVPVAIMPIKNDITLLQMD---GYLTREEFLEAVRLA 218 >gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro] gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri str. Fusaro] Length = 501 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 26/241 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATLEEKVPMWIRNTKHGWI 59 +RL GR +++R + + V A+GSC +++G +L E P + I Sbjct: 14 LRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTAVI 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y M ST +R R G RS EI ++ A V+ I I + Sbjct: 74 RYKYNMASFSTEDR-------ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVE 126 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ++QAD GTRTAAI + +AL D M KG V + + G + G ++DL Sbjct: 127 ILQADAGTRTAAINASSIALADAGIPM-------------KGLVTSCAFGKVDGQIVLDL 173 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + ED+ + D MT G I +Q + D L K +++++Q+ V Sbjct: 174 NKEEDNYGEADFPVAMTQDGEITLLQMD---GNLTTDEIRKGFELVKKGCKEILEIQQAV 230 Query: 238 I 238 + Sbjct: 231 L 231 >gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine microorganism HF4000_APKG2H5] Length = 238 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 27/219 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R+ GR+ +R IS+ V A GS V++G H++ E P I + Sbjct: 16 RMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLD 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 Y M P ST +R+ R G RS+EI ++ AL SVV L +I ++ ++ Sbjct: 76 VRYNMAPFSTTDRI-------RPGFNRRSREISKVTSDALESVVLLEMYPRSKIRVEIEI 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + A+ GTR +T A VAL M D V +++ G + G I DL+ Sbjct: 129 LCAEAGTRCVGLTAASVALAHAGIPMTDM-------------VVSVASGKINGVVICDLN 175 Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHF 216 ED+ + D ++ +SG +V +Q + S D F Sbjct: 176 KEEDNYGEADLPMGMLPNSGDLVFLQMDGD---LSPDEF 211 >gi|15920654|ref|NP_376323.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus tokodaii str. 7] gi|29336897|sp|Q975G9|ECX2_SULTO RecName: Full=Probable exosome complex exonuclease 2 gi|15621437|dbj|BAB65432.1| 275aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 275 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 22/221 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ + R IS+T +K AEGS LVK GDT +L LEE+ P + G + Sbjct: 27 IRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEP-FPDTPNQGNLV 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112 +LP + G + E+ R++ R+LR VDLS L G + Sbjct: 86 VNVELLPLAY-----ETFEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPGKKVWTA 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQVLKGHVAAISCGMLC- 170 +D V+ G A A AL++ L +E + ++ + K V I+ ++ Sbjct: 141 WVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDNVKIIKEEKTDVTPIAYPVVTV 200 Query: 171 ------GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205 Y +VD E+S DV +F G IV +Q S Sbjct: 201 TVAKIGKYLVVDPSLDEESIADVKISFSYVQDGRIVGMQKS 241 >gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5] gi|29337010|sp|Q9V119|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1 gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Adp In Double Conformation gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With A Single Stranded 10-Mer Poly(A) Rna gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Cdp gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi GE5] Length = 249 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 23/224 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A GS +++G ++ ++ P ++ + Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L I + +V+Q Sbjct: 77 VRYNMAPFSVEERKK-----PGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 ED+ + D +M I +Q ++D F + LA Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLA 219 >gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum] Length = 249 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 97/230 (42%), Gaps = 29/230 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 RL GR+ +Q+R I+ V A+GS ++ G+T +L A P T+ T Sbjct: 9 FRLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLC-AVYGPHEPRQRNRTQEDRCT 67 Query: 61 --AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +Y M ST R +R R RS E R++ +A + + + QI I C++ Sbjct: 68 VNCQYSMATFSTNERKERP----RGDRRSMEFARLMEKAFETAILVENYPHAQIDIFCEL 123 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG-MLCGYPIVDL 177 +QADG A + A +AL D ++G VAA SC L G P D+ Sbjct: 124 LQADGSHLAACVNAATLALAD-------------AGVPMRGLVAAASCACALDGTPCADV 170 Query: 178 DYGEDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 E+S + AN D + E+Q R DH ML A+ Sbjct: 171 SAREESNVMPRITIANISGMDEIILTELQNRLHR-----DHLIPMLQCAR 215 >gi|146302863|ref|YP_001190179.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera sedula DSM 5348] gi|145701113|gb|ABP94255.1| ribosomal RNA-processing protein RRP42 [Metallosphaera sedula DSM 5348] Length = 280 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 33/233 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ R +S+T +K A+GS LVK GDT +L +EE P + G + Sbjct: 28 RSDGRKFTDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKVEEDEP-YPDTPNQGNLVV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 +LP + G + E+ R++ R+LR VDLS L G + + Sbjct: 87 NAELLPLAY-----ETFEPGPPDENAIELSRVVDRSLRDSKAVDLSGLVIEPGKKVWTVW 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-------------LQHMEDCSNKFQLSQVLKGH 160 +D V+ G A A AL+D +Q E + +K Sbjct: 142 VDISVLDYGGNVLDACTIAAVAALYDAKLPKVVRENDNIIIQKEEKVT-----PLPIKYP 196 Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 V +S + + +VD D E+ +D +F SG+IV +Q S E +FSQ Sbjct: 197 VVTVSVAKIGKFLVVDPDLEEEGIMDAKISFSYIPSGNIVGIQKSGE-GSFSQ 248 >gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6] gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6] Length = 246 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 20/239 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 RL GR +++R I + V + A+GSC ++ G ++ +V P +++ I Sbjct: 14 RLDGRDFDELRPIKIEAGVLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSRAIIR 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K G RS EI ++ AL V+ I I +V+Q Sbjct: 74 YRYNMAPFSVEERKK----PG-PDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTRTA + A VAL D ++G + A++ + G ++D Sbjct: 129 ADAGTRTACLNAASVALIDA-------------GVAMRGMITAVAVAKVEGEIVLDPMKE 175 Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D F + +G I + S + L LAK + +Q++ I Sbjct: 176 EDNYGEADVPFAFLIRNGKIESIALLQMDGKMSAEEMKKALELAKKGAMQIYNIQREAI 234 >gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM 3091] gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera stadtmanae DSM 3091] Length = 232 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 31/244 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56 +R GR N +R + + V A+GS ++ G+ +L P I + KH Sbjct: 6 IRKDGRAYNTLRNMKMEVGVLNNADGSAYIECGNNKILVGVY----GPREIHSKKHSKPD 61 Query: 57 -GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + +Y M P S R KR + R S EI ++I A+ + L I I Sbjct: 62 GAVLRCKYNMAPFSVKER-KRPGPNRR----STEISKLISEAITPNIFLEKYPRASIDIS 116 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V++A+GGTR I GA +AL D M+D ++A + G + + ++ Sbjct: 117 IEVLEAEGGTRCLGIVGASLALADAEIPMKDL-------------ISACAVGKVDDHIVL 163 Query: 176 DLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 DL ED T D ++ +G I +Q +Q+ F L+LA D + +LQ Sbjct: 164 DLSEQEDQTGQADMPLAIIPRTGEITFLQMD---GNLTQEEFEEALDLAYDGCYYINQLQ 220 Query: 235 KDVI 238 K+ + Sbjct: 221 KEAL 224 >gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2] gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2] Length = 249 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 19/188 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A+GS +++G ++ +++ P ++ + Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K G RS EI ++I AL + L I + +V+Q Sbjct: 77 VRYNMAPFSVEERKK----PG-PDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178 Query: 181 EDSTIDVD 188 ED+ + D Sbjct: 179 EDNYGEAD 186 >gi|270697519|ref|ZP_06222988.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212] gi|270315955|gb|EFA28017.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212] Length = 93 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 45/68 (66%) Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216 +KG V+AIS G++ G + DL+Y EDS + D N VM + G ++EVQG+AE FS + Sbjct: 10 IKGLVSAISVGIVDGQAVCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEEL 69 Query: 217 FAMLNLAK 224 +L+LAK Sbjct: 70 LTLLDLAK 77 >gi|254172979|ref|ZP_04879653.1| exosome complex exonuclease 1 [Thermococcus sp. AM4] gi|214033135|gb|EEB73963.1| exosome complex exonuclease 1 [Thermococcus sp. AM4] Length = 248 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 19/188 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R+I + V K A+GS +++G +L ++ P ++ + Sbjct: 16 RIDGRKKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L + + +V+Q Sbjct: 76 VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 131 ADAGTRVAGITAASLALADAGVPMRDL-------------VAACAAGKIDGEIVLDLNKD 177 Query: 181 EDSTIDVD 188 ED+ + D Sbjct: 178 EDNYGEAD 185 >gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303] gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303] Length = 333 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 22/239 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R+ GR+ +++R + + V A+GSC +++G+ +++ ++ P ++ I Sbjct: 14 LRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAVYGPRELHPRRMQRPDAAVI 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M S +R +R S R S EI ++ A VV + I + +V+ Sbjct: 74 RYKYNMASFSVEDR-QRPGPSRR----SSEISKVSSEAFEPVVMTQFYPNTVIDVFSEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +AD GTRTAAI A +AL D LK V+A + G + G ++DL+ Sbjct: 129 EADAGTRTAAINAATLALIDA-------------GIPLKSLVSACAVGKVDGQLVLDLNK 175 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D +T G I +Q ++D + L K+ + ++Q++ + Sbjct: 176 KEDNEGEADLPVAITQDGEITLLQMDGH---LTEDEIKQAMELVKNGCQQIQQIQREAL 231 >gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1] gi|29337017|sp|Q9YC03|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1 gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1] Length = 246 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 25/240 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59 R GR +R + + + A+GS LV+FG T +L A + P + + Sbjct: 17 RHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLA-AVYGPREPHQRFYVLPDRAAL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST R K A S R+ E+ +++ AL VV I + +V+ Sbjct: 76 RVRYHMAPFSTDER-KSPAPSRRE----IELSKVVREALEPVVLAEEFPRTVIDVFLEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTAA+T A +AL D M + V ++ G + G +VD+D Sbjct: 131 QADGGTRTAAVTAASLALADAGIPM-------------RALVGGVAVGKIQGVLVVDVDE 177 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D D G I +Q + + + F L +A I +++++K+ I Sbjct: 178 LEDMYGEADMPVAAAPDIGEITLLQLN---GVLTGEEFRTALAMALRAIDRVVEMEKEAI 234 >gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM 13514] gi|254782535|sp|A4WM67|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1 gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum arsenaticum DSM 13514] Length = 246 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 5/147 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R GR +QMRE+ ++ V A+GS +V +G T + E P + G + Sbjct: 13 VRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST + K S R+ EI +++ AL V L +I + ++I Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVLLEQYPRSRIDVFIEII 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMED 146 QADG TR A++T A +AL D +M D Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRD 155 >gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3] gi|259645401|sp|C5A2B9|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1 gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like protein (Rrp41p) [Thermococcus gammatolerans EJ3] Length = 249 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 19/188 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R+I + V K A+GS +++G +L ++ P ++ + Sbjct: 17 RIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L + + +V+Q Sbjct: 77 VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGVPMRDL-------------VAACAAGKIDGEIVLDLNKD 178 Query: 181 EDSTIDVD 188 ED+ + D Sbjct: 179 EDNYGEAD 186 >gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus] gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus] Length = 245 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 27/227 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N++R I V +GS V+ G+T +L + P N + + Sbjct: 9 LRLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAKKSNHEECVVN 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y M STG R KR R +SQE+ + +AL + + QI + +V+ Sbjct: 69 CQYSMATFSTGERKKRP----RGDRKSQEMTIHLQQALSAAIKTDLYPKSQIDVYIEVLM 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGG A++ A +AL D LK +V A + + P++D+ Sbjct: 125 ADGGNYCASVNAATLALIDA-------------GICLKEYVCACTASLAGKVPLMDVSNL 171 Query: 181 ED----STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 E+ T+ V + + +SG I ++ S F DH +L A Sbjct: 172 EEMSGGPTLTVAS---LPNSGKIAFMEMSQR---FHLDHLPNVLETA 212 >gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi] Length = 246 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 28/228 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N++R I V +GS V+ G+T +L + N + + Sbjct: 9 LRLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSKKSNHEEAIVN 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y M STG R KR R +SQE+ + +AL + + + QI + +V+Q Sbjct: 69 CQYSMATFSTGERKKRP----RGDRKSQEMTIHLKQALSAAIKMELYPRSQIDVYIEVLQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179 ADGG A++ A +AL D LK +V A + + G P++D+ + Sbjct: 125 ADGGNYCASVNAATLALIDA-------------GICLKEYVCACTASLANGNVPLMDVSH 171 Query: 180 GEDS----TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 E++ T+ V + + SG I ++ S F DH +L A Sbjct: 172 LEENSGGPTLTVAS---LPSSGKIAFMEMSQR---FHLDHLPKVLETA 213 >gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2] gi|29336868|sp|Q8ZVM9|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1 gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2] Length = 246 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 5/147 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R GR +QMRE+ + V A+GS +V +G T + E P + G + Sbjct: 13 VRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST + K S R+ EI +++ AL + L +I + +++ Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRRE----IEISKILREALEPAIVLEQYPRSRIDVFVEIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMED 146 QADG TR A++T A +AL D +M D Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRD 155 >gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19] gi|29336819|sp|Q8TYC1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1 gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19] Length = 239 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 93/226 (41%), Gaps = 23/226 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ ++MR + + V K A+GS ++ G ++ ++ P + + Sbjct: 14 LRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVV 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R KR R S EI ++ AL + I I +V+ Sbjct: 74 RFRYNMAPFSVDER-KRPGPDRR----SIEISKLSKEALEPAIFTEYYPRTAIDIFVEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A I+ A VAL D M D VAA + G + G ++D Y Sbjct: 129 QADAGTRCAGISAASVALADAGIEMRDL-------------VAACAAGKVEGKVVLDPMY 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 ED + D +M G I +Q + + F + LAK Sbjct: 176 YEDGYGEADVPLAMMPKEGKITLLQMDGD---MTPGEFKQAVKLAK 218 >gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM 639] gi|76364178|sp|Q4JB27|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1 gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639] Length = 243 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R GR+ +++R I + V K A+GS + + G+T ++ +E P + + Sbjct: 15 LRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASL 74 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST R K A S R+ E+ ++I AL S + L+ I I +V+ Sbjct: 75 RVRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESTILLNLFPRTVIDIFMEVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A+ A +AL D M D +A ++ G G ++DL+ Sbjct: 130 QADAGTRLVALMAASMALADAGIPMRDL-------------IAGVAVGKADGSLVLDLNE 176 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D V+ G +V +Q + + D F LA+ I+ + LQK+ + Sbjct: 177 QEDMWGEADMPIAVLPSLGQVVLLQLN---GFMTPDEFRRAFELAQKGISSIYALQKEAL 233 Query: 239 SNE 241 N+ Sbjct: 234 KNK 236 >gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631] gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631] Length = 244 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 24/241 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 RL GR ++R I + V A+GSC ++ G ++ +V P + + I Sbjct: 12 RLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSKAIIR 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 Y M P S R R G RS EI ++ AL V+ I I +V Sbjct: 72 YRYSMAPFSVEER-------KRPGPDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEV 124 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QAD G+RTA + A VAL D M KG V +++ + G ++D Sbjct: 125 LQADAGSRTACLNAASVALIDAGIPM-------------KGMVTSVAVAKVDGILVLDPM 171 Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED+ + D F + +G I + S++ L +AK + +LQ++ Sbjct: 172 KEEDNYGEADIPFAFLIRNGKIESITLLQMDGRVSKEELKKALEMAKKGAMQIYQLQREA 231 Query: 238 I 238 I Sbjct: 232 I 232 >gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum OPF8] gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum OPF8] Length = 248 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 29/243 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR ++MR I + V + A+GS V++G +L +V P + I Sbjct: 18 IRTDGRLPHEMRPIKMMVGVLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALI 77 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGG---RSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 A Y M P ST R R+ G RS E+ ++I AL+ + I I Sbjct: 78 RARYNMAPFSTPER--------RRPGPDRRSIELSKVIREALKPAIFAENYPGSVIDIFV 129 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+++D GTR A I A ++G V+A S G + + +VD Sbjct: 130 EVLRSDAGTRVAGINAA-------------SLALASAGVAMRGLVSACSVGRVGSFIVVD 176 Query: 177 LDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ++ ED D D +M +S I +Q T S++ F L+L + I + ++QK Sbjct: 177 PNHDEDMWGDSDMPLAMMMESEEITLLQAD---GTLSEEEFKEALDLGRRAIRFVYEVQK 233 Query: 236 DVI 238 + + Sbjct: 234 EAL 236 >gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2] gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2] Length = 245 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 27/244 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R GR+ +++R I + V K A+GS + + G+T + +E P + + Sbjct: 16 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R K A S R+ E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G I+DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 177 Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED + D M S + + ++ GS + D F +LA I + L+++ Sbjct: 178 EDMWGEADMPIAMMPSLNQVTLFQLNGS-----MTPDEFRQAFDLAVKGINIIYNLEREA 232 Query: 238 ISNE 241 + ++ Sbjct: 233 LKSK 236 >gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2] gi|29337007|sp|Q9UXC2|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1 gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2] gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2] Length = 248 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 27/244 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R GR+ +++R I + V K A+GS + + G+T + +E P + + Sbjct: 19 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 78 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R K A S R+ E+ ++I AL S V + I + +++Q Sbjct: 79 VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G I+DL+ Sbjct: 134 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 180 Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED + D M S + + ++ GS + D F +LA I + L+++ Sbjct: 181 EDMWGEADMPIAMMPSLNQVTLFQLNGS-----MTPDEFRQAFDLAVKGINIIYNLEREA 235 Query: 238 ISNE 241 + ++ Sbjct: 236 LKSK 239 >gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis] gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis] Length = 247 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 26/189 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR+ +++R++ V A+GS ++ G+T L T P ++N Sbjct: 12 LRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVY----GPHEVQNKAKALHD 67 Query: 59 ---ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + ++GM STG R K+ R ++ E+ M+ R + + ++ QI I Sbjct: 68 RVLLNVQFGMATFSTGERKKKP----RGDRKATELSMMVRRTFEAAILINLYPRSQIDIY 123 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 V+QADGG A I +AL LK +V+A + + P++ Sbjct: 124 VQVLQADGGNHVACINAVTLAL-------------INAGIPLKDYVSACTVSFVNDTPLM 170 Query: 176 DLDYGEDST 184 D++Y E+ST Sbjct: 171 DINYLEEST 179 >gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM 11548] gi|254782536|sp|A3MUP1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1 gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum calidifontis JCM 11548] Length = 246 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 5/147 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R GR +QMRE+ + A+GS +V +G T + E P + G + Sbjct: 13 LRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST + K S R+ EI +++ AL V L +I + +++ Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVMLEQYPRSRIDVFIEIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMED 146 QADG TR A++T A +AL D +M D Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRD 155 >gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27] gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27] Length = 245 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 19/196 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R+ GR+ +++R I + V K A+GS + + G+T + +E P + + Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R K A S R+ E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEA 177 Query: 181 EDSTIDVDANFVMTDS 196 ED + D M S Sbjct: 178 EDMWGEADMPVAMMPS 193 >gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A] Length = 245 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 22/216 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R+ GR+ +++R I + V K A+GS + + G+T + +E P + + Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R K A S R+ E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177 Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQ 213 ED + D M S + + ++ G+ F Q Sbjct: 178 EDMWGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQ 213 >gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15] gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14] gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51] gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5] gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15] gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14] gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51] gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5] Length = 245 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 22/216 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R+ GR+ +++R I + V K A+GS + + G+T + +E P + + Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R K A S R+ E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177 Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQ 213 ED + D M S + + ++ G+ F Q Sbjct: 178 EDMWGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQ 213 >gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25] gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4] gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25] gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4] Length = 245 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 22/216 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R+ GR+ +++R I + V K A+GS + + G+T + +E P + + Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R K A S R+ E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177 Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQ 213 ED + D M S + + ++ G+ F Q Sbjct: 178 EDMWGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQ 213 >gi|227827678|ref|YP_002829458.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus M.14.25] gi|229584882|ref|YP_002843384.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus M.16.27] gi|259645402|sp|C3N5R4|ECX2_SULIA RecName: Full=Probable exosome complex exonuclease 2 gi|259645405|sp|C3MVG5|ECX2_SULIM RecName: Full=Probable exosome complex exonuclease 2 gi|227459474|gb|ACP38160.1| 3' exoribonuclease [Sulfolobus islandicus M.14.25] gi|228019932|gb|ACP55339.1| 3' exoribonuclease [Sulfolobus islandicus M.16.27] Length = 275 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 97/232 (41%), Gaps = 28/232 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------- 114 +LP + G + E+ R++ R+LR D AL +++I Sbjct: 87 NVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSVW 138 Query: 115 ----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVA 162 D V+ G A + ALH+ + +E SN F++++ L V Sbjct: 139 TVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVV 198 Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 +S + Y IVD D E+S +D +F T IV +Q S + + QD Sbjct: 199 TVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQD 250 >gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4] Length = 245 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 19/196 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R+ GR+ ++R I + V K A+GS + + G+T + +E P + + Sbjct: 16 RIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R K A S R+ E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177 Query: 181 EDSTIDVDANFVMTDS 196 ED + D M S Sbjct: 178 EDMWGEADMPVAMMPS 193 >gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii] gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii] Length = 264 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 26/188 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-----PMWIRNTK 55 +RL GR+ +MR++ V + A GS + + G+T ++ +V +W R Sbjct: 9 LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDR--- 65 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + EY M STG+R ++ + R S EI +I + L + + + + QI I Sbjct: 66 -ALVRCEYSMAAFSTGDRRRKGKGNRR----STEISLVIRQTLEAAILTNLMPKSQIDIY 120 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 V+QADGGTR+A I A +AL + M D VA+ + G L G P++ Sbjct: 121 VQVLQADGGTRSACINAAALALAEAGIPMRDL-------------VASCAAGYLNGTPLL 167 Query: 176 DLDYGEDS 183 DL+Y EDS Sbjct: 168 DLNYVEDS 175 >gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii] gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii] Length = 242 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 26/188 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-----PMWIRNTK 55 +RL GR+ +MR++ V + A GS + + G+T ++ +V +W R Sbjct: 9 LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDR--- 65 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + EY M STG+R ++ + R S EI +I + L + + + + QI I Sbjct: 66 -ALVRCEYSMAAFSTGDRRRKGKGNRR----STEISLVIRQTLEAAILTNLMPKSQIDIY 120 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 V+QADGGTR+A I A +AL + M D VA+ + G L G P++ Sbjct: 121 VQVLQADGGTRSACINAAALALAEAGIPMRDL-------------VASCAAGYLNGTPLL 167 Query: 176 DLDYGEDS 183 DL+Y EDS Sbjct: 168 DLNYVEDS 175 >gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3] gi|29336584|sp|O59223|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1 gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 249 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 19/188 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A GS +++G ++ ++ ++ + Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K G RS EI ++I AL + L I + +V+Q Sbjct: 77 VRYNMAPFSVEERKK----PG-PDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178 Query: 181 EDSTIDVD 188 ED+ + D Sbjct: 179 EDNYGEAD 186 >gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21] gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21] Length = 243 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 105/245 (42%), Gaps = 31/245 (12%) Query: 4 SGRQEN----QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKH 56 SGR +N ++R++ + V + A+GS ++ G +L A + +++R Sbjct: 17 SGRADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVL--AAVYGPRELFVRRLMQPNK 74 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 + +Y M P S +R KR R S EI ++ +AL V L I + Sbjct: 75 AVLRCKYNMAPFSVDDR-KRPGPDRR----SVEISKLASQALTPAVFLEKFPRSTIDVFI 129 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +VI+A+GGTR A IT A VAL D M D V A + G G I+D Sbjct: 130 EVIEAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKSDGKVILD 176 Query: 177 LDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 L ED D +M +G I +Q +++ F L+LA + + + QK Sbjct: 177 LSEVEDKEGQADVPIAIMPRTGEITLLQMD---GNLTEEEFEQALDLAINGCKIISEKQK 233 Query: 236 DVISN 240 I N Sbjct: 234 AAIKN 238 >gi|229582055|ref|YP_002840454.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus Y.N.15.51] gi|259645406|sp|C3NHC2|ECX2_SULIN RecName: Full=Probable exosome complex exonuclease 2 gi|228012771|gb|ACP48532.1| 3' exoribonuclease [Sulfolobus islandicus Y.N.15.51] Length = 275 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 28/232 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 28 RQDGRKLTDYRPLSITLNYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------- 114 +LP + G + E+ R++ R+LR D AL +++I Sbjct: 87 NVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSVW 138 Query: 115 ----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVA 162 D V+ G A + AL++ + +E SN F++++ L V Sbjct: 139 TVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVV 198 Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 +S + Y IVD D E+S +D +F T IV +Q S + + QD Sbjct: 199 TVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQD 250 >gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1] gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1] Length = 276 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 22/219 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R +S+T +K A+GS LVK GDT +L +E + P + G + Sbjct: 27 IRADGRKFNEYRPLSITLSYAKKADGSALVKLGDTTVLAGVKVEPEEP-FEDTPNQGNLV 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112 +LP + G + E+ R++ R+LR +DLS L G + + Sbjct: 86 VNVELLPLAY-----ETFEPGPPDENAIELSRVVDRSLRDSKSIDLSKLVIEPGKKIWTV 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQVLKGH-------VAAI 164 +D V+ G A A AL+D L + ++ ++ + KG V + Sbjct: 141 WVDIYVLDYGGNILDACTLAAVSALYDTRLPKVVKEGDEIKIIKEEKGEKLPMNFPVVTV 200 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203 S + + +VD D E+ +D + T G IV +Q Sbjct: 201 SVAKIGKHLVVDPDLDEEGIMDAKISLSYTPEGRIVGIQ 239 >gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti] gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti] gi|108870517|gb|EAT34742.1| exosome complex exonuclease RRP41, putative [Aedes aegypti] gi|108870766|gb|EAT34991.1| exosome complex exonuclease RRP41, putative [Aedes aegypti] Length = 245 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 27/227 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N++R I V +GS ++ G+T +L + P + + + Sbjct: 9 LRLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAKKSSHEEVIVN 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y M STG R +R R +SQE+ + +AL + + QI + +V+ Sbjct: 69 CQYSMATFSTGERKRRP----RGDRKSQEMTIHLQQALSAAIKTELYPKSQIDVYIEVLM 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGG A++ A +AL D LK +V A + + P++D+ Sbjct: 125 ADGGNYCASVNAATLALIDA-------------GICLKEYVCACTASLAGKIPLMDVSNL 171 Query: 181 ED----STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 E+ T+ V + + SG I ++ S F DH +L A Sbjct: 172 EEMSGGPTLTVAS---LPSSGKIAFMEMSQR---FHLDHLPKVLETA 212 >gi|237739457|ref|ZP_04569938.1| nucleoside-triphosphatase [Fusobacterium sp. 2_1_31] gi|229423065|gb|EEO38112.1| nucleoside-triphosphatase [Fusobacterium sp. 2_1_31] Length = 262 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 40/67 (59%) Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 VDL Y EDS +VD N +M G +EVQG+ E +TF++ +L+LA+ I +I LQ Sbjct: 1 VDLKYSEDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRTELNGLLDLAEASIKRIINLQ 60 Query: 235 KDVISNE 241 VI E Sbjct: 61 DKVIEQE 67 >gi|323474736|gb|ADX85342.1| 3' exoribonuclease [Sulfolobus islandicus REY15A] gi|323477464|gb|ADX82702.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4] Length = 275 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 28/232 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------- 114 +LP + G + E+ R++ R+LR D AL +++I Sbjct: 87 NVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSVW 138 Query: 115 ----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVA 162 D V+ G A + AL++ + +E SN F++++ L V Sbjct: 139 TVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVV 198 Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 +S + Y IVD D E+S +D +F T IV +Q S + + QD Sbjct: 199 TVSIAKIDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQD 250 >gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions Length = 250 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 27/244 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R GR+ +++R I + V K A+GS + + G+T + +E P + + Sbjct: 21 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 80 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R K A S R+ E+ ++I AL S V + I + +++Q Sbjct: 81 VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 135 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G I+DL+ Sbjct: 136 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 182 Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 E + D M S + + ++ GS + D F +LA I + L+++ Sbjct: 183 EAMWGEADMPIAMMPSLNQVTLFQLNGS-----MTPDEFRQAFDLAVKGINIIYNLEREA 237 Query: 238 ISNE 241 + ++ Sbjct: 238 LKSK 241 >gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum] gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum] Length = 247 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 28/252 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +R+ GR+ N++R I++ VS A+GS + G+T ++ ++ + ++ + Sbjct: 12 LRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSIFDRAIV 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E+ ST R ++ G + + EI ++ +A S + QI I V+ Sbjct: 72 KCEFATSSFSTTERKPQQKTKGDRA--TTEISNLVKQAFESTIQTHLYPRSQINIYIQVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q+DGG + AAI + +AL D M+D V A+S + G ++DL++ Sbjct: 130 QSDGGLKAAAINASTLALIDAGISMKD-------------FVCAVSTSCIDGVAVLDLNH 176 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK---DRIADLI---- 231 E+ + D + G ++ + ++ QD F ++L L + +I ++ Sbjct: 177 IEERSGGPDCLLSIQPQIGGVISLNMDSK---VPQDLFESVLELGEKGCKKIFSILSDQV 233 Query: 232 -KLQKDVISNEV 242 K D+ISN++ Sbjct: 234 KKYSTDLISNQL 245 >gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 236 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 33/251 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R R N++R + V A+GS + G+T + E+V P I G I Sbjct: 5 RFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVDRGVIV 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y MLP S +R K R EI ++I AL + L + I + + Q Sbjct: 65 CKYDMLPFSVPDRAK-----PGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL--- 177 AD GTR A++T A +A D M D VAA++ G + + +DL Sbjct: 120 ADAGTRCASLTAASMACADAGLPMRDL-------------VAAVAAGKIGDHVCLDLSKE 166 Query: 178 --DYGE-DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ E + DV F + I+ +Q S+D ++ + K+ + +L+ Sbjct: 167 EEDFHEGEGATDVPIAF-LPSKNEILLLQLDGR---VSRDELKKVIEVGKEGAMKIYELE 222 Query: 235 KDVI----SNE 241 K+ + SNE Sbjct: 223 KEALKRRFSNE 233 >gi|227830375|ref|YP_002832155.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus L.S.2.15] gi|229579193|ref|YP_002837591.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus Y.G.57.14] gi|238619849|ref|YP_002914675.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus M.16.4] gi|284997881|ref|YP_003419648.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5] gi|259645403|sp|C4KHE3|ECX2_SULIK RecName: Full=Probable exosome complex exonuclease 2 gi|259645404|sp|C3MQ47|ECX2_SULIL RecName: Full=Probable exosome complex exonuclease 2 gi|259645407|sp|C3NED0|ECX2_SULIY RecName: Full=Probable exosome complex exonuclease 2 gi|227456823|gb|ACP35510.1| 3' exoribonuclease [Sulfolobus islandicus L.S.2.15] gi|228009907|gb|ACP45669.1| 3' exoribonuclease [Sulfolobus islandicus Y.G.57.14] gi|238380919|gb|ACR42007.1| 3' exoribonuclease [Sulfolobus islandicus M.16.4] gi|284445776|gb|ADB87278.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5] Length = 275 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 28/232 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------- 114 +LP + G + E+ R++ R+LR D AL +++I Sbjct: 87 NVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSVW 138 Query: 115 ----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVA 162 D V+ G A + AL++ + +E SN F++++ L V Sbjct: 139 TVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVV 198 Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 +S + Y IVD D E+S +D +F T IV +Q S + + QD Sbjct: 199 TVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQD 250 >gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae] gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae] Length = 246 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 19/184 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59 R+ GR+ +++R++ V A+GS ++ G+T L T +V +H + Sbjct: 13 RIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATVYGPHEVRKGRGKIQHDRAVV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 ++ M STG R R + RSQE+ + + +V+ QI I ++ Sbjct: 73 NCQFSMATFSTGERKSRP----KGDRRSQEMSMHLRQTFEAVIVTELFPRSQIDIYVQIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG A + A +A+ D M+D +V A + G + P++D+ Y Sbjct: 129 QADGGNYCACVNAATLAVIDAGIPMKD-------------YVCACTAGFIQDSPLLDISY 175 Query: 180 GEDS 183 E+S Sbjct: 176 VEES 179 >gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str. Marburg] gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter marburgensis str. Marburg] Length = 231 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 100/240 (41%), Gaps = 23/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59 +R GR +++R + + + + A+GS ++FG +L + + ++ I Sbjct: 7 VREDGRAFDELRPLRIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 66 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R KR RS EI ++ ALR + L I + +V+ Sbjct: 67 RCRYNMAPFSVEER-KRPG----PDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVL 121 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +A+GGTR A IT A VAL D M D V A + G + ++DL Sbjct: 122 EAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKVNDQVVLDLSE 168 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D ++ + I +Q S D F L+LA + + ++QK+ + Sbjct: 169 EEDKAGQADVPVAILPRTREITLLQSD---GNLSDDEFERALDLAVEGCLRIHEVQKEAL 225 >gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii] Length = 246 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 19/185 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--W 58 R GR+ +++R+I V + A+GS ++ G+T +L T ++ H Sbjct: 12 FRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKVL 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + +Y M STG R R + RSQE+ + R ++ + QI I V Sbjct: 72 LNCQYSMATFSTGERKTRP----KGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q+DGG A + A +A+ D M D +V A + +L P+VD+ Sbjct: 128 LQSDGGNYCACVNAATLAVIDAGIPMRD-------------YVCACTSSLLEDTPVVDIS 174 Query: 179 YGEDS 183 Y E+S Sbjct: 175 YLEES 179 >gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4] gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4_'5-way FS'] Length = 235 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 28/194 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R R+ +++R + + A+GS K G+T + E+V P I G I Sbjct: 5 RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIV 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +Y MLP S +R R G R EI ++I AL V L + + + + Sbjct: 65 CKYDMLPFSVPDR-------ARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYI 117 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL- 177 QAD GTR A++T A +A D M D VAA++ G + +DL Sbjct: 118 TQADAGTRCASLTAASMACADAGLPMRDL-------------VAAVAAGKIGDSICLDLT 164 Query: 178 ----DYGEDSTIDV 187 D+ E DV Sbjct: 165 KEEEDFHEGGATDV 178 >gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius] Length = 245 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 25/226 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59 RL GR+ ++R++ V A+GS ++ G+T L +V M T H I Sbjct: 13 RLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVI 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +Y M ST R +R G R S E+ + + + V + QI I + Sbjct: 73 NCQYSMATFSTAERKRRP-----HGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKI 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q+DGG +A + A +A+ D M D +V A + G + P+ DL Sbjct: 128 LQSDGGNYSACVNAATLAVIDAGIPMRD-------------YVCACTAGFVDETPLADLC 174 Query: 179 YGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 + E+S A ++ GHI +Q A QDH ++ A Sbjct: 175 HAEESGGGTSLALALLPRGGHIALLQMDAR---LHQDHLETLMEAA 217 >gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864] Length = 252 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 26/188 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-----PMWIRNTK 55 +R+ GR+ N++R I V A+GS ++ G+T +L T +V P+ R Sbjct: 14 LRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDR--- 70 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 I EY + +T R K R R+ ++ + A V QI I Sbjct: 71 -AIINCEYRVASFATAERKK----PVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIF 125 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 V+Q+DGG R I A +AL D M+D V A S G + P++ Sbjct: 126 LQVLQSDGGNRAVCINAATLALMDAGIAMKD-------------FVCACSVGCIDDTPLL 172 Query: 176 DLDYGEDS 183 D++Y EDS Sbjct: 173 DINYIEDS 180 >gi|325959905|ref|YP_004291371.1| 3' exoribonuclease [Methanobacterium sp. AL-21] gi|325331337|gb|ADZ10399.1| 3' exoribonuclease [Methanobacterium sp. AL-21] Length = 263 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 22/247 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++ REISL V + AEGS VK G+T ++ A + P G + Sbjct: 22 RTDGRAFDEYREISLEAGVIEKAEGSARVKIGNTQIIIGAKPQIGTPFG-DTPNVGVLMT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 +LP + N SG S E+ R+ R +R VVDL L G + I Sbjct: 81 NTELLPMAAPN-----FESGPPDENSVELSRVTDRCIREGEVVDLEKLCIVPGEKVWMIF 135 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKF-----QLSQVLKGHVAAISCG 167 +D V+ DG AA+ G+ AL + L + ++ L + A +S Sbjct: 136 LDLHVVDYDGNLMDAAVLGSVAALMNTRLPEAKIIDDEVVLDYDNLIPLPINDTALMSTF 195 Query: 168 MLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G I+D E+ + + +T G+I +Q E+ T +Q+ +++AK + Sbjct: 196 AKIGEELIIDPSLEEEEVMGARLSIGITKDGNICAMQKGGEK-TLTQEEVLKAVSIAKIK 254 Query: 227 IADLIKL 233 A+L KL Sbjct: 255 TAELRKL 261 >gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM 2088] gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus DSM 2088] Length = 270 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGWI 59 RL GR + R+I + V AEGS VK GDT +L T+ E P N G I Sbjct: 26 RLDGRSFYEFRDIKIKTGVISKAEGSARVKLGDTQVLVGVKPTIGEPFP---DNPNLGII 82 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQ-- 111 +LP ++ G RS E+ R++ R +R +++DL L G + Sbjct: 83 ITNSELLPMASPT-----FEPGPPDERSIELARVVDRCIRESNMLDLEKLCIIEGEKVWI 137 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQV----LKGHVAAI 164 + ID ++ DG A++ GA AL D +ED S V +K VA Sbjct: 138 LFIDLHILDYDGNLFDASVLGAVAALMDTKLPKVSIEDDEVVIDDSSVELLDIKDKVAMC 197 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + + ++D E+ + + M G I +Q + + S++ +N+A+ Sbjct: 198 TFAKIGDELVLDPSLEEEEILTARLSIGMNSEGKICAMQKGG-KGSLSREDISKAINIAE 256 Query: 225 DRIADLIK 232 ++ +L++ Sbjct: 257 EKTPELLQ 264 >gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 246 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 24/191 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RL GR N++R + + + A GS +++G+ +L +E P + +T I Sbjct: 16 RLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIK 75 Query: 61 AEYGMLPRST-GNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P S+ G+ GR G R+ EI ++ +VV L +I I + Sbjct: 76 CRYSMAPFSSMGDH-------GRSGPNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIE 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ++Q+DGGTR A IT A VAL + H++D V A+S G + + ++D+ Sbjct: 129 ILQSDGGTRAAGITAAAVALANAGIHVKDM-------------VYAVSAGRIDEHVVIDV 175 Query: 178 DYGEDSTIDVD 188 + ED+ D D Sbjct: 176 NMIEDNYSDAD 186 >gi|15897635|ref|NP_342240.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus P2] gi|284174961|ref|ZP_06388930.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus 98/2] gi|29337006|sp|Q9UXC0|ECX2_SULSO RecName: Full=Probable exosome complex exonuclease 2 gi|71042716|pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome gi|71042718|pdb|2BR2|C Chain C, Rnase Ph Core Of The Archaeal Exosome gi|71042720|pdb|2BR2|E Chain E, Rnase Ph Core Of The Archaeal Exosome gi|71042722|pdb|2BR2|G Chain G, Rnase Ph Core Of The Archaeal Exosome gi|71042724|pdb|2BR2|I Chain I, Rnase Ph Core Of The Archaeal Exosome gi|71042726|pdb|2BR2|K Chain K, Rnase Ph Core Of The Archaeal Exosome gi|71042728|pdb|2BR2|M Chain M, Rnase Ph Core Of The Archaeal Exosome gi|71042730|pdb|2BR2|O Chain O, Rnase Ph Core Of The Archaeal Exosome gi|71042732|pdb|2BR2|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome gi|71042734|pdb|2BR2|S Chain S, Rnase Ph Core Of The Archaeal Exosome gi|71042736|pdb|2BR2|U Chain U, Rnase Ph Core Of The Archaeal Exosome gi|71042738|pdb|2BR2|W Chain W, Rnase Ph Core Of The Archaeal Exosome gi|83754538|pdb|2C37|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754540|pdb|2C37|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754542|pdb|2C37|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754544|pdb|2C37|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754546|pdb|2C37|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754548|pdb|2C37|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754550|pdb|2C37|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754552|pdb|2C37|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754554|pdb|2C37|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754556|pdb|2C37|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754558|pdb|2C37|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754560|pdb|2C37|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754562|pdb|2C38|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754566|pdb|2C38|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754568|pdb|2C38|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754570|pdb|2C38|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754572|pdb|2C38|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754574|pdb|2C38|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754576|pdb|2C38|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754578|pdb|2C38|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754580|pdb|2C38|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754582|pdb|2C38|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754586|pdb|2C39|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754588|pdb|2C39|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754590|pdb|2C39|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754592|pdb|2C39|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754594|pdb|2C39|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754596|pdb|2C39|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754598|pdb|2C39|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754600|pdb|2C39|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754602|pdb|2C39|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754604|pdb|2C39|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754606|pdb|2C39|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754608|pdb|2C39|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|313507220|pdb|2C38|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|313507221|pdb|2C38|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|6015744|emb|CAB57571.1| conserved hypothetical protein [Sulfolobus solfataricus P2] gi|13813902|gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261602404|gb|ACX92007.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2] Length = 275 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 28/233 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 27 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------ 114 +LP + G + E+ R++ R+LR D AL +++I Sbjct: 86 VNVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSV 137 Query: 115 -----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHV 161 D V+ G A + AL++ + +E SN +++ L V Sbjct: 138 WTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPV 197 Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 IS + Y +VD D E+S +D +F T IV +Q S + + QD Sbjct: 198 VTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQD 250 >gi|126031137|pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome gi|145579800|pdb|2JEA|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna gi|145579804|pdb|2JEB|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions Length = 277 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 28/233 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 29 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 87 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------ 114 +LP + G + E+ R++ R+LR D AL +++I Sbjct: 88 VNVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSV 139 Query: 115 -----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHV 161 D V+ G A + AL++ + +E SN +++ L V Sbjct: 140 WTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPV 199 Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 IS + Y +VD D E+S +D +F T IV +Q S + + QD Sbjct: 200 VTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQD 252 >gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter thermautotrophicus str. Delta H] gi|29336573|sp|O26779|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1 gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta H] Length = 240 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 27/242 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59 +R GR +++R + + + + A+GS ++FG +L + + ++ I Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P S R R G RS EI ++ ALR + L I + + Sbjct: 76 RCRYNMAPFSVEER-------KRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIE 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++A+GGTR A IT A VAL D M D V A + G + ++DL Sbjct: 129 VLEAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKVGDQVVLDL 175 Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ED D ++ + I +Q + + F L+LA + + ++QK+ Sbjct: 176 SEEEDKEGQADVPVAILPRTREITLLQSD---GNLTPEEFERALDLAVEGCLRIHEVQKE 232 Query: 237 VI 238 + Sbjct: 233 AL 234 >gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium M1] gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium M1] Length = 236 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 27/227 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57 +R GR +++R I + V K A+GS ++ G +L A++ +IR G Sbjct: 11 LRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKIL--ASVYGPRESYIRRLLKPNTG 68 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 I Y M P S +R KR R S EI ++ ALR + L + + + + Sbjct: 69 VIRVRYNMAPFSVDDR-KRPGPDRR----STEISKIAADALRPALMLESFPRSMVDVSIE 123 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 VI+A+GGTR A IT A VAL D M+D V + G + ++DL Sbjct: 124 VIEAEGGTRCAGITAAAVALADAGIPMKDI-------------VVGCAAGKVNDEIVLDL 170 Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 ED D +M +G I +Q +++ F L+LA Sbjct: 171 SEKEDKEGQADVPIAIMPRTGEITLLQAD---GNLTEEEFEEALDLA 214 >gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia SFB1] Length = 245 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ ++ R I + K A+GS ++FGD +L V P + NT G + Sbjct: 16 IRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R K A S R+ EI ++I AL V L + + +V+ Sbjct: 76 RVRYHMEPFSVTER-KNPAPSRRE----IEISKVIKEALEPAVMLEKFPRTAVDVFIEVL 130 Query: 120 QADGGTR 126 QADGGTR Sbjct: 131 QADGGTR 137 >gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative [Ixodes scapularis] gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative [Ixodes scapularis] Length = 246 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 21/186 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---HGW 58 RL GR+ N+ R+I V A+GS ++ G+ +L A P R+ Sbjct: 13 RLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLA-AVYGPHEPRGNRSRALHDRVL 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + ++ M ST R +R R +SQE+ I + + + QI I +V Sbjct: 72 VNCQFSMATFSTFERKRRP----RGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q+DGGT + + A +AL D LK +V A S G + G P+VD+ Sbjct: 128 LQSDGGTLSVCVNAATLALIDA-------------GIALKDYVCACSVGFIDGVPLVDIS 174 Query: 179 YGEDST 184 E+S Sbjct: 175 SIEESN 180 >gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio] gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio] gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio] gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio] Length = 245 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 99/245 (40%), Gaps = 33/245 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 RL GR+ ++R++ V A+GS ++ G+T L P IR ++ Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVY----GPHEIRGSRSKSLHD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIII 114 I +Y M ST R +R G R S E+ + + + V QI I Sbjct: 69 RAIINCQYSMATFSTAERKRRP-----HGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDI 123 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++QADGG +A + A +AL D M D +V A S G + P+ Sbjct: 124 YVKILQADGGNYSACVNAATLALVDAGIPMRD-------------YVCACSAGFVEDTPL 170 Query: 175 VDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 DL + E+S A ++ SG+I +Q A QDH ++ A + K+ Sbjct: 171 ADLCHAEESGGGTALALALLPRSGNIALLQMDAR---LHQDHLDTLMEAAMTACKEFSKV 227 Query: 234 QKDVI 238 V+ Sbjct: 228 LDSVV 232 >gi|302392342|ref|YP_003828162.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum DSM 5501] gi|302204419|gb|ADL13097.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum DSM 5501] Length = 708 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 112/238 (47%), Gaps = 37/238 (15%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKHGWITAEYGM 65 RE++L T ++++ A GS LV++G+T +L TAT+++ P+ I + + G Sbjct: 13 RELTLETGKLAQQANGSVLVRYGETVILVTATMDDPRGMDYFPLMINYEERLY---SVGK 69 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P G +KRE GR + R+I R LR + Q+I + D Sbjct: 70 IP---GGFIKRE---GRPSEAATLTSRLIDRPLRPLFPEGMRHDVQVIATVLSVDNDNSP 123 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVD--LDYGED 182 AA+ GA AL +S + +G + ++ G++ G I++ ++ E+ Sbjct: 124 EVAAMIGASAAL--------------SISDIPFEGPIGGVNVGLVDGELILNPTVEEQEE 169 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 S++D+ V + ++ V+ +A T +D ++ ++ +IKLQ+++++ Sbjct: 170 SSLDL---IVAGNKDGVMMVESAANEVT--EDKMIEAIDYGHQKLQGIIKLQEEMVAK 222 >gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex] Length = 246 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 40/251 (15%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55 +R+ GR+ N++R I + + A+GS ++ G+T +L P IR +K Sbjct: 12 LRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVY----GPHEIRGSKSKALH 67 Query: 56 -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 ++ +Y S G R +R R +S E+ + + + QI I Sbjct: 68 DKAFVNCQYSTATFSMGERKRRP----RGDRKSTEMSTHLEETFAAAIRTELYPRSQIDI 123 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 +V+QADGG TA + A +AL D LK V + + ++ P+ Sbjct: 124 FVEVLQADGGNYTACVNAAMMALVDA-------------GVPLKDTVVSCTASLVKDVPL 170 Query: 175 VDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 VD+++ E S + ++ SG IV + + F DH +L+ A IK Sbjct: 171 VDVNHVERSGGSPELVVSILPHSGEIVYMSLTQR---FHIDHLSKVLDTA-------IKG 220 Query: 234 QKDV--ISNEV 242 KD+ I NE+ Sbjct: 221 CKDIGAILNEI 231 >gi|299689088|pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|299689091|pdb|3L7Z|D Chain D, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|299689094|pdb|3L7Z|G Chain G, Crystal Structure Of The S. Solfataricus Archaeal Exosome Length = 271 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 24/229 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 27 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------ 114 +LP + G + E+ R++ R+LR D AL +++I Sbjct: 86 VNVELLPLAYTT-----FEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSV 137 Query: 115 -----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCS-NKFQL--SQVLKGHVAAIS 165 D V+ G A + AL++ + +E S NK ++ L V IS Sbjct: 138 WTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQISVNKNEVVGKLPLNYPVVTIS 197 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 + Y +VD D E+S +D +F T IV +Q S + + QD Sbjct: 198 VAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQD 246 >gi|242399325|ref|YP_002994749.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM 739] gi|242265718|gb|ACS90400.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM 739] Length = 269 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 98/238 (41%), Gaps = 23/238 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR R +++ V + AEGS LVK G+T +L +E P + G IT Sbjct: 21 RIDGRGLEDFRPLTVETNVIEKAEGSALVKLGNTQVLVGIKVELGEP-FPDLPDMGVITT 79 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQII 113 +P ++ G + E+ R+I R +R +DL L R I Sbjct: 80 NVEFVPLASPT-----FEPGPPDESAIELARIIDRGIRESQAIDLEKLVIVPGKLVRVIF 134 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGHVA----AIS 165 ID V+ DG A+ GA AL + + E+ L + K V ++ Sbjct: 135 IDVHVLDHDGNLLDASGIGAIAALLSTKIPKVDYNEEIEEVVMLEEYEKLPVKRIPIPVT 194 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 + G +VD ++ E+ +D ++G+I VQ S E +F + ++LA Sbjct: 195 LAKIGGNLVVDPNFEEEQVMDGKITITTDENGYISAVQKS-EGGSFKLEEVVYAVDLA 251 >gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium dendrobatidis JAM81] Length = 253 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 24/228 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGW 58 +R+ GR+ ++R + + A+GS ++ G+T + E K+ + Sbjct: 24 LRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAVYGPKESKI-QSAQLHDRAV 82 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I EY + S+G R + ++ R EI +I R VV S +I I + Sbjct: 83 INVEYNVASFSSGER----KLKMKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQI 138 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DGG AAI +A+ D M D +V A S G G ++DL+ Sbjct: 139 LQLDGGALHAAINATCLAMIDAGIPMSD-------------YVIACSAGFSNGSALLDLN 185 Query: 179 YGEDST-IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 Y E+S + V ++ SG + + + + +HF +LNLA + Sbjct: 186 YIEESAELPVLTAALLPKSGKLTML---SMESRLHLNHFQDVLNLATE 230 >gi|302348936|ref|YP_003816574.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15] gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15] Length = 242 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 21/193 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 RL GR ++MR + + V A+GS +V +G T +L E + + + Sbjct: 15 RLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRASLF 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDVI 119 Y M P ST R + V R R EI +++ AL VV ++ L R +I + +V+ Sbjct: 75 VRYHMAPFSTEER--KSPVPTR---REVEISKVLREALEPVV-ITELFPRTVIEVYVEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q+DGGTRTA+ T A +AL D M + VA ++ G + ++DL+ Sbjct: 129 QSDGGTRTASATAASLALADAGIPM-------------RALVAGVAIGKVDNVVVLDLNE 175 Query: 180 GEDSTIDVDANFV 192 ED+ + D V Sbjct: 176 PEDNFGEADMPVV 188 >gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66] gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris RN66] Length = 250 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 10/149 (6%) Query: 1 MRLSGRQENQMREIS--LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG- 57 R+ GR+ N++R IS ++ S ++ S + G T L+T+ + +P+ +++ G Sbjct: 16 FRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITS--ICGPIPLLNSSSQSGI 73 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + M P T +R KR G+ E +I R S + + S QIII+ + Sbjct: 74 QLHCNFRMSPFCTPDRRKR----GKNDRFCTENSLIITRTFESAISEIYVKS-QIIININ 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED 146 V++ADGG R+AAI +AL + M+D Sbjct: 129 VLEADGGVRSAAINATSLALANAGIGMKD 157 >gi|167465303|ref|ZP_02330392.1| ribonuclease PH [Paenibacillus larvae subsp. larvae BRL-230010] Length = 71 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 36/56 (64%) Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 S VD N VMT GH VEVQG+ E + FS+D ML LA++ I LI+LQ++ + Sbjct: 1 SQAHVDMNVVMTGRGHFVEVQGTGEESPFSKDDLDRMLGLAEEGILRLIELQREAL 56 >gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar] gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar] Length = 245 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 25/241 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59 RL GR+ ++R++ V A+GS ++ G+T L +V T H I Sbjct: 13 RLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVI 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +Y M ST R +R G R S E+ + + + V + QI I + Sbjct: 73 NCQYSMATFSTAERKRRP-----HGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKI 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q+DGG +A + A +A+ D M D +V A + G + P+ DL Sbjct: 128 LQSDGGNYSACVNAATLAVVDAGIPMRD-------------YVCACTAGFVDETPLADLC 174 Query: 179 YGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + E+S A ++ GHI +Q A QDH ++ A + K+ +V Sbjct: 175 HAEESGGGTSLALALLPRGGHIALLQMDAR---LHQDHLETLMEAAMTACKGVSKVLDEV 231 Query: 238 I 238 + Sbjct: 232 V 232 >gi|294668515|ref|ZP_06733612.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309478|gb|EFE50721.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 65 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 38/63 (60%) Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +DY EDS D D N VM G I+E+QG+AE A F D ++ LA+ IA+L LQ+ Sbjct: 1 MDYPEDSGCDSDINVVMNGEGKIIEIQGTAEGAPFDFDELAKLIKLAQKGIAELSALQQR 60 Query: 237 VIS 239 ++ Sbjct: 61 ALA 63 >gi|298674552|ref|YP_003726302.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303] gi|298287540|gb|ADI73506.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303] Length = 260 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 15/237 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R +++R+IS+ + AEGS V +GDT L+ L+ P + G I Sbjct: 23 REDNRAFDEIRDISIETDIIGNAEGSAKVYWGDTQLIVGVKLQVGEP-FPDTPDKGIIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 + P ++ + +G + EI R++ R +R +DL+ L + + Sbjct: 82 SLELNPIAS-----PDFEAGPPKEDAIEIARVVDRGIRESGAIDLNKLCITEGEEVWTVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID +V+ DG AA GA AL E + ++ IS + G Sbjct: 137 IDVNVLNDDGNIMDAASIGAIAALMTTNIPAESEGYGEDMMMPVRDIPVGISLVDISGEL 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +VD Y E+S D V G I +Q S + +++ N+A+ R +++ Sbjct: 197 MVDPTYNEESVCDTKITVVSNQDGSISAMQKSG-TGSLTEEKVLQAANIARTRASEI 252 >gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] Length = 208 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 10/127 (7%) Query: 24 AEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGR 82 A+GS +++G ++ E P ++ + A Y M P S R R Sbjct: 1 ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDER-------KR 53 Query: 83 QGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140 G R+ E+ ++I AL SV+ + I + +V+QAD GTR A IT A +AL D Sbjct: 54 PGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADA 113 Query: 141 LQHMEDC 147 M D Sbjct: 114 GIPMRDL 120 >gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6] gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6] Length = 253 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 24/237 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +++R + + + A+GSC ++ G ++ +V P ++ + Sbjct: 16 LRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAVYGPREVHPRHLQEVTRAIV 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDV 118 Y M S R KR RS E+ ++ AL V+ L++ R +I + +V Sbjct: 76 RYRYNMASFSVEER-KRPG----PDRRSYELSKVSREALEPVI-LTSFFPRSVIDVFVEV 129 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QAD GTRTA I A VAL +K +++ + G + ++D Sbjct: 130 LQADAGTRTAGINAAAVALA-------------DAGIPMKSMISSCAAGKVGDTIVLDPM 176 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED+ D MT +G I +Q + D F + +A D+ +LQ+ Sbjct: 177 KEEDNFGQADLPIAMTPNGDITLMQMD---GNLTPDEFGQAVTMAMKGAKDIYELQR 230 >gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545] Length = 245 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 22/224 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWI 59 +RL GR+ + R++ V A+GS + G+T ++ E V R+ + I Sbjct: 9 LRLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDERAII 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E+ STG R R G+ RS E+ +I +AL + V + +I + V+ Sbjct: 69 KCEFSQAAFSTGERRAR----GKGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG R AAI A +A+ + M+D +AA S G L G P++DL+Y Sbjct: 125 QADGGVRAAAINAAVLAIANAGIPMKDT-------------MAACSAGYLDGTPLLDLNY 171 Query: 180 GEDS----TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219 E+ + V + D +V+ A F H A+ Sbjct: 172 VEEGGGGVRVHVATHASRGDKVVVVQTDNKASVEVFEPVHALAV 215 >gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica] Length = 216 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 34/196 (17%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R GR+ + R+I V +A+GS +++ G+T +L A + PM ++HG ++ Sbjct: 9 FRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLA-AVFGPRQPMA---SQHGAVS 64 Query: 61 -------AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 EY ++ R +R R ++QEI + + + + L+ L R I Sbjct: 65 QEKCIVDVEYSRAAFASAERKRR----ARGDKKAQEISLSLKKTFEATI-LTTLYPRSAI 119 Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--- 169 I +V+QADGG + A +AL D + D A+SCG+ Sbjct: 120 SIFVEVLQADGGDYAVCVNAATLALIDAGIPIRDV-------------CCAVSCGVAIKD 166 Query: 170 -CGYPIVDLDYGEDST 184 Y ++DL Y E+S Sbjct: 167 NVAYSLLDLAYSEESA 182 >gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A] gi|259645399|sp|A0RXU1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1 gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A] Length = 243 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ ++ R + +T V A GS ++FGD +L V P + T+ G + Sbjct: 16 IRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R K+ A S R+ EI ++I AL + L + + +V+ Sbjct: 76 RCRYHMSPFSVSER-KKPAPSRRE----IEISKVIKEALEPSLMLEQFPRTAVDVFIEVL 130 Query: 120 QADGGTR 126 QADGG+R Sbjct: 131 QADGGSR 137 >gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus] Length = 244 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 66/165 (40%), Gaps = 18/165 (10%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRSTGNRVKREA 78 V K A+GS ++ G T ++ +V R G + EY + P S R KR Sbjct: 32 VFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVNCEYNVAPFSGSERKKRRP 91 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 R+G EI + + L QI I VIQ+DGG I A +AL Sbjct: 92 TE-RKG---MEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALV 147 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 D M D V A S G L G P++DL+Y E + Sbjct: 148 DAGVAMSDL-------------VVACSAGYLDGMPVMDLNYVEQA 179 >gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130] gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130] Length = 263 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 99/240 (41%), Gaps = 23/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58 R GR++ ++R++S+ A+GS L+ G T +L + + M +T H Sbjct: 16 FRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMR-SHTFHDRAN 74 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I E + STG R KR + G + R E I VV S QI I + Sbjct: 75 INVEVTVASFSTGERRKR--LKGDK--RILEFAATIKSTFEPVVRTSLYPRSQIDIYIQI 130 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DGGT I G +AL + M D V AIS G+ P++DL Sbjct: 131 LQQDGGTLQTCINGTTLALINAGIPMSD-------------FVCAISGGVHSTSPMLDLT 177 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + VM S +V V + F +L LA+D A L K K+ + Sbjct: 178 TLEENDVPHVTVAVMPKSKKVVLVTMETR---LHVERFEEVLCLARDAAAVLHKEMKEAV 234 >gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica] Length = 216 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 34/196 (17%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R GR+ + R+I V +A+GS +++ G+T +L A + PM ++HG ++ Sbjct: 9 FRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLA-AVFGPRQPMA---SQHGAVS 64 Query: 61 -------AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 EY ++ R +R R ++QEI + + + + L+ L R I Sbjct: 65 QEKCIVDVEYSRAAFASAERKRR----ARGDKKAQEISLSLKKTFEATI-LTTLYPRSAI 119 Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--- 169 I +V+QADGG + A +AL D + D A+SCG+ Sbjct: 120 SIFVEVLQADGGDYAVCVNAATLALIDAGIPIRDV-------------CCAVSCGVAIKD 166 Query: 170 -CGYPIVDLDYGEDST 184 Y ++DL Y E+S Sbjct: 167 NVAYSLLDLAYSEESA 182 >gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus yFS275] gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus yFS275] Length = 243 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 18/186 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R GR+ N+MRE V K A GS ++ G+T +L E + +I Sbjct: 13 LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFI 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E P S +R KR R R QE I R + + QI I +V+ Sbjct: 73 NVELNFAPFSLIDRKKRH----RSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + DGG I A +AL D M D +V + G+ ++DL+ Sbjct: 129 EDDGGAIATCINAATLALIDAGIAMVD-------------YVCCATAGIYETQVLLDLNT 175 Query: 180 GEDSTI 185 E+S I Sbjct: 176 NEESDI 181 >gi|147919674|ref|YP_686582.1| exosome complex RNA-binding protein Rrp42 [uncultured methanogenic archaeon RC-I] gi|121687882|sp|Q0W2Y7|ECX2_UNCMA RecName: Full=Probable exosome complex exonuclease 2 gi|110621978|emb|CAJ37256.1| putative exosome complex exonuclease 2 [uncultured methanogenic archaeon RC-I] Length = 260 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 23/237 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++ R IS+ V AEGS VK GD+ ++ ++ P + G I Sbjct: 23 RADGRKFDEFRAISVETGVINKAEGSARVKIGDSQVVVGVKIQPGEP-FPDTPDSGVIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113 ++P ++ SG + E+ R++ R +R +DLS L G + + Sbjct: 82 NLELVPLASPT-----FESGPPREDAIELARVVDRGVRESGAIDLSKLCIESGQKVWMVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM----L 169 ID V+ DG AA GA A L+ + ++KF L + +K + + G+ + Sbjct: 137 IDVHVLDHDGNLMDAASLGAIAA----LKATKIPNSKFGLGEDVKLPLNDVPIGVTAVNI 192 Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G ++D E+S + G I +Q S T + D ++ LAK++ Sbjct: 193 GGAIMLDPSLDEESVAPCKLTVITNKEGAISGMQKSG-VGTLTPDQINHIIRLAKEK 248 >gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum] Length = 244 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 29/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+ N++R +++ V A+GS + G+T + + I Sbjct: 12 LRIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTKITVAIYGPHESTTQKSLFDRASIK 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 E+ M ST R V R + E +I +A S V QI I V+Q Sbjct: 72 CEFAMSSFSTSER----KVKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIYVQVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +DGG ++AAI +A+ D M D +V A S + G ++DL++ Sbjct: 128 SDGGLKSAAINAVTLAMIDAGIPMRD-------------YVCACSATFIEGSALMDLNHM 174 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK---DRIADLIKLQ-- 234 E+ + D + G ++ + ++ Q+ F ++L++A +I L++ Q Sbjct: 175 EERSGGADLLLSIHPQLGGVISINMESK---VPQEMFESVLDMALAGCKKIYYLLQEQVK 231 Query: 235 ---KDVISNEV 242 KD++SN++ Sbjct: 232 KHSKDLMSNQL 242 >gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f. nagariensis] gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f. nagariensis] Length = 245 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 93/227 (40%), Gaps = 22/227 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ ++R I+ V A+GS + + G+T +L V + I Sbjct: 9 LRLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAAIV 68 Query: 61 A-EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG R +R R S E+ +I L + + QI + V+ Sbjct: 69 VCEYSMAAFSTGERRRRGKGDRR----STELSMVIRNTLEQAILRELMPRSQIDVYVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR C L+ VA+ + G L G P++DL++ Sbjct: 125 QADGGTR-------------CAAINAAVLALAAAGVPLRDLVASCAAGYLDGTPLLDLNF 171 Query: 180 GEDSTIDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 EDS D + G +V VQ D F A+L+LA+D Sbjct: 172 TEDSGGGPDLAVALAPREGLLVLVQMDNR---LPVDTFQAVLDLARD 215 >gi|257096723|sp|B3DZ86|PNP_METI4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 707 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 30/227 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++K+A+GS V +G+T +L TA L+E ++ A G P G Sbjct: 18 TGKLAKFADGSVTVSYGETAVLVTAVSVTELKEDQDFLPLQVEYREKAAAAGRFP---GG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++E GR + RMI R LR + QI+ ++ ADG AI Sbjct: 75 YFRKE---GRPTDKEILTSRMIDRPLRPLFPKGYFYETQIL--GTLLSADGQNDPDVMAI 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL + D G V A+ G + G I++ + E D+D Sbjct: 130 NGASAAL-----MVSDIP--------FYGPVGAVRIGQIDGRWIINPTHREREISDIDLV 176 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +V ++ + + ++GSA F ++ F L A + ++I QK++ Sbjct: 177 YVGSEH-YPLMIEGSARE--FPEEEFVKALEFAHQHVQEVIAAQKEL 220 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 22/175 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR +R I++ V + GS L G+T L ATL +++ + + Sbjct: 313 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQS 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + S R+ G +R + + S D I + Sbjct: 373 KRFLLHYFFPPFSVGEVGRITGQSRREIGHGALAERSLLPVIPSETDF----PYAIRVSS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 ++++++G T A + G +AL D LK VA IS G++ G Sbjct: 429 EILESNGSTSMATVCGGSLALMDA-------------GVPLKTSVAGISVGLVKG 470 >gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis KIN4/I] gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis KIN4/I] Length = 241 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 107/245 (43%), Gaps = 29/245 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWIT 60 R GR +R + + V A+GS ++ G T ++ + PM + I Sbjct: 15 RHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDRAVIR 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDVI 119 Y M P ST R K A S R+ E+ ++I AL + + L+ L R II + +VI Sbjct: 75 CRYHMAPFSTDER-KNPAPSRRE----IELSKVIREALEATI-LTHLFPRTIIDVFIEVI 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +ADGGTRTAA+T +KG VA ++ G + G ++D+D Sbjct: 129 RADGGTRTAALT-------------AASLALADAGIPMKGLVAGVAVGKVQGTLVLDIDE 175 Query: 180 GEDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ED + D S + ++++ G E F Q L LA + I + +QK Sbjct: 176 LEDMYGEADMPVAAIPSLNKIVLLQLNGVLEPREFPQ-----ALKLAWEGIKKIHAMQKK 230 Query: 237 VISNE 241 V++ + Sbjct: 231 VLAEK 235 >gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis] gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis] Length = 249 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 29/190 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVV----YGPHEIRGSRSKMLHD 68 Query: 59 ---ITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIII 114 I +Y M STG R +R G R S E+ + + + + QI I Sbjct: 69 RCVINCQYSMATFSTGERKRRP-----HGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDI 123 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++QADGG + A +A+ D M D +V A S G + P+ Sbjct: 124 YVQILQADGGNYCTCVNAATLAVIDAGIPMRD-------------YVCACSAGFIEDTPL 170 Query: 175 VDLDYGEDST 184 DL Y E++T Sbjct: 171 ADLSYVEEAT 180 >gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus corporis] gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus corporis] Length = 253 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 29/229 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-----PMWIRNTK 55 +RL GR+ +++R+I V +GS ++ G+T +L +V P+ Sbjct: 10 LRLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAVYGPHQVRGRTKPLL----D 65 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 I +Y ST R KR R +SQE + +AL + + QI I Sbjct: 66 AAVINCQYSSAVFSTEERKKRP----RGDKKSQEKSMHLCQALSAAIKTELYPKSQIDIF 121 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPI 174 +V+Q+DGG+ +AA+ + +AL D LK +V + + + P+ Sbjct: 122 VEVLQSDGGSFSAAVNVSTLALIDA-------------GIPLKEYVTSCTASLANENIPL 168 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 VD+ Y E+S + + ++R F DH +LN A Sbjct: 169 VDVTYLEESCGGPTLTIATLPLAKKIALMEMSQR--FHLDHLEKVLNTA 215 >gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM 5219] gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM 5219] Length = 261 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 15/233 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ N++R+I+L + AEGS +V++GDT ++ ++ P + + G I Sbjct: 24 REDGRQFNELRDIALETGIIDKAEGSAMVQYGDTQVMVGVKMQVGTP-FPDSPAEGVIIT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 + P ++ + EA R+ ++ E+ R++ R +R +D++ L + + Sbjct: 83 SMELNPIASPD---FEAGPPRE--KAIEMGRIVDRGIRESGAIDINKLCITEGEEVWMVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ G AA GA AL E ++ +S + Sbjct: 138 IDVHVLNNSGNILDAASLGAIAALMTTTVPSEREGKGEDYPMPVREMPVGVSLVKIGDEM 197 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ++D YGE+S + G I +Q S + S +AK++ Sbjct: 198 VLDPTYGEESVCETRITISSNQDGSICSMQKSG-SGSLSPAQVVKASKIAKEK 249 >gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group] gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group] Length = 245 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 100/246 (40%), Gaps = 53/246 (21%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWI----- 51 R+ GR+ N+MR++ V A+GS L + G+T ++ +V W+ Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVAAHPDYWLVRLIS 69 Query: 52 -----------RNTKHGWITAE-YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR 99 TK TA+ M STG+R +R+ R RS EI +I + + Sbjct: 70 KKAKREGLRGRSRTKVSKSTAKMLWMADFSTGDR-RRKPKGDR---RSTEISLVIRQTME 125 Query: 100 SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159 + + + QI I V+QADGGTR A I A +AL D M D Sbjct: 126 ASILTHLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDI------------ 173 Query: 160 HVAAISCGMLCGYPIVDLDYGEDST--IDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217 SC DL+Y EDS DV F +T + +Q A+ D F Sbjct: 174 ---VTSCS-------ADLNYIEDSAGGPDVTVGF-LTKMDKVTLLQMDAK---LPMDTFE 219 Query: 218 AMLNLA 223 +++LA Sbjct: 220 TVMDLA 225 >gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis mellifera] Length = 284 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 59/246 (23%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54 +RL GR+ ++R+I + V A+GS ++ G+T +L T P RN+ Sbjct: 29 LRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVY----GPHQPRNSTGRSTS 84 Query: 55 --KHGWITAEYGM--LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110 G + +Y M S+G R KR+ R +SQE + A+ +++ L Sbjct: 85 KITKGIVNCQYSMAVFSLSSGER-KRKPRGDR---KSQERSLQLKHAMEAIIHLELYPRS 140 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-L 169 QI I + +Q DG A++ A +AL D +++ AI C + L Sbjct: 141 QIDIYVEALQVDGSEYCASVNAATLALIDAGIPIKN---------------YAIGCTVTL 185 Query: 170 CGYPIVDLDYGEDSTID---VDANFV-------------------MTDSGHIVEVQGSAE 207 P ++ ED+T++ +DAN+V ++ G IV QG+ + Sbjct: 186 INCPSLE---DEDNTLEKGVLDANYVEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQ 242 Query: 208 RATFSQ 213 R SQ Sbjct: 243 RLHLSQ 248 >gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas reinhardtii] gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas reinhardtii] Length = 245 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 26/229 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59 +RL GR+ ++R I+ V A+GS + + G+T +L V + G + Sbjct: 9 LRLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGALV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG R +R R S E+ +I L V L QI + V+ Sbjct: 69 VCEYSMAAFSTGERRRRGKGDRR----STELSMVIRNTLEQAVITELLPRSQIDVYVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR C L+ VA + G L G ++DL+Y Sbjct: 125 QADGGTR-------------CAAINAAVLALAAAGVPLRDLVAGCAAGYLDGTALLDLNY 171 Query: 180 GEDSTIDVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 EDS D + DS ++V++ D F A++ LA++ Sbjct: 172 TEDSGGGPDLCVALAPRLDSLYLVQMDNR-----LPVDTFQAVMELARE 215 >gi|315229928|ref|YP_004070364.1| exosome complex exonuclease 2 [Thermococcus barophilus MP] gi|315182956|gb|ADT83141.1| exosome complex exonuclease 2 [Thermococcus barophilus MP] Length = 270 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 23/238 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R + + V + AEGS VK G+T +L L+ P K G +T Sbjct: 21 RIDGRSLEDLRPLEVKVNVIEKAEGSAWVKLGNTQVLVGIKLDLGEPFPDLPDK-GVMTT 79 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQII 113 ++P ++ G R+ E+ R++ R +R +DL L R + Sbjct: 80 NVELVPLASPT-----FEPGPPDERAIELARVVDRGIRESQAIDLEKLVIIPGKLVRVVF 134 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGHVAAI----S 165 ID V+ DG A GA AL +++ E+ L + V I S Sbjct: 135 IDVHVLDHDGNLVDATGIGAIAALLSTKMPKIEYNEETGEVMMLDEYEPLPVTKIPIPVS 194 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 + G +VD + E+ +D ++G+I VQ S E +F + +++A Sbjct: 195 FAKIGGTIVVDPNLEEEHVMDGKLTITTDENGYISAVQKS-EGGSFKLEEVMYAVDVA 251 >gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642] gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642] Length = 259 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 25/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R+I + V + AEGS LVK G+T +L ++ P K G I Sbjct: 23 RIDGRKFDEIRKIEIQTGVIEKAEGSALVKLGNTQVLVGVKMQPGEPFPDAPNK-GIIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113 ++P ++ G + E+ R++ R +R VDL L + I Sbjct: 82 NAELVPLASPT-----FEPGPPDENAIELARVVDRGIRESEAVDLEKLCIEEGEKVWLIF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME--DCSNKFQLSQVLKGHVAAISCGMLCG 171 ID + DG A+ GA AL + E + + F L ++ AI+ ++ Sbjct: 137 IDIWALDDDGNLLDASALGAIAALLNTTVPAERFEVGDDFPLP--VRDLPVAITSLIVEN 194 Query: 172 YPIVDLDYGEDSTIDVDANF--VMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 +VD E S V NF + TDS +IV +Q S ++ F+ + L+ + Sbjct: 195 KILVDPIKDETS---VAKNFLTITTDSEDNIVAIQKSGSY-LLPEEKFYEAIELSIRKAR 250 Query: 229 DLIKLQKDV 237 ++ KL +V Sbjct: 251 EVRKLLAEV 259 >gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus] Length = 274 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 7/142 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59 +R GR+ ++R+I L V A+GS ++ G+T +L + I RN+ ++ Sbjct: 13 LRSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPKSNISRNSTKAFV 72 Query: 60 TAEYGM--LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y M ++G R +R R +SQE + A+ +++ L QI I + Sbjct: 73 NCQYSMAVFSFTSGERKRRP----RGDWKSQERSAQLRHAMEAIIHLELYPRSQIDIFVE 128 Query: 118 VIQADGGTRTAAITGAWVALHD 139 V+Q DG A++ + +AL D Sbjct: 129 VLQVDGSDYCASVNASTLALID 150 >gi|330508838|ref|YP_004385266.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6] gi|328929646|gb|AEB69448.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6] Length = 258 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 14/144 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q REIS+ R V + AEGS LVK G + +L ++ P + G I Sbjct: 22 RIDGRKFDQYREISIERDVIRKAEGSALVKLGSSQVLVGVKMQPGEPFQ-DSPNRGVIIT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQ--II 113 ++P ++ + G E+ R++ R +R VDL AL G + + Sbjct: 81 NAELVPLASPS-----FEPGPPNEVGIELARLVDRGVRESKAVDLEALCIEPGKKVWIVF 135 Query: 114 IDCDVIQADGGTRTAAITGAWVAL 137 ID ++ G AA GA AL Sbjct: 136 IDVHILDDCGNILDAASLGAISAL 159 >gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M] gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M] Length = 233 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 60/261 (22%), Positives = 103/261 (39%), Gaps = 52/261 (19%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR N++R+ + V A+GS + G+T + L+ + + Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKP-------GREQSNLK 53 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y MLP + G K ++ R+ E+ +I +AL + + I ++I+ Sbjct: 54 VSYRMLPFA-GEERKGLGLTRRE----IELSYIIAKALEPAIIFEEIPYLTIEASVEIIK 108 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD-- 178 AD GTR AAI +AL M K V AI+ G + ++DL+ Sbjct: 109 ADAGTRVAAINALSLALAHAGIPM-------------KALVGAIAVGKVGEKIVLDLNKQ 155 Query: 179 -------------------YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219 YGE +D+ + + ++++ GS +R + + Sbjct: 156 EEDYDSEIIKKELPQYYEYYGEGKAVDIPMA-MYKNKITLLQLDGSIDRKSLLE-----A 209 Query: 220 LNLAKDRIADLIKLQKDVISN 240 + L KD I +I LQK I + Sbjct: 210 IKLGKDGIKRMIDLQKIAIED 230 >gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis] gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis] gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis] Length = 249 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 29/189 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSKMLHD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIII 114 + +Y M STG R +R G R S E+ + + + + QI I Sbjct: 69 RSVVNCQYSMATFSTGERKRRP-----HGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDI 123 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++QADGG + A +A+ D M D +V A S G + P+ Sbjct: 124 YVQILQADGGNYCTCVNAATLAVIDAGIPMRD-------------YVCASSAGFIEDTPL 170 Query: 175 VDLDYGEDS 183 DL Y E++ Sbjct: 171 ADLSYVEEA 179 >gi|315427142|dbj|BAJ48757.1| exosome complex component RRP42 [Candidatus Caldiarchaeum subterraneum] gi|315427161|dbj|BAJ48775.1| exosome complex component RRP42 [Candidatus Caldiarchaeum subterraneum] Length = 271 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 23/172 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R+ Q R+I + V + A GS LV G T +LT +E P + G T Sbjct: 24 RIDEREPLQYRKIEIATNVVEKAHGSALVSLGKTKILTGIKVEVGTP-YPDRPNEGVFTV 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 +LP ++ + G R+ E+ R++ R +R +++ L G + I Sbjct: 83 NAELLPLAS-----KTFEPGPPDERAIELSRIVDRVIRESKAIEVEKLCIVEGQKVYMIF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165 IDC V+ DG A++ A AL + + +V+ G V A+ Sbjct: 138 IDCYVLDYDGNYFDASVLSAVAALR---------TMTLPVYRVVDGRVEAVP 180 >gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae] gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae] Length = 249 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 7/147 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + + I Sbjct: 13 LRLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTESNDVIIN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +SQE + + +AL + + QI + +V+Q Sbjct: 73 CQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHD---CLQHM 144 ADG A+ A +AL D CL + Sbjct: 129 ADGANYAVALNAATLALIDAGICLNEL 155 >gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior] Length = 272 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 97/209 (46%), Gaps = 10/209 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R+ GR+ ++R+I + V A+GS ++ G+T +L + RN+ I Sbjct: 12 LRIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAVYGPRQSRSSASRNSTKAII 71 Query: 60 TAEYGM--LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y M ++G R +R R +SQE + A+ +++ L QI + + Sbjct: 72 NCQYSMAVFSFTSGERKRRP----RGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFVE 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+Q DG A++ A +AL D +++ + ++ V K V + G ++D Sbjct: 128 VLQVDGSDYCASVNAATLALIDAGIPIKNYAIGCSVTLVNKPSVEDEDKTLATG--VLDA 185 Query: 178 DYGEDSTIDVDANFV-MTDSGHIVEVQGS 205 +Y E+ + V + V + + + +EV G+ Sbjct: 186 NYVEECSPGVTLSVVALAGTNNDIEVDGN 214 >gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia] Length = 245 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N++R I V K +GS ++ G+T +L + + + + Sbjct: 8 LRLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSNEGVVVN 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M STG R R G R S E+ + +AL + + QI + +V+ Sbjct: 68 CQYSMATFSTGERKNRP-----HGDRKSTEMSLHLRQALTAAIKTELYPRSQIDVYVEVL 122 Query: 120 QADGGTRTAAITGAWVALHD 139 QADG + A +AL D Sbjct: 123 QADGSCYCVCVNAATLALID 142 >gi|52549527|gb|AAU83376.1| 3'-5' exoribonuclease [uncultured archaeon GZfos27G5] Length = 257 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++ R+IS+ R V K AEGS VK GDT +L +E P + G I Sbjct: 23 REDGRGFHEYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ K E SG S ++ R++ R +R +DL L G + + Sbjct: 82 NAELVPLAS---PKFE--SGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVAL 137 ID V+ +G AA GA +L Sbjct: 137 IDIHVLDDNGNLVDAAALGAITSL 160 >gi|149430580|ref|XP_001515504.1| PREDICTED: similar to Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 [Ornithorhynchus anatinus] Length = 245 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 29/190 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P +R + Sbjct: 13 RVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVVY----GPHEMRGLRSRALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR-QIII 114 + ++ M STG R +R + SQ +Q+ A+ L+ L R QI I Sbjct: 69 RALVNCQFSMATFSTGERKRRPHGDRKATEMSQHLQQTFEDAI-----LTQLYPRSQIDI 123 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++QADGG A + A +A+ D L+ V A S G + P+ Sbjct: 124 YVQILQADGGNYAACVNAATLAVLDA-------------GIPLRDFVCASSAGFVEDTPL 170 Query: 175 VDLDYGEDST 184 DL Y E++ Sbjct: 171 ADLSYVEEAA 180 >gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102 [Chlorella variabilis] Length = 241 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 18/184 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59 +RL GR+ ++R++ V A+GS L + G+T +L + V + + + + Sbjct: 8 LRLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAVFGPKPVEQRSQEDERRAIV 67 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG R +R R + EI I + + L QI I V+ Sbjct: 68 KCEYAMASFSTGERRRRGKADRR----ATEIGMAIRNTMEQTILTELLPRSQIDIYVQVL 123 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR A I A +A M D VA+ + G L ++DL+Y Sbjct: 124 QADGGTRCACINAACMAAAAAAIPMRDL-------------VASCAAGYLESTALLDLNY 170 Query: 180 GEDS 183 EDS Sbjct: 171 MEDS 174 >gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae] Length = 269 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%) Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 R+I L V A+GS ++ GDT ++ + ++P I G + E+ P S Sbjct: 47 RKIYLQTGVITQAKGSAYIEIGDTKVIVSVFDPREIPNRIDYGLKGEVYCEFKYAPFSCK 106 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 R+ + Q ++ ++ +AL S V L L + Q+ + V++ DG +AAI Sbjct: 107 KRMMHQ-----QNNEEKQSSDIMRKALESTVCLHELPNFQVDVYAMVLEEDGSALSAAII 161 Query: 132 GAWVAL 137 VAL Sbjct: 162 AGGVAL 167 >gi|145592135|ref|YP_001154137.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum arsenaticum DSM 13514] gi|145283903|gb|ABP51485.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum arsenaticum DSM 13514] Length = 276 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 102/251 (40%), Gaps = 29/251 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q REI + V K A+GS VK G TH++ + P + G + Sbjct: 29 RVDGRALDQTREIEIKTGVVKTADGSAEVKLGKTHVIAGVKVGLGQP-FPDAPDEGVLVV 87 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQII--I 114 +LP ++ G + E+ R++ R +R VD L G + + + Sbjct: 88 SAEVLPHASPY-----TEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWV 142 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164 D VI DG AA + AL + D +NK L A+ Sbjct: 143 DLYVINDDGNLVDAANLASVAALKNTQLPAVVKDESGAVKLDRNNKSPLPLETSKVPVAV 202 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA- 223 S G + +D ++ E+ ++D F +++ IV Q + F+Q A L+LA Sbjct: 203 SVGKIANVLFLDPNFEEELSLDGRVTFTISED-RIVAAQKTL--GYFTQPELEAALDLAI 259 Query: 224 --KDRIADLIK 232 +DR + +K Sbjct: 260 KGRDRYLEALK 270 >gi|48477465|ref|YP_023171.1| exosome complex RNA-binding protein Rrp42 [Picrophilus torridus DSM 9790] gi|48430113|gb|AAT42978.1| ribonuclease PH [Picrophilus torridus DSM 9790] Length = 260 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 17/211 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR N R+I + A GS +V+ G T ++ +EE P + G + Sbjct: 26 RLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGVKIEEGEP-FPDTPDQGVMAL 84 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 MLP + +G G + E R++ R +R ++D++ L G++ + Sbjct: 85 NIEMLPMAFPT-----FEAGPPGEEAIEYSRVVDRGIRESKMIDVTRLVIEPGTKVWMVF 139 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK-FQLSQVLKGHVAAISCGMLCGY 172 ID D+I G A+ A AL + + + F+L + + +++ + Sbjct: 140 IDIDIINYAGNIIDASTIAAVAALRNAIVPASRIGGEDFKLP--VNANPVSVTMAKIGDE 197 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203 ++D D E+ + M + HI +Q Sbjct: 198 LVIDPDLEEEQVSNGRITITMAEDDHIHAIQ 228 >gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator] Length = 271 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 7/143 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59 +R+ GR+ ++R+I + V A+GS ++ G+T +L + I +NT + Sbjct: 13 LRVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPRNNIAKNTTKAIV 72 Query: 60 TAEYGM--LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y M ++G R +R R +SQE + A+ +++ L QI I + Sbjct: 73 NCQYSMAVFSFTSGERKRRP----RGDWKSQERSIQLRHAMEAIIHLELYPRSQIDIFVE 128 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 ++Q DG A++ A +AL D Sbjct: 129 ILQVDGSDYCASVNAATLALIDA 151 >gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi] gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia malayi] Length = 249 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 36/228 (15%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT--ATLEEKVPMWIRNTKHGW 58 R GR+ +Q+R ++ V A+GS ++ G+T +L E K + + Sbjct: 9 FRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDR-CI 67 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I +Y M ST R +R R RS E R++ +A + QI + C++ Sbjct: 68 INCQYSMATFSTNERKERP----RGDRRSLEFARLMEKAFEEAILTENYPRSQIDVFCEL 123 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDL 177 +QADG A + +AL D M +G VAA SC G VD+ Sbjct: 124 LQADGSHLAACVNVGTLALADAGVPM-------------RGLVAAASCACAPGGLACVDV 170 Query: 178 DYGED---------STIDVDANFVMTD------SGHIVEVQGSAERAT 210 + E+ +TI VM + H++ + G+A +AT Sbjct: 171 NSREEMGIVPRLTVATISGQDAVVMAELQNRLHKNHLMVILGNARKAT 218 >gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex exonuclease RRP41-like [Pongo abelii] Length = 343 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 35/250 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 111 RVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVY----GPHEIRGSRARALPD 166 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R R G R S E+ + + + + L+ L R QI Sbjct: 167 RALVNCQYSSATFSTGERKRR-----RHGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 220 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + G Sbjct: 221 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 267 Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + DL + E++ A ++ SG I ++ A +DH +L A D+ Sbjct: 268 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHT 324 Query: 233 LQKDVISNEV 242 L V+ V Sbjct: 325 LLDRVVRQHV 334 >gi|241663489|ref|YP_002981849.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii 12D] gi|240865516|gb|ACS63177.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12D] Length = 724 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D LK HVA ++ G++ Sbjct: 433 ITESNGSSSMASVCGGSLALMDA-------------GVPLKAHVAGVAMGLILEDNKFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 480 LTDILGDEDHLGDMDFKVAGTDAG 503 >gi|309781847|ref|ZP_07676580.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA] gi|308919488|gb|EFP65152.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA] Length = 722 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D LK HVA ++ G++ Sbjct: 431 ITESNGSSSMASVCGGSLALMDA-------------GVPLKAHVAGVAMGLILEDNKFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 478 LTDILGDEDHLGDMDFKVAGTDAG 501 >gi|218670439|ref|ZP_03520110.1| ribonuclease PH [Rhizobium etli GR56] Length = 61 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 28/39 (71%) Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204 CG+ ++DLDY EDS+ + DANFVMT +G IVE++ Sbjct: 9 CGVFASQAVIDLDYLEDSSAETDANFVMTGAGGIVEIRA 47 >gi|194215186|ref|XP_001917049.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA-processing protein 41) (Exosome component 4) (p12A) [Equus caballus] Length = 245 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 35/250 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + + + + L+ L R QI Sbjct: 69 RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + G Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTA 169 Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + DL + E++ A ++ SG I ++ A +DH +L A D+ Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHT 226 Query: 233 LQKDVISNEV 242 L V+ V Sbjct: 227 LLDRVVRQHV 236 >gi|52548824|gb|AAU82673.1| 3'-5' exoribonuclease [uncultured archaeon GZfos19A5] Length = 257 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 14/144 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R+IS+ R V K AEGS VK GDT +L +E P + G I Sbjct: 23 REDGRGFREYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ K E SG S ++ R++ R +R +DL L G + + Sbjct: 82 NAELVPLAS---PKFE--SGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVAL 137 ID V+ +G AA GA +L Sbjct: 137 IDIHVLDDNGNLVDAAALGAITSL 160 >gi|123169759|sp|Q14LB9|PNP_SPICI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110005388|emb|CAK99711.1| 3' exoribonuclease transmembrane protein [Spiroplasma citri] Length = 702 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A GS LV++GDT +L TAT+ K+ P+ + + + G +P G Sbjct: 21 QLAKQASGSVLVRYGDTVVLVTATVNNKLSEVDFFPLTVVFQEKLY---SVGKIP---GG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE G S R+I RALR + + QI+I+ + D R ++ Sbjct: 75 FLKREGKPSEYGTLS---ARVIDRALRPLFSENFRNEVQIVINVLAVDNDNDVRMVSLFA 131 Query: 133 AWVAL 137 A +AL Sbjct: 132 ASLAL 136 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 20/146 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ +Q+R +S + GS L G+T +L+ TL E ++ I + + Sbjct: 320 RLDGRKLDQIRPLSSEIDILPVVHGSALFTRGETQVLSVVTLGALGENQIIDGITDEESK 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR-ALRSVVDLSALGSRQII--- 113 Y S G +GR G S +R IG AL V L + S ++ Sbjct: 380 RFMHHYNFPAFSVGE-------TGRMGPPS---RREIGHGALGEKVLLQIIPSEKVFPYT 429 Query: 114 --IDCDVIQADGGTRTAAITGAWVAL 137 I +V++++G T A+I A +AL Sbjct: 430 IRIVSEVLESNGSTSQASICAATLAL 455 >gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei] Length = 252 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 16/181 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR++N+ R ++L +G C V G +H+ T +V + + K+ +T Sbjct: 13 LRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRL-DGKYNEVT 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ + +RE R S++I + RSVV LS + QI I +V++ Sbjct: 72 ITCDVVVAAFAGERRRE--QQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLK 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG + A I A +AL D M D V + G++ G+ +VDL Sbjct: 130 QDGSDKAACINAACLALIDASIAMRDV-------------VYTQTVGLIEGFDVVDLTTE 176 Query: 181 E 181 E Sbjct: 177 E 177 >gi|40217447|emb|CAE46380.1| 3'-5' exoribonuclease [uncultured archaeon] gi|268323830|emb|CBH37418.1| 3'-5' exoribonuclase [uncultured archaeon] Length = 260 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 14/213 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R+I + R + K AEGS V+ GDT +L +E P + G + Sbjct: 23 RADGRGFLDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGEP-FPDTPNKGILMT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ E SG G S E+ R++ R +R +DL L G + I Sbjct: 82 NAELVPLAS-----PEFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID + DG AA GA ++L + E + + ++ A++ + G Sbjct: 137 IDIHTLDNDGNLVDAAALGAIMSLLNVAIPYEQYGLTGEDTLQIRDTPVAVTVVEIRGNL 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206 +VD + E+S + G I +Q S Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSG 229 >gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens] gi|109087712|ref|XP_001089090.1| PREDICTED: exosome complex exonuclease RRP41 [Macaca mulatta] gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 [Pan troglodytes] gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex exonuclease RRP41-like [Nomascus leucogenys] gi|14285756|sp|Q9NPD3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName: Full=Exosome component 4; AltName: Full=Ribosomal RNA-processing protein 41; AltName: Full=p12A gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens] gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens] gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens] gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens] gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct] gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct] Length = 245 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 35/250 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + + + + L+ L R QI Sbjct: 69 RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + G Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169 Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + DL + E++ A ++ SG I ++ A +DH +L A D+ Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHT 226 Query: 233 LQKDVISNEV 242 L V+ V Sbjct: 227 LLDRVVRQHV 236 >gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative [Tribolium castaneum] Length = 249 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 102/247 (41%), Gaps = 28/247 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R I V +GS ++ G T +L +V + Sbjct: 13 LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVGFAKAQHDSAVVN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ M STG R KR R +S EI + +AL + + + QI + +V+ Sbjct: 73 CQFSMAVFSTGERKKRP----RGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLH 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179 ADGG A + A +AL D LK +V A + + P++D+ + Sbjct: 129 ADGGIYPACVNAATLALIDA-------------GIPLKEYVCACTASLANNDVPLLDVSH 175 Query: 180 GED----STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 E+ T+ V A + SG IV ++ S F DH +L+ A D+ + Sbjct: 176 QEEIIGGPTLTVAA---LPMSGKIVLMEMSQR---FHVDHLQKVLDKALQGCKDIKSILD 229 Query: 236 DVISNEV 242 + + + + Sbjct: 230 EAVKSHI 236 >gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis] gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis] Length = 249 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 35/204 (17%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + I Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLVIN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +SQE + + +AL + + QI I +V+Q Sbjct: 73 CQYSQATFSTSERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG ++ A +AL D C N+F V A + + Sbjct: 129 ADGANYAVSLNAATLALIDA----GICLNEF---------VVACTASL------------ 163 Query: 181 EDSTIDVDANFVMTDSGHIVEVQG 204 +AN +TD HI EV G Sbjct: 164 ------SNANIPLTDISHIEEVSG 181 >gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi] gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi] Length = 249 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 4/139 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + I Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKAKKSEGNDLIIN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +SQE + + +AL + + QI I +V+Q Sbjct: 73 CQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHD 139 ADG ++ A +AL D Sbjct: 129 ADGANYAVSLNAATLALID 147 >gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500] Length = 248 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 19/224 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +R+ GR+ N++R +++ + A+GS + G+T + +V R + Sbjct: 12 LRIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQRMLHDRAIV 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY S+ K S +Q S EI +I +A S + ++ QI I V+ Sbjct: 72 NCEYSQAAFSSATDRKPTRKSDKQ---SYEIASLIKQAFESTIQITLFPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG + AA+ A +A+ D M D + A S + G P++D++ Sbjct: 129 QADGGLKAAALNAATLAVIDAGLPMRD-------------FICACSATFIEGVPLLDMNQ 175 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 E+ + A+ +++ + V + QD F ++L LA Sbjct: 176 MEERS--GGADLLLSIQPQLGGVISLNMESKVPQDMFESVLELA 217 >gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 249 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 35/250 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 17 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 72 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + + + + L+ L R QI Sbjct: 73 RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 126 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + G Sbjct: 127 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 173 Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + DL + E++ A ++ SG I ++ A +DH +L A D+ Sbjct: 174 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHT 230 Query: 233 LQKDVISNEV 242 L V+ V Sbjct: 231 LLDRVVRQHV 240 >gi|317129156|ref|YP_004095438.1| polyribonucleotide nucleotidyltransferase [Bacillus cellulosilyticus DSM 2522] gi|315474104|gb|ADU30707.1| polyribonucleotide nucleotidyltransferase [Bacillus cellulosilyticus DSM 2522] Length = 697 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 25/225 (11%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++K A G+ LV++GDT +L+TAT ++ +P + + G +P G +K Sbjct: 23 QLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP---GGFIK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR + R+I R +R + Q+I D AA+ G+ + Sbjct: 80 RE---GRPSDHAVLTSRLIDRPIRPMFPDGFRNDVQVISIVMSNDQDAPAEMAAMIGSSL 136 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL + D G +A ++ G + G I++ + T D++ V + Sbjct: 137 AL-----SVSDIP--------FSGPIAGVTIGRIDGEFIINPTPQQLETSDIEL-VVAGN 182 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 I V+ AE ++ L D I +I Q+D++S Sbjct: 183 KDAINMVEAGAEEV--PEETILEALMYGHDEIKRIIAFQEDIVSK 225 >gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927] gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei] Length = 252 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 16/181 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N+ R ++L +G C V G +H+ T +V + K+ +T Sbjct: 13 LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLEG-KYNEVT 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ + +RE R S++I + RSVV LS + QI I +V++ Sbjct: 72 ITCDVVVAAFAGERRRE--QQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLK 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG + A I A +AL D M+D V + G++ G+ +VDL Sbjct: 130 QDGSDKAACINAACLALIDASIAMKDV-------------VYTQTVGLIEGFDVVDLTTE 176 Query: 181 E 181 E Sbjct: 177 E 177 >gi|134299798|ref|YP_001113294.1| polynucleotide phosphorylase/polyadenylase [Desulfotomaculum reducens MI-1] gi|187610295|sp|A4J5W6|PNP_DESRM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134052498|gb|ABO50469.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum reducens MI-1] Length = 740 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 27/148 (18%) Query: 8 ENQ--MREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57 ENQ +REISL T R++K A G+ LV +G+T +L TAT+ + R+ Sbjct: 3 ENQVLIREISLGGRTLTLETGRMAKQASGAVLVTYGETVVLVTATVAKNT----RDIDFF 58 Query: 58 WITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110 +T +Y G +P G +KRE GR ++ R+I R +R + Sbjct: 59 PLTVDYEERLYAVGKIP---GGFIKRE---GRPSEKAILSGRLIDRPIRPLFPKHMRNEV 112 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALH 138 Q++ + D AA+ GA ALH Sbjct: 113 QVVATVMSVDQDNAPEIAAMIGASAALH 140 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 8/143 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +++R IS+ V G+ L G T +L+ ATL EE++ + + Sbjct: 324 LRIDGRAIDEIRPISVEVGVLPRTHGTGLFTRGQTQILSVATLGSISEEQILDGLGVEES 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + R+ G + RAL ++ + I + Sbjct: 384 KRYMHHYNFPPFSTGETKPMRSPGRREIGHGA----LAERALEPMIPPEEVFPYTIRVVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHD 139 + I+++G T ++ G+ ++L D Sbjct: 440 EAIESNGSTSMGSVCGSTLSLMD 462 >gi|169841859|ref|ZP_02874968.1| ribonuclease PH [candidate division TM7 single-cell isolate TM7a] Length = 36 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 27/32 (84%) Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMED 146 DCDVIQADGGTRTA+ITGA++AL ++ + D Sbjct: 1 DCDVIQADGGTRTASITGAYLALELAVEKLID 32 >gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus] Length = 245 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 35/250 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSRALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + + + + L+ L R QI Sbjct: 69 RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + G Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTA 169 Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + DL + E++ A ++ SG I ++ + +DH +L A D+ Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARDVHT 226 Query: 233 LQKDVISNEV 242 L V+ V Sbjct: 227 LLDRVVRQHV 236 >gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni] gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni] Length = 251 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 9/149 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--W 58 +RL GR+ +++R I V + +GS ++ G+T +L + ++++ Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKNKSSESNDVI 72 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I +Y ST R R R +SQE + + +AL + + QI + +V Sbjct: 73 INCQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEV 128 Query: 119 IQADGGTRTAAITGAWVALHD---CLQHM 144 +QADG A+ A +AL D CL Sbjct: 129 LQADGANYAVALNAATLALIDAGICLNEF 157 >gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] gi|254040461|gb|ACT57257.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] Length = 699 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 8/144 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R+IS + + GS L GDT + TL +E+ + T+ Sbjct: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y LP +TG + A S R+ G R+ RA+ V+ +A + I Sbjct: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 ++ ++DG + A + G+ +AL D Sbjct: 428 EITESDGSSSMATVCGSSLALMDA 451 >gi|126322962|ref|XP_001364428.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 [Monodelphis domestica] Length = 245 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 33/249 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P +R ++ Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEMRGSRSRALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ-EIQRMIGRALRSVVDLSALGSRQIII 114 + +Y M STG R +R G R E+ + + + + QI I Sbjct: 69 RALVNCQYSMATFSTGERKRRP-----HGDRKACEMGLQLRQTFEAAILTQLYPRSQIDI 123 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 V+QADGG A + A +A+ D M D V A S G + G + Sbjct: 124 YVQVLQADGGNYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTAL 170 Query: 175 VDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 DL + E++ A ++ SG + ++ A +DH +L +A D+ L Sbjct: 171 ADLSHVEEAAGGPQLALALLPASGQLALLEMDAR---LHEDHLQQVLEVASQAARDVHAL 227 Query: 234 QKDVISNEV 242 V+ V Sbjct: 228 LDRVVRQHV 236 >gi|323701874|ref|ZP_08113544.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum nigrificans DSM 574] gi|323533178|gb|EGB23047.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum nigrificans DSM 574] Length = 738 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 25/143 (17%) Query: 11 MREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62 +RE+SL T R++K A G+ LV +GDT +L TAT+ + R+ +T + Sbjct: 8 IREMSLGGRKLTLETGRLAKQASGAVLVTYGDTMVLVTATVAKNT----RDIDFFPLTVD 63 Query: 63 Y-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y G +P G +KRE GR ++ R+I R +R + Q++ Sbjct: 64 YEERLYAVGKIP---GGFIKRE---GRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVAT 117 Query: 116 CDVIQADGGTRTAAITGAWVALH 138 + D AA+ GA ALH Sbjct: 118 VLSVDQDNAPEIAAMIGASAALH 140 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKV--PMWIRNT 54 +R+ GR +++R IS+ V GS L G T +LT ATL +E++ + + T Sbjct: 324 LRIDGRAIDEVRPISVEVGVLARTHGSGLFTRGQTQILTVATLGCVSDEQILDGLGLEET 383 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 K Y P STG + R+ G + RAL ++ + + + Sbjct: 384 KR--YMHHYNFPPFSTGETKPMRSPGRREIGHGA----LAERALEPMIPPEEVFPYTLRV 437 Query: 115 DCDVIQADGGTRTAAITGAWVALHD 139 + ++++G T ++ G+ +AL D Sbjct: 438 VSEALESNGSTSMGSVCGSTLALMD 462 >gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex exonuclease RRP41-like [Callithrix jacchus] Length = 245 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 35/250 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + + + + L+ L R QI Sbjct: 69 RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + G Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169 Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + DL + E++ A ++ SG I ++ A +DH +L A D+ Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAAQDVHI 226 Query: 233 LQKDVISNEV 242 L V+ V Sbjct: 227 LLDRVVRQHV 236 >gi|222151113|ref|YP_002560267.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus JCSC5402] gi|254782726|sp|B9EBG0|PNP_MACCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222120236|dbj|BAH17571.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus JCSC5402] Length = 703 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 39/232 (16%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRST 70 T +++K A G+ LV++GDT +L+TAT ++ P+ + N + A G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATASKEPRDVDFFPLMV-NYEEKLYAA--GKIP--- 74 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR G + R+I R +R + Q+I + D AA+ Sbjct: 75 GGFNKRE---GRPGEDATLTSRLIDRPIRPLFPKGYRHDVQVISIVMSVDPDNSPEMAAM 131 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDSTID-- 186 G+ +AL + D +G +A ++ G++ G I++ D E S +D Sbjct: 132 IGSSMAL-----AVSDIP--------FEGPIAGVNVGLVDGELIINPDVQQREVSVLDLQ 178 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 V +F D+ ++VE G+ E A +D + I L++ Q+ +I Sbjct: 179 VAGHF---DAVNMVEA-GAKEVA---EDKMLEAIMFGHAEIKKLVEFQQSII 223 >gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura] gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis] gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura] gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis] Length = 249 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 8/151 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + T I Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGMKTETNDVIIN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y +T R R R +S E + + +AL + + QI I +V+Q Sbjct: 73 CQYSQATFATAERKNRP----RGDRKSLEFKMYLEQALSAAIKSELYPRSQIDIYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151 ADG A+ A +AL D C N+F Sbjct: 129 ADGANYAVALNAATLALIDA----GICLNEF 155 >gi|56963987|ref|YP_175718.1| polynucleotide phosphorylase/polyadenylase [Bacillus clausii KSM-K16] gi|81366005|sp|Q5WFU8|PNP_BACSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56910230|dbj|BAD64757.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii KSM-K16] Length = 710 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 27/224 (12%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++K A G+ LV++GDT +L+TAT ++ +P + + G +P G +K Sbjct: 23 QLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP---GGFIK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR R+ R+I R +R + Q+I D AA+ G+ + Sbjct: 80 RE---GRPSERAILTSRLIDRPIRPLFPDGFRNDVQVISIVMSSDQDASPEMAAMIGSSL 136 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL C+ + +G +A ++ G + G I++ + + D+D T Sbjct: 137 AL--CVSDIP-----------FEGPIAGVTVGRINGEFIMNPTPAQLAESDIDLTVAGTK 183 Query: 196 SG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ++VE G+ E +D + + I +I Q+ V+ Sbjct: 184 EAINMVEA-GAKE---VPEDVMLEAILAGHENIKKMIAFQEKVV 223 >gi|154497054|ref|ZP_02035750.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC 29799] gi|150273453|gb|EDN00581.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC 29799] Length = 716 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNTK 55 R+ GR +N++R +S V GS L G T +L+ ATL ++ +W K Sbjct: 322 RVDGRAKNEIRPLSAEVGVLPKVHGSGLFTRGQTQVLSVATLNTLAASQKLDTIWEEEEK 381 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G + + R+ G +R + L SV + I + Sbjct: 382 R--YMHHYNFPPYSVGEAKAPRSTNRREYGHGALAERALVPVLPSVDEF----PYAIRVV 435 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V+ ++G T +I G+ +AL D +K VA ISCG++ Sbjct: 436 SEVLSSNGSTSQGSICGSTLALMDA-------------GVPIKAPVAGISCGLI 476 >gi|124026371|ref|YP_001015487.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. NATL1A] gi|187610310|sp|A2C412|PNP_PROM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123961439|gb|ABM76222.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. NATL1A] Length = 722 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 32/234 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS +++ GDT +L TAT + +P+ + + Sbjct: 13 REIKLTTGRFAPQAGGSVMIECGDTSVLVTATKSSGREGVDFLPLMCDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGSFMRRE---GRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+TGA +A +G +AA+ G+L +++ Y E Sbjct: 124 ADVLAVTGASMA-------------TLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+D T G +V V+ A + S+ ++ + I +LI QK+V+ Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LSEQDVIEAIDFGYEAITELINAQKEVL 221 >gi|72382649|ref|YP_292004.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. NATL2A] gi|123620931|sp|Q46JM7|PNP_PROMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|72002499|gb|AAZ58301.1| RNA binding S1:KH [Prochlorococcus marinus str. NATL2A] Length = 722 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 32/234 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS +++ GDT +L TAT + +P+ + + Sbjct: 13 REIKLTTGRFAPQAGGSVMIECGDTSVLVTATKSSGREGVDFLPLMCDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGSFMRRE---GRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+TGA +A +G +AA+ G+L +++ Y E Sbjct: 124 ADVLAVTGASMA-------------TLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+D T G +V V+ A + S+ ++ + I +LI QK+V+ Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LSEQDVIEAIDFGYEAITELINAQKEVL 221 >gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972] Length = 252 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 16/181 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N+ R ++L +G C V G +H+ T +V + + K+ +T Sbjct: 13 LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRL-DGKYNEVT 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ + +RE R S++I + RSVV LS + QI I +V++ Sbjct: 72 ITCDVVVAAFAGERRRE--QQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLK 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG + A I A +AL D M D V + G++ G+ +VDL Sbjct: 130 QDGSDKAACINAACLALIDASIAMRDV-------------VYTQTVGLIEGFDVVDLTTE 176 Query: 181 E 181 E Sbjct: 177 E 177 >gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens] gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens] Length = 243 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 9/152 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--W 58 +R+ GR+ ++R + V A+GS ++ G+T L + + + KH Sbjct: 9 LRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASINGPHQAGDKAK-IKHDRVH 67 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I +Y M ST R R + RS +I +++ +S + QI I + Sbjct: 68 INFQYSMATFSTNERRNRP----KGDKRSIDISQLMREIFQSAILTDLYPKSQIDIHVQI 123 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED--CS 148 +QADGG +A I A +AL D M+D CS Sbjct: 124 LQADGGNYSACINAATLALMDAGVPMKDFICS 155 >gi|300703637|ref|YP_003745239.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum CFBP2957] gi|299071300|emb|CBJ42618.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum CFBP2957] Length = 720 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + I + Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 474 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTDNG 501 >gi|146104020|ref|XP_001469709.1| exosome complex exonuclease RRP41 [Leishmania infantum] gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum JPCM5] Length = 246 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 7/148 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58 +RL GR+ + R + + +GSC + G + + + + + KH G Sbjct: 13 LRLDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKV-CACVFGPRESLHKQEAKHDKGL 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +T E + + NR + R+ S++I + + RSV+ LS + QI I +V Sbjct: 72 VTCEVAVAAFAGENRRNPQ----RRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED 146 +Q DG + A + A +AL D M D Sbjct: 128 LQKDGNEKIACVNAACLALIDANVAMRD 155 >gi|91772268|ref|YP_564960.1| exosome complex RNA-binding protein Rrp42 [Methanococcoides burtonii DSM 6242] gi|91711283|gb|ABE51210.1| Archaeal exosome complex exoribonuclease [Methanococcoides burtonii DSM 6242] Length = 259 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 15/224 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++ R++ + V AEGS V GDT +L L+ P + + G I Sbjct: 22 REDGRGFDETRDLIIETNVIDKAEGSAKVLLGDTQVLVGVKLQVGSP-FADSADKGVIIT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 + P ++ N EA R+ ++ E+ R++ R +R +DL+ L + + Sbjct: 81 SMELNPIASPN---FEAGPPRE--KAIEMARVVDRGIRESGAIDLNKLCITEGEEVWIVF 135 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ G AA GA AL E + ++ ++S + G Sbjct: 136 IDVHVLNDSGNLLDAASLGAIAALMTATIPGEREGRGEDVKLPIREMPVSLSFIDIGGEL 195 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217 ++D E+S D+ V G I +Q S T S+++F Sbjct: 196 VIDATNNEESVSDLRLTIVTNQDGSICAMQKSGP-GTLSEENFL 238 >gi|83746292|ref|ZP_00943345.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum UW551] gi|83727042|gb|EAP74167.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum UW551] Length = 720 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + I + Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 474 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTDNG 501 >gi|17546786|ref|NP_520188.1| polynucleotide phosphorylase/polyadenylase [Ralstonia solanacearum GMI1000] gi|81504298|sp|Q8XXP6|PNP_RALSO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|17429086|emb|CAD15774.1| probable polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum GMI1000] Length = 717 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + I + Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKEDEFAYTIRL 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 474 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTDNG 501 >gi|299066328|emb|CBJ37512.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum CMR15] Length = 717 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + I + Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 474 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTDNG 501 >gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus] Length = 271 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 31/191 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 39 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSRALPD 94 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + + + + L+ L R QI Sbjct: 95 RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 148 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + G Sbjct: 149 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTA 195 Query: 174 IVDLDYGEDST 184 + DL + E++ Sbjct: 196 LADLSHVEEAA 206 >gi|206901853|ref|YP_002250868.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus thermophilum H-6-12] gi|254782719|sp|B5YEB0|PNP_DICT6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206740956|gb|ACI20014.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus thermophilum H-6-12] Length = 693 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 24/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGW 58 R+ GR+ N++R +S V K GS L + G+T +L+ TL EE++ + ++ Sbjct: 315 RVDGRKLNEIRPVSCEVGVLKRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIIIDC 116 Y P S G EA R G + +EI + RAL ++ I + Sbjct: 375 YIHHYNFPPFSVG-----EAKPLR-GPKRREIGHGALAERALLPLIPKEEEFPYTIRVVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V+ ++G T A++ G+ ++L D +K HVA ++ G++ Sbjct: 429 EVLSSNGSTSMASVCGSSLSLMDA-------------GVPIKTHVAGVAMGLI 468 >gi|212223176|ref|YP_002306412.1| exosome complex RNA-binding protein Rrp42 [Thermococcus onnurineus NA1] gi|226740342|sp|B6YSE7|ECX2_THEON RecName: Full=Probable exosome complex exonuclease 2 gi|212008133|gb|ACJ15515.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1] Length = 272 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 25/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR R++ + V + AEGS VK G+T +L ++ P + + G IT Sbjct: 24 RVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIKVDMGEP-FPDLPEKGVITT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQII 113 ++P ++ + G R+ E+ R++ R +R V+L L R + Sbjct: 83 NVELVPLASPS-----FEPGPPDERAIELARVVDRGIRESGAVELEKLVIVPGKLVRVVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVAL---------HDCLQHMEDCSNKFQLSQVLKGHVAAI 164 ID V+ DG A+ GA AL +D ++++ V K + + Sbjct: 138 IDVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEVQILDEYEPLPVSKMPI-PV 196 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + + G +VD + E+ +D ++G I VQ S E +F + ++LA Sbjct: 197 TIAKVGGNLLVDPNLDEELVMDGRITITTDENGMISSVQKS-EGGSFKLEEVMYAIDLAL 255 Query: 225 DRIADL 230 + A++ Sbjct: 256 TKAAEI 261 >gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa] gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa] Length = 247 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 21/187 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT--ATLEEKVPMWIRNTKHGWI 59 R GR+ Q+R ++ V A+GS ++ G+T +L E K + + I Sbjct: 10 RQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDR-CII 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M ST R +R R RS E R++ +A + V QI + C+++ Sbjct: 69 NCQYSMATFSTNERKERP----RGDRRSLEFARLMEKAFEAAVLTENYPRSQIDVFCELL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLD 178 QADG A + +AL D M +G VAA SC G VD++ Sbjct: 125 QADGSHLAACVNVGTLALADAGVPM-------------RGLVAAASCACAPNGVACVDVN 171 Query: 179 YGEDSTI 185 E+ I Sbjct: 172 SREEMGI 178 >gi|300691020|ref|YP_003752015.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum PSI07] gi|299078080|emb|CBJ50723.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum PSI07] Length = 722 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALSGEYRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + I + Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKEDEFAYTIRL 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 474 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTDNG 501 >gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM 3638] gi|29336823|sp|Q8U0M0|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2 gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638] Length = 277 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 88/222 (39%), Gaps = 26/222 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHGWI 59 R+ R R I + V + AEGS LVK G+T +L ATL E P G + Sbjct: 24 RIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPFP---DTPNMGVM 80 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS------ALGS--RQ 111 T ++P ++ G R+ E+ R+I R +R L+ A G R Sbjct: 81 TTNVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGKIVRV 135 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGHVAAISCG 167 + ID V+ DG A GA AL + + + E+ L + V I Sbjct: 136 VFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEILEEKEPLPVEKIPIS 195 Query: 168 M----LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205 + + Y +VD E+ +D ++GHI VQ S Sbjct: 196 VTFAKIGNYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKS 237 >gi|150389523|ref|YP_001319572.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470926|sp|A6TNZ5|PNP3_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 3; AltName: Full=Polynucleotide phosphorylase 3; Short=PNPase 3 gi|149949385|gb|ABR47913.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 702 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 35/245 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56 M+L GR + EI +V++ A+GSC++K+GDT +L TA +E + + + + Sbjct: 7 MKLGGRP--FVVEIG---KVAELAQGSCMIKYGDTTVLVTACASKEPKEGLDFFPLSCDY 61 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 G +P G +KRE+ R ++ R+I R +R + Q+I Sbjct: 62 EEKLYAVGKIP---GGFIKRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATV 115 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 + D +A+ G+ +AL SN G A++S GM+ G IV+ Sbjct: 116 LSMDQDCPPDISAMIGSSIAL--------SVSN-----IPFMGPTASVSVGMIDGEYIVN 162 Query: 177 L--DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDST+++ V I+ ++ A T +Q + A + I ++ Sbjct: 163 PTSKQKEDSTLEL---IVSGTKNAIMMIEAGANELTEAQ--ILDAIMFAHEEIKKIVAFI 217 Query: 235 KDVIS 239 ++++S Sbjct: 218 ENIVS 222 >gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus] gi|21759405|sp|Q921I9|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName: Full=Exosome component 4; AltName: Full=Ribosomal RNA-processing protein 41 gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus] gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus] gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus] gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus] Length = 245 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 31/191 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSRALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + + + + L+ L R QI Sbjct: 69 RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + G Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTA 169 Query: 174 IVDLDYGEDST 184 + DL + E++ Sbjct: 170 LADLSHVEEAA 180 >gi|157877098|ref|XP_001686881.1| exosome complex exonuclease RRP41 [Leishmania major strain Friedlin] gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain Friedlin] Length = 246 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 20/183 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58 +RL GR+ + R + + +GSC + G + + + + + KH G Sbjct: 13 LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKV-CACVFGPRESLHKQEAKHDKGL 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +T E + + NR + R+ S++I + + RSV+ LS + QI I +V Sbjct: 72 VTCEVAVAAFAGENRRNPQ----RRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DG + A + A +AL D M D V I G+L + ++DL Sbjct: 128 LQQDGNEKIACVNAACLALIDANVAMRD-------------AVCCIDAGILDEHMLIDLT 174 Query: 179 YGE 181 E Sbjct: 175 SNE 177 >gi|116748674|ref|YP_845361.1| polynucleotide phosphorylase/polyadenylase [Syntrophobacter fumaroxidans MPOB] gi|187611325|sp|A0LHM4|PNP_SYNFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116697738|gb|ABK16926.1| Polyribonucleotide nucleotidyltransferase [Syntrophobacter fumaroxidans MPOB] Length = 699 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 47/244 (19%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++ A GS L+++GDT +L AT E++ VP+ + + + R G Sbjct: 21 IARQAGGSVLMRYGDTVVLIAATKEDRIREGIDFVPLMVDYQEMSYAAG------RIPGG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +RE GR + R+I R +R + Q++ + + A+TG Sbjct: 75 FFRREI--GRPSEKETLTSRLIDRPIRPLFPKKYCYETQVVATVLSVDMENEPDVVALTG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191 A ALH +S V +G VAA+ G + G ++ E ++ D N Sbjct: 133 ASTALH--------------ISPVPFQGPVAAVRVGRINGSFAINPSAKE--LLESDLNV 176 Query: 192 VMTDS-GHIVEVQGSAERAT---------FSQDHFFAMLNLAKD----RIADLIKLQKDV 237 V+ S +V V+G A+ + F +L+ A+D RIA + + +V Sbjct: 177 VVAGSRDAVVMVEGGADFVSEDDLVDAIDFGHKAILPILD-AQDELQRRIAPVKEAPPEV 235 Query: 238 ISNE 241 + NE Sbjct: 236 VRNE 239 >gi|157413740|ref|YP_001484606.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9215] gi|187610311|sp|A8G5Y9|PNP_PROM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157388315|gb|ABV51020.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 721 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 34/237 (14%) Query: 12 REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 REI LT + + A GS +++ GDT LL TAT K +P+ + + Sbjct: 13 REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTTKKEASDFLPLICDYEEKLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPTWMRDEIQIVASCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A L ++ G +AA+ G++ I++ Y E Sbjct: 124 ADVLAVTGASIAT--------------LLGEIPFYGPMAAVRVGLIGDDFILNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + + +LIK Q+D++ + Sbjct: 170 KGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLKD 223 >gi|52548653|gb|AAU82502.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos18B6] Length = 238 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 14/204 (6%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R+I + R + K AEGS V+ GDT +L +E P + G + ++P ++ Sbjct: 10 FRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGAP-FPDTPNKGVLMTNAELVPLAS 68 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QIIIDCDVIQAD 122 E SG G S E+ R++ R +R +DL L G + I ID + D Sbjct: 69 -----PEFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIFIDIHTLDND 123 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 G AA GA ++L + E + + ++ A++ + G +VD + E+ Sbjct: 124 GNLVDAAALGAIMSLLNVTIPYEQYGLTGEDTLQIRDTPVAVTVVEIGGNLLVDPNVYEE 183 Query: 183 STIDVDANFVMTDSGHIVEVQGSA 206 S + G I +Q S Sbjct: 184 SAATSKLTVISNADGSISGLQKSG 207 >gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis] gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis] Length = 249 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 4/139 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + I Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLIIN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +SQE + + +AL + + QI I +V+Q Sbjct: 73 CQYSQATFSTSERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHD 139 ADG ++ A +AL D Sbjct: 129 ADGANYAVSLNAATLALID 147 >gi|188996726|ref|YP_001930977.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp. YO3AOP1] gi|254782742|sp|B2V900|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp. YO3AOP1] Length = 703 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 22/174 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+ ++R I + V GS + G T T TL I + T Sbjct: 311 IRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGET 370 Query: 61 AE-----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P STG VS R+ G + RAL ++ I + Sbjct: 371 LKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGN----LAERALEPLIPSEEEFPYVIRVV 426 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+++++G T A + G +AL D M K HVA I+ G++ Sbjct: 427 SDILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLI 467 >gi|194333349|ref|YP_002015209.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris aestuarii DSM 271] gi|257096703|sp|B4S5G5|PNP_PROA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|194311167|gb|ACF45562.1| Polyribonucleotide nucleotidyltransferase [Prosthecochloris aestuarii DSM 271] Length = 734 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 20/148 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ +++R IS+ + A GS L G+T L T TL K + +T Sbjct: 334 RLDGRRLDEVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQMIDTLTDDADK 393 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P S G +GR GG S +R IG RA+R V + Sbjct: 394 RFMLHYNFPPFSVGE-------TGRVGGTS---RREIGHGNLAERAIRKVAPAESAFPYT 443 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHD 139 I I D+++++G + A++ G +A D Sbjct: 444 IRIVSDILESNGSSSMASVCGGALAAMD 471 >gi|322503669|emb|CBZ38755.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 246 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 7/148 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58 +RL GR+ + R + + +GSC + G + + + + + KH G Sbjct: 13 LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKV-CACVFGPRESLHKQEAKHDKGL 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +T E + + NR + R+ S++I + + RSV+ LS + QI I +V Sbjct: 72 VTCEVAVAAFAGENRRNPQ----RRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED 146 +Q DG + A + A +AL D M D Sbjct: 128 LQKDGNEKIACVNAACLALIDANVAMRD 155 >gi|91069865|gb|ABE10796.1| polyribonucleotide nucleotidyltransferase [uncultured Prochlorococcus marinus clone ASNC1363] Length = 721 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 34/237 (14%) Query: 12 REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 REI LT + + A GS +++ GDT LL TAT K +P+ + + Sbjct: 13 REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTLKKETSDFLPLICDYEEKLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G ++RE GR R+ I R+I R +R + + QI+ C + Sbjct: 70 ---RIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPVWMRDEIQIVASCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A L ++ G +AA+ G++ I++ Y E Sbjct: 124 ADVLAVTGASIAT--------------LLGEIPFYGPMAAVRVGLIGDDFILNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + + +LIK Q+D++ + Sbjct: 170 KGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLKD 223 >gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta] gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta] Length = 246 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 11/141 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58 +RL GR+ +++R I V + +GS ++ G+T +L + +KH Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQA-----KSKHTESI 67 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I +Y ST R R R +S E + + +AL + + QI I +V Sbjct: 68 INCQYSQATFSTAERKYRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEV 123 Query: 119 IQADGGTRTAAITGAWVALHD 139 +QADG A+ A +AL D Sbjct: 124 LQADGANYAVALNAATLALID 144 >gi|126696730|ref|YP_001091616.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9301] gi|187610309|sp|A3PE40|PNP_PROM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|126543773|gb|ABO18015.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 721 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 34/237 (14%) Query: 12 REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 REI LT + + A GS +++ GDT LL TAT K +P+ + + Sbjct: 13 REIRLTTGLYAPQANGSVMIECGDTSLLVTATKTTKKEVSDFLPLICDYEEKLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A L ++ G +AA+ G++ I++ Y E Sbjct: 124 ADILAVTGASIATL--------------LGEIPFYGPMAAVRVGLIGDDFILNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + +++LIK Q+D++ + Sbjct: 170 KGDLDIVVAGSKEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVSELIKSQEDLLKD 223 >gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum] Length = 251 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 30/249 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58 +R GR+ +++R I V +GS ++ G T +L +V +H Sbjct: 13 LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSAV 72 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + ++ M STG R KR R +S EI + +AL + + + QI + +V Sbjct: 73 VNCQFSMAVFSTGERKKRP----RGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEV 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDL 177 + ADGG A + A +AL D LK +V A + + P++D+ Sbjct: 129 LHADGGIYPACVNAATLALIDA-------------GIPLKEYVCACTASLANNDVPLLDV 175 Query: 178 DYGED----STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + E+ T+ V A + SG IV ++ S F DH +L+ A D+ + Sbjct: 176 SHQEEIIGGPTLTVAA---LPMSGKIVLMEMSQR---FHVDHLQKVLDKALQGCKDIKSI 229 Query: 234 QKDVISNEV 242 + + + + Sbjct: 230 LDEAVKSHI 238 >gi|116754658|ref|YP_843776.1| exosome complex RNA-binding protein Rrp42 [Methanosaeta thermophila PT] gi|116666109|gb|ABK15136.1| ribosomal RNA-processing protein RRP42 [Methanosaeta thermophila PT] Length = 257 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 23/236 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR Q R I + R + K AEGS LVK G T ++ ++ P + G I Sbjct: 22 RADGRSFTQYRPIEIERNIIKKAEGSALVKLGKTQVMVGIKIQPGEP-FPDAPNRGVIVT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113 ++P ++ G E+ R++ R +R VDL AL G + I Sbjct: 81 NAELVPLASPI-----FEPGPPNEYGIELARVVDRGVRESGSVDLDALCIVPGEKVWIIF 135 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM----L 169 ID ++ G A+ GA AL +++F L + + V I Sbjct: 136 IDIHILDDCGNIMDASSLGAIAALLGATVP----ASRFGLGEDFQLPVRDIPIATTAVEF 191 Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + D D E++ D + G I +Q S S+D + ++++A D Sbjct: 192 GDVVLFDPDVDEEAIADAKLTVITKADGTICGMQKSGP-GMLSEDQVYRIVDIACD 246 >gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H 168] gi|254782723|sp|B8CW78|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H 168] Length = 705 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 33/228 (14%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRST 70 T + +K A GS + ++GDT +L TAT+ E P+ + + + G +P S Sbjct: 18 TGKYAKQANGSVVARYGDTTVLVTATMSEPREGIDYFPLMVNYEERVYAI---GKIPGSI 74 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R GR + R+I R LR + QII + D A+ Sbjct: 75 TRR------EGRPRDVATLAARLIDRPLRPLFPEGFRHDVQIIATVLSVDNDCEPDILAL 128 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 GA VAL LS + G + + G++ G +++ D E +D Sbjct: 129 NGASVAL--------------TLSDIPFDGPIGGVKVGLVDGELVINPDEEEREKSKLDL 174 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 T ++ G+ E S+D + LA I L+ LQ+++ Sbjct: 175 TVAGTRDAVLMVEAGANE---VSEDVMLDAIELAHQEIKRLVLLQEEI 219 >gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis LMG 19424] gi|226702643|sp|B3R3W3|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis LMG 19424] Length = 723 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + I + Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKEDEFAYTIRL 429 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 430 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 476 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 477 FAVLTDILGDEDHLGDMDFKVAGTDNG 503 >gi|226227170|ref|YP_002761276.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca T-27] gi|257096690|sp|C1A3Y1|PNP_GEMAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226090361|dbj|BAH38806.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca T-27] Length = 732 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 23/175 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKH-GW 58 +R+ GR+++++R IS+ V A GS L G T L ATL K + + K G Sbjct: 309 LRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQRLDSIKEPGE 368 Query: 59 IT----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 +T Y P STG S R+ G + RAL+ V+ A I I Sbjct: 369 VTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHGN----LAERALQGVLPDFADFPYTIRI 424 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 DV++++G + A++ G ++L D LK VA ++ G++ Sbjct: 425 VSDVLESNGSSSMASVCGGSLSLFDA-------------GVPLKAAVAGVAMGLI 466 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 25/227 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNR 73 T R++K A GS +V+FG+T +L T+ E +P + ++ T G +P G Sbjct: 17 TGRMAKQAAGSAVVQFGETMVLAAVTVSENQSPLPFFPLTVEYKEKTYAAGKIP---GGF 73 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 +KRE GR R+I R++R + Q+ I + A+ A Sbjct: 74 IKRE---GRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQENDADVLALVAA 130 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 AL+ ++K G +A + G + G+ +++ + + D++ V Sbjct: 131 SFALN---------ASKIPFL----GPIAGVRVGRVQGHWVLNPTFQQLGFSDLEL-VVA 176 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 IV V+G + S++ L L+ D I +LI +Q+++++ Sbjct: 177 GSKDSIVMVEGGS--LEVSEEDVLESLRLSHDGIRELIGMQEELLAK 221 >gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus metallidurans CH34] gi|187611276|sp|Q1LPW7|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus metallidurans CH34] Length = 725 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + I + Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 429 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 430 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 476 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 477 FAVLTDILGDEDHLGDMDFKVAGTDAG 503 >gi|313159231|gb|EFR58601.1| polyribonucleotide nucleotidyltransferase [Alistipes sp. HGB5] Length = 744 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 12/146 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNT 54 +RL GR+ +++R I A GS + G+T LT+ TL ++K + ++ T Sbjct: 323 LRLDGRKTDEIRPIWCEVDYLPAAHGSAIFTRGETQSLTSVTLGTKLDEKQKDEVLVQGT 382 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y P STG +S R+ G + RAL+ +V L + + Sbjct: 383 EQ--FVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMVPLGEENPYAVRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A + +AL D Sbjct: 437 VSDILESNGSSSMATVCAGTLALMDA 462 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 19/119 (15%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63 R+I + T +++K A+GS +VK GDT LL T + +P+ + + +Y Sbjct: 20 RQIEIETGKLAKQADGSVVVKQGDTMLLATVVAAKDAKPDTDFMPLQVEYKE------KY 73 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122 R G +KRE GR + R+I RALR + A ++ + ++I AD Sbjct: 74 ASCGRYPGGFMKRE---GRANDSEILVARLIDRALRPL--FPADYHAEVYVTVNLISAD 127 >gi|75045923|sp|Q7YRA3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName: Full=Exosome component 4; AltName: Full=Ribosomal RNA-processing protein 41 gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus] gi|296480766|gb|DAA22881.1| exosome complex exonuclease RRP41 [Bos taurus] Length = 245 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 31/191 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + + + + L+ L R QI Sbjct: 69 RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + G Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169 Query: 174 IVDLDYGEDST 184 + DL + E++ Sbjct: 170 LADLSHVEEAA 180 >gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16] gi|122947022|sp|Q0KCT4|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16] Length = 723 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + I + Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 429 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 430 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 476 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 477 FAVLTDILGDEDHLGDMDFKVAGTDNG 503 >gi|268679240|ref|YP_003303671.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum deleyianum DSM 6946] gi|268617271|gb|ACZ11636.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum deleyianum DSM 6946] Length = 746 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 16/172 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58 +R GR+ ++R IS+ + A GSCL G T L ATL ++ M+ T+ Sbjct: 343 VRADGRKLTEIRPISIETNLLPLAHGSCLFTRGQTQALVIATLGNDKDAQMYDLLTEKSS 402 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQI 112 ++ + + G V EA R GR R +G RAL VVD++ L + ++ Sbjct: 403 VSDTFMVNYNFPGFSVG-EASPLRAPGR-----RELGHGNLARRALEPVVDINRLQTIRL 456 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164 + ++++++G + A I G +AL +E + V +G A+ Sbjct: 457 V--SEILESNGSSSMATICGGALALKAAGVEIEKLVAGIAMGLVFEGDKHAV 506 >gi|291514384|emb|CBK63594.1| polyribonucleotide nucleotidyltransferase [Alistipes shahii WAL 8301] Length = 747 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 8/144 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +RL GR+ +++R I A GS + G+T LTT T L+EKV + Sbjct: 323 VRLDGRKTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKLDEKVKDEVLVQGT 382 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG +S R+ G + RAL+ ++ L + + Sbjct: 383 EQFVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMIPLGEDNPYAVRVVS 438 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A + +AL D Sbjct: 439 DILESNGSSSMATVCAGTLALMDA 462 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 19/119 (15%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63 R+I + T +++K A+GS +VK GDT LL T + +P+ + + +Y Sbjct: 20 RQIEIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKE------KY 73 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122 + R G +KREA R + R+I RALR + A ++ + ++I AD Sbjct: 74 AAVGRFPGGFMKREA---RANDSEVLVARLIDRALRPL--FPADYHAEVYVTVNLISAD 127 >gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays] Length = 240 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 99/257 (38%), Gaps = 48/257 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R + T A GS GDT +L + K G Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAA----------VYGPKPG---T 53 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 G P V + +G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 54 RKGENPEKASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 113 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGML-CGYPIVDLDY 179 DG + AI + AL + + H+A AISCG++ G I+D Sbjct: 114 DGSLMSCAINASCAAL--------------AFAGIPMKHLAVAISCGVMDNGVVILDTSR 159 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAER--------------ATFSQDHFFAMLN---L 222 E+ A+ V +S VE + +R S+D +F + + Sbjct: 160 AEEQQARSFAHLVFPNSRKSVESKDPTQRDEESERGLITCITHGAMSEDDYFNCIERGVM 219 Query: 223 AKDRIADLIK--LQKDV 237 A RI+D ++ LQK+V Sbjct: 220 ASSRISDFMRKTLQKEV 236 >gi|18313177|ref|NP_559844.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum aerophilum str. IM2] gi|29336869|sp|Q8ZVN0|ECX2_PYRAE RecName: Full=Probable exosome complex exonuclease 2 gi|18160691|gb|AAL64026.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2] Length = 274 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 29/251 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q R + + V K A+GS VK G TH++ + P + G + Sbjct: 29 RVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQP-FPDAPDEGVLVV 87 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQII--I 114 +LP ++ G + E+ R++ R +R VD L G + + I Sbjct: 88 NAEVLPHASPY-----TEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWI 142 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164 D VI DG A + AL + + D +NK L + A+ Sbjct: 143 DLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKLDRNNKAPLPVDISKAPIAV 202 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA- 223 S G + +D + E+ ++D F ++ IV Q + F+Q A LNLA Sbjct: 203 SVGKIGNVLFLDPTFEEELSLDGRITFTFSED-KIVAAQKTL--GYFTQSEIEAALNLAL 259 Query: 224 --KDRIADLIK 232 +DR+ + +K Sbjct: 260 RGRDRLLEALK 270 >gi|237757160|ref|ZP_04585586.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium yellowstonense SS-5] gi|237690677|gb|EEP59859.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium yellowstonense SS-5] Length = 613 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 22/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++R I + V GS + G T T TL I + T Sbjct: 312 RIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGETL 371 Query: 62 E-----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 + Y P STG VS R+ G + RAL ++ I + Sbjct: 372 KRFMLHYNFPPFSTGEAKPPRPVSRREIGHGN----LAERALEPLIPSEEEFPYVIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+++++G T A + G +AL D M K HVA I+ G++ Sbjct: 428 DILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLI 467 >gi|123966596|ref|YP_001011677.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9515] gi|187610313|sp|A2BXQ9|PNP_PROM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123200962|gb|ABM72570.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 721 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 34/237 (14%) Query: 12 REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 REI LT + + A G+ +++ GDT LL TAT K +P+ + + Sbjct: 13 REIRLTTGLYAPQANGAVMIECGDTSLLVTATKTNKKEAADFLPLICDYEEKLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G ++RE GR R+ I R+I R +R + + QI+ C + Sbjct: 70 ---RIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPIWMRDEIQIVASCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A L ++ G +AA+ G+L I++ Y E Sbjct: 124 ADVLAVTGASLAT--------------LLGEIPFYGPMAAVRVGLLGDDFILNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + + +LIK Q++++ + Sbjct: 170 KGDLDIIVAGSPEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKAQENLLKD 223 >gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Ailuropoda melanoleuca] Length = 245 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 101/250 (40%), Gaps = 35/250 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + + + + L+ L R QI Sbjct: 69 RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDSTA 169 Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + DL + E++ A ++ SG I ++ A +DH +L A D+ Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHT 226 Query: 233 LQKDVISNEV 242 L V+ V Sbjct: 227 LLDHVVRQHV 236 >gi|78779675|ref|YP_397787.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9312] gi|123553957|sp|Q319U4|PNP_PROM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78713174|gb|ABB50351.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9312] Length = 721 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 36/238 (15%) Query: 12 REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 REI LT + + A GS +++ GDT LL TAT K +P+ + + Sbjct: 13 REIRLTTGLYAPQANGSVMIECGDTSLLVTATKTTKKEVADFLPLICDYEEKLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVP 123 Query: 125 TRTAAITGAWVA--LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 A+TGA +A L + H G +AA+ G++ I++ Y E Sbjct: 124 ADVLAVTGASIATLLGEIPFH---------------GPMAAVRVGLIGDDFILNPSYREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + + +LIK Q D++ + Sbjct: 169 EKGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYESVTELIKSQVDLLKD 223 >gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri AV19] gi|29336820|sp|Q8TYC2|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2 gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to RNase PH [Methanopyrus kandleri AV19] Length = 267 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 30/244 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + R I + V A GS LV+ G+T L+ LE P + + G + Sbjct: 23 RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRP-YPDSPNEGALAV 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113 ++P + + G + E+ R++ R +R ++DL L + Sbjct: 82 NAELVPLADPS-----FEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALH-----------DCLQHMEDCSNKFQLSQVLKGHVA 162 +D V+ DG A++ G+ AL D ++ ME+ + ++ Sbjct: 137 VDIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDDEVEVMEEDTEPLAIND----FPI 192 Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222 +++ + Y +VD E+ +D +T+SG + VQ E F + ++L Sbjct: 193 SVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQ-KGELGDFPEHLLEDAIDL 251 Query: 223 AKDR 226 A + Sbjct: 252 ATKK 255 >gi|221101900|ref|XP_002160475.1| PREDICTED: similar to putative exosome complex exonuclease RRP41 [Hydra magnipapillata] Length = 244 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58 +R GR+ +++R+I+ + + A+GS ++ G+T ++ + +V + T H Sbjct: 12 LRFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASVYGPHEVSNRSK-TLHDSTL 70 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 I ++ M S R R +G R S EI ++ + + + QI I Sbjct: 71 INCQFSMATFSMSERKNRP-----KGDRKSTEISMLLEKTFATAIMTELYPRSQIDIYVQ 125 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED 146 VIQ+DGG A I A +AL D M+D Sbjct: 126 VIQSDGGVIAACINVATLALIDAGVPMKD 154 >gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha JMP134] gi|123625489|sp|Q473U7|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha JMP134] Length = 728 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + I + Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 429 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 430 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 476 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 477 FAVLTDILGDEDHLGDMDFKVAGTDNG 503 >gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein [Aedes aegypti] Length = 307 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 5/145 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR++N+ R+ + V A+GS ++ G+T ++ + ++P + G + Sbjct: 42 RKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYC 101 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 ++ P + +R + + + + + +AL+ VV + QI I +V++ Sbjct: 102 DFKFSPFACIHR-----KNPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLED 156 Query: 122 DGGTRTAAITGAWVALHDCLQHMED 146 DG A IT A +AL D M D Sbjct: 157 DGSVLAAVITAAGLALSDATISMFD 181 >gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4] gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4] Length = 247 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +R+ GR+ N++R I++ + K A+GS + G+T ++ ++ + + + Sbjct: 12 LRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAVV 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E+ ST R ++ G + + EI ++ +A S + QI I V+ Sbjct: 72 KCEFSSSSFSTTERKPQQKTKGDR--VTTEIANLVKQAFESTIHTHLYPRSQINIYLQVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMED 146 Q+DGG + AAI + +AL D M+D Sbjct: 130 QSDGGLKAAAINASTLALIDAGISMKD 156 >gi|15241441|ref|NP_196962.1| polyribonucleotide nucleotidyltransferase, putative [Arabidopsis thaliana] gi|4971998|emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] gi|4972000|emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] gi|7573307|emb|CAB87625.1| polynucleotide phosphorylase [Arabidopsis thaliana] gi|332004667|gb|AED92050.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] Length = 991 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 26/186 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 R+ GR +++R I GS L GDT +L T TL + + + K Sbjct: 363 FRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPPK 422 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P T KR ++ R+ G + +AL +V+ I I+ Sbjct: 423 KRFML-HYSFPPYCTNEVGKRGGLNRREVGHGT----LAEKALLAVLPPEEAFPYTIRIN 477 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V+ +DG T A++ G +AL D L+ HVA +S G++ V Sbjct: 478 SEVMSSDGSTSMASVCGGSMALMDA-------------GIPLRAHVAGVSVGLITD---V 521 Query: 176 DLDYGE 181 D GE Sbjct: 522 DPSSGE 527 >gi|317061093|ref|ZP_07925578.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12] gi|313686769|gb|EFS23604.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12] Length = 707 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TATL +E++ + + Sbjct: 324 RVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKEDEQLVDNLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + RALR V+ I + D Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A+I G +AL +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLALMSA-------------GVPIKEHVAGIAMGLI 478 >gi|221113409|ref|XP_002164788.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 258 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 6/138 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR EN++R + L A GS V+ DT L+ P + + G I Sbjct: 35 RQDGRGENEIRPMYLKAGTIHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFC 94 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E P S RV Q S+E I +A S V L + QI I ++++ Sbjct: 95 EVTFAPFSWHERV------SNQDSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILEY 148 Query: 122 DGGTRTAAITGAWVALHD 139 G + A A +AL D Sbjct: 149 SGNCLSYAFIAASIALAD 166 >gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti] gi|108877466|gb|EAT41691.1| conserved hypothetical protein [Aedes aegypti] Length = 307 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 5/145 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR++N+ R+ + V A+GS ++ G+T ++ + ++P + G + Sbjct: 42 RKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYC 101 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 ++ P + +R + + + + + +AL+ VV + QI I +V++ Sbjct: 102 DFKFSPFACIHR-----KNPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLED 156 Query: 122 DGGTRTAAITGAWVALHDCLQHMED 146 DG A IT A +AL D M D Sbjct: 157 DGSVLAAVITAAGLALSDATISMFD 181 >gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus] gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus] Length = 245 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 35/231 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + + + + L+ L R QI Sbjct: 69 RPLVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + G Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169 Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 + DL + E++ A ++ SG I ++ A +DH +L A Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAA 217 >gi|118399581|ref|XP_001032115.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena thermophila] gi|89286453|gb|EAR84452.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena thermophila SB210] Length = 240 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 10/148 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58 R GR++N++R++ + EGSC + G T ++ K P R G+ Sbjct: 11 FREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLI----KGPHNKSTRRESEGF 66 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + +Y + P S +R K E + + SV+ LGS +I I V Sbjct: 67 LNVQYNVAPFSGTDRRKISKFDKDWN----EFTENLRVSFESVILTEQLGSGEIDIIVSV 122 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED 146 IQADG +++ +AL D M+D Sbjct: 123 IQADGSAKSSIFNAISLALMDAGIPMKD 150 >gi|16329253|ref|NP_439981.1| polynucleotide phosphorylase/polyadenylase [Synechocystis sp. PCC 6803] gi|81670191|sp|P72659|PNP_SYNY3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|1651733|dbj|BAA16661.1| polyribonucleotide nucleotidyltransferase [Synechocystis sp. PCC 6803] Length = 718 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 33/228 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73 ++ A GS L++ GDT +L TAT + +P+ + G + A G +P G Sbjct: 22 LAPQAGGSVLIQSGDTAVLVTATRAKGRDGIDFLPLTV--DYEGRLYA-AGRIP---GGF 75 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++RE GR ++ I R+I R LR + QI+ + + A+TGA Sbjct: 76 LRRE---GRPPEKATLISRLIDRPLRPLFPHWLRDELQIVATTLSMDEEVPPDVLAVTGA 132 Query: 134 WVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 VA+ L+Q+ KG +AA+ G++ I++ Y E D+D Sbjct: 133 SVAVI--------------LAQIPFKGPMAAVRVGLVGDDFIINPTYREVHNGDLDLVVA 178 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T +G IV V+ A + + ++ + + DLI Q++++++ Sbjct: 179 GTPAG-IVMVEAGANQ--LPEQDIIEAIDFGYEAVQDLINAQRELMTD 223 >gi|302348935|ref|YP_003816573.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans 345-15] gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans 345-15] Length = 280 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 25/231 (10%) Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH-GWITAEYGMLPRST 70 R +S+ V A+GS VK G+T +L LE +P R+T + G + + P ++ Sbjct: 38 RNLSIQVGVIDKADGSAWVKLGNTQVLVGVKLEVGIPY--RDTPNEGVLQVNSELTPVAS 95 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------IIIDCDVIQAD 122 G + E+ R+I R+LR +DLS+L R + ID V+ D Sbjct: 96 PT-----FEPGPPDENAVELSRVIDRSLRDPKAIDLSSLVIRPGEKAWVLWIDIYVLDYD 150 Query: 123 GGTRTAAITGAWVALHD--CLQHMEDCSNKFQLSQ------VLKGHVAAISCGMLCGYPI 174 G A++ G AL + ++ E S + +++ L VA ++ + Y + Sbjct: 151 GNYFDASMLGVMAALMNTKVPEYEETESGEIIINREKGTPLKLNRRVALVTSVKVGDYIL 210 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 +D + E+ D + G IV +Q S +++D +++++++ Sbjct: 211 IDPNIDEELLADSRMVIAFDEQGTIVGMQKSG-MGGYTRDELLKVIDISRN 260 >gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 246 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 20/183 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58 +RL GR+ + R + + +GSC + G + + + + + + KH Sbjct: 13 LRLDGRRPREARRMDIAFGTLSACDGSCDITLGQSKVCAS-VFGPRESLHKQEAKHDKAL 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +T E + + NR + R+ S++I + + RSV+ LS + QI I +V Sbjct: 72 VTCEVAVAAFAGENRRNPQ----RRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DG + A I A +AL D M D V I G+L + ++DL Sbjct: 128 LQQDGNEKIACINAACLALIDANVAMRDA-------------VCCIDAGILDEHMLIDLT 174 Query: 179 YGE 181 E Sbjct: 175 NDE 177 >gi|307105973|gb|EFN54220.1| hypothetical protein CHLNCDRAFT_36088 [Chlorella variabilis] Length = 852 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 92/230 (40%), Gaps = 38/230 (16%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-ITAEY-------GMLPR 68 T ++++ A GSCLV+ G+T +L AT + +P W R +Y G +P Sbjct: 136 TGKLARLANGSCLVQCGNTTVLAAATCQ--LPPWSRREAQSLQFEVDYREKLYAVGRIP- 192 Query: 69 STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG-- 124 G KRE + + E+ R IGRALR + + + V+ ADGG Sbjct: 193 --GTYNKREGTA-----KEHEVLAGRRIGRALRPLFPKGF--ALDAAVFASVLSADGGCD 243 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A++ A AL CS+ V VA + G L P V+ + Sbjct: 244 PEVMAVSSASAALL--------CSDMPWAGPVAAARVAMLHDGQLVVGPSVE----QQEA 291 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 +D T G + ++ E+ +Q F L+LA LIK Q Sbjct: 292 AVLDLLVAATADGRVTMLEADGEQVPETQ--FLNALHLAVSTTQQLIKPQ 339 >gi|254168333|ref|ZP_04875178.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum boonei T469] gi|197622614|gb|EDY35184.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum boonei T469] Length = 226 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 14/130 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R +++T+ AEGS LV G+T +L +E P + G +T Sbjct: 28 RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 + P ++ G G + E+ R++ R +R +DL L + + Sbjct: 87 NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141 Query: 114 IDCDVIQADG 123 ID V+ DG Sbjct: 142 IDIHVLDYDG 151 >gi|187929298|ref|YP_001899785.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii 12J] gi|226702680|sp|B2U7R6|PNP_RALPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187726188|gb|ACD27353.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12J] Length = 724 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L A L K I + G Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVAALGTKSDEQIIDALQGEYRD 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPPADEFGYTIRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 433 ITESNGSSSMASVCGGSLALMDA-------------GVPIKAHVAGVAMGLILEDNKFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D TD+G Sbjct: 480 LTDILGDEDHLGDMDFKVAGTDAG 503 >gi|15614970|ref|NP_243273.1| polynucleotide phosphorylase/polyadenylase [Bacillus halodurans C-125] gi|81786500|sp|Q9KA83|PNP_BACHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|10175027|dbj|BAB06126.1| polynucleotide phosphorylase [Bacillus halodurans C-125] Length = 704 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 27/225 (12%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNR 73 T +++K A G+ LV++GDT +L+TAT ++ +P + + G +P G Sbjct: 21 TGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP---GGF 77 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 +KRE GR ++ R+I R +R + Q+I + D + AA+ G+ Sbjct: 78 IKRE---GRPSEKAILASRLIDRPIRPLFPEGFRNEVQVISIVMSVDQDCSSEMAAMVGS 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 +AL + D +G +A ++ G + G ++ + +D D + V+ Sbjct: 135 SLAL-----SISDIP--------FEGPIAGVTVGRIDGQFVI--NPTQDQLEKSDIHLVV 179 Query: 194 TDSGHIVE-VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + V+ AE +D + + I LI+ Q+ + Sbjct: 180 AGTKDAINMVEAGAEEV--PEDVMLEAIMFGHNEIKRLIEFQEKI 222 >gi|257467022|ref|ZP_05631333.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium gonidiaformans ATCC 25563] gi|315918159|ref|ZP_07914399.1| polyribonucleotide nucleotidyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313692034|gb|EFS28869.1| polyribonucleotide nucleotidyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 707 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TATL +E++ + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + RALR V+ I + D Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A+I G +AL +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLALMSA-------------GVPIKEHVAGIAMGLI 478 >gi|317058280|ref|ZP_07922765.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_5R] gi|313683956|gb|EFS20791.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_5R] Length = 707 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TATL +E++ + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + RALR V+ I + D Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A+I G +AL +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLALMSA-------------GVPIKEHVAGIAMGLI 478 >gi|83814865|ref|YP_445890.1| polynucleotide phosphorylase/polyadenylase [Salinibacter ruber DSM 13855] gi|83756259|gb|ABC44372.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber DSM 13855] Length = 722 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 27/142 (19%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 R +SL T R++K A+GS + + GDT +L+TATL + V + +T +Y Sbjct: 26 RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSV----NESNFFPLTVDYREKFAAG 81 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---------I 114 G +P G +KRE GR + R+I RA+R + ++ Sbjct: 82 GKVP---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAGQDF 135 Query: 115 DCDVIQADGGTRTAAITGAWVA 136 D DVI G + ++GA A Sbjct: 136 DADVIAGVGSSAALMLSGAPFA 157 >gi|187611315|sp|Q2S1P1|PNP_SALRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 712 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 27/142 (19%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 R +SL T R++K A+GS + + GDT +L+TATL + V + +T +Y Sbjct: 16 RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSV----NESNFFPLTVDYREKFAAG 71 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---------I 114 G +P G +KRE GR + R+I RA+R + ++ Sbjct: 72 GKVP---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAGQDF 125 Query: 115 DCDVIQADGGTRTAAITGAWVA 136 D DVI G + ++GA A Sbjct: 126 DADVIAGVGSSAALMLSGAPFA 147 >gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17] gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17] Length = 773 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 18/228 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR Q+R I A GS L G+T + T TL E++ + + Sbjct: 314 RIDGRSTTQIRPIESEVHFLPRAHGSALFTRGETQTIATTTLGTKDAEQMIDGLNGLSYQ 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL V+ I + D Sbjct: 374 HFMLHYNFPPYSVGE-VGRFGAPGR---REIGHGKLAWRALHPVLPSKEEFPYTIRVTSD 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G ++L D ++ + + +L+G AI + D+ Sbjct: 430 ITESNGSSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEGKDYAI---------LSDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T G I +Q + A +++ F A L AKD Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITKEIFEAALAQAKD 527 >gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus] Length = 245 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 35/231 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSRALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y ST R +R G R S E+ + + + + L+ L R QI Sbjct: 69 RALVNCQYSSATFSTAERKRRP-----HGDRKSCELGLQLRQTFEAAI-LTQLHPRSQID 122 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGGT A + A +A+ D M D V A S G + G Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169 Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 + DL + E+++ A ++ SG I ++ A +DH +L A Sbjct: 170 LTDLSHVEEASGSPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAA 217 >gi|254168306|ref|ZP_04875152.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469] gi|197622815|gb|EDY35384.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469] Length = 270 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 14/130 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R +++T+ AEGS LV G+T +L +E P + G +T Sbjct: 28 RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 + P ++ G G + E+ R++ R +R +DL L + + Sbjct: 87 NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141 Query: 114 IDCDVIQADG 123 ID V+ DG Sbjct: 142 IDIHVLDYDG 151 >gi|294507800|ref|YP_003571858.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8] gi|294344128|emb|CBH24906.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8] Length = 745 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 27/142 (19%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 R +SL T R++K A+GS + + GDT +L+TATL + V + +T +Y Sbjct: 49 RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSV----NESNFFPLTVDYREKFAAG 104 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---------I 114 G +P G +KRE GR + R+I RA+R + ++ Sbjct: 105 GKVP---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAGQDF 158 Query: 115 DCDVIQADGGTRTAAITGAWVA 136 D DVI G + ++GA A Sbjct: 159 DADVIAGVGSSAALMLSGAPFA 180 >gi|156550959|ref|XP_001603897.1| PREDICTED: similar to ENSANGP00000009222 [Nasonia vitripennis] Length = 270 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 8/144 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55 +R GR+ ++R I L V A+GS ++ G T +L T + P N Sbjct: 12 LRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQ-PRGKANANALKAV 70 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 G + +Y S G +++ G + +SQE + + A+ ++++L QI I Sbjct: 71 KGIVNCQYSTAVFSFGAGERKKKPRGDR--KSQERSQQLRHAMEAIINLELFARSQIDIF 128 Query: 116 CDVIQADGGTRTAAITGAWVALHD 139 +V+Q DG A+ A +AL D Sbjct: 129 VEVLQVDGSDFCVAVNAATLALID 152 >gi|289595859|ref|YP_003482555.1| 3' exoribonuclease [Aciduliprofundum boonei T469] gi|289533646|gb|ADD07993.1| 3' exoribonuclease [Aciduliprofundum boonei T469] Length = 270 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 14/130 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R +++T+ AEGS LV G+T +L +E P + G +T Sbjct: 28 RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 + P ++ G G + E+ R++ R +R +DL L + + Sbjct: 87 NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141 Query: 114 IDCDVIQADG 123 ID V+ DG Sbjct: 142 IDIHVLDYDG 151 >gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio ammonificans HB-1] gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio ammonificans HB-1] Length = 714 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 38/231 (16%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRS 69 T +V+K A+GS LV GDT +L TA + ++ P+ + + + G +P Sbjct: 19 TGKVAKQADGSVLVSQGDTIVLVTAVMSDEPREDVDFFPLLVEYRERAYAA---GKIP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA- 128 G +KRE G+ R+ R++R + Q+I VI AD A Sbjct: 74 -GGFIKRE---GKPTDEEILKARVTDRSIRPIFPKGFRNDVQVI--AFVISADQENDPAV 127 Query: 129 -AITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA ALH +S++ + V A+ + G +++ Y E D Sbjct: 128 LAINGASAALH--------------ISRIPFEKPVGAVRVARVDGKLVINPSYEERQRAD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +D T+ +V V+G A+ ++ + LA + I ++K Q ++ Sbjct: 174 IDLIVSGTEDA-VVMVEGGAKEV--PEEEVLDAILLAHEEIKKIVKAQDEL 221 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 25/176 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR+ +++R IS+ + A GS L G T L T TL E ++ + + Sbjct: 311 VRIDGRKPDEIRPISIEVGLLPRAHGSALFTRGQTQALVTTTLGTPEEYQLVEGLMPEEQ 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIII 114 Y P G +S +G +EI + RAL V+ I + Sbjct: 371 KRFMLHYNFPPFCVGE------ISPMRGPGRREIGHGALAERALAPVIPPEEEFPYVIRV 424 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 D+++++G + A + G ++L D +K VA I+ G++ Sbjct: 425 VSDILESNGSSSMATVCGGSLSLMDA-------------GVPIKAQVAGIAMGLIM 467 >gi|169831097|ref|YP_001717079.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C] gi|257096687|sp|B1I393|PNP_DESAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169637941|gb|ACA59447.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C] Length = 741 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 29/207 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR +++R+IS+ V GS L + G T +L+ TL +E++ + + Sbjct: 324 VRLDGRAFDEIRDISVEVNVLPRTHGSGLFQRGQTQVLSVLTLGAVRDEQILDGLDTQET 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIII 114 Y STG EA R GR +EI + GRAL +V+ + I I Sbjct: 384 KRFMHHYNFPSFSTG-----EARPIRSAGR-REIGHGALAGRALEAVLPGEDVFPYTIRI 437 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T A++ G+ +AL D +K VA I+ G++ Sbjct: 438 VSEVLSSNGSTSMASVCGSCLALMDA-------------GVPIKAPVAGIAMGLIKEGDE 484 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T+ G Sbjct: 485 VAVLTDIQGTEDHLGDMDFKVAGTEQG 511 >gi|11498105|ref|NP_069330.1| exosome complex RNA-binding protein Rrp42 [Archaeoglobus fulgidus DSM 4304] gi|29336575|sp|O29756|ECX2_ARCFU RecName: Full=Probable exosome complex exonuclease 2 gi|83754328|pdb|2BA0|I Chain I, Archaeal Exosome Core gi|83754329|pdb|2BA0|H Chain H, Archaeal Exosome Core gi|83754330|pdb|2BA0|G Chain G, Archaeal Exosome Core gi|83754337|pdb|2BA1|G Chain G, Archaeal Exosome Core gi|83754338|pdb|2BA1|H Chain H, Archaeal Exosome Core gi|83754339|pdb|2BA1|I Chain I, Archaeal Exosome Core gi|295322010|pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322011|pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322012|pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|2650132|gb|AAB90743.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 259 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ R++ + V + AEGS LVK GDT ++ ++ P + G I Sbjct: 23 RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEP-YPDTPDRGVIIV 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL 107 ++P ++ G S E+ R++ R +R VDLS L Sbjct: 82 NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLSKL 124 >gi|207742728|ref|YP_002259120.1| n terminus of a polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum IPO1609] gi|206594122|emb|CAQ61049.1| probable n terminus of a polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum IPO1609] Length = 481 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + I + Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLIL 470 >gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404] gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404] Length = 240 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 43/191 (22%), Positives = 89/191 (46%), Gaps = 27/191 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIR---NT 54 +R+ GR+ N++R R++ + ++GS V+ G+T ++ T++ + +R ++ Sbjct: 9 LRIDGRRWNELRRFEC--RINTHPNSSDGSSYVEQGNTKVV--CTVQGPIEPQLRSQQHS 64 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 +H I + +T R KR + R E++ ++ + + ++ III Sbjct: 65 EHANIEINLTIANFATFERKKR----NKNEKRLIELKNILEKTFMESIMINLYPRTNIII 120 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 + V+ DGG +A +AL D M D +V++I+CG+ P+ Sbjct: 121 NIQVLSQDGGLLSAITNSITLALIDSGISMYD-------------YVSSINCGLYDTTPL 167 Query: 175 VDLDYGEDSTI 185 +DL+ E++ I Sbjct: 168 LDLNNLEENDI 178 >gi|225848390|ref|YP_002728553.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium azorense Az-Fu1] gi|257096710|sp|C1DTW6|PNP_SULAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225644547|gb|ACN99597.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium azorense Az-Fu1] Length = 707 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 22/174 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +R+ GR+ ++R I + V GS + G T T TL I + + G + Sbjct: 313 IRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSLSEGQIEESIEAGEV 372 Query: 60 TAE----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG A S R+ G + RAL ++ I + Sbjct: 373 MKRFMLHYNFPPFSTGEAKPPRATSRREIGHGN----LAERALEPLIPPEEEFPYAIRVV 428 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+++++G T A + G +AL D M K HVA I+ G++ Sbjct: 429 SDILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLI 469 >gi|313884899|ref|ZP_07818651.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola ACS-139-V-Col8] gi|312619590|gb|EFR31027.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola ACS-139-V-Col8] Length = 698 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGN 72 +V+K A G+ LV++G+T +L TA +K P+ + + + G +P G Sbjct: 21 QVAKQASGAVLVRYGETVVLATAVGSKKAGTGDFFPLTVNYEEKMYAV---GKVP---GG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR + R+I R +R + QI+ + D AA+ G Sbjct: 75 FLKRE---GRPSEHATLTARLIDRPIRPMFPDGVRNEVQIVATVLSVDQDNSPEMAAMFG 131 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 A +AL + D G +A + + G I++ + +T ++D Sbjct: 132 ASLAL-----GVSDVP--------FDGPIAGVKVARVDGQLIINPSVDQLATTEIDLTVA 178 Query: 193 MTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T + ++VE ++ A + L + I +L+ Q+++IS Sbjct: 179 GTKTAINMVE----SDAAEVPEAEMLEALLFGHEAIKELVAFQEEIIS 222 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 32/209 (15%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ ATL E ++ + + Sbjct: 317 VRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVATLAPLREHQIIDGLGTEDY 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIG-RALRSVVDLSALGSRQII 113 Y P S G +GR G GR + +G RAL+ V+ I Sbjct: 377 KRFMHHYNFPPYSVGE-------TGRMGSPGRREVGHGALGERALKHVIPSEEEFPYVIR 429 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---- 169 + +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 430 LVSEVLESNGSSSQASICGSTLAMMDA-------------GIPIKAPVAGIAMGLVMDDD 476 Query: 170 CGYPIV-DLDYGEDSTIDVDANFVMTDSG 197 Y I+ D+ ED D+D T G Sbjct: 477 ADYTILTDIQGLEDHLGDMDFKVAGTAKG 505 >gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001] Length = 266 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 28/196 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHG 57 +R+ GR+ N++R + R + A+GS ++ G T ++ T T ++ TK Sbjct: 13 LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQTKEA 72 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +T + S+ +R KR GR R+QE++ I +A+ + + I I Sbjct: 73 AVTVNLVVAGFSSVDRRKR----GRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLH 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 V+ DG A + + +AL D M D ++AA + G Y Sbjct: 129 VLSQDGSLLAALLNASTLALIDAGIPMTD-------------YIAACTAGSTSTYAAADD 175 Query: 173 ---PIVDLDYGEDSTI 185 P++DL+ E+ + Sbjct: 176 GADPLLDLNTQEEQEL 191 >gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba] gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba] Length = 246 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 9/140 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-HGWI 59 +RL GR+ +++R I V + +GS ++ G+T +L P + + I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVY----GPHQAKGKQTESII 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y ST R R R +S E + + +AL + + QI I +V+ Sbjct: 69 NCQYSQATFSTAERKNRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVL 124 Query: 120 QADGGTRTAAITGAWVALHD 139 QADG A+ A +AL D Sbjct: 125 QADGANYAVALNAATLALID 144 >gi|257094905|ref|YP_003168546.1| polynucleotide phosphorylase/polyadenylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047429|gb|ACV36617.1| Polyribonucleotide nucleotidyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 706 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V A GS L G+T + ATL +E++ + Sbjct: 315 RIDGRDTRTVRPIAIRSGVLPRAHGSSLFTRGETQAIVVATLGTGRDEQIIDALSGEYRE 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P +TG GR G + +E+ R+ RAL +V+ S I + Sbjct: 375 RFMLHYNFPPYATGE-------CGRVGTPKRREVGHGRLAKRALLAVLPAPEDFSYTIRV 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D LK HVA I+ G++ Sbjct: 428 VSEITESNGSSSMASVCGASLALMDA-------------GVPLKAHVAGIAMGLI 469 >gi|167754065|ref|ZP_02426192.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216] gi|167658690|gb|EDS02820.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216] Length = 737 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ +++R I A GS + G+T LTT TL +EKV + Sbjct: 324 RLDGRRTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKMDEKVKDEVLVQGTE 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG +S R+ G + RAL+ +V + + + D Sbjct: 384 QFVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMVPVGEENPYAVRVVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 440 ILESNGSSSMATVCAGTLALMDA 462 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 19/119 (15%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63 REI + T +++K A+GS +VK GDT LL T + +P+ + + +Y Sbjct: 20 REIMIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKE------KY 73 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122 R G +KRE G+ + R+I RALR + + ++ + ++I AD Sbjct: 74 AACGRYPGGFMKRE---GKANDSEILVARLIDRALRPL--FPSDYHAEVYVTVNLISAD 127 >gi|91774427|ref|YP_544183.1| polynucleotide phosphorylase/polyadenylase [Methylobacillus flagellatus KT] gi|123078691|sp|Q1GXD2|PNP_METFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91708414|gb|ABE48342.1| 3' exoribonuclease [Methylobacillus flagellatus KT] Length = 714 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ V GS L G+T L ATL +E++ ++ Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYAD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL +V+ I + Sbjct: 375 RFMLHYNMPPYATGE-------TGRVGTPKRREIGHGRLAKRALLAVLPSQEEFGYTIRV 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G ++L D LK HVA I+ G++ Sbjct: 428 VSEITESNGSSSMASVCGGCLSLLDA-------------GVPLKAHVAGIAMGLIKEGNR 474 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T+SG Sbjct: 475 VAVLTDILGDEDHLGDMDFKVAGTESG 501 >gi|217967533|ref|YP_002353039.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum DSM 6724] gi|254782720|sp|B8E2S5|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum DSM 6724] Length = 693 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 24/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGW 58 R+ GR+ N++R +S V GS L + G+T +L+ TL EE++ + ++ Sbjct: 315 RVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIIIDC 116 Y P S G EA R G + +EI + RAL ++ I + Sbjct: 375 YIHHYNFPPFSVG-----EAKPLR-GPKRREIGHGALAERALLPLIPKEEEFPYTIRVVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V+ ++G T A++ G+ ++L D +K HVA ++ G++ Sbjct: 429 EVLSSNGSTSMASVCGSSLSLMDA-------------GVPIKTHVAGVAMGLI 468 >gi|119872347|ref|YP_930354.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum islandicum DSM 4184] gi|119673755|gb|ABL88011.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum islandicum DSM 4184] Length = 274 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 25/238 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++R I + V K A+GS VK G TH++ + P + G + Sbjct: 29 RIDGREPERIRNIEIKTSVIKTADGSAEVKLGKTHVVAGVKVSLGQP-FPDAPDEGVLVV 87 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQII--I 114 +LP ++ G + E+ R+I R +R VD L G + + + Sbjct: 88 NAEVLPHASPY-----TEVGPPDEFAIELARVIDRGIRHCGYVDFKKLVVEGGKAYVLWV 142 Query: 115 DCDVIQADGG---------TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165 D VI DG T V + D D +NK L + A+S Sbjct: 143 DLYVINDDGNLIDAANLAAVAALKDTQLPVVVKDEQGVKLDRNNKTPLPIEVSKAPIAVS 202 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 G + G +D + E+ ++D F +++ IV VQ + TF+ L LA Sbjct: 203 VGKIGGVLFLDPTFEEELSLDGRITFTISED-RIVAVQKTI--GTFTSQELEMALELA 257 >gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella wadsworthensis 3_1_45B] gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella wadsworthensis 3_1_45B] Length = 707 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 23/203 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + + V GS L G+T L T TL +E++ + +H Sbjct: 322 RIDGRDTRTVRPIEIRQGVLPRTHGSALFTRGETQALVTTTLGTKQDEQIIDGLCEEQHD 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL++V+ + + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALKAVLPSPEEFQYTLRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ G +++ D ++D + + +G+ A+ + Sbjct: 435 VSEICESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGNRFAV---------L 485 Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197 D+ ED D+D T++G Sbjct: 486 TDILGDEDHLGDMDFKVAGTENG 508 >gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Sus scrofa] Length = 245 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 35/250 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSRALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + +A + + L+ L R QI Sbjct: 69 RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQAFEAAI-LTQLHPRSQID 122 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I V+QADGG A + A +A+ D M D V A S G + G Sbjct: 123 IYVQVLQADGGIYAACVNVATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169 Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + DL + E++ A ++ SG I ++ A +DH +L A D+ Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHT 226 Query: 233 LQKDVISNEV 242 + V+ V Sbjct: 227 VLDRVVRQHV 236 >gi|82703668|ref|YP_413234.1| polynucleotide phosphorylase/polyadenylase [Nitrosospira multiformis ATCC 25196] gi|123740603|sp|Q2Y5X9|PNP_NITMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|82411733|gb|ABB75842.1| 3' exoribonuclease [Nitrosospira multiformis ATCC 25196] Length = 701 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 29/176 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I++ + GS L G+T L ATL E+K+ + Sbjct: 314 RIDGRDTRTVRPITIRTGLLPRTHGSALFTRGETQALVVATLGTGRDEQKIDALQGDYSE 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113 ++ Y M P +TG +GR G + +EI R+ RAL +V+ + Sbjct: 374 RFML-HYNMPPYATGE-------TGRVGTPKRREIGHGRLAKRALVAVLPSPEEFGYSLR 425 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++ +++G + A++ G +AL D LKGHVA I+ G++ Sbjct: 426 VVSEITESNGSSSMASVCGGCLALMDA-------------GVPLKGHVAGIAMGLI 468 >gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium KB13] gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium KB13] Length = 710 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I ++ V GS L G+T L ATL I + G T Sbjct: 320 RIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALAVATLGTPRDAQIIDALQGEYTD 379 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P STG +GR G + +EI R+ RAL +V+ I + Sbjct: 380 RFMLHYNFPPFSTGE-------TGRVGSPKRREIGHGRLAKRALLAVLPEQEDFDYTIRL 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++++++G + A++ G +A+ D LK HVA I+ G++ Sbjct: 433 VSEIMESNGSSSMASVCGGCMAMLDA-------------GVPLKSHVAGIAMGLI 474 >gi|207723868|ref|YP_002254266.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum MolK2] gi|206589073|emb|CAQ36035.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum MolK2] Length = 752 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + I + Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D +K HVA ++ G++ Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLIL 470 >gi|123968917|ref|YP_001009775.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. AS9601] gi|187610314|sp|A2BSA7|PNP_PROMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123199027|gb|ABM70668.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. AS9601] Length = 721 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 32/236 (13%) Query: 12 REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 REI LT + + A GS +++ GDT LL TAT K +P+ I + + A G Sbjct: 13 REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTAKKEPSDFLPL-ICDYEEKLFAA--G 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 RIP---GGFMRRE---GRPPERATLIARLIDRPMRPLFPTWMGDEIQIVASCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+TGA +A G +AA+ G++ I++ Y E Sbjct: 124 ADVLAVTGASIA-------------TLVGEIPFYGPMAAVRVGLIGDDFILNPSYREIEK 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + + +LIK Q+D++ + Sbjct: 171 GDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLQD 223 >gi|291386759|ref|XP_002709750.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Oryctolagus cuniculus] Length = 784 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 39/210 (18%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62 N+ EIS + +++++A+GS +V+ GDT ++ TA + K +P+ + + A Sbjct: 53 NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G +P N ++RE G +EI R+I R++R + Q++ C+++ Sbjct: 109 AGRIPT---NYLRREI-----GSSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158 Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177 DG AI GA VAL LS + G V A+ GM+ G +V+ Sbjct: 159 VDGINEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNP 204 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207 E S+ ++ IV ++ SAE Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234 >gi|297584087|ref|YP_003699867.1| polyribonucleotide nucleotidyltransferase [Bacillus selenitireducens MLS10] gi|297142544|gb|ADH99301.1| polyribonucleotide nucleotidyltransferase [Bacillus selenitireducens MLS10] Length = 700 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 30/232 (12%) Query: 15 SLTRRVSKYAE---GSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68 +L+ V KYA+ G+ +VK+GDT +L+TAT ++ +P + + G +P Sbjct: 16 TLSFEVGKYAKQANGAVMVKYGDTTVLSTATGSKEPKDLPFFPLTVNYEERLYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+I R +R + Q+I + + A Sbjct: 75 --GGFIKRE---GRPSDNAVLTSRLIDRPIRPLFPDGYRNDVQVISIVMSSDQNASSEMA 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL + D G +A ++ G + G I++ + + D+D Sbjct: 130 AMIGSSMAL-----SISDIP--------FGGPIAGVTVGRVNGEFIINPTTTQMADSDID 176 Query: 189 ANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE AE+ +D A+L D I L+ Q+++I+ Sbjct: 177 LIVAGTKDAVNMVE--AGAEQVP-EEDMMDAIL-FGHDEIKRLVAFQEEIIA 224 >gi|152993469|ref|YP_001359190.1| polynucleotide phosphorylase/polyadenylase [Sulfurovum sp. NBC37-1] gi|187611305|sp|A6QBH4|PNP_SULNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151425330|dbj|BAF72833.1| polyribonucleotide nucleotidyltransferase [Sulfurovum sp. NBC37-1] Length = 729 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 53/246 (21%), Positives = 98/246 (39%), Gaps = 34/246 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54 +R GR +++R I++ + GSCL G T L TATL +K + +NT Sbjct: 344 IRADGRGLDEVRPITIETNILPSVHGSCLFTRGQTQALVTATLGDKKDAQMFELITDKNT 403 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y G V G G R + RAL V+ ++ G+ +++ Sbjct: 404 QSENFMVHYNF----PGYSVGEAKFIGAPGRRELGHGNLAKRALEPVIPINYDGTIRLV- 458 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 +V++++G + A I G +AL M + + V G A+ + Sbjct: 459 -SEVLESNGSSSMATICGGALALRAAEVDMVELVAGIAMGLVTDGERVAV---------L 508 Query: 175 VDLDYGEDSTIDVDANFVMTDSG-------------HIVEVQGSAERATFSQDHFFAMLN 221 D+ ED D+D T +G ++ ++ + E+A +DH ++ Sbjct: 509 TDIMGLEDHDGDMDFKIAGTRNGITALQMDIKLGGIDLITLKVALEKAAQGKDHILDLME 568 Query: 222 LAKDRI 227 A+ ++ Sbjct: 569 EAEKKM 574 >gi|223945461|gb|ACN26814.1| unknown [Zea mays] Length = 306 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 51/262 (19%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R+ + R ++ A GS LV+ GDT +L + LE P G ++ Sbjct: 39 VRIDARRLREARTTTVALGAVSSAHGSALVRVGDTAMLASVKLEVMSPSA-EYPDEGSVS 97 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV---------DLSALGSRQ 111 E+ M P + + GRS E+ +I +AL V+ DL + + Sbjct: 98 VEFHMPPICS---------PLVRPGRSAEVAPVISKALEDVLMSSRMLNLKDLCLITGKA 148 Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHME------------------DCSNK 150 +D + ADG AA+ A A H+E D NK Sbjct: 149 SWLAYLDIYCLNADGSLFDAALISAVAAF----THLEIPLVSVGDDGKLFTVGGNDGKNK 204 Query: 151 FQLSQVLKGHVA------AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204 F+L K + +++C + G + D E+S I+ V+ S +V +Q Sbjct: 205 FELVNREKRKLTLGDIPLSLTCALHKGSILTDPTSEEESIIETYVTVVVDSSDRLVSLQK 264 Query: 205 SAERATFSQDHFFAMLNLAKDR 226 T S ++LAK+R Sbjct: 265 VGGTVT-SMATIKECISLAKER 285 >gi|311253305|ref|XP_003125500.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Sus scrofa] Length = 243 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 25/244 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++R+I V A+GS ++ G+T L + + Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGRAPLPDRALVNC 72 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QIIIDCDVI 119 +Y STG R +R G R S E+ + +A + + L+ L R QI I V+ Sbjct: 73 QYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQAFEAAI-LTQLHPRSQIDIYVQVL 126 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG A + A +A+ D M D V A S G + G + DL + Sbjct: 127 QADGGIYAACVNVATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 173 Query: 180 GEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ A ++ SG I ++ A +DH +L A D+ + V+ Sbjct: 174 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTVLDRVV 230 Query: 239 SNEV 242 V Sbjct: 231 RQHV 234 >gi|240104092|ref|YP_002960401.1| exosome complex RNA-binding protein Rrp42 [Thermococcus gammatolerans EJ3] gi|259645408|sp|C5A2B8|ECX2_THEGJ RecName: Full=Probable exosome complex exonuclease 2 gi|239911646|gb|ACS34537.1| 3'-5' exoribonuclease, exosome complex exonuclease 2, Rrp42p-like protein (Rrp42p) [Thermococcus gammatolerans EJ3] Length = 273 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 23/248 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + R+I + + AEGS V+ G T +L ++ P + G +T Sbjct: 24 RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQII 113 ++P ++ G R+ E+ R+I R +R V+L L R + Sbjct: 83 NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQ---VLKGHVA-AIS 165 ID V+ DG A A AL +++ E+ +L + + HV ++ Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEIIKLDEYEPLPVKHVPIPVT 197 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + IVD + E++ +D ++GHI VQ E +F + ++ A Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQ-KGEGGSFKLEEVMYAIDTALK 256 Query: 226 RIADLIKL 233 + +L K+ Sbjct: 257 KADELRKI 264 >gi|297811589|ref|XP_002873678.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp. lyrata] gi|297319515|gb|EFH49937.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp. lyrata] Length = 992 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 26/186 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 R+ GR +++R I GS L GDT +L T TL + + + K Sbjct: 363 FRVDGRHLDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPGEAQSLDSLVGPPK 422 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P T KR ++ R+ G + +AL +V+ + I+ Sbjct: 423 KRFML-HYSFPPYCTNEVGKRGGLNRREVGHGT----LAEKALLAVLPPEEAFPYTVRIN 477 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V+ +DG T A++ G +AL D L+ HVA +S G++ V Sbjct: 478 SEVMSSDGSTSMASVCGGSMALMDA-------------GIPLRAHVAGVSVGLITD---V 521 Query: 176 DLDYGE 181 D GE Sbjct: 522 DPSSGE 527 >gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314] gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314] gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314] gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314] Length = 240 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 27/188 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57 +R+ GR+ N++R R++ + ++GS V+ G+T ++ T++ + +R+ +H Sbjct: 9 LRIDGRRWNELRRFEC--RINTHPNSSDGSSYVEQGNTKVM--CTVQGPIEPALRSQQHS 64 Query: 58 W---ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 I + ST R KR R R E++ + + V ++ I+I Sbjct: 65 ERANIEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVI 120 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 + V+ DGG A I +AL D M D +V+ +SCG+ P+ Sbjct: 121 NVQVLCQDGGMLAAVINSITLALIDAGISMYD-------------YVSGVSCGLYDQTPL 167 Query: 175 VDLDYGED 182 +D++ E+ Sbjct: 168 LDVNNLEE 175 >gi|312143658|ref|YP_003995104.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp. 'sapolanicus'] gi|311904309|gb|ADQ14750.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp. 'sapolanicus'] Length = 696 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 33/228 (14%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRST 70 T +++K A GS +V+ GD+ +L TAT++E P+ + + + G +P Sbjct: 17 TGKLAKQANGSVMVRSGDSQVLVTATMDEPRPGMNYFPLMVNYEERVYA---IGKIP--- 70 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G ++RE GR + R+I R++R + Q++ + D A+ Sbjct: 71 GGVLRRE---GRPRDEATLAARVIDRSIRPLFPDGYRKDVQVVATILSVDDDHDPEMLAL 127 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 GA +AL +S + G + + G++ G I++ + E ++D Sbjct: 128 NGASIAL--------------TISDIPFDGPIGGVKVGLVDGEIIINPNEEERENSELDL 173 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 V I+ V+ SA + ++LA I +IK+QK + Sbjct: 174 -VVAGSKDAIMMVEASANEV--EEAVILEAMDLAHQEIQKMIKIQKTI 218 >gi|332654600|ref|ZP_08420343.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae bacterium D16] gi|332516564|gb|EGJ46170.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae bacterium D16] Length = 716 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 25/174 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKV-PMWIRNTK 55 R+ GR +N++R ++ V GS L G T +L+ TL +K+ +W + K Sbjct: 322 RVDGRAKNEIRPLAAEVGVLPRVHGSGLFTRGQTQVLSVCTLNTLAACQKLDTIWEEDEK 381 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G + + R+ G +R + L SV + I + Sbjct: 382 R--YMHHYNFPPYSVGEARAPRSTNRREYGHGALAERALVPVLPSVEEF----PYAIRVV 435 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V+ ++G T +I G+ +AL D +K VA ISCG++ Sbjct: 436 SEVLSSNGSTSQGSICGSTLALMDA-------------GVPIKAPVAGISCGLI 476 >gi|33863644|ref|NP_895204.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9313] gi|81577177|sp|Q7V606|PNP_PROMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33635227|emb|CAE21552.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 723 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 32/236 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS +++ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRYAPQAGGSVMMECGDTAVLVTATRSTGREGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGSFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+TGA +A S +G +AA+ G+L +++ Y E Sbjct: 124 ADVLAVTGASMA-------------TLLASIPFQGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + Q ++ + + +LIK Q+ ++ + Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LPQGDVIEAIDFGYEAVCELIKAQQTILKD 223 >gi|301166788|emb|CBW26365.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax marinus SJ] Length = 709 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R++GR ++REI + ++ GS L G+T ++ T+ EK+ IR T+ Sbjct: 323 RIAGRGMTEVREIETEANLLEHVHGSSLFTRGETQVMAAVTIGGKHGEKMEDSIRGTEFQ 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R+ G +R + + S + A +R + C+ Sbjct: 383 KFYLHYNFPPFSVGEARGVRGVGRRELGHGNLAERAVKAVMPSEEEF-AYTTRVV---CE 438 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 V++++G + ++ A +AL D Sbjct: 439 VMESNGSSSMGSVCSASMALMDA 461 >gi|312080640|ref|XP_003142686.1| hypothetical protein LOAG_07104 [Loa loa] gi|307762153|gb|EFO21387.1| hypothetical protein LOAG_07104 [Loa loa] Length = 521 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 17/144 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++ RE+ + + GSCLV G+T +L + P +R G + Sbjct: 151 RIDGRKCDEFREVKV---IVGSELGSCLVMLGETKVLAQVSCSLVEPSTVRGN-MGTVEV 206 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QII 113 M P ++ + GR G + E+ R++ R+ V+DL +L R QI Sbjct: 207 HVDMSPMASPD-----YEDGRLGSKGLELMRILELLYRNSGVIDLESLCLRTFKQVWQIR 261 Query: 114 IDCDVIQADGGTRTAAITGAWVAL 137 ID V+ +DG A + AL Sbjct: 262 IDVHVLASDGSLVDCACIASLTAL 285 >gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis] gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis] Length = 268 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 5/136 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +++R + L V A+GS ++ +T ++ + P + G +T Sbjct: 36 RQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTC 95 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P S R K Q +E ++ +AL V L Q+ I V++ Sbjct: 96 EFKFAPFSCIYRRKH-----IQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLEN 150 Query: 122 DGGTRTAAITGAWVAL 137 DG +A I A VAL Sbjct: 151 DGSALSAGIICASVAL 166 >gi|148263963|ref|YP_001230669.1| polynucleotide phosphorylase/polyadenylase [Geobacter uraniireducens Rf4] gi|187610269|sp|A5GF91|PNP_GEOUR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146397463|gb|ABQ26096.1| Polyribonucleotide nucleotidyltransferase [Geobacter uraniireducens Rf4] Length = 696 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 38/221 (17%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R+I+ + A GS L G+T L ATL E+++ +K Sbjct: 312 RIDGRDTKTIRQITTEVSLLPRAHGSALFTRGETQSLVAATLGTSIDEQRIDSLFGESKK 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G R R+ G +R + R L D I I Sbjct: 372 RFLL-HYNFPPFSVGETSFRLGPGRREIGHGMLAERALARVLPKHDDF----PYTIRIVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A++ G +++ D +K VA I+ G+ Sbjct: 427 DILESNGSSSMASVCGGSMSMMDA-------------GIPIKAPVAGIAMGL-------- 465 Query: 177 LDYGEDSTIDVDANFVMTDSGHI----VEVQGSAERATFSQ 213 + GED I D ++ D H+ +V G+AE T Q Sbjct: 466 IKEGEDFAILSD---ILGDEDHLGDMDFKVAGTAEGVTALQ 503 >gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans] gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans] Length = 245 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 20/188 (10%) Query: 1 MRLSGRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG 57 +R+ GR+ N++R + + + ++GS ++ G+ ++T T E K+ + TK Sbjct: 12 LRVDGRRWNELRRLECSINTHANASDGSSYLEQGNNKVITLVTGPQEPKLRSQMNVTKAT 71 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A L + ++++R S + R E+Q + R V L QI I Sbjct: 72 ISVA----LNITRFSKIERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTQIEIQIH 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+Q DGG ++ I G +AL D M D +++ +S G+ P++DL Sbjct: 128 VLQQDGGLMSSLINGITLALIDAGIAMYD-------------YISGVSIGLYDTTPLLDL 174 Query: 178 DYGEDSTI 185 + E++ + Sbjct: 175 NSVEENAM 182 >gi|150388833|ref|YP_001318882.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470925|sp|A6TM05|PNP2_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 2; AltName: Full=Polynucleotide phosphorylase 2; Short=PNPase 2 gi|149948695|gb|ABR47223.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 702 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 23/162 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74 +V++ A+GSC++K+GDT +L TA +E + + + + G +P G + Sbjct: 20 KVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKIP---GGFI 76 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE+ R ++ R+I R +R + Q+I + D +A+ G+ Sbjct: 77 KRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCPPDISAMIGSS 133 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +AL SN G A++S GM+ G IV+ Sbjct: 134 IAL--------SVSN-----IPFMGPTASVSVGMIDGKYIVN 162 >gi|52550471|gb|AAU84320.1| 3'-5' exoribonuclease [uncultured archaeon GZfos9D1] Length = 257 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 8/108 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + REIS+ R V K AEGS VK GDT +L +E P + G I Sbjct: 23 REDGRGFREYREISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL 107 ++P ++ K E SG S ++ R++ R +R +DL L Sbjct: 82 NAELVPLAS---PKFE--SGPPNENSIQLARVVDRGIRGSETIDLDKL 124 >gi|319944048|ref|ZP_08018328.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC 51599] gi|319742809|gb|EFV95216.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC 51599] Length = 704 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ V A GS L G+T L ATL +E++ I Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVVATLGTARDEQIIDAITGEYRE 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y M P +TG + R+ G R+ RA+ ++V + I + + Sbjct: 375 RFMMQYNMPPYATGETGRIGTPKRREVGHG----RLAKRAITALVPSQEDFAYSIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ G +AL D +E HVA I+ G++ Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVER-------------HVAGIAMGLI 469 >gi|226504202|ref|NP_001146469.1| hypothetical protein LOC100280057 [Zea mays] gi|219887423|gb|ACL54086.1| unknown [Zea mays] Length = 240 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 60/257 (23%), Positives = 99/257 (38%), Gaps = 48/257 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R + T A GS GDT +L + K G Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAA----------VYGPKSG---T 53 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 G P V + +G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 54 RKGENPEKASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 113 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGML-CGYPIVDLDY 179 DG + AI + AL + + H+A AISCG++ G I+D Sbjct: 114 DGSLMSCAINASCAAL--------------AFAGIPMKHLAVAISCGVMDNGVVILDTSR 159 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAER--------------ATFSQDHFFAMLN---L 222 E+ A+ V +S VE + + +R S+D +F + + Sbjct: 160 AEEQQARSFAHLVFPNSRKSVESKDTTQRDEESERGLITCITHGAMSEDDYFNCIERGVM 219 Query: 223 AKDRIADLIK--LQKDV 237 A RI+D ++ LQK+ Sbjct: 220 ASSRISDFMRKTLQKEA 236 >gi|193214790|ref|YP_001995989.1| polynucleotide phosphorylase/polyadenylase [Chloroherpeton thalassium ATCC 35110] gi|226702635|sp|B3QY14|PNP_CHLT3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193088267|gb|ACF13542.1| Polyribonucleotide nucleotidyltransferase [Chloroherpeton thalassium ATCC 35110] Length = 729 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ +++R IS+ + A GS L G+T L T TL K + +T Sbjct: 332 RLDGRRLDEIRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQLTDTLFDDADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + +VS R+ G + RA++ VV + + D Sbjct: 392 RFMLHYNFPPFSVGEVGRMGSVSRREIGHGN----LAERAIKKVVPAENAFPYTMRVVSD 447 Query: 118 VIQADGGTRTAAITGAWVALHD 139 +++++G + A++ G +A D Sbjct: 448 ILESNGSSSMASVCGGTLAAMD 469 >gi|150388828|ref|YP_001318877.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470924|sp|A6TM00|PNP1_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 1; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1 gi|149948690|gb|ABR47218.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 702 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 23/162 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74 +V++ A+GSC++K+GDT +L TA +E + + + + G +P G + Sbjct: 20 KVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKIP---GGFI 76 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE+ R ++ R+I R +R + Q+I + D +A+ G+ Sbjct: 77 KRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCPPDISAMIGSS 133 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +AL SN G A++S GM+ G IV+ Sbjct: 134 IAL--------SVSN-----IPFMGPTASVSVGMIDGEYIVN 162 >gi|114566439|ref|YP_753593.1| polynucleotide phosphorylase/polyadenylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318489|sp|Q0AYI2|PNP_SYNWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114337374|gb|ABI68222.1| Polyribonucleotide nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 703 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 32/227 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71 +V++ A G+ L+++GDT +L TAT ++ P+ + + + G +P G Sbjct: 21 QVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFPLTVDYEEKQYAV---GKIP---G 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE GR ++ R+I R +R + ++ ++ D AIT Sbjct: 75 GFIKRE---GRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEKDNAPDVTAIT 131 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191 GA VAL + D G VAA+ G++ G I++ + D+ Sbjct: 132 GASVAL-----SISDIP--------FAGPVAAVIVGLVDGELIINPTVEQHQKSDLHLAV 178 Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I+ V+G A ++ + A + I ++ Q+++I Sbjct: 179 AGTKEA-IMMVEGGANEV--PEETMRDAIFFAHEEIKKIVDFQENII 222 >gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia] gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia] Length = 246 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 10/147 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + N I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAK---GNQTESVIN 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +S E + + +AL + + QI I +V+Q Sbjct: 70 CQYSQATFSTAERKNRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 125 Query: 121 ADGGTRTAAITGAWVALHD---CLQHM 144 DG A+ A +AL D CL Sbjct: 126 DDGANYAVALNAATLALIDAGICLNEF 152 >gi|195952523|ref|YP_002120813.1| polynucleotide phosphorylase/polyadenylase [Hydrogenobaculum sp. Y04AAS1] gi|226702655|sp|B4U6R7|PNP_HYDS0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|195932135|gb|ACG56835.1| Polyribonucleotide nucleotidyltransferase [Hydrogenobaculum sp. Y04AAS1] Length = 703 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 85/233 (36%), Gaps = 27/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56 R+ GR+E +R I++ + GS + G T L T TL K V Sbjct: 310 RIDGRKETDIRPITIEMHPLERPHGSAVFTRGQTQALATVTLAPKDEAQLVETIFEGETF 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG R+ G +R + L D + I + Sbjct: 370 KRFMLHYNFPPFSTGEARPWGPPRRREIGHGALAERALEPLLAKEEDFPYI----IRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 D+++++G + A + +AL D M K HVA I+ G++ Sbjct: 426 DILESNGSSSMATVCAGSLALFDAGVPM-------------KKHVAGIAMGLIKDGDNFV 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + D+ ED D+D T G + VQ + S+D LN AK+ Sbjct: 473 ILTDILGDEDHLGDMDFKVAGTRDG-VTSVQMDIKIKGLSKDIMIKALNQAKE 524 >gi|52549122|gb|AAU82971.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos24D9] Length = 260 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 52/233 (22%), Positives = 94/233 (40%), Gaps = 15/233 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R+I + R + K A+GS V+ GDT +L +E P + G + Sbjct: 23 RADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGAP-FPDTPNKGILMT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ E SG S E+ R++ R +R +DL L G + + Sbjct: 82 NAELVPLAS-----PEFESGPPNEDSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID + DG AA GA +L + E + + ++ A++ + G Sbjct: 137 IDIHTLDNDGNLVDAAALGAITSLLNVTIPYERYGLTGEDTLQIRDTPVAVTVVEIGGNL 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +VD + E+S + G I +Q S +++ M+ + ++ Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSGSTG-LTEEKIVKMIEIGIEK 248 >gi|257463538|ref|ZP_05627931.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D12] Length = 743 Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 95/250 (38%), Gaps = 38/250 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TATL +E++ + + Sbjct: 360 RVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKEDEQLVDNLEKEYYK 419 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + RALR V+ I + D Sbjct: 420 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 475 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL +K HVA I+ G++ Sbjct: 476 ITESNGSSSQASICGGSLAL-------------MSAGVPIKEHVAGIAMGLIKEGEEFTV 522 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHI-----VEVQGSAE---RATFSQDH-----FFAML 220 + D+ ED D+D T SG +++ G E R SQ H ++ Sbjct: 523 LTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHVARQQILEVM 582 Query: 221 NLAKDRIADL 230 N A ADL Sbjct: 583 NAAISSPADL 592 >gi|118594124|ref|ZP_01551471.1| polynucleotide phosphorylase/polyadenylase [Methylophilales bacterium HTCC2181] gi|118439902|gb|EAV46529.1| polynucleotide phosphorylase/polyadenylase [Methylophilales bacterium HTCC2181] Length = 716 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 26/242 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T + ATL +E++ ++ Sbjct: 324 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQAIVVATLGTGRDEQIIDALQGEFKD 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P +TG + R+ G + +R + AL S D I + + Sbjct: 384 RFMLHYNFPPYATGETGRVGTPKRREIGHGKLAKRGLSAALPSKEDF----DYTIRLVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +A+ D M D HVA I+ G++ Sbjct: 440 ITESNGSSSMASICGGTMAMMDAGVPMTD-------------HVAGIAMGLIKEDNRVAV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD+G I +Q + + + L+ A++ I ++K+ Sbjct: 487 LTDILGDEDHLGDMDFKVAGTDNG-ITALQMDIKITGITSEIMQVALSQAREGIDHILKI 545 Query: 234 QK 235 K Sbjct: 546 MK 547 >gi|24584046|ref|NP_609618.2| Ski6 [Drosophila melanogaster] gi|7298022|gb|AAF53263.1| Ski6 [Drosophila melanogaster] gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster] Length = 246 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 12/148 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59 +RL GR+ +++R I V + +GS ++ G+T +L P + N I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVY----GPHQAKGNQTESVI 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y ST R R R +S E + + +AL + + QI I +V+ Sbjct: 69 NCQYSQATFSTAERKNRP----RGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVL 124 Query: 120 QADGGTRTAAITGAWVALHD---CLQHM 144 Q DG A+ A +AL D CL Sbjct: 125 QDDGANYAVALNAATLALIDAGICLNEF 152 >gi|34496921|ref|NP_901136.1| polynucleotide phosphorylase/polyadenylase [Chromobacterium violaceum ATCC 12472] gi|81656248|sp|Q7NY10|PNP_CHRVO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|34102777|gb|AAQ59141.1| polyribonucleotide nucleotidyltransferase [Chromobacterium violaceum ATCC 12472] Length = 722 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R IS+ V GS L G+T L ATL K I + G T Sbjct: 324 RIDGRDTRTVRPISIRNNVLPRTHGSALFTRGETQALVVATLGTKQDEQIIDALAGEYTE 383 Query: 62 ----EYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P STG +GR G + +EI R+ RAL +V+ + + Sbjct: 384 RFMLHYNFPPYSTGE-------AGRMGPPKRREIGHGRLAKRALVAVLPPEDEFGYSMRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G C + LK HVA I+ G++ Sbjct: 437 VSEITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 479 >gi|307634882|gb|ADI84427.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens KN400] Length = 740 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 27/205 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R IS+ + A GS L G+T L +TL E+++ T+ Sbjct: 356 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRK 415 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G R A R+ G +R + R + D I I Sbjct: 416 RFLL-HYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDF----PYTIRIVS 470 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYP 173 D+++++G + A + G +A+ D +K VA I+ G++ G Sbjct: 471 DILESNGSSSMATVCGGALAMMDA-------------GVPIKAPVAGIAMGLIKEGEGIA 517 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197 I+ D+ ED D+D T++G Sbjct: 518 ILSDILGDEDHLGDMDFKVAGTEAG 542 >gi|154346012|ref|XP_001568943.1| exosome complex exonuclease RRP41 [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis MHOM/BR/75/M2904] Length = 246 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 20/183 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--W 58 +RL GR+ + R + + +GSC + G + + + + + + KH Sbjct: 13 LRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCAS-IFGPRESLHKQEAKHDKVL 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +T E + + +R + R+ S++I + + RSV+ LS + QI I +V Sbjct: 72 VTCEVAVAAFAGESRRNPQ----RRSKLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DG + A I A +AL D M D V IS G+L + ++DL Sbjct: 128 LQQDGNEKVACINAACLALVDANVAMRDV-------------VCCISVGLLDEHMLIDLA 174 Query: 179 YGE 181 E Sbjct: 175 NDE 177 >gi|15644097|ref|NP_229146.1| polynucleotide phosphorylase/polyadenylase [Thermotoga maritima MSB8] gi|170289273|ref|YP_001739511.1| polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2] gi|81553535|sp|Q9X166|PNP_THEMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704827|sp|B1LBY0|PNP_THESQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|4981905|gb|AAD36416.1|AE001789_1 polynucleotide phosphorylase [Thermotoga maritima MSB8] gi|170176776|gb|ACB09828.1| Polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2] Length = 708 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 34/230 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71 +V+K + GS LV+FGDT +L TA + +K VP+ + + + G +P G Sbjct: 19 KVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQERFYAA---GKIP---G 72 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE G+ + R+I R +R + Q+I+ + + I Sbjct: 73 GFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVPPDVVGIF 129 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A +AL+ +S++ +G VA I G G + L ED + Sbjct: 130 AASLALN--------------VSKIPFEGIVAGIRVGYRDGQ-FIALPSEEDIEKGLMDI 174 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 V + V+G A+ T ++ L A I +L+ Q++++S Sbjct: 175 TVAGTKDAVTMVEGEAKEVT--EEDMVKALRFAHSVIKELVDFQEEILSE 222 >gi|86747731|ref|YP_484227.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris HaA2] gi|123099194|sp|Q2J2J4|PNP_RHOP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|86570759|gb|ABD05316.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris HaA2] Length = 718 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 24/231 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T L TL +E+ + T Sbjct: 316 RIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+R V+ I + Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIRPVLPPHHEFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ GA +AL D ++ + + +L+G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T+ G I +Q + A +++ L AKD Sbjct: 485 -----DEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKD 529 >gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1] Length = 240 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 27/188 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57 +R+ GR+ N++R R++ + ++GS V+ G+T ++ T++ + +R+ +H Sbjct: 9 LRIDGRRWNELRRFEC--RINTHPNSSDGSSYVEQGNTKVM--CTVQGPIEPALRSQQHS 64 Query: 58 W---ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 I + ST R KR R R E++ + + V ++ I+I Sbjct: 65 ERANIEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVI 120 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 + V+ DGG A I +AL D M D +V+ +SCG+ P+ Sbjct: 121 NVQVLCQDGGMLAAVINSITLALIDAGISMYD-------------YVSGVSCGVYDQTPL 167 Query: 175 VDLDYGED 182 +D++ E+ Sbjct: 168 LDVNNLEE 175 >gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster] Length = 246 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 10/147 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + N I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAK---GNQTESVIN 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +S E + + +AL + + QI I +V+Q Sbjct: 70 CQYSQATFSTAERKNRP----RGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQ 125 Query: 121 ADGGTRTAAITGAWVALHD---CLQHM 144 DG A+ A +AL D CL Sbjct: 126 DDGANYAVALNAATLALIDAGICLNEF 152 >gi|88607778|ref|YP_505346.1| polynucleotide phosphorylase/polyadenylase [Anaplasma phagocytophilum HZ] gi|123494955|sp|Q2GJV5|PNP_ANAPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88598841|gb|ABD44311.1| polyribonucleotide nucleotidyltransferase [Anaplasma phagocytophilum HZ] Length = 838 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 25/174 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +Q+R I + + A GS L GDT L L +E++ K Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115 Y P + G EA + R GR +EI ++ RA+ V+ A I + Sbjct: 383 RFLLHYNFPPYAVG-----EASALRPPGR-REIGHGKLAWRAIHPVLPSKADFPYTIRVV 436 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ ++DG + A + GA +AL D LK VA I+ G++ Sbjct: 437 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 477 >gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter thermautotrophicus str. Delta H] gi|29336572|sp|O26778|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2 gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 271 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 24/247 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ R+IS+ V AEGS VK G+T ++ + P + + G I Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113 +LP ++ G RS E+ R++ R +R ++DL L GS+ + Sbjct: 84 NSELLPMASPT-----FEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLF 138 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC------LQHMEDCSNKFQLSQVLKGHVAAISCG 167 +D +I DG AA+ AL D ++ E N+ ++ Q L + A+ C Sbjct: 139 LDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKM-QPLPVNRKALMCT 197 Query: 168 ML-CGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 G IV D E+ + + +T+ G I +Q E ++D +++A + Sbjct: 198 FAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGE-GPLTRDDVLKAVSIAVE 256 Query: 226 RIADLIK 232 ++ LI+ Sbjct: 257 KVPQLIE 263 >gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter oceani DSM 16646] gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter oceani DSM 16646] Length = 702 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 40/235 (17%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRS 69 T ++++ A G+ L ++GDT +L TAT ++ +P+ + + + G +P Sbjct: 17 TGKLAQQANGAVLARYGDTVVLVTATASKEPREGVDFLPLTVDYEERLYAV---GKIP-- 71 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT-- 127 G +KRE G+ ++ R+I R LR + QII ++ D G Sbjct: 72 -GGFIKRE---GKPSEKAILSARVIDRPLRPLFPKGFRNDIQII--ATILSVDQGNTPDV 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTI 185 AI GA +AL C+ + +G V A+S G++ G I++ ++ E S + Sbjct: 126 VAINGASIAL--CISDIP-----------FEGPVGAVSVGLVDGNFIINPTVEQYEKSRL 172 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + V I+ V+ A+ T ++ + + I ++K Q+++I+ Sbjct: 173 RL---VVAGTKDAILMVEAGADEVT--EEEMINAILFGHEEIKKIVKFQEEIIAK 222 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ ++R IS + GS L G T +LT ATL + ++ + + Sbjct: 310 IRPDGRKSTEIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILDGLELEES 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG R+ G + RAL ++ I + Sbjct: 370 KRFMHHYNFPPYSTGETRMLRGPGRREIGHGA----LAERALEPMIPPEETFPYTIRLVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V+ ++G T A++ G+ +AL D +K VA I+ G++ Sbjct: 426 EVLSSNGSTSMASVCGSTLALMDA-------------GVPIKAPVAGIAMGLI 465 >gi|226494746|ref|NP_001148711.1| exosome complex exonuclease RRP43 [Zea mays] gi|195621578|gb|ACG32619.1| exosome complex exonuclease RRP43 [Zea mays] Length = 306 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 51/262 (19%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R+ + R ++ A GS LV+ GDT +L + LE P G ++ Sbjct: 39 VRIDARRLREARTTTVALGAVSSAHGSALVRVGDTAMLASVKLEVMSPSA-EYPDEGSVS 97 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV---------DLSALGSRQ 111 E+ M P + + GRS E+ +I +AL V+ DL + + Sbjct: 98 VEFHMPPICS---------PLVRPGRSAEVAPVISKALEDVLMSSRMLNLKDLCLITGKA 148 Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHME------------------DCSNK 150 +D + ADG AA+ A A H+E D NK Sbjct: 149 SWLAYLDIYCLNADGSLFDAALISAVSAF----THLEIPLVSVGDDGKLFTVGGNDGKNK 204 Query: 151 FQLSQVLKGHVA------AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204 F+L K + +++C + G + D E+S I+ V+ S +V +Q Sbjct: 205 FELVNREKRKLTLGDIPLSLTCALHKGCILTDPTSEEESIIETYVTVVVDSSDRLVSLQK 264 Query: 205 SAERATFSQDHFFAMLNLAKDR 226 T S ++LAK+R Sbjct: 265 VGGTVT-SMATIKECISLAKER 285 >gi|171912768|ref|ZP_02928238.1| polynucleotide phosphorylase/polyadenylase [Verrucomicrobium spinosum DSM 4136] Length = 707 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 97/227 (42%), Gaps = 30/227 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPRSTGN 72 T +++K A+G+ V+ GDT ++ TA KV + + ++ A G P G Sbjct: 19 TGKLAKLADGAVTVRQGDTIVIVTAVSATKVKEGQDFFPLSVEYKEKAAAAGKFP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--AAI 130 KRE GR + RM R LR + QI+ ++ ADG +I Sbjct: 76 YFKRE---GRPTEKEILTCRMTDRPLRPLFPKGYYYDTQIV--ALLLSADGENDADIISI 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL C+ + G V A+ G + G +++ + + + D+D Sbjct: 131 NGASAAL--CVSDIP-----------FAGPVGAVRVGRVNGQFVLNPTHSQRAKSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +V S ++ ++G+A + F L A++ + L+ +Q+++ Sbjct: 178 YVGNKS-EVIMIEGAANE--LPEAEFIKALAFAQEHVQVLVAVQEEL 221 >gi|289548545|ref|YP_003473533.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM 14484] gi|289182162|gb|ADC89406.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM 14484] Length = 704 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 44/230 (19%) Query: 21 SKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWI--RNTKHGWITAEYGMLPRSTG 71 +K A+G+ +V+ GDT +L TA + E+ VP+ + R W G +P G Sbjct: 22 AKQADGAVVVRQGDTAVLVTAVMSEEPQTNVDFVPLTVDYREQSSAW-----GKIP---G 73 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TRTAA 129 +KRE G+ R + R+I R +R + S +++ + AD A Sbjct: 74 GFIKRE---GKPTDREILVSRVIDRPIRPLFPEGF--SHDVVVTALTLSADDKYDPDVLA 128 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ITGA ALH +S++ +G +A + + G + + Y E D++ Sbjct: 129 ITGASAALH--------------ISRIPFEGPIAGVRICRVEGRLVANPTYEERQKADLE 174 Query: 189 ANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 VM S IV V+G A+ ++ L + I DL++ Q+++ Sbjct: 175 --IVMAGSKDAIVMVEGGAKEV--DEEVLTEALYFGLEVIQDLLRAQEEL 220 >gi|58584280|ref|YP_197853.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75498164|sp|Q5GTR3|PNP_WOLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|58418596|gb|AAW70611.1| Polyribonucleotide nucleotidyltransferase, pnp [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 755 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 20/135 (14%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 R +SL T ++++ A+GS +V +GDT +L T ++K +P+ ++ +I Y Sbjct: 14 RTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKKEEIVDFLPLNVQ-----FIAKSYA 68 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD-- 122 M R G KRE G+ R I R+I R++R + L +I I C+++ D Sbjct: 69 M-GRIPGGFFKRE---GKPSDRETLISRVIDRSIRPLF-LEGFHD-EISIVCNLLTYDTV 122 Query: 123 GGTRTAAITGAWVAL 137 A+ GA AL Sbjct: 123 NPPEVPALIGAVAAL 137 >gi|282882000|ref|ZP_06290641.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis 315-B] gi|281298030|gb|EFA90485.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis 315-B] Length = 722 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 23/174 (13%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74 +V++ A G CLV++GDT +L TAT E + + + + G +P G + Sbjct: 20 KVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMYAVGKIP---GGFI 76 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE GR ++ R+I R LR + QI+ + D A+ G+ Sbjct: 77 KRE---GRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDIPAMIGSS 133 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 +AL CL + G ++ G++ G +++ + + D++ Sbjct: 134 IAL--CLSDIP-----------FDGPTGSVQVGLVDGEYVINPNQEQREKTDIN 174 >gi|57095694|ref|XP_539207.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 1 [Canis familiaris] Length = 245 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 22/162 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR+ ++R+I V A+GS ++ G+T L P IR ++ Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113 + +Y STG R +R G R S E+ + + + + L+ L R QI Sbjct: 69 RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLHLRQTFEAAI-LTQLHPRSQID 122 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED----CSNKF 151 I V+QADGGT A + A +A+ D M D CS F Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGF 164 >gi|300813727|ref|ZP_07094047.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512184|gb|EFK39364.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 722 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 23/174 (13%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74 +V++ A G CLV++GDT +L TAT E + + + + G +P G + Sbjct: 20 KVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMYAVGKIP---GGFI 76 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE GR ++ R+I R LR + QI+ + D A+ G+ Sbjct: 77 KRE---GRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDIPAMIGSS 133 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 +AL CL + G ++ G++ G +++ + + D++ Sbjct: 134 IAL--CLSDIP-----------FDGPTGSVQVGLVDGEYVINPNQEQREKTDIN 174 >gi|242065778|ref|XP_002454178.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor] gi|241934009|gb|EES07154.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor] Length = 983 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 21/174 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GRQ +++R + GS L GDT +L T TL ++ G T Sbjct: 379 LRVDGRQLDEVRPLYCESNTYPVLHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 438 Query: 61 A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + + ++ Sbjct: 439 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPESDFPYAVRVNS 494 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 +V+ +DG T A++ G +AL D ++ HVA +S G++ Sbjct: 495 EVMASDGSTSMASVCGGSMALMDA-------------GIPVREHVAGVSVGLVS 535 >gi|194220716|ref|XP_001496138.2| PREDICTED: similar to Polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor (PNPase 1) (Polynucleotide phosphorylase-like protein) (PNPase old-35) (3-5 RNA exonuclease OLD35) [Equus caballus] Length = 784 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+GS +V+ GDT ++ TA + K +P+ + + A G +P N Sbjct: 62 KLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFLPLVVDYRQKA---AAAGRIPT---N 115 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +EI R+I R++R + Q++ C+++ DG Sbjct: 116 YLRREI-----GSSDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEPDVL 168 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA VAL LS + G V A+ GM+ G +V+ E S+ + Sbjct: 169 AINGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTL 214 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234 >gi|47847669|dbj|BAD21450.1| putative polyribonucleotide nucleotidyltransferase [Oryza sativa Japonica Group] Length = 982 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 21/173 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GRQ +++R + GS L GDT +L T TL ++ G T Sbjct: 378 LRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 437 Query: 61 A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + ++ Sbjct: 438 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPEGEFPYTVRVNS 493 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V+ +DG T A++ G +AL D ++ HVA +S G++ Sbjct: 494 EVMASDGSTSMASVCGGSMALMDA-------------GIPVREHVAGVSVGLV 533 >gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum seropedicae SmR1] gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 712 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 29/176 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R IS+ V GS L G+T L ATL E+K+ + Sbjct: 320 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDGLLGEYSD 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113 ++ Y M P +TG +GR G + +EI R+ RAL + + + S + Sbjct: 380 RFML-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALIAALPAADEFSYSVR 431 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 432 LVSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLI 474 >gi|261749590|ref|YP_003257276.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497683|gb|ACX84133.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 710 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 12/145 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +RL GR+ Q+R I GS L G+T LTT TL K+ I + Sbjct: 323 IRLDGRKSQQIRPIWSIVDYLPEVHGSALFSRGETQSLTTVTLGSSLDANKIDNVIMENQ 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P STG VS R+ G Q RAL++V+ + + +++ Sbjct: 383 EKF-YLHYNFPPFSTGEIRPIRGVSRREIGHGNLAQ----RALKNVIPDNNPYTIRVV-- 435 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A + A +AL D Sbjct: 436 SDILESNGSSSMATVCAASLALMDA 460 >gi|255034850|ref|YP_003085471.1| polynucleotide phosphorylase/polyadenylase [Dyadobacter fermentans DSM 18053] gi|254947606|gb|ACT92306.1| Polyribonucleotide nucleotidyltransferase [Dyadobacter fermentans DSM 18053] Length = 713 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 20/149 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW- 58 RL GR +Q+R I+ A GS L G+T LTT TL K I +T K+G+ Sbjct: 321 RLDGRALDQVRPIASEVDFLPNAHGSALFTRGETQSLTTVTLGTKQDEQIVDTPLKYGYS 380 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y STG E R GR R +G RAL+ V+ Sbjct: 381 KFMLHYNFPGFSTG-----EVKPNRGPGR-----REVGHGNLALRALKKVLPAEGDNPYT 430 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC 140 I I D+++++G + A + +AL D Sbjct: 431 IRIVSDILESNGSSSMATVCAGSLALMDS 459 >gi|91974709|ref|YP_567368.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris BisB5] gi|123749482|sp|Q13EM2|PNP_RHOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91681165|gb|ABE37467.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris BisB5] Length = 722 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 24/231 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T L TL +E+ + T Sbjct: 316 RIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+R V+ I + Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIRPVLPPHHEFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ GA +AL D ++ + + +L+G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T+ G + +Q + A +++ L AKD Sbjct: 485 -----DEDHLGDMDFKVAGTEQG-VTSLQMDIKIAGITEEIMKVALGQAKD 529 >gi|145220228|ref|YP_001130937.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris vibrioformis DSM 265] gi|189037312|sp|A4SG26|PNP_PROVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145206392|gb|ABP37435.1| Polyribonucleotide nucleotidyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 732 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 8/142 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR +Q+R IS+ V A GS L G+T L TL K + N+ Sbjct: 332 RLDGRTLDQVRPISIDLGVIPRAHGSALFTRGETQALVAVTLGTKKDAQSVDTLTNSADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R +GR R + RA+R V I I + Sbjct: 392 RFMLHYNFPPFSVGE-VGRLGTTGR---REIGHGNLAERAIRMVAPTEQEFPYTIRIVSE 447 Query: 118 VIQADGGTRTAAITGAWVALHD 139 +++++G + A++ G +AL D Sbjct: 448 ILESNGSSSMASVCGGTLALMD 469 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 32/236 (13%) Query: 10 QMREISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY----- 63 Q + IS+ T R++K A+G+ +V+ GDT ++ T +K P N + EY Sbjct: 11 QGKTISIETGRMAKQADGATVVRMGDTMVIATVVSSKKTPSP--NQDFFPLQVEYREKYY 68 Query: 64 --GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 G P G KREA R + R+I RALR + Q+II +VI + Sbjct: 69 AAGKFP---GGFFKREA---RPSEKEILSARLIDRALRPLFPTGYYYETQVII--NVISS 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D A + G A + + D + +S+V G V G P +D G Sbjct: 121 D-QQNDADVLGGLAASAAIM--VSDIPFENAMSEVRVGRV----NGQFIINPTIDELEGS 173 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D I + +G I ++G E S+ + + I L LQ V Sbjct: 174 DIDISIGGT-----AGTICMLEG--EMKEISEAEMLEAIRFGHEAIKKLCALQDSV 222 >gi|217077873|ref|YP_002335591.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus TCF52B] gi|257096711|sp|B7IE23|PNP_THEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217037728|gb|ACJ76250.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus TCF52B] Length = 697 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 38/232 (16%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71 +V+K + GS V+FGD+ +L TA + ++ I +T EY G +P G Sbjct: 21 KVAKQSAGSVWVQFGDSVVLATANISDRT---IEGVDFVPLTVEYQEKFYAAGKIP---G 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE G+ + R+I R +R + Q+I+ V+ DG T +T Sbjct: 75 GFIKRE---GKPSESAILSARLIDRPIRPLFPKYLRNDVQLIV--TVLSVDGNT-PPDVT 128 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188 G A S +S++ +G VA + G + G +V + E S +D+ Sbjct: 129 GIIAA-----------SLALNISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDI- 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 V I V+G A+ T ++ L +A D I +I+ +++++S Sbjct: 177 --VVAGSKDAITMVEGEAKEVT--EEEMVNALMVAHDAIKQIIEFEEEILSQ 224 >gi|239618017|ref|YP_002941339.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF 19.5.1] gi|197321135|gb|ACH68639.1| polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF 19.5.1] gi|239506848|gb|ACR80335.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF 19.5.1] Length = 737 Score = 42.7 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 28/248 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58 +R+ GR+ ++R I+ + GS L G+T L T TL + I +T + G Sbjct: 323 LRMDGRKTTEIRPITCELDILPRTHGSALFTRGETQSLATVTLGAPIDEQIIDTLLEEGS 382 Query: 59 IT--AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 T Y P STG VKR GR R + RAL++++ I + Sbjct: 383 KTFMLHYNFPPFSTG-EVKRMRGPGR---REIGHGHLAERALKNMIPPEEEFPYTIRVVS 438 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173 ++++++G + A + +AL +K HVA ++ G++ P Sbjct: 439 EILESNGSSSMATVCSGSLAL-------------MAAGVPIKRHVAGVAMGLI-QEPDET 484 Query: 174 --IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + A S++ L AK+ ++ Sbjct: 485 VILTDILGNEDHYGDMDFKVAGTRDG-ITAFQMDVKVAGVSEEIMLKALYQAKEARMKIL 543 Query: 232 KLQKDVIS 239 L + IS Sbjct: 544 DLMYETIS 551 Score = 35.0 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 38/231 (16%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71 +++K + G+C V+F D+ +L T E+ VP+ + + + G +P G Sbjct: 22 KMAKQSHGACFVRFADSAILATVNASEEPLPQAGFVPLTVEFQEKFYAA---GKIP---G 75 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 VKRE G+ + R+I R +R + Q+I+ D T I Sbjct: 76 GFVKRE---GKPSENAILSARLIDRPIRPLFPKGMSNEVQVIVTVLSADPDNPPDTIGIF 132 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188 + +AL+ +S + G VA + G + G I + E S +D+ Sbjct: 133 ASSLALN--------------ISPIPFDGMVAGVRVGYVDGEYIFFPTSEELEKSELDI- 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 V + V+G A+ S++ L A + I L++ Q++++S Sbjct: 178 --VVAGTKEAVTMVEGEAKEV--SEEVMLKALMKAHEAIKQLVEFQEEIVS 224 >gi|313115448|ref|ZP_07800916.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622242|gb|EFQ05729.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf. prausnitzii KLE1255] Length = 716 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 29/176 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR N++R ++ + GS + G T +LTT TL + ++ + + + Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIIID 115 Y P S G EA + R GR +EI + RAL V L +L I Sbjct: 382 RYIHHYNFPPYSVG-----EARAPRSPGR-REIGHGALAERALVPV--LPSLEEFPYTIR 433 Query: 116 C--DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 C +V+ ++G T A+I G+ +AL D +K VA ISCG++ Sbjct: 434 CVSEVLSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLI 476 >gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Ailuropoda melanoleuca] Length = 240 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 99/245 (40%), Gaps = 30/245 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-HGWIT 60 R+ GR+ ++R+I V A+GS ++ G+T L P + + + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEAKGRRDRALVN 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QIIIDCDV 118 +Y STG R +R G R S E+ + + + + L+ L R QI I V Sbjct: 69 CQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQIDIYVQV 122 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGT A + A +A+ D M D V A S G + + DL Sbjct: 123 LQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDSTALADLS 169 Query: 179 YGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + E++ A ++ SG I ++ A +DH +L A D+ L V Sbjct: 170 HVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTLLDHV 226 Query: 238 ISNEV 242 + V Sbjct: 227 VRQHV 231 >gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium prausnitzii L2-6] Length = 714 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 29/176 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR N++R ++ + GS + G T +LTT TL + ++ + + + Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIIID 115 Y P S G EA + R GR +EI + RAL V L +L I Sbjct: 382 RYIHHYNFPPYSVG-----EARAPRSPGR-REIGHGALAERALLPV--LPSLEEFPYTIR 433 Query: 116 C--DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 C +V+ ++G T A+I G+ +AL D +K VA ISCG++ Sbjct: 434 CVSEVLSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLI 476 >gi|226493578|ref|NP_001146202.1| hypothetical protein LOC100279772 [Zea mays] gi|219886165|gb|ACL53457.1| unknown [Zea mays] Length = 733 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 21/173 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GRQ +++R + GS L GDT +L T TL ++ G T Sbjct: 129 LRVDGRQLDEVRPLYCESNTYPLLHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 188 Query: 61 A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + + ++ Sbjct: 189 KRFMLHYSFPPFSIDEVAKRGGLNRREVGHGT----LAEKALLAVLPPESDFPYTVRVNA 244 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V+ +DG T A++ G +AL D ++ HVA +S G++ Sbjct: 245 EVMASDGSTSMASVCGGSMALMDA-------------GIPVREHVAGVSVGLV 284 >gi|109103041|ref|XP_001112421.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Macaca mulatta] Length = 754 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+GS +V+ GDT ++ TA + K +P+ + + A G +P N Sbjct: 27 KLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 80 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +EI R+I R++R + Q++ C+++ DG Sbjct: 81 YLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDVL 133 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA VAL LS + G V A+ GM+ G +V+ E S+ + Sbjct: 134 AINGASVAL--------------SLSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSSTL 179 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 180 NLVVAGAPKSQIVMLEASAE 199 >gi|24943088|gb|AAK13047.1| 3'-5' RNA exonuclease [Homo sapiens] Length = 783 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62 N+ EIS + +++++A+GS +V+ GDT ++ TA + K +P+ + + A Sbjct: 53 NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G +P N ++RE G +EI R+I R++R + Q++ C+++ Sbjct: 109 AGRIPT---NYLRREV-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158 Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177 DG AI GA VAL LS + G V A+ G++ G +V+ Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGEYVVNP 204 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207 E S+ ++ IV ++ SAE Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234 >gi|20372922|emb|CAD30289.1| polynucleotide phosphorylase-like protein [Homo sapiens] gi|31657166|gb|AAH53660.1| Polyribonucleotide nucleotidyltransferase 1 [Homo sapiens] Length = 783 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62 N+ EIS + +++++A+GS +V+ GDT ++ TA + K +P+ + + A Sbjct: 53 NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G +P N ++RE G +EI R+I R++R + Q++ C+++ Sbjct: 109 AGRIPT---NYLRREV-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158 Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177 DG AI GA VAL LS + G V A+ G++ G +V+ Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGEYVVNP 204 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207 E S+ ++ IV ++ SAE Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234 >gi|322386167|ref|ZP_08059800.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus ATCC 51100] gi|321269747|gb|EFX52674.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus ATCC 51100] Length = 732 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 33/230 (14%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G +KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 G+ +AL + D G +A + G + G I++ + ++ Sbjct: 130 FGSSLAL-----SISDIP--------FNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELT 176 Query: 191 FVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S+D L + + +LI Q+++++ Sbjct: 177 VAGTKDAINMVE-SGAKE---LSEDIMLEALLKGHEAVKELIAFQEEIVA 222 >gi|71908066|ref|YP_285653.1| polynucleotide phosphorylase/polyadenylase [Dechloromonas aromatica RCB] gi|123760455|sp|Q47D98|PNP_DECAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71847687|gb|AAZ47183.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Dechloromonas aromatica RCB] Length = 715 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGTNRDEQIIDALAGEYRD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG GR G + +EI R+ RAL +V+ S + + Sbjct: 376 RFMLHYNMPPYATGE-------CGRVGTPKRREIGHGRLAKRALLAVLPKPEDFSYSMRL 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G +AL D LK HVA I+ G++ Sbjct: 429 VSEITESNGSSSMASVCGGCLALLDA-------------GVPLKAHVAGIAMGLI 470 >gi|308513305|ref|NP_952644.3| polynucleotide phosphorylase/polyadenylase [Geobacter sulfurreducens PCA] gi|81702393|sp|Q74CS9|PNP_GEOSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|39983574|gb|AAR34967.1| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens PCA] Length = 697 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 27/205 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R IS+ + A GS L G+T L +TL E+++ T+ Sbjct: 313 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRK 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G R A R+ G +R + R + D I I Sbjct: 373 RFLL-HYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDF----PYTIRIVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYP 173 D+++++G + A + G +A+ D +K VA I+ G++ G Sbjct: 428 DILESNGSSSMATVCGGALAMMDA-------------GVPIKAPVAGIAMGLIKEGEGIA 474 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197 I+ D+ ED D+D T++G Sbjct: 475 ILSDILGDEDHLGDMDFKVAGTEAG 499 >gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM 2048] gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM 2048] Length = 717 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT K P +N Sbjct: 3 QEKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|150390429|ref|YP_001320478.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470927|sp|A6TRK1|PNP4_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 4; AltName: Full=Polynucleotide phosphorylase 4; Short=PNPase 4 gi|149950291|gb|ABR48819.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 704 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 29/232 (12%) Query: 15 SLTRRVSKYAE---GSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67 +L + KYAE GSC+V++GDT +L AT E + + + + G +P Sbjct: 13 TLHVEIGKYAEQASGSCMVRYGDTTVLVNATASKSPREGIDFFPLSVDYEEKLYAVGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KREA R ++ R+I R +R + Q+I + D Sbjct: 73 ---GGFIKREA---RPSEKAVLTSRLIDRPIRPLFPKGYRNEVQVIATVMSVDKDYAPDI 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ G+ +AL + D G +++ G++ G +++ + + D+ Sbjct: 127 VAMIGSSIAL-----SISDIP--------FGGPTGSVNVGLVNGEFVLNPTSDQRAISDI 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D V I+ ++ A T +D L A + I ++ +++++ Sbjct: 174 DL-VVSGTKDAIMMIESGANEVT--EDQMLDALMFAHEEIKTIVAFIEEIVA 222 >gi|189501482|ref|YP_001957199.1| polynucleotide phosphorylase/polyadenylase [Candidatus Amoebophilus asiaticus 5a2] gi|226702593|sp|B3EU51|PNP_AMOA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189496923|gb|ACE05470.1| 3' exoribonuclease [Candidatus Amoebophilus asiaticus 5a2] Length = 713 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 20/150 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI--RNTKHGW 58 +RL GR+ +++R I A GS L G+T LTT TL K+ + R +G+ Sbjct: 320 LRLDGRKLDEIRAIESEIDYLPAAHGSSLFTRGETQSLTTVTLGTKLDEQLIDRALLNGY 379 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 Y STG E R GR R IG RAL+ V+ L Sbjct: 380 SRFMLHYNFPSFSTG-----EVKFNRGPGR-----REIGHGHLAMRALKKVLPLDTENPY 429 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDC 140 I I D+++++G + A + +AL D Sbjct: 430 TIRIVSDILESNGSSSMATVCAGSLALMDA 459 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 5/92 (5%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWITAEYGMLPRS 69 REI++ T +++K A+GS +V+ GDT LL T ++++ P H ++ + Sbjct: 16 REITIETGKLAKQADGSVVVRMGDTMLLATVVFKQELDPTVDFLPLHVEYQEKFAAAGKI 75 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSV 101 G ++RE G+ G I R++ RA+R + Sbjct: 76 PGGFLRRE---GKLGDHEVLISRLVDRAIRPL 104 >gi|160944532|ref|ZP_02091760.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii M21/2] gi|158444314|gb|EDP21318.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii M21/2] Length = 713 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 37/180 (20%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR N++R ++ + GS + G T +LTT TL + ++ + + + Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P S G EA + R GR R IG RAL V L +L Sbjct: 382 RYIHHYNFPPYSVG-----EARAPRSPGR-----REIGHGALAERALVPV--LPSLEEFP 429 Query: 112 IIIDC--DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 I C +V+ ++G T A+I G+ +AL D +K VA ISCG++ Sbjct: 430 YTIRCVSEVLSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLI 476 >gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus weihenstephanensis KBAB4] gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603] gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST196] gi|226702619|sp|A9VT44|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus weihenstephanensis KBAB4] gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST196] gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603] Length = 717 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT K P +N Sbjct: 3 QEKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|229174473|ref|ZP_04302005.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3] gi|228609033|gb|EEK66323.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3] Length = 712 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT K P +N Sbjct: 3 QEKQVFSIDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|332976846|gb|EGK13671.1| polyribonucleotide nucleotidyltransferase [Desmospora sp. 8437] Length = 697 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 18/131 (13%) Query: 16 LTRRVSKYAE---GSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGML 66 LT V KYA G+ LV++GDT ++ TAT ++ P+ + + + G + Sbjct: 16 LTMEVGKYANQANGAVLVRYGDTAVMATATASDEPKDLGFFPLTVNYEERLYAV---GKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + Q++ + D T Sbjct: 73 P---GGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGYRNDVQVVTTVMSVDQDCSTE 126 Query: 127 TAAITGAWVAL 137 AA+ GA AL Sbjct: 127 IAAMIGASTAL 137 >gi|255322462|ref|ZP_05363607.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae RM3277] gi|255300370|gb|EET79642.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae RM3277] Length = 731 Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 4/139 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58 +R GR+ ++R IS+ + A GSCL G T L ATL + M+ T+ G Sbjct: 341 VRADGRELKEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGA 400 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +T ++ G V + G R + RAL +D+++ + +++ ++ Sbjct: 401 VTDKFMFNYNFPGFSVGEASPLKAPGRRELGHGNLAKRALAPSIDVNSPYTIRLV--SEI 458 Query: 119 IQADGGTRTAAITGAWVAL 137 ++++G + A++ G +AL Sbjct: 459 LESNGSSSMASVCGGSLAL 477 >gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621] gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621] Length = 717 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT K P +N Sbjct: 3 QEKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|23099059|ref|NP_692525.1| polynucleotide phosphorylase/polyadenylase [Oceanobacillus iheyensis HTE831] gi|81746388|sp|Q8EQT7|PNP_OCEIH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|22777287|dbj|BAC13560.1| polyribonucleotide nucleotidyltransferase alpha chain [Oceanobacillus iheyensis HTE831] Length = 705 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 27/223 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 ++K A G+C++ +GDT +L+ AT + +P + + G +P G +KR Sbjct: 24 LAKQANGACMIHYGDTSVLSVATASSEPKDLPFFPLTVNYEERLYAVGKIP---GGFIKR 80 Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136 E GR ++ R+I R +R + Q+I + D + AA+ G+ +A Sbjct: 81 E---GRPSEKAILSSRLIDRPIRPLFPDGFRNEVQVISTVMSVDQDCPSEIAAMIGSSIA 137 Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT-D 195 L + D + +A ++ G + G I++ +++ D++ T D Sbjct: 138 L-----SVSDIP--------FEQPIAGVNVGRVDGEFIINPTIEQEAKSDIELTVAGTKD 184 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + ++VE G+ E +D + + I L+ Q++++ Sbjct: 185 AINMVEA-GANE---VPEDIMLEAIMFGHEEIKRLVAFQEELV 223 >gi|295322022|pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site gi|295322023|pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site gi|295322024|pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site Length = 259 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 8/108 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ R++ + V + AEGS LVK GDT ++ ++ P G I Sbjct: 23 RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPAP-DTPDRGVIIV 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL 107 ++P ++ G S E+ R++ R +R VDLS L Sbjct: 82 NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLSKL 124 >gi|291287262|ref|YP_003504078.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio acetiphilus DSM 12809] gi|290884422|gb|ADD68122.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio acetiphilus DSM 12809] Length = 711 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R+I + R+ A GS L G+T L ATL K I +T +G Sbjct: 320 RIDGRSYTDIRDIDIETRLLPMAHGSGLFTRGETQALVVATLGTKTDTQILDTIYGDGKK 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G R+ G +R + + L D I I + Sbjct: 380 RFMLHYNFPPFCVGEVGFLRGPGRREIGHGALAERSLAQVLPDADDF----PYTIRIVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 V++++G + A + G +AL D Sbjct: 436 VLESNGSSSMATVCGGCLALMDA 458 >gi|307155205|ref|YP_003890589.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822] gi|306985433|gb|ADN17314.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822] Length = 718 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 35/227 (15%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 ++ A GS L++ GDT +L TAT KVP +T +Y G +P G Sbjct: 22 LAPQAGGSVLIQSGDTAVLVTAT---KVPGR-EGVDFLPLTVDYEERLYAAGRIP---GG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 ++RE GR ++ I R+I R LR + Q+I + + A+TG Sbjct: 75 FLRRE---GRPPEKAILISRLIDRPLRPLFPHWLRDDLQVIATTLSMDEEVPPDVLAVTG 131 Query: 133 AWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191 A +A+ L+++ G +AA+ G++ I++ Y E +T D+D Sbjct: 132 ASLAVI--------------LAKIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDLDLVV 177 Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + G +V V+ A + + ++ + + DLI Q DVI Sbjct: 178 AGSPEG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIAAQLDVI 221 >gi|229031437|ref|ZP_04187437.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271] gi|228729726|gb|EEL80706.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271] Length = 712 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT K P +N Sbjct: 3 QEKQVFSIDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|257439280|ref|ZP_05615035.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium prausnitzii A2-165] gi|257198155|gb|EEU96439.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium prausnitzii A2-165] Length = 714 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 37/180 (20%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR N++R ++ + GS + G T +LTT TL + ++ + + + Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P S G EA + R GR R IG RAL V L +L Sbjct: 382 RYIHHYNFPPYSVG-----EARAPRSPGR-----REIGHGALAERALVPV--LPSLEEFP 429 Query: 112 IIIDC--DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 I C +V+ ++G T A+I G+ +AL D +K VA ISCG++ Sbjct: 430 YTIRCVSEVLSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLI 476 >gi|119356388|ref|YP_911032.1| polynucleotide phosphorylase/polyadenylase [Chlorobium phaeobacteroides DSM 266] gi|187610253|sp|A1BDY1|PNP_CHLPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119353737|gb|ABL64608.1| Polyribonucleotide nucleotidyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 732 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 26/144 (18%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A+G+ LV+ GDT +L T + P N + + EY G P Sbjct: 19 TGKMAKQADGAALVRLGDTMVLATVVSSKTPPPA--NQDYFPLQVEYREKYSAAGKFP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII---------DCDVIQ 120 G KRE GR + R+I RALR + L QII+ D DV+ Sbjct: 75 -GGFFKRE---GRPSEKEILTARLIDRALRPLFPDGYLFETQIIVTVFSSDQINDADVL- 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHM 144 G +AAI + + H+ + + Sbjct: 130 -GGVAASAAIMVSDIPFHNSMSEV 152 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 8/142 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR +++R IS+ + A GS L G+T L T TL K + ++ Sbjct: 332 RLDGRTLDEIRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDTLTDSADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G +R I S D I I D Sbjct: 392 RFMLHYNFPPFSVGETGRVGGTGRREIGHGNLAERSIKMVSPSETDF----PYTIRIVSD 447 Query: 118 VIQADGGTRTAAITGAWVALHD 139 +++++G + A++ G +AL D Sbjct: 448 ILESNGSSSMASVCGGTLALMD 469 >gi|189346136|ref|YP_001942665.1| polynucleotide phosphorylase/polyadenylase [Chlorobium limicola DSM 245] gi|257096673|sp|B3EH06|PNP_CHLL2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189340283|gb|ACD89686.1| Polyribonucleotide nucleotidyltransferase [Chlorobium limicola DSM 245] Length = 736 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 26/144 (18%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A+GS +V+ GDT +L T +K P N + + EY G P Sbjct: 22 TGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPP--NQDYFPLQVEYREKYSAAGKFP-- 77 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII---------DCDVIQ 120 G KRE+ R + R+I RALR + L QII+ D DV+ Sbjct: 78 -GGFFKRES---RPSEKEILSARLIDRALRPLFPDGYLFETQIIVTVISSDQINDADVL- 132 Query: 121 ADGGTRTAAITGAWVALHDCLQHM 144 G +AAI + + H+ + + Sbjct: 133 -GGLAASAAIMVSDIPFHNAMSEV 155 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 8/142 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR ++R IS+ + A GS L G+T L T TL K + N Sbjct: 335 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNNADK 394 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RA++ V + I D Sbjct: 395 KFMLHYNFPPFSVGETGRIGSTGRREIGHGN----LAERAIKMVAPPEQEFPYTVRIVSD 450 Query: 118 VIQADGGTRTAAITGAWVALHD 139 +++++G + A++ G +AL D Sbjct: 451 ILESNGSSSMASVCGGTLALMD 472 >gi|72012895|ref|XP_785829.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus purpuratus] gi|115926426|ref|XP_001179028.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus purpuratus] Length = 192 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 32/188 (17%) Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 I +Y M ST R R QG R S E+ + R + + QI I Sbjct: 18 INCQYSMATFSTNERKNRP-----QGDRKSTEMSLHLQRTFEATIQTHLYPRSQIDIFVQ 72 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ++QADGG A + A +A+ + M+D +V A S G + P+ D+ Sbjct: 73 ILQADGGNYCACVNAATLAIINAGIPMKD-------------YVCACSSGYVNNTPLTDV 119 Query: 178 DYGEDS----TIDVD--------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA-K 224 Y E+S + V A F M + H+ ++ E A+ +A++N A K Sbjct: 120 SYLEESQGGPVVTVAMLPKSEQIALFKMDNRLHVDHLEQVLEVASKGCKDMYAVMNAAVK 179 Query: 225 DRIADLIK 232 + ++ + K Sbjct: 180 EHVSRMAK 187 >gi|281412875|ref|YP_003346954.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila RKU-10] gi|281373978|gb|ADA67540.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila RKU-10] Length = 708 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 34/230 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71 +V+K + GS LV+FGDT +L TA + +K VP+ + + + G +P G Sbjct: 19 KVAKQSSGSVLVRFGDTVVLATANISDKAVEGVDFVPLTVEFQERFYAA---GKIP---G 72 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE G+ + R+I R +R + Q+I+ + I Sbjct: 73 GFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPSIPPDVVGIF 129 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A +AL+ +S++ +G VA I G G + L ED + Sbjct: 130 AASLALN--------------VSKIPFEGVVAGIRVGYRDGQ-FIALPSEEDIEKGLMDI 174 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 V + V+G A+ T ++ L A I +L+ Q++++S Sbjct: 175 TVAGTKDAVTMVEGEAKEVT--EEDMVKALRFAHSVIKELVDFQEEILSE 222 >gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273] gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272] gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272] gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273] Length = 712 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT K P +N Sbjct: 3 QEKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMFGSSLAL 138 >gi|116073519|ref|ZP_01470781.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. RS9916] gi|116068824|gb|EAU74576.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. RS9916] Length = 721 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 32/234 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS +++ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGSFMRRE---GRPPERATLISRLIDRPMRPLFPNWLRDDLQIVATCMSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+TGA +A +G +AA+ G+L +++ Y E Sbjct: 124 ADVLAVTGASLA-------------TLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+D T G +V V+ A + + ++ + + +LIK Q+ ++ Sbjct: 171 GDLDLVVAGTPEG-VVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQQAIL 221 >gi|83589904|ref|YP_429913.1| polynucleotide phosphorylase/polyadenylase [Moorella thermoacetica ATCC 39073] gi|123524642|sp|Q2RJL9|PNP_MOOTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83572818|gb|ABC19370.1| Polyribonucleotide nucleotidyltransferase [Moorella thermoacetica ATCC 39073] Length = 747 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 38/197 (19%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63 R+++L T R++K A G+ +V +G T +L TAT E+ P+ + + + Sbjct: 14 RDLTLETGRLAKQAGGAVMVSYGGTMVLVTATASEEPREGIDFFPLTVDYEERLYAA--- 70 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G +KRE GR ++ R+I R +R + ++ + D Sbjct: 71 GKIP---GGFIKRE---GRPSEKAILSARLIDRPIRPLFPKFYRNDVHVVATVMSVDQDC 124 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGED 182 A I GA AL LS + G + A+S G++ P+++ ED Sbjct: 125 PPNVAGIIGASAAL--------------MLSAIPFAGPIGAVSVGLIDNRPVINPTLEED 170 Query: 183 S------TIDVDANFVM 193 S T+ AN +M Sbjct: 171 SRSSLNLTVAGTANAIM 187 >gi|74316711|ref|YP_314451.1| polynucleotide phosphorylase/polyadenylase [Thiobacillus denitrificans ATCC 25259] gi|123759157|sp|Q3SKX5|PNP_THIDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|74056206|gb|AAZ96646.1| polyribonucleotide nucleotidyltransferase protein [Thiobacillus denitrificans ATCC 25259] Length = 706 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V A GS L G+T L TL +E+ + + Sbjct: 315 RIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQTIDALEGSYSD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL +V+ + + Sbjct: 375 RFMLHYNMPPYATGE-------TGRVGSPKRREIGHGRLAKRALLAVLPSKEEFGYTMRV 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G ++L D LK HVA I+ G++ Sbjct: 428 VSEITESNGSSSMASVCGGCLSLMDA-------------GAPLKAHVAGIAMGLI 469 >gi|332704834|ref|ZP_08424922.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus str. Walvis Bay] gi|332554983|gb|EGJ52027.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus str. Walvis Bay] Length = 745 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 92/228 (40%), Gaps = 31/228 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 T R + A+G+ LV+ GDT +L TA L E + + ++ G +P G Sbjct: 23 TGRFANQADGAVLVRSGDTVVLVTAVTQALPEDKGFFPLTCNYQEMSYAAGRIP---GGY 79 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--AAIT 131 +RE GR R + R+I R LR QII V+ AD A+T Sbjct: 80 FRREI--GRPSDRETLVSRLIDRPLRPSFPKGFRDEVQII--ATVLSADKNVNPDVLAVT 135 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA ALH +S++ G +A+ G + G + Y ++ T N Sbjct: 136 GASAALH--------------ISKIPFNGPLASTRVGYVNGGFVAFPTY-QNITELSSLN 180 Query: 191 FVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 V+ S +V V+G AE S+D + I L LQ ++ Sbjct: 181 MVLAASRNAVVMVEGGAE--FMSEDLLAEAIAFGHKMIIPLFDLQDEL 226 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 38/200 (19%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R+ GR +R +S+ + GS L K G+T L ATL E+++ Sbjct: 321 VRIDGRDLTTVRPLSIEVGLLPQTHGSALFKRGETSSLAIATLGSSRDEQRIETLTGEIT 380 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 G++ Y P S R+ G + RA++ V+ I + Sbjct: 381 KGFML-HYNFPPFCVNEARFLRGPSRREIGHGN----LAERAIKPVLPADGEFPFTIRVV 435 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 + ++++G + AA+ G +AL D +K VA I+ G+ V Sbjct: 436 AETMESNGSSSMAAVCGGCLALMDA-------------GVPIKAPVAGIAMGLAK----V 478 Query: 176 DLDYGEDSTIDVDANFVMTD 195 D DY FV+TD Sbjct: 479 DDDY-----------FVLTD 487 >gi|188528628|ref|NP_149100.2| polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor [Homo sapiens] gi|115502437|sp|Q8TCS8|PNPT1_HUMAN RecName: Full=Polyribonucleotide nucleotidyltransferase 1, mitochondrial; AltName: Full=3'-5' RNA exonuclease OLD35; AltName: Full=PNPase old-35; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1; AltName: Full=Polynucleotide phosphorylase-like protein; Flags: Precursor gi|62988884|gb|AAY24271.1| unknown [Homo sapiens] gi|119620492|gb|EAX00087.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Homo sapiens] Length = 783 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62 N+ EIS + +++++A+GS +V+ GDT ++ TA + K +P+ + + A Sbjct: 53 NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G +P N ++RE G +EI R+I R++R + Q++ C+++ Sbjct: 109 AGRIPT---NYLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158 Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177 DG AI GA VAL LS + G V A+ G++ G +V+ Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGEYVVNP 204 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207 E S+ ++ IV ++ SAE Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234 >gi|301756464|ref|XP_002914081.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Ailuropoda melanoleuca] Length = 784 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+GS +V+ GDT ++ TA + K +P+ + + A G +P N Sbjct: 62 KLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +EI R+I R++R + Q++ C+++ DG Sbjct: 116 YLRREI-----GSSDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEPDVL 168 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA VAL LS + G + A+ GM+ G +V+ E S+ + Sbjct: 169 AINGASVAL--------------SLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTL 214 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 215 NLVVAGAPKSQIVMMEASAE 234 >gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102] gi|254782705|sp|C1EP29|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102] Length = 712 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 43/248 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 ++ + D + AA+ G+ +AL + D +G +A + G + G Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL-----SISDIP--------FEGPIAGTTVGRING 159 Query: 172 YPIVDLDYGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +++ + D+ T D+ ++VE A ++ + D I L Sbjct: 160 EFVINPTVEQQEQSDIHLVVAGTKDAINMVE----AGADQVPEETMLEAIMFGHDEIKRL 215 Query: 231 IKLQKDVI 238 I Q++++ Sbjct: 216 IAFQEEIV 223 >gi|57641568|ref|YP_184046.1| exosome complex RNA-binding protein Rrp42 [Thermococcus kodakarensis KOD1] gi|73919277|sp|Q5JIR7|ECX2_PYRKO RecName: Full=Probable exosome complex exonuclease 2 gi|57159892|dbj|BAD85822.1| exosome subunit Rrp42p homolog, 3'-5' exoribonuclease [Thermococcus kodakarensis KOD1] Length = 272 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 27/240 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHGWI 59 R+ GR R++ + V + AEGS V+ GDT +L A L E P G I Sbjct: 24 RIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEPFPDL---PDRGVI 80 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQ 111 T ++P ++ G + E+ R++ R +R VDL L R Sbjct: 81 TTNVELVPLASPT-----FEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRV 135 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-------GHVA-A 163 I ID V+ G A+ GA AL + + + ++L HV Sbjct: 136 IFIDVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYNEETGEVEILDEYEPLPVNHVPIP 195 Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 ++ + +VD E+ +D ++GHI Q E F + L +A Sbjct: 196 VTFAKIGNSIVVDPSLDEERVMDGRLTITTDETGHISAAQ-KGEAGAFKMEEVMYALEVA 254 >gi|282600904|ref|ZP_05980076.2| polyribonucleotide nucleotidyltransferase [Subdoligranulum variabile DSM 15176] gi|282570791|gb|EFB76326.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum variabile DSM 15176] Length = 759 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 26/180 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR N++R ++ + GS + G T +LT TL + ++ + +T++ Sbjct: 363 RVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDAQLMDDLSDTQYK 422 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115 Y P S G EA + R GR +EI + RAL V+ + I Sbjct: 423 RYIHHYNFPPYSVG-----EARAPRSPGR-REIGHGNLAERALVPVLPDQSEFPYTIRCV 476 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPI 174 +V+ ++G T A+I G+ +AL D +K VA ISCG++ G P+ Sbjct: 477 SEVLSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLITDGDPL 523 >gi|187471099|sp|B0C1M5|PNP_ACAM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 716 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 34/237 (14%) Query: 12 REISLT-RRVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A G L++ G+T +L TAT + +P+ + + + Sbjct: 13 REIKLTIGRFAPQAGGCVLIESGETSVLVTATRSSGREGIDFLPLLVDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G ++RE GR ++ R+I R +R + QI+ + Sbjct: 70 ---RVPGGFLRRE---GRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISMDEQVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA VA L+++ KG +AA+ G++ I++ Y E S Sbjct: 124 PDVLAVTGASVATL--------------LAKIPFKGPMAAVRVGLVGDDFIINPTYEEIS 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++D + G I+ G+ E A QD A ++ + + DLIK QK++I+ Sbjct: 170 EGELDLVVAGSPDGVIMVEAGANEVA--EQDMIEA-IDFGYEVVCDLIKAQKELIAE 223 >gi|114577443|ref|XP_515490.2| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial [Pan troglodytes] Length = 783 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62 N+ EIS + +++++A+GS +V+ GDT ++ TA + K +P+ + + A Sbjct: 53 NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G +P N ++RE G +EI R+I R++R + Q++ C+++ Sbjct: 109 AGRIPT---NYLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158 Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177 DG AI GA VAL LS + G V A+ G++ G +V+ Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGEYVVNP 204 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207 E S+ ++ IV ++ SAE Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234 >gi|115653057|ref|XP_788673.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1 [Strongylocentrotus purpuratus] gi|115929402|ref|XP_001192933.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1 [Strongylocentrotus purpuratus] Length = 981 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 24/151 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE------KVPMWIRNTK 55 R GR+ ++MR+I+ + + K GS L + G T + T T + P+W + + Sbjct: 538 RCDGREADEMRDITCSVDLYKPLHGSALFQRGQTQVFCTVTFDSIESALRADPVWQEDIR 597 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGS 109 Y P +T +GR GG + +R +G + LR VV + Sbjct: 598 EKNFMLHYEFPPYATNE-------TGRTGGIN---RRELGHGALAEKGLRPVVPSDYPFT 647 Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDC 140 I + +V++++G + A + G +AL D Sbjct: 648 --IRLTSEVLESNGSSSMATVCGGSLALMDA 676 >gi|325299313|ref|YP_004259230.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis DSM 18170] gi|324318866|gb|ADY36757.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis DSM 18170] Length = 729 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ N++R I Y GS + G+T L+T TL +EKV + + Sbjct: 319 RLDGRKTNEIRPIWCEVSPLPYPHGSAIFTRGETQSLSTVTLGTKADEKVVDDVLDQHKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + +++ D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAGYPYCVRVM--SD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455 >gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia] Length = 227 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 31/187 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR QMR I + +GSCL K G T ++ V T+ + Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICL------VQGPRAKTQSELLLI 58 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR----SVVDLSALGSRQIIIDCD 117 EY + P S + ++ + + M L+ +++ L G +I I Sbjct: 59 EYSVSPFSN--------IESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVC 110 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 VIQ DG +++A +AL D M+D + +++ G+ G IVDL Sbjct: 111 VIQNDGSSKSAVFNAITLALLDAGVSMKD-------------FLVSVTVGLDQGNLIVDL 157 Query: 178 DYGEDST 184 E T Sbjct: 158 TQEESKT 164 >gi|119620491|gb|EAX00086.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Homo sapiens] Length = 500 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62 N+ EIS + +++++A+GS +V+ GDT ++ TA + K +P+ + + A Sbjct: 53 NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G +P N ++RE G +EI R+I R++R + Q++ C+++ Sbjct: 109 AGRIPT---NYLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158 Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177 DG AI GA VAL LS + G V A+ G++ G +V+ Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGEYVVNP 204 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207 E S+ ++ IV ++ SAE Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234 >gi|147677610|ref|YP_001211825.1| polynucleotide phosphorylase/polyadenylase [Pelotomaculum thermopropionicum SI] gi|187610305|sp|A5D2S6|PNP_PELTS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146273707|dbj|BAF59456.1| polyribonucleotide nucleotidyltransferase [Pelotomaculum thermopropionicum SI] Length = 734 Score = 42.0 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 21/152 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T R++ A G+ V++GDT +L TAT+ V I +T +Y G +P Sbjct: 22 TGRLANQASGAVFVRYGDTAVLVTATVAPTVRAGIDFFP---LTVDYEERFYAVGKIP-- 76 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE+ R ++ R+I R +R + Q+I + D AA Sbjct: 77 -GGFIKRES---RPSEKAILSGRLIDRPIRPLFPKEMRNEVQVIATILSVDQDNAPEIAA 132 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161 + GA AL H+ + KF + V+ G V Sbjct: 133 MVGASAAL-----HISEIPLKFPIGGVIVGRV 159 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 8/143 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR N++R IS+ V GS L G T +L+ TL EE++ + + Sbjct: 325 LRIDGRALNEVRPISVEVGVLPRPHGSGLFTRGQTQILSVVTLGTVSEEQILDGLGVEES 384 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + R+ G + RAL +V+ I I Sbjct: 385 KRFMHHYNFPPYSTGETRPLRSPGRREIGHGA----LAERALAAVIPGEEEFPYTIRIVS 440 Query: 117 DVIQADGGTRTAAITGAWVALHD 139 + ++++G T ++ G+ +AL D Sbjct: 441 EALESNGSTSMGSVCGSTLALMD 463 >gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-28] gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-28] Length = 712 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W] gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W] Length = 712 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|146329836|ref|YP_001209934.1| polynucleotide phosphorylase/polyadenylase [Dichelobacter nodosus VCS1703A] gi|187610297|sp|A5EXU0|PNP_DICNV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146233306|gb|ABQ14284.1| polyribonucleotide nucleotidyltransferase [Dichelobacter nodosus VCS1703A] Length = 693 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR +R I++ V A GS L G+T L ATL + +T G + Sbjct: 315 RIDGRDTKTVRPITIHTSVLPRAHGSALFTRGETQALVVATLGTGRDAQLLDTLDGEVRD 374 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y LP S G + + R+ G R+ R L +V+ L I + + Sbjct: 375 NFMLHYNFLPFSVGEIGRIGSPKRREIGHG----RLARRGLSAVLPLEEDFPYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A++ G+ +AL D Sbjct: 431 ITESNGSSSMASVCGSSLALMDA 453 >gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-29] gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3] gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3] gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-29] Length = 712 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST24] gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST24] Length = 717 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676] gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185] gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2] gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-15] gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-Cer4] gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550] gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 10876] gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis BMB171] gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 10876] gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550] gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-Cer4] gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-15] gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2] gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185] gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676] gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis BMB171] Length = 712 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|73974735|ref|XP_857497.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 4 [Canis familiaris] Length = 244 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 13/157 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R+ GR+ ++R+I V A+GS ++ G+T L E + + + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEARGVRTLTQRKALVN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QIIIDCDV 118 +Y STG R +R G R S E+ + + + + L+ L R QI I V Sbjct: 73 CQYSSATFSTGERKRRP-----HGDRKSCEMGLHLRQTFEAAI-LTQLHPRSQIDIYVQV 126 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED----CSNKF 151 +QADGGT A + A +A+ D M D CS F Sbjct: 127 LQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGF 163 >gi|327400939|ref|YP_004341778.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6] gi|327316447|gb|AEA47063.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6] Length = 259 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 19/246 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++ R I + + AEGS LVK G+T ++ ++ P + G I Sbjct: 23 RIDGRKFDEFRHIEIETNIIAKAEGSALVKLGNTQVVVGVKMQPGEP-FPDAPDKGIIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113 ++P ++ G S E+ R++ R +R VDL+ L + I Sbjct: 82 NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLTKLCIEEGEKVWLIF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME--DCSNKFQLSQVLKGHVAAISCGMLCG 171 ID + DG A+ A AL E D F L ++ +++ ++ Sbjct: 137 IDIHALDDDGNLMDASSLAAIAALLTTTVPAERFDVGEDFPLP--VRDLPISVTSLIVNN 194 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 +VD E S + + +IV +Q S S++ F+ +++++ ++ ++ Sbjct: 195 RILVDPSRDEVSVGEYFMTITTDQADNIVAMQKSG-SYLLSEEKFYELIDISIEKAREIR 253 Query: 232 KLQKDV 237 +L KDV Sbjct: 254 ELLKDV 259 >gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241] gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus E33L] gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis str. Al Hakam] gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0488] gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0442] gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0193] gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0465] gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0174] gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis Tsiankovskii-I] gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NVH0597-99] gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108] gi|227813285|ref|YP_002813294.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. CDC 684] gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-42] gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201] gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 4342] gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC 6E1] gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. CNEVA-9066] gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Western North America USA6153] gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Kruger B] gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Vollum] gi|81395117|sp|Q6HF08|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81686592|sp|Q636L9|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470934|sp|A0RHH8|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782704|sp|C3L7C0|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241] gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L] gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis str. Al Hakam] gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0488] gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0193] gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0442] gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0465] gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0174] gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis Tsiankovskii-I] gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108] gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NVH0597-99] gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. CDC 684] gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC 6E1] gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 4342] gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201] gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-42] gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 712 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|262340893|ref|YP_003283748.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272230|gb|ACY40138.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 713 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 15/146 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP------MWIRNT 54 +RL GR Q+R I GS L G+T LTT TL + + + N Sbjct: 324 IRLDGRTSKQIRPIWSVVDYLPGVHGSALFSRGETQSLTTVTLGSSLDANKIDNVVMENQ 383 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + ++ Y P STG VS R+ G Q RAL++++ + R + Sbjct: 384 EKFYL--HYNFPPFSTGEIRPIRGVSRREIGHGNLAQ----RALKNIIPNNPYTIRVV-- 435 Query: 115 DCDVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A + A +AL D Sbjct: 436 -SDILESNGSSSMATVCAASLALMDA 460 >gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. A1055] Length = 712 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 4222] gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 4222] Length = 712 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|218904934|ref|YP_002452768.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820] gi|226702597|sp|B7JJ84|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820] Length = 712 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72] gi|187470932|sp|A1K7B5|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72] Length = 699 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ I Sbjct: 316 RIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIAGEYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P STG +GR G + +EI R+ RAL +++ S I + Sbjct: 376 RFMLHYNFPPFSTGE-------TGRFGVTKRREIGHGRLAKRALVAMLPKGEDFSYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G +AL D M+D HVA I+ G++ Sbjct: 429 VSEITESNGSSSMASVCGGSLALMDAGVPMKD-------------HVAGIAMGLI 470 >gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI 77-13-4] gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI 77-13-4] Length = 268 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 24/195 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-------LEEKVPMWIRN 53 +R+ GR+ N++R ++ R A+GS ++ G T ++ T + +V R+ Sbjct: 13 LRVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQTAQRD 72 Query: 54 TKH---GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110 +TA + S+ +R KR GR R+QEI+ I A S + Sbjct: 73 VAAINVNVVTAGF-----SSVDRKKR----GRNDKRTQEIEVTIANAFASNLHTHLFPHS 123 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I I V+ DG A + +AL D M D ++ G + + G Sbjct: 124 SITISLHVLSQDGSLLAALLNATTLALIDAGIPMTD-----YIAACTAGSTSTYAAGDDS 178 Query: 171 GYPIVDLDYGEDSTI 185 P++DL+ E+ + Sbjct: 179 ADPLLDLNNQEEQEL 193 >gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 712 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 712 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|52550027|gb|AAU83876.1| 3'-5' exoribonuclease [uncultured archaeon GZfos34H10] Length = 260 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 14/213 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R+I + R + K A+GS V+ GDT +L +E P + G + Sbjct: 23 RADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGEP-FSDTPNKGILMT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ E SG S E+ R++ R +R +DL L G + + Sbjct: 82 NAELVPLAS-----PEFESGPPNENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMLF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID + DG AA GA +L + E + + ++ A++ + G Sbjct: 137 IDIHTLDNDGNLVDAAALGAITSLLNVAIPYEQYGLTGEDTLQIRDTPVAVTVVEIGGNL 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206 +VD + E+S + G I +Q S Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSG 229 >gi|218898959|ref|YP_002447370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842] gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|226702616|sp|B7IUG5|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842] gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar sotto str. T04001] Length = 712 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus B4264] gi|226702617|sp|B7HDT0|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264] Length = 712 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|317402106|gb|EFV82699.1| polyribonucleotide nucleotidyltransferase [Achromobacter xylosoxidans C54] Length = 718 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL ++ I I Sbjct: 380 RFMLHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRALIPLLPAPEDFQYTIRI 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +A+ D ++D HVA ++ G++ Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPVKD-------------HVAGVAMGLILDGGK 479 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T++G Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTENG 506 >gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis Bt407] gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis Bt407] gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 712 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus H3081.97] gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187] gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1] gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST26] gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293] gi|226702618|sp|B7HLE0|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782706|sp|B9IV96|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus H3081.97] gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187] gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1] gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293] gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST26] gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 712 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC 10987] gi|81409473|sp|Q732R5|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 10987] Length = 712 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|319956216|ref|YP_004167479.1| polyribonucleotide nucleotidyltransferase [Nitratifractor salsuginis DSM 16511] gi|319418620|gb|ADV45730.1| polyribonucleotide nucleotidyltransferase [Nitratifractor salsuginis DSM 16511] Length = 729 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 12/143 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP------MWIRNT 54 +R GR+ +++R IS+ + GSCL G+T L T TL E + R+ Sbjct: 345 VRPDGRKPDEVRPISIETNLLPSVHGSCLFTRGETQALATVTLGEGKEGQLYELLTERSP 404 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y P G A S R+ G + RAL V+D SR I + Sbjct: 405 RTERFMVHYNFPPFCVGEARPIGAPSRRELGHGN----LAKRALEPVIDREL--SRTIRL 458 Query: 115 DCDVIQADGGTRTAAITGAWVAL 137 ++++++G + A + +AL Sbjct: 459 VSEILESNGSSSMATVCAGSLAL 481 >gi|186476768|ref|YP_001858238.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phymatum STM815] gi|226702629|sp|B2JDN2|PNP_BURP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|184193227|gb|ACC71192.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phymatum STM815] Length = 712 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSAEEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|330817796|ref|YP_004361501.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli BSR3] gi|327370189|gb|AEA61545.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli BSR3] Length = 712 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRSGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALVACLPSAEEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLILEGNKFAV 484 Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T++G Sbjct: 485 LTDILGDEDHLGDMDFKVAGTEAG 508 >gi|325294385|ref|YP_004280899.1| polyribonucleotide nucleotidyltransferase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064833|gb|ADY72840.1| Polyribonucleotide nucleotidyltransferase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 712 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 40/232 (17%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRS 69 T +++K A+G+ +V GDT +L TA + ++ P+ + + + G +P Sbjct: 19 TGKLAKQADGAVIVSQGDTMVLVTAVMSDEPREGIDFFPLLVEYRERAYAA---GKIP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA- 128 G VKRE G+ R+I R++R + Q++ VI AD A Sbjct: 74 -GGFVKRE---GKPTDEEVLKSRVIDRSIRPIFPKGFRNDVQVV--AFVISADQENDPAV 127 Query: 129 -AITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA ALH +S++ + V A+ + G +V+ Y + D Sbjct: 128 LAINGASAALH--------------ISRIPFEKPVGAVRVVRVNGKLVVNPSYEQQQNAD 173 Query: 187 VDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + N V++ + +V V+G A+ ++ + LA + I I+ Q+++ Sbjct: 174 I--NLVVSGTEDAVVMVEGGAKEV--PEEEILDAIELAHEEIKKSIRAQQEL 221 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 33/180 (18%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR+ N++R I++ + GS L G T L T TL E ++ + + Sbjct: 311 IRIDGRKPNEIRPITIEVGLLPRVHGSALFTRGQTQALVTTTLGTPEEYQLVEGLMPEEQ 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 Y P G E R GR R IG RAL V+ Sbjct: 371 KRFMLHYNFPPFCVG-----EVAPLRGPGR-----REIGHGALAERALAPVIPEEDEFPY 420 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + D+++++G + A + G ++L D +K VA I+ G++ Sbjct: 421 VIRVVSDILESNGSSSMATVCGGSLSLMDA-------------GVPIKAQVAGIAMGLIL 467 >gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 200] gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 200] Length = 712 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134] gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134] Length = 712 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|257451721|ref|ZP_05617020.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. 3_1_5R] Length = 743 Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 95/250 (38%), Gaps = 38/250 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TATL +E++ + + Sbjct: 360 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 419 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + RALR V+ I + D Sbjct: 420 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 475 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL +K HVA I+ G++ Sbjct: 476 ITESNGSSSQASICGGSLAL-------------MSAGVPIKEHVAGIAMGLIKEGEEFTV 522 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHI-----VEVQGSAE---RATFSQDH-----FFAML 220 + D+ ED D+D T SG +++ G E R +Q H ++ Sbjct: 523 LTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHVARQQILEVM 582 Query: 221 NLAKDRIADL 230 N A ADL Sbjct: 583 NTAISSPADL 592 >gi|167043480|gb|ABZ08177.1| putative 3' exoribonuclease family, domain 1 [uncultured marine microorganism HF4000_APKG2H5] Length = 264 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 102/250 (40%), Gaps = 26/250 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-T 60 R SGR + R+ L V AEGS V+ GDT + L+ VP R + G + + Sbjct: 23 RHSGRGRWEARDTELEIGVLPRAEGSARVRMGDTIVYAGVKLQIMVPYPDRPNQGGLMCS 82 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QI 112 AE + P + N G S E+ R++ R +R +D+ L G + Q+ Sbjct: 83 AE--VRPVAGPN-----WEPGPPSPESIELGRVVDRGIRESGCIDVDGLCLIPGEKAWQV 135 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS---QVLKGHVAAISCGM- 168 I+D I DG A A+ + E +F++S + L I C Sbjct: 136 ILDLFAISDDGNLFDAFALAGIAAMRTAMIPEE----RFEISGEDRPLNISKTPIMCSYH 191 Query: 169 -LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + G + D D E+ D + + D GH+ +Q R F+ F ++ A+ R Sbjct: 192 KVGGRFVYDADGREELGGDERIHITLGDDGHVHSLQ-KGLRGIFTASEFTEIMEHAQSRC 250 Query: 228 ADLIKLQKDV 237 +L ++ V Sbjct: 251 NELREMVSKV 260 >gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis RB2256] gi|123380103|sp|Q1GVQ8|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256] Length = 771 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 18/228 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR Q+R I A GS L G+T + T TL E++ + + Sbjct: 316 RIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATCTLGTKDAEQMIDGLNGLSYQ 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL V+ I + D Sbjct: 376 HFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHPVLPSKDEFPYTIRLTSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D ++ + + +L+G AI + D+ Sbjct: 432 ITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAI---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T G I +Q + A +++ F A L AK+ Sbjct: 483 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITREIFEAALAQAKE 529 >gi|257076445|ref|ZP_05570806.1| exosome complex RNA-binding protein Rrp42 [Ferroplasma acidarmanus fer1] Length = 260 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 14/130 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR REI +T A GS +V+ G T ++ +EE P + + G + Sbjct: 26 RLDGRGLQDYREIKITENFVPKAAGSAMVEIGKTKVVAGIKVEEGDP-FEDSPDSGVMAL 84 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 +LP + SG ++ E R++ R +R +VD S L G R I Sbjct: 85 NIELLPMAFPT-----FESGPPSEQAIEYSRVVDRGIRESKMVDTSKLVIESGKRVWMIF 139 Query: 114 IDCDVIQADG 123 +D DV+ DG Sbjct: 140 VDIDVLNYDG 149 >gi|229162743|ref|ZP_04290700.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803] gi|228620625|gb|EEK77494.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803] Length = 712 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 35/230 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT ++ +N +T Y G +P Sbjct: 21 TSQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFPLTVNYEERLYAVGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR ++ R+I R +R + Q++ + D + AA Sbjct: 75 -GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A + G + G +++ + D+ Sbjct: 131 MLGSSLAL-----SISDIP--------FEGPIAGATVGRINGEFVINPTVEQQEQSDIHL 177 Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T D+ ++VE A ++ + D I LI Q++++ Sbjct: 178 VVAGTKDAINMVE----AGADQVPEETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|115522221|ref|YP_779132.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris BisA53] gi|122298071|sp|Q07V82|PNP_RHOP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115516168|gb|ABJ04152.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris BisA53] Length = 721 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 24/231 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R+I V A GS L G+T L TL +E+ + T Sbjct: 316 RIDGRDSTTVRQIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RAL V+ + + Sbjct: 376 QFLLHYNFPPFSVGE-------TGRMGGTKRREIGHGKLAWRALHPVLPPHHEFPYTLRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ GA +AL D ++ + + +L+G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D TD G I +Q + A +++ L AK+ Sbjct: 485 -----DEDHLGDMDFKVAGTDHG-ITSLQMDIKIAGITEEIMKVALGQAKE 529 >gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex exonuclease, putative; ribosomal RNA processing protein, putative [Candida dubliniensis CD36] gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida dubliniensis CD36] Length = 240 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 27/188 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57 +R+ GR+ N++R R++ + ++GS V+ G+T ++ T++ + +R+ +H Sbjct: 9 LRIDGRRWNELRRFEC--RINTHPNSSDGSSYVEQGNTKVM--CTVQGPIEPTLRSQQHS 64 Query: 58 W---ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 I + ST R KR R R E++ + + V ++ I+I Sbjct: 65 ERANIEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVI 120 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 + V+ DGG I +AL D M D +V+ +SCG+ P+ Sbjct: 121 NVQVLCQDGGMLATIINSITLALIDAGISMYD-------------YVSGVSCGLYDQTPL 167 Query: 175 VDLDYGED 182 +D++ E+ Sbjct: 168 LDVNNLEE 175 >gi|296448311|ref|ZP_06890203.1| polyribonucleotide nucleotidyltransferase [Methylosinus trichosporium OB3b] gi|296254188|gb|EFH01323.1| polyribonucleotide nucleotidyltransferase [Methylosinus trichosporium OB3b] Length = 714 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 16/177 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I V A GS L G+T L ATL +E+ + T Sbjct: 315 VRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQI 112 Y P S G +GR G GR +EI ++ RA+R ++ +A I Sbjct: 375 ERFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPMLPAAAEFPYTI 426 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++ +++G + A + G+ +AL D ++ + + +L+G A+ +L Sbjct: 427 RVVSEITESNGSSSMATVCGSSLALMDAGVPLKKPTAGIAMGLILEGERFAVLSDIL 483 >gi|254172923|ref|ZP_04879597.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4] gi|214033079|gb|EEB73907.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4] Length = 273 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 23/248 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + R+I + + AEGS V+ G T +L ++ P + G +T Sbjct: 24 RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQII 113 ++P ++ G R+ E+ R+I R +R V+L L R + Sbjct: 83 NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGHVAAISCGM- 168 ID V+ DG A A AL +++ E+ +L + V I + Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALLTTRVPKVEYNEETGEIVKLDEYEPLPVRRIPLPVT 197 Query: 169 ---LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + IVD + E++ +D ++GHI VQ E +F + ++ A Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRITITTDETGHISAVQ-KGEGGSFKLEEVMYAIDTALK 256 Query: 226 RIADLIKL 233 + +L K+ Sbjct: 257 KADELRKI 264 >gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Ames] gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Sterne] gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Bacillus anthracis str. A2012] gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0389] gi|229603609|ref|YP_002868046.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0248] gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Australia 94] gi|81583685|sp|Q81WM8|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782703|sp|C3P5L0|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. Ames] gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. Sterne] gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0389] gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0248] Length = 712 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVNIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|332226543|ref|XP_003262449.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Nomascus leucogenys] Length = 778 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62 N+ EIS + +++++A+GS +V+ GDT ++ TA + K +P+ + + A Sbjct: 53 NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G +P N ++RE G +EI R+I R++R + Q++ C+++ Sbjct: 109 AGRIPT---NYLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158 Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177 DG AI GA VAL LS + G V A+ G++ G +V+ Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGECVVNP 204 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207 E S+ ++ IV ++ SAE Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234 >gi|30021896|ref|NP_833527.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC 14579] gi|81433861|sp|Q819Z1|PNP_BACCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29897452|gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 14579] Length = 712 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|327399809|ref|YP_004340678.1| polyribonucleotide nucleotidyltransferase [Hippea maritima DSM 10411] gi|327182438|gb|AEA34619.1| Polyribonucleotide nucleotidyltransferase [Hippea maritima DSM 10411] Length = 703 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 10/145 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW 58 +R+ GR +++R I+ V A GS + G+T L TL + I + ++ G+ Sbjct: 314 VRIDGRGLDEIRPITCEVGVLPRAHGSAVFTRGETQALVATTLGSREDAQIIDDVSEEGY 373 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y LP STG VKR GR+ G +R I L S D I + Sbjct: 374 ERFMLHYNFLPFSTG-EVKRLGPPGRREIGHGNLAKRAIEPMLPSEDDF----PYAIRVV 428 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A + G+ ++L D Sbjct: 429 SDILESNGSSSMATVCGSTLSLMDA 453 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 37/228 (16%) Query: 21 SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGNR 73 +K A+G+C+++ GDT +L TA ++ P + +T Y G +P G Sbjct: 21 AKQADGACVIRMGDTMVLATAVSSKEPPKEFLD--FLPLTVNYQERFYAAGKIP---GGF 75 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 VKRE G+ + R+I R++R + Q+II I AD A I+ Sbjct: 76 VKRE---GKPTVHETLVSRLIDRSIRPLFPKDYKQEIQVIITT--ISADQENDPAIISIL 130 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 + CL + L V V+ G+ + ++D D N ++ Sbjct: 131 AASCSLCLSDIP------FLGPVAGVRVSRFENGLKAFASLKEID-------DSRLNLIL 177 Query: 194 T---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+ +++E G+ E S+D + KD I L+ Q+++I Sbjct: 178 AGTKDAINMIEA-GAGE---LSEDEMVDAIMFGKDNIDILLDAQEEII 221 >gi|314933453|ref|ZP_07840818.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae C87] gi|313653603|gb|EFS17360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae C87] Length = 699 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ +D AA Sbjct: 75 -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADSDCSPEMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G +++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYVDGNYVINPSVAEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+++I + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225 >gi|290968451|ref|ZP_06559990.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp. type_1 str. 28L] gi|290781447|gb|EFD94036.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp. type_1 str. 28L] Length = 716 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 45/195 (23%), Positives = 82/195 (42%), Gaps = 26/195 (13%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74 +++K A G+ LV++GDT + TAT E + + G +P G + Sbjct: 21 KLAKQASGAALVRYGDTAVFVTATGAKEAREDADFFPLTVDYEEKMYSVGKIP---GGFI 77 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE G+ + R+I R +R + + ++ + D AA+ GA Sbjct: 78 KRE---GKPPESATLFARLIDRPIRPLFPKTYRHEVHVVAYDFCVDHDNAPEIAAMIGAS 134 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194 V+L C+ H+ G +A + G + G +++ + D+D FV+ Sbjct: 135 VSL--CMSHIP-----------FAGPIAGVRVGRVDGQFVINPTVVQSEKSDMD--FVVA 179 Query: 195 DSGH-IVEVQGSAER 208 + I+ V+G AE+ Sbjct: 180 GTKDAILMVEGGAEQ 194 >gi|110597075|ref|ZP_01385364.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans DSM 13031] gi|110341266|gb|EAT59731.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans DSM 13031] Length = 731 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 8/142 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR ++R IS+ + A GS L G+T L T TL K + N+ Sbjct: 332 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNSADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RA++ V I I D Sbjct: 392 KFMLHYNFPPFSVGETGRIGSTGRREIGHGN----LAERAIKMVAPTEQEFPYTIRIVSD 447 Query: 118 VIQADGGTRTAAITGAWVALHD 139 +++++G + A++ G +AL D Sbjct: 448 ILESNGSSSMASVCGGTLALMD 469 >gi|146297069|ref|YP_001180840.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|187470950|sp|A4XL64|PNP_CALS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145410645|gb|ABP67649.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 701 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P STG E+ R GR R IG RAL V+ Sbjct: 373 RYMHHYNFPPYSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + +V+ ++G T A++ G+ +AL D +K VA IS G++ Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468 >gi|313888270|ref|ZP_07821941.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845673|gb|EFR33063.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 703 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 16/126 (12%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71 +V++ A G+CLV++GDT +L TAT K P+ + + + G +P G Sbjct: 20 KVAEQANGACLVQYGDTVVLVTATSSSKPREGIDFFPLSVDYEEKMYAV---GKIP---G 73 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE GR ++ R+I R LR + I+ + D A+ Sbjct: 74 GFIKRE---GRPSEKATLSARLIDRPLRPLFPEGYRNDVHIVATVLSVDQDHSPEIVAMI 130 Query: 132 GAWVAL 137 G+ +AL Sbjct: 131 GSSIAL 136 >gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae BGR1] gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae BGR1] Length = 709 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLILEDNK 481 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T++G Sbjct: 482 FAVLTDILGDEDHLGDMDFKVAGTEAG 508 >gi|300794376|ref|NP_001179126.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Bos taurus] gi|297480320|ref|XP_002691377.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Bos taurus] gi|296482678|gb|DAA24793.1| polyribonucleotide nucleotidyltransferase 1 [Bos taurus] Length = 783 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 46/204 (22%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+GS +V+ GDT ++ TA + K +P+ + + A G +P N Sbjct: 62 KLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +EI R+I R++R + QI+ C+++ DG Sbjct: 116 YLRREI-----GSSDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNEPDVL 168 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGE--DSTI 185 AI GA VAL LS + G + A+ GM+ G +V+ E +ST+ Sbjct: 169 AINGASVAL--------------SLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMANSTL 214 Query: 186 DVDANFVMT--DSGHIVEVQGSAE 207 N V+T IV ++ SAE Sbjct: 215 ----NLVVTGAPKSQIVMLEASAE 234 >gi|315640904|ref|ZP_07896000.1| ribonuclease PH/Ham1 protein [Enterococcus italicus DSM 15952] gi|315483322|gb|EFU73822.1| ribonuclease PH/Ham1 protein [Enterococcus italicus DSM 15952] Length = 432 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 23/206 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR E R+ + KYA GS + GDT + L +++ G+ Sbjct: 1 MRYDGRYEKSKRQTKIETNNRKYALGSATIHQGDTIVSCAVNL--------SDSQDGYQL 52 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ N + ++ +Q +S E+ + + L V+ + LG +++ I+ V Q Sbjct: 53 KLVQLIAPMANN----QELTKKQ--KSSEL--FLEQLLNGVLSDTNLGGKKLHIEVVVEQ 104 Query: 121 ADGGTRTAAITGAWVALH---DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 DG A ++AL D L + SN S + +G A + P++D Sbjct: 105 DDGSFLAVAANAMYLALQQACDTLTRRNNQSN----SGISQGFAAIQVAFITPEIPLIDP 160 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQ 203 D E+ V+A + ++G + VQ Sbjct: 161 DRHEELQALVEATVCVNEAGEFLAVQ 186 >gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-44] gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-44] Length = 717 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT K P +N Sbjct: 3 QEKQVFSIDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|85542918|sp|Q5RCW2|PNPT1_PONAB RecName: Full=Polyribonucleotide nucleotidyltransferase 1, mitochondrial; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1; Flags: Precursor Length = 783 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62 N+ EIS + +++++A+GS +V+ GDT ++ TA + K +P+ + + A Sbjct: 53 NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G +P N ++RE G +EI R+I R++R + Q++ C+++ Sbjct: 109 AGRIPT---NYLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158 Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177 DG AI GA VAL LS + G V A+ G++ G +V+ Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGECVVNP 204 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207 E S+ ++ IV ++ SAE Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234 >gi|332285140|ref|YP_004417051.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7] gi|330429093|gb|AEC20427.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7] Length = 715 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS++ V A GS L G+T L ATL +E++ I Sbjct: 320 RIDGRDTRTVRPISVSLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDSIMGEHRD 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P +TG +GR G + +EI R+ RAL S + + I I Sbjct: 380 RFMLHYNFPPFATGE-------TGRFGSPKRREIGHGRLAKRALVSSLPEAQDFQYTIRI 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G +A+ D ++D HVA ++ G++ Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPVKD-------------HVAGVAMGLI 474 >gi|258596889|ref|XP_001349602.2| 3' exoribonuclease, putative [Plasmodium falciparum 3D7] gi|254688464|gb|AAC71872.3| 3' exoribonuclease, putative [Plasmodium falciparum 3D7] Length = 275 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 11/146 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R++ R+ N++R++ + + SC G+T +LTT ++ N + T Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTT--------VYGPNPDSKYATY 83 Query: 62 EYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G + + + S RQ R +I+ ++ + +++ L I I C +IQ Sbjct: 84 SKGKVFLDVKSLNINTIGASDRQ--RDDDIKSLLIECISNIILLEKYPQCSIKIKCLIIQ 141 Query: 121 ADGGTRTAAITGAWVALHDCLQHMED 146 DGG +A +T +AL M+D Sbjct: 142 DDGGCLSATLTCISLALIKAQIQMKD 167 >gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides DSM 12442] gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock3-17] gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock1-4] gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock1-4] gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock3-17] gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides DSM 12442] Length = 717 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT K P +N Sbjct: 3 QEKQVFSIDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|319892292|ref|YP_004149167.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|317161988|gb|ADV05531.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] Length = 697 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 44/243 (18%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TRT 127 G KRE GR G + R+I R +R + QII V+ AD Sbjct: 75 -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPDGYRHDVQII--NTVLSADPNCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTI 185 AA+ G+ +AL + D +G +A ++ G + G ++ +L+ E S + Sbjct: 129 AAMIGSSMAL-----SVSDIP--------FQGPIAGVNVGYVDGEYVINPNLEQREKSRL 175 Query: 186 DVD-------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D++ N V + I E + E F + + ++ IA L +++ I Sbjct: 176 DLEVAGHKDAVNMVEAGASEITEAE-MLEAILFGHEEIKRLCAFQEEIIAHLQPEKREFI 234 Query: 239 SNE 241 E Sbjct: 235 PEE 237 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 27/206 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R +S + A GS L G T L+ TL E ++ + +H Sbjct: 318 IRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQIIDGLGEEEH 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIID 115 Y S G E R GR + +G RALR ++ + I Sbjct: 378 KRFMHHYNFPNFSVG-----ETGPVRAPGRREIGHGALGERALRYIIPDEKTFPYTVRIV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GY 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Y Sbjct: 433 SEVLESNGSSSQASICGSTLALMDA-------------GVPIKAPVAGIAMGLVTREESY 479 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSG 197 I+ D+ ED+ D+D T G Sbjct: 480 TILTDIQGMEDALGDMDFKVAGTTEG 505 >gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis str. Marburg] gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter marburgensis str. Marburg] Length = 267 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 14/130 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ R+IS+ V AEGS VK G+T ++ + P + + G I Sbjct: 21 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 79 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113 +LP ++ G RS E+ R++ R +R ++DL L GS+ + Sbjct: 80 NSELLPMASPT-----FEPGPPDERSVELSRVVDRCVRESQMIDLEKLCIIEGSKVWMLF 134 Query: 114 IDCDVIQADG 123 +D +I DG Sbjct: 135 LDLHIIDYDG 144 >gi|148270567|ref|YP_001245027.1| polynucleotide phosphorylase/polyadenylase [Thermotoga petrophila RKU-1] gi|187611330|sp|A5IMM8|PNP_THEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|147736111|gb|ABQ47451.1| Polyribonucleotide nucleotidyltransferase [Thermotoga petrophila RKU-1] Length = 708 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 34/230 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71 +V+K + GS LV+FGDT +L TA + +K VP+ + + + G +P G Sbjct: 19 KVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQERFYAA---GKIP---G 72 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE G+ + R+I R +R + Q+I+ + + I Sbjct: 73 GFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVPPDVVGIF 129 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A +AL+ +S++ +G VA I G G + L ED + Sbjct: 130 AASLALN--------------VSKIPFEGIVAGIRVGYRDGQ-FIALPSEEDIEKGLMDI 174 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 V + V+G A+ +++ L A I +L+ Q++++S Sbjct: 175 TVAGTKDAVTMVEGEAKEV--AEEDMVKALRFAHSVIKELVDFQEEILSE 222 >gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes OXCC13] gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes OXCC13] Length = 713 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 29/176 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I++ V GS L G+T L ATL +K+ + Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTSRDNQKIDALMGEYSD 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113 ++ Y M P +TG +GR G + +EI R+ RAL + + S I Sbjct: 380 AFMM-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALIACLPSQEEFSYSIR 431 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++++++G + A++ G +AL D +K HVA I+ G++ Sbjct: 432 LVSEIMESNGSSSMASVCGGSLALMDA-------------GVPVKNHVAGIAMGLI 474 >gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD1] gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD1] Length = 713 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 380 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRV 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 433 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 475 >gi|313887414|ref|ZP_07821103.1| polyribonucleotide nucleotidyltransferase [Porphyromonas asaccharolytica PR426713P-I] gi|332299600|ref|YP_004441521.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas asaccharolytica DSM 20707] gi|312923056|gb|EFR33876.1| polyribonucleotide nucleotidyltransferase [Porphyromonas asaccharolytica PR426713P-I] gi|332176663|gb|AEE12353.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas asaccharolytica DSM 20707] Length = 736 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 10/148 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ N++R I + GS + G+T L+T TL +EK+ + N Sbjct: 318 RLDGRRTNEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDVLNYGKE 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG +S R+ G R + R + D + I + D Sbjct: 378 RFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIPE--DYPYV----IRVMSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME 145 +++++G + A + +AL D M+ Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQMK 459 >gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1] Length = 238 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 13/186 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56 +R+ GR+ N++R + R A+GS ++ G T ++ T + + Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDM 72 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 I + S+ +R KR GR R QEI+ I AL S + + I I Sbjct: 73 AAINVNVVVAGFSSVDRKKR----GRNDKRIQEIETTIANALSSNLHTHLFPNSSISISL 128 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 V+ DG A I +AL D M D ++ G + + G P++D Sbjct: 129 HVLSQDGSLLAALINATTLALIDAGIPMSD-----YIAACTAGSTSTYAAGDDNADPLLD 183 Query: 177 LDYGED 182 L+ E+ Sbjct: 184 LNNQEE 189 >gi|323464611|gb|ADX76764.1| polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius ED99] Length = 697 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 44/243 (18%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TRT 127 G KRE GR G + R+I R +R + QII V+ AD Sbjct: 75 -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPDGYRHDVQII--NTVLSADPNCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTI 185 AA+ G+ +AL + D +G +A ++ G + G ++ +L+ E S + Sbjct: 129 AAMIGSSMAL-----SVSDIP--------FQGPIAGVNVGYVDGEYVINPNLEQREKSRL 175 Query: 186 DVD-------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D++ N V + I E + E F + + ++ IA L +++ I Sbjct: 176 DLEVAGHKDAVNMVEAGASEITEAE-MLEAILFGHEEIKRLCAFQEEIIAHLQPEKREFI 234 Query: 239 SNE 241 E Sbjct: 235 PEE 237 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 27/206 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R +S + A GS L G T L+ TL E ++ + +H Sbjct: 318 IRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQIIDGLGEEEH 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIID 115 Y S G E R GR + +G RAL+ ++ + I Sbjct: 378 KRFMHHYNFPNFSVG-----ETGPVRAPGRREIGHGALGERALKYIIPDEKTFPYTVRIV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GY 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Y Sbjct: 433 SEVLESNGSSSQASICGSTLALMDA-------------GVPIKAPVAGIAMGLVTREESY 479 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSG 197 I+ D+ ED+ D+D T G Sbjct: 480 TILTDIQGMEDALGDMDFKVAGTTEG 505 >gi|332827644|gb|EGK00386.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas gadei ATCC BAA-286] Length = 720 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 RL GR ++R I A GS + G+T LTT T L+EK+ + N Sbjct: 318 RLDGRSTTEIRPIWSEVDYLPGAHGSAIFTRGETQSLTTVTLGTKLDEKIIDDVLNNGKE 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG+ + V R+ G + RAL+ ++ A I + D Sbjct: 378 RFLLHYNFPPFSTGDARPQRGVGRREIGHGN----LAHRALKPMI--PANYPYVIRVVSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 432 ILESNGSSSMATVCAGTLALMDA 454 >gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia multivorans ATCC 17616] gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia multivorans ATCC 17616] gi|226702628|sp|A9AJP0|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans ATCC 17616] gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans ATCC 17616] Length = 715 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis JLW8] gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8] Length = 709 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ V GS L G+T L ATL +E++ ++ Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYAD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + + Sbjct: 376 RFMLHYNMPPYATGE-------TGRVGTPKRREIGHGRLAKRALVAALPAKEDFDYTMRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 429 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KNHVAGIAMGLI 470 >gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2M] gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2] gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2] gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2M] Length = 715 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|320527320|ref|ZP_08028505.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei F0204] gi|320132344|gb|EFW24889.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei F0204] Length = 752 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 41/231 (17%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 ++K A GS ++++ DT +L+TAT + ++T +T Y G +P G Sbjct: 34 IAKQAGGSVVIRYADTTVLSTATANNQA----KDTDFFPLTVLYQEKMYAAGKIP---GG 86 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI---IIDCDVIQADGGTRTAA 129 +RE GR + R+I R +R + QI ++ CD D + A+ Sbjct: 87 FTRRE---GRPTEHATLTARLIDRPIRPLFAEGFRNEVQIVNTVLSCD---PDASSEMAS 140 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL C+ + G VA + + G I++ ++ D++ Sbjct: 141 LFGSSLAL--CISDIP-----------FNGPVAGVMVARVDGEYIINPSVEQEKNSDLNV 187 Query: 190 NFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T + ++VE G+ E S++ L + D I +L +Q++VI+ Sbjct: 188 TVAGTKNAINMVEA-GAKE---VSEEDMLKALMIGHDAIKELCAIQEEVIA 234 >gi|312793244|ref|YP_004026167.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180384|gb|ADQ40554.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 701 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P STG E+ R GR R IG RAL V+ Sbjct: 373 RYMHHYNFPPFSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + +V+ ++G T A++ G+ +AL D +K VA IS G++ Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468 >gi|312876944|ref|ZP_07736919.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor lactoaceticus 6A] gi|311796259|gb|EFR12613.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor lactoaceticus 6A] Length = 701 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P STG E+ R GR R IG RAL V+ Sbjct: 373 RYMHHYNFPPFSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + +V+ ++G T A++ G+ +AL D +K VA IS G++ Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468 >gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa AUO158] gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa AUO158] Length = 722 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ + Sbjct: 330 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 389 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 390 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRV 442 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 443 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLILEGNK 489 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T+ G Sbjct: 490 FAVLTDILGDEDHLGDMDFKVAGTEQG 516 >gi|159900395|ref|YP_001546642.1| polynucleotide phosphorylase/polyadenylase [Herpetosiphon aurantiacus ATCC 23779] gi|257096698|sp|A9B8G1|PNP_HERA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|159893434|gb|ABX06514.1| Polyribonucleotide nucleotidyltransferase [Herpetosiphon aurantiacus ATCC 23779] Length = 777 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 35/211 (16%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKV-PMWIRNT 54 +R+ GR+ N++R I++ V GS L G T +LT ATL E+++ + I T Sbjct: 320 IRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATLGSPGDEQRLDDLGIETT 379 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQI 112 +H Y STG EA R G R ++I ++ RAL V+ + Sbjct: 380 RH--YMHHYNFPAFSTG-----EARPSR-GPRRRDIGHGKLAERALVPVLPEKDKFPYTM 431 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V+ ++G + A++ G+ +AL D +K VA ++ G++ G Sbjct: 432 RLVSEVLASNGSSSMASVCGSSLALMDA-------------GVPIKAPVAGVAMGLITGK 478 Query: 173 P------IVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED+ D+D T +G Sbjct: 479 EAGQFSVLTDIQGLEDALGDMDFKVAGTTAG 509 >gi|78189646|ref|YP_379984.1| polynucleotide phosphorylase/polyadenylase [Chlorobium chlorochromatii CaD3] gi|123579359|sp|Q3APY4|PNP_CHLCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78171845|gb|ABB28941.1| RNA binding S1 [Chlorobium chlorochromatii CaD3] Length = 728 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 8/142 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR +Q+R I++ + A GS L G+T L T TL + + N+ Sbjct: 332 RLDGRALDQVRPITIELGLIPRAHGSALFTRGETQALVTLTLGTQKDAQSVDNLTNSDDK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + ++ R+ G + R+++ V A I I D Sbjct: 392 RFYLHYNFPPFSVGECGRLGSIGRREIGHGN----LAERSIKMVAPTEAEFPYTIRIVSD 447 Query: 118 VIQADGGTRTAAITGAWVALHD 139 +++++G + A++ G +AL D Sbjct: 448 ILESNGSSSMASVCGGTLALMD 469 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT--AEYGMLPRSTGNRV 74 T +++K A+G+ +V+ GDT +L T +K P ++ + +Y R G Sbjct: 19 TGKMAKQADGAAIVRLGDTMVLATVVSSKKTPPLGQDFFPLQVEYREKYSAAGRFPGGFF 78 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122 KRE GR + R+I RALR + QIII VI +D Sbjct: 79 KRE---GRPSEKEILSARLIDRALRPLFPDGYYYETQIII--SVISSD 121 >gi|312622695|ref|YP_004024308.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kronotskyensis 2002] gi|312203162|gb|ADQ46489.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kronotskyensis 2002] Length = 701 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P STG E+ R GR R IG RAL V+ Sbjct: 373 RYMHHYNFPPFSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + +V+ ++G T A++ G+ +AL D +K VA IS G++ Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468 >gi|56478759|ref|YP_160348.1| polynucleotide phosphorylase/polyadenylase [Aromatoleum aromaticum EbN1] gi|81356612|sp|Q5NZR7|PNP_AZOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56314802|emb|CAI09447.1| polyribonucleotide nucleotidyltransferase protein [Aromatoleum aromaticum EbN1] Length = 699 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ I Sbjct: 316 RIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRDEQIIDAIAGEYRE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G + +R + AL + D S + + + Sbjct: 376 SFLLHYNFPPFSTGETGRMGVTKRREVGHGRLAKRALIAALPADEDF----SYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ GA +A+ D M K HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGASLAMMDAGVPM-------------KAHVAGIAMGLI 470 >gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia K12] gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia K12] Length = 719 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +S+ V GS L G+T L ATL I + G Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL +V+ + + + Sbjct: 375 RFLLHYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALLAVLPKKEDFAYTMRV 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V +++G + A++ G +AL D LK HVA I+ G++ Sbjct: 428 VSEVTESNGSSSMASVCGGCLALLDA-------------GVPLKAHVAGIAMGLI 469 >gi|223044246|ref|ZP_03614283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis SK14] gi|222442396|gb|EEE48504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis SK14] Length = 699 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D AA Sbjct: 75 -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D FQ G +A ++ G + G +++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--FQ------GPIAGVNVGYVDGNYVINPSVNEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+++I + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225 >gi|225181391|ref|ZP_03734835.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter alkaliphilus AHT 1] gi|225167972|gb|EEG76779.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter alkaliphilus AHT 1] Length = 721 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 35/245 (14%) Query: 1 MRLSGRQENQMREISL-TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTK 55 M+L+GR E+S+ T R++K A GS ++++GDT +L+TAT E V + Sbjct: 6 MQLAGR------ELSIETGRIAKQASGSVVLRYGDTVVLSTATASAEPREGVDFFPMTVD 59 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + G +P G +KRE GR ++ R+ R R + + I+ Sbjct: 60 YEERLYAVGKIP---GGFIKRE---GRPTEKAILSARLTDRPCRPLFPKGFRNAVHIVTT 113 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPI 174 + D +I GA AL +S + G ++A+ G + G P+ Sbjct: 114 VLSVDQDNPPEVLSIVGASAAL--------------SISNIPFAGPLSAVVVGWIDGKPV 159 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ++ + + + T G ++ G+ E ++D + D +++ LQ Sbjct: 160 INPNQEQAEQSKLHLVVASTKDGIMMVEAGAHE---LTEDEVLEAIMAGDDANKEIVALQ 216 Query: 235 KDVIS 239 + +++ Sbjct: 217 EQMVA 221 >gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis CI] gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar anthracis str. CI] Length = 712 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 25/146 (17%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 QE Q+ I L T +++K A G+ LV++GDT +L+TAT + +N Sbjct: 3 QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASREA----KNVDFFP 58 Query: 59 ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +T Y G +P G +KRE GR ++ R+I R +R + Q Sbjct: 59 LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112 Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137 ++ + D + AA+ G+ +AL Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|284036900|ref|YP_003386830.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM 74] gi|283816193|gb|ADB38031.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM 74] Length = 708 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 83/210 (39%), Gaps = 37/210 (17%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 RL GR+ +Q+R+IS GS L G+T LTT TL K I + + Sbjct: 318 RLDGRKLDQIRQISAEAGYLPGPHGSALFTRGETQSLTTVTLGTKTDEQIVDQTMFQGYS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y STG E R GR R IG R+L+ V+ + Sbjct: 378 KFLLHYNFPGFSTG-----EVKPNRGAGR-----REIGHGNLAHRSLKKVLPPAEENPYT 427 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC- 170 I I D+++++G + A + +AL D +K VA I+ G++ Sbjct: 428 IRIVSDILESNGSSSMATVCAGTMALMDA-------------GIKIKAPVAGIAMGLISD 474 Query: 171 --GYPIV-DLDYGEDSTIDVDANFVMTDSG 197 Y ++ D+ ED D+D T+ G Sbjct: 475 GDKYAVLSDILGDEDHLGDMDFKVTGTEKG 504 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 13/116 (11%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 REI++ T ++++ A+G+ +V+ GDT LL T +E V + + A G + Sbjct: 15 REITIETGKLARQADGAVVVRLGDTMLLATVVSSKDAKEGVDFLPLSVDYQEKFASAGRI 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122 P G+ +RE GR G I R++ RALR + + Q++I +I AD Sbjct: 75 P---GSFQRRE---GRLGDHEILISRLVDRALRPIFPDNYHADTQVMI--TLISAD 122 >gi|188994656|ref|YP_001928908.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas gingivalis ATCC 33277] gi|188594336|dbj|BAG33311.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 774 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ ++R I + GS + G+T LTT TL +EK+ + N Sbjct: 349 RLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 408 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ ++ ++I D Sbjct: 409 RFLLHYNFPPFSTGEARPQRGVGRREIGHGN----LAHRALKRMIPTDYPYVVRVI--SD 462 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 463 ILESNGSSSMATVCAGTLALRDA 485 >gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Thiomonas sp. 3As] Length = 719 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +S+ V GS L G+T L ATL I + G Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL +V+ + + + Sbjct: 375 RFLLHYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALLAVLPKKEDFAYTMRV 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V +++G + A++ G +AL D LK HVA I+ G++ Sbjct: 428 VSEVTESNGSSSMASVCGGCLALLDA-------------GVPLKAHVAGIAMGLI 469 >gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818] Length = 241 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 6/146 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N++R + + +A+GS + GDT ++ ++ + G + Sbjct: 10 LREDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQ--GVGKAGDAGKVV 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ M ST R K R ++ E+ I S + QI I V+Q Sbjct: 68 CDFEMAAFSTTQRRKPL----RLDRKNAELGSKIASTFESAIMTDLYPRSQIEISVQVLQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMED 146 ADGG AI +AL D M D Sbjct: 124 ADGGVLAVAINAVTLALMDAGVAMTD 149 >gi|75674227|ref|YP_316648.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter winogradskyi Nb-255] gi|123614401|sp|Q3SWP5|PNP_NITWN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|74419097|gb|ABA03296.1| 3'exoribonuclease [Nitrobacter winogradskyi Nb-255] Length = 718 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 24/231 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T + TL +E+ + T Sbjct: 316 RIDGRDVKTVRNIVAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSLAGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+R V+ I + Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGAKRREIGHGKLAWRAIRPVLPPHHEFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ GA ++L D ++ + + +L+G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGERYAVLSDILG---- 484 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T++G I +Q + A +++ L AKD Sbjct: 485 -----DEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALGQAKD 529 >gi|302872107|ref|YP_003840743.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor obsidiansis OB47] gi|302574966|gb|ADL42757.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor obsidiansis OB47] Length = 701 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P STG E+ R GR R IG RAL V+ Sbjct: 373 RYMHHYNFPPFSTG-----ESKPIRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + +V+ ++G T A++ G+ +AL D +K VA IS G++ Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468 >gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1] Length = 1336 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 24/178 (13%) Query: 8 ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-HGWITAEYGML 66 ++++R + V + A+GS V+ G+T +L N H ++ E+ Sbjct: 37 DDELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYA 96 Query: 67 PRSTGNRVKREAVS---GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 ST R R + QG R I R L SVV L I ++ V+QADG Sbjct: 97 SFSTDQRRARSRLDRKLAEQGTR-------IARTLESVVMGQLLSRSTINLNVQVLQADG 149 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G AI A +A+ D M+D + A + G+L G ++D ++ E Sbjct: 150 GVLATAINAASLAMMDAGVPMKD-------------FLCACNAGVLEGVAVLDTNHSE 194 >gi|307128697|ref|YP_003880727.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia muelleri CARI] gi|306483159|gb|ADM90029.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia muelleri CARI] Length = 710 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +RL GR + +R IS GS + G+T L+T TL K+ I K Sbjct: 319 IRLDGRSLDDIRNISSKVDCLPGVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVIIQDK 378 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P STG + VS R+ G Q RAL++++ + +++ Sbjct: 379 QKF-YLHYNFPPFSTGEIKLLKGVSRREIGHGNLAQ----RALKNIIPFDNPYTIRVV-- 431 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 DV++++G + A + + +AL D Sbjct: 432 SDVLESNGSSSMATVCASTLALMDA 456 >gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23] Length = 273 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 19/210 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56 +R+ GR+ N++R + R A+GS + G T ++ T + + Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQAQAQRRGGQ 72 Query: 57 ------GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110 I + S+ +R KR R R+QEI+ I +AL S V Sbjct: 73 APGRDAASIIVNVVIAGFSSVDRKKR----ARSDKRTQEIEITIAKALSSTVHTHLFPHS 128 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + V+ DG A I A +A+ D M D ++ G ++ + G Sbjct: 129 SITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTD-----YIAACTAGSTSSYAAGDDS 183 Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200 P++DL+ E+ + + DS +V Sbjct: 184 ADPLLDLNNQEEQELPFLTVASLGDSDRVV 213 >gi|226940843|ref|YP_002795917.1| polynucleotide phosphorylase/polyadenylase [Laribacter hongkongensis HLHK9] gi|254782724|sp|C1D8W8|PNP_LARHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226715770|gb|ACO74908.1| Pnp [Laribacter hongkongensis HLHK9] Length = 701 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I++ V A GS L G+T L + TL K I + G T Sbjct: 316 RIDGRDTRTVRPIAIRTGVLPRAHGSVLFTRGETQALVSTTLGTKQDEQIIDALAGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P STG +GR G + +EI R+ RAL +V+ S + + Sbjct: 376 RFMLHYNFPPYSTGE-------TGRMGPPKRREIGHGRLAKRALIAVLPKQEDFSYSMRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G ++L + L HVA I+ G++ Sbjct: 429 VSEITESNGSSSMASVCGGCLSLMNA-------------GVPLSAHVAGIAMGLILEDNR 475 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T++G Sbjct: 476 FAVLTDILGDEDHLGDMDFKVAGTENG 502 >gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei S13] gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei S13] Length = 713 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLILEGNK 481 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D V T G Sbjct: 482 FAVLTDILGDEDHLGDMDFKVVGTADG 508 >gi|242373566|ref|ZP_04819140.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis M23864:W1] gi|242348929|gb|EES40531.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis M23864:W1] Length = 699 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D AA Sbjct: 75 -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D FQ G +A ++ G + G +++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--FQ------GPIAGVNVGYVDGNYVINPSVSEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+++I + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225 >gi|312127889|ref|YP_003992763.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor hydrothermalis 108] gi|311777908|gb|ADQ07394.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor hydrothermalis 108] Length = 701 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P STG E+ R GR R IG RAL V+ Sbjct: 373 RYMHHYNFPPFSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + +V+ ++G T A++ G+ +AL D +K VA IS G++ Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468 >gi|282165296|ref|YP_003357681.1| probable exosome complex exonuclease 2 [Methanocella paludicola SANAE] gi|282157610|dbj|BAI62698.1| probable exosome complex exonuclease 2 [Methanocella paludicola SANAE] Length = 259 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 23/237 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++ R +++ V AEGS V GD+ ++ ++ P ++ G I Sbjct: 23 RADGRKFDEFRPVTIKVGVIGKAEGSSDVMIGDSRVVVGVKIQPGEP-FMDTPDKGVIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ +G + E+ R++ R +R +DLS L G + + Sbjct: 82 NLELVPLASPT-----FETGPPREDAIELARVVDRGVRESEAIDLSKLCIESGQKVWMVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM----L 169 ID V+ DG AA GA AL + + KF L + K + + G+ + Sbjct: 137 IDVHVLDHDGNLMDAASMGAIAALMSA----KIPNAKFGLGEDAKLPLEDVPVGVTAVKI 192 Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 I+D E++ + G + +Q S T + D ++++AK++ Sbjct: 193 GSSIILDPSLDEENVASCKLTVITNKEGALAGMQKSG-VGTLTPDEVKYIVHIAKEK 248 >gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis] gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis] Length = 211 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 45/209 (21%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R ++ +R V A GS GDT +L A Sbjct: 5 RDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVL---------------------AA 43 Query: 62 EYGMLPRSTGNRVKREAV--------SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 YG P + N +A +G+ G +E + ++ R L+++ L+ + Sbjct: 44 VYGPKPGTKKNENPEKACIEVIWKPKTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTS 103 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CG 171 + V+ DG T AI A AL D M+ H+A C L G Sbjct: 104 VIVQVVHDDGALLTCAINAACAALVDAGIPMK--------------HLAVAICCCLSESG 149 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIV 200 Y I+D E+ + V +S H V Sbjct: 150 YVILDPTKLEEQKMKGFTYLVFPNSVHSV 178 >gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group] Length = 238 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 29/197 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R S TR A GS GDT +L + K G Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAA----------VYGPKPG---T 51 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 G P V + ++G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 52 RKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGMLC-GYPIVDLDY 179 DG AI AL + + H+A AI CG+L G I+D + Sbjct: 112 DGSLLPCAINACCAAL--------------VFAGIPLKHLAVAIGCGVLEDGEVILDTNK 157 Query: 180 GEDSTIDVDANFVMTDS 196 E+ + A+ V +S Sbjct: 158 AEEQQLKSFAHLVFPNS 174 >gi|222529049|ref|YP_002572931.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor bescii DSM 6725] gi|257096680|sp|B9MR54|PNP_ANATD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222455896|gb|ACM60158.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor bescii DSM 6725] Length = 701 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P STG E+ R GR R IG RAL V+ Sbjct: 373 RYMHHYNFPPFSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + +V+ ++G T A++ G+ +AL D +K VA IS G++ Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468 >gi|160902045|ref|YP_001567626.1| polynucleotide phosphorylase/polyadenylase [Petrotoga mobilis SJ95] gi|187610306|sp|A9BH73|PNP_PETMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160359689|gb|ABX31303.1| Polyribonucleotide nucleotidyltransferase [Petrotoga mobilis SJ95] Length = 695 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 R+ GR +++R+I+ + GS L G+T L T TL + + + +T + Sbjct: 321 RVDGRTCDEIRDITCEVGLIPRVHGSALFTRGETQSLGTVTLGAPLDVQVLDTIFSDEEK 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + VS R+ G + RA ++++ I + D Sbjct: 381 RFMLHYNFPPFSTGEVKRLRGVSRREIGHGH----LAERAHKNLIPSDEEFPYTIRVVSD 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +++++G + A++ A +AL D ++ HVA I+ G++ Sbjct: 437 ILESNGSSSMASVCSASLALMDA-------------GVPIQKHVAGIAMGLI 475 >gi|34540549|ref|NP_905028.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas gingivalis W83] gi|81417555|sp|Q7MW79|PNP_PORGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|34396862|gb|AAQ65927.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis W83] Length = 743 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ ++R I + GS + G+T LTT TL +EK+ + N Sbjct: 318 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ ++ ++I D Sbjct: 378 RFLLHYNFPPFSTGEARPQRGVGRREIGHGN----LAHRALKRMIPTDYPYVVRVI--SD 431 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 432 ILESNGSSSMATVCAGTLALRDA 454 >gi|33861747|ref|NP_893308.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81575818|sp|Q7V0R5|PNP_PROMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33640115|emb|CAE19650.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 721 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 34/237 (14%) Query: 12 REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 REI LT + + A G+ +++ GDT LL TAT K +P+ + + Sbjct: 13 REIRLTTGLYAPQAGGAVMIECGDTSLLVTATKTTKKQAADFLPLICDYEEKLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDEIQIVASCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 +TGA +A L+++ G +AA+ G++ I++ Y E Sbjct: 124 ADVLGVTGASIAT--------------LLAEIPFYGPMAAVRVGLIGDDFILNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + +++LIK Q++++ + Sbjct: 170 KGDLDIVVAGSPEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVSELIKAQENLLKD 223 >gi|257096721|sp|B2RIW6|PNP_PORG3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 743 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ ++R I + GS + G+T LTT TL +EK+ + N Sbjct: 318 RLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ ++ ++I D Sbjct: 378 RFLLHYNFPPFSTGEARPQRGVGRREIGHGN----LAHRALKRMIPTDYPYVVRVI--SD 431 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 432 ILESNGSSSMATVCAGTLALRDA 454 >gi|163855920|ref|YP_001630218.1| polynucleotide phosphorylase/polyadenylase [Bordetella petrii DSM 12804] gi|226702623|sp|A9IGJ9|PNP_BORPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|163259648|emb|CAP41949.1| polyribonucleotide nucleotidyltransferase [Bordetella petrii] Length = 719 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPIEIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL S++ I + Sbjct: 380 RFMLHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRALVSLLPAHEDFQYTIRL 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +A+ D ++D HVA ++ G++ Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPLQD-------------HVAGVAMGLIL 475 >gi|312134904|ref|YP_004002242.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor owensensis OL] gi|311774955|gb|ADQ04442.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor owensensis OL] Length = 701 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P STG E+ R GR R IG RAL V+ Sbjct: 373 RYMHHYNFPPFSTG-----ESKPIRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + +V+ ++G T A++ G+ +AL D +K VA IS G++ Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468 >gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis Bu] Length = 715 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G + +R + + L S + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|154686086|ref|YP_001421247.1| polynucleotide phosphorylase/polyadenylase [Bacillus amyloliquefaciens FZB42] gi|187470933|sp|A7Z4U0|PNP_BACA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|154351937|gb|ABS74016.1| PnpA [Bacillus amyloliquefaciens FZB42] Length = 707 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 35/229 (15%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEY--GMLPRSTGNRVK 75 +++K A G+ +V++GDT +L+TAT +E P+ + Y G +P G +K Sbjct: 23 QLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP---GGFIK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR ++ R+I R +R + Q+I + D + AA+ G+ + Sbjct: 80 RE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGSSL 136 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTIDVDANFVM 193 AL C+ + +G +A ++ G + G +++ +D E S D N ++ Sbjct: 137 AL--CVSDIP-----------FEGPIAGVTVGRIDGKFVINPTVDQLEKS----DINLIV 179 Query: 194 T---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D+ ++VE G+ E ++ + + I LI Q+++++ Sbjct: 180 AGTKDAINMVEA-GADE---VPEEIMLEAIMFGHEEIKRLIAFQEEIVA 224 >gi|124022312|ref|YP_001016619.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9303] gi|187610312|sp|A2C794|PNP_PROM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123962598|gb|ABM77354.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 721 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 32/236 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS +++ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRYAPQAGGSVMMECGDTSVLVTATRSTGREGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGSFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+TGA +A +G +AA+ G+L +++ Y E Sbjct: 124 ADVLAVTGASMA-------------TLLAGIPFQGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + + ++ + + +LIK Q+ ++ + Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LPEGDVIEAIDFGYEAVCELIKAQQSILKD 223 >gi|291542944|emb|CBL16054.1| polyribonucleotide nucleotidyltransferase [Ruminococcus bromii L2-63] Length = 739 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 25/165 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPRSTGN 72 T ++++ A G+CLV +GDT + T EK V + + + G +P G+ Sbjct: 26 TGKMTQLANGACLVHYGDTTVHVAVTASEKPREGVDFFPLSVDYEEKMYAVGKIP---GS 82 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR ++ R+I R +R + D S I+ + D A+ G Sbjct: 83 YLKRE---GRPSEKAILTSRVIDRPIRPLFDKSMRNDVSIVCTVMSVDPDCQPEIVAMIG 139 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVD 176 A +A+ +S V G ++ S GM+ G I++ Sbjct: 140 ASIAI--------------SISDVPWNGPISGCSVGMIDGEYIIN 170 >gi|296087634|emb|CBI34890.3| unnamed protein product [Vitis vinifera] Length = 905 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 21/173 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR N++R + GS L GDT +L T TL ++ G T Sbjct: 317 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 376 Query: 61 A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + I+ Sbjct: 377 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEEEFPYTVRINS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V+ +DG T A + G +AL D L+ HVA IS G++ Sbjct: 433 EVMASDGSTSMATVCGGSMALMDA-------------GIPLREHVAGISVGLV 472 >gi|198282699|ref|YP_002219020.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|226702590|sp|B5EMD4|PNP_ACIF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|198247220|gb|ACH82813.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 692 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL +E++ ++ Sbjct: 313 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALQGESRD 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RA+ +V+ + + + + Sbjct: 373 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAIAAVLPTDSEFPYSLRVVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 V++++G + A + GA +AL D LK VA ++ G++ Sbjct: 429 VLESNGSSSMATVCGASLALMDA-------------GVPLKAPVAGVAMGLI 467 >gi|218665115|ref|YP_002424891.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] gi|257096668|sp|B7J4D8|PNP_ACIF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218517328|gb|ACK77914.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 690 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL +E++ ++ Sbjct: 311 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALQGESRD 370 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RA+ +V+ + + + + Sbjct: 371 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAIAAVLPTDSEFPYSLRVVSE 426 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 V++++G + A + GA +AL D LK VA ++ G++ Sbjct: 427 VLESNGSSSMATVCGASLALMDA-------------GVPLKAPVAGVAMGLI 465 >gi|148240244|ref|YP_001225631.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH 7803] gi|187611326|sp|A5GN19|PNP_SYNPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|147848783|emb|CAK24334.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 7803] Length = 721 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 32/236 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS +++ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGSFMRRE---GRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++TGA +A G +AA+ G+L +++ Y E Sbjct: 124 ADVLSVTGASMA-------------TLLAGIPFYGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G IV V+ A + + ++ + + +LIK Q+ ++ + Sbjct: 171 GDLDLVVAGTPEG-IVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQESILKD 223 >gi|152979779|ref|YP_001353149.1| polynucleotide phosphorylase/polyadenylase [Janthinobacterium sp. Marseille] gi|187610276|sp|A6SY02|PNP_JANMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151279856|gb|ABR88266.1| polyribonucleotide nucleotidyltransferase [Janthinobacterium sp. Marseille] Length = 711 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 29/176 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I++ V GS L G+T L ATL E+K+ + Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113 ++ Y M P +TG +GR G + +EI R+ RAL + + S + Sbjct: 380 RFML-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALVAALPAPEDFSYSVR 431 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++ +++G + A++ G +AL D M+ HVA I+ G++ Sbjct: 432 LVSEITESNGSSSMASVCGGCLALMDAGVPMQS-------------HVAGIAMGLI 474 >gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group] gi|75243278|sp|Q84T68|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName: Full=Exosome component 5; AltName: Full=Ribosomal RNA-processing protein 46; Short=oRrp46 gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group] gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed [Oryza sativa Japonica Group] gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group] gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group] Length = 238 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 29/197 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R S TR A GS GDT +L + K G Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAA----------VYGPKPG---T 51 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 G P V + ++G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 52 RKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGMLC-GYPIVDLDY 179 DG AI AL + + H+A AI CG+L G I+D + Sbjct: 112 DGSLLPCAINACCAAL--------------VFAGIPLKHLAVAIGCGVLEDGEVILDTNK 157 Query: 180 GEDSTIDVDANFVMTDS 196 E+ + A+ V +S Sbjct: 158 AEEQQLKSFAHLVFPNS 174 >gi|206560707|ref|YP_002231472.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia J2315] gi|257096670|sp|B4E5M6|PNP_BURCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|198036749|emb|CAR52649.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia J2315] Length = 713 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G + +R + + L S + I + + Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 475 >gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1655] gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1655] Length = 713 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|88807542|ref|ZP_01123054.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 7805] gi|88788756|gb|EAR19911.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 7805] Length = 721 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 32/236 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS +++ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE GR R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGSFMRRE---GRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++TGA +A G +AA+ G+L +++ Y E Sbjct: 124 ADVLSVTGASMA-------------TLLAGIPFYGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G IV V+ A + + ++ + + +LIK Q+ ++ + Sbjct: 171 GDLDLVVAGTPEG-IVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQESILKD 223 >gi|156537299|ref|XP_001606070.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit Rrp41-like protein [Nasonia vitripennis] Length = 284 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 5/136 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R+ ++R++ + V A+GS ++ G T ++ +A ++P + G I Sbjct: 39 RVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICSAFDPREIPNKTSYSTQGEIFC 98 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ +T R + Q +E ++ RAL V + Q+ + V+ Sbjct: 99 EFKFASFATCKRKGHQ-----QDTEEKEYSLIMQRALEPAVCRHEFPNFQVDVYALVLDN 153 Query: 122 DGGTRTAAITGAWVAL 137 G AAI GA +AL Sbjct: 154 GGSALGAAIMGASLAL 169 >gi|145589238|ref|YP_001155835.1| polynucleotide phosphorylase/polyadenylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|187610308|sp|A4SXQ7|PNP_POLSQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145047644|gb|ABP34271.1| 3' exoribonuclease [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 722 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTARDEQIIDALEGEYRD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + + I + Sbjct: 376 RFMFHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPSAEDFAYSIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +A+ D +K HVA ++ G++ Sbjct: 429 VSEITESNGSSSMASVCGGCLAMMDA-------------GVPVKAHVAGVAMGLIL 471 >gi|107023192|ref|YP_621519.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia AU 1054] gi|116690274|ref|YP_835897.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia HI2424] gi|123244852|sp|Q1BV09|PNP_BURCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470943|sp|A0K927|PNP_BURCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|105893381|gb|ABF76546.1| 3' exoribonuclease [Burkholderia cenocepacia AU 1054] gi|116648363|gb|ABK09004.1| 3' exoribonuclease [Burkholderia cenocepacia HI2424] Length = 715 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G + +R + + L S + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49] Length = 713 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 380 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 433 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 475 >gi|171463523|ref|YP_001797636.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226702675|sp|B1XUJ5|PNP_POLNS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|171193061|gb|ACB44022.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 722 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTARDEQIIDVLEGEYRD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL V+ + + I + Sbjct: 376 RFMFHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPSAEDFAYSIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +A+ D +K HVA ++ G++ Sbjct: 429 VSEITESNGSSSMASVCGGCLAMMDA-------------GVPVKAHVAGVAMGLIL 471 >gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia vietnamiensis G4] gi|187470949|sp|A4JGD4|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4] Length = 715 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G + +R + + L S + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei K96243] gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 1710b] gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 668] gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 1106a] gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 305] gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei DM98] gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 14] gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 91] gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 9] gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei B7210] gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 7894] gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei NCTC 13177] gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 112] gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei BCC215] gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 576] gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|237811578|ref|YP_002896029.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei MSHR346] gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710a] gi|81380050|sp|Q63VN7|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123599745|sp|Q3JUB3|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470947|sp|A3NTA2|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470948|sp|A3N7L3|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei K96243] gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710b] gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 668] gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106a] gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 305] gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 576] gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei MSHR346] gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710a] Length = 713 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|254247654|ref|ZP_04940975.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia cenocepacia PC184] gi|124872430|gb|EAY64146.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia cenocepacia PC184] Length = 730 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 80/204 (39%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 337 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 396 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G + +R + + L S + I + + Sbjct: 397 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 452 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 453 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLILEGNKFAV 499 Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T+ G Sbjct: 500 LTDILGDEDHLGDMDFKVAGTEQG 523 >gi|225452398|ref|XP_002273777.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 997 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 21/173 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR N++R + GS L GDT +L T TL ++ G T Sbjct: 368 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 427 Query: 61 A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + I+ Sbjct: 428 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEEEFPYTVRINS 483 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V+ +DG T A + G +AL D L+ HVA IS G++ Sbjct: 484 EVMASDGSTSMATVCGGSMALMDA-------------GIPLREHVAGISVGLV 523 >gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 406e] gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 406e] Length = 713 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|187479141|ref|YP_787166.1| polynucleotide phosphorylase/polyadenylase [Bordetella avium 197N] gi|123765982|sp|Q2KWI6|PNP_BORA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115423728|emb|CAJ50278.1| polyribonucleotide nucleotidyltransferase [Bordetella avium 197N] Length = 718 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ R+L V+ I I Sbjct: 380 RFMLHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRSLVPVLPKPEDFQYTIRI 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +A+ D + D HVA ++ G++ Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPITD-------------HVAGVAMGLILENGK 479 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T++G Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTENG 506 >gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. 383] gi|123742554|sp|Q39EE1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383] Length = 715 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G + +R + + L S + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|33591966|ref|NP_879610.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis Tohama I] gi|33597949|ref|NP_885592.1| polynucleotide phosphorylase/polyadenylase [Bordetella parapertussis 12822] gi|81425386|sp|Q7VZU0|PNP_BORPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81426411|sp|Q7W570|PNP_BORPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33571610|emb|CAE41100.1| polyribonucleotide nucleotidyltransferase [Bordetella pertussis Tohama I] gi|33574378|emb|CAE38716.1| polyribonucleotide nucleotidyltransferase [Bordetella parapertussis] gi|332381383|gb|AEE66230.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis CS] Length = 719 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL ++ I + Sbjct: 380 RFMLHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRALLPLLPAPEDFQYTIRL 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173 ++ +++G + A++ G +A+ D D HVA ++ G++ Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPTND-------------HVAGVAMGLILDSGK 479 Query: 174 ---IVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T++G Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTETG 506 >gi|293603832|ref|ZP_06686247.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii ATCC 43553] gi|292817669|gb|EFF76735.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii ATCC 43553] Length = 720 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ R+L ++ I I Sbjct: 380 RFMMHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRSLIPLLPAPEDFQYTIRI 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +A+ D ++D HVA ++ G++ Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPVKD-------------HVAGVAMGLILDGGK 479 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T++G Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTENG 506 >gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia oklahomensis EO147] gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia oklahomensis C6786] Length = 714 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|73974737|ref|XP_857538.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 5 [Canis familiaris] Length = 238 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 17/156 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++R+I V A+GS ++ G+T L + + + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEA-----SGHRALVNC 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QIIIDCDVI 119 +Y STG R +R G R S E+ + + + + L+ L R QI I V+ Sbjct: 68 QYSSATFSTGERKRRP-----HGDRKSCEMGLHLRQTFEAAI-LTQLHPRSQIDIYVQVL 121 Query: 120 QADGGTRTAAITGAWVALHDCLQHMED----CSNKF 151 QADGGT A + A +A+ D M D CS F Sbjct: 122 QADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGF 157 >gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei ATCC 23344] gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Burkholderia mallei GB8 horse 4] gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei SAVP1] gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei NCTC 10229] gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei NCTC 10247] gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei PRL-20] gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 10399] gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH] gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU] gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei 2002721280] gi|81604650|sp|Q62IN1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470944|sp|A3MI97|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470945|sp|A2S463|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470946|sp|A1V2L2|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 23344] gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei SAVP1] gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC 10229] gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC 10247] gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH] gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU] gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei 2002721280] gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 10399] gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Burkholderia mallei GB8 horse 4] gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei PRL-20] Length = 713 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus] Length = 282 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R I L + A+GS ++ G+T ++ + +VP G + Sbjct: 37 RHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVFDPREVPNKTGYCVQGELFC 96 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P S R + Q +E ++ RAL V L + Q+ + V+ Sbjct: 97 EFKFAPFSHHKRKMHQ-----QDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDN 151 Query: 122 DG 123 G Sbjct: 152 GG 153 >gi|304440007|ref|ZP_07399900.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371499|gb|EFM25112.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 697 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%) Query: 12 REISLT-RRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63 RE+ +T +V++ A G+ LV++GDT +L TAT +K P+ + + + Sbjct: 12 REMRVTIGKVAEQANGAALVEYGDTVVLVTATASKKPREGIDFFPLSVDYEEKMYAV--- 68 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G +KRE GR ++ R+I R LR + Q++ + D Sbjct: 69 GKIP---GGFIKRE---GRPSEKAILTARLIDRPLRPLFPEGYRNDVQVVATALAVDQDN 122 Query: 124 GTRTAAITGAWVAL 137 A+ G+ +AL Sbjct: 123 QPDIVAMVGSSIAL 136 >gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria IOP40-10] gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria IOP40-10] Length = 714 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G + +R + + L S + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46 gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46 gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46 Length = 246 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 29/197 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R S TR A GS GDT +L + K G Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAA----------VYGPKPG---T 51 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 G P V + ++G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 52 RKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGMLC-GYPIVDLDY 179 DG AI AL + + H+A AI CG+L G I+D + Sbjct: 112 DGSLLPCAINACCAAL--------------VFAGIPLKHLAVAIGCGVLEDGEVILDTNK 157 Query: 180 GEDSTIDVDANFVMTDS 196 E+ + A+ V +S Sbjct: 158 AEEQQLKSFAHLVFPNS 174 >gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MEX-5] gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MEX-5] Length = 714 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G + +R + + L S + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|170733613|ref|YP_001765560.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia MC0-3] gi|226702627|sp|B1JVP5|PNP_BURCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169816855|gb|ACA91438.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia MC0-3] Length = 715 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G + +R + + L S + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis Bt4] Length = 713 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|152991076|ref|YP_001356798.1| polynucleotide phosphorylase/polyadenylase [Nitratiruptor sp. SB155-2] gi|187610315|sp|A6Q4N2|PNP_NITSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151422937|dbj|BAF70441.1| polyribonucleotide nucleotidyltransferase [Nitratiruptor sp. SB155-2] Length = 732 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 12/142 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR +R I + + A GSCL G+T L T+ EK + + + Sbjct: 345 RADGRGLKDVRPIDIKTNILPSAHGSCLFTRGETQALVVCTIGEKTDAQMYEMLTSKGPE 404 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P S G A R+ G + RAL VVD+ + +++ Sbjct: 405 YEHFMVHYNFPPFSVGEAKPISAPGRRELGHGN----LARRALEPVVDVPEDKTYRLV-- 458 Query: 116 CDVIQADGGTRTAAITGAWVAL 137 ++++++G + A + G +AL Sbjct: 459 SEILESNGSSSMATVCGGALAL 480 >gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis E264] gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis TXDOH] gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis E264] gi|123726649|sp|Q2SZN9|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia thailandensis E264] Length = 713 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|33602856|ref|NP_890416.1| polynucleotide phosphorylase/polyadenylase [Bordetella bronchiseptica RB50] gi|81429864|sp|Q7WCQ0|PNP_BORBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33577298|emb|CAE35855.1| polyribonucleotide nucleotidyltransferase [Bordetella bronchiseptica RB50] Length = 719 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL ++ I + Sbjct: 380 RFMLHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRALLPLLPAPEDFQYTIRL 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173 ++ +++G + A++ G +A+ D D HVA ++ G++ Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPTND-------------HVAGVAMGLILDSGK 479 Query: 174 ---IVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T++G Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTETG 506 >gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase/polyadenylase [Herminiimonas arsenicoxydans] gi|187610275|sp|A4G647|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Herminiimonas arsenicoxydans] Length = 710 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 29/176 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I++ V GS L G+T L ATL E+K+ + Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113 ++ Y M P +TG +GR G + +EI R+ RAL + + S + Sbjct: 380 RFML-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALIAALPAPEDFSYSVR 431 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++ +++G + A++ G +AL D M+ HVA I+ G++ Sbjct: 432 LVSEITESNGSSSMASVCGGCLALMDAGVPMQ-------------AHVAGIAMGLI 474 >gi|156093968|ref|XP_001613022.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148801896|gb|EDL43295.1| hypothetical protein, conserved [Plasmodium vivax] Length = 271 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 10/145 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R++ R+ N++R++ + Y++ SC G+T +L I K A Sbjct: 32 RINNRKNNEIRDMFIKLGSDGYSDASCFYSLGNTKILA----------LIYGPKPDSKNA 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 Y R G + I+ ++ + SV+ L I I C +IQ Sbjct: 82 TYDKGKVFLEIRSLNMNDDGANDESDENIKNLLIECVSSVILLDQYPQCSINIKCLIIQN 141 Query: 122 DGGTRTAAITGAWVALHDCLQHMED 146 DGG +A +T +AL + M D Sbjct: 142 DGGCLSATLTCISLALTNAQIKMRD 166 >gi|311104446|ref|YP_003977299.1| polyribonucleotide nucleotidyltransferase [Achromobacter xylosoxidans A8] gi|310759135|gb|ADP14584.1| polyribonucleotide nucleotidyltransferase [Achromobacter xylosoxidans A8] Length = 720 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ R+L ++ I I Sbjct: 380 RFMMHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRSLIPLLPAPEDFQYTIRI 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++ +++G + A++ G +A+ D ++D HVA ++ G++ Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPVKD-------------HVAGVAMGLILDGGK 479 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T++G Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTENG 506 >gi|239826663|ref|YP_002949287.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. WCH70] gi|259534128|sp|C5D9D5|PNP_GEOSW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|239806956|gb|ACS24021.1| 3' exoribonuclease [Geobacillus sp. WCH70] Length = 712 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 17/126 (13%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71 +++K A G+ LV++GDT +L TAT ++ +N +T Y G +P G Sbjct: 23 QLAKQANGAVLVRYGDTVVLNTATASKEA----KNVDFFPLTVNYEERLYAVGKIP---G 75 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE GR ++ R+I R +R + QI+ + D AA+ Sbjct: 76 GFIKRE---GRPSEKAILASRLIDRPIRPLFAEGFRNEVQIVSMVMSVDQDCSPEMAALF 132 Query: 132 GAWVAL 137 GA +AL Sbjct: 133 GASLAL 138 >gi|328553436|gb|AEB23928.1| polynucleotide phosphorylase/polyadenylase [Bacillus amyloliquefaciens TA208] gi|328911772|gb|AEB63368.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens LL3] Length = 707 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 35/231 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEY--GMLPRSTGNR 73 T +++K A G+ +V++GDT +L+TAT +E P+ + Y G +P G Sbjct: 21 TGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP---GGF 77 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 +KRE GR ++ R+I R +R + Q+I + + + AA+ G+ Sbjct: 78 IKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTIDVDANF 191 +AL C+ + +G +A ++ G + G I++ +D E S D N Sbjct: 135 SLAL--CVSDIP-----------FEGPIAGVTVGRIDGQFIINPTVDQLEKS----DINL 177 Query: 192 VMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ++ D+ ++VE G+ E ++ + + I LI Q+++++ Sbjct: 178 IVAGTKDAINMVEA-GADE---VPEEIMLEAIMFGHEEIKRLIAFQEEIVA 224 >gi|308173632|ref|YP_003920337.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens DSM 7] gi|307606496|emb|CBI42867.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens DSM 7] Length = 705 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 35/231 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEY--GMLPRSTGNR 73 T +++K A G+ +V++GDT +L+TAT +E P+ + Y G +P G Sbjct: 21 TGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP---GGF 77 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 +KRE GR ++ R+I R +R + Q+I + + + AA+ G+ Sbjct: 78 IKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTIDVDANF 191 +AL C+ + +G +A ++ G + G I++ +D E S D N Sbjct: 135 SLAL--CVSDIP-----------FEGPIAGVTVGRIDGQFIINPTVDQLEKS----DINL 177 Query: 192 VMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ++ D+ ++VE G+ E ++ + + I LI Q+++++ Sbjct: 178 IVAGTKDAINMVEA-GADE---VPEEIMLEAIMFGHEEIKRLIAFQEEIVA 224 >gi|295399860|ref|ZP_06809841.1| polyribonucleotide nucleotidyltransferase [Geobacillus thermoglucosidasius C56-YS93] gi|294978263|gb|EFG53860.1| polyribonucleotide nucleotidyltransferase [Geobacillus thermoglucosidasius C56-YS93] Length = 712 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 17/125 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 ++K A G+ LV++GDT +L+TAT ++ +N +T Y G +P G Sbjct: 24 LAKQANGAVLVRYGDTVVLSTATASKEA----KNVDFFPLTVNYEERLYAVGKIP---GG 76 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR ++ R+I R +R + QI+ + D AA+ G Sbjct: 77 FIKRE---GRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEMAALLG 133 Query: 133 AWVAL 137 + +AL Sbjct: 134 SSLAL 138 >gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis MSMB43] Length = 706 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 315 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 470 >gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta] Length = 282 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N+ R I L + A+GS ++ G+T ++ + ++P G + Sbjct: 37 RHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSVFDPREIPNKTGYCVQGELFC 96 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P S R+ +Q +E ++ RAL V L + Q+ + VI Sbjct: 97 EFKFAPFS-----HRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVID- 150 Query: 122 DGGT 125 +GG+ Sbjct: 151 NGGS 154 >gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria AMMD] gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria MC40-6] gi|122322637|sp|Q0BDC6|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702626|sp|B1YTR1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD] gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MC40-6] Length = 714 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G + +R + + L S + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|319778373|ref|YP_004129286.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis MCE9] gi|317108397|gb|ADU91143.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis MCE9] Length = 733 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR +R IS+ V GS L G+T L ATL K I ++ G + Sbjct: 320 RIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALVIATLGTKQDEQIVDSVMGEVRE 379 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 380 HFMLHYNMPPFATGEVGRFGSPKRREIGHG----RLAKRALIATLPNQDDFQYTIRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ G +A+ D +ED HVA ++ G++ Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVED-------------HVAGVAMGLI 474 >gi|114332122|ref|YP_748344.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas eutropha C91] gi|122313196|sp|Q0AE53|PNP_NITEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114309136|gb|ABI60379.1| 3' exoribonuclease [Nitrosomonas eutropha C91] Length = 705 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I++ V GS L G+T L TL E+K+ + Sbjct: 315 RIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALVVTTLGTARDEQKIDALQGDYSE 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQII 113 ++ Y M P +TG +GR G + +EI R+ RAL +V+ + Sbjct: 375 RFML-HYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALLAVLPPVEEFGYAMR 426 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +V +++G + A++ G +AL D LK HVA I+ G++ Sbjct: 427 VVSEVTESNGSSSMASVCGGCLALMDA-------------GAPLKAHVAGIAMGLI 469 >gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU121] Length = 699 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 96/230 (41%), Gaps = 35/230 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D AA Sbjct: 75 -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D G +A ++ G + G +++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FLGPIAGVNVGYVDGKYVINPTVAEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+ ++VE G++E ++ + D I L+ Q+++I Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHDEIKRLVAFQQEII 223 >gi|312111628|ref|YP_003989944.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1] gi|311216729|gb|ADP75333.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1] Length = 712 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 17/125 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 ++K A G+ LV++GDT +L+TAT ++ +N +T Y G +P G Sbjct: 24 LAKQANGAVLVRYGDTVVLSTATASKEA----KNVDFFPLTVNYEERLYAVGKIP---GG 76 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR ++ R+I R +R + QI+ + D AA+ G Sbjct: 77 FIKRE---GRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEMAALLG 133 Query: 133 AWVAL 137 + +AL Sbjct: 134 SSLAL 138 >gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49] gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49] gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1] Length = 303 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 7/138 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +MR + + A GS V G T L A + M + G I Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKL-NCAVYGPRPNMKHASQDRGSINL 105 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P +T ++A S R + + ++ +AL +VV L I + V++ Sbjct: 106 EFRFAPFAT---TGKDACSERD---TAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159 Query: 122 DGGTRTAAITGAWVALHD 139 DGG +AA+T +AL D Sbjct: 160 DGGLISAALTCIGLALAD 177 >gi|327262753|ref|XP_003216188.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Anolis carolinensis] Length = 765 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+GS +V+ GDT ++ TA + K +P+ + + A G +P N Sbjct: 42 KLARFADGSAVVQLGDTSVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 95 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128 ++RE G +EI R+I R++R + QI+ C+++ DG Sbjct: 96 YLRREL-----GSTDKEILTSRVIDRSIRPLFPAGYYYDTQIL--CNLLAVDGVNDPEVL 148 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA AL LS + G + A+ G++ G +V+ E S+ + Sbjct: 149 AINGASAAL--------------TLSDIPWNGPIGAVRVGLIDGEVVVNPTRKEMSSSTL 194 Query: 188 DANFVMTDSGHIVEVQGSAE 207 D +V ++ +AE Sbjct: 195 DLIVSSAPRSQVVMLEAAAE 214 >gi|256425469|ref|YP_003126122.1| polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis DSM 2588] gi|256040377|gb|ACU63921.1| Polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis DSM 2588] Length = 793 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 22/174 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR +Q+R +++ + GS L G+T LTT TL +E + +K+ Sbjct: 317 VRLDGRSLDQVRPLAMETDILPSPHGSALFTRGETQSLTTVTLGTPDDELLSESAATSKY 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG R+ G + R+L+ ++ S + + + Sbjct: 377 TKFILHYNFPPFSTGEVKPMRGPGRREVGHGN----LAMRSLKQMMPGSEY-AYTVRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 D+++++G + A + +AL D L HV+ ++ G++ Sbjct: 432 DILESNGSSSMATVCAGSLALMDA-------------GVPLPKHVSGVAMGLIS 472 >gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis N1568] Length = 706 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|307297863|ref|ZP_07577669.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium mesG1.Ag.4.2] gi|306917123|gb|EFN47505.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium mesG1.Ag.4.2] Length = 730 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 33/179 (18%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKH 56 +R+ GR+ N++R I++ + A GS L G+T L AT++E++ + Sbjct: 322 VRMDGRKHNEIRPINIELDLLPRAHGSALFTRGETQSLGIVTLGATMDEQIVDTMFEEGS 381 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 Y P STG VKR GR R IG R+L+++V Sbjct: 382 KSFMLHYNFPPFSTGE-VKRLRGPGR---------REIGHGHLAERSLKNIVPNGESFPY 431 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 I + +V++++G + A + ++L ME HVA ++ GM+ Sbjct: 432 TIRVVSEVLESNGSSSMATVCSGSLSLMAAGVPMEK-------------HVAGVAMGMI 477 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 38/231 (16%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71 +++K A+G+ ++++ D+ LLTT E+ + T +T EY G +P G Sbjct: 21 KMAKQADGAVVLRYADSVLLTTVNGNEQA---VPGTDFLPLTVEYQEKFYAAGKIP---G 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE+ R + R+I R +R + Q+I+ D I Sbjct: 75 GFLKRES---RPSDNAVLSARIIDRPIRPLFPDGMRNEIQVIVTVLSADPDNPPDIWGIM 131 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188 + + L+ +S + +G VA + G + G +V D E S +D+ Sbjct: 132 ASSLVLN--------------ISPIPFEGIVAGVQVGYVDGKYVVFPSADELERSELDI- 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 V + V+G A+ S++ L A + I L+ QK++IS Sbjct: 177 --VVAGTEDAVAMVEGEAKEV--SEEVMVGALEAAHEAIKSLVAFQKEIIS 223 >gi|221194578|ref|ZP_03567635.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC 49626] gi|221185482|gb|EEE17872.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC 49626] Length = 733 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 15/125 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73 ++K A G+C+VK GD+ +L TA + ++ P+ + +I Y + R G Sbjct: 22 LAKQATGACVVKCGDSTVLLTAVVSKERKDYDFFPLTV-----DFIEKMYA-VGRIPGGY 75 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 +KREA R ++ I RMI R LR QI+ V T ++ GA Sbjct: 76 LKREA---RPSEKATLIARMIDRPLRPSFPEGFRNEVQIVATSLVADQINAVDTISVMGA 132 Query: 134 WVALH 138 ALH Sbjct: 133 SAALH 137 >gi|150021487|ref|YP_001306841.1| polynucleotide phosphorylase/polyadenylase [Thermosipho melanesiensis BI429] gi|187611329|sp|A6LNF5|PNP_THEM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149794008|gb|ABR31456.1| Polyribonucleotide nucleotidyltransferase [Thermosipho melanesiensis BI429] Length = 699 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 38/230 (16%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71 +V+K + G+ V+FGD+ +L TA + ++V I +T EY G +P G Sbjct: 22 KVAKQSSGAAWVQFGDSVVLATANISDRV---IEGVDFVPLTVEYQEKFYAAGKIP---G 75 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE G+ + R+I R +R + Q+I+ V+ DG T +T Sbjct: 76 GFIKRE---GKPTESAILSARLIDRPIRPLFPKYLRNDVQLIV--TVLSVDGDT-PPDVT 129 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188 G + A S S++ +G VA + G + G ++ + ++S +D+ Sbjct: 130 GIFAA-----------SLALNFSKIPFQGIVAGVRIGYVDGEFVIFPTEEQLKNSKLDI- 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 V I V+G A+ T ++ L +A + I LI+ +++++ Sbjct: 178 --VVAGSKDAITMVEGEAKEVT--EEEMVQALMVAHEAIKKLIEFEEEIL 223 >gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis MC58] gi|81784821|sp|Q9K062|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis MC58] Length = 707 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 317 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472 >gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M01-240355] Length = 706 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|294670819|ref|ZP_06735675.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307306|gb|EFE48549.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 701 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALIAVLPEPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|326528505|dbj|BAJ93434.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 726 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 29/199 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+ +++R + GS L GDT +L T TL ++ G T Sbjct: 112 LRVDGRRLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 171 Query: 61 A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + ++ Sbjct: 172 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPEGDFPYTVRVNS 227 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ +DG T A++ G +AL D ++ HVA +S G++ Sbjct: 228 EVMASDGSTSMASVCGGSMALMDA-------------GIPVREHVAGVSVGLVS------ 268 Query: 177 LDYGEDSTIDVDANFVMTD 195 + +T D+ + ++TD Sbjct: 269 --EADPTTGDISSYRILTD 285 >gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M01-240013] gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M04-240196] Length = 706 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes HOxBLS] gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes HOxBLS] Length = 707 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 29/176 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I++ V GS L G+T L ATL +K+ + Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTSRDNQKIDALMGEYSD 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113 ++ Y M P +TG +GR G + +EI R+ RAL + + S I Sbjct: 380 AFMM-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALVACLPSQDEFSYSIR 431 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++++++G + A++ G +AL D +K HVA I+ G++ Sbjct: 432 LVSEIMESNGSSSMASVCGGSLALMDA-------------GVPVKTHVAGIAMGLI 474 >gi|255658262|ref|ZP_05403671.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida DSM 20544] gi|260849574|gb|EEX69581.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida DSM 20544] Length = 689 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 10/123 (8%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74 +++K A G+ LV++GDT +L TAT E V + + G +P G + Sbjct: 19 QLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDYEEKMYAAGKIP---GGFI 75 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE GR + R+I R +R + QI+ ++ D AA+ GA Sbjct: 76 KRE---GRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNAPELAAMIGAS 132 Query: 135 VAL 137 AL Sbjct: 133 CAL 135 >gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] Length = 948 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR + +R I+ + A GS L G+T L ATL +KV + + Sbjct: 450 RSDGRNADGIRPINSRCGLLPRAHGSALFTRGETQSLAVATLGDKQMAQKVDNLVDVDEF 509 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A S R+ G +R + L S D I ++ Sbjct: 510 KRFYLQYSFPPSSVGEVGRMGAPSRREIGHGMLAERALEPILPSEADF----PYTIRVES 565 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 + +++G + A++ G +AL D +K +A I+ GM+ Sbjct: 566 TITESNGSSSMASVCGGCLALQDA-------------GVPVKCSIAGIAMGMVLDTEEFG 612 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D + G Sbjct: 613 GDGTPLILSDITGSEDASGDMDFKVAGNEDG 643 >gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis CU385] Length = 706 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|220909628|ref|YP_002484939.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC 7425] gi|254782716|sp|B8HXN3|PNP_CYAP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219866239|gb|ACL46578.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7425] Length = 715 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 52/237 (21%), Positives = 102/237 (43%), Gaps = 34/237 (14%) Query: 12 REISLT-RRVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 R+I +T R + A G+ +++ GDT +L TAT + +P+ + + + Sbjct: 13 RDIHITIGRFAPQAGGTVMIRSGDTAVLVTATRAAAREGIDFLPLLVDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G ++RE GR ++ I R+I R LR + Q++ + Sbjct: 70 ---RIPGGFLRRE---GRPPEKATLISRLIDRPLRPLFPGWLRDDIQVVATTLSMDEQVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA VA+ L+Q+ G +AA+ G++ I++ Y E Sbjct: 124 PDVLAVTGASVAVL--------------LAQIPFNGPMAAVRVGLVGDDFIINPTYSEIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + +G +V V+ A + + ++ + + DLI+ Q+++++ Sbjct: 170 AGDLDLVVAGSPAG-VVMVEAGANQ--LPEQDVIEAIDFGYEAVRDLIRAQQELLTE 223 >gi|217976462|ref|YP_002360609.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris BL2] gi|254782729|sp|B8EP09|PNP_METSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217501838|gb|ACK49247.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris BL2] Length = 714 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 20/179 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I + A GS L G+T L ATL +E+ + T Sbjct: 315 VRIDGRDLKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 Y P S G +GR G +R IG RA+R ++ +A Sbjct: 375 ERFLLHYNFPPYSVGE-------TGRMGSPG---RREIGHGKLAWRAVRPMLPTAAEFPY 424 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 I I ++ +++G + A + G+ +AL D ++ + + +L+G A+ +L Sbjct: 425 TIRIVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDIL 483 >gi|292670908|ref|ZP_06604334.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC 43541] gi|292647529|gb|EFF65501.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC 43541] Length = 700 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 10/123 (8%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74 +++K A G+ LV++GDT +L TAT E V + + G +P G + Sbjct: 30 KMAKQANGAVLVRYGDTVVLVTATASSAPREGVDFFPLTVDYEEKMYAVGKIP---GGFI 86 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE GR + R+I R +R + QI+ ++ D AA+ GA Sbjct: 87 KRE---GRPSNDAILCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPPEIAAMIGAS 143 Query: 135 VAL 137 AL Sbjct: 144 CAL 146 >gi|193212209|ref|YP_001998162.1| polynucleotide phosphorylase/polyadenylase [Chlorobaculum parvum NCIB 8327] gi|226702632|sp|B3QM09|PNP_CHLP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193085686|gb|ACF10962.1| Polyribonucleotide nucleotidyltransferase [Chlorobaculum parvum NCIB 8327] Length = 732 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 20/148 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR Q+R IS+ + A GS L G+T L T TL K +T K Sbjct: 331 RLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDTLTDDKDK 390 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P S G +GR GG +R IG RA++ V+ Sbjct: 391 RFMLHYNFPPFSVGE-------TGRVGGTG---RREIGHGNLAERAIKMVMPAEQEFPYT 440 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHD 139 + + D+++++G + A++ G +A D Sbjct: 441 VRLVSDILESNGSSSMASVCGGTLAAMD 468 >gi|68171419|ref|ZP_00544810.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis str. Sapulpa] gi|67999161|gb|EAM85820.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis str. Sapulpa] Length = 554 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +++R+I + V A GS L G+T L L +E++ + + Sbjct: 77 RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 136 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P + G A R+ G ++ RA+R V+ + I + + Sbjct: 137 NFLLHYNFPPYAVGESAALRAPGRREIGHG----KLAWRAIRYVLPEKSDFPYTIRVVSE 192 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++DG + A + GA +AL D +K VA I+ G++ Sbjct: 193 ITESDGSSSMATVCGASLALMDT-------------GVPIKSPVAGIAMGLI 231 >gi|258516323|ref|YP_003192545.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum acetoxidans DSM 771] gi|257780028|gb|ACV63922.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum acetoxidans DSM 771] Length = 746 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 24/132 (18%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG----WITAEY-------GM 65 T RV+K A G+ LV +GDT +L+TAT+ R + G +T EY G Sbjct: 19 TGRVAKQAGGAVLVAYGDTVVLSTATMS-------RTLREGIDFFPLTVEYEERLYAVGR 71 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P G +KREA S R+I R++R + QII + D Sbjct: 72 IP---GGFIKREARPSENAILS---CRLIDRSIRPLFPKGFRNETQIINTIMSVDQDHAP 125 Query: 126 RTAAITGAWVAL 137 AA+ G AL Sbjct: 126 EMAAMIGTSAAL 137 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 8/144 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +++R IS+ V GS L G T +L+ TL EE++ + + Sbjct: 322 IRMDGRALDEVRPISVEAGVLPRTHGSGLFTRGQTQILSVVTLGAISEEQILDGLGTEES 381 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + R+ G + GRAL ++ I + Sbjct: 382 KRYMHHYNFPPFSTGETKMMRSPGRREIGHGA----LAGRALEPMIPGEEEFPYTIRVVS 437 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 + ++++G T ++ G+ +AL D Sbjct: 438 EALESNGSTSMGSVCGSTLALMDA 461 >gi|218282268|ref|ZP_03488567.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989] gi|218216736|gb|EEC90274.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989] Length = 713 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 26/227 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T ++K A+G+ ++++GDT L+TA +E + + G +P G Sbjct: 19 TGEIAKQADGAVIIRYGDTVTLSTACASNQAKEGIDFFPLTVSFEEKLYSVGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 ++RE GR + RMI R +R + Q++ + D AA+ G Sbjct: 76 FLRRE---GRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDASPEMAAMFG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 A +AL C+ + G +A G + G + + + D+D Sbjct: 133 ASLAL--CISDIP-----------FNGPIAGCKVGRINGELVANPTVAQMEESDIDLTVA 179 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T + G+ E S++ A L ++I L Q+++++ Sbjct: 180 GTAQALNMVEAGAKE---VSEEDMLAALMFGHEQIKKLCAFQEEIVA 223 >gi|187610328|sp|A1KT19|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha710] gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M6190] gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis ES14902] Length = 706 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1] gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1] Length = 706 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 30/177 (16%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ ++++GDT +L+TAT ++ P+ + + + G +P G Sbjct: 23 QLAKQANGAVMIRYGDTAVLSTATASKQPKPLDFFPLTVNYEERLYAV---GKIP---GG 76 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + Q+I + D + AA+ G Sbjct: 77 FIKRE---GRPSERAVLTSRLIDRPIRPLFADGFRNEVQVISMVMSVDQDCSSEMAAMFG 133 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDV 187 + +AL + D +G +A + G++ G I+ ++D E S I++ Sbjct: 134 SSLAL-----TVSDIP--------FEGPIAGVQVGLIDGEFIINPNVDQLEKSEINL 177 >gi|157164996|ref|YP_001467328.1| polynucleotide phosphorylase/polyadenylase [Campylobacter concisus 13826] gi|187470951|sp|A7ZEX0|PNP_CAMC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|112801842|gb|EAT99186.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter concisus 13826] Length = 732 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 4/139 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58 +R GR ++R IS+ V A GSCL G T L ATL + M+ T+ Sbjct: 343 IRADGRGLEEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDSDAQMYDILTEKAP 402 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + ++ G V + G R + RAL +DL++ + +++ ++ Sbjct: 403 LVEKFMFNYNFPGFSVGEASPLKAPGRRELGHGNLAKRALAPSIDLASPYTIRVV--SEI 460 Query: 119 IQADGGTRTAAITGAWVAL 137 ++++G + A++ G +AL Sbjct: 461 LESNGSSSMASVCGGSLAL 479 >gi|90422008|ref|YP_530378.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris BisB18] gi|122477503|sp|Q21C27|PNP_RHOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|90104022|gb|ABD86059.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris BisB18] Length = 715 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 24/231 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T L TL +E+ + T Sbjct: 316 RIDGRDSKTVRNIVAQVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+ V+ + + Sbjct: 376 TFLLHYNFPPYSVGE-------TGRMGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTLRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ GA +AL D ++ + + +L+G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T+ G I +Q + A +++ L AKD Sbjct: 485 -----DEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKD 529 >gi|196231533|ref|ZP_03130391.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus Ellin428] gi|196224386|gb|EDY18898.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus Ellin428] Length = 716 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 30/227 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++K A+G+ V+ G+T + +A T++E + + A G P G Sbjct: 19 TGKLAKLADGAVTVRSGETIVFISAVSATTVKEGQDFFPLTVDYREKAAAVGKFP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--AAI 130 KRE GR + RM R LR + L QII ++ ADG I Sbjct: 76 YFKRE---GRPSEKEILTCRMTDRPLRPLFPKGYLYDTQII--GVLLSADGEVDPDILFI 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL + D G V A+ G + G I + + + + D+D Sbjct: 131 NGASAAL-----MVSDIP--------FAGPVGAVRVGRVNGQFIANPTHSQMADSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +V ++ ++ ++G+ + ++ F A L+ A+ ++ ++ LQ+++ Sbjct: 178 YV-GNATDVIMIEGAGDEV--PEEQFIAALHFAQTEVSKIVALQQEL 221 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 28/179 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R++S + + GS L + G+T + ATL P G+ Sbjct: 314 RCDGRGLDQIRDLSAEVGLLPRSHGSALFQRGETQAVALATL---APADEAQELDGYTGG 370 Query: 62 E--------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 E Y P S G + + R+ G +R + + V I Sbjct: 371 ETTKRFILHYNFPPFSVGETGRTGSPGRREIGHGALAERSVEPVIPDVTKF----PYAIR 426 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G T A++ +AL D LK VA ISCG++ + Sbjct: 427 VSSEVMESNGSTSMASVCSGVLALLDA-------------GVPLKKSVAGISCGLVTEF 472 >gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL YB-4239] gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL YB-4239] Length = 244 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 23/187 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKH 56 +R+ GR+ N++R R++ + ++GS V+ G+T ++ T E N Sbjct: 12 LRIDGRRWNELRRFEC--RINTHPNSSDGSSYVEQGNTKVICTVIGPMEPTSRAQMNQDR 69 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 + + ST R KR + R E++ + R ++ L I I+ Sbjct: 70 ANVEVNLTIANFSTFERKKR----SKTEKRLVELRTTLERTFEQLILLHLYPRTNITINV 125 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 V+ DGG A +AL D M D +V++ISCG+ P++D Sbjct: 126 QVLNQDGGMLAAVTNSITLALMDAGIAMYD-------------YVSSISCGLHDQSPLLD 172 Query: 177 LDYGEDS 183 L+ E++ Sbjct: 173 LNNLEEN 179 >gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis FAM18] gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria meningitidis FAM18] Length = 711 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 321 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 380 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 381 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 437 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 476 >gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum] Length = 897 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNT----KH 56 R GR ++R I+ + + A GS L G+T L ATL + K+ I N + Sbjct: 444 RSDGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRINNLIEVDDY 503 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G +R + L S D I ++ Sbjct: 504 KRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPSDNDF----PYTIRVES 559 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 + +++G + A++ G +AL D +K +A I+ G++ Sbjct: 560 TITESNGSSSMASVCGGCLALQDA-------------GVPIKCSIAGIAMGLVLDTKEFG 606 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D + G Sbjct: 607 GDGTPLILSDITGSEDASGDMDFKVAGNEDG 637 >gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis ATCC 13091] gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis ATCC 13091] Length = 706 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|225025578|ref|ZP_03714770.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC 23834] gi|224941616|gb|EEG22825.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC 23834] Length = 701 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I++ V GS L G+T L ATL + I + G T Sbjct: 316 RIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGECGRMGAPKRREIGHG----RLAKRALLGVLPSPEEFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|332970461|gb|EGK09453.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC 23330] Length = 708 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|325688998|gb|EGD31006.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK115] gi|325695521|gb|EGD37421.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK150] Length = 733 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 31/229 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 G+ +AL + D G +A + G + G I++ + ++ Sbjct: 130 FGSSLAL-----SISDIP--------FNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELT 176 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T + G+ E S+D L + + +LI Q+++I+ Sbjct: 177 VAGTKEAINMVESGAKE---LSEDIMLEALLKGHEAVKELIAFQEEIIA 222 >gi|189499525|ref|YP_001958995.1| polynucleotide phosphorylase/polyadenylase [Chlorobium phaeobacteroides BS1] gi|226702633|sp|B3EMN6|PNP_CHLPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189494966|gb|ACE03514.1| Polyribonucleotide nucleotidyltransferase [Chlorobium phaeobacteroides BS1] Length = 734 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 22/149 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56 RL GR+ ++R IS+ + A GS L G+T L TL K + + +T+ Sbjct: 332 RLDGRKLEEVRPISIELGLIPRAHGSALFTRGETQALVVLTLGTKKDAQMIDTLLDDTEK 391 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 ++ Y P S G +GR GG +R IG RA++ VV + Sbjct: 392 RFML-HYNFPPFSVGE-------TGRVGGVG---RREIGHGNLAERAVKKVVPSESEFPY 440 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHD 139 I + ++++++G + A++ GA +A D Sbjct: 441 TIRLVSEILESNGSSSMASVCGATLAAMD 469 >gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG] Length = 303 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 7/138 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +MR + + A GS V G T L A + M + G I Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKL-NCAVYGPRPNMKHASQDRGSINL 105 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P +T ++A S R + + ++ +AL +VV L I + V++ Sbjct: 106 EFRFAPFAT---TGKDACSERD---TAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159 Query: 122 DGGTRTAAITGAWVALHD 139 DGG +AA+T +AL D Sbjct: 160 DGGLISAALTCIGLALAD 177 >gi|88658296|ref|YP_507529.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia chaffeensis str. Arkansas] gi|123493143|sp|Q2GGA4|PNP_EHRCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88599753|gb|ABD45222.1| polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis str. Arkansas] Length = 796 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +++R+I + V A GS L G+T L L +E++ + + Sbjct: 319 RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P + G A R+ G ++ RA+R V+ + I + + Sbjct: 379 NFLLHYNFPPYAVGESAALRAPGRREIGHG----KLAWRAIRYVLPEKSDFPYTIRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + ++DG + A + GA +AL D Sbjct: 435 ITESDGSSSMATVCGASLALMDT 457 >gi|238926818|ref|ZP_04658578.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei ATCC 43531] gi|238885350|gb|EEQ48988.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei ATCC 43531] Length = 689 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 10/123 (8%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74 +++K A G+ LV++GDT +L TAT E V + + G +P G + Sbjct: 19 KMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDYEEKMYAAGKIP---GGFI 75 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE GR + R+I R +R + QI+ ++ D AA+ GA Sbjct: 76 KRE---GRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPAEIAAMLGAS 132 Query: 135 VAL 137 AL Sbjct: 133 CAL 135 >gi|222055786|ref|YP_002538148.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32] gi|257096693|sp|B9M1G5|PNP_GEOSF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221565075|gb|ACM21047.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32] Length = 696 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 10/144 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R+I+ + A GS L G+T L ATL E+++ +K Sbjct: 312 RIDGRDTKTIRQITTEVGLLPRAHGSALFTRGETQALVVATLGTSIDEQRIDSLFGESKK 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G R A R+ G + RAL VV I I Sbjct: 372 RFLL-HYNFPPFSVGETSFRLAPGRREIGHGM----LAERALARVVPKHESFPYTIRIVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A++ G +++ D Sbjct: 427 DILESNGSSSMASVCGGSMSMMDA 450 >gi|325266482|ref|ZP_08133159.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans ATCC 33394] gi|324981925|gb|EGC17560.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans ATCC 33394] Length = 705 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ + + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFNYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|304436486|ref|ZP_07396460.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370532|gb|EFM24183.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 690 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 10/123 (8%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74 +++K A G+ LV++GDT +L TAT E V + + G +P G + Sbjct: 19 KMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDYEEKMYAAGKIP---GGFI 75 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE GR + R+I R +R + QI+ ++ D AA+ GA Sbjct: 76 KRE---GRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPPEIAAMFGAS 132 Query: 135 VAL 137 AL Sbjct: 133 CAL 135 >gi|329724343|gb|EGG60855.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU144] Length = 701 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D AA Sbjct: 75 -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G +++ + +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYVINPSVADKEISRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+++I + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225 >gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase; PNPase; CAP87K) [Neisseria meningitidis 8013] Length = 706 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] Length = 735 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L TL +E++ + + Sbjct: 333 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGLTGEQRE 392 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL +V+ + + Sbjct: 393 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALTAVLPNEEDFQYTMRV 445 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ G ++L D ++D + + +G+ A+ + Sbjct: 446 VSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKFAV---------L 496 Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197 D+ ED D+D TD G Sbjct: 497 TDILGDEDHLGDMDFKVAGTDHG 519 >gi|218884634|ref|YP_002429016.1| exosome complex RNA-binding protein Rrp42 [Desulfurococcus kamchatkensis 1221n] gi|218766250|gb|ACL11649.1| Probable exosome complex exonuclease 2 [Desulfurococcus kamchatkensis 1221n] Length = 286 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 55/255 (21%), Positives = 99/255 (38%), Gaps = 23/255 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR R I + A GS LVK G T ++ LE + P R G + Sbjct: 28 RIDGRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEPFPDR-PGEGVLQV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113 +P ++ + G + E+ R+I R+LR V L AL + Sbjct: 87 HAEFVPLASPS-----FEPGPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIVWSVY 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQV-------LKGHVAAIS 165 D ++ G + + +AL + + N +++ + VA ++ Sbjct: 142 TDIYLVDHQGNIIDTGMLASMLALATSRIPELIKGENGYKVDHTKYVGPLPINTLVATVT 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 G+ IVD E++ ID + +SG I +Q + FS+ + +A Sbjct: 202 MGIYNDVIIVDPLLEEEAVIDSFITIAIDESGRICGIQKRGMKG-FSRSVLDNTIEIALS 260 Query: 226 RIADLIKLQKDVISN 240 + +L+ L K +++N Sbjct: 261 KGRELVDLMKKILNN 275 >gi|27467869|ref|NP_764506.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis ATCC 12228] gi|57866764|ref|YP_188423.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis RP62A] gi|251810705|ref|ZP_04825178.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis BCM-HMP0060] gi|282876294|ref|ZP_06285161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis SK135] gi|293366762|ref|ZP_06613438.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|81674891|sp|Q5HPR7|PNP_STAEQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81843823|sp|Q8CST1|PNP_STAES RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27315414|gb|AAO04548.1|AE016747_45 polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis ATCC 12228] gi|57637422|gb|AAW54210.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis RP62A] gi|251805865|gb|EES58522.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis BCM-HMP0060] gi|281295319|gb|EFA87846.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis SK135] gi|291319063|gb|EFE59433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329736337|gb|EGG72609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU028] gi|329736660|gb|EGG72926.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU045] Length = 701 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D AA Sbjct: 75 -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G +++ + +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYVINPSVADKEISRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+++I + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225 >gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales bacterium 1_1_47] gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales bacterium 1_1_47] Length = 724 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L TL +E++ + + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGLTGEQRE 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL +V+ + + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALTAVLPNEEDFQYTMRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ G ++L D ++D + + +G+ A+ + Sbjct: 435 VSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKFAV---------L 485 Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197 D+ ED D+D TD G Sbjct: 486 TDILGDEDHLGDMDFKVAGTDHG 508 >gi|296223817|ref|XP_002757788.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial [Callithrix jacchus] Length = 784 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+GS +V+ GDT ++ T + K +P+ + + A G +P N Sbjct: 62 KLARFADGSAVVQSGDTAVMVTVVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +EI R+I R++R + Q++ C+++ DG Sbjct: 116 YLRREI-----GTSDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDVL 168 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA VAL LS + G V A+ GM+ G +V+ E S+ + Sbjct: 169 AINGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTL 214 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234 >gi|262197030|ref|YP_003268239.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM 14365] gi|262080377|gb|ACY16346.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM 14365] Length = 711 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 10/144 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +++R IS + A GS L G+T L +AT+ E+K+ + + Sbjct: 321 RIDGRAYDEIRAISCEVGILPSAHGSALFTRGETQALVSATMGTRYDEQKLDTLLGGMQK 380 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 + Y P TG + S R+ G +R I + + D + + Sbjct: 381 PFFL-HYNFPPFCTGEAKPIRSTSRRELGHGNLAERSIAQVMPEREDF----PYTVRVVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 ++++++G + A++ GA ++L D Sbjct: 436 EILESNGSSSMASVCGASLSLMDA 459 >gi|328950321|ref|YP_004367656.1| Polyribonucleotide nucleotidyltransferase [Marinithermus hydrothermalis DSM 14884] gi|328450645|gb|AEB11546.1| Polyribonucleotide nucleotidyltransferase [Marinithermus hydrothermalis DSM 14884] Length = 722 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 26/205 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +R+I + V A GS + G+T +L T TL +E++ + + Sbjct: 333 RADGRGPTDIRDIWIEVDVLPRAHGSAIFTRGETQVLGTVTLGTGRDEQIIDDLGIDESD 392 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + S R+ G + RALR V+ I I D Sbjct: 393 PFLVHYNFPPYSTGEVKRLRGTSRREVGHGN----LAKRALRPVLPDKDAFPYTIRIVGD 448 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V++++G + A +AL D +K VA I+ G++ G P+ Sbjct: 449 VLESNGSSSMATTCAGCLALMDA-------------GVPIKKPVAGIAMGLVMPETGEPV 495 Query: 175 V--DLDYGEDSTIDVDANFVMTDSG 197 + D+ ED+ D+D T G Sbjct: 496 ILTDILGMEDALGDMDFKVTGTRDG 520 >gi|119489572|ref|ZP_01622332.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106] gi|119454484|gb|EAW35632.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106] Length = 719 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 33/225 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73 ++ A G+ L++ GDT +L TAT E +P+ + + + R G Sbjct: 22 LAPQAGGAVLIESGDTSVLVTATRAEGRPGIDFLPLLVDYEERLYAGG------RIPGGF 75 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++RE GR R R+I R LR ++ QI+ + A+TGA Sbjct: 76 LRRE---GRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPDVLAVTGA 132 Query: 134 WVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 VA+ ++Q+ G +AA+ G+L I++ Y E D+D Sbjct: 133 SVAV--------------VMAQIPFYGPMAAVRVGLLGDDFIINPTYREVRNGDLDLVVA 178 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + G +V V+ A + + ++ + + DLIK Q+++ Sbjct: 179 GSPEG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVCDLIKAQQEI 220 >gi|242242557|ref|ZP_04797002.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis W23144] gi|242233984|gb|EES36296.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis W23144] gi|319401436|gb|EFV89646.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis FRI909] Length = 701 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D AA Sbjct: 75 -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G +++ + +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYVINPSVADKEISRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+++I + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225 >gi|222100220|ref|YP_002534788.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana DSM 4359] gi|254782743|sp|B9K8Y9|PNP_THENN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221572610|gb|ACM23422.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana DSM 4359] Length = 707 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 34/230 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71 +V+K + G+ LV+FGDT +L TA + +KV I +T E+ G +P G Sbjct: 19 KVAKQSSGAVLVRFGDTAVLATANISDKV---IEGIDFVPLTVEFQERFYAAGKIP---G 72 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE G+ + R+I R +R + Q+I+ V+ AD + Sbjct: 73 GFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEIQVIV--TVLSADPNVPPDVVG 127 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 V+L +S++ +G VA I G G + ED + Sbjct: 128 IFAVSL------------ALNVSKIPFEGIVAGIRIGYRDGQ-FIAFPTEEDIEKGLMDI 174 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 V + V+G A+ S++ L A I +L+ Q++++S Sbjct: 175 TVAGTKDAVTMVEGEAKEV--SEEDMVKALRFAHSVIKELVDFQEEILSE 222 >gi|21228726|ref|NP_634648.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina mazei Go1] gi|29336794|sp|Q8PTT7|ECX2_METMA RecName: Full=Probable exosome complex exonuclease 2 gi|20907235|gb|AAM32320.1| Ribonuclease [Methanosarcina mazei Go1] Length = 266 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 49/237 (20%), Positives = 90/237 (37%), Gaps = 15/237 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR RE+ L V AEGS V G+T +L L+ P + + G I Sbjct: 25 RQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113 + P ++ E G + E+ R++ R +R +D+ L G + Sbjct: 84 NLELNPIAS-----PEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID ++ DG A+ A AL + E + +K I+ + Sbjct: 139 IDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGLGENVPLAMKEMPVGITLAKIGSKL 198 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +VD E++ + V + G + +Q ++ F +++A ++ A++ Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGP-VPLTEAELFEAIDMAIEKAAEI 254 >gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide adenylyltransferase [Burkholderia rhizoxinica HKI 454] gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) / Polynucleotide adenylyltransferase (EC 2.7.7.19) [Burkholderia rhizoxinica HKI 454] Length = 768 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ I Sbjct: 366 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVATLGTKGDEQIIDAIEGEYRE 425 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ R+L + I + Sbjct: 426 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRSLVPCLPGDDEFGYTIRV 478 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 479 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 521 >gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864] Length = 227 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 35/241 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+RE+S+ V A+GS DT LT P ++++K Sbjct: 4 RADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAV----YGPAEVKSSKE----- 54 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +L ++T V R +G G + ++ +AL V+ +A I + V+ Sbjct: 55 ---LLDKATVQTVFRPK-TGLAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHD 110 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-------I 174 DG A+ A +AL D +S VL AA++C L + Sbjct: 111 DGALLACALNSASMALIDA---------GVPMSAVL----AAVTCAWLPAADGSSERRLL 157 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 +D E + A F + E+ S+ + D +F + +A+ A+++ Sbjct: 158 LDPTLEEQTAATSIATFAFESTNQ--EIVFSSTEGQLTVDEYFYTIEMAQKAAANVLAFM 215 Query: 235 K 235 + Sbjct: 216 R 216 >gi|310827652|ref|YP_003960009.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612] gi|308739386|gb|ADO37046.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612] Length = 692 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 32/227 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTGN 72 V++ A+GS ++++G+T +L A +K P+ + + + G +P G Sbjct: 20 VAQLAKGSAMIRYGETSVLAIAAASKKPREGMDFFPLSVDYEEKQYAV---GKIP---GG 73 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR ++ R+I R +R + Q++ ++ D AA+ G Sbjct: 74 FLKRE---GRPSEKAILNSRLIDRPIRPLFPKGFRNDVQVVTTVMSVEQDNAPEIAAMIG 130 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 A +AL + D G +++ G++ G I++ + D+ Sbjct: 131 ASIAL-----SISDIP--------FDGPTGSVAVGLIDGEFILNPTEAQREVSDLSLTVA 177 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T ++ G+ E S++ + A + I ++ Q+++++ Sbjct: 178 GTKDAIMMVEAGANE---VSEETMLEAILFAHEEIKKIVAFQEEIVA 221 >gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102] Length = 291 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 88/226 (38%), Gaps = 33/226 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGW- 58 +R+ GR+ N++R + R A+GS + G T ++ T E+ ++ + G Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQVQAQRRGAQ 72 Query: 59 -------------ITAEYGMLPRSTGNRVKREAVSGRQ-----------GGRSQEIQRMI 94 + A + + R R +E GR+ G R+QEI+ I Sbjct: 73 ASGRDAASIIVNVVIAGFSSVDRKKRGRNDKEG--GREIEHRALTWRGYGRRTQEIEITI 130 Query: 95 GRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154 +AL S V I + V+ DG A I A +A+ D M D ++ Sbjct: 131 AKALSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTD-----YIA 185 Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200 G ++ + G P++DL+ E+ + + DS +V Sbjct: 186 ACTAGSTSSYAAGDDSADPLLDLNNQEEQELPFLTVASLGDSDRVV 231 >gi|20090627|ref|NP_616702.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina acetivorans C2A] gi|29336812|sp|Q8TGX5|ECX2_METAC RecName: Full=Probable exosome complex exonuclease 2 gi|19915669|gb|AAM05182.1| tRNA nucleotidyltransferase [Methanosarcina acetivorans C2A] Length = 266 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 15/237 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R++ L V AEGS V G+T +L L+ P + + G I Sbjct: 25 RQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113 + P ++ E G + E+ R++ R +R +D+ L G + Sbjct: 84 NLELNPIAS-----PEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ DG A+ A AL + E + +K I+ + Sbjct: 139 IDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGEDVPLAMKEMPVGITIAKIGSKL 198 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +VD E++ + V + G + +Q + ++ F ++LA ++ A+L Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG-ISPLTEAELFEAIDLALEKAAEL 254 >gi|254669727|emb|CBA03893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha153] Length = 706 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|254804638|ref|YP_003082859.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha14] gi|254668180|emb|CBA04880.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha14] Length = 706 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi] Length = 246 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 32/232 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMW-----IR 52 +RL GR+ +++R + R+ + A+GS ++ G+T +L A + P Sbjct: 9 LRLDGRKSDELRRLRC--RLGAFSWSADGSAYLEMGNTKVLA-AVYGPREPRGGSSGDNS 65 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 N + + ++ ST R +R+ R RS E+ + + + + QI Sbjct: 66 NKEEAILNVQFSSAAFSTAERKQRQ----RGDKRSLEMAAHLKQTFAACIQTELYPRSQI 121 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 I +V+Q DGG A++ A +AL L+ +V A S ++ Sbjct: 122 DIFVEVLQTDGGHYCASVNAATLAL-------------IHAGIPLRDYVCACSASLIKET 168 Query: 173 PIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 P++D+ E + + + SG IV ++ S F DH +++ A Sbjct: 169 PLLDISMLESNLGGPELILAALPKSGEIVLLEMSQR---FHMDHLEKVIDEA 217 >gi|329120747|ref|ZP_08249409.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327460544|gb|EGF06880.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 701 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I++ V GS L G+T L TL + I + G T Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVTTLGTQRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGECGRMGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|325142036|gb|EGC64468.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis 961-5945] gi|325197978|gb|ADY93434.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis G2136] Length = 706 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|325136018|gb|EGC58628.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M0579] gi|325202445|gb|ADY97899.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M01-240149] gi|325207803|gb|ADZ03255.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis NZ-05/33] Length = 706 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|320528964|ref|ZP_08030056.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis F0399] gi|320138594|gb|EFW30484.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis F0399] Length = 690 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 10/123 (8%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74 +++K A G+ LV++GDT +L TAT E V + + G +P G + Sbjct: 19 KMAKQANGAALVRYGDTVVLVTATASSAPREGVDFFPLTVDYEEKMYAAGKIP---GGFI 75 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE GR + R+I R +R + QI+ + D AA+ GA Sbjct: 76 KRE---GRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLSVDQDNPPEIAAMLGAS 132 Query: 135 VAL 137 AL Sbjct: 133 CAL 135 >gi|116626786|ref|YP_828942.1| polynucleotide phosphorylase/polyadenylase [Candidatus Solibacter usitatus Ellin6076] gi|122251352|sp|Q01NW3|PNP_SOLUE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116229948|gb|ABJ88657.1| 3' exoribonuclease [Candidatus Solibacter usitatus Ellin6076] Length = 701 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 30/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR+ +Q+R+I++ V GS L G+T L T TL E+++ + Sbjct: 311 RPDGREFDQIRQITIETGVLPRVHGSTLFTRGETQALVTVTLGTKDDEQRIELLEPGEAS 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIII 114 Y P S G V +G +EI + RAL +++ + + Sbjct: 371 KRFMLHYNFPPFSVGE------VGFMRGAGRREIGHGALAERALTALIPGEDKFPYTMRV 424 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---G 171 D ++++G + AAI G +AL Q + HV ++ G++ Sbjct: 425 VSDTLESNGSSSMAAICGGSLAL-------------MQAGVPMTAHVGGVAMGLVMEGKD 471 Query: 172 YPIV-DLDYGEDSTIDVDANFVMTDSG 197 Y I+ D+ ED D+D T G Sbjct: 472 YAILTDIAGAEDHYGDMDFKVAGTRDG 498 >gi|268681650|ref|ZP_06148512.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID332] gi|268621934|gb|EEZ54334.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID332] Length = 707 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472 >gi|255019829|ref|ZP_05291905.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254970758|gb|EET28244.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 692 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + + GS L G+T L ATL +E++ ++ Sbjct: 313 RIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTKGDEQIVDALQGESRD 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RA+ +V+ + + I + Sbjct: 373 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAVAAVLPSESEFPYSLRIVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174 +++++G + A + GA +AL D LK VA ++ G++ Y + Sbjct: 429 ILESNGSSSMATVCGASLALMDA-------------GVPLKAPVAGVAMGLIKDGERYAV 475 Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T++G Sbjct: 476 LTDILGDEDHLGDMDFKVAGTENG 499 >gi|288560608|ref|YP_003424094.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter ruminantium M1] gi|288543318|gb|ADC47202.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter ruminantium M1] Length = 263 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGWI 59 R GR ++ R+I + V AEGS VK GDT ++ T+ E + G + Sbjct: 21 RADGRAFDERRDIFIEPNVIDKAEGSARVKLGDTQVIVGVKPTIGEP---FADTPNLGVL 77 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------ 111 +LP + G S E+ R++ R +R +VDL L + Sbjct: 78 MTNCELLPMAAPG-----FEPGPPSPESIELARVVDRGIRESELVDLEKLCIEEGKKVWM 132 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ------VLKGHVAAI 164 + ID VI DG A AL + L E ++ LS+ ++ +A Sbjct: 133 LFIDLHVIDYDGNLFDCANLAVMSALLNTKLPVAEYIDDEVVLSEDETMDLPVRDKLALS 192 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLA 223 + + I+D E+ +D +TD G HI +Q E ++D ++LA Sbjct: 193 TFVKIGNGLILDPSLEEEEILDARITIGVTDEGNHICSMQKGGEEP-LTRDDILDAVHLA 251 Query: 224 KDRIADLI 231 + DL+ Sbjct: 252 FETKDDLL 259 >gi|240123023|ref|ZP_04735979.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID332] Length = 706 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|240016088|ref|ZP_04722628.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae FA6140] Length = 706 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|148241642|ref|YP_001226799.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. RCC307] gi|187611327|sp|A5GRD7|PNP_SYNR3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|147849952|emb|CAK27446.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp. RCC307] Length = 719 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 44/242 (18%) Query: 12 REISLT-RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG----WITAEY--- 63 REI LT RR + A GS L++ GDT +L TAT N + G +T +Y Sbjct: 13 REIRLTTRRYAPQAGGSVLIECGDTAVLVTATRA--------NGREGIDFLPLTCDYEER 64 Query: 64 ----GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G+ ++RE+ R R+ R+I R +R + QI+ + Sbjct: 65 LYAAGRIP---GSFMRRES---RPPERATLACRLIDRPIRPLFPSWMRDDLQIVATVMSV 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLD 178 A+TGA +A L+++ G +AA+ G+L I++ Sbjct: 119 DERVPPDVLAVTGASLAT--------------LLAKIPFYGPMAAVRVGLLGDDFILNPS 164 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y E ++D T G +V V+ A++ ++ ++ + + +LI+ QK+ I Sbjct: 165 YREIERSELDLVVAGTAEG-VVMVEAGAQQ--LPEEDMIEAIDFGYEAVLELIRHQKETI 221 Query: 239 SN 240 + Sbjct: 222 AE 223 >gi|59800780|ref|YP_207492.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae FA 1090] gi|240120719|ref|ZP_04733681.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID24-1] gi|268594384|ref|ZP_06128551.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae 35/02] gi|268596381|ref|ZP_06130548.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae FA19] gi|268600863|ref|ZP_06135030.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID18] gi|268686120|ref|ZP_06152982.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-93-1035] gi|291044327|ref|ZP_06570036.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae DGI2] gi|293399517|ref|ZP_06643670.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae F62] gi|75356328|sp|Q5F9Q7|PNP_NEIG1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|59717675|gb|AAW89080.1| putative polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae FA 1090] gi|268547773|gb|EEZ43191.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae 35/02] gi|268550169|gb|EEZ45188.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae FA19] gi|268584994|gb|EEZ49670.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID18] gi|268626404|gb|EEZ58804.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-93-1035] gi|291011221|gb|EFE03217.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae DGI2] gi|291610086|gb|EFF39208.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae F62] Length = 707 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472 >gi|325129928|gb|EGC52729.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis OX99.30304] Length = 706 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|218767879|ref|YP_002342391.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis Z2491] gi|187610303|sp|A1IR09|PNP_NEIMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|121051887|emb|CAM08193.1| putative polyribonucleotide nucleotidyltransferase [Neisseria meningitidis Z2491] gi|319410126|emb|CBY90462.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase; PNPase; CAP87K) [Neisseria meningitidis WUE 2594] Length = 706 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|115372776|ref|ZP_01460082.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] gi|310823414|ref|YP_003955772.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] gi|115370257|gb|EAU69186.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] gi|309396486|gb|ADO73945.1| Polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] Length = 807 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 37/228 (16%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWITAEY-------GMLPRST 70 R++K A+G+ +V++GDT LL TA + EK ++ +T EY G +P Sbjct: 104 RLAKQADGAVVVRYGDTMLLVTAVSAREK-----KDVDFLPLTVEYQEKLYSAGRIP--- 155 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G+ KRE GR + R++ R+ R + QII + + I Sbjct: 156 GSYFKRE---GRLTEKETLASRLVDRSCRPLFPDGYAYETQIIASVVSAEPENEGDIHGI 212 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TGA AL + D G +A I G + G + + + D+D Sbjct: 213 TGASAAL-----WVSDIP--------FNGPIAGIRVGRVDGKFVANPTLKQREQSDID-- 257 Query: 191 FVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 VM S IV V+G AE S+ A L K + + +Q ++ Sbjct: 258 LVMAVSREAIVMVEGGAEE--VSEADMVAALEFGKQAVQPALDIQDEL 303 >gi|240112443|ref|ZP_04726933.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae MS11] gi|240117467|ref|ZP_04731529.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID1] gi|240125275|ref|ZP_04738161.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-92-679] Length = 706 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|254493246|ref|ZP_05106417.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae 1291] gi|268598511|ref|ZP_06132678.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae MS11] gi|268603169|ref|ZP_06137336.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID1] gi|268683877|ref|ZP_06150739.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-92-679] gi|226512286|gb|EEH61631.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae 1291] gi|268582642|gb|EEZ47318.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae MS11] gi|268587300|gb|EEZ51976.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID1] gi|268624161|gb|EEZ56561.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-92-679] Length = 707 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472 >gi|194098066|ref|YP_002001114.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae NCCP11945] gi|239998524|ref|ZP_04718448.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae 35/02] gi|240013649|ref|ZP_04720562.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae DGI18] gi|240080230|ref|ZP_04724773.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae FA19] gi|240115183|ref|ZP_04729245.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID18] gi|240127729|ref|ZP_04740390.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-93-1035] gi|260440999|ref|ZP_05794815.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae DGI2] gi|226702668|sp|B4RK29|PNP_NEIG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193933356|gb|ACF29180.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae NCCP11945] gi|317163799|gb|ADV07340.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae TCDC-NG08107] Length = 706 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|73666963|ref|YP_302979.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia canis str. Jake] gi|123615003|sp|Q3YSC4|PNP_EHRCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|72394104|gb|AAZ68381.1| 3 exoribonuclease:RNA binding S1:KH [Ehrlichia canis str. Jake] Length = 796 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +++R I + V A GS L G+T L L +E++ + + Sbjct: 319 RIDGRAFDEIRNIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P + G A R+ G ++ RA+R V+ + I + + Sbjct: 379 NFLLHYNFPPYAVGESAALRAPGRREIGHG----KLAWRAIRYVLPEKSDFPYTIRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + ++DG + A + GA +AL D Sbjct: 435 ITESDGSSSMATVCGASLALMDT 457 >gi|317495525|ref|ZP_07953893.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424] gi|316914339|gb|EFV35817.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424] Length = 695 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 35/227 (15%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGNR 73 +++ A + +VK+GDT +LTTA ++ P+ + + + G +P G Sbjct: 24 MARQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAV---GKIP---GGF 77 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++RE GR G + R+I R +R + + Q+I ++ D AA+ G+ Sbjct: 78 LRRE---GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMAAMLGS 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVDANF 191 +AL SN KG +A ++ G + G ++ +++ E S ID+ Sbjct: 135 SLALS--------VSN-----IPFKGPIAGVTVGYVDGEYVINPNVEQFEKSKIDLK--- 178 Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 V I V+ AE S++ + + I LI Q+ ++ Sbjct: 179 VAGTKDAINMVEAGAEEV--SEEVMLNAIMFGHEEIKRLIAFQQQIV 223 >gi|312865445|ref|ZP_07725672.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei F0415] gi|311098963|gb|EFQ57180.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei F0415] Length = 825 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 33/229 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGN 72 +V+K A G+ +V +GD+ +L AT+ +K+ P+ + + + ++ G Sbjct: 21 QVAKQANGAAVVHYGDSTVLCAATMSKKMARTDFFPLQVNYEEKMYAAGKF------PGG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR + R+I R +R + Q+I D AA+ Sbjct: 75 FMKRE---GRPSADATLTARLIDRPIRPLFAQGFRNEVQVINTVLSYDPDASAPMAAMFA 131 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + +AL C+ + +G +A + L G I++ + ++D Sbjct: 132 SSLAL--CISDIP-----------FEGPIAGVQVAYLDGEFIINPTAQQKEASNLDLTVA 178 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T D+ ++VE G+ E S+D L I +LI Q+++++ Sbjct: 179 GTKDAINMVE-SGAQE---LSEDIMLEALLKGHQAIQELIAFQEEIVAT 223 >gi|169333888|ref|ZP_02861081.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM 17244] gi|169259453|gb|EDS73419.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM 17244] Length = 711 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 26/223 (11%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++ A GS + +GDT +L A + +E + + + + G +P G +K Sbjct: 21 LAQMANGSVFISYGDTQILVNACMSKEAKEGIDFFPLSVFYEEKMYSVGKIP---GGFLK 77 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR ++ R+I R LR + D QI+ + D +I GA + Sbjct: 78 RE---GRASEKATLTCRLIDRPLRPLFDKGFRNDVQIVATVMGVDQDNSPEITSILGASL 134 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL + D G V A++ G++ G + + + D+ T Sbjct: 135 AL-----GISDIP--------FDGPVGAVNVGLIDGELVYNPTSDQRDISDLSLTVAGTS 181 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ++ G+ E S++ + A + I ++IK Q+++I Sbjct: 182 EAVLMVEAGANE---VSEEIMIDAIMGAHEHIKEIIKFQEEII 221 >gi|323489596|ref|ZP_08094823.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis MPA1U2] gi|323396727|gb|EGA89546.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis MPA1U2] Length = 705 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 43/231 (18%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71 +++K A G+ L+++GDT +L+TAT K P + +T Y G +P G Sbjct: 23 QLAKQANGAALIRYGDTAVLSTATA-SKTP---KPLDFFPLTVNYEERLYAVGKIP---G 75 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE GR ++ R+I R +R + Q+I + D + AA+ Sbjct: 76 GFIKRE---GRPSEKATLTSRLIDRPIRPLFPDGFRNEVQVISMVMSVDQDCPSEMAAMF 132 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL--DYGEDSTIDVDA 189 G+ +AL + D G +A + G++ G I++ D E S+I Sbjct: 133 GSSLAL-----MISDIP--------FGGPIAGVIVGLIDGQYIINPTNDQLEQSSI---- 175 Query: 190 NFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 N ++ D+ ++VE G+ E S++ + + I LI Q+ + Sbjct: 176 NLIVAGTKDAINMVEA-GAKE---VSEEVILEAIMFGHEEIKKLIAFQEQI 222 >gi|260436528|ref|ZP_05790498.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 8109] gi|260414402|gb|EEX07698.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 8109] Length = 721 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 32/236 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS LV+ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGRDGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE+ R R+ R+I R +R + Q++ C + Sbjct: 70 ---RIPGSYMRRES---RPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+TGA +A G +AA+ G+L +++ Y E Sbjct: 124 ADVLAVTGASIA-------------TLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + + ++ + I +LIK Q+ ++ + Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223 >gi|298368480|ref|ZP_06979798.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon 014 str. F0314] gi|298282483|gb|EFI23970.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon 014 str. F0314] Length = 705 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|218437998|ref|YP_002376327.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC 7424] gi|226702644|sp|B7KIQ3|PNP_CYAP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218170726|gb|ACK69459.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7424] Length = 718 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 33/228 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 ++ A GS L++ GDT +L TAT + +P+ + + + R G Sbjct: 22 LAPQAGGSVLIQSGDTAVLVTATKAASREGVDFLPLTVDYEERLYAAG------RIPGGF 75 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++RE GR ++ I R+I R LR + Q+I + + A+TGA Sbjct: 76 LRRE---GRPPEKAILISRLIDRPLRPLFPHWLRDDIQVIATTLSMDEEVPPDVLAVTGA 132 Query: 134 WVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 +A+ L+++ G +AA+ G++ I++ Y E +T D+D Sbjct: 133 SLAVI--------------LAEIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDLDLVVA 178 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + G +V V+ A + + ++ + + DLI Q+DV+ Sbjct: 179 GSPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIAAQQDVMET 223 >gi|261364736|ref|ZP_05977619.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC 25996] gi|288567035|gb|EFC88595.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC 25996] Length = 706 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|324992451|gb|EGC24372.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK405] gi|327462786|gb|EGF09108.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1057] Length = 733 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSMDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVAL 137 G+ +AL Sbjct: 130 FGSSLAL 136 >gi|318040477|ref|ZP_07972433.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CB0101] Length = 715 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 34/235 (14%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS +V+ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE+ R R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGSFMRRES---RPPERATLIARLIDRPMRPLFPSWLRDDLQIVATCMSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A L+++ G +AA+ G+L +++ Y E Sbjct: 124 PDVLAVTGASLATL--------------LAKIPFHGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+D T G I+ G+ + + ++ + + +LIK Q+ ++ Sbjct: 170 RSDLDLVVAGTPEGVIMVEAGANQ---LPEQDVIEAIDFGYEAVCELIKAQQALL 221 >gi|282897292|ref|ZP_06305294.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9] gi|281197944|gb|EFA72838.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9] Length = 259 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 51/237 (21%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73 ++ A GS L++ GDT +L TAT E +P+ + + + R G Sbjct: 22 LAPQAGGSVLIESGDTAVLVTATRSEAREGIDFLPLTVDYEERLYAAG------RIPGGI 75 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVV------DLSALG---SRQIIIDCDVIQADGG 124 ++RE GR R+ R+I R LR + DL + S ++ DV+ Sbjct: 76 MRRE---GRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIALTLSMDELVPPDVL----- 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A ++Q+ G +AA+ G++ I++ Y E Sbjct: 128 ----AVTGASIATL--------------IAQIPFYGPMAAVRVGLVGDDFIINPTYAEIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G I+ G+ + + ++ + + DLI+ Q+D+I+ Sbjct: 170 AGDLDLVVAGSPDGVIMVEAGANQ---LPERDIIEAIDFGYEAVRDLIQAQRDLIAE 223 >gi|254671820|emb|CBA03945.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha275] Length = 579 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|194335788|ref|YP_002017582.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon phaeoclathratiforme BU-1] gi|226702672|sp|B4SDX4|PNP_PELPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|194308265|gb|ACF42965.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon phaeoclathratiforme BU-1] Length = 728 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 8/142 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR +Q+R IS+ + A GS L G+T L T TL K + ++ Sbjct: 332 RLDGRALDQVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTSSADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + ++ R+ G + R+++ V I I D Sbjct: 392 KFYLHYNFPPFCVGETGRLGSIGRREIGHGN----LAERSIKMVAPTEEEFPYTIRIVSD 447 Query: 118 VIQADGGTRTAAITGAWVALHD 139 +++++G + A++ G +AL D Sbjct: 448 ILESNGSSSMASVCGGTLALMD 469 >gi|78212120|ref|YP_380899.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CC9605] gi|123578701|sp|Q3AM38|PNP_SYNSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78196579|gb|ABB34344.1| RNA binding S1 [Synechococcus sp. CC9605] Length = 721 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 32/236 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS LV+ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE+ R R+ R+I R +R + Q++ C + Sbjct: 70 ---RIPGSYMRRES---RPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+TGA +A G +AA+ G+L +++ Y E Sbjct: 124 ADVLAVTGASIA-------------TLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + + ++ + I +LIK Q+ ++ + Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223 >gi|294788877|ref|ZP_06754118.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri ATCC 29453] gi|294483359|gb|EFG31045.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri ATCC 29453] Length = 703 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ + + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFNYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA ++ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGVAMGLIL 471 >gi|148361082|ref|YP_001252289.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila str. Corby] gi|296108412|ref|YP_003620113.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|187610281|sp|A5IHU3|PNP_LEGPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148282855|gb|ABQ56943.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila str. Corby] gi|295650314|gb|ADG26161.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila 2300/99 Alcoy] Length = 729 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ + + GSCL G+T + ATL + ++ I Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ RAL +V+ + + I + Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174 + +++G + A + G +AL D LK VA ++ G++ Y + Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLIKEGDRYAV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T+ G Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKG 500 >gi|42523058|ref|NP_968438.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio bacteriovorus HD100] gi|81617621|sp|Q6MMS2|PNP_BDEBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|39575263|emb|CAE79431.1| polyribonucleotide nucleotidyltransferase [Bdellovibrio bacteriovorus HD100] Length = 697 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T R++K A+G+ LV G+ +L TAT +K P+ + + + T G +P Sbjct: 18 TGRLAKQADGAALVSSGNNMVLVTATSSKKASELDFFPLTVEYIEKFYAT---GKIP--- 71 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TRTA 128 G KREA + + I R+I R +R V QI+ V+ ADG Sbjct: 72 GGYFKREA---KPTNDAVLIARLIDRPIRPVFPEGYRHETQIV--ATVLSADGAFPLEIL 126 Query: 129 AITGAWVALH 138 A GA ALH Sbjct: 127 ASLGASAALH 136 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 23/174 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R+ GR +R I+ + A GS L G+T +L T TL E+ V + K Sbjct: 317 VRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLGTADDEQMVDSLLGLQK 376 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G + S R+ G + RA+++V+ I I Sbjct: 377 RKFML-HYNFPPYSVGEVGRMSGTSRREIGHGN----LAERAIKAVLPDFEKFPYTIRIV 431 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +V++++G + + +AL D LKG+VA ++ G++ Sbjct: 432 SEVLESNGSSSMGTVCSGIMALLDA-------------GVPLKGNVAGVAMGLI 472 >gi|332886043|gb|EGK06287.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas mossii DSM 22836] Length = 723 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 RL GR ++R I A GS + G+T LTT T L+EK+ + N Sbjct: 319 RLDGRTTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKLDEKIIDDVLNNGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG+ + V R+ G + RAL+ ++ +++ D Sbjct: 379 RFLLHYNFPPFSTGDARPQRGVGRREIGHGN----LAHRALKPMIPSDYPYVIRVV--SD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455 >gi|78185360|ref|YP_377795.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CC9902] gi|123580765|sp|Q3AV44|PNP_SYNS9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78169654|gb|ABB26751.1| RNA binding S1 [Synechococcus sp. CC9902] Length = 721 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 32/236 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 REI LT R + A GS LV+ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSKGRDGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++REA R R+ R+I R +R + Q++ C + Sbjct: 70 ---RIPGSYMRREA---RPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 + A+TGA +A G +AA+ G+L +++ Y E Sbjct: 124 SDVLAVTGASIA-------------TLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + + ++ + I +LIK Q+ ++ + Sbjct: 171 GDLDLVVAGTADG-VVMVEAGANQ--LPEGDVIEAIDFGYEAIQELIKAQETLLKD 223 >gi|293510045|ref|ZP_06668753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M809] gi|291466989|gb|EFF09507.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M809] Length = 580 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT ++ R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATASKEP----RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D + AA Sbjct: 75 -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G I++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+ ++ + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225 >gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|187470935|sp|A7GRD7|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH 391-98] Length = 710 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 23/145 (15%) Query: 7 QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIR 52 QE Q+ I L T +++K A G+ LV++GDT +L+TAT ++ P+ + Sbjct: 3 QEKQVFSIDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEAKDVDFFPLTVN 62 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 + + G +P G +KRE GR ++ R+I R +R + Q+ Sbjct: 63 YEERLYAV---GKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQV 113 Query: 113 IIDCDVIQADGGTRTAAITGAWVAL 137 + + D + AA+ G+ +AL Sbjct: 114 VSIVMSVDQDCSSEMAAMLGSSLAL 138 >gi|52842967|ref|YP_096766.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81376653|sp|Q5ZRV8|PNP_LEGPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52630078|gb|AAU28819.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 729 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ + + GSCL G+T + ATL + ++ I Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ RAL +V+ + + I + Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174 + +++G + A + G +AL D LK VA ++ G++ Y + Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLIKEGDRYAV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T+ G Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKG 500 >gi|316983743|gb|EFV62724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis H44/76] gi|325200556|gb|ADY96011.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis H44/76] Length = 706 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|254431498|ref|ZP_05045201.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001] gi|197625951|gb|EDY38510.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001] Length = 708 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 100/237 (42%), Gaps = 34/237 (14%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS +V+ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE+ R R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGSFMRRES---RPPERATLIARLIDRPMRPLFPGWMRDDLQIVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A L+++ G +AA+ G+L +++ Y E Sbjct: 124 PDVLAVTGASMATL--------------LAKIPFHGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G I+ G+ + + ++ + +++LIK Q+ ++ + Sbjct: 170 RSDLDLVVAGTPQGVIMVEAGANQ---LPEQDVIEGIDFGYEAVSELIKAQQALLKD 223 >gi|302381329|ref|YP_003817152.1| polyribonucleotide nucleotidyltransferase [Brevundimonas subvibrioides ATCC 15264] gi|302191957|gb|ADK99528.1| polyribonucleotide nucleotidyltransferase [Brevundimonas subvibrioides ATCC 15264] Length = 764 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 20/149 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +++R+I + GS L G+T + ATL +E+ + T Sbjct: 333 RVDGRALDKVRDIVSEVGIFPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLAGTYKE 392 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P S G +GR GG +R IG RA+R ++ S Sbjct: 393 KFLLHYNFPPYSVGE-------TGRMGGAG---RREIGHGKLAWRAIRPMLPTSEEFPYT 442 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC 140 I I ++ +++G + A++ GA +AL D Sbjct: 443 IRIVSEITESNGSSSMASVCGASLALMDA 471 >gi|325982016|ref|YP_004294418.1| polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212] gi|325531535|gb|ADZ26256.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212] Length = 709 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I++ V GS L G+T L ATL E+K+ + Sbjct: 315 RIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAIATLGTARDEQKIDSLQGDYNE 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +I Y M P +TG + R+ G R+ RAL +V+ + + Sbjct: 375 RFIL-HYNMPPYATGEIGRVGTPKRREIGHG----RLAKRALVAVLPPPEEFGYSLRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ +AL D LK HVA I+ G++ Sbjct: 430 EITESNGSSSMASVCSGCLALMDA-------------GVPLKAHVAGIAMGLI 469 >gi|296840915|ref|ZP_06863772.2| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea ATCC 43768] gi|296839560|gb|EFH23498.1| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea ATCC 43768] Length = 707 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472 >gi|238021429|ref|ZP_04601855.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147] gi|237868409|gb|EEP69415.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147] Length = 716 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ + + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPDPEDFNYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|228469449|ref|ZP_04054457.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis 60-3] gi|228309024|gb|EEK17667.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis 60-3] Length = 736 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 10/148 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ +++R I + GS + G+T L+T TL +EK+ + N Sbjct: 318 RLDGRRTDEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDVLNYGKE 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG +S R+ G R + R + D + I + D Sbjct: 378 RFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIPE--DYPYV----IRVMSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME 145 +++++G + A + +AL D M+ Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQMK 459 >gi|255066227|ref|ZP_05318082.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC 29256] gi|255049437|gb|EET44901.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC 29256] Length = 706 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum] Length = 213 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 15/152 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55 +R GR+ ++R I V +GS ++ G+T ++ P IR + Sbjct: 9 LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAI----YGPHEIRTNRAKAPN 64 Query: 56 -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 I +Y M S R +R + +S E+ + +A+ + + QI I Sbjct: 65 DSAVINCQYSMATFSRSERKRRP-----RDNKSAELTLHLKQAMATAIKTDLYPKSQIDI 119 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMED 146 V+Q+DGG + + A +AL D ME+ Sbjct: 120 FVQVLQSDGGNYSVCVNAATLALIDAGIAMEE 151 >gi|313668762|ref|YP_004049046.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ST-640] gi|313006224|emb|CBN87686.1| putative polyribonucleotide nucleotidyltransferase [Neisseria lactamica 020-06] Length = 706 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|269213998|ref|ZP_05983355.2| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC 14685] gi|269144760|gb|EEZ71178.1| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC 14685] Length = 707 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472 >gi|161869702|ref|YP_001598869.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis 053442] gi|189037311|sp|A9M3J0|PNP_NEIM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|161595255|gb|ABX72915.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis 053442] Length = 706 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|256370772|ref|YP_003108597.1| putative polyribonucleotide nucleotidyltransferase [Candidatus Sulcia muelleri SMDSEM] gi|256009564|gb|ACU52924.1| putative polyribonucleotide nucleotidyltransferase [Candidatus Sulcia muelleri SMDSEM] Length = 691 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 25/176 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 RL GR + +R+I GS + G+T L+T TL K+ I + Sbjct: 319 RLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVILQDQQ 378 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 + Y P STG + +S R+ G Q RAL++++ + +++ Sbjct: 379 KF-YLHYNFPPFSTGEIKLLKGISRREIGHGNLAQ----RALKNIIPFKTPYTIRVV--S 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 D+++++G + A + + +AL D +K V+ IS G++ + Sbjct: 432 DILESNGSSSMATVCASTLALMDA-------------GIPIKRPVSGISMGLIINF 474 >gi|113954008|ref|YP_731290.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CC9311] gi|123327683|sp|Q0I8D2|PNP_SYNS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|113881359|gb|ABI46317.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. CC9311] Length = 721 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 34/235 (14%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 REI LT R + A GS +++ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSKGRDGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE+ R R+ I R+I R +R + QI+ C + Sbjct: 70 ---RIPGSFMRRES---RPPERATLICRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A L+++ G +AA+ G+L +++ Y E Sbjct: 124 ADVLAVTGASMATL--------------LAKIPFYGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+D T G +V V+ A + + ++ + +++LIK Q+ ++ Sbjct: 170 RGDLDLVVAGTPQG-VVMVEAGANQ--LPEGDVIEAIDFGYEAVSELIKAQQSIL 221 >gi|269214445|ref|ZP_06158584.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC 23970] gi|269209893|gb|EEZ76348.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC 23970] Length = 707 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472 >gi|190571231|ref|YP_001975589.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|226704831|sp|B3CM21|PNP_WOLPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|190357503|emb|CAQ54939.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 758 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 14/132 (10%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 R +SL T ++++ A+GS +V +GDT +L T EE V N + +I Y M Sbjct: 14 RTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKKEESVDFLPLNVQ--FIAKSYAM-G 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 + G KRE G+ R I R+I R++R + +I + C+++ D Sbjct: 71 KIPGGFFKRE---GKPSDRETLISRVIDRSIRPL--FPEGFHDEISVVCNLLTYDTVNSP 125 Query: 126 RTAAITGAWVAL 137 A+ G AL Sbjct: 126 EVPALIGTVAAL 137 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 25/175 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ R+ +++R+I + + GS L G T L L +E++ I + Sbjct: 310 VRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRR 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P + G EA + R GR +EI ++ +A+ V+ + I + Sbjct: 370 EHFMLHYNFPPFAVG-----EASAIRAPGR-REIGHGKLAWKAIHPVLPDKSEFPYTIRV 423 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +++++DG + A + G +AL D +K VA I+ G++ Sbjct: 424 VSEIMESDGSSSMATVCGTSIALMDT-------------GVPIKAPVAGIAMGLI 465 >gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor] gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor] Length = 239 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 48/257 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R S T A GS GDT +L + K G Sbjct: 6 RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAA----------VYGPKPG---T 52 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 G P V + +G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 53 RKGENPEKASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 112 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGML-CGYPIVDLDY 179 DG AI + AL + + H+A AI CG++ G I+D Sbjct: 113 DGSLLPCAINASCAAL--------------AFAGIPMKHLAVAICCGVMDNGAVILDTST 158 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAER--------------ATFSQDHFFAMLN---L 222 E+ A+ V +S V+ + ++ T S+D++F + Sbjct: 159 AEEQQAKSFAHLVFPNSRKSVDSKDPMQKDEESERGLISCITHGTMSEDNYFNCIERGIA 218 Query: 223 AKDRIADLIK--LQKDV 237 A +I+D ++ LQK+ Sbjct: 219 ASSKISDFMRKTLQKEA 235 >gi|309378199|emb|CBX23171.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 706 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|325133728|gb|EGC56384.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M13399] Length = 706 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895] gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895] Length = 246 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 20/188 (10%) Query: 1 MRLSGRQENQMR--EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHG 57 +RL GR+ N++R E S+ + A+GS ++ G+ L+T T + + + N Sbjct: 12 LRLDGRRWNELRRFECSINTHPTA-ADGSSYLEQGNNKLITLVTGPHEPALRSQVNPSKA 70 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +T M + R K + R R E+Q + R V L I + Sbjct: 71 TLTVTVNMTKFAAAERSKTGHKNER---RILEMQTALVRTFEKNVMLQLYPRTAIDVQVH 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+Q DGG + I G +AL D M + +++ IS G+ P++DL Sbjct: 128 VLQNDGGVLGSMINGITLALIDAGIAMYE-------------YISGISVGLYDTTPLLDL 174 Query: 178 DYGEDSTI 185 + E+ + Sbjct: 175 NRLEEQAM 182 >gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia floridanus] gi|81666682|sp|Q7VQM0|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome [Candidatus Blochmannia floridanus] Length = 697 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 28/154 (18%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + +REI ++ + GS L GDT L TATL + R+ ++ Sbjct: 316 VRFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVTATLGTE-----RDAQN---- 366 Query: 61 AEYGMLPRSTGNRVKREAV--------SGRQG----GRSQEI--QRMIGRALRSVVDLSA 106 L TG+RV R + +G G R +EI R+ R + +V+ S Sbjct: 367 -----LDELTGDRVDRFLLHYNFPPYCTGEIGIVGAPRRREIGHGRLAKRGMLAVMPNSN 421 Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140 + + +V +++G + A+I GA +AL D Sbjct: 422 EFPYTVRVVSEVTESNGSSSMASICGASLALMDA 455 >gi|323697461|ref|ZP_08109373.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. ND132] gi|323457393|gb|EGB13258.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio desulfuricans ND132] Length = 753 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 58/250 (23%), Positives = 101/250 (40%), Gaps = 30/250 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R+ GR +R +S+ V + GS L + G+T L TATL E++ + + Sbjct: 321 LRIDGRNTTTVRPLSIEVGVLQQTHGSALFRRGETCSLATATLGSTRDEQRYDSLLGDAT 380 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P G S R+ G + RAL V+ I + Sbjct: 381 KRFML-HYNFPPYCVGEARMLRGPSRREVGHGA----LAERALTPVIPDPENFPFTIRVV 435 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++++++G + A++ GA ++L D + D VA I+ G LC Sbjct: 436 SEIMESNGSSSMASVCGATLSLMDAGVPISD-------------PVAGIAMG-LCKEGDQ 481 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + + D+ ED+ D+D T G I +Q + A QD L AK+ + Sbjct: 482 YFVLTDILGDEDALGDMDFKVAGTRDG-ITAIQMDIKIAGIPQDVLKKALQQAKEARTHI 540 Query: 231 IKLQKDVISN 240 + +VI+ Sbjct: 541 LDHMAEVIAK 550 >gi|225075235|ref|ZP_03718434.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens NRL30031/H210] gi|224953410|gb|EEG34619.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens NRL30031/H210] Length = 707 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472 >gi|326508906|dbj|BAJ86846.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 306 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 62/270 (22%), Positives = 101/270 (37%), Gaps = 43/270 (15%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R+ + R ++ A GS LV+ GDT +L + LE P G + Sbjct: 39 VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP-PAETPDQGSVA 97 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL------------G 108 E+ M P + + GR E +I +AL V+ S + Sbjct: 98 VEFHMPPICS---------PLVRPGRPAEAAPVISKALEDVLMSSGMLNLKELCLISGKA 148 Query: 109 SRQIIIDCDVIQADGGTRTAA---ITGAWVALHDCLQHMED-----------CSNKFQL- 153 S +D + ADG AA + A+ L L + D K++L Sbjct: 149 SWVAYLDVYCLNADGSLFDAALISVVAAFTHLEIPLVSVGDDGRVFTVGGNEGKTKYELV 208 Query: 154 ----SQVLKGHVA-AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 ++ G + ++C + +VD E+S I+ V+ SG +V +Q Sbjct: 209 NREKRKLTLGDIPFPLTCALHKDSILVDPTAEEESIIETSVTVVLDSSGRLVSIQKPGGG 268 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T S A + LAK+R L ++ D I Sbjct: 269 VT-SMAAIKACIGLAKERGQKLKEILTDSI 297 >gi|88608486|ref|YP_505958.1| polynucleotide phosphorylase/polyadenylase [Neorickettsia sennetsu str. Miyayama] gi|123750038|sp|Q2GEY8|PNP_NEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88600655|gb|ABD46123.1| polyribonucleotide nucleotidyltransferase [Neorickettsia sennetsu str. Miyayama] Length = 757 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 26/211 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR ++R IS+ GS L G T L ATL +E+V I + Sbjct: 317 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 + Y LP + G A R+ G R+ +A+++V+ + + + Sbjct: 377 ESVLLHYNFLPYAVGEVGALRAPGRREIGHG----RLALKAVKAVLPGKEVFPYTLRLVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172 ++ ++DG + A + G+ +AL D + HVA I+ G++ Sbjct: 433 EITESDGSSSMATVCGSSLALMDT-------------GVPITKHVAGIAMGLITDGVRSA 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203 + D+ ED D+D T +G IV +Q Sbjct: 480 VLSDISGDEDMLGDMDFKVAGTRNG-IVALQ 509 >gi|192359049|ref|YP_001980963.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio japonicus Ueda107] gi|226702631|sp|B3PIA0|PNP_CELJU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|190685214|gb|ACE82892.1| polyribonucleotide nucleotidyltransferase [Cellvibrio japonicus Ueda107] Length = 710 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V A GS L G+T L ATL + ++ + K Sbjct: 315 RIDGRDNKTVRPITVDVGVLPKAHGSALFTRGETQALVVATLGNARDVQIIDQLEGEKKE 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R +++V+ + + + + Sbjct: 375 AFLLHYNFPPYSVGECGRMGSTGRREIGHG----RLAKRGVQAVLPKAESFPYTLRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ G+ +AL D LK VA I+ G++ G+ + Sbjct: 431 ITESNGSSSMASVCGSSLALMDA-------------GVPLKAPVAGIAMGLVKEDNGFAV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T SG Sbjct: 478 LTDILGDEDHLGDMDFKVAGTTSG 501 >gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JKD6159] Length = 698 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D + AA Sbjct: 75 -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G I++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+ ++ + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225 >gi|269123180|ref|YP_003305757.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus moniliformis DSM 12112] gi|268314506|gb|ACZ00880.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus moniliformis DSM 12112] Length = 732 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +++R ++ V K GS L G+T L TATL K I + G Sbjct: 340 RADGRKIDEIRPLNAQIDVLKMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNK 399 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y P S G A R+ G + RAL++V+ L + + + Sbjct: 400 KFFLHYNFPPFSVGEAGFMRAPGRRELGHGN----LAERALKAVMPLIDDFPYTVRVVSE 455 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173 + +++G + A+I G +AL +KG VA I+ G++ Sbjct: 456 ITESNGSSSQASICGGSLAL-------------MAAGVPIKGTVAGIAMGLIKEAENFTV 502 Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T G Sbjct: 503 LTDIQGLEDHLGDMDFKVAGTKKG 526 >gi|284799739|ref|ZP_05984737.2| polyribonucleotide nucleotidyltransferase [Neisseria subflava NJ9703] gi|284797006|gb|EFC52353.1| polyribonucleotide nucleotidyltransferase [Neisseria subflava NJ9703] Length = 707 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472 >gi|320107057|ref|YP_004182647.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis SP1PR4] gi|319925578|gb|ADV82653.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis SP1PR4] Length = 799 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 27/206 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R R +++R I + + GS L G+T L TATL +++ + K Sbjct: 314 IRPDRRAFDEIRTIDIEVGILPRTHGSALFTRGETQALVTATLGTGDDAQRMESYEGEQK 373 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G + S R+ G + RA+ +V+ A + + Sbjct: 374 KRFML-HYNFPPYSVGEVGRMTGTSRREVGHGA----LAYRAIEAVLPPEAESPYTLRVV 428 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GY 172 D+ +++G + A++ GA +AL Q LKG VA ++ G++ Y Sbjct: 429 SDITESNGSSSMASVCGASLAL-------------MQAGISLKGSVAGVAMGLVKEGDSY 475 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSG 197 I+ D+ ED D+D T +G Sbjct: 476 AILTDIAGAEDHYGDMDFKVAGTRNG 501 >gi|168698769|ref|ZP_02731046.1| polynucleotide phosphorylase/polyadenylase [Gemmata obscuriglobus UQM 2246] Length = 749 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 29/206 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR ++R + V G+ L + G+T L ATL E+KV +++ Sbjct: 317 RIDGRAPKELRALGAEVTVLPRTHGTALFQRGETQALVVATLGTVADEQKVD-GLQDEYS 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIID 115 +Y P S G E R GR + M+ R+L++V+ + I + Sbjct: 376 KKFFLDYNFPPYSVG-----ECKPIRAPGRREIGHGMLAERSLKAVIPPPSRFPYTIRLV 430 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173 ++++++G + A++ G +AL D +K VA IS G++ Sbjct: 431 SEILESNGSSSMASVCGGTLALMDA-------------GVPIKRPVAGISVGLVMEKDHF 477 Query: 174 --IVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T G Sbjct: 478 SLLTDIQGDEDHYGDMDFKVAGTQKG 503 >gi|126660748|ref|ZP_01731846.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110] gi|126617989|gb|EAZ88760.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110] Length = 715 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 31/227 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73 ++ A G+ L++ GDT +L TAT + +P+ + + + R G Sbjct: 22 LAPQAGGAVLIQSGDTAVLVTATTSKGREGIDFLPLTVDYEERLYAAG------RIPGGF 75 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++RE GR R+ I R+I R LR + QII + + A+TGA Sbjct: 76 LRRE---GRPPERAILISRLIDRPLRPLFPNWWRDEIQIIATTLSMDEEVPPDVLAVTGA 132 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 +A+ Q G +AA+ G++ I++ Y E + D+D Sbjct: 133 SIAV-------------IQAQIPFYGPMAAVRVGLIGDDFIINPTYREVESGDLDLVVAG 179 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + G +V V+ A + + ++ + + DLI Q D++ Sbjct: 180 SPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIGAQYDIMEE 223 >gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MW2] gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MSSA476] gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|81649409|sp|Q6G9T9|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81762564|sp|Q8NWY9|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MW2] gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MSSA476] gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21193] Length = 698 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D + AA Sbjct: 75 -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G I++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+ ++ + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225 >gi|324989722|gb|EGC21665.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK353] Length = 733 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 35/230 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 G+ +AL +S + G +A + G + G I++ + ++ Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLEL 175 Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T D+ ++VE G+ E S+D L + + +LI Q++++ Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDVMLEALLKGHEAVKELIAFQEEIV 221 >gi|30248196|ref|NP_840266.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas europaea ATCC 19718] gi|81584849|sp|Q82XT0|PNP_NITEU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|30180081|emb|CAD84083.1| pnp; polyribonucleotide nucleotidyltransferase protein [Nitrosomonas europaea ATCC 19718] Length = 708 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I++ V GS L G+T L TL E+K+ + Sbjct: 315 RIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALAITTLGTARDEQKIDALQGDYSE 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113 ++ Y M P +TG +GR G + +EI R+ RAL +V+ + Sbjct: 375 RFML-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALLAVIPPVEEFGYSMR 426 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +V +++G + A++ G ++L D LK HVA I+ G++ Sbjct: 427 VVSEVTESNGSSSMASVCGGCLSLMDA-------------GVPLKAHVAGIAMGLI 469 >gi|54298752|ref|YP_125121.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila str. Paris] gi|81369705|sp|Q5X1C7|PNP_LEGPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|53752537|emb|CAH13969.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str. Paris] Length = 729 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ + + GSCL G+T + ATL + ++ I Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGETRD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ RAL +V+ + + I + Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDTNEFPYVLRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174 + +++G + A + G +AL D LK VA ++ G++ Y + Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLIKEGDRYAV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T+ G Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKG 500 >gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp. vulgare] Length = 240 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 48/250 (19%) Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66 + NQ+R S TR + A GS GDT +L + + G G Sbjct: 12 KANQLRAYSCTRNPLERAHGSARWAQGDTVVLAA----------VYGPRPG---TRKGEN 58 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P V + +G+ G + +E + + R L+S+ L+ + I V+ DG Sbjct: 59 PEKASLEVVWKPKTGQIGRQEKEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLL 118 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGMLC-GYPIVDLDYGEDST 184 AI + AL + + H+A AI CG+L G I+D E+ Sbjct: 119 PCAINASCAAL--------------VFAGIPMKHLAVAIGCGVLPDGSVILDTSKAEEQQ 164 Query: 185 IDVDANFVMTDSGHIVEVQ------GSAER--------ATFSQDHFFAMLN---LAKDRI 227 + A+ V +S V+V+ G +ER S+D +F + A RI Sbjct: 165 LKSFAHLVFPNSSLSVDVKEPQQKDGQSERGLITSITHGVMSEDDYFNCIERGLAASARI 224 Query: 228 ADLIK--LQK 235 +D ++ LQK Sbjct: 225 SDFMRTTLQK 234 >gi|241758689|ref|ZP_04756802.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens SK114] gi|241320897|gb|EER57110.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens SK114] Length = 706 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|82750875|ref|YP_416616.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus RF122] gi|117940113|sp|Q2YXP2|PNP_STAAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|82656406|emb|CAI80825.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus RF122] Length = 698 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D + AA Sbjct: 75 -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G I++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+ ++ + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225 >gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ED133] Length = 698 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D + AA Sbjct: 75 -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G I++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+ ++ + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225 >gi|78485473|ref|YP_391398.1| polynucleotide phosphorylase/polyadenylase [Thiomicrospira crunogena XCL-2] gi|123755229|sp|Q31GJ9|PNP_THICR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78363759|gb|ABB41724.1| Polyribonucleotide nucleotidyltransferase [Thiomicrospira crunogena XCL-2] Length = 694 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 24/132 (18%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW----ITAEY-------GM 65 T +++ A+G+ +V GDT LL T + +N K G +T +Y G Sbjct: 19 TGEIARQADGAVMVAMGDTQLLVTV-------VGAKNAKAGQDFFPLTVQYQEKAYAAGR 71 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P G +KRE GR + R+I R +R + + Q+I + + GT Sbjct: 72 IP---GGFLKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSLDPEIGT 125 Query: 126 RTAAITGAWVAL 137 A+ G AL Sbjct: 126 EVPAMLGTSAAL 137 >gi|330950302|gb|EGH50562.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae Cit 7] Length = 701 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + NT G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLNTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|320160467|ref|YP_004173691.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila UNI-1] gi|319994320|dbj|BAJ63091.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila UNI-1] Length = 760 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 35/210 (16%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---------LEEKVPMWI 51 +R R ++R I +S A GS L G+T +LT AT L+ VP+ Sbjct: 315 IRPDHRTPTEIRPIWCEVGISPRAHGSGLFTRGETQVLTLATLGTPREAQELDSLVPIET 374 Query: 52 RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 + H Y P STG S R+ G + RAL V+ Sbjct: 375 KRYMH-----HYNFPPYSTGEVKPLRGQSRREIGHGA----LAERALEPVIPPEDEFPYT 425 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-- 169 + + +V+ ++G T A++ G+ +AL D +K VA ++ G++ Sbjct: 426 LRLVSEVLSSNGSTSMASVCGSTLALMDT-------------GVPIKAPVAGVAMGLIKE 472 Query: 170 --CGYPIVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T+ G Sbjct: 473 GDNAVILTDIQGLEDHLGDMDFKVAGTEKG 502 >gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus N315] gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus COL] gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JH9] gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JH1] gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. Newman] gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu3] gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus TCH130] gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9781] gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9763] gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9719] gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9635] gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9299] gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8115] gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6300] gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6224] gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5948] gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5937] gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus D30] gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 930918-3] gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus ED98] gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8117] gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9765] gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A10102] gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus 132] gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9754] gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8819] gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MR1] gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8796] gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694630|sp|Q5HGF7|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81705784|sp|Q7A5X7|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81781693|sp|Q99UJ8|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117940100|sp|Q2FHG4|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117940102|sp|Q2FZ20|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611294|sp|A7X1Q8|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611295|sp|A6QGH3|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037316|sp|A6U193|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037317|sp|A5ISF8|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037318|sp|A8Z3V4|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus N315] gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus str. Newman] gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Mu3] gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus TCH130] gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9781] gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9763] gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9719] gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9635] gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9299] gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8115] gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6300] gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6224] gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5948] gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5937] gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 930918-3] gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus D30] gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus ED98] gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A10102] gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9765] gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8117] gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Staphylococcus aureus subsp. aureus ST398] gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 04-02981] gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9754] gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8819] gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8796] gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS03] gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS01] gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA177] gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus O11] gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus O46] gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21189] Length = 698 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D + AA Sbjct: 75 -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G I++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+ ++ + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225 >gi|254796456|ref|YP_003081292.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii str. Illinois] gi|254589702|gb|ACT69064.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii str. Illinois] Length = 638 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 26/211 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR ++R IS+ GS L G T L ATL +E+V I + Sbjct: 199 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 258 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 + Y LP + G A R+ G R+ +A+++V+ + + + Sbjct: 259 ESVLLHYNFLPYAVGEVGALRAPGRREIGHG----RLALKAVKAVLPGKEVFPYTLRLVS 314 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172 ++ ++DG + A + G+ +AL D + HVA I+ G++ Sbjct: 315 EITESDGSSSMATVCGSSLALMDT-------------GVPITKHVAGIAMGLITDGARSA 361 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203 + D+ ED D+D T +G IV +Q Sbjct: 362 ILSDISGDEDMLGDMDFKVAGTRNG-IVALQ 391 >gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102] gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102] Length = 706 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +++ V GS L G+T L ATL I + G T Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G C + LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471 >gi|303286137|ref|XP_003062358.1| 3' exoribonuclease [Micromonas pusilla CCMP1545] gi|226455875|gb|EEH53177.1| 3' exoribonuclease [Micromonas pusilla CCMP1545] Length = 301 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 64/160 (40%), Gaps = 14/160 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R++S+ V A+GS LVK G T L A LE G + Sbjct: 24 RPDGRPLARARDVSVANGVVTSADGSALVKIGRTTALAAAKLEPAP-PEPTAPDVGVVEV 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113 + P + A GR SQ R I LR +VVDL L + ++ Sbjct: 83 TVELPPMCAAS-----ARPGRPTEESQRCARRIEDVLRDANVVDLRKLCIKRGVYAWRVC 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL 153 +D V+ DGG AA+ AL D D ++ +L Sbjct: 138 VDVYVLDHDGGILDAALCAVVGALKDAKVPRVDVDDRGKL 177 >gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus E1410] gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M876] gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C160] gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus D139] gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C101] gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|81651256|sp|Q6GHG1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus E1410] gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M876] gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C101] gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus D139] gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C160] gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS00] Length = 698 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D + AA Sbjct: 75 -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G I++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+ ++ + Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225 >gi|33866429|ref|NP_897988.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH 8102] gi|81574045|sp|Q7U515|PNP_SYNPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33633207|emb|CAE08412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 8102] Length = 721 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 34/237 (14%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS LV+ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ +RE GR R+ R+I R +R + Q++ C + Sbjct: 70 ---RIPGSYQRRE---GRPPERATLTARLIDRPMRPLFPAWLRDDLQVVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+TGA +A G +AA+ G+L +++ Y E Sbjct: 124 ADVLAVTGASIA-------------TLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G + VE G+ + ++ + I +LIK Q+ ++ + Sbjct: 171 GDLDLIVAGTPDGVVMVEAGGN----QLPEQDVIEAIDFGYEAICELIKAQEQLLKD 223 >gi|307611640|emb|CBX01326.1| polynucleotide phosphorylase [Legionella pneumophila 130b] Length = 729 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ + + GSCL G+T + ATL + ++ I Sbjct: 314 RIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ RAL +V+ + + I + Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174 + +++G + A + G +AL D LK VA ++ G++ Y + Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLIKEGDRYAV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T+ G Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKG 500 >gi|256544705|ref|ZP_05472077.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis ATCC 51170] gi|256399594|gb|EEU13199.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis ATCC 51170] Length = 702 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 36/221 (16%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71 +V++ G CL++ GDT LL TA +K P+ + + G +P G Sbjct: 21 KVAEQTNGECLIRTGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAV---GKIP---G 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE G+ ++ I R + R LR + + Q+I + D Sbjct: 75 GFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +AL +S + G VAA+S G + G IV+ + E +D Sbjct: 132 GASIALG--------------ISDIPFYGPVAAVSVGYVDGKFIVNPNKDEREISSLDLT 177 Query: 191 FVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 T D+ ++VE G+ E S+D + +A I ++ Sbjct: 178 VAGTADAINMVEA-GANE---LSEDEMLEAMMVAHAEIKEI 214 >gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon pisum] Length = 249 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 15/152 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55 +R GR+ ++R I V +GS ++ G+T ++ P IR + Sbjct: 9 LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIY----GPHEIRTNRAKAPN 64 Query: 56 -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 I +Y M S R +R + +S E+ + +A+ + + QI I Sbjct: 65 DSAVINCQYSMATFSRSERKRRP-----RDNKSAELTLHLKQAMATAIKTDLYPKSQIDI 119 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMED 146 V+Q+DGG + + A +AL D ME+ Sbjct: 120 FVQVLQSDGGNYSVCVNAATLALIDAGIAMEE 151 >gi|224000017|ref|XP_002289681.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana CCMP1335] gi|220974889|gb|EED93218.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana CCMP1335] Length = 721 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 23/175 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR+ N++R I + GS L G+T ++ TATL +K+ I + Sbjct: 282 RIDGRKLNEVRVIDSEAGLFPRVHGSALFTRGETQVVATATLGDSGMRQKID-RISGMEE 340 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A R+ G +R + L S D I ++ Sbjct: 341 KRFYLQYTFPPSCVGETGRVGAPGRREVGHGNLAERALVPTLPSEADF----PYAIRVES 396 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 V +++G + A++ G +AL D +K +A I+ GML G Sbjct: 397 LVTESNGSSSMASVCGGCLALMDA-------------GVPIKSPIAGIAMGMLLG 438 >gi|327404361|ref|YP_004345199.1| polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM 16823] gi|327319869|gb|AEA44361.1| Polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM 16823] Length = 719 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 10/142 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58 RL GR+ +++R I GS + G+T LTT TL K+ + + T HG Sbjct: 319 RLDGRKFDEIRPIWAEVDYLPMVHGSAVFTRGETQSLTTLTLGGKMDEQLIDGVTFHGTE 378 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG S R+ G + RAL+ V L A + I + D Sbjct: 379 KFLLHYNFPPFSTGEAKPLRGTSRREIGHGN----LALRALKPV--LPADNAYTIRLVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHD 139 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALMD 454 >gi|54295598|ref|YP_128013.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila str. Lens] gi|81367664|sp|Q5WT40|PNP_LEGPL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|53755430|emb|CAH16926.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str. Lens] Length = 729 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ + + GSCL G+T + ATL + ++ I Sbjct: 314 RIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ RAL +V+ + + I + Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174 + +++G + A + G +AL D LK VA ++ G++ Y + Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLIKEGDRYAV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T+ G Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKG 500 >gi|256005694|ref|ZP_05430650.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum DSM 2360] gi|255990325|gb|EEU00451.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum DSM 2360] gi|316940825|gb|ADU74859.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum DSM 1313] Length = 700 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 23/164 (14%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T ++++ A GS LV++GDT +L+TAT E V + + + G +P G Sbjct: 18 TGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEERLYAVGKIP---GG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE G+ ++ R+I R LR + I+ + D AA+ G Sbjct: 75 FIKRE---GKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNSPELAALLG 131 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 + +A+ + D G V A+ G++ G I++ Sbjct: 132 SSIAV-----SISDIP--------FNGPVGAVILGLIDGEVIIN 162 >gi|125972939|ref|YP_001036849.1| polynucleotide phosphorylase/polyadenylase [Clostridium thermocellum ATCC 27405] gi|281417150|ref|ZP_06248170.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum JW20] gi|187610261|sp|A3DCH7|PNP_CLOTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|125713164|gb|ABN51656.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum ATCC 27405] gi|281408552|gb|EFB38810.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum JW20] Length = 700 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 23/164 (14%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T ++++ A GS LV++GDT +L+TAT E V + + + G +P G Sbjct: 18 TGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEERLYAVGKIP---GG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE G+ ++ R+I R LR + I+ + D AA+ G Sbjct: 75 FIKRE---GKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNSPELAALLG 131 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 + +A+ + D G V A+ G++ G I++ Sbjct: 132 SSIAV-----SISDIP--------FNGPVGAVILGLIDGEVIIN 162 >gi|294011612|ref|YP_003545072.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum UT26S] gi|292674942|dbj|BAI96460.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum UT26S] Length = 771 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 18/228 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR Q+R I GS L G+T + T TL E++ + + Sbjct: 316 RIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLTGLHYE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL V+ I + D Sbjct: 376 SFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHPVLPSKEEFPYTIRVLSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D ++ + + +L+G A+ I D+ Sbjct: 432 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFAV---------ISDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T++G I +Q + A +Q+ F L AK+ Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITTMQMDIKVAGITQEIFEVALRQAKE 529 >gi|223040232|ref|ZP_03610510.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter rectus RM3267] gi|222878485|gb|EEF13588.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter rectus RM3267] Length = 735 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 4/139 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58 +R GR +R IS+ + A GSCL G T L ATL + M+ T+ G Sbjct: 342 VRADGRGLKDVRPISIETNILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGA 401 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +T ++ G V + G R + RAL +D + + +++ ++ Sbjct: 402 VTDKFMFNYNFPGFSVGEASPLKAPGRRELGHGNLAKRALAPSIDSDSPYTIRLV--SEI 459 Query: 119 IQADGGTRTAAITGAWVAL 137 ++++G + A++ G +AL Sbjct: 460 LESNGSSSMASVCGGSLAL 478 >gi|188583695|ref|YP_001927140.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium populi BJ001] gi|226702662|sp|B1ZGS7|PNP_METPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|179347193|gb|ACB82605.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium populi BJ001] Length = 745 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 26/232 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T L ATL +E+ + T Sbjct: 316 RIDGRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQII 113 Y P S G +GR G GR +EI ++ RA+R V+ + I Sbjct: 376 RFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPVLPPAHEFPYTIR 427 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + ++ +++G + A++ G ++L D + + +L+G A+ Sbjct: 428 VVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV--------- 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + D+ ED D+D TD G I +Q + A +++ L AKD Sbjct: 479 LSDILGDEDHLGDMDFKVAGTDEG-ITSLQMDIKIAGITEEIMRVALAQAKD 529 >gi|154174457|ref|YP_001407821.1| polynucleotide phosphorylase/polyadenylase [Campylobacter curvus 525.92] gi|187470952|sp|A7GX79|PNP_CAMC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|112802675|gb|EAU00019.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter curvus 525.92] Length = 735 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 12/143 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW-IRNTKHG 57 +R GR +++R IS+ V A GSCL G T L ATL + M+ I K Sbjct: 343 VRADGRALDEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDILTEKTA 402 Query: 58 WITA---EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 I Y S G +A R+ G + RAL +D+++ + +++ Sbjct: 403 LIEKFMFNYNFPGFSVGEASPLKAPGRRELGHGN----LAKRALAPSIDINSPYTIRLV- 457 Query: 115 DCDVIQADGGTRTAAITGAWVAL 137 ++++++G + A++ G +AL Sbjct: 458 -SEILESNGSSSMASVCGGALAL 479 >gi|323350507|ref|ZP_08086169.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis VMC66] gi|322123189|gb|EFX94874.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis VMC66] Length = 733 Score = 39.3 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 15/127 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTILTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVAL 137 G+ +AL Sbjct: 130 FGSSLAL 136 >gi|261419469|ref|YP_003253151.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. Y412MC61] gi|319766284|ref|YP_004131785.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y412MC52] gi|261375926|gb|ACX78669.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y412MC61] gi|317111150|gb|ADU93642.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y412MC52] Length = 723 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 17/128 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T ++K A G+ LV++GDT +L+TAT + +N +T Y G +P Sbjct: 21 TGELAKQANGAALVRYGDTVVLSTATASREA----KNVDFFPLTVNYEERLYAVGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR ++ + R+I R +R + Q++ + D AA Sbjct: 75 -GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEVAA 130 Query: 130 ITGAWVAL 137 + G+ VAL Sbjct: 131 LIGSSVAL 138 >gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii RW1] gi|187611293|sp|A5VCY9|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii RW1] Length = 774 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 18/228 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I A GS L G+T ++T TL E++ + ++ Sbjct: 314 RIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKESEQMIDGLNGLRYE 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL +V+ I + D Sbjct: 374 HFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHAVLPTKEEFPYTIRLTSD 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +A+ D ++ + + +L+G A+ I D+ Sbjct: 430 ITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAV---------ISDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T G I +Q + A +++ F L AK+ Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITEEIFKTALLQAKE 527 >gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter thermophilus DSM 20745] gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter thermophilus DSM 20745] Length = 790 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 44/234 (18%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW----ITAEY-------GM 65 T R++ A G+ V++GDT +LTT E R + G +T +Y G Sbjct: 27 TGRMAGLAHGAVTVRYGDTLVLTTVVGE-------REPREGLDFFPLTVDYEEKMYAAGK 79 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P G +KRE GR + R+ R +R + Q+I + Sbjct: 80 IP---GGFIKRE---GRPTEAAILAARLTDRPIRPLFPKGYKAEVQVITTVLSADQENAP 133 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDST 184 +I GA AL LS + G V A+ G + G +V+ E Sbjct: 134 DVLSIIGASAAL--------------MLSPIPWAGPVGAVRIGDIDGELVVNPT--EHQL 177 Query: 185 IDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ID + V+ + ++ V+G A+ S+D F + LA D I ++ +Q ++ Sbjct: 178 IDSKLDMVVAGTADAVMMVEGEADE--ISEDRFLEAVLLAHDEIKRIVAMQHEL 229 >gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus Y51MC23] gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus Y51MC23] Length = 713 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +R I + V A GS + G+T +L T TL +E++ + + Sbjct: 328 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQIIDDLGIDETD 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + VS R+ G + RALR+V+ I + D Sbjct: 388 PFLVHYNFPPFSTGEVKRLRGVSRREVGHGN----LAKRALRAVLPSQEAFPYTIRVVGD 443 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 V++++G + A + +AL D Sbjct: 444 VLESNGSSSMATVCAGSLALMDA 466 >gi|56419804|ref|YP_147122.1| polynucleotide phosphorylase/polyadenylase [Geobacillus kaustophilus HTA426] gi|81347597|sp|Q5L0I2|PNP_GEOKA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56379646|dbj|BAD75554.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Geobacillus kaustophilus HTA426] Length = 723 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 17/128 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T ++K A G+ LV++GDT +L+TAT + +N +T Y G +P Sbjct: 21 TGELAKQANGAALVRYGDTVVLSTATASREA----KNVDFFPLTVNYEERLYAVGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR ++ + R+I R +R + Q++ + D AA Sbjct: 75 -GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEVAA 130 Query: 130 ITGAWVAL 137 + G+ VAL Sbjct: 131 LIGSSVAL 138 >gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TW20] Length = 698 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T +++K A G+ LV++GDT +L+TAT K P R+ +T Y G +P Sbjct: 21 TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE GR G + R+I R +R + QI+ D + AA Sbjct: 75 -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL + D +G +A ++ G + G I++ E +D Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177 Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ ++VE G++E ++ + + I L+ Q+ ++ + Sbjct: 178 EVAGHKDAINMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225 >gi|78776629|ref|YP_392944.1| polynucleotide phosphorylase/polyadenylase [Sulfurimonas denitrificans DSM 1251] gi|123754746|sp|Q30TH2|PNP_SULDN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78497169|gb|ABB43709.1| Polyribonucleotide nucleotidyltransferase [Sulfurimonas denitrificans DSM 1251] Length = 721 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 9/141 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58 +R GR N++R IS++ V A SCL G T L T+ + M+ T G Sbjct: 340 VRADGRALNEIRPISISTNVLPSAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGT 399 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + G V S G + +E+ + RAL +V+L R + Sbjct: 400 QNENFMVHYNFPGFSVGE--ASPIMGTKRRELGHGNLAKRALEPIVNLEGQTVRLV---S 454 Query: 117 DVIQADGGTRTAAITGAWVAL 137 ++++++G + A + G ++AL Sbjct: 455 EILESNGSSSMATVCGGYMAL 475 >gi|116072761|ref|ZP_01470027.1| RNA binding S1 [Synechococcus sp. BL107] gi|116064648|gb|EAU70408.1| RNA binding S1 [Synechococcus sp. BL107] Length = 721 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 32/236 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64 REI LT R + A GS LV+ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSSGRDGIDFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++REA R R+ R+I R +R + Q++ C + Sbjct: 70 ---RIPGSYMRREA---RPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+TGA +A G +AA+ G+L +++ Y E Sbjct: 124 ADVLAVTGASIA-------------TLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + + ++ + I +LIK Q+ ++ + Sbjct: 171 GDLDLVVAGTADG-VVMVEAGANQ--LPEQDVIEAIDFGYEAIQELIKAQETLLKD 223 >gi|169827176|ref|YP_001697334.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus sphaericus C3-41] gi|226702661|sp|B1HR13|PNP_LYSSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|168991664|gb|ACA39204.1| Polyribonucleotide nucleotidyltransferase [Lysinibacillus sphaericus C3-41] Length = 704 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ LV++GDT +L+TAT+ + P+ + + + G +P G Sbjct: 22 QLAKQANGAVLVRYGDTSVLSTATMSKSPKPLDFFPLTVNYEERLYAA---GKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR ++ R+I R +R + Q+I +D + AA+ G Sbjct: 76 FIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEMAAMVG 132 Query: 133 AWVAL 137 + +AL Sbjct: 133 SSLAL 137 >gi|83941735|ref|ZP_00954197.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36] gi|83847555|gb|EAP85430.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36] Length = 711 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 40/212 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR+ +++R+I + GS L G+T L TL E+ + N K Sbjct: 318 RIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 ++ Y P S G GR GG +R IG RAL++V+ S Sbjct: 378 NFML-HYNFPPYSVGE-------VGRVGGPG---RREIGHGKLAWRALQAVLPASTDFPY 426 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + ++ +++G + A++ G +++ D LK VA ++ G++ Sbjct: 427 TIRVVSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIL 473 Query: 171 ----GYPIV-DLDYGEDSTIDVDANFVMTDSG 197 Y I+ D+ ED D+D T++G Sbjct: 474 EDDGSYAILSDILGDEDHLGDMDFKVAGTEAG 505 >gi|297530556|ref|YP_003671831.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3] gi|297253808|gb|ADI27254.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3] Length = 723 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 17/128 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T ++K A G+ LV++GDT +L+TAT + +N +T Y G +P Sbjct: 21 TGELAKQANGAVLVRYGDTVVLSTATASREA----KNVDFFPLTVNYEERLYAVGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR ++ + R+I R +R + Q++ + D AA Sbjct: 75 -GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEVAA 130 Query: 130 ITGAWVAL 137 + G+ VAL Sbjct: 131 LIGSSVAL 138 >gi|316931583|ref|YP_004106565.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris DX-1] gi|315599297|gb|ADU41832.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris DX-1] Length = 722 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 24/231 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T L TL +E+ + T Sbjct: 316 RIDGRDSKTVRSILAQAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+ V+ I + Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ GA +AL D ++ + + +L+G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T+ G I +Q + +++ L AKD Sbjct: 485 -----DEDHLGDMDFKVAGTEQG-ITSLQMDIKIGGITEEIMKVALGQAKD 529 >gi|83855213|ref|ZP_00948743.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. NAS-14.1] gi|83843056|gb|EAP82223.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. NAS-14.1] Length = 711 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 40/212 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR+ +++R+I + GS L G+T L TL E+ + N K Sbjct: 318 RIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 ++ Y P S G GR GG +R IG RAL++V+ S Sbjct: 378 NFML-HYNFPPYSVGE-------VGRVGGPG---RREIGHGKLAWRALQAVLPASTDFPY 426 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + ++ +++G + A++ G +++ D LK VA ++ G++ Sbjct: 427 TIRVVSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIL 473 Query: 171 ----GYPIV-DLDYGEDSTIDVDANFVMTDSG 197 Y I+ D+ ED D+D T++G Sbjct: 474 EEDGSYAILSDILGDEDHLGDMDFKVAGTEAG 505 >gi|78187489|ref|YP_375532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium luteolum DSM 273] gi|123582727|sp|Q3B2E2|PNP_PELLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78167391|gb|ABB24489.1| Polyribonucleotide nucleotidyltransferase [Chlorobium luteolum DSM 273] Length = 732 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 25/186 (13%) Query: 10 QMREISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY----- 63 Q + IS+ T R++K A+G+ +V+ GDT ++ T K P N + EY Sbjct: 11 QGKTISIETGRMAKQADGATVVRMGDTMVIATVVSSRKTPSV--NQDFFPLQVEYREKYY 68 Query: 64 --GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 G P G KREA R + R+I RALR + Q+II +VI + Sbjct: 69 AAGKFP---GGFFKREA---RPSEKEILSARLIDRALRPLFPTGYYHETQVII--NVISS 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D A + G A + + D + +S+V G V G+ P +D G Sbjct: 121 D-QQNDADVLGGLAASAAIM--VSDIPFENAMSEVRVGRV----NGLFIINPTIDELEGS 173 Query: 182 DSTIDV 187 D I + Sbjct: 174 DIDISI 179 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 22/149 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR Q+R I++ V A GS L G+T L TL K + N+ Sbjct: 332 RLDGRNLEQVRPITIELGVIPRAHGSALFTRGETQALVAVTLGTKKDAQSVDTLTNSADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR---ALRSVVDLSALGSRQ--- 111 Y P S G V R +GR R IG A RS + + A G ++ Sbjct: 392 RFMLHYNFPPFSVGE-VGRLGSTGR---------REIGHGNLAERS-IKMVAPGEQEFPY 440 Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHD 139 + I ++++++G + A++ G +AL D Sbjct: 441 TVRIVSEILESNGSSSMASVCGGTLALMD 469 >gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301] gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301] Length = 709 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ V GS L G+T L ATL +E+V ++ Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQVIDALQGEFKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ R+L + + A + + Sbjct: 376 RFMLHYNMPPYATGE-------TGRVGTPKRREIGHGRLAKRSLIAALPDQADFDYTMRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ G +AL D M+ + + +G+ A+ + Sbjct: 429 VSEITESNGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGLIKEGNRVAV---------L 479 Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197 D+ ED D+D T+ G Sbjct: 480 TDILGDEDHLGDMDFKVAGTEDG 502 >gi|317153855|ref|YP_004121903.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316944106|gb|ADU63157.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio aespoeensis Aspo-2] Length = 754 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 30/235 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R+ GR +R +S+ V GSCL + G+T L ATL E++ + + Sbjct: 319 LRIDGRDTTTVRALSIETGVLPMTHGSCLFRRGETSALAVATLGSTRDEQRYDSLLGDAT 378 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P G S R+ G +R I L + + I + Sbjct: 379 KRFML-HYNFPPYCVGEARMLRGTSRREVGHGALAERAIAPVLPNQDEFPF----TIRVV 433 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++++++G + A++ GA ++L D + VA I+ G LC Sbjct: 434 SEIMESNGSSSMASVCGATLSLMDA-------------GVPISAPVAGIAMG-LCKENEQ 479 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + + D+ ED+ D+D T G I +Q + + D L AKD Sbjct: 480 FFVLTDILGDEDALGDMDFKVAGTRDG-ITSIQMDIKISGIPSDVLRKALYQAKD 533 >gi|126652561|ref|ZP_01724726.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905] gi|126590689|gb|EAZ84805.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905] Length = 704 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 15/125 (12%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ LV++GDT +L+TAT+ + P+ + + + G +P G Sbjct: 22 QLAKQANGAVLVRYGDTSVLSTATMSKSPKPLDFFPLTVNYEERLYAA---GKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR ++ R+I R +R + Q+I +D + AA+ G Sbjct: 76 FIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEMAAMVG 132 Query: 133 AWVAL 137 + +AL Sbjct: 133 SSLAL 137 >gi|332981620|ref|YP_004463061.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis 50-1 BON] gi|332699298|gb|AEE96239.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis 50-1 BON] Length = 708 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 20/149 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR+ +++R IS + GS L G T +LT ATL +E++ + + Sbjct: 312 RPDGRKLDEIRPISCEVGLIPRVHGSGLFTRGQTQVLTIATLGAPGDEQMLEDLSLEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y M P STG EA R GR R IG RAL ++ Sbjct: 372 RYIHHYNMPPYSTG-----EAKMMRGPGR-----REIGHGALAERALEPMIPSQEEFPYT 421 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC 140 I + +V+ ++G T A++ G+ +AL D Sbjct: 422 IRLVSEVMSSNGSTSQASVCGSTLALMDA 450 >gi|326914729|ref|XP_003203675.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Meleagris gallopavo] Length = 864 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 48/210 (22%), Positives = 95/210 (45%), Gaps = 39/210 (18%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62 N+ E+S + +++++A+G+ +V+ GDT ++ TA + K +P+ + + A Sbjct: 134 NRKMELS-SGKLARFADGAAVVQLGDTAVMVTAVSKTKPSASQFMPLVVDYRQKA---AA 189 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G +P N ++RE G +EI R+I R++R + + QI+ C+++ Sbjct: 190 AGRIPT---NYLRREL-----GTTDKEILTSRVIDRSIRPLFPVGYFYDTQIL--CNLLA 239 Query: 121 ADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177 DG AI GA AL LS + G V A+ G++ G +++ Sbjct: 240 VDGVNDPDVLAINGASAAL--------------ALSDIPWNGPVGAVRVGLVDGETVINP 285 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207 + S+ ++ +V ++ +AE Sbjct: 286 TRKQMSSSTLNLVVAAAPQNQVVMLEATAE 315 >gi|257453578|ref|ZP_05618868.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus SK60] gi|257449036|gb|EEV23989.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus SK60] Length = 713 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57 R+ GR +R + + V Y GS L G+T L T TL V M + TK Sbjct: 318 RIDGRDLQTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNMIDTLAGTKQD 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y S G +GR G + +EI R+ R +++++ S I I Sbjct: 378 HFMLHYNFPSYSVGE-------TGRDSGPKRREIGHGRLARRGVQAMLPDSDRFPYVIRI 430 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA +AL D LK VA I+ G++ Sbjct: 431 VSDITESNGSSSMASVCGASLALMDA-------------GVPLKAPVAGIAMGLV 472 >gi|282899414|ref|ZP_06307381.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505] gi|281195678|gb|EFA70608.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505] Length = 718 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 51/237 (21%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73 ++ A GS L++ GDT +L TAT E +P+ + + + R G Sbjct: 22 LAPQAGGSVLIESGDTAVLVTATRSEAREGVDFLPLTVDYEERLYAAG------RIPGGI 75 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVV------DLSALG---SRQIIIDCDVIQADGG 124 ++RE GR R+ R+I R LR + DL + S ++ DV+ Sbjct: 76 MRRE---GRPPERAILTSRLIDRPLRPLFPSWLRDDLQIIALTLSMDELVPPDVL----- 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A ++Q+ G +AA+ G++ I++ Y E Sbjct: 128 ----AVTGASIATL--------------IAQIPFYGPMAAVRVGLVGDDFIINPTYAEIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G I+ G+ + + ++ + + DLI+ Q+D+I+ Sbjct: 170 AGDLDLVVAGSPDGVIMVEAGANQ---LPERDIIEAIDFGYEAVRDLIQAQRDLIAE 223 >gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens] gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens] Length = 240 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 56/132 (42%), Gaps = 25/132 (18%) Query: 29 LVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNR------------ 73 L KF D + T + + V + +RNTK I A YG PR + Sbjct: 7 LPKFYDRLVCRTGAVSQAVGSAYIELRNTK--IICAVYG--PREVAKKQEFNIQATVACE 62 Query: 74 VKREAVSGR------QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 +K S R Q + +E ++I +AL+ VV L QI I V+Q DG Sbjct: 63 LKFATFSCRRRRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDGSVLG 122 Query: 128 AAITGAWVALHD 139 AIT A VAL D Sbjct: 123 GAITAASVALAD 134 >gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1003] gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1003] Length = 715 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E+ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis C4D1M] gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis C4D1M] Length = 715 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E+ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|296160625|ref|ZP_06843440.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1] gi|295889151|gb|EFG68954.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1] Length = 716 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E+ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|212696535|ref|ZP_03304663.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM 7454] gi|212676471|gb|EEB36078.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM 7454] Length = 702 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 33/179 (18%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71 +V++ G CL++ GDT LL TA +K P+ + + G +P G Sbjct: 21 KVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAV---GKIP---G 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE G+ ++ I R + R LR + + Q+I + D Sbjct: 75 GFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDL--DYGEDSTIDV 187 GA +AL +S + G VAA+S G + G IV+ D E S++D+ Sbjct: 132 GASIALG--------------ISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSLDL 176 >gi|192288867|ref|YP_001989472.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris TIE-1] gi|226702683|sp|B3QAB0|PNP_RHOPT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|192282616|gb|ACE98996.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris TIE-1] Length = 722 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 24/231 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V GS L G+T L TL +E+ + T Sbjct: 316 RIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQALVVTTLGTGEDEQYVDSLSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+ V+ I + Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ GA +AL D ++ + + +L+G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T+ G I +Q + A +++ L AKD Sbjct: 485 -----DEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKD 529 >gi|262374052|ref|ZP_06067329.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii SH205] gi|262311063|gb|EEY92150.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii SH205] Length = 697 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L G+T L T TL + +T G T Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471 >gi|33240756|ref|NP_875698.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81664238|sp|Q7VAZ5|PNP_PROMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33238284|gb|AAQ00351.1| Ribonuclease PH [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 722 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 32/236 (13%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 REI LT R + A GS L++ GDT +L TAT + +P+ + + Sbjct: 13 REIRLTTGRYAPQAGGSVLIECGDTAVLVTATQGQGREGADFLPLSCDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE GR R+ I R+I R LR + Q++ C + Sbjct: 70 ---RIPGSFMRRE---GRPPERATLISRLIDRPLRPLFPNWMRDDIQVVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+TG+ +A G +AA+ G+L +++ + E Sbjct: 124 ADILAVTGSSMA-------------TLLAGIPFYGPMAAVRVGLLGDDFVLNPSFREIER 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G ++ GS + ++ ++ + + +LIK Q+ ++ + Sbjct: 171 GDLDLVVAGTPDGVVMVEAGSNQ---LTEQDVIEAIDFGYEAVNELIKAQESILKD 223 >gi|295676033|ref|YP_003604557.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1002] gi|295435876|gb|ADG15046.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1002] Length = 711 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E+ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYRE 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|325849667|ref|ZP_08170870.1| polyribonucleotide nucleotidyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480008|gb|EGC83086.1| polyribonucleotide nucleotidyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 702 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 33/179 (18%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71 +V++ G CL++ GDT LL TA +K P+ + + G +P G Sbjct: 21 KVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAV---GKIP---G 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE G+ ++ I R + R LR + + Q+I + D Sbjct: 75 GFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDL--DYGEDSTIDV 187 GA +AL +S + G VAA+S G + G IV+ D E S++D+ Sbjct: 132 GASIALG--------------ISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSLDL 176 >gi|260550547|ref|ZP_05824757.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp. RUH2624] gi|260406462|gb|EEW99944.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp. RUH2624] Length = 697 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L G+T L T TL + +T G T Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471 >gi|159903819|ref|YP_001551163.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9211] gi|226702676|sp|A9BBJ7|PNP_PROM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|159888995|gb|ABX09209.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 722 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 34/235 (14%) Query: 12 REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 REI LT R + A GS L++ GDT +L TAT +P+ + + Sbjct: 13 REIRLTTGRYAPQAGGSVLIECGDTAVLVTATQSPGREGADFLPLICDYEERLYAAG--- 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 R G+ ++RE GR R+ I R+I R LR + Q++ C + Sbjct: 70 ---RIPGSFMRRE---GRPPERATLISRLIDRPLRPLFPSWMRDDIQVVATCLSLDERVP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 + A+T + +A L+++ G +AA+ G+L +++ + E Sbjct: 124 SDVLAVTASSMAT--------------LLAEIPFYGPMAAVRVGLLGDDFVLNPSFREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+D T G +V ++ A + S+ ++ + + +LIK Q+ ++ Sbjct: 170 RGDLDLVVAGTPDG-VVMIEAGANQ--LSEQDVIEAVDFGYEAVTELIKAQQSIL 221 >gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1001] gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1001] Length = 715 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E+ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160] gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160] Length = 711 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E+ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYRE 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit Rrp41-like protein [Tribolium castaneum] Length = 282 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 5/136 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R+I L V A+GS ++ T ++ + ++P + G I Sbjct: 42 RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYC 101 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P S R + Q Q+ ++ +AL S V + Q+ I V+ Sbjct: 102 EFKFAPFSCHKRRLHQ-----QDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHN 156 Query: 122 DGGTRTAAITGAWVAL 137 DG +AAIT A VAL Sbjct: 157 DGAALSAAITAAGVAL 172 >gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome [Pichia pastoris GS115] gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome [Pichia pastoris GS115] gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Pichia pastoris CBS 7435] Length = 246 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 22/185 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57 +R+ GR+ N++R R++ + A+GS V+ G+T ++ + NT+ G Sbjct: 9 LRVDGRRWNELRRFYC--RINTHPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKG 66 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + + P ST R K R R QE+ ++ VV L I ++ Sbjct: 67 SLDIKLHVSPFSTTERRK----VTRNDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVR 122 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ DGG A +AL D + D +++A+S G+ ++DL Sbjct: 123 VLAQDGGLLAACCNAITLALVDAGIALYD-------------YISAVSAGVFDNQILLDL 169 Query: 178 DYGED 182 + E+ Sbjct: 170 NRLEE 174 >gi|296330884|ref|ZP_06873359.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674402|ref|YP_003866074.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151889|gb|EFG92763.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412646|gb|ADM37765.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 705 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEY--GMLPRSTGNR 73 T +++K A G+ ++++GDT +L+TAT +E P+ + Y G +P G Sbjct: 21 TGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP---GGF 77 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 +KRE GR ++ R+I R +R + Q+I + D + AA+ G+ Sbjct: 78 IKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134 Query: 134 WVAL 137 +AL Sbjct: 135 SLAL 138 >gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase/polyadenylase [Burkholderia xenovorans LB400] gi|122970578|sp|Q142H7|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia xenovorans LB400] Length = 716 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E+ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|50083658|ref|YP_045168.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ADP1] gi|81393846|sp|Q6FF12|PNP_ACIAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49529634|emb|CAG67346.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Acinetobacter sp. ADP1] Length = 697 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L G+T L T TL + +T G T Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471 >gi|218245144|ref|YP_002370515.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC 8801] gi|257058170|ref|YP_003136058.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC 8802] gi|226702645|sp|B7K339|PNP_CYAP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218165622|gb|ACK64359.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8801] gi|256588336|gb|ACU99222.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8802] Length = 718 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 31/225 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 ++ A GS L++ GDT +L TAT + +P+ + + + R G Sbjct: 22 LAPQAGGSVLIQSGDTAVLVTATRATGREGIDFLPLTVDYEERLYAAG------RIPGGF 75 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++RE GR ++ I R+I R LR + QII + + A+TGA Sbjct: 76 LRRE---GRPPEKAILISRLIDRPLRPLFPQWLRDDIQIIATTLSMDEEVPPDVLAVTGA 132 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 +A+ + + G +AA+ G++ I++ Y E D+D Sbjct: 133 SIAV---------IAARIPFF----GPMAAVRVGLIGDDFIINPTYREIEIGDLDLVVAG 179 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + G +V V+ A + + ++ + + DLI+ Q+DV+ Sbjct: 180 SPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIQAQRDVM 221 >gi|325124334|gb|ADY83857.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter calcoaceticus PHEA-2] Length = 695 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L G+T L T TL + +T G T Sbjct: 315 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 374 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 375 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 430 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 469 >gi|21674467|ref|NP_662532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium tepidum TLS] gi|81790880|sp|Q8KBY3|PNP_CHLTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21647655|gb|AAM72874.1| polyribonucleotide nucleotidyltransferase [Chlorobium tepidum TLS] Length = 733 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 20/148 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR Q+R IS+ + A GS L G+T L T TL K +T K Sbjct: 332 RLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDTLTDDKDK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P S G GR GG +R IG RA++ V+ Sbjct: 392 RFMLHYNFPPFSVGE-------IGRVGGAG---RREIGHGNLAERAIKMVMPSEQEFPYT 441 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHD 139 + + D+++++G + A++ G +A D Sbjct: 442 VRLVSDILESNGSSSMASVCGGTLAAMD 469 >gi|293610159|ref|ZP_06692460.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827391|gb|EFF85755.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 697 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L G+T L T TL + +T G T Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471 >gi|225871841|ref|YP_002753295.1| polyribonucleotide nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196] gi|254782698|sp|C1F8M1|PNP_ACIC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225791918|gb|ACO32008.1| polyribonucleotide nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196] Length = 806 Score = 38.5 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 27/206 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R R +++R+I++ V GS L G+T L TATL +++ + K Sbjct: 316 VRPDRRGFDEIRQITIEVGVLPRTHGSALFTRGETQALVTATLGTNDDSQRLETFEGEQK 375 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G + V R+ G +R I L D S R + Sbjct: 376 KRFML-HYNFPPFSVGEVGRMTGVGRREVGHGALAERAISAVLPG-EDESPYALRVV--- 430 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GY 172 D+++++G + A++ GA +AL D LKG VA ++ G++ Y Sbjct: 431 SDILESNGSSSMASVCGASLALMDA-------------GIPLKGAVAGVAMGLVKEGDEY 477 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSG 197 I+ D+ ED D+D T G Sbjct: 478 AILTDIAGAEDHYGDMDFKVAGTRKG 503 >gi|39933509|ref|NP_945785.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris CGA009] gi|81564252|sp|Q6NCN8|PNP_RHOPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|39647355|emb|CAE25876.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris CGA009] Length = 722 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 24/231 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V GS L G+T + TL +E+ + T Sbjct: 316 RIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQAMVVTTLGTGEDEQYVDSLSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+ V+ I + Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ GA +AL D ++ + + +L+G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T++G I +Q + A +++ L AKD Sbjct: 485 -----DEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALGQAKD 529 >gi|328468614|gb|EGF39614.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 1816] Length = 728 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + VAL + D +G +A + G + G +++ + D+ Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S++ + + I L + Q+ +I+ Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 897 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 45/211 (21%), Positives = 82/211 (38%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR ++R I+ + A GS L G+T L TL +++ + + Sbjct: 447 RSDGRSACELRPINSQCGILPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVDTEES 506 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A + R+ G +R + L VD I ++ Sbjct: 507 KSFYLQYTFPPSSVGEVGRTGAPNRREIGHGMLAERALEPILPPEVDF----PYTIRVES 562 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 563 TITESNGSSSMASVCGGCLALQDA-------------GVPIKFPVAGIAMGLVLDTHEFG 609 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D + G Sbjct: 610 GDGTPLILSDITGSEDASGDMDFKVAGNEHG 640 >gi|298293847|ref|YP_003695786.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM 506] gi|296930358|gb|ADH91167.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM 506] Length = 718 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 30/235 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I V A GS L G+T L ATL +E+ + T Sbjct: 317 VRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 Y P S G +GR G +R IG RA+R ++ + Sbjct: 377 ERFLLHYNFPPFSVGE-------TGRMGSPG---RREIGHGKLAWRAIRPILPPAHEFPY 426 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + ++++++G + A + G +AL D M + +L+G A+ +L Sbjct: 427 TLRAVSEILESNGSSSMATVCGTSLALMDAGVPMRRPVAGIAMGLILEGEKFAVLSDILG 486 Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D TD G + +Q + A +++ L AKD Sbjct: 487 ---------DEDHLGDMDFKVAGTDKG-VTALQMDIKIAGITEEIMKVALAQAKD 531 >gi|291532399|emb|CBL05512.1| polyribonucleotide nucleotidyltransferase [Megamonas hypermegale ART12/1] Length = 574 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 10/125 (8%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++K A G+ LV++G+T +L TAT E V + + G +P G Sbjct: 17 TGKMAKQANGAVLVRYGETVVLVTATASAEPREGVDFFPLTVDYEEKMYAVGKIP---GG 73 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR + R+I R +R + QI+ ++ D A + G Sbjct: 74 FIKRE---GRPAESAILNSRLIDRPIRPLFPEGYRNDVQIVATVLSVEQDNAPEIAGMIG 130 Query: 133 AWVAL 137 A AL Sbjct: 131 ASCAL 135 >gi|262375116|ref|ZP_06068350.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii SH145] gi|262310129|gb|EEY91258.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii SH145] Length = 697 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L G+T L T TL + +T G T Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471 >gi|288574757|ref|ZP_06393114.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570498|gb|EFC92055.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 749 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 55/249 (22%), Positives = 97/249 (38%), Gaps = 28/249 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNTK 55 R GR+ +++R +S V GS + G+T L TATL ++ + N Sbjct: 312 RADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLGEDDQLIDGLKHNEP 371 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P S G R+ G + RAL ++ + + Sbjct: 372 NKSFLLHYNFPPYSVGEVRPMRGPGRREIGHGA----LAERALTPIIPDDTEFPYVVRVV 427 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPI 174 D+++++G + A+I G +AL +K HVA I+ G++ G + Sbjct: 428 SDILESNGSSSQASICGGSLAL-------------MSAGVPIKRHVAGIAMGLIKEGDDV 474 Query: 175 V---DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 V D+ ED D+D T G + +Q + +++ L AKD ++ Sbjct: 475 VVLTDIQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITREILKQALGQAKDARMAIL 533 Query: 232 KLQKDVISN 240 + + ISN Sbjct: 534 DVMEQAISN 542 >gi|182680095|ref|YP_001834241.1| polyribonucleotide nucleotidyltransferase [Beijerinckia indica subsp. indica ATCC 9039] gi|257096681|sp|B2ICY4|PNP_BEII9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|182635978|gb|ACB96752.1| Polyribonucleotide nucleotidyltransferase [Beijerinckia indica subsp. indica ATCC 9039] Length = 715 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 20/179 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I + A GS L G+T L ATL +E++ + T Sbjct: 317 IRIDGRDVKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQLIDNLEGTYR 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 Y P S G +GR G +R IG RA+ ++ A Sbjct: 377 ERFLLHYNFPPYSVGE-------AGRMGSPG---RREIGHGKLAWRAIHPMLPTPAEFPY 426 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 I + ++ +++G + A + G+ +AL D ++ + + +L+G A+ +L Sbjct: 427 TIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERYAVLSDIL 485 >gi|16800436|ref|NP_470704.1| polynucleotide phosphorylase/polyadenylase [Listeria innocua Clip11262] gi|81526977|sp|Q92C23|PNP_LISIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|16413841|emb|CAC96599.1| polynucleotide phosphorylase (PNPase) [Listeria innocua Clip11262] Length = 723 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + VAL + D +G +A + G + G +++ + D+ Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S++ + + I L + Q+ +I+ Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|313623917|gb|EFR94027.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL J1-023] Length = 723 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + VAL + D +G +A + G + G +++ + D+ Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S++ + + I L + Q+ +I+ Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|313619127|gb|EFR90919.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL S4-378] Length = 520 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + VAL + D +G +A + G + G +++ + D+ Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S++ + + I L + Q+ +I+ Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|302795634|ref|XP_002979580.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii] gi|300152828|gb|EFJ19469.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii] Length = 291 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 14/132 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + R S++ A+GS LVK G+T +L A LE P G ++ Sbjct: 27 VRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGNTTMLAGAKLETMEPAA-DTPDQGCLS 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL------GSRQI 112 ++ ++P RV+ GR + I + AL S VVDL L + I Sbjct: 86 VDF-VMPPICSPRVR----PGRPAEEAYVITEQLQNALLSSGVVDLRELSIVSGKAAWMI 140 Query: 113 IIDCDVIQADGG 124 +D + ADG Sbjct: 141 YLDVYCLDADGS 152 >gi|189459946|ref|ZP_03008731.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136] gi|189433319|gb|EDV02304.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136] Length = 727 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 RL GR+ ++R I Y GS + G+T L+T T L+EK+ + + Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPYPHGSSIFTRGETQSLSTVTLGTKLDEKIVDDVLDQHKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + +++ D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPADYPYCVRVV--SD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455 >gi|126640439|ref|YP_001083423.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii ATCC 17978] Length = 662 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R + + V + A GS L G+T L T TL + +T G T Sbjct: 282 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 341 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 342 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 396 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 397 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 436 >gi|217964522|ref|YP_002350200.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Listeria monocytogenes HCC23] gi|254824610|ref|ZP_05229611.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J1-194] gi|254852619|ref|ZP_05241967.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL R2-503] gi|254932354|ref|ZP_05265713.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes HPB2262] gi|255520235|ref|ZP_05387472.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes FSL J1-175] gi|300765429|ref|ZP_07075411.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N1-017] gi|254782725|sp|B8DFZ6|PNP_LISMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217333792|gb|ACK39586.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Listeria monocytogenes HCC23] gi|258605934|gb|EEW18542.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL R2-503] gi|293583910|gb|EFF95942.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes HPB2262] gi|293593848|gb|EFG01609.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J1-194] gi|300513866|gb|EFK40931.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N1-017] gi|307570912|emb|CAR84091.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes L99] gi|332311774|gb|EGJ24869.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. Scott A] Length = 723 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + VAL + D +G +A + G + G +++ + D+ Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S++ + + I L + Q+ +I+ Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|290893558|ref|ZP_06556541.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J2-071] gi|290556903|gb|EFD90434.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J2-071] Length = 723 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + VAL + D +G +A + G + G +++ + D+ Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S++ + + I L + Q+ +I+ Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|300676790|gb|ADK26666.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia albicollis] gi|300676888|gb|ADK26760.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia albicollis] Length = 765 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 24/138 (17%) Query: 11 MREISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEY 63 R++ L+ +++K+A+GS +V+ GDT ++ TA + K +P+ + + A Sbjct: 35 FRKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAA 91 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 G +P N ++RE G +EI R+I R++R + QI+ C+++ Sbjct: 92 GRIPT---NYLRREL-----GSTDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAV 141 Query: 122 DG--GTRTAAITGAWVAL 137 DG AI GA AL Sbjct: 142 DGVNDPDILAINGASAAL 159 >gi|297828842|ref|XP_002882303.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp. lyrata] gi|297328143|gb|EFH58562.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp. lyrata] Length = 922 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNT----KH 56 R GR +++R I+ + A GS L G+T L TL +K + I N ++ Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A S R+ G +R + L S D I ++ Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDF----PYTIRVES 562 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 VI+++G + A++ G +AL D +K VA I+ GM+ Sbjct: 563 TVIESNGSSSMASVCGGCLALQDA-------------GVPVKCSVAGIAMGMVWDTEEFG 609 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D + G Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG 640 >gi|283769562|ref|ZP_06342458.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa W1219] gi|283103830|gb|EFC05216.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa W1219] Length = 732 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 35/229 (15%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 ++K A GS +V++ DT +L+TAT + ++T +T Y G +P G Sbjct: 22 IAKQAGGSVVVRYNDTTILSTATASSQA----KDTDFFPLTVLYQEKMYAAGKIP---GG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 ++RE GR + R+I R +R + Q++ D + A++ G Sbjct: 75 FLRRE---GRPSEHATLTARLIDRPIRPLFAEGFRNEVQVVNTVLSNDPDASSEMASLFG 131 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + +AL C+ + G VA + + G +++ E++ D+ Sbjct: 132 SSLAL--CISDIP-----------FNGPVAGVQVVRVNGEFLINPSVEENAKGDLHLTVA 178 Query: 193 MTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T ++VE G+ E S++ A L + I L ++Q++VI++ Sbjct: 179 GTKQAINMVEA-GAKE---VSEETMLAALQFGHEAIQKLCEIQEEVIAS 223 >gi|254829912|ref|ZP_05234567.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 10403S] Length = 723 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + VAL + D +G +A + G + G +++ + D+ Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S++ + + I L + Q+ +I+ Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|114798182|ref|YP_762114.1| polynucleotide phosphorylase/polyadenylase [Hyphomonas neptunium ATCC 15444] gi|123128295|sp|Q0BWM9|PNP_HYPNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114738356|gb|ABI76481.1| polyribonucleotide nucleotidyltransferase [Hyphomonas neptunium ATCC 15444] Length = 713 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 30/233 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+ +Q+R I GS L G+T + ATL +E+ + TK Sbjct: 317 RIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGTSDDEQYIDGLDGTKKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P S G +GR GG +R IG RAL++V+ Sbjct: 377 KFMLHYNFPPYSVGE-------TGRMGGAG---RREIGHGKLAWRALKAVLPKHEDFPYT 426 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 I + ++ +++G + A + G +A+ D + + + +L+G A+ Sbjct: 427 IRMVSEITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEFAV------- 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + D+ ED D+D T++G + +Q + A ++D L AK Sbjct: 480 --LSDILGDEDHLGDMDFKVAGTENG-VTSLQMDIKVAGITKDIMGKALEQAK 529 >gi|332851858|ref|ZP_08433761.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013150] gi|332867443|ref|ZP_08437603.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013113] gi|332873102|ref|ZP_08441059.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6014059] gi|322506580|gb|ADX02034.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 1656-2] gi|323516459|gb|ADX90840.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii TCDC-AB0715] gi|332729643|gb|EGJ60979.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013150] gi|332733983|gb|EGJ65127.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013113] gi|332738614|gb|EGJ69484.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6014059] Length = 695 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R + + V + A GS L G+T L T TL + +T G T Sbjct: 315 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 374 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 375 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 430 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 469 >gi|302791854|ref|XP_002977693.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii] gi|300154396|gb|EFJ21031.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii] Length = 291 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 14/132 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + R S++ A+GS LVK G+T +L A LE P G ++ Sbjct: 27 VRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGNTTMLAGAKLETMEPAA-DTPDQGCLS 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL------GSRQI 112 ++ ++P RV+ GR + I + AL S VVDL L + I Sbjct: 86 VDF-VMPPICSPRVR----PGRPAEEAYVITEQLQNALLSSGVVDLRELSIVSGKAAWMI 140 Query: 113 IIDCDVIQADGG 124 +D + ADG Sbjct: 141 YLDVYCLDADGS 152 >gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group] Length = 248 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 27/201 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R S TR A GS GDT +L + K G Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAA----------VYGPKPG---T 51 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 G P V + ++G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 52 RKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG----HVA-AISCGMLC-GYPIV 175 DG + L + C ++ S V G H+A AI CG+L G I+ Sbjct: 112 DGSVS--------FCRNVLLSIVSGCLLDYEHSLVFAGIPLKHLAVAIGCGVLEDGEVIL 163 Query: 176 DLDYGEDSTIDVDANFVMTDS 196 D + E+ + A+ V +S Sbjct: 164 DTNKAEEQQLKSFAHLVFPNS 184 >gi|148651980|ref|YP_001279073.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter sp. PRwf-1] gi|187611275|sp|A5WBT2|PNP_PSYWF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148571064|gb|ABQ93123.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter sp. PRwf-1] Length = 704 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 19/171 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + +R + + V Y GS L G+T L T TL + + ++ G I Sbjct: 320 RIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNLIDSLAGTIQD 379 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + + P + RE V R R R+ R +++++ S I + ++ Sbjct: 380 HFMLHYNFPHYSVGETGREGVPKR---REIGHGRLARRGVQAMLPDSDRFPYVIRVVSEI 436 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +++G + A++ GA +AL D LK VA I+ G++ Sbjct: 437 TESNGSSSMASVCGASLALMDA-------------GVPLKAPVAGIAMGLV 474 >gi|215277019|ref|NP_001135843.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Rattus norvegicus] gi|149044835|gb|EDL98021.1| polyribonucleotide nucleotidyltransferase 1 [Rattus norvegicus] Length = 784 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+G +V+ GDT ++ TA + K +P+ + + A G +P N Sbjct: 62 KLARFADGCAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +EI R+I R++R + Q++ C+++ DG Sbjct: 116 YLRREI-----GSSDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA AL LS + G V A+ GM+ G +V+ E S+ + Sbjct: 169 AINGASAAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTL 214 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234 >gi|160915053|ref|ZP_02077266.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991] gi|158432852|gb|EDP11141.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991] Length = 735 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 16/128 (12%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-------PMWIRNTKHGWITAEYGMLPRS 69 T ++K A GS LV++GDT +L+ AT ++ P+ + + + G +P Sbjct: 30 TGEIAKQAGGSVLVRYGDTVVLSAATASKQAKEGIDFFPLTVSFEEKLY---SVGKIP-- 84 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G ++RE GR + RMI R +R + Q++ + D T AA Sbjct: 85 -GGFLRRE---GRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQDCSTEMAA 140 Query: 130 ITGAWVAL 137 + GA +AL Sbjct: 141 MFGASLAL 148 >gi|46907557|ref|YP_013946.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes serotype 4b str. F2365] gi|47094124|ref|ZP_00231847.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 4b H7858] gi|226223932|ref|YP_002758039.1| polynucleotide phosphorylase [Listeria monocytogenes Clip81459] gi|81403374|sp|Q71ZZ1|PNP_LISMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|259534135|sp|C1L2N7|PNP_LISMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|46880825|gb|AAT04123.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|47017509|gb|EAL08319.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 4b H7858] gi|225876394|emb|CAS05103.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 723 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + VAL + D +G +A + G + G +++ + D+ Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S++ + + I L + Q+ +I+ Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|224476402|ref|YP_002634008.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus carnosus subsp. carnosus TM300] gi|254782735|sp|B9DPE0|PNP_STACT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222421009|emb|CAL27823.1| polyribonucleotide nucleotidyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 701 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 36/236 (15%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64 R +S+ T +++K A G+ LV++GDT +L+TAT ++ P+ + + + G Sbjct: 15 RPLSIETGQMAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLMVNYEEKMYAA---G 71 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G KRE GR + R+I R +R + QII D Sbjct: 72 KIP---GGFKKRE---GRPADEATLTARLIDRPIRPLFPKGYRHDVQIINMVLSADPDCS 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGED 182 AA+ G+ +AL + D FQ G +A ++ G + G +++ ++ E Sbjct: 126 PEMAAMIGSSMAL-----SVSDIP--FQ------GPIAGVNVGYIDGEYVINPTVEQKEV 172 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 S +D++ D+ ++VE G++E ++ + + I L+ Q+++I Sbjct: 173 SRLDLEVAG-HRDAVNMVEA-GASE---ITEKEMLDAIFFGHEEIKRLVDFQQEII 223 >gi|169634530|ref|YP_001708266.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii SDF] gi|226702588|sp|B0VLR7|PNP_ACIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169153322|emb|CAP02433.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Acinetobacter baumannii] Length = 697 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R + + V + A GS L G+T L T TL + +T G T Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471 >gi|315282187|ref|ZP_07870650.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL S4-120] gi|313614173|gb|EFR87854.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL S4-120] Length = 723 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + VAL + D +G +A + G + G +++ + D+ Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S++ + + I L + Q+ +I+ Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis] Length = 247 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 7/148 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHGW 58 R GR+ +++R + V A+GS ++ G+T +L + +R+ + Sbjct: 13 RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCF 72 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I E+ S+ R KR R + +++ I + + V QI I V Sbjct: 73 INCEFSQAMFSSAERKKR----SRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQV 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED 146 + +DG A + A +AL D M+D Sbjct: 129 LHSDGSLYCACVNAATLALIDAGIAMKD 156 >gi|15605776|ref|NP_213153.1| polynucleotide phosphorylase/polyadenylase [Aquifex aeolicus VF5] gi|81343315|sp|O66593|PNP_AQUAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|2982946|gb|AAC06562.1| polyribonucleotide nucleotidyltransferase [Aquifex aeolicus VF5] Length = 775 Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 85/212 (40%), Gaps = 25/212 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWI 59 +R+ GR+ N++R I + + G+ + G T T TL + I G + Sbjct: 312 VRIDGRKPNEIRPIWIEVHPFERPHGNAIFTRGQTQAYVTVTLGTPDEALIIETIAEGEV 371 Query: 60 ----TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y M P S G R+ G +R I L + + I + Sbjct: 372 FKRFMLHYSMPPFSVGEAKPWGPPRRREIGHGALAERAIEPLLPPEEEYPFI----IRVV 427 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---Y 172 D+++++G T A + GA +AL D M+D NK HVA I+ G++ Y Sbjct: 428 SDILESNGSTSMATVCGASLALFDAGVPMKD--NK---------HVAGIAMGLILEKDRY 476 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQ 203 I+ D+ ED D+D T G I VQ Sbjct: 477 VILSDILGDEDHLGDMDFKVAGTKDG-ITSVQ 507 >gi|169797384|ref|YP_001715177.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AYE] gi|184156693|ref|YP_001845032.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii ACICU] gi|213155801|ref|YP_002317846.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB0057] gi|215484824|ref|YP_002327059.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB307-0294] gi|239500905|ref|ZP_04660215.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB900] gi|260556276|ref|ZP_05828495.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii ATCC 19606] gi|301348030|ref|ZP_07228771.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB056] gi|301510806|ref|ZP_07236043.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB058] gi|301594566|ref|ZP_07239574.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB059] gi|187471097|sp|A3M1M7|PNP_ACIBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702585|sp|B7H0Z1|PNP_ACIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702586|sp|B7I3U1|PNP_ACIB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702587|sp|B2I2Q0|PNP_ACIBC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702589|sp|B0VEA3|PNP_ACIBY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169150311|emb|CAM88208.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Acinetobacter baumannii AYE] gi|183208287|gb|ACC55685.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Acinetobacter baumannii ACICU] gi|193076200|gb|ABO10821.2| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii ATCC 17978] gi|213054961|gb|ACJ39863.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB0057] gi|213985856|gb|ACJ56155.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB307-0294] gi|260410331|gb|EEX03630.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii ATCC 19606] Length = 697 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R + + V + A GS L G+T L T TL + +T G T Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471 >gi|30678905|ref|NP_187021.2| RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/ RNA binding / nucleic acid binding / polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] gi|25991185|gb|AAN76771.1|AF450480_1 polynucleotide phosphorylase [Arabidopsis thaliana] gi|332640453|gb|AEE73974.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] Length = 922 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNT----KH 56 R GR +++R I+ + A GS L G+T L TL +K + I N ++ Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A S R+ G +R + L S D I ++ Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDF----PYTIRVES 562 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 VI+++G + A++ G +AL D +K VA I+ GM+ Sbjct: 563 TVIESNGSSSMASVCGGCLALQDA-------------GVPVKCSVAGIAMGMVWDTEEFG 609 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D + G Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG 640 >gi|85714171|ref|ZP_01045160.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A] gi|85699297|gb|EAQ37165.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A] Length = 723 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 24/231 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T + TL +E+ + T Sbjct: 321 RIDGRDVKTVRAIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSLSGTYKE 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+ V+ I + Sbjct: 381 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 433 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A + G+ +AL D ++ + + +L+G A+ +L Sbjct: 434 VSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLSDILG---- 489 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T+SG I +Q + A +++ L AKD Sbjct: 490 -----DEDHLGDMDFKVAGTESG-ITSLQMDIKIAGITEEIMKVALAQAKD 534 >gi|16803371|ref|NP_464856.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes EGD-e] gi|47095916|ref|ZP_00233519.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 1/2a F6854] gi|224501726|ref|ZP_03670033.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes FSL R2-561] gi|254827592|ref|ZP_05232279.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N3-165] gi|254898504|ref|ZP_05258428.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes J0161] gi|254912005|ref|ZP_05262017.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes J2818] gi|254936332|ref|ZP_05268029.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes F6900] gi|284801716|ref|YP_003413581.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5578] gi|284994858|ref|YP_003416626.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5923] gi|81509180|sp|Q8Y7F1|PNP_LISMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|16410747|emb|CAC99409.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes EGD-e] gi|47015662|gb|EAL06592.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 1/2a F6854] gi|258599969|gb|EEW13294.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N3-165] gi|258608922|gb|EEW21530.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes F6900] gi|284057278|gb|ADB68219.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5578] gi|284060325|gb|ADB71264.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5923] gi|293589970|gb|EFF98304.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes J2818] Length = 723 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + VAL + D +G +A + G + G +++ + D+ Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S++ + + I L + Q+ +I+ Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|291296202|ref|YP_003507600.1| 3' exoribonuclease [Meiothermus ruber DSM 1279] gi|290471161|gb|ADD28580.1| 3' exoribonuclease [Meiothermus ruber DSM 1279] Length = 714 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR Q+R I + V GS + G+T +L TL + V T+ Sbjct: 325 RADGRTPTQVRPIWIESNVLPKTHGSAIFSRGETQVLGVVTLGTGRDAQLVDDLGIETED 384 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P STG + VS R+ G + R LR+V+ I + Sbjct: 385 PFLV-HYNFPPYSTGEVRRLRGVSRREVGHGN----LAKRGLRAVLPSREEFPYTIRVVG 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 DV++++G + A + +AL D LK HVA ++ G++ Sbjct: 440 DVLESNGSSSMATVCAGCLALLDA-------------GVPLKKHVAGVAMGLV 479 >gi|116872762|ref|YP_849543.1| polynucleotide phosphorylase/polyadenylase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460999|sp|A0AID2|PNP_LISW6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116741640|emb|CAK20764.1| polynucleotide phosphorylase (PNPase) [Listeria welshimeri serovar 6b str. SLCC5334] Length = 723 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + VAL + D +G +A + G + G +++ + D+ Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S++ + + I L + Q+ +I+ Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|77919161|ref|YP_356976.1| polynucleotide phosphorylase/polyadenylase [Pelobacter carbinolicus DSM 2380] gi|123574179|sp|Q3A4A1|PNP_PELCD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77545244|gb|ABA88806.1| polynucleotide phosphorylase/cytidylate kinase [Pelobacter carbinolicus DSM 2380] Length = 699 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 8/144 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +N +R I+ + A GS L G+T L A L +E+ +++ + Sbjct: 312 VRIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTSKDEQRMDNVQSMEF 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G R R+ G +R I + L + D + + Sbjct: 372 KKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSIAQVLPNHDDF----PYTLRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A++ GA +AL D Sbjct: 428 DILESNGSSSMASVCGASLALMDA 451 >gi|255075435|ref|XP_002501392.1| predicted protein [Micromonas sp. RCC299] gi|226516656|gb|ACO62650.1| predicted protein [Micromonas sp. RCC299] Length = 291 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 15/124 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR R +S R K +G C V+ GDT +L + + + P R + G IT Sbjct: 25 LRVDGRGPFDTRPVSY-RFGPK--DGMCEVQLGDTRVLAVVSAKLEPPSGARGNE-GTIT 80 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL----GSRQIII 114 P ++ N GR G ++QE+ ++ RA+R VD+ +L G R + Sbjct: 81 INVEFSPMASPN-----FEPGRPGEQAQELALVLERAIRETGAVDVESLCVLAGRRVWHV 135 Query: 115 DCDV 118 CDV Sbjct: 136 RCDV 139 >gi|186683767|ref|YP_001866963.1| polynucleotide phosphorylase/polyadenylase [Nostoc punctiforme PCC 73102] gi|226702669|sp|B2J2V3|PNP_NOSP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|186466219|gb|ACC82020.1| 3' exoribonuclease [Nostoc punctiforme PCC 73102] Length = 718 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 53/237 (22%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73 ++ A GS L++ GDT +L TAT + +P+ + + + R G Sbjct: 22 LAPQAGGSVLIESGDTSVLVTATRSQAREGIDFLPLTVDYEERLYAAG------RIPGGI 75 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVV------DLSALG---SRQIIIDCDVIQADGG 124 ++RE GR ++ R+I R +R + DL + S ++ DV+ Sbjct: 76 MRRE---GRPPEKTILTSRLIDRPMRPLFPSWLRDDLQIIALTLSMDELVPPDVL----- 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A ++Q+ G +AA+ G++ I++ Y E Sbjct: 128 ----AVTGASIAT--------------LIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIE 169 Query: 184 TIDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D+D V+ S H ++ V+ A + + ++ + + DLIK Q+D+++ Sbjct: 170 AGDLD--LVVAGSPHGVIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIKAQQDLVA 222 >gi|7413616|emb|CAB85703.1| putative polynucleotide phosphorylase [Arabidopsis thaliana] Length = 922 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNT----KH 56 R GR +++R I+ + A GS L G+T L TL +K + I N ++ Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A S R+ G +R + L S D I ++ Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDF----PYTIRVES 562 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 VI+++G + A++ G +AL D +K VA I+ GM+ Sbjct: 563 TVIESNGSSSMASVCGGCLALQDA-------------GVPVKCSVAGIAMGMVWDTEEFG 609 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D + G Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG 640 >gi|26991392|ref|NP_746817.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida KT2440] gi|81439660|sp|Q88DW0|PNP_PSEPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|24986460|gb|AAN70281.1|AE016668_7 polyribonucleotide nucleotidyltransferase [Pseudomonas putida KT2440] Length = 701 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M K VA I+ G++ Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLV 470 >gi|8928246|sp|O87792|PNP_PSEPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|3650364|emb|CAA77048.1| polyribonucleotide nucleotidyltransferase [Pseudomonas putida] Length = 701 Score = 38.1 bits (87), Expect = 0.95, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M K VA I+ G++ Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLV 470 >gi|299771757|ref|YP_003733783.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1] gi|298701845|gb|ADI92410.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1] Length = 697 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L G+T L T TL + +T G T Sbjct: 317 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471 >gi|255319690|ref|ZP_05360898.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SK82] gi|262380027|ref|ZP_06073182.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SH164] gi|255303219|gb|EET82428.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SK82] gi|262298221|gb|EEY86135.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SH164] Length = 699 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R + + V + A GS L G+T L TATL + +T G T Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTATLGNTRDALMVDTLSGTKTD 376 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + + Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPPVDRFPYVLRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA +AL D LK VA I+ G++ Sbjct: 432 DITESNGSSSMASVCGASLALMDA-------------GVPLKAPVAGIAMGLV 471 >gi|6006870|gb|AAF00646.1|AC009540_23 putative polynucleotide phosphorylase [Arabidopsis thaliana] gi|6091752|gb|AAF03462.1|AC009327_1 putative polynucleotide phosphorylase [Arabidopsis thaliana] Length = 948 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNT----KH 56 R GR +++R I+ + A GS L G+T L TL +K + I N ++ Sbjct: 473 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 532 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A S R+ G +R + L S D I ++ Sbjct: 533 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDF----PYTIRVES 588 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 VI+++G + A++ G +AL D ++ CS VA I+ GM+ Sbjct: 589 TVIESNGSSSMASVCGGCLALQDAGVPVK-CS------------VAGIAMGMVWDTEEFG 635 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D + G Sbjct: 636 GDGSPLILSDITGAEDASGDMDFKVAGNEDG 666 >gi|325697461|gb|EGD39347.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK160] Length = 733 Score = 38.1 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 35/231 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 G+ +AL +S + G +A + G + G I++ + ++ Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLEL 175 Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S+D L + + +LI Q+++++ Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDVMLEALLKGHEAVKELIAFQEEIVA 222 >gi|323138133|ref|ZP_08073206.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC 49242] gi|322396595|gb|EFX99123.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC 49242] Length = 717 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 26/233 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I V GS L G+T L ATL +E+ + T Sbjct: 315 IRIDGRDVKTVRPIVAEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQI 112 Y P S G +GR G GR +EI ++ RA+R ++ +A + Sbjct: 375 ERFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPMLPAAAEFPYTL 426 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + ++ +++G + A + G +AL D ++ + + +L+G A+ Sbjct: 427 RVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPTAGIAMGLILEGERFAV-------- 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + D+ ED D+D T +G + +Q + A +++ L AKD Sbjct: 479 -LSDILGDEDHLGDMDFKVAGTSNG-VTSLQMDIKIAGITEEIMKVALAQAKD 529 >gi|299534733|ref|ZP_07048063.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus fusiformis ZC1] gi|298729821|gb|EFI70366.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus fusiformis ZC1] Length = 704 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 15/125 (12%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ LV++GDT +L TAT+ + P+ + + + G +P G Sbjct: 22 QLAKQANGAALVRYGDTSVLATATMSKSPKPLDFFPLTVNYEERLYAA---GKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR ++ R+I R +R + Q+I D + AA+ G Sbjct: 76 FIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDPDCTSEMAAMVG 132 Query: 133 AWVAL 137 + +AL Sbjct: 133 SSLAL 137 >gi|125718838|ref|YP_001035971.1| polynucleotide phosphorylase/polyadenylase [Streptococcus sanguinis SK36] gi|187611302|sp|A3CQG6|PNP_STRSV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|125498755|gb|ABN45421.1| Polyribonucleotide nucleotidyltransferase, putative [Streptococcus sanguinis SK36] Length = 733 Score = 38.1 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 35/231 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 G+ +AL +S + G +A + G + G I++ + ++ Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGKFIINPSKEQKEVSLLEL 175 Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S+D L + + +LI Q+++++ Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDIMLEALLKGHEAVKELIAFQEEIVA 222 >gi|315122006|ref|YP_004062495.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495408|gb|ADR52007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 699 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 8/144 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R+IS + + GS G T + TL +E+ + T+ Sbjct: 312 IRMDGRDVETVRDISAQVGLLQRTHGSSFFSRGSTQAIVVVTLGTKEDEQYVDSLAGTQR 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A S R+ G R+ RA+ ++ +A + I Sbjct: 372 NDFMMHYNFFPFSVGEVGRIGAPSRREIGHG----RLARRAIHPILPQAAQFPYTLRIVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 ++ ++G + A + GA +AL D Sbjct: 428 EITGSNGSSSMATVCGASLALMDA 451 >gi|262280783|ref|ZP_06058566.1| polyribonucleotide nucleotidyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262257683|gb|EEY76418.1| polyribonucleotide nucleotidyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 697 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L G+T L T TL + +T G T Sbjct: 317 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471 >gi|121609766|ref|YP_997573.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter eiseniae EF01-2] gi|187611331|sp|A1WLP8|PNP_VEREI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|121554406|gb|ABM58555.1| 3' exoribonuclease [Verminephrobacter eiseniae EF01-2] Length = 757 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58 R+ GR +R I + V A GS L G+T L ATL E+ I + Sbjct: 317 RIDGRDTRTVRPIEIRAGVLPRAHGSALFTRGETQALAVATLGTERDAQRIDALAGEYDD 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 377 RFMLHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471 >gi|218259530|ref|ZP_03475243.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii DSM 18315] gi|218225061|gb|EEC97711.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii DSM 18315] Length = 743 Score = 38.1 bits (87), Expect = 1.00, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ ++R I + GS + G+T L+T TL +EK+ + N Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKADEKMIDDVLNHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL+ ++ ++I D Sbjct: 379 RFLLHYNFPPFSTGEAKASRGVGRREIGHGN----LAHRALKRMIPTDYPYVVRVI--SD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALRDA 455 >gi|171058181|ref|YP_001790530.1| polynucleotide phosphorylase/polyadenylase [Leptothrix cholodnii SP-6] gi|226702660|sp|B1Y823|PNP_LEPCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|170775626|gb|ACB33765.1| Polyribonucleotide nucleotidyltransferase [Leptothrix cholodnii SP-6] Length = 767 Score = 38.1 bits (87), Expect = 1.00, Method: Compositional matrix adjust. Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I + V GS L G+T L ATL +++ + + Sbjct: 317 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTDQDSQRIDALAGDFRD 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y M P +TG + R+ G R+ RAL ++ I + Sbjct: 377 SFLF-HYNMPPFATGEVGRMGTTKRRETGHG----RLAKRALVPLLPPKDEFGYTIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G +A+ D M K HVA I+ G++ Sbjct: 432 EITESNGSSSMASVCGGCLAMMDAGVPM-------------KAHVAGIAMGLI 471 >gi|332365788|gb|EGJ43545.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK355] Length = 733 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 35/231 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 G+ +AL +S + G +A + G + G I++ + ++ Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLEL 175 Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S+D L + + +LI Q+++++ Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDIMLEALLKGHEAVKELIAFQEEIVA 222 >gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus SA-01] gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus SA-01] Length = 714 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 25/174 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKV--PMWIRNTK 55 R GR +R I + V GS + G+T +L T TL +E++ + I T+ Sbjct: 328 RADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLGTVTLGTGRDEQIIDDLGIDETE 387 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P STG + VS R+ G + RAL++V+ I + Sbjct: 388 KFLV--HYNFPPFSTGEVKRLRGVSRREIGHGN----LAKRALKAVLPPEEAFPYTIRVV 441 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 DV++++G + A + +AL D LK VA ++ G++ Sbjct: 442 GDVLESNGSSSMATVCAGCLALMDA-------------GVPLKAPVAGVAMGLV 482 >gi|311252595|ref|XP_003125174.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Sus scrofa] Length = 487 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 40/187 (21%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+GS +V+ GDT ++ TA + K +P+ + + A G +P N Sbjct: 62 KLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +EI R+I R++R + QI+ C+++ DG Sbjct: 116 YLRREI-----GSSDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNEPDVL 168 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA VAL LS + G + A+ GM+ G +V+ E S+ + Sbjct: 169 AINGASVALS--------------LSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTL 214 Query: 188 DANFVMT 194 N V+T Sbjct: 215 --NLVVT 219 >gi|104780032|ref|YP_606530.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas entomophila L48] gi|122985959|sp|Q1IF39|PNP_PSEE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|95109019|emb|CAK13715.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Pseudomonas entomophila L48] Length = 701 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483 >gi|224047480|ref|XP_002196971.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Taeniopygia guttata] Length = 936 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 42/202 (20%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K+A+GS +V+ GDT ++ TA + K +P+ + + A G +P N Sbjct: 215 KLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 268 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128 ++RE G +EI R+I R++R + QI+ C+++ DG Sbjct: 269 YLRREL-----GSTDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNDPDIL 321 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA AL LS + G + A+ G++ G +++ E S+ + Sbjct: 322 AINGASAAL--------------ALSDIPWNGPIGAVRVGLVDGETVINPTRKEMSSSAL 367 Query: 188 DANFVMTDSGH--IVEVQGSAE 207 N V+ + H +V ++ +AE Sbjct: 368 --NLVVAGALHSQVVMLEATAE 387 >gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus DSM 14977] gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus DSM 14977] Length = 721 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 26/205 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR ++R I + V + GS + G+T +L T TL +E++ + + Sbjct: 326 RADGRGPAEIRPIWIEVDVLPRSHGSAIFTRGETQVLGTVTLGTGRDEQIIDDLGLDESE 385 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + VS R+ G + RAL+ ++ I + D Sbjct: 386 DFLVHYNFPPYSTGEVKRLRGVSRREVGHGN----LAKRALKPMLPEKDAFPYTIRVVGD 441 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYPI 174 V++++G + A + +AL D +K VA I+ G++ G P+ Sbjct: 442 VLESNGSSSMATVCAGCLALMDA-------------GVPIKKPVAGIAMGLVKPEEGEPV 488 Query: 175 V--DLDYGEDSTIDVDANFVMTDSG 197 V D+ ED+ D+D T G Sbjct: 489 VLTDILGMEDALGDMDFKVTGTRDG 513 >gi|160947658|ref|ZP_02094825.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270] gi|158446792|gb|EDP23787.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270] Length = 702 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 11/131 (8%) Query: 12 REISLT-RRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 RE+ +T +V++ A GSCLV+ G+T +L A E V + + G + Sbjct: 12 RELKVTIGKVAEQANGSCLVQCGETVVLVNACASKEPREGVDFFPLSCDFEEKLYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR +S R+I R LR + Q+I ++ D Sbjct: 72 P---GGFIKRE---GRPSEKSILTSRLIDRPLRPLFPEGYRNDVQVIATALSVEQDNQPD 125 Query: 127 TAAITGAWVAL 137 A+ G+ +AL Sbjct: 126 ILAMIGSSIAL 136 >gi|95929621|ref|ZP_01312363.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas acetoxidans DSM 684] gi|95134318|gb|EAT15975.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas acetoxidans DSM 684] Length = 699 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 8/173 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR+ N++R IS V A GS L G+T L + TL +E+ I+ + Sbjct: 312 IRIDGRKMNEIRPISCEVGVLPRAHGSALFTRGETQALVSTTLGTASDEQRMDNIQGMEF 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G R R+ G +R + + D + I Sbjct: 372 KKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSATKIMPEFDDF----PYTVRIVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++++++G + A++ GA ++L D +D + + +G AI +L Sbjct: 428 EILESNGSSSMASVCGASMSLMDAGVPAKDAVAGIAMGLIKEGDDIAILSDIL 480 >gi|296132896|ref|YP_003640143.1| polyribonucleotide nucleotidyltransferase [Thermincola sp. JR] gi|296031474|gb|ADG82242.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR] Length = 735 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 16/128 (12%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T R++K A G+ ++GDT +L TAT P +T +Y G +P Sbjct: 41 TGRMAKQATGAVFCRYGDTAVLVTATCS---PEPREGIDFFPLTVDYEERLYAVGKIP-- 95 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR ++ R+I R +R + I+ + D A Sbjct: 96 -GGFIKRE---GRPSEKAILSSRLIDRPIRPLFPKGYRNDVHIVATVLSVDQDNAPDVTA 151 Query: 130 ITGAWVAL 137 I GA AL Sbjct: 152 INGASAAL 159 >gi|262370055|ref|ZP_06063382.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii SH046] gi|262315094|gb|EEY96134.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii SH046] Length = 697 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L G+T L T TL + +T G T Sbjct: 317 RIDGRDTKTVRAIDVQVGVLGRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471 >gi|161527941|ref|YP_001581767.1| exosome complex RNA-binding protein Rrp42 [Nitrosopumilus maritimus SCM1] gi|160339242|gb|ABX12329.1| 3' exoribonuclease [Nitrosopumilus maritimus SCM1] Length = 272 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 32/236 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-T 60 R+ GR ++ RE+S+ A GS V+ GDT ++ ++ P K +I T Sbjct: 24 RVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGVKIQPDRPFPDTGDKGLFICT 83 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112 AE +LP S +G G E+ R++ R +R ++D+S L + + Sbjct: 84 AE--LLPLS-----HPTVETGPPGPEVIELARVVDRGIRESHMIDVSQLVIEKDKSVIGV 136 Query: 113 IIDCDVIQADGG-------TRTAAI----TGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161 D V+ DG TAA+ + W + D +E ++ + Sbjct: 137 FADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAPALVEGEEVDVPITTIP---- 192 Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217 +++ G + + IVD + E +++D G+I +Q + F+QD Sbjct: 193 VSVTMGKIGNHIIVDPNGDEWASMDARITITSDSDGNICALQKGGDDG-FTQDEIV 247 >gi|255003073|ref|ZP_05278037.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. Puerto Rico] Length = 805 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +Q+R I + + + GS L GDT L L +E+V + Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115 Y + G EA + R GR +EI ++ RA+ V+ A I + Sbjct: 380 RFLLHYNFPSYAVG-----EAAALRPPGR-REIGHGKLAWRAIHPVLPTKADFPYTIRVV 433 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ ++DG + A + GA +AL D LK VA I+ G++ Sbjct: 434 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 474 >gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] Length = 705 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 79/214 (36%), Gaps = 45/214 (21%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR NQ+R I V GS L G+T L T TL + M + + G Sbjct: 326 RIDGRATNQVRAIDCQVGVLPRTHGSALFTRGETQALVTITLGTESDMQMTESLEGVAKQ 385 Query: 59 -ITAEYGMLPRSTGN------RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSAL 107 Y P S G +RE GR R E G A+RSV Sbjct: 386 RFMLHYNFPPYSVGEARRFGPPGRREIGHGRLARRGVEAVLPSMEKFGYAIRSV------ 439 Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167 ++ +++G + A++ G +AL D +K VA ++ G Sbjct: 440 --------SEITESNGSSSMASVCGTSLALMDA-------------GVPVKAAVAGVAMG 478 Query: 168 MLC---GYPIV-DLDYGEDSTIDVDANFVMTDSG 197 ++ GY ++ D+ ED D+D T G Sbjct: 479 LILEQDGYAVLTDILGDEDHLGDMDFKVAGTREG 512 >gi|328944853|gb|EGG39013.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1087] Length = 733 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 35/231 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 G+ +AL +S + G +A + G + G I++ + ++ Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQIGYVDGEFIINPSKEQKEVSLLEL 175 Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S+D L + + +LI Q+++++ Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDVMLEALLKGHEAVKELIAFQEEIVA 222 >gi|254994938|ref|ZP_05277128.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. Mississippi] gi|255004198|ref|ZP_05278999.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. Virginia] Length = 805 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +Q+R I + + + GS L GDT L L +E+V + Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115 Y + G EA + R GR +EI ++ RA+ V+ A I + Sbjct: 380 RFLLHYNFPSYAVG-----EAAALRPPGR-REIGHGKLAWRAIHPVLPTKADFPYTIRVV 433 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ ++DG + A + GA +AL D LK VA I+ G++ Sbjct: 434 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 474 >gi|170719911|ref|YP_001747599.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida W619] gi|226702679|sp|B1J2B3|PNP_PSEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169757914|gb|ACA71230.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida W619] Length = 701 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483 >gi|167035698|ref|YP_001670929.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida GB-1] gi|189037313|sp|B0KHX3|PNP_PSEPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|166862186|gb|ABZ00594.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida GB-1] Length = 701 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483 >gi|312963078|ref|ZP_07777563.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens WH6] gi|311282589|gb|EFQ61185.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens WH6] Length = 701 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|156400116|ref|XP_001638846.1| predicted protein [Nematostella vectensis] gi|156225970|gb|EDO46783.1| predicted protein [Nematostella vectensis] Length = 710 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 35/204 (17%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIRN 53 R GRQ +++R I + K GS L K G+T + +TAT + + + Sbjct: 305 RCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISEAVGG 364 Query: 54 TKHGWITAEYGMLPRSTGNRVK--REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 +K Y P ST N VK R + R+ G +R + L + + Sbjct: 365 SKEKQFMLHYEFPPFST-NEVKQRRGSFDRREIGHGALAERALVPVLPDELPFT------ 417 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + +V+ ++G + A+ +A+ D +K HVA +CG+ Sbjct: 418 LRLTAEVLGSNGSSSLASACAGSLAMMDA-------------GVPIKSHVAGSACGL--- 461 Query: 172 YPIVDLDYGEDSTIDVDANFVMTD 195 + D + S D+D ++TD Sbjct: 462 --VTSSDAEDASKRDIDNYQLLTD 483 >gi|150009352|ref|YP_001304095.1| polynucleotide phosphorylase/polyadenylase [Parabacteroides distasonis ATCC 8503] gi|255016204|ref|ZP_05288330.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. 2_1_7] gi|256842357|ref|ZP_05547860.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13] gi|187610323|sp|A6LFK9|PNP_PARD8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149937776|gb|ABR44473.1| polyribonucleotide nucleotidyltransferase [Parabacteroides distasonis ATCC 8503] gi|256735964|gb|EEU49295.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13] Length = 746 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ ++R I + GS + G+T L+T TL +EK+ + N + Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL+ ++ + ++I D Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHGN----LAHRALKRMIPDNYPYVVRVI--SD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALRDA 455 >gi|254458763|ref|ZP_05072187.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales bacterium GD 1] gi|207084529|gb|EDZ61817.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales bacterium GD 1] Length = 727 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 9/141 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58 +R GR ++R IS++ V A SCL G+T L T+ + M+ T G Sbjct: 346 VRADGRALTEVRPISISTNVLPKAHSSCLFTRGETQALVVLTMGGPKDAQMFESLTDAGT 405 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + G V S G + +E+ + RAL +VDL R + Sbjct: 406 QNENFMVHYNFPGFSVGE--ASPIMGTKRRELGHGNLAKRALEPIVDLDGQTVRLV---S 460 Query: 117 DVIQADGGTRTAAITGAWVAL 137 ++++++G + A + G ++AL Sbjct: 461 EILESNGSSSMATVCGGYMAL 481 >gi|118579404|ref|YP_900654.1| polynucleotide phosphorylase/polyadenylase [Pelobacter propionicus DSM 2379] gi|187610304|sp|A1AMM6|PNP_PELPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118502114|gb|ABK98596.1| Polyribonucleotide nucleotidyltransferase [Pelobacter propionicus DSM 2379] Length = 706 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-------PMWIRNTKHGWITAEYGMLPRS 69 T +++K A G+ +VK GDT +L TA +++ P+ + T+ + G +P Sbjct: 18 TGKMAKQANGAVVVKSGDTMVLVTAVAQKEAKEGQDFFPLTVNYTEKAYAG---GKIP-- 72 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G+ +REA R R+I R +R + + L QII D R + Sbjct: 73 -GSFFRREA---RPSDPETLTCRLIDRPIRPLFPENFLNDTQIIATVVSADKDHDPRILS 128 Query: 130 ITGAWVALH 138 + GA AL Sbjct: 129 MLGASAALE 137 >gi|325276169|ref|ZP_08141974.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51] gi|324098706|gb|EGB96747.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51] Length = 701 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M K VA I+ G++ Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLV 470 >gi|148549775|ref|YP_001269877.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida F1] gi|187611272|sp|A5W983|PNP_PSEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148513833|gb|ABQ80693.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida F1] gi|313500616|gb|ADR61982.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida BIRD-1] Length = 701 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M K VA I+ G++ Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLV 470 >gi|71665831|ref|XP_819881.1| ribosomal RNA processing protein 41A [Trypanosoma cruzi strain CL Brener] gi|70885202|gb|EAN98030.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi] Length = 252 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 13/151 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57 +RL GR+ + R ++L +G C V G L T P + N +K+ Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSG----LATVCASVYGPREVTNRLESKYN 68 Query: 58 --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 IT E + + R + R+ S+E+ + RSVV LS + QI I Sbjct: 69 ECIITCEVAIAAFAGEKRRAPQ----RRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHIC 124 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMED 146 +V++ DG + A I A +AL D M D Sbjct: 125 VEVLRQDGSDKAACINAACLALVDACVAMRD 155 >gi|298377863|ref|ZP_06987813.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19] gi|301312258|ref|ZP_07218175.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3] gi|298265309|gb|EFI06972.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19] gi|300829680|gb|EFK60333.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3] Length = 746 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ ++R I + GS + G+T L+T TL +EK+ + N + Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL+ ++ + ++I D Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHGN----LAHRALKRMIPDNYPYVVRVI--SD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALRDA 455 >gi|226951862|ref|ZP_03822326.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC 27244] gi|294649119|ref|ZP_06726561.1| polyribonucleotide nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226837402|gb|EEH69785.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC 27244] gi|292825002|gb|EFF83763.1| polyribonucleotide nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 714 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L G+T L T TL + +T G T Sbjct: 334 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 393 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + P + RE+ G + +EI R+ R +++V+ + I I Sbjct: 394 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 448 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+ +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 449 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 488 >gi|327310388|ref|YP_004337285.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis 768-20] gi|326946867|gb|AEA11973.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis 768-20] Length = 273 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 28/205 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +Q+RE+S+T V A+GS G T ++ + P + G + Sbjct: 28 VRIDGRTPDQLREVSITTNVVNTADGSAEALLGKTRVVAGVKVGLGQP-FPDAPDEGVLI 86 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ-----II 113 +LP ++ + G + E+ R++ R +R VD L Q + Sbjct: 87 VNAEILPHASP-----YSEIGPPDETAIELARVVDRGIRHSGFVDFKKLAIDQNKVYVLW 141 Query: 114 IDCDVIQADGG------------TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161 +D V+ DG R+ + A+ D D +NK L L Sbjct: 142 VDLYVLNDDGNLVDAANLAALAALRSTMLPS---AVKDETGVKLDRNNKTALPSDLSKAP 198 Query: 162 AAISCGMLCGYPIVDLDYGEDSTID 186 A+S G + IVD ++ E+ ++D Sbjct: 199 IAVSIGKIDNRLIVDPNFEEELSLD 223 >gi|220903340|ref|YP_002478652.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|257096688|sp|B8J1X9|PNP_DESDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219867639|gb|ACL47974.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 743 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + + A GS L + G+T L ATL ++ G +T Sbjct: 324 RIDGRDTTTVRPIQIQTGLLPRAHGSALFRRGETKSLVVATLGSSTDEQRMDSLTGDVTK 383 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G VK VS R+ G + ++LR V+ A + + + Sbjct: 384 RFMLHYNFPPFSVGE-VKPVRVSRREIGHGA----LAEKSLRPVLPADADFPFTLRVVAE 438 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 ++++G + AA+ G ++L D Sbjct: 439 TMESNGSSSMAAVCGGSLSLMDA 461 >gi|327291858|ref|XP_003230637.1| PREDICTED: exosome complex exonuclease RRP41-like, partial [Anolis carolinensis] Length = 188 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + ++ + STG R KR RQ + E+ + + + + QI I + Sbjct: 15 VNCQFSLATFSTGER-KRRPHGDRQ---TSEMSLHLKQTFEAAILTQLYPRSQIDIYVQI 70 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGG A++ A +A+ D L+ +V A S G + P+ DL+ Sbjct: 71 LQADGGNYCASVNAATLAVIDA-------------GIPLRDYVCASSAGFIEDTPLADLN 117 Query: 179 YGEDST 184 Y E+++ Sbjct: 118 YVEEAS 123 >gi|262384733|ref|ZP_06077866.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B] gi|262293714|gb|EEY81649.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B] Length = 746 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ ++R I + GS + G+T L+T TL +EK+ + N + Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL+ ++ + ++I D Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHGN----LAHRALKRMIPDNYPYVVRVI--SD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALRDA 455 >gi|28193987|gb|AAO33354.1|AF465249_1 polynucleotide phosphorylase [Mus musculus] Length = 748 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+G +++ GDT ++ TA + K +P+ + + A G +P N Sbjct: 28 KLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 81 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +E+ R+I R++R + Q++ C+++ DG Sbjct: 82 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 134 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA VAL LS + G V A+ GM+ G +V+ E S+ + Sbjct: 135 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 180 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 181 NLVVAGAPKSQIVMLEASAE 200 >gi|85710513|ref|ZP_01041577.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1] gi|85687691|gb|EAQ27696.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1] Length = 762 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 8/172 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+ +Q+R I + GS L G+T + T TL E++ + + Sbjct: 320 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLSYS 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R+ G ++ RALR V+ + I + D Sbjct: 380 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAFRALRPVLPDAEEFPYTIRVLSD 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A + G +++ D + + + +L+G A+ +L Sbjct: 436 ITESNGSSSMATVCGGALSMMDAGVPLARPVSGIAMGLILEGEDFAVLSDIL 487 >gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa] gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa] Length = 243 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 29/216 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +S + V A GS GDT KV + K G Sbjct: 5 RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDT----------KVSAAVYGPKAGTKKN 54 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E P V + +G+ G +E + ++ R L+S+ L+ + I + Sbjct: 55 EN---PEKACVEVIWKPKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVND 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDY 179 DG AI A AL D +++ H+A C L GY I+D Sbjct: 112 DGALLVCAINAACAALVD--------------ARIPMKHLAVAICCCLADVGYVILDPTK 157 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215 E+ + A V +S V ++GS+ S +H Sbjct: 158 LEEQKMKGFAYLVFPNSVLSVLLEGSSLVEGESTEH 193 >gi|221128137|ref|XP_002160444.1| PREDICTED: similar to 3 exoribonuclease [Hydra magnipapillata] Length = 437 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 20/148 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GRQ R IS+ + G C V+ G+T +L + E P+ R T+ G + Sbjct: 24 IRLDGRQAFDYRNISIQFGIDY---GCCEVQLGETRVLAQTSCELVKPIGTRPTE-GQLH 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 + P ++ + +GR + EI R+I R ++ SR ID + + Sbjct: 80 LNVDLSPMASPS-----FETGRMTSQGLEINRLIERCIKE--------SR--CIDVESLC 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCS 148 G + +I V L+DC ++ DCS Sbjct: 125 LIAGEKVWSIRVDIVVLNDC-GNILDCS 151 >gi|237750416|ref|ZP_04580896.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC 43879] gi|229373946|gb|EEO24337.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC 43879] Length = 734 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 11/140 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR ++REIS+ + GS G T L T TL + + I Sbjct: 353 RADGRALREIREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQNDAQTQEGILTQGKS 412 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 I Y P S G A S R+ G AL+++ A I + + Sbjct: 413 KIIFHYNFPPFSVGEAYPIGASSRRELGHG-------NLALKAIESNVANTPHTIRLVSE 465 Query: 118 VIQADGGTRTAAITGAWVAL 137 ++Q++G + A++ GA +AL Sbjct: 466 ILQSNGSSSMASVCGASLAL 485 >gi|154490390|ref|ZP_02030651.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC 43184] gi|154089001|gb|EDN88045.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC 43184] Length = 743 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ ++R I + GS + G+T L+T TL +EK+ + N Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKADEKMIDDVLNHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL+ ++ ++I D Sbjct: 379 RFLLHYNFPPFSTGEAKASRGVGRREIGHGN----LAHRALKRMIPTDYPYVVRVI--SD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALRDA 455 >gi|241763284|ref|ZP_04761341.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii 2AN] gi|241367559|gb|EER61846.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii 2AN] Length = 747 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58 R+ GR +R I + V A GS L G+T L TL E+ I + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLGTERDAQRIDALAGEYED 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 377 RFMLHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAAVLPTKEEFPYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471 >gi|258648734|ref|ZP_05736203.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC 51259] gi|260851047|gb|EEX70916.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC 51259] Length = 768 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 RL GRQ ++R I GS + G+T L T T L+EK+ + + + Sbjct: 325 RLDGRQTTEIRPIWCEAGPLPMPHGSAIFTRGETQALATTTLGTRLDEKMIDDVLDKSYQ 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL++ + + +I+ D Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKNQIPADFPYTVRIV--SD 438 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + ++L D Sbjct: 439 ILESNGSSSMATVCAGTLSLLDA 461 >gi|254479099|ref|ZP_05092451.1| polyribonucleotide nucleotidyltransferase, RNA binding domain family [Carboxydibrachium pacificum DSM 12653] gi|214034948|gb|EEB75670.1| polyribonucleotide nucleotidyltransferase, RNA binding domain family [Carboxydibrachium pacificum DSM 12653] Length = 328 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 29/148 (19%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 M L+GR + + T +V++ A G+ VK+GDT +L TA + + G Sbjct: 8 MELAGR-----KLVVQTGKVAQQANGAAWVKYGDTVVLVTACAS-------KEPREGIDF 55 Query: 58 -WITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109 +T EY G +P G +KRE G+ ++ R+I R +R + Sbjct: 56 FPLTVEYEERLYSIGKIP---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPEGYRND 109 Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVAL 137 Q+I + D A+ G+ VAL Sbjct: 110 VQVIATVLSVDPDAQPEIVAMIGSSVAL 137 >gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phytofirmans PsJN] gi|226702630|sp|B2T2E3|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phytofirmans PsJN] Length = 718 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T + ATL +E+ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVVATLGTKGDEQNIDALEGEYRE 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL + + + I + Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477 >gi|58617084|ref|YP_196283.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium str. Gardel] gi|75357076|sp|Q5FHK5|PNP_EHRRG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|58416696|emb|CAI27809.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium str. Gardel] Length = 789 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR N +R+I + V GS L G+T L L +E++ + + Sbjct: 323 RIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P + G A R+ G ++ +A+R V+ + I + + Sbjct: 383 NFLLHYNFPPYAVGESAALRAPGRREIGHG----KLAWKAIRYVLPEKSDFPYTIRVVSE 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++DG + A + GA +AL D +K VA I+ G++ Sbjct: 439 ITESDGSSSMATVCGASLALMDT-------------GVPIKAPVAGIAMGLI 477 >gi|313204132|ref|YP_004042789.1| polyribonucleotide nucleotidyltransferase [Paludibacter propionicigenes WB4] gi|312443448|gb|ADQ79804.1| polyribonucleotide nucleotidyltransferase [Paludibacter propionicigenes WB4] Length = 713 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 11/95 (11%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTA-TLEEKVP---MWIRNTKHGWITAEYGML 66 R IS+ T +++K A+GS +V+ GDT LL T + ++ VP + + A +G Sbjct: 14 RTISIETGKLAKQADGSVMVRMGDTMLLATVCSAQDAVPGTDFMPLSVDYKEKYAAFGRF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV 101 P G +KRE GR + R++ RALR + Sbjct: 74 P---GGFLKRE---GRASDYEILVSRLVDRALRPL 102 >gi|94497007|ref|ZP_01303581.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58] gi|94423683|gb|EAT08710.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58] Length = 778 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 18/228 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR Q+R I GS L G+T + T TL E++ + + Sbjct: 323 RIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLTGLHYE 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL V+ I + D Sbjct: 383 NFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHPVLPSKDEFPYTIRVLSD 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D ++ + + +L+G A+ I D+ Sbjct: 439 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDYAV---------ISDI 489 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T++G I +Q + A +Q+ F L AK+ Sbjct: 490 LGDEDHLGDMDFKVAGTENG-ITTMQMDIKVAGITQEIFEVALRQAKE 536 >gi|57239082|ref|YP_180218.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium str. Welgevonden] gi|58579025|ref|YP_197237.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium str. Welgevonden] gi|81352951|sp|Q5HBH6|PNP_EHRRW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|57161161|emb|CAH58074.1| polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|58417651|emb|CAI26855.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 789 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR N +R+I + V GS L G+T L L +E++ + + Sbjct: 323 RIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P + G A R+ G ++ +A+R V+ + I + + Sbjct: 383 NFLLHYNFPPYAVGESAALRAPGRREIGHG----KLAWKAIRYVLPEKSDFPYTIRVVSE 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++DG + A + GA +AL D +K VA I+ G++ Sbjct: 439 ITESDGSSSMATVCGASLALMDT-------------GVPIKAPVAGIAMGLI 477 >gi|153951894|ref|YP_001397657.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. doylei 269.97] gi|187610250|sp|A7H2C7|PNP_CAMJD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152939340|gb|ABS44081.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. doylei 269.97] Length = 718 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R IS+ + A GSCL G T L ATL E M T+ I Sbjct: 335 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 394 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + G V + G R + RAL VD + +++ +++ Sbjct: 395 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 452 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 453 ESNGSSSMATVCGGSLAL 470 >gi|222475095|ref|YP_002563511.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str. Florida] gi|257096679|sp|B9KIE3|PNP_ANAMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222419232|gb|ACM49255.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str. Florida] Length = 805 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +Q+R I + + + GS L GDT L L +E+V + Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115 Y + G EA + R GR +EI ++ RA+ V+ A I + Sbjct: 380 RFLLHYNFPSYAVG-----EAAALRPPGR-REIGHGKLAWRAIHPVLPTKADFPYTIRVV 433 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ ++DG + A + GA +AL D LK VA I+ G++ Sbjct: 434 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 474 >gi|313638085|gb|EFS03354.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL S4-171] Length = 723 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 15/125 (12%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVAL 137 + VAL Sbjct: 133 SSVAL 137 >gi|260223146|emb|CBA33418.1| Polyribonucleotide nucleotidyltransferase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 722 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58 R+ GR +R I + V GS L G+T L ATL E+ I + Sbjct: 338 RIDGRDTRTVRAIEIRNGVLPRTHGSSLFTRGETQALVIATLGTERDAQRIDALSGEYED 397 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL +V+ + + Sbjct: 398 RFMLHYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALVAVLPTKEEFPYSLRV 450 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G ++L D LK HVA I+ G++ Sbjct: 451 VSEITESNGSSSMASVCGGCLSLMDA-------------GVPLKAHVAGIAMGLI 492 >gi|197117696|ref|YP_002138123.1| polynucleotide phosphorylase/polyadenylase [Geobacter bemidjiensis Bem] gi|257096691|sp|B5EI63|PNP_GEOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|197087056|gb|ACH38327.1| polyribonucleotide nucleotidyltransferase [Geobacter bemidjiensis Bem] Length = 696 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 38/221 (17%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R IS + A GS L G+T + ATL E+++ +++ Sbjct: 312 RIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G R A R+ G +R + + L D I I Sbjct: 372 KFML-HYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDF----PYTIRIVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+ +++G + A + G +++ D +K VA I+ G+ Sbjct: 427 DITESNGSSSMATVCGGSLSMMDA-------------GIPIKAPVAGIAMGL-------- 465 Query: 177 LDYGEDSTIDVDANFVMTDSGHI----VEVQGSAERATFSQ 213 + G+D I D ++ D H+ +V G+AE T Q Sbjct: 466 IKEGDDFAILSD---ILGDEDHLGDMDFKVAGTAEGVTALQ 503 >gi|56416731|ref|YP_153805.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. St. Maries] gi|81359135|sp|Q5PAY0|PNP_ANAMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56387963|gb|AAV86550.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str. St. Maries] Length = 805 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +Q+R I + + + GS L GDT L L +E+V + Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115 Y + G EA + R GR +EI ++ RA+ V+ A I + Sbjct: 380 RFLLHYNFPSYAVG-----EAAALRPPGR-REIGHGKLAWRAIHPVLPTKADFPYTIRVV 433 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ ++DG + A + GA +AL D LK VA I+ G++ Sbjct: 434 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 474 >gi|74225136|dbj|BAE38260.1| unnamed protein product [Mus musculus] Length = 783 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+G +++ GDT ++ TA + K +P+ + + A G +P N Sbjct: 62 KLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +E+ R+I R++R + Q++ C+++ DG Sbjct: 116 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA VAL LS + G V A+ GM+ G +V+ E S+ + Sbjct: 169 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234 >gi|170747372|ref|YP_001753632.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium radiotolerans JCM 2831] gi|226702663|sp|B1LZQ1|PNP_METRJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|170653894|gb|ACB22949.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium radiotolerans JCM 2831] Length = 739 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 30/234 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T L ATL +E+ + T Sbjct: 316 RIDGRDVKTVRSILSEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y P S G +GR G +R IG RA+R V+ + Sbjct: 376 RFLLHYNFPPYSVGE-------TGRMGSPG---RREIGHGKLAWRAIRPVLPPAHEFPYT 425 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 I + ++ +++G + A++ G ++L D + + +L+G A+ Sbjct: 426 IRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV------- 478 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + D+ ED D+D TD G + +Q + A +++ L AKD Sbjct: 479 --LSDILGDEDHLGDMDFKVAGTDEG-VTSLQMDIKIAGITEEIMKIALAQAKD 529 >gi|313633394|gb|EFS00232.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL N1-067] Length = 723 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 15/125 (12%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVAL 137 + VAL Sbjct: 133 SSVAL 137 >gi|254496145|ref|ZP_05109043.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii LLAP12] gi|254354632|gb|EET13269.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii LLAP12] Length = 719 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKHG 57 R+ GR +R I++ ++ + GSCL G+T + ATL E M I Sbjct: 314 RIDGRDHKTVRPIAVRTKLLERTHGSCLFTRGETQAIVVATLGNERDAQMLDGINVESKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ RAL +V+ ++ + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRALLAVLPEASAFPYVLRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A + G +AL D LK VA ++ G++ Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLI 468 >gi|289449845|ref|YP_003475189.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184392|gb|ADC90817.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 745 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 10/89 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++++A GSCL+++G+T +L+TAT ++ + + + + G +PR Sbjct: 18 TGKLAQFANGSCLIRYGNTVVLSTATASKQPRPGIDFFPLSVDYEEKMYAIGKIPRGF-- 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSV 101 +KRE GR ++ R+I R +R + Sbjct: 76 -IKRE---GRPSEKAILTSRVIDRPMRPL 100 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 33/179 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +++R +S + GS L + G T +LT TL + + N K Sbjct: 312 RVDGRGIDEIRPLSCDAGILPMVHGSGLFQRGQTQVLTICTLGPLSSAQTLDGLDNEKEK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y M STG EA R GR R IG R+L V+ Sbjct: 372 RYMHHYNMPGYSTG-----EAKPNRSPGR-----REIGHGALAERSLVPVLPSEEEFPYA 421 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I +++ ++G T ++ + +AL D +K VA ISCG+L Sbjct: 422 IRTVSEIMMSNGSTSQGSVCASTLALMDA-------------GVPIKRPVAGISCGLLV 467 >gi|163745458|ref|ZP_02152818.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex HEL-45] gi|161382276|gb|EDQ06685.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex HEL-45] Length = 711 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 30/245 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR+ +++R+I + GS L G+T L TL E+ + N K Sbjct: 318 RIDGRRTDEIRDIVAETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G V R GR R ++ RAL++V+ + I + Sbjct: 378 NFLL-HYNFPPYSVG-EVGRVGPPGR---REVGHGKLAWRALQAVLPAATDFPYTIRLVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172 ++ +++G + A++ G +++ D LK VA ++ G++ Y Sbjct: 433 EITESNGSSSMASVCGGSLSMMDA-------------GVPLKSAVAGVAMGLILEDDGSY 479 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-RIADL 230 I+ D+ ED D+D T++G I +Q + A + + L AKD RI L Sbjct: 480 AILSDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMEKALAQAKDGRIHIL 538 Query: 231 IKLQK 235 ++ K Sbjct: 539 GEMNK 543 >gi|289434612|ref|YP_003464484.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170856|emb|CBH27398.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 723 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 15/125 (12%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVAL 137 + VAL Sbjct: 133 SSVAL 137 >gi|25188204|ref|NP_082145.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor [Mus musculus] gi|71159797|sp|Q8K1R3|PNPT1_MOUSE RecName: Full=Polyribonucleotide nucleotidyltransferase 1, mitochondrial; AltName: Full=3'-5' RNA exonuclease OLD35; AltName: Full=PNPase old-35; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1; AltName: Full=Polynucleotide phosphorylase-like protein; Flags: Precursor gi|22799101|emb|CAD45436.1| polynucleotide phosphorylase-like protein [Mus musculus] gi|33585810|gb|AAH55826.1| Polyribonucleotide nucleotidyltransferase 1 [Mus musculus] gi|56208052|emb|CAI25081.1| polyribonucleotide nucleotidyltransferase 1 [Mus musculus] gi|74143624|dbj|BAE28862.1| unnamed protein product [Mus musculus] gi|148691866|gb|EDL23813.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Mus musculus] Length = 783 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+G +++ GDT ++ TA + K +P+ + + A G +P N Sbjct: 62 KLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKA---AAAGRIPT---N 115 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +E+ R+I R++R + Q++ C+++ DG Sbjct: 116 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA VAL LS + G V A+ GM+ G +V+ E S+ + Sbjct: 169 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234 >gi|315302988|ref|ZP_07873706.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL F6-596] gi|313628638|gb|EFR97053.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL F6-596] Length = 723 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 15/125 (12%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++K A G+ L+++GDT +LT A +K P+ + + + G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR R+ R+I R +R + QI + D AA+ G Sbjct: 76 FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132 Query: 133 AWVAL 137 + VAL Sbjct: 133 SSVAL 137 >gi|229592632|ref|YP_002874751.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens SBW25] gi|259534147|sp|C3K255|PNP_PSEFS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|229364498|emb|CAY52345.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens SBW25] Length = 701 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++ +++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSISAMLPAADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGQKFAILTDIL 483 >gi|74183452|dbj|BAE36595.1| unnamed protein product [Mus musculus] Length = 783 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+G +++ GDT ++ TA + K +P+ + + A G +P N Sbjct: 62 KLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKA---AAAGRIPT---N 115 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +E+ R+I R++R + Q++ C+++ DG Sbjct: 116 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA VAL LS + G V A+ GM+ G +V+ E S+ + Sbjct: 169 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234 >gi|52080276|ref|YP_079067.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis ATCC 14580] gi|52785653|ref|YP_091482.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis ATCC 14580] gi|319645944|ref|ZP_08000174.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2] gi|81385548|sp|Q65JH5|PNP_BACLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52003487|gb|AAU23429.1| polynucleotide phosphorylase (PNPase) [Bacillus licheniformis ATCC 14580] gi|52348155|gb|AAU40789.1| PnpA [Bacillus licheniformis ATCC 14580] gi|317391694|gb|EFV72491.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2] Length = 705 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 15/127 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRST 70 T +++K A G+ +V++GDT +L+TAT ++ P+ + + + G +P Sbjct: 21 TGQLAKQANGAVMVRYGDTAVLSTATASKEPKTVDFFPLTVNYEERLYAV---GKIP--- 74 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G +KRE GR ++ R+I R +R + Q++ + D + AA+ Sbjct: 75 GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMAAM 131 Query: 131 TGAWVAL 137 G+ +AL Sbjct: 132 FGSSLAL 138 >gi|157415517|ref|YP_001482773.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni 81116] gi|187610249|sp|A8FMV9|PNP_CAMJ8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157386481|gb|ABV52796.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|307748158|gb|ADN91428.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni M1] Length = 719 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R IS+ + A GSCL G T L ATL E M T+ I Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + G V + G R + RAL VD + +++ +++ Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 454 ESNGSSSMATVCGGSLAL 471 >gi|157150941|ref|YP_001449663.1| polynucleotide phosphorylase/polyadenylase [Streptococcus gordonii str. Challis substr. CH1] gi|187611296|sp|A8AV53|PNP_STRGC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157075735|gb|ABV10418.1| polyribonucleotide nucleotidyltransferase [Streptococcus gordonii str. Challis substr. CH1] Length = 728 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 98/231 (42%), Gaps = 35/231 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 G+ +AL +S + G +A + G + G I++ + ++ Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLEL 175 Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S+D L + +LI Q+++++ Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDVMLEALLKGHQAVKELIAFQEEIVA 222 >gi|70734341|ref|YP_257981.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens Pf-5] gi|123762225|sp|Q4KIF2|PNP_PSEF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|68348640|gb|AAY96246.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens Pf-5] Length = 703 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 318 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 378 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 430 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G A+ +L Sbjct: 431 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 485 >gi|304310511|ref|YP_003810109.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium HdN1] gi|301796244|emb|CBL44452.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium HdN1] Length = 701 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 25/174 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ GS L G+T + TATL + + ++ + Sbjct: 316 RIDGRDNKTVRPISIEVGNLARTHGSALFTRGETQAIVTATLGSMRDSQTVDYLEGARSE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115 Y P G G+ G + +EI R+ R +++V+ ++ I + Sbjct: 376 PFMLHYNFPPFCVGE------TGGQLGPKRREIGHGRLARRGIQAVLPENSAFPYAIRVV 429 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G+ +AL D LK VA I+ G++ Sbjct: 430 SEITESNGSSSMASVCGSSLALMDA-------------GVPLKAPVAGIAMGLV 470 >gi|12835817|dbj|BAB23374.1| unnamed protein product [Mus musculus] Length = 540 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+G +++ GDT ++ TA + K +P+ + + A G +P N Sbjct: 62 KLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKA---AAAGRIPT---N 115 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +E+ R+I R++R + Q++ C+++ DG Sbjct: 116 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA VAL LS + G V A+ GM+ G +V+ E S+ + Sbjct: 169 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234 >gi|317052392|ref|YP_004113508.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum indicum S5] gi|316947476|gb|ADU66952.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum indicum S5] Length = 722 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 12/174 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR N++R IS+ GS L G+T + TL +E+ + + Sbjct: 316 RVDGRSLNEVRPISIAPSFLPRTHGSVLFTRGETQAIVVTTLGTVSDEQFVENLEGERRS 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIIID 115 Y P G EA R GR +EI + RA+ +V+ I I Sbjct: 376 NYMFHYNFPPYCVG-----EAGFLRSPGR-REIGHGALAKRAIEAVLPQGEDFPYTIRIV 429 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D ++ + + +L+G A+ +L Sbjct: 430 SEITESNGSSSMASVCGASLALMDAGVPIKGAVSGIAMGLILEGDRFAVLTDIL 483 >gi|255264847|ref|ZP_05344189.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62] gi|255107182|gb|EET49856.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62] Length = 711 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 58/248 (23%), Positives = 106/248 (42%), Gaps = 28/248 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+ +++R+I + GS L G+T L ATL +E++ ++ Sbjct: 318 RIDGRKTDEVRDIVCETGLLPRTHGSALFTRGETQGLVVATLGTGDDEQMIDALQGMYRS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL++V+ + I + + Sbjct: 378 NFMLHYNFPPYSVG-EVGRFGPPGR---REIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173 + +++G + A++ G +++ D LK VA ++ G++ Y Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLVLEDDGDYA 480 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-RIADLI 231 I+ D+ ED D+D T++G I +Q + A + D L AK+ R+ L Sbjct: 481 ILTDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPDIMEKALAQAKEGRLHILG 539 Query: 232 KLQKDVIS 239 ++ K + S Sbjct: 540 EMNKSISS 547 >gi|332976716|gb|EGK13552.1| polyribonucleotide nucleotidyltransferase [Psychrobacter sp. 1501(2011)] Length = 702 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 19/171 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + +R + + V Y GS L G+T L T TL + + ++ G I Sbjct: 320 RIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNLIDSLAGTIQD 379 Query: 62 EYGM---LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + + P + RE V R R R+ R +++++ S I + ++ Sbjct: 380 HFMLHYNFPHFSVGETGREGVPKR---REIGHGRLARRGVQAMLPDSDRFPYVIRVVSEI 436 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +++G + A++ GA +AL D M K VA I+ G++ Sbjct: 437 TESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLV 474 >gi|325686903|gb|EGD28928.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK72] Length = 733 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 35/231 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 G+ +AL +S + G +A + G + G I++ + ++ Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGEFIINPRKEQKEVSLLEL 175 Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T D+ ++VE G+ E S+D L + + +LI Q+++++ Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDIMLEALLKGHEAVKELIAFQEEIVA 222 >gi|255994504|ref|ZP_05427639.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum ATCC 49989] gi|255993217|gb|EEU03306.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum ATCC 49989] Length = 696 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 73/179 (40%), Gaps = 33/179 (18%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R R+ ++R I + A GS L K G+T +L+ ATL + +V I Sbjct: 315 IRPDDRKRTEVRPIWCDTSILPRAHGSGLFKRGETQVLSAATLGGIGDAQVIDGIGVETE 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR-ALRSVVDLSALGSRQ---- 111 Y P S G EA R GR R IG AL L L S++ Sbjct: 375 KRYMHHYNFPPYSVG-----EARPIRSPGR-----REIGHGALAERALLPVLPSKEDFPY 424 Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 I + DV+ ++G T A++ G+ +AL D +K VA I+ G++ Sbjct: 425 TIRVVSDVLSSNGSTSQASVCGSCMALMDA-------------GVPIKAPVAGIAMGLI 470 >gi|224060110|ref|XP_002300042.1| predicted protein [Populus trichocarpa] gi|222847300|gb|EEE84847.1| predicted protein [Populus trichocarpa] Length = 961 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 24/185 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR+ +++R + GS L GDT +L T TL ++ G T Sbjct: 366 FRVDGRRLDEVRPLYCEAGYLPNLHGSSLFSRGDTQVLCTVTLGAPRDAQRLDSLVGPPT 425 Query: 61 AE----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + I+ Sbjct: 426 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEDDFPYTVRINS 481 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ +DG T A + G VA+ D L+ HVA +S G++ VD Sbjct: 482 EVMASDGSTSMATVCGGSVAMMDA-------------GIPLQEHVAGVSVGLVSE---VD 525 Query: 177 LDYGE 181 GE Sbjct: 526 PSTGE 530 >gi|160932224|ref|ZP_02079615.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753] gi|156868826|gb|EDO62198.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753] Length = 733 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 33/178 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +QMR ++ + GS + G T ++T ATL ++++ I + Sbjct: 315 RVDGRAMDQMRPLAAEVGLLPRVHGSGMFTRGQTQVITAATLGPVSDQQLLDGIDGEEFK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 +Y S G E R GR R IG RAL V+ Sbjct: 375 RYMHQYNFPSYSVG-----ETRPSRGPGR-----REIGHGALAERALLPVIPPVEEFPYA 424 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +V+ ++G T A+I G+ +AL D +K VA ISCG++ Sbjct: 425 YRLVSEVVSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLI 469 >gi|119510054|ref|ZP_01629194.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena CCY9414] gi|119465241|gb|EAW46138.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena CCY9414] Length = 718 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 35/228 (15%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73 ++ A GS L++ GDT +L TAT + +P+ + + + R G Sbjct: 22 LAPQAGGSVLIESGDTSVLVTATRSKGREGIDFLPLTVDYEERLYAAG------RIPGGI 75 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++RE GR ++ R+I R +R + QII + A+TGA Sbjct: 76 MRRE---GRPPEKTILTSRLIDRPMRPLFPTWLRDDLQIIAFTLSMDELVPPDVLAVTGA 132 Query: 134 WVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 +A ++Q+ G +AA+ G++ I++ Y E D+D + Sbjct: 133 SIAT--------------LMAQIPFNGPMAAVRVGLVGDDFIINPTYAETENGDLD--LI 176 Query: 193 MTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + S H ++ V+ A + + ++ + + DLI+ Q+D+++ Sbjct: 177 VAGSPHGVIMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIQAQQDLLA 222 >gi|330807487|ref|YP_004351949.1| polyribonucleotide nucleotidyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375595|gb|AEA66945.1| Putative polyribonucleotide nucleotidyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 701 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483 >gi|225018458|ref|ZP_03707650.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum DSM 5476] gi|224948767|gb|EEG29976.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum DSM 5476] Length = 722 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 26/195 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPRSTGN 72 T + S+ A GSC V++G+T ++ T+ K V + + + G +P G+ Sbjct: 40 TGKTSELANGSCWVRYGETVVMANVTMSAKPREGVDFFPLSVDYEEKLYAVGKIP---GS 96 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE+ R R+ R+I R +R + ++ D A+T Sbjct: 97 FLKRES---RPSERAILTSRVIDRPIRPLFPKDMRNDVSVVATVLATDVDNSPEVVAMTA 153 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191 +A+ +S + G VA++S G++ G +++ + E + D+D Sbjct: 154 VAIAI--------------SISDIPWNGPVASVSVGLVDGKFVLNPNIEERAKSDLDLT- 198 Query: 192 VMTDSGHIVEVQGSA 206 V + IV ++ A Sbjct: 199 VASSGEKIVMIEAGA 213 >gi|224825869|ref|ZP_03698973.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum 2002] gi|224602093|gb|EEG08272.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum 2002] Length = 719 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I++ V GS L G+T + TL + I + G T Sbjct: 316 RIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVTTLGTQRDEQIIDALAGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P STG +GR G + +EI R+ RAL V+ + + + Sbjct: 376 RFMLHYNFPPYSTGE-------AGRMGPPKRREIGHGRLAKRALAQVLPSADEFGYSMRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 ++ +++G + A++ G +AL + LK HVA I+ G++ Sbjct: 429 VSEITESNGSSSMASVCGGCLALLNA-------------GVPLKAHVAGIAMGLIL 471 >gi|255567379|ref|XP_002524669.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] gi|223536030|gb|EEF37688.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] Length = 958 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 24/185 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR+ +++R + GS L GDT +L T TL + G T Sbjct: 365 FRVDGRRLDEVRPLFCKAGPLPILHGSSLFNRGDTQVLCTVTLGAPGDAQRLESLVGPPT 424 Query: 61 A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + I+ Sbjct: 425 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEDDFPYTVRINS 480 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ +DG T A + G +AL D L+ HVA +S G++ VD Sbjct: 481 EVMASDGSTSMATVCGGSMALMDA-------------GIPLREHVAGVSVGLVSE---VD 524 Query: 177 LDYGE 181 GE Sbjct: 525 PSTGE 529 >gi|212703635|ref|ZP_03311763.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098] gi|212672930|gb|EEB33413.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098] Length = 750 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 9/144 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +R I + V A GS + + G+T L TL + G +T Sbjct: 322 VRIDGRDTKTVRPIQIQTSVLPRAHGSAIFRRGETKSLVVTTLGSSTDEQRMGSLSGDVT 381 Query: 61 AE----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G VK VS R+ G + ++LR V+ A + + Sbjct: 382 KRFMLHYNFPPFSVGE-VKPVRVSRREIGHGA----LAEKSLRPVMPADADFPFTVRVVS 436 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 + ++++G + AA+ G ++L D Sbjct: 437 ETVESNGSSSMAAVCGGCLSLMDA 460 >gi|74184409|dbj|BAE25732.1| unnamed protein product [Mus musculus] Length = 783 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+G +++ GDT ++ TA + K +P+ + + A G +P N Sbjct: 62 KLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +E+ R+I R++R + Q++ C+++ DG Sbjct: 116 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA VAL LS + G V A+ GM+ G +V+ E S+ + Sbjct: 169 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234 >gi|57238127|ref|YP_179377.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni RM1221] gi|81353435|sp|Q5HTK8|PNP_CAMJR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|57166931|gb|AAW35710.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni RM1221] gi|315058687|gb|ADT73016.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni S3] Length = 719 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R IS+ + A GSCL G T L ATL E M T+ I Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + G V + G R + RAL VD + +++ +++ Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 454 ESNGSSSMATVCGGSLAL 471 >gi|330958045|gb|EGH58305.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 701 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|237798567|ref|ZP_04587028.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021420|gb|EGI01477.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 701 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] gi|257096715|sp|B5YHN2|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 710 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 18/149 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R GR+ +++R I+ + GS L G+T L TL E+KV ++ Sbjct: 319 IRADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLGTSEDEQKV-----DSL 373 Query: 56 HGWI----TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 G I Y LP S G A R+ G + RAL V+ Sbjct: 374 EGEIFKTFMLHYNFLPFSVGEVKPLRAPGRREIGHGY----LAERALSYVIPSKDEFPYT 429 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC 140 I + D+++++G + A + GA ++L D Sbjct: 430 IRVVSDILESNGSSSMATVCGATLSLMDA 458 >gi|307293331|ref|ZP_07573177.1| polyribonucleotide nucleotidyltransferase [Sphingobium chlorophenolicum L-1] gi|306881397|gb|EFN12613.1| polyribonucleotide nucleotidyltransferase [Sphingobium chlorophenolicum L-1] Length = 781 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 18/228 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR Q+R I GS L G+T + T TL E++ + + Sbjct: 316 RIDGRTTTQIRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTKDAEQMIDGLNGVYYE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL V+ I + D Sbjct: 376 NFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHPVLPSKDEFPYTIRVLSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKNFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D T++G I +Q + A +Q+ F L AK+ Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITTMQMDIKVAGITQEIFEVALRQAKE 529 >gi|114765823|ref|ZP_01444916.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis HTCC2601] gi|114541822|gb|EAU44859.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. HTCC2601] Length = 463 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 27/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R I V GS L G+T L TL I + HG + Sbjct: 68 RIDGRALDQVRPIQSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 127 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL++V+ I + + Sbjct: 128 NFLLHYNFPPYSVGE-VGRVGSPGR---REIGHGKLAWRALQAVLPAPTDFPYTIRLVSE 183 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173 + +++G + A++ G +++ D LK VA ++ G++ Y Sbjct: 184 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLVLEDDGEYA 230 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 I+ D+ ED D+D T++G I +Q + A + + L AKD Sbjct: 231 ILTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKKALAQAKD 282 >gi|332359947|gb|EGJ37761.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1056] Length = 733 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVAL 137 G+ +AL Sbjct: 130 FGSSLAL 136 >gi|332359275|gb|EGJ37096.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK49] Length = 733 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVAL 137 G+ +AL Sbjct: 130 FGSSLAL 136 >gi|148691867|gb|EDL23814.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Mus musculus] Length = 551 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72 +++++A+G +++ GDT ++ TA + K +P+ + + A G +P N Sbjct: 66 KLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKA---AAAGRIPT---N 119 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128 ++RE G +E+ R+I R++R + Q++ C+++ DG Sbjct: 120 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 172 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA VAL LS + G V A+ GM+ G +V+ E S+ + Sbjct: 173 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 218 Query: 188 DANFVMTDSGHIVEVQGSAE 207 + IV ++ SAE Sbjct: 219 NLVVAGAPKSQIVMLEASAE 238 >gi|66047403|ref|YP_237244.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. syringae B728a] gi|75500706|sp|Q4ZNR6|PNP_PSEU2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|63258110|gb|AAY39206.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 701 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|312129691|ref|YP_003997031.1| polyribonucleotide nucleotidyltransferase [Leadbetterella byssophila DSM 17132] gi|311906237|gb|ADQ16678.1| polyribonucleotide nucleotidyltransferase [Leadbetterella byssophila DSM 17132] Length = 718 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 RL GR+ ++R I++ A GS L G+T L+T TL K+ I + + Sbjct: 317 RLDGRKLTEIRPITVEVDYLPSAHGSALFTRGETQSLSTTTLGTKLDEQIVDLPMVKGYS 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y STG V R+ G Q R+L V+ I + D Sbjct: 377 KFYLHYNFPGFSTGEVRPNRGVGRREIGHGNLAQ----RSLERVMPPEEENPYTIRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + ++L D Sbjct: 433 ILESNGSSSMATVCAGCLSLMDA 455 >gi|71734516|ref|YP_276307.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482257|ref|ZP_05636298.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627537|ref|ZP_06460491.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646965|ref|ZP_06478308.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aesculi str. 2250] gi|123747552|sp|Q48E81|PNP_PSE14 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71555069|gb|AAZ34280.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|330868250|gb|EGH02959.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330888654|gb|EGH21315.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. mori str. 301020] gi|330987059|gb|EGH85162.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011503|gb|EGH91559.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 701 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|332365583|gb|EGJ43343.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1059] Length = 733 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVAL 137 G+ +AL Sbjct: 130 FGSSLAL 136 >gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum DSM 5159] gi|257096714|sp|B9KYR9|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum DSM 5159] Length = 790 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 12/144 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKV--PMWIRNTK 55 R GR+ +++REI + + GS L G T +LT TL EE+ + I TK Sbjct: 325 RPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVCTLGTKEEEQFLDSLGIEETK 384 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG + S R G + RAL +V+ + + Sbjct: 385 R--YMHHYNFPPFSTGEIRRLRGPSRRDIGHGA----LAERALLAVLPSEDEFPYTMRLV 438 Query: 116 CDVIQADGGTRTAAITGAWVALHD 139 +V+ ++G T A++ G+ +AL D Sbjct: 439 SEVLSSNGSTSMASVCGSSLALMD 462 >gi|320322524|gb|EFW78617.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. glycinea str. B076] gi|320330007|gb|EFW85994.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. glycinea str. race 4] gi|330875199|gb|EGH09348.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 701 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|253701574|ref|YP_003022763.1| polynucleotide phosphorylase/polyadenylase [Geobacter sp. M21] gi|259534126|sp|C6E2P5|PNP_GEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|251776424|gb|ACT19005.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. M21] Length = 696 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 38/221 (17%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R IS + A GS L G+T + ATL E+++ +++ Sbjct: 312 RIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G R A R+ G +R + + L D I I Sbjct: 372 KFML-HYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDF----PYTIRIVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+ +++G + A + G +++ D +K VA I+ G+ Sbjct: 427 DITESNGSSSMATVCGGSLSMMDA-------------GIPIKAPVAGIAMGL-------- 465 Query: 177 LDYGEDSTIDVDANFVMTDSGHI----VEVQGSAERATFSQ 213 + G+D I D ++ D H+ +V G+AE T Q Sbjct: 466 IKEGDDFAILSD---ILGDEDHLGDMDFKVAGTAEGVTALQ 503 >gi|86152881|ref|ZP_01071086.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843766|gb|EAQ60976.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] Length = 719 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R IS+ + A GSCL G T L ATL E M T+ I Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + G V + G R + RAL VD + +++ +++ Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYIIRLV--SEIL 453 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 454 ESNGSSSMATVCGGSLAL 471 >gi|78222801|ref|YP_384548.1| polynucleotide phosphorylase/polyadenylase [Geobacter metallireducens GS-15] gi|123729281|sp|Q39VA1|PNP_GEOMG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78194056|gb|ABB31823.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Geobacter metallireducens GS-15] Length = 697 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 10/144 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I+ + GS L G+T L ATL E+++ ++ Sbjct: 313 RIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVAATLGTSSDEQRIDSLYGESRK 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G R A R+ G +R + R L D I I Sbjct: 373 RFML-HYNFPPFSVGETSFRLAPGRREIGHGYLAERALERVLPKHDDF----PYTIRIVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A++ G +++ D Sbjct: 428 DILESNGSSSMASVCGGALSMMDA 451 >gi|298488460|ref|ZP_07006491.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157085|gb|EFH98174.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 701 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|330969656|gb|EGH69722.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 701 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|327468357|gb|EGF13842.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK330] Length = 733 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVAL 137 G+ +AL Sbjct: 130 FGSSLAL 136 >gi|324996021|gb|EGC27932.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK678] gi|327460682|gb|EGF07017.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1] gi|327472404|gb|EGF17835.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK408] gi|327488757|gb|EGF20556.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1058] Length = 733 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70 T +V+K A GS +V++G++ +LT AT+ +K+ P+ + + + +Y Sbjct: 19 TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 73 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129 Query: 131 TGAWVAL 137 G+ +AL Sbjct: 130 FGSSLAL 136 >gi|313608979|gb|EFR84725.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL F2-208] Length = 184 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71 +++K A G+ L+++GDT +LT A +K R +T Y G +P G Sbjct: 22 QLAKQASGAALIRYGDTVVLTAAVGSKKP----RPGDFFPLTVNYEEKMYSVGKVP---G 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE GR R+ R+I R +R + QI + D AA+ Sbjct: 75 GFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAML 131 Query: 132 GAWVAL 137 G+ VAL Sbjct: 132 GSSVAL 137 >gi|302185436|ref|ZP_07262109.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. syringae 642] Length = 701 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|121612552|ref|YP_001000929.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni 81-176] gi|167005840|ref|ZP_02271598.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni 81-176] gi|187610251|sp|A1W0N8|PNP_CAMJJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|87249933|gb|EAQ72892.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 81-176] Length = 719 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R IS+ + A GSCL G T L ATL E M T+ I Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + G V + G R + RAL VD + +++ +++ Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYIIRLV--SEIL 453 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 454 ESNGSSSMATVCGGSLAL 471 >gi|28871621|ref|NP_794240.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|213966643|ref|ZP_03394794.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato T1] gi|301383153|ref|ZP_07231571.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tomato Max13] gi|302061771|ref|ZP_07253312.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tomato K40] gi|302133785|ref|ZP_07259775.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|81729685|sp|Q87WQ8|PNP_PSESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|28854873|gb|AAO57935.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|213928493|gb|EEB62037.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato T1] gi|330963979|gb|EGH64239.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016652|gb|EGH96708.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 701 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|269958853|ref|YP_003328641.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str. Israel] gi|269848683|gb|ACZ49327.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str. Israel] Length = 802 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +Q+R I + + + GS L GDT L L +E+V + Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115 Y + G EA + R GR +EI ++ RA+ V+ A I + Sbjct: 380 RFLLHYNFPSYAVG-----EAAALRPPGR-REIGHGKLAWRAIHPVLPTKADFPYTIRVV 433 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ ++DG + A + GA +AL D LK VA I+ G++ Sbjct: 434 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 474 >gi|313892760|ref|ZP_07826341.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral taxon 158 str. F0412] gi|313442691|gb|EFR61102.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral taxon 158 str. F0412] Length = 689 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 35/229 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T ++K A G+ +V +GDT +L TAT ++ ++ +T +Y G LP Sbjct: 17 TGELAKQAGGAVMVGYGDTRVLVTATGSKEA----KDIDFFPLTVDYEEKMYAVGRLP-- 70 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KREA R + R+I R +R + D ++ + D Sbjct: 71 -GGFIKREA---RPPETAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAVCG 126 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + GA AL +S V G +A + G + G +V+ + D++ Sbjct: 127 MIGASAAL--------------SISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLN 172 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 T I+ V+G AE +D ++ A + I ++ Q+D+ Sbjct: 173 IVVAGTKDA-ILMVEGGAEE--VPEDIILEVIMAAHEEIKKIVAFQEDM 218 >gi|260578909|ref|ZP_05846813.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258602961|gb|EEW16234.1| guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 764 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 23/176 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 R+ GR +R++ + ++ A GS L + G+T +L TL E+++ T Sbjct: 377 FRIDGRDSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETS 436 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P STG + + R+ G +R + + S D RQ+ Sbjct: 437 KRYIH-HYNFPPYSTGETGRVGSPKRREIGHGALAERALTPVIPSRDDFP-YTIRQV--- 491 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + ++G T ++ + ++L++ LK VA I+ G++ G Sbjct: 492 SEALSSNGSTSMGSVCASTLSLYNA-------------GVPLKAPVAGIAMGLVTG 534 >gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa] gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa] Length = 243 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 79/216 (36%), Gaps = 29/216 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +S R V A GS GDT +L + K G Sbjct: 5 RDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAA----------VYGPKAGTKKN 54 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E P V + +G+ G +E + ++ R L+S+ L+ + I V+ Sbjct: 55 EN---PEKACIEVIWKPKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVND 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDY 179 DG AI A AL D M+ H+A C L GY I+D Sbjct: 112 DGALLVCAINAACAALVDAGIPMK--------------HLAVAICCCLAEGGYVILDPTK 157 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215 E+ + V +S V +GS+ +H Sbjct: 158 LEEQKMRGFTYLVFPNSVVSVLPEGSSHVEGEPMEH 193 >gi|68536209|ref|YP_250914.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium jeikeium K411] gi|123650906|sp|Q4JV61|PNP_CORJK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|68263808|emb|CAI37296.1| polyribonucleotide nucleotidyltransferase [Corynebacterium jeikeium K411] Length = 764 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 23/176 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 R+ GR +R++ + ++ A GS L + G+T +L TL E+++ T Sbjct: 377 FRIDGRDSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETS 436 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P STG + + R+ G +R + + S D RQ+ Sbjct: 437 KRYIH-HYNFPPYSTGETGRVGSPKRREIGHGALAERALTPVIPSRDDFP-YTIRQV--- 491 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + ++G T ++ + ++L++ LK VA I+ G++ G Sbjct: 492 SEALSSNGSTSMGSVCASTLSLYNA-------------GVPLKAPVAGIAMGLVTG 534 >gi|163739819|ref|ZP_02147226.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter gallaeciensis BS107] gi|161386853|gb|EDQ11215.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter gallaeciensis BS107] Length = 712 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 29/234 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I + GS L G+T L TL E+ + N K Sbjct: 318 RIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G V R GR R ++ RAL++V+ I + Sbjct: 378 NFLL-HYNFPPYSVG-EVGRVGSPGR---REIGHGKLAWRALQAVLPAPTDFPYTIRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172 ++ +++G + A++ G +++ D LK VA ++ G++ Y Sbjct: 433 EITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLILEDDGSY 479 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 I+ D+ ED D+D TD G I +Q + A + + L+ AKD Sbjct: 480 AILSDILGDEDHLGDMDFKVAGTDKG-ITSLQMDIKVAGITPEIMEKALDQAKD 532 >gi|330895301|gb|EGH27639.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 701 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|317121863|ref|YP_004101866.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter marianensis DSM 12885] gi|315591843|gb|ADU51139.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter marianensis DSM 12885] Length = 752 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 9/145 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55 +R GR+ +++R I + + A GS L + G T +LT A+L + +T + Sbjct: 320 IRPDGRRPDEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQIEE 379 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG A S R+ G + RAL V+ I + Sbjct: 380 FKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGA----LAERALVPVLPDELEFPYTIRLV 435 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 +V+ ++G T A+ G+ +AL D Sbjct: 436 SEVLSSNGSTSMASTCGSTLALMDA 460 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 10/123 (8%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWITAEY--GMLPRSTGNRV 74 ++++ A GS LV++GDT +L TAT ++ I + W Y G +P G+ Sbjct: 29 QLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYAAGRIP---GSFF 85 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 +RE G+ R+ R+ R LR + QII+ D A I GA Sbjct: 86 RRE---GKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPEIAGIIGAS 142 Query: 135 VAL 137 VAL Sbjct: 143 VAL 145 >gi|313901841|ref|ZP_07835262.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter subterraneus DSM 13965] gi|313467884|gb|EFR63377.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter subterraneus DSM 13965] Length = 762 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 9/145 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55 +R GR+ ++R I + + A GS L + G T +LT A+L + +T + Sbjct: 323 IRPDGRRPAEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQIEE 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG A S R+ G +R + L +D I + Sbjct: 383 FKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGALAERALVPVLPDELDFPY----TIRLV 438 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 +V+ ++G T A+ G+ +AL D Sbjct: 439 SEVLSSNGSTSMASTCGSTLALMDA 463 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 23/157 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWITAEY--GMLPRSTGNRV 74 ++++ A GS LV++GDT +L TAT E + + + W Y G +P G+ Sbjct: 32 QLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYAAGRIP---GSFF 88 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 +RE G+ R+ R+ R LR + QII+ D A I GA Sbjct: 89 RRE---GKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPEIAGIIGAS 145 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 VAL + D G V A+ G+L G Sbjct: 146 VAL-----GISDIP--------WNGPVGAVEVGLLDG 169 >gi|330877224|gb|EGH11373.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 630 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 245 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 304 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 305 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 357 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 358 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 412 >gi|163744086|ref|ZP_02151452.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter gallaeciensis 2.10] gi|161382633|gb|EDQ07036.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter gallaeciensis 2.10] Length = 704 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 29/234 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I + GS L G+T L TL E+ + N K Sbjct: 310 RIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G V R GR R ++ RAL++V+ I + Sbjct: 370 NFLL-HYNFPPYSVG-EVGRVGSPGR---REIGHGKLAWRALQAVLPAPTDFPYTIRVVS 424 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172 ++ +++G + A++ G +++ D LK VA ++ G++ Y Sbjct: 425 EITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLILEDDGSY 471 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 I+ D+ ED D+D TD G I +Q + A + + L+ AKD Sbjct: 472 AILSDILGDEDHLGDMDFKVAGTDKG-ITSLQMDIKVAGITPEIMEKALDQAKD 524 >gi|6321634|ref|NP_011711.1| Ski6p [Saccharomyces cerevisiae S288c] gi|1176073|sp|P46948|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName: Full=Extracellular mutant protein 20; AltName: Full=Ribosomal RNA-processing protein 41; AltName: Full=Superkiller protein 6 gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae] gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae] gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae] gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789] gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291] gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118] gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c] gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB] gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796] gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13] gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23] gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3] Length = 246 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 26/191 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-----NT 54 +RL GR+ N++R + +A +GS ++ G+ ++T K P R +T Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLV----KGPKEPRLKSQMDT 67 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + + S + +R S + R EIQ + R V L+ I I Sbjct: 68 SKALLNVSVNITKFS---KFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDI 124 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 + V++ DGG + I G +AL D M D +++ IS G+ P+ Sbjct: 125 EIHVLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPL 171 Query: 175 VDLDYGEDSTI 185 +D + E++ + Sbjct: 172 LDTNSLEENAM 182 >gi|330937951|gb|EGH41738.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. pisi str. 1704B] Length = 701 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483 >gi|301063439|ref|ZP_07203971.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium NaphS2] gi|300442378|gb|EFK06611.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium NaphS2] Length = 697 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 9/126 (7%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T R++K A GS +V G+T +L TA + E + ++ ++ G +P GN Sbjct: 17 TGRIAKQANGSVVVTSGETVVLVTAVATDDVREGIDFLPLTVEYQEMSYAGGQIP---GN 73 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +R+ GR G + I R+I R LR + + Q+I + A+ G Sbjct: 74 FFRRDM--GRPGEKETLISRLIDRPLRPLFPDNYHYETQVIATVLSTDKENEADMLAMLG 131 Query: 133 AWVALH 138 A AL Sbjct: 132 ASAALE 137 >gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus HB27] gi|75424073|sp|Q9ZAE1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81405907|sp|Q72JJ8|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus] gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27] Length = 713 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKV--PMWIRNTK 55 R GR +R I + V A GS + G+T +L T TL +E++ + I T+ Sbjct: 327 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDDLGIDETE 386 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P STG + VS R+ G + RAL++V+ I + Sbjct: 387 KFLV--HYNFPPFSTGEVRRLRGVSRREVGHGN----LAKRALKAVMPKEEDFPYTIRVV 440 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 DV++++G + A + +AL D Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDA 465 >gi|332157778|ref|YP_004423057.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2] gi|331033241|gb|AEC51053.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2] Length = 274 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 18/132 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHGWI 59 R+ R R IS+ + + AEGS LVK G+T +L TL E P G + Sbjct: 24 RIDDRGFEDYRPISIEVGIIEKAEGSALVKIGNTQVLVGIKTTLGEPFP---DTPNMGVM 80 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--------VVDLSALGSRQ 111 T ++P ++ G R+ E+ R+I R +R +V + R Sbjct: 81 TTNVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESRALNLEKMVIVPGKIVRV 135 Query: 112 IIIDCDVIQADG 123 + ID V+ DG Sbjct: 136 VFIDVHVLDHDG 147 >gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae RM11-1a] Length = 246 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 26/191 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-----NT 54 +RL GR+ N++R + +A +GS ++ G+ ++T K P R +T Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLV----KGPKEPRLKSQMDT 67 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + + S + +R S + R EIQ + R V L+ I I Sbjct: 68 SKALLNVSVNITKFS---KFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDI 124 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 + V++ DGG + I G +AL D M D +++ IS G+ P+ Sbjct: 125 EIHVLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPL 171 Query: 175 VDLDYGEDSTI 185 +D + E++ + Sbjct: 172 LDTNSLEENAM 182 >gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease Length = 246 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 26/191 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-----NT 54 +RL GR+ N++R + +A +GS ++ G+ ++T K P R +T Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLV----KGPKEPRLKSQMDT 67 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + + + ++ +R S + R EIQ + R V L+ I I Sbjct: 68 SKALLNVSVNI---NKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDI 124 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 + V++ DGG + I G +AL D M D +++ IS G+ P+ Sbjct: 125 EIHVLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPL 171 Query: 175 VDLDYGEDSTI 185 +D + E++ + Sbjct: 172 LDTNSLEENAM 182 >gi|311747141|ref|ZP_07720926.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1] gi|126578849|gb|EAZ83013.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1] Length = 712 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58 RL GR+ N++R I A GS + G+T LTT TL K+ + + T G+ Sbjct: 319 RLDGRKLNEVRPIWSVVDYLPSAHGSAVFTRGETQSLTTCTLGTKMDEMMVDGATISGYN 378 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y STG R+ G + RAL+ V+ + I I D Sbjct: 379 KFYLHYNFPGFSTGEVKPNRGPGRREVGHGN----LAMRALKKVLPPAEENPYTIRIVSD 434 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +A+ D Sbjct: 435 ILESNGSSSMATVCAGSLAMMDA 457 >gi|71649471|ref|XP_813459.1| exosome complex exonuclease RRP41A [Trypanosoma cruzi strain CL Brener] gi|70878342|gb|EAN91608.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi] Length = 195 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 13/151 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57 +RL GR+ + R ++L +G C V G L T P + N +K+ Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSG----LATVCASVYGPREVTNRLESKYN 68 Query: 58 --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 IT E + + R + R+ S+E+ + RSVV LS + QI I Sbjct: 69 ECIITCEVAIAAFAGEKRRAPQ----RRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHIC 124 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMED 146 +V++ DG + A I A +AL D M D Sbjct: 125 VEVLRQDGSDKAACINAACLALVDASVAMRD 155 >gi|295698477|ref|YP_003603132.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia pediculicola USDA] gi|291157180|gb|ADD79625.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia pediculicola USDA] Length = 705 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 21/173 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R+ GR+ N++R+I V GS L G+T L TL + IR+ K Sbjct: 319 IRIDGRKLNEIRKIDCRVGVLSRTHGSSLFTRGETQTLVIVTLGNERDAQIRDEIVGEKL 378 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y LP S G R+ G ++ R + +V+ + S I + Sbjct: 379 DHFILHYNFLPYSVGEIGLVGVPKRREIGHGN----LVKRGMIAVMPNFSNFSYTIRVVS 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +VI+++G + A+ G +A+ D +K +A IS G++ Sbjct: 435 EVIESNGSSSMASACGTSLAMMDA-------------GIPIKSAIAGISIGLI 474 >gi|217970113|ref|YP_002355347.1| polynucleotide phosphorylase/polyadenylase [Thauera sp. MZ1T] gi|217507440|gb|ACK54451.1| Polyribonucleotide nucleotidyltransferase [Thauera sp. MZ1T] Length = 699 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ I Sbjct: 316 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIAGEYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + R+ G R+ R+L +++ S + + + Sbjct: 376 RFLLHYNFPPFCTGETGRFGITKRREVGHG----RLAKRSLVAMLPKPEEFSYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ G +A+ D LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGGSLAMMDA-------------GVPLKNHVAGIAMGLI 470 >gi|205356272|ref|ZP_03223038.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345877|gb|EDZ32514.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CG8421] Length = 719 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R IS+ + A GSCL G T L ATL E M T+ I Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPI 395 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + G V + G R + RAL VD + +++ +++ Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 454 ESNGSSSMATVCGGSLAL 471 >gi|83595114|ref|YP_428866.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum ATCC 11170] gi|123766875|sp|Q2RMR6|PNP_RHORT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83578028|gb|ABC24579.1| 3' exoribonuclease [Rhodospirillum rubrum ATCC 11170] Length = 708 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 94/239 (39%), Gaps = 38/239 (15%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I + + A GS L G+T L T TL +E++ + Sbjct: 314 LRIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGTGQDEQIIDALEGEYR 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 Y P S G +GR G +R IG RA+ ++ Sbjct: 374 ENFMLHYNFPPYSVGE-------AGRMGSPG---RREIGHGKLAWRAIHPMMPAKDAFPY 423 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + + ++ +++G + A + G +AL D LK VA I+ G++ Sbjct: 424 TVRVVSEITESNGSSSMATVCGTSLALMDA-------------GVPLKNAVAGIAMGLIK 470 Query: 171 G---YPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + ++ D+ ED D+D T +G I +Q + + +++ LN AKD Sbjct: 471 EDERFAVLSDILGDEDHLGDMDFKVAGTANG-ITSLQMDIKITSITKEIMNVALNQAKD 528 >gi|85373534|ref|YP_457596.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter litoralis HTCC2594] gi|123409685|sp|Q2NBZ2|PNP_ERYLH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|84786617|gb|ABC62799.1| polyribonucleotide nucleotidyltransferase [Erythrobacter litoralis HTCC2594] Length = 769 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 8/162 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+ +++R I + GS L G+T + T TL E++ + + Sbjct: 320 RIDGRKTDEVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDSEQMIDGLEGLSYS 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R+ G ++ RALR V+ + I + D Sbjct: 380 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAFRALRPVLPDNEEFPYTIRVLSD 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159 + +++G + A + G +++ D ++ + + +L+G Sbjct: 436 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG 477 >gi|86150580|ref|ZP_01068803.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596155|ref|ZP_01099392.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|218562865|ref|YP_002344644.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|123042773|sp|Q0P903|PNP_CAMJE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|85838931|gb|EAQ56197.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190996|gb|EAQ94968.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|112360571|emb|CAL35368.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926478|gb|ADC28830.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni IA3902] gi|315927122|gb|EFV06473.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929391|gb|EFV08594.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 719 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R IS+ + A GSCL G T L ATL E M T+ I Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPI 395 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + G V + G R + RAL VD + +++ +++ Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 454 ESNGSSSMATVCGGSLAL 471 >gi|322818634|gb|EFZ25985.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi] Length = 252 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 13/151 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57 +RL GR+ + R ++L +G C V G L T P + N +K+ Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSG----LATVCASVYGPREVTNRLESKYN 68 Query: 58 --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 IT E + + R + R+ S+E+ + RSVV LS + QI I Sbjct: 69 ECIITCEVAIAAFAGEKRRAPQ----RRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHIC 124 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMED 146 +V++ DG + A I A +AL D M D Sbjct: 125 VEVLRQDGSDKAACINAACLALVDASVAMRD 155 >gi|126726062|ref|ZP_01741904.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales bacterium HTCC2150] gi|126705266|gb|EBA04357.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales bacterium HTCC2150] Length = 710 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 27/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR + +R I + GS L G+T L TL +E++ + T Sbjct: 318 RIDGRDTSTIRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALHGTYKS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R +GR R ++ RAL++V+ + I + + Sbjct: 378 NFMLHYNFPPYSVG-EVGRFGFTGR---REIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173 + +++G + A++ G +A+ D LK VA ++ G++ Y Sbjct: 434 ITESNGSSSMASVCGGSLAMMDA-------------GVPLKSAVAGVAMGLILEDDGSYA 480 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 I+ D+ ED D+D T++G I +Q + A + + L AKD Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPEIMEKALAQAKD 532 >gi|296285001|ref|ZP_06862999.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium bathyomarinum JL354] Length = 769 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 18/227 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+ +++R I + GS L G+T + T TL E++ + + Sbjct: 318 RIDGRKLDEVRPIEAIVGLLPRTHGSSLFTRGETQAICTTTLGTKDAEQMIDGLEGLSYN 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R +GR R ++ RAL V+ I + D Sbjct: 378 HFMLHYNFPPYSVGE-VGRFGFTGR---REIGHGKLAWRALHPVLPSHEDFPYTIRVLSD 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D +E + + +L+G A+ + D+ Sbjct: 434 ITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDDFAV---------LSDI 484 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 ED D+D ++SG I +Q + A +Q+ L AK Sbjct: 485 LGDEDHLGDMDFKVAGSESG-ITSLQMDIKVAGITQEIMAKALEQAK 530 >gi|126740759|ref|ZP_01756444.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp. SK209-2-6] gi|126718055|gb|EBA14772.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp. SK209-2-6] Length = 705 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 98/240 (40%), Gaps = 41/240 (17%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR+ +++R+I + GS L G+T L TL E+ + N K Sbjct: 310 RIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 ++ Y P S G GR GG +R IG RAL++V+ + Sbjct: 370 NFLL-HYNFPPYSVGE-------VGRVGGPG---RREIGHGKLAWRALQAVLPAATDFPY 418 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + ++ +++G + A++ G +++ D LK VA ++ G++ Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIL 465 Query: 171 ----GYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 Y I+ D+ ED D+D T+ G I +Q + A + + L AKD Sbjct: 466 EDDGSYAILSDILGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITPEIMEKALAQAKD 524 >gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus HB8] gi|81364132|sp|Q5SJ75|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8] Length = 713 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKV--PMWIRNTK 55 R GR +R I + V A GS + G+T +L T TL +E++ + I T+ Sbjct: 327 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDDLGIDETE 386 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P STG + VS R+ G + RAL++V+ I + Sbjct: 387 KFLV--HYNFPPFSTGEVRRLRGVSRREVGHGN----LAKRALKAVMPKEEDFPYTIRVV 440 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 DV++++G + A + +AL D Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDA 465 >gi|297566425|ref|YP_003685397.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM 9946] gi|296850874|gb|ADH63889.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM 9946] Length = 718 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 10/144 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR Q+R I + V A GS + G+T +L TL + V +T+ Sbjct: 329 RADGRTNTQVRPIWIEADVLPRAHGSAVFARGETQVLGVVTLGTGRDAQLVDDLGLDTED 388 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P STG + VS R+ G + RALR+V+ I + Sbjct: 389 PFLV-HYNFPPYSTGEVKRLRGVSRREVGHGN----LAKRALRAVLPSQEEFPYTIRVVG 443 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 DV++++G + A +AL D Sbjct: 444 DVLESNGSSSMATTCAGCLALMDA 467 >gi|260438015|ref|ZP_05791831.1| putative surface/cell-adhesion protein [Butyrivibrio crossotus DSM 2876] gi|292809495|gb|EFF68700.1| putative surface/cell-adhesion protein [Butyrivibrio crossotus DSM 2876] Length = 279 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 5/108 (4%) Query: 99 RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--- 155 R V DLS LG R+I D D T + GA V D +++ D K + + Sbjct: 135 RPVADLSKLGDREITFTSDAYAEDFSPITVPVEGAKVTW-DGKEYVTDADGKIVIDKADF 193 Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203 + H IS G P+V L + D I V A+ V ++ + E + Sbjct: 194 TVGDHSVGISKVAEDGVPLV-LRFASDYKITVTADMVKAEAPAVTEPE 240 >gi|77457010|ref|YP_346515.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens Pf0-1] gi|123606003|sp|Q3KI80|PNP_PSEPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77381013|gb|ABA72526.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens Pf0-1] Length = 701 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++ +++ + + I + Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVSAMLPAADVFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483 >gi|254450859|ref|ZP_05064296.1| polyribonucleotide nucleotidyltransferase [Octadecabacter antarcticus 238] gi|198265265|gb|EDY89535.1| polyribonucleotide nucleotidyltransferase [Octadecabacter antarcticus 238] Length = 710 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 26/205 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+ +++REI + GS L G+T L TL +E++ ++ Sbjct: 318 RIDGRKTDEIREIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDSLQGMYKS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVG-EVGRFGPPGR---REIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173 + +++G + A++ G +++ D LK VA ++ G++ Y Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIMEDSGEYA 480 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197 I+ D+ ED D+D T++G Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTENG 505 >gi|94264886|ref|ZP_01288660.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] gi|93454656|gb|EAT04924.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] Length = 703 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 19/239 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ R+ +++R I+ GS L G+T +L +ATL +E+ + Sbjct: 322 RIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESLSGMNFK 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G S R G + RA+++V+ + I + + Sbjct: 382 PFMLHYNFPPYCVGEVRFLRGPSRRDIGHGA----LAERAIQAVLPDADSFPYTIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++++G + A + GA ++L D M+ + + + +G AI + D+ Sbjct: 438 VLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVAI---------LSDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-RIADLIKLQK 235 ED D+D TD G I +Q + S++ LN AKD R+ L K+Q+ Sbjct: 489 LGDEDHLGDMDFKVAGTDEG-ITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQ 546 >gi|89056519|ref|YP_511970.1| polynucleotide phosphorylase/polyadenylase [Jannaschia sp. CCS1] gi|123094095|sp|Q28K17|PNP_JANSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88866068|gb|ABD56945.1| Polyribonucleotide nucleotidyltransferase [Jannaschia sp. CCS1] Length = 706 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 33/235 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +++R+I +V GS L G+T L TL E+ + N K Sbjct: 318 RIDGRALDEVRDIVSETKVLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 57 GWITAEYGMLPRSTGN--RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 ++ Y P S G RV G G R ++ RAL++V+ + + + Sbjct: 378 NFLL-HYNFPPYSVGEAGRV------GPPGRREIGHGKLAWRALQAVLPAATDFPYTVRV 430 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---- 170 ++ +++G + A++ G +++ D LK VA ++ G++ Sbjct: 431 VSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLVLEDDG 477 Query: 171 GYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 Y I+ D+ ED D+D T++G I +Q + A +Q+ L AK Sbjct: 478 SYGILTDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITQEIMEKALEQAK 531 >gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo laibachii Nc14] Length = 261 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 11/147 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNT----- 54 +RL GR+E + R + V A+GS ++ G+T +L +V ++N Sbjct: 18 LRLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVVYGPREVDGTTLKNAKGAAS 77 Query: 55 --KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K + E +T +R S R ++ E+ I + S + + QI Sbjct: 78 LVKKAIVHCECTQASFATSDRKVSRNASDR---KNVEMSSAIKQIFESCIFTNLYPQSQI 134 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD 139 I V+QADGG A+I +AL D Sbjct: 135 SIYPQVLQADGGELAASINATSLALMD 161 >gi|254510470|ref|ZP_05122537.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae bacterium KLH11] gi|221534181|gb|EEE37169.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae bacterium KLH11] Length = 716 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 41/240 (17%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I + GS L G+T L TL E+ + N K Sbjct: 318 RIDGRSTTDIRSIVAETSMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 ++ Y P S G GR GG +R IG RAL++V+ + Sbjct: 378 NFLL-HYNFPPYSVGE-------VGRVGGPG---RREIGHGKLAWRALQAVLPAATDFPY 426 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I I ++ +++G + A++ G +++ D LK VA ++ G++ Sbjct: 427 TIRIVSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIL 473 Query: 171 ----GYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 Y I+ D+ ED D+D T++G I +Q + A + + L AKD Sbjct: 474 EDDGNYAILSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKD 532 >gi|189424733|ref|YP_001951910.1| polynucleotide phosphorylase/polyadenylase [Geobacter lovleyi SZ] gi|257096692|sp|B3EAF2|PNP_GEOLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189420992|gb|ACD95390.1| Polyribonucleotide nucleotidyltransferase [Geobacter lovleyi SZ] Length = 703 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 10/145 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R+ GR +R I++ + A GS L G+T +L ATL E+++ + Sbjct: 314 IRIDGRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAAATLGTSQDEQRMDSLYGEYR 373 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G R A R+ G +R I L + D I I Sbjct: 374 KKFML-HYNFPPFSVGETSFRLAPGRREIGHGMLAERAISAILPNHDDF----PYTIRIV 428 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 + ++++G + A + G ++L D Sbjct: 429 AETLESNGSSSMATVCGGCLSLMDA 453 >gi|94269020|ref|ZP_01291349.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] gi|93451373|gb|EAT02233.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] Length = 703 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 19/239 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ R+ +++R I+ GS L G+T +L +ATL +E+ + Sbjct: 322 RIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESLSGMNFK 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G S R G + RA+++V+ + I + + Sbjct: 382 PFMLHYNFPPYCVGEVRFLRGPSRRDIGHGA----LAERAIQAVLPDADSFPYTIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++++G + A + GA ++L D M+ + + + +G AI + D+ Sbjct: 438 VLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVAI---------LSDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-RIADLIKLQK 235 ED D+D TD G I +Q + S++ LN AKD R+ L K+Q+ Sbjct: 489 LGDEDHLGDMDFKVAGTDEG-ITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQ 546 >gi|213423108|ref|ZP_03356125.1| hypothetical protein Salmonentericaenterica_37027 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 34 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 21/33 (63%) Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 D N VMT+ G I+EVQG+AE FS + +L Sbjct: 2 DMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLL 34 >gi|283954815|ref|ZP_06372331.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 414] gi|283793655|gb|EFC32408.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 414] Length = 713 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R IS+ + A GSCL G T L ATL E M T+ I Sbjct: 355 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 414 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + G V + G R + RAL VD + +++ +++ Sbjct: 415 NERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 472 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 473 ESNGSSSMATVCGGSLAL 490 >gi|300025003|ref|YP_003757614.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium denitrificans ATCC 51888] gi|299526824|gb|ADJ25293.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium denitrificans ATCC 51888] Length = 733 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 21/173 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 MR+ GR +R I V GS L G+T L ATL +E+ + TK Sbjct: 314 MRIDGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTKK 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + + R+ G + R I L S D + + Sbjct: 374 ERFLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAIHPMLPSQEDF----PYTLRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A + G+ +AL D LK VA I+ G++ Sbjct: 430 EITESNGSSSMATVCGSSLALMDA-------------GVPLKSPVAGIAMGLI 469 >gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter tengcongensis MB4] gi|81481549|sp|Q8RA43|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Thermoanaerobacter tengcongensis MB4] Length = 707 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 29/148 (19%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 M L+GR + + T +V++ A G+ VK+GDT +L TA + + G Sbjct: 8 MELAGR-----KLVVQTGKVAQQANGAAWVKYGDTVVLVTACAS-------KEPREGIDF 55 Query: 58 -WITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109 +T EY G +P G +KRE G+ ++ R+I R +R + Sbjct: 56 FPLTVEYEERLYSIGKIP---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPEGYRND 109 Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVAL 137 Q+I + D A+ G+ VAL Sbjct: 110 VQVIATVLSVDPDAQPEIVAMIGSSVAL 137 >gi|303326248|ref|ZP_07356691.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. 3_1_syn3] gi|302864164|gb|EFL87095.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. 3_1_syn3] Length = 747 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 9/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L + G+T L ATL ++ G +T Sbjct: 324 RIDGRDTKSVRPIQIQTGVLPRAHGSALFRRGETKSLVIATLGSSTDEQRMDSLTGDVTK 383 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G VK VS R+ G + ++LR ++ A + + + Sbjct: 384 RFMLHYNFPPYCVGE-VKPVRVSRREIGHGA----LAEKSLRPILPADADFPFTLRVVAE 438 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 ++++G + AA+ G ++L D Sbjct: 439 TMESNGSSSMAAVCGGSLSLMDA 461 >gi|260655007|ref|ZP_05860495.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi E3_33 E1] gi|260630322|gb|EEX48516.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi E3_33 E1] Length = 756 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 23/175 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNT 54 +R GR +Q+R IS + GS L G+T L TATL ++ + N Sbjct: 311 VRADGRATDQIRPISCEIGLLPRVHGSALFTRGETMSLATATLGMLGEDDQMMDGLKHNE 370 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y P S G R+ G +R + + S D + + + Sbjct: 371 PNKRFLLHYNFPPFSVGEVRPMRGPGRREIGHGALAERALAPIIPSEEDFPYV----VRV 426 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 D+++++G + A+I G +AL +K HVA I+ G++ Sbjct: 427 VSDILESNGSSSQASICGGSLAL-------------MAAGVPVKCHVAGIAMGLI 468 >gi|146337231|ref|YP_001202279.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp. ORS278] gi|187470941|sp|A4YJF3|PNP_BRASO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146190037|emb|CAL74029.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Bradyrhizobium sp. ORS278] Length = 719 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 23/203 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T L TL +E+ + T Sbjct: 316 RIDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+ V+ + Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 +V +++G + A + G+ +AL D ++ + + +L+G A+ +L Sbjct: 429 VSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLSDILG---- 484 Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197 ED D+D T+SG Sbjct: 485 -----DEDHLGDMDFKVAGTESG 502 >gi|289676030|ref|ZP_06496920.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. syringae FF5] Length = 472 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 87 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 146 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 147 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 199 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + V +G AI +L Sbjct: 200 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 254 >gi|16078732|ref|NP_389551.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. 168] gi|221309547|ref|ZP_03591394.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. 168] gi|221313871|ref|ZP_03595676.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323066|ref|ZP_03604360.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. SMY] gi|321315436|ref|YP_004207723.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5] gi|1709698|sp|P50849|PNP_BACSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; AltName: Full=Vegetative protein 15; Short=VEG15 gi|1184680|gb|AAC43595.1| polynucleotide phosphorylase [Bacillus subtilis] gi|2634041|emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp. subtilis str. 168] gi|291484223|dbj|BAI85298.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. natto BEST195] gi|320021710|gb|ADV96696.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5] gi|1589234|prf||2210369A polynucleotide phosphorylase Length = 705 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 9/124 (7%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEY--GMLPRSTGNR 73 T +++K A G+ ++++GDT +L+TAT +E P+ + Y G +P G Sbjct: 21 TGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP---GGF 77 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 +KRE GR ++ R+I R +R + Q+I + + + AA+ G+ Sbjct: 78 IKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134 Query: 134 WVAL 137 +AL Sbjct: 135 SLAL 138 >gi|218290095|ref|ZP_03494257.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius LAA1] gi|218239804|gb|EED06993.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius LAA1] Length = 735 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 8/144 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R IS + GS L G T L+ TL +E++ + K Sbjct: 310 IRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A S R G + RAL V+ I + Sbjct: 370 NRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGA----LGERALDPVIPSPEEFPYAIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 ++++++G T A+I G+ +AL D Sbjct: 426 EILESNGSTSQASICGSTMALMDA 449 >gi|160872287|ref|ZP_02062419.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Rickettsiella grylli] gi|159121086|gb|EDP46424.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Rickettsiella grylli] Length = 712 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR + +R I++ GS L G+T L TL + + + Sbjct: 325 RIDGRDKKAVRPITIEPGFLPRTHGSALFTRGETQALVVTTLGTDRDAQTVEALDGEGRE 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RALR+V+ + + + + Sbjct: 385 TFMLHYNFPPYSVGETGQIGSPKRREIGHGN----LAKRALRAVLPSESDFPYVLRVVSE 440 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A + GA VAL D LK HVA I+ G++ Sbjct: 441 ITESNGSSSMATVCGASVALMDA-------------GVPLKKHVAGIAMGLI 479 >gi|270294853|ref|ZP_06201054.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20] gi|270274100|gb|EFA19961.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20] Length = 714 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58 RL GR+ ++R I GS + G+T L+T TL K+ I + +HG Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + ++ +++ D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPVNYPYVVRVV--SD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455 >gi|163784067|ref|ZP_02179020.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp. 128-5-R1-1] gi|159880666|gb|EDP74217.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp. 128-5-R1-1] Length = 708 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 94/245 (38%), Gaps = 51/245 (20%) Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63 +EIS+ T +K A G+ +VK G+T + A + + +P+ + + T Y Sbjct: 18 KEISIETGYFAKQANGAVIVKSGETEVFVAAVVSSEAQPDIDFLPLTVEYREK---TYAY 74 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD- 122 G +P G VKRE G+ R + R+I R +R + +II + AD Sbjct: 75 GKIP---GGFVKRE---GKPSNREILVSRLIDRPIRPL--FPKGFHNDVIITAMTLSADD 126 Query: 123 -GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 AITG AL E G +A + + G I + Y E Sbjct: 127 KNDPDVLAITGVSAALMISEAPFE-------------GPIAGVRVARVDGKFIANPTYEE 173 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D+D T IV V+G +E F+ +H +++ I+ Sbjct: 174 RDKSDMDIVVAGTKDA-IVMVEGGSEEVPEEEILEAIMFAHEHIKQLIDFQ-------IE 225 Query: 233 LQKDV 237 LQK V Sbjct: 226 LQKKV 230 >gi|258511422|ref|YP_003184856.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478148|gb|ACV58467.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 735 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 8/144 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R IS + GS L G T L+ TL +E++ + K Sbjct: 310 IRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A S R G + RAL V+ I + Sbjct: 370 NRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGA----LGERALDPVIPSPEEFPYAIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 ++++++G T A+I G+ +AL D Sbjct: 426 EILESNGSTSQASICGSTMALMDA 449 >gi|302834702|ref|XP_002948913.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f. nagariensis] gi|300265658|gb|EFJ49848.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f. nagariensis] Length = 238 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 19/161 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R + + RV A+GS V+FG T ++ + + + T G + Sbjct: 13 RADGRGLEEFRTVFIKTRVLSQAKGSAYVEFGTTKVMVGVFGPRQSEVKLGFTDTGRLNC 72 Query: 62 EYGM-------LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 E + L +S +++ A G Q +Q + + ++V D+SA+ Sbjct: 73 EVRLTSFASHKLAKSGQTQLESSAAQGLQQALEPSVQ--LDKFPKAVFDVSAM------- 123 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155 +++A G IT A VAL D + D Q+S+ Sbjct: 124 ---ILEAGGSDLAVLITAASVALADAGVELYDLVPAVQVSK 161 >gi|197106893|ref|YP_002132270.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium zucineum HLK1] gi|226702673|sp|B4RC48|PNP_PHEZH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|196480313|gb|ACG79841.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium zucineum HLK1] Length = 715 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 38/243 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +Q+R I V A GS L G+T L TL +E++ + Sbjct: 317 RIDGRTVDQVRPILGEVGVLPRAHGSALFTRGETQALCVTTLGTGDDEQLIDALEGKYFE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G ++ RALR ++ I I + Sbjct: 377 KFMLHYNFPPFSVGETGRMGSPGRREVGHG----KLAWRALRPMLPSYEEFPYTIRIVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYPI 174 + +++G + A + G+ +AL D LK V+ I+ G++ G+ + Sbjct: 433 IFESNGSSSMATVCGSSLALMDA-------------GVPLKKPVSGIAMGLILEKDGFAV 479 Query: 175 V-DLDYGEDSTIDVDANFVMTDSG-----------HIVE--VQGSAERATFSQDHFFAML 220 + D+ ED D+D T G I E ++ + E+A +DH A + Sbjct: 480 LSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKKALEQAKGGRDHILAEM 539 Query: 221 NLA 223 N A Sbjct: 540 NKA 542 >gi|291279901|ref|YP_003496736.1| polyribonucleotide nucleotidyltransferase [Deferribacter desulfuricans SSM1] gi|290754603|dbj|BAI80980.1| polyribonucleotide nucleotidyltransferase [Deferribacter desulfuricans SSM1] Length = 700 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 26/205 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR ++R I + + A GS L G+T L TATL K + + G Sbjct: 321 RVDGRTYTEIRPIDIEVDLLPCAHGSALFTRGETQALVTATLGTKFDSQLLDDLEGETYK 380 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G A R+ G + RAL S++ I + + Sbjct: 381 RFMLHYNFPPFSVGEIGFLRAPGRREIGHG----FLAERALASMLPGEDEFPYTIRVVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173 +++++G + A + G +AL D ++D VA I+ G++ Y Sbjct: 437 ILESNGSSSMATVCGGSLALMDAGVPIKDV-------------VAGIAMGLIYEGDDNYV 483 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197 I+ D+ ED D+D T++G Sbjct: 484 ILSDIMGIEDHLGDMDFKVTGTETG 508 >gi|254437652|ref|ZP_05051146.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus 307] gi|198253098|gb|EDY77412.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus 307] Length = 710 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 26/205 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+ +++R+I + GS L G+T L TL +E++ + Sbjct: 318 RIDGRKTDEIRDIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDSLSGMYKS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R +GR R ++ RAL++V+ + I + + Sbjct: 378 NFMLHYNFPPYSVG-EVGRFGFTGR---REIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173 + +++G + A++ G +++ D LK VA ++ G++ Y Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIMQDDGSYA 480 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197 I+ D+ ED D+D T++G Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTEAG 505 >gi|83945015|ref|ZP_00957381.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii HTCC2633] gi|83851797|gb|EAP89652.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii HTCC2633] Length = 709 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +Q+R I V GS L G+T L TL +E+ + T Sbjct: 317 RIDGRSLDQVRPIVSEATVLPRTHGSALFTRGETQALAVVTLGTGEDEQFIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R A R+ G ++ RAL +V+ + + + + Sbjct: 377 RFLLHYNFPPYSVGETSFRLAPGRREIGHG----KLAWRALNAVMPNAETFPYTVRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A + G +AL D Sbjct: 433 ITESNGSSSMATVCGGSLALMDA 455 >gi|313673255|ref|YP_004051366.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio nitroreducens DSM 19672] gi|312940011|gb|ADR19203.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio nitroreducens DSM 19672] Length = 706 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 9/184 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR+ +++R I + + A GS L G+T L + TL K+ + + G Sbjct: 320 IRVDGRRYDEIRPIDIEVGLLPRAHGSALFTRGETQALVSTTLGTKMDSQLVDDIEGNSS 379 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + RAL V+ + I + Sbjct: 380 KRFMLHYNFPPFSVGEVGRMGAPGRREVGHGA----LAERALSFVIPDESDFPYTIRVVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIV 175 ++++++G + A + G ++L D ++D + + KG A +S M + Sbjct: 436 EILESNGSSSMATVCGGCLSLMDAGVPVKDMVAGIAMGLIYEKGRYAILSDIMGIEDHLG 495 Query: 176 DLDY 179 D+D+ Sbjct: 496 DMDF 499 >gi|83644105|ref|YP_432540.1| polynucleotide phosphorylase/polyadenylase [Hahella chejuensis KCTC 2396] gi|123726449|sp|Q2SMK9|PNP_HAHCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83632148|gb|ABC28115.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Hahella chejuensis KCTC 2396] Length = 703 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 12/110 (10%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPRSTGN 72 T R+++ A G+ LV DT +L TA E E VP + + + T G +P G Sbjct: 19 TGRIARQATGAVLVTMDDTVVLVTAVAEKEAVPGRDFFPLSVHYQEKTYAAGRIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122 KRE GR + R+I R +R + + QII C V+ A+ Sbjct: 76 YFKRE---GRPSEKETLTSRLIDRPIRPLFPDGFMNEVQII--CTVMSAN 120 >gi|291613953|ref|YP_003524110.1| polyribonucleotide nucleotidyltransferase [Sideroxydans lithotrophicus ES-1] gi|291584065|gb|ADE11723.1| polyribonucleotide nucleotidyltransferase [Sideroxydans lithotrophicus ES-1] Length = 709 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL + + ++ Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSVLFTRGETQALVVATLGSMRDSQTIDALQGEYSD 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P STG +GR G + +EI R+ RAL +V+ I + Sbjct: 380 RFMLHYNFPPYSTGE-------TGRVGTPKRREIGHGRLAKRALVAVLPSEEECGYAIRV 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G ++L D +K HVA I+ G++ Sbjct: 433 VSEITESNGSSSMASVCGGCLSLMDA-------------GVPVKTHVAGIAMGLI 474 >gi|302878493|ref|YP_003847057.1| polyribonucleotide nucleotidyltransferase [Gallionella capsiferriformans ES-2] gi|302581282|gb|ADL55293.1| polyribonucleotide nucleotidyltransferase [Gallionella capsiferriformans ES-2] Length = 701 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R+I++ V GS L G+T + ATL + G T Sbjct: 311 RIDGRDTRTVRQITIRNGVLARTHGSALFTRGETQAVVVATLGSMRDAQKVDALQGEFTD 370 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P +TG +GR G + +EI R+ RAL +V+ + I Sbjct: 371 RFMLHYNFPPFATGE-------TGRVGSPKRREIGHGRLAKRALVAVLPSEEDFGYAVRI 423 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G +++ D LK HVA I+ G++ Sbjct: 424 VSEITESNGSSSMASVCGGCLSMLDA-------------GVPLKAHVAGIAMGLI 465 >gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa] gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa] Length = 730 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 46/211 (21%), Positives = 82/211 (38%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56 R GR +++R I + A GS L G+T L TL +K V + + Sbjct: 380 RSDGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 439 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G ++R + L S D + ++ Sbjct: 440 KRFYLQYLFPPSCVGEVGRIGAPSRREIGHGMLVERALKPILPSDDDF----PYTVRVES 495 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 + +++G + A++ G +AL D +K +A I+ GM+ Sbjct: 496 TITESNGSSSMASVCGGCLALQDA-------------GVPVKCMIAGIAMGMVLDTEEFG 542 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D + G Sbjct: 543 GDGTPLILSDITGSEDASGDMDFKVAGNEDG 573 >gi|149185848|ref|ZP_01864163.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp. SD-21] gi|148830409|gb|EDL48845.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp. SD-21] Length = 763 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 8/172 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+ +Q+R I + GS L G+T + T TL E++ + + Sbjct: 316 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLSYN 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R+ G ++ RAL V+ I I D Sbjct: 376 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAWRALHPVLPDHEDFPYTIRILSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A + G +++ D +E + + +L+G A+ +L Sbjct: 432 ITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGEDFAVLSDIL 483 >gi|315932402|gb|EFV11345.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 720 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R IS+ + A GSCL G T L ATL E M T+ I Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + G V + G R + RAL +D + +++ +++ Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSLDENYPYVIRLV--SEIL 453 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 454 ESNGSSSMATVCGGSLAL 471 >gi|260425775|ref|ZP_05779755.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45] gi|260423715|gb|EEX16965.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45] Length = 716 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 26/205 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R I V GS L G+T L TL I + HG + Sbjct: 318 RIDGRALDQVRPIVSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL++V+ I + + Sbjct: 378 NFLLHYNFPPYSVG-EVGRVGSPGR---REIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173 + +++G + A++ G +++ D LK VA ++ G++ Y Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLVLEDGGEYA 480 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197 ++ D+ ED D+D T++G Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG 505 >gi|114571589|ref|YP_758269.1| polynucleotide phosphorylase/polyadenylase [Maricaulis maris MCS10] gi|122314882|sp|Q0AK62|PNP_MARMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114342051|gb|ABI67331.1| Polyribonucleotide nucleotidyltransferase [Maricaulis maris MCS10] Length = 710 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +Q+R I + GS L G+T L ATL +E+ + T Sbjct: 317 RIDGRSLDQVRSIVSEAGILPRTHGSALFTRGETQALVVATLGTGEDEQFIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R A R+ G ++ RA+++V+ I + + Sbjct: 377 RFMLHYNFPPYSVGETSFRLAPGRREIGHG----KLAWRAVKAVLPTKEDFPYTIRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A + GA +++ D Sbjct: 433 ITESNGSSSMATVCGASLSMMDA 455 >gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666] gi|123355467|sp|Q127W8|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666] Length = 707 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58 R+ GR +R I + V GS L G+T L TL E+ I + Sbjct: 317 RIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL +V+ + + Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIAVLPTKEEFPYTMRV 429 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 430 VSEITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471 >gi|283956649|ref|ZP_06374128.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 1336] gi|283791898|gb|EFC30688.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 1336] Length = 719 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R IS+ + A GSCL G T L ATL E M T+ I Sbjct: 336 RADGRSLNEVRPISIETNLLPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + G V + G R + RAL +D + +++ +++ Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSIDENYPYVIRLV--SEIL 453 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 454 ESNGSSSMATVCGGSLAL 471 >gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax ferrireducens T118] gi|122479529|sp|Q21YD1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118] Length = 706 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58 R+ GR +R I + V GS L G+T L TL E+ I + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL +V+ + + Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALMAVLPSKEEFPYTMRV 429 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 430 VSEITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471 >gi|213018630|ref|ZP_03334438.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995581|gb|EEB56221.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 758 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 25/175 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ R+ +++R+I + + GS L G T L L +E++ I + Sbjct: 310 VRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRR 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P + G EA + R GR +EI ++ +A+ V+ + I + Sbjct: 370 EHFMLHYNFPPFAVG-----EASAIRAPGR-REIGHGKLAWKAIHPVLPDKSEFPYTIRV 423 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +++++DG + A + G +AL D +K VA I+ G++ Sbjct: 424 VSEIMESDGSSSMATVCGTSIALMDT-------------GVPIKAPVAGIAMGLI 465 >gi|330504823|ref|YP_004381692.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina NK-01] gi|328919109|gb|AEB59940.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina NK-01] Length = 701 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 8/172 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + +R + L S + I + + Sbjct: 376 PFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEF----PYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ GA +AL D M+ + VL+G A+ +L Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGDKFAVLTDIL 483 >gi|86139387|ref|ZP_01057956.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193] gi|85823890|gb|EAQ44096.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193] Length = 702 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 40/212 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +++R+I + GS L G+T L TL E+ + N K Sbjct: 310 RIDGRATDEIRDIVSETGMLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110 ++ Y P S G GR GG +R IG RAL++V+ + Sbjct: 370 NFLL-HYNFPPYSVGE-------VGRVGGPG---RREIGHGKLAWRALQAVLPAATDFPY 418 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + ++ +++G + A++ G +++ D LK VA ++ G++ Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIL 465 Query: 171 ----GYPIV-DLDYGEDSTIDVDANFVMTDSG 197 Y I+ D+ ED D+D T++G Sbjct: 466 EDDGSYAILSDILGDEDHLGDMDFKVAGTEAG 497 >gi|311030081|ref|ZP_07708171.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. m3-13] Length = 715 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 9/122 (7%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++K A G+ +V++GDT +L+TAT +K+ + + G +P G +K Sbjct: 33 QLAKQANGAVMVRYGDTAVLSTATASKEPKKLDFFPLTVNYEERLYAVGKIP---GGFIK 89 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR ++ R+I R +R + Q+I + + + AA+ G+ + Sbjct: 90 RE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGSSL 146 Query: 136 AL 137 AL Sbjct: 147 AL 148 >gi|27375890|ref|NP_767419.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium japonicum USDA 110] gi|81740094|sp|Q89WB3|PNP_BRAJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27349028|dbj|BAC46044.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum USDA 110] Length = 720 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 23/203 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T + TL +E+ + T Sbjct: 316 RIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+ V+ I + Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ GA +AL D ++ + + +L+ A+ +L Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAVLSDILG---- 484 Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197 ED D+D T+SG Sbjct: 485 -----DEDHLGDMDFKVAGTESG 502 >gi|302788516|ref|XP_002976027.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii] gi|300156303|gb|EFJ22932.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii] Length = 705 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 39/193 (20%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R+ GR +R++ + GS L G+T +L T TL +K+ + K Sbjct: 315 IRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPPK 374 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ---- 111 ++ Y P S N V G+ GG + +R +G + L AL + Sbjct: 375 KRFMV-HYSFPPFSV-NEV------GKVGGLN---RREVGHGTLAEKALVALLPPEDENF 423 Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 + ++ +V+ +DG + A + G +AL D LK HVA IS G+ Sbjct: 424 PYSVRVNSEVMASDGSSSMATVCGGSLALMDA-------------GIPLKSHVAGISVGL 470 Query: 169 LCGYPIVDLDYGE 181 + VD + GE Sbjct: 471 MTN---VDAETGE 480 >gi|133919188|emb|CAL29642.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium elkanii] Length = 180 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T + TL +E+ + T Sbjct: 7 RIDGRDAKTVRNIIAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 66 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+ V+ I + Sbjct: 67 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 119 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA ++L D ++ + + +L+G A+ +L Sbjct: 120 VSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGQRFAVLSDIL 174 >gi|108763580|ref|YP_630302.1| polynucleotide phosphorylase/polyadenylase [Myxococcus xanthus DK 1622] gi|123374693|sp|Q1DAM1|PNP_MYXXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|108467460|gb|ABF92645.1| polyribonucleotide nucleotidyltransferase [Myxococcus xanthus DK 1622] Length = 722 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 39/203 (19%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWITAEY-------GMLPRST 70 R++K A+GS +V++GDT LL TA + EK ++ +T EY G +P Sbjct: 19 RLAKQADGSVVVRYGDTMLLVTAVSAREK-----KDIDFLPLTVEYQEKLYSAGRIP--- 70 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TA 128 G+ KRE GR + R++ R+ R + QII VI +D Sbjct: 71 GSYFKRE---GRLTEKETLASRLVDRSCRPLFPEGYAYETQII--ASVISSDPENEGDIH 125 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ITGA AL + D G +A I G + G + + + D+D Sbjct: 126 GITGASAAL-----WVSDIP--------FDGPIAGIRVGRVGGQLVANPTAKQREQSDLD 172 Query: 189 ANFVMTDS-GHIVEVQGSAERAT 210 VM S IV V+G AE + Sbjct: 173 --LVMAVSRKAIVMVEGGAEEVS 193 >gi|261416773|ref|YP_003250456.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373229|gb|ACX75974.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327483|gb|ADL26684.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 744 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 20/172 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR ++R I + V A GS + + G+T L TL K + G Sbjct: 338 VRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRGETQGLVICTLGTKADEQRFESLQGEGA 397 Query: 61 AEYGM---LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y + P + K+ +S R+ G + R+L +V+ L I + + Sbjct: 398 KSYMLHYNFPPFSVGECKKLGLSRREIGHGH----LAERSLAAVLPLPEDFPYTIRVVSE 453 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 +++++G + A++ G ++L D +K VA I+ G++ Sbjct: 454 IMESNGSSSMASVCGGCLSLMDA-------------GVPIKAPVAGIAMGLI 492 >gi|126730394|ref|ZP_01746205.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37] gi|126709127|gb|EBA08182.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37] Length = 713 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 26/205 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +Q+R I + GS L G+T L TL +E++ ++ T Sbjct: 318 RIDGRALDQVRSIVSETGILPRTHGSALFTRGETQALVVTTLGTGDDEQMIDALQGTYKS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVG-EVGRVGSPGR---REIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173 + +++G + A++ G +++ D LK VA ++ G++ Y Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKSAVAGVAMGLVLEEDGSYG 480 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197 I+ D+ ED D+D T++G Sbjct: 481 ILTDILGDEDHLGDMDFKVAGTENG 505 >gi|302763984|ref|XP_002965413.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii] gi|300166227|gb|EFJ32833.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii] Length = 705 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 39/193 (20%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R+ GR +R++ + GS L G+T +L T TL +K+ + K Sbjct: 315 IRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPPK 374 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ---- 111 ++ Y P S N V G+ GG + +R +G + L AL + Sbjct: 375 KRFMV-HYSFPPFSV-NEV------GKVGGLN---RREVGHGTLAEKALVALLPPEDENF 423 Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 + ++ +V+ +DG + A + G +AL D LK HVA IS G+ Sbjct: 424 PYSVRVNSEVMASDGSSSMATVCGGSLALMDA-------------GIPLKSHVAGISVGL 470 Query: 169 LCGYPIVDLDYGE 181 + VD + GE Sbjct: 471 ITN---VDAETGE 480 >gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST] gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST] Length = 308 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 5/145 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R+ V A+GS V+ G+T ++ + ++P + + G + Sbjct: 43 RKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFC 102 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + P + R + R + + + AL V + QI + +V++ Sbjct: 103 DLKFSPFAPAVRKTHQT-----DARERSMTAALTSALNPSVCRHLFPNLQIDVFANVLED 157 Query: 122 DGGTRTAAITGAWVALHDCLQHMED 146 DG AIT A +AL D M D Sbjct: 158 DGSALAVAITAAGLALGDACVPMFD 182 >gi|212709941|ref|ZP_03318069.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM 30120] gi|212687453|gb|EEB46981.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM 30120] Length = 685 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + + G T Sbjct: 294 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 353 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 354 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSQAEFPYTVRVVSE 409 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A++ GA +AL D Sbjct: 410 ITESNGSSSMASVCGASLALMDA 432 >gi|148244575|ref|YP_001219269.1| polynucleotide phosphorylase/polyadenylase [Candidatus Vesicomyosocius okutanii HA] gi|187611332|sp|A5CWW8|PNP_VESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146326402|dbj|BAF61545.1| polyribonucleotide nucleotidyltransferase [Candidatus Vesicomyosocius okutanii HA] Length = 695 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 10/145 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R+ GR +RE+ + + K GS L G+T L TL K + + Sbjct: 315 RIDGRNNETVRELKIETGILKNTHGSALFTRGETQALVVTTLGPKSDAQLIEKLESPERQ 374 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + Y P G + + R+ G +R I L S+ + + + Sbjct: 375 NNYFLLHYNFPPYCVGETGRLATIKRREIGHGHLARRGITACLPSIEEF----PYTVRVV 430 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 ++ +++G + A++ G+ ++L D Sbjct: 431 SEITESNGSSSMASVCGSSLSLMDA 455 >gi|57242200|ref|ZP_00370139.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter upsaliensis RM3195] gi|57016880|gb|EAL53662.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter upsaliensis RM3195] Length = 717 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 24/149 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------------LEEKVPM 49 R GR N++R I + + A GSCL G T L AT L EK P+ Sbjct: 339 RADGRALNEVRAIEIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMVDLLSEKNPI 398 Query: 50 WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109 R Y S G +A R+ G ++ RAL VD + Sbjct: 399 SER------FMVNYNFPGFSVGEASPIKAPGRRELGHGN----LVKRALYPSVDENYPYV 448 Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALH 138 +++ ++++++G + A + G +AL Sbjct: 449 VRLV--SEILESNGSSSMATVCGGSLALR 475 >gi|330982561|gb|EGH80664.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 519 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 23/203 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 93 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 152 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R++++++ + + I + Sbjct: 153 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 205 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ +++G + A++ GA +AL D M+ + V +G AI + Sbjct: 206 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------L 256 Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197 D+ ED D+D T G Sbjct: 257 TDILGDEDHLGDMDFKVAGTSKG 279 >gi|120609946|ref|YP_969624.1| polynucleotide phosphorylase/polyadenylase [Acidovorax citrulli AAC00-1] gi|187470931|sp|A1TLL2|PNP_ACIAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120588410|gb|ABM31850.1| 3' exoribonuclease [Acidovorax citrulli AAC00-1] Length = 758 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58 R+ GR +R I + V GS L G+T L +TL E+ I + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ I + + Sbjct: 377 RFMFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471 >gi|158320566|ref|YP_001513073.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus oremlandii OhILAs] gi|187470976|sp|A8MFB4|PNP_ALKOO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|158140765|gb|ABW19077.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus oremlandii OhILAs] Length = 706 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 106/238 (44%), Gaps = 35/238 (14%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74 ++++ + GSCL+K+G T +L A + E + + + + G +P G + Sbjct: 20 KLAQLSNGSCLLKYGQTAVLVNACASKSPREGIDFFPLSVDYEEKMYAAGKIP---GGFI 76 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE GR + R+I R +R + QII + D A+ G+ Sbjct: 77 KRE---GRPSENAILTSRLIDRPIRPLFPDGYRNDVQIIATVLSVDIDCTPDIVAMLGSS 133 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL--DYGEDSTIDV----- 187 +AL + D FQ G A++ G++ G +++ D E S++D+ Sbjct: 134 IAL-----SISDIP--FQ------GPTASVHVGLVDGKLLINPTSDEREHSSLDLVVSGT 180 Query: 188 -DANFVMTDSG--HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 DA +M ++G + E Q E F+ + +++ ++ A++ K +++V++ E+ Sbjct: 181 KDA-VMMIEAGANEVTEAQ-MLEAILFAHEEIKNIISFIEEIAAEVGKEKQEVVTLEI 236 >gi|294500891|ref|YP_003564591.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM B1551] gi|294350828|gb|ADE71157.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM B1551] Length = 708 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 17/90 (18%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71 +++K A G+ L+++GDT +L+TAT K P +N +T Y G +P G Sbjct: 23 QLAKQANGAALIRYGDTVVLSTATA-SKEP---KNVDFFPLTVNYEERLYAVGKIP---G 75 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSV 101 +KRE GR ++ R+I R +R + Sbjct: 76 GFIKRE---GRPSEKAILASRLIDRPIRPL 102 >gi|295706237|ref|YP_003599312.1| polynucleotide phosphorylase [Bacillus megaterium DSM 319] gi|294803896|gb|ADF40962.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium DSM 319] Length = 708 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 17/90 (18%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71 +++K A G+ L+++GDT +L+TAT K P +N +T Y G +P G Sbjct: 23 QLAKQANGAALIRYGDTVVLSTATA-SKEP---KNVDFFPLTVNYEERLYAVGKIP---G 75 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSV 101 +KRE GR ++ R+I R +R + Sbjct: 76 GFIKRE---GRPSEKAILASRLIDRPIRPL 102 >gi|225164705|ref|ZP_03726942.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium TAV2] gi|224800695|gb|EEG19054.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium TAV2] Length = 747 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 79/218 (36%), Gaps = 44/218 (20%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R +R ++ GS L + GDT L TATL + G T Sbjct: 315 LRADKRDAKTIRPLASEVGTLPRVHGSALFQRGDTQTLVTATLGPTKEAQDMDGLTGGAT 374 Query: 61 AE-----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGS 109 ++ Y P S G +GR G +R IG R+L V+ + Sbjct: 375 SKSFILHYNFPPYSVGE-------TGRFGNPG---RREIGHGALAERSLVPVLPPEDVFP 424 Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 I + D++ ++G T A+I G +AL D + VA ISCG++ Sbjct: 425 YTIRLVSDIMASNGSTSMASICGGCLALMDA-------------GVPIIAPVAGISCGLM 471 Query: 170 CG----------YPIVDLDYGEDSTIDVDANFVMTDSG 197 I D+ ED D+D T SG Sbjct: 472 TSNKDDGSIDKWVTITDILGEEDHFGDMDFKLAGTTSG 509 >gi|315124713|ref|YP_004066717.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018435|gb|ADT66528.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 719 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R I++ + A GSCL G T L ATL E M T+ I Sbjct: 336 RADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + G V + G R + RAL VD + +++ +++ Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 454 ESNGSSSMATVCGGSLAL 471 >gi|86150855|ref|ZP_01069071.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 260.94] gi|85842025|gb|EAQ59271.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 260.94] Length = 719 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R I++ + A GSCL G T L ATL E M T+ I Sbjct: 336 RADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + G V + G R + RAL VD + +++ +++ Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 454 ESNGSSSMATVCGGSLAL 471 >gi|322418695|ref|YP_004197918.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18] gi|320125082|gb|ADW12642.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18] Length = 696 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 38/221 (17%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I+ + A GS L G+T + ATL E+++ +++ Sbjct: 312 RIDGRDTKTIRNIATEVGLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G R A R+ G +R + + L D I I Sbjct: 372 KFLL-HYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDF----PYTIRIVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+ +++G + A + G +++ D +K VA I+ G+ Sbjct: 427 DITESNGSSSMATVCGGSLSMMDA-------------GIPIKAPVAGIAMGL-------- 465 Query: 177 LDYGEDSTIDVDANFVMTDSGHI----VEVQGSAERATFSQ 213 + G+D I D ++ D H+ +V G+AE T Q Sbjct: 466 IKEGDDFAILSD---ILGDEDHLGDMDFKVAGTAEGVTALQ 503 >gi|170582819|ref|XP_001896302.1| 3' exoribonuclease family, domain 1 containing protein [Brugia malayi] gi|158596526|gb|EDP34857.1| 3' exoribonuclease family, domain 1 containing protein [Brugia malayi] Length = 277 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 26/145 (17%) Query: 8 ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA-------------TLEEKVPMWIRNT 54 +N R I + V +G+ V+FG T ++ + E ++ ++++N Sbjct: 46 QNTFRSIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSADVDPTEGQIYVFLKN- 104 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 I+AE L S + S ++ R I+ I ALRS+V L QI + Sbjct: 105 ----ISAESNSLSGSNS-----FSASNKESNR---IRNAIESALRSIVCLELFCKAQIDV 152 Query: 115 DCDVIQADGGTRTAAITGAWVALHD 139 + V+ DGG A++ + +AL D Sbjct: 153 EITVLNDDGGVLAASLIASSLALID 177 >gi|39977801|ref|XP_370288.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15] gi|145013689|gb|EDJ98330.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15] Length = 280 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 42/210 (20%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRN------ 53 +R+ GR+ N++R R A+GS ++ G T ++ T E P R Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72 Query: 54 ----------TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103 +K + + S+ +R KR GR R QE+Q + AL + + Sbjct: 73 TATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKR----GRGDKRIQELQATVSHALSATLH 128 Query: 104 LSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA 163 I V+ DG A I A +A D M D +V A Sbjct: 129 THLFQHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMAD-------------YVVA 175 Query: 164 ISCGMLCGY--------PIVDLDYGEDSTI 185 S G Y P++DL+ E++ + Sbjct: 176 CSAGSTSSYAAADESADPLLDLNQQEETEL 205 >gi|172040539|ref|YP_001800253.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium urealyticum DSM 7109] gi|257096683|sp|B1VDC1|PNP_CORU7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|171851843|emb|CAQ04819.1| polyribonucleotide nucleotidyltransferase [Corynebacterium urealyticum DSM 7109] Length = 765 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 51/251 (20%), Positives = 101/251 (40%), Gaps = 32/251 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 R+ GR +R++ + ++ A GS L + G+T +L TL E+ + T Sbjct: 380 FRIDGRDHTSIRDLGIVVQLLPRAHGSALFERGETQILGVTTLDTLKMEQTIDSLGPETS 439 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P STG + + R+ G +R + L S + RQ+ Sbjct: 440 KRYI-HHYNFPPYSTGETGRVGSPKRREIGHGALAERALTPVLPSREEFP-YTIRQV--- 494 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 + + ++G T ++ + ++L++ LK VA I+ G++ G Sbjct: 495 SEALGSNGSTSMGSVCASTLSLYNA-------------GVPLKAPVAGIAMGLVSGLVDG 541 Query: 173 -----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + D+ ED+ D+D T S ++ +Q + + + L A+ Sbjct: 542 KEKFVSLTDILGAEDAFGDMDFKVAGT-SEYVTALQLDTKLDGLPSEVLASALGQARSAR 600 Query: 228 ADLIKLQKDVI 238 ++++L +D I Sbjct: 601 LEILQLMEDAI 611 >gi|299137357|ref|ZP_07030539.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp. MP5ACTX8] gi|298600762|gb|EFI56918.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp. MP5ACTX8] Length = 818 Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 27/206 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R R +++R I++ V GS L G+T L +ATL +++ + K Sbjct: 314 IRPDHRAFDEIRAITIETGVLPRVHGSALFTRGETQALVSATLGTTDDAQRMESYEGEQK 373 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G + V R+ G + RA+ +V+ + + Sbjct: 374 RKFML-HYNFPPFSVGEVGRMTGVGRREIGHGA----LAWRAIEAVLPGEDESPYTLRVV 428 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GY 172 D+++++G + A + GA ++L Q LKG VA ++ G++ Y Sbjct: 429 SDILESNGSSSMATVCGASLSL-------------MQAGIPLKGSVAGVAMGLVKEGDKY 475 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSG 197 I+ D+ ED D+D T +G Sbjct: 476 AILTDIAGAEDHYGDMDFKVAGTRNG 501 >gi|313206118|ref|YP_004045295.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer DSM 15868] gi|312445434|gb|ADQ81789.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer DSM 15868] gi|315022925|gb|EFT35948.1| Polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer RA-YM] gi|325336437|gb|ADZ12711.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Riemerella anatipestifer RA-GD] Length = 711 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 14/146 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +RL GR Q+R I A GS + G+T LTT TL ++ I T+ Sbjct: 321 IRLDGRNNQQIRPIWSEVDYLPAAHGSSVFTRGETQSLTTVTLGSLMDANRIDSVI--TQ 378 Query: 56 HGW-ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 H Y P STG S R+ G Q RAL+ ++ + +I+ Sbjct: 379 HDERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQ----RALKVMIPEETPYTIRIV- 433 Query: 115 DCDVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A + +AL D Sbjct: 434 -SDILESNGSSSMATVCAGTLALMDA 458 >gi|294791724|ref|ZP_06756872.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27] gi|294456954|gb|EFG25316.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27] Length = 689 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T ++K A G+ +V +GDT +L TAT ++ ++ +T +Y G LP Sbjct: 17 TGELAKQASGAVMVGYGDTRVLVTATGSKEA----KDIDFFPLTVDYEEKMYAVGRLP-- 70 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KREA R + R+I R +R + + ++ + D Sbjct: 71 -GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAICG 126 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + GA AL +S V G +A + G + G +V+ + D++ Sbjct: 127 MIGASAAL--------------SISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLN 172 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I+ V+G AE +D ++ A + I ++ Q+D+ + Sbjct: 173 IVVAGTKDA-ILMVEGGAEE--VPEDIILEVIMAAHEEIKKIVAFQEDMTAK 221 >gi|121604326|ref|YP_981655.1| polynucleotide phosphorylase/polyadenylase [Polaromonas naphthalenivorans CJ2] gi|187610307|sp|A1VM56|PNP_POLNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120593295|gb|ABM36734.1| 3' exoribonuclease [Polaromonas naphthalenivorans CJ2] Length = 703 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 27/175 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58 R+ GR +R I + V GS L G+T L TL E+ I + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y M P +TG +GR G + +EI R+ RAL +V+ + + Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIAVLPSKEEFPYTMRV 429 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 430 VSEITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471 >gi|282600044|ref|ZP_05972801.2| polyribonucleotide nucleotidyltransferase [Providencia rustigianii DSM 4541] gi|282566848|gb|EFB72383.1| polyribonucleotide nucleotidyltransferase [Providencia rustigianii DSM 4541] Length = 685 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + + G T Sbjct: 294 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 353 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A I + + Sbjct: 354 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSHADFPYTIRVVSE 409 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A++ GA +AL D Sbjct: 410 ITESNGSSSMASVCGASLALMDA 432 >gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group] Length = 778 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR ++R I+ + A GS L G+T L TL +++ + + Sbjct: 324 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A + R+ G + RAL ++ I ++ Sbjct: 384 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 440 TITESNGSSSMASVCGGCLALQDA-------------GVPIKFPVAGIAMGLVLDTLEFG 486 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D ++G Sbjct: 487 GDGKPLILSDITGAEDASGDMDFKVAGNENG 517 >gi|326316095|ref|YP_004233767.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372931|gb|ADX45200.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 759 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58 R+ GR +R I + V GS L G+T L +TL E+ I + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ I + + Sbjct: 377 RFMFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471 >gi|89101186|ref|ZP_01174017.1| PnpA [Bacillus sp. NRRL B-14911] gi|89084095|gb|EAR63265.1| PnpA [Bacillus sp. NRRL B-14911] Length = 706 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 17/90 (18%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71 +++K A G+ L+++GDT +L+TAT K P +N +T Y G +P G Sbjct: 23 QLAKQANGAALIRYGDTAVLSTATA-SKEP---KNLDFFPLTVNYEERLYAVGKIP---G 75 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSV 101 +KRE GR ++ R+I R +R + Sbjct: 76 GFIKRE---GRPSEKAILASRLIDRPIRPL 102 >gi|225849804|ref|YP_002730038.1| polynucleotide phosphorylase/polyadenylase [Persephonella marina EX-H1] gi|257096700|sp|C0QTM3|PNP_PERMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225646061|gb|ACO04247.1| polyribonucleotide nucleotidyltransferase [Persephonella marina EX-H1] Length = 709 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 22/174 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R+ GR+ +++R I + + GS + G T TL E+ + Sbjct: 317 VRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEEQIEESIEEGEE 376 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG A S R+ G + RA+ ++ I + Sbjct: 377 KKRFMLHYNFPPFSTGEARPPRAPSRREIGHGN----LAERAIEPLIPDEEEFPYVIRVV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++++++G T A + GA ++L D M K HVA I+ G+L Sbjct: 433 SEILESNGSTSMATVCGASLSLFDAGVPM-------------KKHVAGIAMGLL 473 >gi|148251685|ref|YP_001236270.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp. BTAi1] gi|187470940|sp|A5E870|PNP_BRASB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146403858|gb|ABQ32364.1| Polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp. BTAi1] Length = 720 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 23/203 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T L TL +E+ + T Sbjct: 316 RIDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G +GR GG + +EI ++ RA+ V+ + Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRV 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 +V +++G + A + G+ +AL D ++ + + +L+G A+ +L Sbjct: 429 VSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLSDILG---- 484 Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197 ED D+D T+SG Sbjct: 485 -----DEDHLGDMDFKVAGTESG 502 >gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax benzoatilyticus JA2] gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax benzoatilyticus JA2] Length = 769 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 29/176 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I + V GS L G+T L ATL +++ + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTERDAQRIDALAGEFED 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQII 113 ++ Y M P +TG +GR G + +EI R+ RAL +V+ + Sbjct: 377 RFML-HYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVAVLPNKDEFPYTMR 428 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++ +++G + A++ G ++L D LK HVA I+ G++ Sbjct: 429 VVSEITESNGSSSMASVCGGCLSLLDA-------------GVPLKAHVAGIAMGLI 471 >gi|300087646|ref|YP_003758168.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527379|gb|ADJ25847.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 733 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 68/174 (39%), Gaps = 24/174 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+SGR ++RE+S V GS L G T +L TL E+K+ T Sbjct: 313 RVSGRGIEEIRELSAEVGVLPRVHGSALFSRGQTQILNVVTLGSLQMEQKLDNISPETSK 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +I Y P S G KR R+ G + RAL VV A + + Sbjct: 373 RYIH-HYNFPPYSVGE-TKRIGTGRREIGHGA----LAERALLPVVPSEAEFPYALRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + + ++G T A+ + ++L D +K VA IS G++ Sbjct: 427 EAVSSNGSTSMASACASSLSLMDA-------------GVPIKKPVAGISIGLIT 467 >gi|33242368|ref|NP_877309.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae TW-183] gi|33236879|gb|AAP98966.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae TW-183] Length = 694 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 8/143 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R GR +R I++ GSCL G+T L TL + +G Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G V R GR R ++ +AL + SA I I+ Sbjct: 374 SKFYLQYFFPPFSVG-EVGRIGSPGR---REIGHGKLAEKALSHALPDSATFPYTIRIES 429 Query: 117 DVIQADGGTRTAAITGAWVALHD 139 ++ +++G + A++ G +AL D Sbjct: 430 NITESNGSSSMASVCGGCLALMD 452 >gi|189220135|ref|YP_001940775.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Methylacidiphilum infernorum V4] gi|189186993|gb|ACD84178.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Methylacidiphilum infernorum V4] Length = 669 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 22/175 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR +R I++ V + GS L G+T L ATL +++ + + Sbjct: 275 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQS 334 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + S R+ G +R + + S D I + Sbjct: 335 KRFLLHYFFPPFSVGEVGRITGQSRREIGHGALAERSLLPVIPSETDF----PYAIRVSS 390 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 ++++++G T A + G +AL D LK VA IS G++ G Sbjct: 391 EILESNGSTSMATVCGGSLALMDA-------------GVPLKTSVAGISVGLVKG 432 >gi|67459113|ref|YP_246737.1| polynucleotide phosphorylase/polyadenylase [Rickettsia felis URRWXCal2] gi|75536454|sp|Q4ULK1|PNP_RICFE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|67004646|gb|AAY61572.1| Polyribonucleotide nucleotidyltransferase [Rickettsia felis URRWXCal2] Length = 747 Score = 35.8 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 20/130 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-------PMWIRNTKHGWITAEYGMLPRS 69 T ++++ A+G+ VK G++ LL TA + +K P+ I + + T G +P Sbjct: 20 TGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLTINYREMAYAT---GKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT-- 127 G KRE G+ R + R+I R +R + + + + C V+ D T Sbjct: 75 -GGFFKRE---GKASDREVLVSRLIDRPIRPLFHPAFVNETHVT--CSVLSYDPETPVDI 128 Query: 128 AAITGAWVAL 137 AI GA AL Sbjct: 129 LAIIGASAAL 138 >gi|84500513|ref|ZP_00998762.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis HTCC2597] gi|84391466|gb|EAQ03798.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis HTCC2597] Length = 712 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 21/173 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R+I + + GS L G+T L TL I + HG + Sbjct: 318 RIDGRALDQVRQIEVETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQIIDALHGNFRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAAVAGVAMGLVL 473 >gi|118602474|ref|YP_903689.1| polynucleotide phosphorylase/polyadenylase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|187611284|sp|A1AWB1|PNP_RUTMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118567413|gb|ABL02218.1| Polyribonucleotide nucleotidyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 695 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 10/145 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R+ GR +RE+ + V + GS L G+T L TL K + + Sbjct: 315 RIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKREAQLIEKLESSERQ 374 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + Y P G + R+ G + ++R I L S+ + + + Sbjct: 375 NDYFLLHYNFPPYCVGEIGRVGTTKRREIGHGRLVRRGIAACLPSIEEF----PYTVRVV 430 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 ++ +++G + A+I GA ++L D Sbjct: 431 SEITESNGSSSMASICGASLSLMDA 455 >gi|15618907|ref|NP_225193.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae CWL029] gi|15836530|ref|NP_301054.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae J138] gi|16752027|ref|NP_445393.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae AR39] gi|81789835|sp|Q9Z6R0|PNP_CHLPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|4377328|gb|AAD19136.1| Polyribonucleotide Nucleotidyltransferase [Chlamydophila pneumoniae CWL029] gi|7189766|gb|AAF38644.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae AR39] gi|8979372|dbj|BAA99206.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae J138] Length = 694 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 8/143 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R GR +R I++ GSCL G+T L TL + +G Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G V R GR R ++ +AL + SA I I+ Sbjct: 374 SKFYLQYFFPPFSVG-EVGRIGSPGR---REIGHGKLAEKALSHALPDSATFPYTIRIES 429 Query: 117 DVIQADGGTRTAAITGAWVALHD 139 ++ +++G + A++ G +AL D Sbjct: 430 NITESNGSSSMASVCGGCLALMD 452 >gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group] gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group] gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group] Length = 902 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR ++R I+ + A GS L G+T L TL +++ + + Sbjct: 448 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 507 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A + R+ G + RAL ++ I ++ Sbjct: 508 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 563 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 564 TITESNGSSSMASVCGGCLALQDA-------------GVPIKFPVAGIAMGLVLDTLEFG 610 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D ++G Sbjct: 611 GDGKPLILSDITGAEDASGDMDFKVAGNENG 641 >gi|255082324|ref|XP_002504148.1| predicted protein [Micromonas sp. RCC299] gi|226519416|gb|ACO65406.1| predicted protein [Micromonas sp. RCC299] Length = 261 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 20/184 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT--ATLEEKVPMWIRNTKHGW 58 +RL GR+ + R + ++GS + + G+T +L E + P R Sbjct: 9 LRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSE-RLEDRLL 67 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + E M STG R +R R + E+ + R + + V L Q+ + V Sbjct: 68 VKCEVSMAAFSTGERRRRTKGDRR----TNELSTFVRRCIETCVSAELLARSQLDVSIQV 123 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGG R AA+ A +A+ D M+D +A S G L P++DL+ Sbjct: 124 LQADGGVRAAAVNAAVLAIVDAGIPMQDT-------------MACCSAGYLDDTPLLDLN 170 Query: 179 YGED 182 Y E+ Sbjct: 171 YMEE 174 >gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group] Length = 865 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR ++R I+ + A GS L G+T L TL +++ + + Sbjct: 411 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 470 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A + R+ G + RAL ++ I ++ Sbjct: 471 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 526 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 527 TITESNGSSSMASVCGGCLALQDA-------------GVPIKFPVAGIAMGLVLDTLEFG 573 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D ++G Sbjct: 574 GDGKPLILSDITGAEDASGDMDFKVAGNENG 604 >gi|229495732|ref|ZP_04389460.1| polyribonucleotide nucleotidyltransferase [Porphyromonas endodontalis ATCC 35406] gi|229317306|gb|EEN83211.1| polyribonucleotide nucleotidyltransferase [Porphyromonas endodontalis ATCC 35406] Length = 737 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 12/144 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 RL GR+ ++R I + GS + G+T LTT TL E+ V + K Sbjct: 318 RLDGRKTTEIRPIWIETDCLPMPHGSAVFTRGETQSLTTVTLGTKADEKLVDDVLCRCKE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P STG + A R+ G + RAL+ ++ ++I Sbjct: 378 RFLL-HYNFPPFSTGEARPQRATGRREIGHGN----LAFRALKRMIPDEYPYVVRVI--S 430 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A + +AL D Sbjct: 431 DILESNGSSSMATVCAGTLALMDA 454 >gi|187611322|sp|A4XYD6|PNP_PSEMY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 702 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R + + V GS L G+T L ATL + +T G Sbjct: 317 RIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R + +++ I + Sbjct: 377 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRGVAAMLPKDDEFPYTIRV 429 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + VL+G A+ +L Sbjct: 430 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLTDIL 484 >gi|124266592|ref|YP_001020596.1| polynucleotide phosphorylase/polyadenylase [Methylibium petroleiphilum PM1] gi|187610284|sp|A2SFM2|PNP_METPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|124259367|gb|ABM94361.1| putative polyribonucleotide nucleotidyltransferase protein [Methylibium petroleiphilum PM1] Length = 751 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 37/180 (20%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R+ GR +R I + V GS L G+T L TL + R+T+ Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVITTLGTE-----RDTQRIDALA 371 Query: 56 ---HGWITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGS 109 Y M P +TG +GR G + +EI R+ RAL V+ + Sbjct: 372 GEFEDRFMFHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKKDEFA 424 Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 I + ++ +++G + A++ G +++ D LK HVA I+ G++ Sbjct: 425 YAIRVVSEITESNGSSSMASVCGGCLSMMDA-------------GVPLKAHVAGIAMGLI 471 >gi|325103803|ref|YP_004273457.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM 12145] gi|324972651|gb|ADY51635.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM 12145] Length = 732 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 8/144 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR Q+R I A GS + G+T LTT TL +E++ + + Sbjct: 318 VRLDGRNSKQIRPIWSEVDYLPSAHGSSIFTRGETQSLTTVTLGSNDDEQMIDGAFISGY 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y STG V R+ G + RA++ V+ I + Sbjct: 378 NRFMLHYNFPAFSTGEARPNRGVGRREVGHGN----LAMRAIKKVLPPDNENPYVIRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A + +AL D Sbjct: 434 DILESNGSSSMATVCAGTLALLDA 457 >gi|269302800|gb|ACZ32900.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae LPCoLN] Length = 694 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 8/143 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R GR +R I++ GSCL G+T L TL + +G Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G V R GR R ++ +AL + SA I I+ Sbjct: 374 SKFYLQYFFPPFSVG-EVGRIGSPGR---REIGHGKLAEKALSHALPDSATFPYTIRIES 429 Query: 117 DVIQADGGTRTAAITGAWVALHD 139 ++ +++G + A++ G +AL D Sbjct: 430 NITESNGSSSMASVCGGCLALMD 452 >gi|183600370|ref|ZP_02961863.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827] gi|188020161|gb|EDU58201.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827] Length = 722 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + + G T Sbjct: 330 RIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 389 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 390 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVMAVMPDHADFPYTVRVVSE 445 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A++ GA +AL D Sbjct: 446 ITESNGSSSMASVCGASLALMDA 468 >gi|317477841|ref|ZP_07937027.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36] gi|316905977|gb|EFV27745.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36] Length = 714 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58 RL GR+ ++R I GS + G+T L+T TL K+ I + +HG Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + +++ D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPANYPYVVRVV--SD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455 >gi|160887886|ref|ZP_02068889.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492] gi|156862572|gb|EDO56003.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492] Length = 714 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58 RL GR+ ++R I GS + G+T L+T TL K+ I + +HG Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + +++ D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPANYPYVVRVV--SD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455 >gi|87200495|ref|YP_497752.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium aromaticivorans DSM 12444] gi|123736106|sp|Q2G5F5|PNP_NOVAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|87136176|gb|ABD26918.1| Polyribonucleotide nucleotidyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 772 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 8/172 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR Q+R I GS L G+T + T TL E++ + ++ Sbjct: 315 RIDGRTTTQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTKDAEQMIDGLEGLRYE 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL V+ I I D Sbjct: 375 NFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHPVLPTKEEFPYTIRILSD 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A + G +++ D ++ + + +L+G A+ +L Sbjct: 431 ITESNGSSSMATVCGGCLSMMDAGVPVKRPVSGIAMGLILEGDKFAVLSDIL 482 >gi|153004013|ref|YP_001378338.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp. Fw109-5] gi|187470964|sp|A7H9F8|PNP_ANADF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152027586|gb|ABS25354.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp. Fw109-5] Length = 722 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 26/199 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +V+K A GS V+ GD+ +L T A +E + + + G +P G+ Sbjct: 19 TGKVAKQAHGSVWVRMGDSIVLVTVVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP---GS 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +RE GR + R++ R+ R + QII + T A+TG Sbjct: 76 FFRRE---GRPTEKETLTSRIVDRSCRPLFAEGYPNETQIIATVISFDQENDTDVLALTG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191 A ALH LS + G +A + G + G + + + + D+D Sbjct: 133 ASAALH--------------LSDIPFNGPIAGVRVGRVNGQFVANPTLAQRAEADLDV-I 177 Query: 192 VMTDSGHIVEVQGSAERAT 210 + IV V+G A+ + Sbjct: 178 MAASRDAIVMVEGGAKEVS 196 >gi|110678016|ref|YP_681023.1| polynucleotide phosphorylase/polyadenylase [Roseobacter denitrificans OCh 114] gi|123065912|sp|Q16CF6|PNP_ROSDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|109454132|gb|ABG30337.1| polyribonucleotide nucleotidyltransferase [Roseobacter denitrificans OCh 114] Length = 711 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 32/208 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR+ +++R+I + GS L G+T L TL E+ + N K Sbjct: 318 RIDGRKTDEIRDIVCETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 57 GWITAEYGMLPRSTGN--RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 ++ Y P S G RV G G R ++ RAL++V+ + + + Sbjct: 378 NFLL-HYNFPPYSVGEAGRV------GPPGRREIGHGKLAWRALQAVLPAATDFPYTVRV 430 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---- 170 ++ +++G + A++ G +++ D LK VA ++ G++ Sbjct: 431 VSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLILEEDG 477 Query: 171 GYPIV-DLDYGEDSTIDVDANFVMTDSG 197 Y I+ D+ ED D+D T++G Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTEAG 505 >gi|237743308|ref|ZP_04573789.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1] gi|229433087|gb|EEO43299.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1] Length = 703 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TL +E++ + + Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R + GR R + RALR V+ I + + Sbjct: 388 KFYLHYNFPPYSVG-EVGRMSSPGR---RELGHGSLAERALRYVIPTEEEFPYTIRVVSE 443 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 444 ITESNGSSSQASICGGSLSLMAA-------------GVPIKEHVAGIAMGLI 482 >gi|319760252|ref|YP_004124190.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia vafer str. BVAF] gi|318038966|gb|ADV33516.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia vafer str. BVAF] Length = 697 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 28/154 (18%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR ++ +REI + V GS L G+T L TL + RN ++ Sbjct: 315 LRLDGRSQDMIREIDIKIGVLPRTHGSALFTRGETQALVAVTLGTE-----RNAQN---- 365 Query: 61 AEYGMLPRSTGNRVKREAVS--------GRQGGRSQEIQRMIG------RALRSVVDLSA 106 L TG+RV R + G G +R IG R + +V+ S Sbjct: 366 -----LDELTGDRVDRFLMHYNFNPYCVGEIGIVGAPKRREIGHGRLAKRGMLAVMPDSN 420 Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140 I + ++ +++G + A+I GA +AL D Sbjct: 421 EFPYTIRVVSEITESNGSSSMASICGASLALMDA 454 >gi|319649514|ref|ZP_08003670.1| PnpA protein [Bacillus sp. 2_A_57_CT2] gi|317398676|gb|EFV79358.1| PnpA protein [Bacillus sp. 2_A_57_CT2] Length = 706 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 17/90 (18%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71 +++K A G+ LV++GDT +L+TAT K P +N +T Y G +P G Sbjct: 23 QLAKQANGAVLVRYGDTVVLSTATA-SKEP---KNLDFFPLTVNYEERLYAVGKIP---G 75 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSV 101 +KRE GR ++ R+I R +R + Sbjct: 76 GFIKRE---GRPSEKAILASRLIDRPIRPL 102 >gi|241889884|ref|ZP_04777182.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC 10379] gi|241863506|gb|EER67890.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC 10379] Length = 695 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 50/238 (21%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGNR 73 +++ A + +VK+GDT +LTTA ++ P+ + + + G +P G Sbjct: 24 MARQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAV---GKIP---GGF 77 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-------IDCDVIQADGGTR 126 ++RE GR G + R+I R +R + + Q+I DCD + A Sbjct: 78 LRRE---GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA----- 129 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDST 184 A+ + + F KG +A ++ G + G +++ ++ E ST Sbjct: 130 ---------AMLGSSLSLSVSNIPF------KGPIAGVTVGYVDGEYVINPTVEQMERST 174 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D+ +D+ ++VE G+ E S++ + + I LI+ Q+ ++ NE+ Sbjct: 175 VDLKVAGT-SDAINMVEA-GAKE---VSEEIMLNAIMFGHEEIKRLIEFQQQIV-NEI 226 >gi|126459545|ref|YP_001055823.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum calidifontis JCM 11548] gi|126249266|gb|ABO08357.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum calidifontis JCM 11548] Length = 274 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 26/239 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R + + V K A+GS VK G TH++ + P + G + Sbjct: 29 RIDGREVDQVRPVEVKTGVVKTADGSAEVKLGKTHVVAGVKIGLGQP-FPDAPDEGVLVV 87 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVD---LSALGSRQII--I 114 +LP ++ G + E+ R++ R LR VD LS G + + + Sbjct: 88 NAEVLPHASPY-----TEVGPPDEFAIELARVVDRGLRHCGYVDFKKLSVEGGKAYVLWV 142 Query: 115 DCDVIQADGG----------TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164 D VI DG V + D +++ + L+ A+ Sbjct: 143 DLYVINDDGNLVDAANLAAVAALKNAALPAVVKDETGAVKLDRNSRTPMPLDLEKAPIAV 202 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S G + +D + E+ ++D + IV +Q + +F+Q A L+LA Sbjct: 203 SVGKIANVLFLDPIFEEELSLDGRITYTFAQE-RIVAIQKTL--GSFTQQELEAALDLA 258 >gi|84684402|ref|ZP_01012303.1| polyribonucleotide nucleotidyltransferase [Maritimibacter alkaliphilus HTCC2654] gi|84667381|gb|EAQ13850.1| polyribonucleotide nucleotidyltransferase [Rhodobacterales bacterium HTCC2654] Length = 716 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 27/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +Q+R I + GS L G+T L TL +E++ + T Sbjct: 318 RIDGRALDQVRPILAEVGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALTGTYKS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVG-EVGRVGSPGR---REIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173 + +++G + A++ G +++ D + LK VA ++ G++ Y Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------AVPLKAPVAGVAMGLVLEDDGSYA 480 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ++ D+ ED D+D T++G I +Q + A + + L AKD Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKD 532 >gi|269797830|ref|YP_003311730.1| 3' exoribonuclease [Veillonella parvula DSM 2008] gi|269094459|gb|ACZ24450.1| 3' exoribonuclease [Veillonella parvula DSM 2008] Length = 689 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T ++K A G+ +V +GDT +L TAT ++ ++ +T +Y G LP Sbjct: 17 TGELAKQAGGAVMVGYGDTRVLVTATGSKEA----KDIDFFPLTVDYEEKMYAVGRLP-- 70 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KREA R + R+I R +R + + ++ + D Sbjct: 71 -GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAICG 126 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + GA AL +S V G +A + G + G +V+ + D++ Sbjct: 127 MIGASAAL--------------SISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLN 172 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I+ V+G AE +D ++ A + I ++ Q+D+ + Sbjct: 173 IVVAGTKDA-ILMVEGGAEE--VPEDIILEVIMAAHEEIKKIVAFQEDMTAK 221 >gi|90022349|ref|YP_528176.1| polynucleotide phosphorylase/polyadenylase [Saccharophagus degradans 2-40] gi|122996024|sp|Q21H65|PNP_SACD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89951949|gb|ABD81964.1| Polyribonucleotide nucleotidyltransferase [Saccharophagus degradans 2-40] Length = 722 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R + + V GS L G+T L +TL + ++ + + Sbjct: 327 RIDGRDSKTVRPLHVEVGVLPKVHGSALFTRGETQALVVSTLGSARDAQIIDALEGERKD 386 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + +R IG L D + + + Sbjct: 387 PFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGIGAVLPKEEDF----PYTMRVVSE 442 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D LK VA I+ G++ G+ + Sbjct: 443 ITESNGSSSMASVCGASLALMDA-------------GVPLKAPVAGIAMGLVKEDNGFAV 489 Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T G Sbjct: 490 LTDILGDEDHLGDMDFKVAGTADG 513 >gi|327482021|gb|AEA85331.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri DSM 4166] Length = 701 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 8/172 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + +R + L S + I + + Sbjct: 376 AFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEF----PYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ GA +AL D M+ + V +G A+ +L Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483 >gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria sp. WGA-A3] gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria sp. WGA-A3] Length = 700 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 22/151 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPM----WI 51 +R GR + +R I+ + GS L G+T L TL E+++ + Sbjct: 311 VRADGRGASDIRPITCETSILPRTHGSALFTRGETQSLAVVTLGTSDDEQRIDALEGEYF 370 Query: 52 RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ--RMIGRALRSVVDLSALGS 109 RN Y P S G EA R GR +E+ ++ RAL+SV+ Sbjct: 371 RN-----FMLHYNFPPFSVG-----EARPLRSPGR-REVGHGKLAERALKSVLPDKEAFP 419 Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDC 140 I I D+++++G + A + G +A+ D Sbjct: 420 YTIRIVSDILESNGSSSMATVCGGTLAMMDA 450 >gi|146308619|ref|YP_001189084.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina ymp] gi|145576820|gb|ABP86352.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas mendocina ymp] Length = 725 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 14/175 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R + + V GS L G+T L ATL + +T G Sbjct: 340 RIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 399 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R + +++ I + Sbjct: 400 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRGVAAMLPKDDEFPYTIRV 452 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ GA +AL D M+ + VL+G A+ +L Sbjct: 453 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLTDIL 507 >gi|167772649|ref|ZP_02444702.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM 17241] gi|167665127|gb|EDS09257.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM 17241] Length = 706 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 37/210 (17%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+ +++R ++ + GS + G T +LT ATL E + I + + Sbjct: 315 RVDGRKMDEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVATLGTISEAQKLDGIDDQEQK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111 Y S G E R GR R IG RAL V+ Sbjct: 375 RYIHHYNFPSYSVG-----ETRPSRGPGR-----REIGHGALAERALEPVIPPVEEFPYT 424 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 I + +V+ ++G T +I G+ +AL D +K VA ISCG++ Sbjct: 425 IRLVSEVLSSNGSTSQGSICGSTLALMDA-------------GVPIKRPVAGISCGLITE 471 Query: 172 ----YPIVDLDYGEDSTIDVDANFVMTDSG 197 +VD+ ED D+D T+ G Sbjct: 472 GDRWMTMVDIQGLEDFFGDMDFKVGGTEKG 501 >gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor] gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor] Length = 877 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR ++R I+ + A GS L G+T L TL +++ + Sbjct: 424 RSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTEDS 483 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G + RAL ++ I ++ Sbjct: 484 KSFYLQYSFPPSCVGEVGRIGAPSRREIGHGM----LAERALEPILPPEEDFPYTIRVES 539 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 540 TITESNGSSSMASVCGGCLALQDA-------------GVPIKFPVAGIAMGLVLDTQEFG 586 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D +SG Sbjct: 587 GDGSPLILSDITGAEDASGDMDLKIAGNESG 617 >gi|149193793|ref|ZP_01870891.1| polynucleotide phosphorylase/polyadenylase [Caminibacter mediatlanticus TB-2] gi|149135746|gb|EDM24224.1| polynucleotide phosphorylase/polyadenylase [Caminibacter mediatlanticus TB-2] Length = 725 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 12/143 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWI--RNT 54 +R GR+ +++R IS+ V A GSCL G T L AT ++ +V + + Sbjct: 341 IRADGRKLDEIRPISIETNVLPRAHGSCLFTRGQTQALAVATRGGDMDAQVYANLTDKEE 400 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 K Y + G V+ S R+ G + RA+ ++D + +++ Sbjct: 401 KLEKFMLHYNFPAFAVGEAVRLGPPSRRELGHGN----LAKRAIEPLLDPEFDETVRVV- 455 Query: 115 DCDVIQADGGTRTAAITGAWVAL 137 ++++++G + A I + +AL Sbjct: 456 -SEILESNGSSSMATICASSIAL 477 >gi|57168155|ref|ZP_00367294.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter coli RM2228] gi|57020529|gb|EAL57198.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter coli RM2228] Length = 719 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 4/138 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59 R GR N++R I++ + A GSCL G T L ATL E M T+ I Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPI 395 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + G V + G R + RAL +D + +++ +++ Sbjct: 396 NERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSIDENYPYIIRLV--SEIL 453 Query: 120 QADGGTRTAAITGAWVAL 137 +++G + A + G +AL Sbjct: 454 ESNGSSSMATVCGGSLAL 471 >gi|282848815|ref|ZP_06258208.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC 17745] gi|282581469|gb|EFB86859.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC 17745] Length = 689 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T ++K A G+ +V +GDT +L TAT ++ ++ +T +Y G LP Sbjct: 17 TGELAKQAGGAVMVGYGDTRVLVTATGSKEA----KDIDFFPLTVDYEEKMYAVGRLP-- 70 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KREA R + R+I R +R + + ++ + D Sbjct: 71 -GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAICG 126 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + GA AL +S V G +A + G + G +V+ + D++ Sbjct: 127 MIGASAAL--------------SISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLN 172 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I+ V+G AE +D ++ A + I ++ Q+D+ + Sbjct: 173 IVVAGTKDA-ILMVEGGAEE--VPEDIILEVIMAAHEEIKKIVAFQEDMTAK 221 >gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM 70294] gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM 70294] Length = 246 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 16/186 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59 +RL GR+ N++R + +A +GS ++ G+ ++T ++ P+ +R+ Sbjct: 12 LRLDGRRWNELRRFECSINTHAHASDGSSYLEQGNNKIVTLVKGPQE-PI-LRSQLDATK 69 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + + ++++R S + R E+Q + R V L I I+ V+ Sbjct: 70 ASLNITVNITKFSKMERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTLIDIEIHVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q DGG + I +AL D M D +V+AIS G+ P++D++ Sbjct: 130 QQDGGILGSLINSITLALIDSGIAMYD-------------YVSAISIGLYDTTPLLDVNT 176 Query: 180 GEDSTI 185 E++ + Sbjct: 177 LEENAM 182 >gi|146283626|ref|YP_001173779.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri A1501] gi|187611273|sp|A4VPN6|PNP_PSEU5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145571831|gb|ABP80937.1| polyribonucleotide nucleotidyltransferase [Pseudomonas stutzeri A1501] Length = 701 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 8/172 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + +R + L S + I + + Sbjct: 376 AFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEF----PYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ GA +AL D M+ + V +G A+ +L Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483 >gi|326794274|ref|YP_004312094.1| polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea MMB-1] gi|326545038|gb|ADZ90258.1| Polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea MMB-1] Length = 702 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 31/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ + K GS L G+T + T TL + ++ + Sbjct: 315 RIDGRDNQTVRPINVEVGLLKKTHGSSLFTRGETQAIATCTLGTSRDAQISDGLAGENKD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114 Y P S G GR GG +EI R+ R +++V+ I I Sbjct: 375 SFMLHYNFPPYSVGE-------CGRMGGVGRREIGHGRLARRGVQAVLPSEDEFPYTIRI 427 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---G 171 ++ +++G + A++ GA +++ D LK VA I+ G++ G Sbjct: 428 VSEITESNGSSSMASVCGASLSMMDA-------------GVPLKAPVAGIAMGLVKEDDG 474 Query: 172 YPIV-DLDYGEDSTIDVDANFVMTDSG 197 + ++ D+ ED D+D T+ G Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTEEG 501 >gi|254563353|ref|YP_003070448.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens DM4] gi|254270631|emb|CAX26635.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens DM4] Length = 748 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 16/176 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T L ATL +E+ + T Sbjct: 316 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQII 113 Y P S G +GR G GR +EI ++ RA+R V+ + I Sbjct: 376 RFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPVLPPAHEFPYTIR 427 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++ +++G + A++ G ++L D + + +L+G A+ +L Sbjct: 428 VVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLSDIL 483 >gi|218532284|ref|YP_002423100.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium chloromethanicum CM4] gi|240140844|ref|YP_002965324.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens AM1] gi|254782727|sp|B7KN55|PNP_METC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096722|sp|A9W8P8|PNP_METEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218524587|gb|ACK85172.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium chloromethanicum CM4] gi|240010821|gb|ACS42047.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens AM1] Length = 745 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 16/176 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T L ATL +E+ + T Sbjct: 316 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQII 113 Y P S G +GR G GR +EI ++ RA+R V+ + I Sbjct: 376 RFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPVLPPAHEFPYTIR 427 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++ +++G + A++ G ++L D + + +L+G A+ +L Sbjct: 428 VVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLSDIL 483 >gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius] Length = 277 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 14/151 (9%) Query: 2 RLSGRQENQM--REISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTK 55 R+ GRQ Q+ R + + + A+GS ++ G+T L+ +E K + K Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPREMERKDET---DMK 92 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 G + + P S RE S QG +++ M+ +LR V L QI ++ Sbjct: 93 SGRLMTDMRFAPFSC-----RERGSWIQGSDEKDLSLMLLESLRPGVCLHKYPRSQIEVN 147 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMED 146 V++ DG A+T A +AL D M D Sbjct: 148 VMVLENDGSVLAHAVTCASMALADAGIEMYD 178 >gi|307721696|ref|YP_003892836.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas autotrophica DSM 16294] gi|306979789|gb|ADN09824.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas autotrophica DSM 16294] Length = 726 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 9/141 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58 +R GR+ ++R I++ V A SCL G T L T+ + M+ T G Sbjct: 344 VRADGRKLTEIRPITIDTNVLPAAHSSCLFTRGQTQALVVLTMGGPKDAQMFEGLTDEGT 403 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 + + G V S G + +E+ + RAL ++DL R + Sbjct: 404 QNENFMVHYNFPGFSVGE--ASPVMGTKRRELGHGNLAKRALEPIIDLDGQTVRLV---S 458 Query: 117 DVIQADGGTRTAAITGAWVAL 137 ++++++G + A + G ++AL Sbjct: 459 EILESNGSSSMATVCGGYMAL 479 >gi|46578918|ref|YP_009726.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris str. Hildenborough] gi|120603481|ref|YP_967881.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris DP4] gi|81567122|sp|Q72ER6|PNP_DESVH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610296|sp|A1VG88|PNP_DESVV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|46448330|gb|AAS94985.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|120563710|gb|ABM29454.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris DP4] gi|311232776|gb|ADP85630.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris RCH1] Length = 760 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 9/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + + A GS L G+T L ATL ++ G +T Sbjct: 322 RIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVATLGSSTDEQRMDSLTGDVTK 381 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G VK VS R+ G + +ALR ++ L + + + Sbjct: 382 RFMLHYNFAPYCVGE-VKPVRVSRREIGHGA----LAEKALRPILPLGEDFPFTLRVVAE 436 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 ++++G + AA+ G ++L D Sbjct: 437 TMESNGSSSMAAVCGGCLSLMDA 459 >gi|237738958|ref|ZP_04569439.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 2_1_31] gi|229423558|gb|EEO38605.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 2_1_31] Length = 699 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TL +E++ + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKADEQLIDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R + RALR V+ I + + Sbjct: 384 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPSEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMSA-------------GVPIKEHVAGIAMGLI 478 >gi|262066017|ref|ZP_06025629.1| polyribonucleotide nucleotidyltransferase [Fusobacterium periodonticum ATCC 33693] gi|291380267|gb|EFE87785.1| polyribonucleotide nucleotidyltransferase [Fusobacterium periodonticum ATCC 33693] Length = 699 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TL +E++ + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKSDEQLIDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R + RALR V+ I + + Sbjct: 384 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPSEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMSA-------------GVPIKEHVAGIAMGLI 478 >gi|187251573|ref|YP_001876055.1| polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum Pei191] gi|257096702|sp|B2KDX2|PNP_ELUMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|186971733|gb|ACC98718.1| Polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum Pei191] Length = 698 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 33/223 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTAT--------LEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 V+K A+GS + + GDT +L TA + + VP+ + + + G +P G Sbjct: 25 VAKQADGSVIARMGDTMVLATAVSDKVQKPGISDFVPLTVNYKERTYAA---GKIP---G 78 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 KRE+ R + R+I R+LR + + + + + V+ ADG T Sbjct: 79 GFFKRES---RASKKETLASRIIDRSLRPL--FPSGYTCETNVTAMVLSADGVYDT---- 129 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191 + L M + S VAA+ G L G IV+ E + D+D Sbjct: 130 -------EVLAVMASSTALIISSIPFTTPVAAVRIGRLNGNFIVNPTLEEQKSCDMDLII 182 Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + G ++ V+G A+ S++ L AK I L K Q Sbjct: 183 SGSLEGMLM-VEGGAKEV--SEEDVIKALETAKPAIDILCKAQ 222 >gi|163734274|ref|ZP_02141714.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis Och 149] gi|161392282|gb|EDQ16611.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis Och 149] Length = 711 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 32/208 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR+ +++R+I + GS L G+T L TL E+ + N K Sbjct: 318 RIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 57 GWITAEYGMLPRSTGN--RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 ++ Y P S G RV G G R ++ RAL++V+ + + + Sbjct: 378 NFLL-HYNFPPYSVGEAGRV------GPPGRREIGHGKLAWRALQAVLPAATDFPYTVRV 430 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---- 170 ++ +++G + A++ G +++ D LK VA ++ G++ Sbjct: 431 VSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLILEEDG 477 Query: 171 GYPIV-DLDYGEDSTIDVDANFVMTDSG 197 Y I+ D+ ED D+D T++G Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTEAG 505 >gi|222110082|ref|YP_002552346.1| polynucleotide phosphorylase/polyadenylase [Acidovorax ebreus TPSY] gi|254782718|sp|B9MEL0|PNP_DIAST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221729526|gb|ACM32346.1| polynucleotide phosphorylase, phosphorolytic RNA-binding [Acidovorax ebreus TPSY] Length = 727 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I + V GS L G+T L +TL +++ + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +I Y M P +TG + + R+ G R+ RAL + + I + Sbjct: 377 RFIF-HYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVACLPSKDEFPYTIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 432 EITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471 >gi|163853425|ref|YP_001641468.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens PA1] gi|163665030|gb|ABY32397.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium extorquens PA1] Length = 752 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 16/176 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V A GS L G+T L ATL +E+ + T Sbjct: 323 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQII 113 Y P S G +GR G GR +EI ++ RA+R V+ + I Sbjct: 383 RFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPVLPPAHEFPYTIR 434 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + ++ +++G + A++ G ++L D + + +L+G A+ +L Sbjct: 435 VVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLSDIL 490 >gi|89070994|ref|ZP_01158217.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus HTCC2516] gi|89043457|gb|EAR49672.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus HTCC2516] Length = 710 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 30/207 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R I ++ GS L G+T L TL I + HG + Sbjct: 318 RIDGRALDEVRPIVSETQILPRTHGSALFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 377 Query: 62 E----YGMLPRSTGN--RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G RV G G R ++ RAL++V+ + I + Sbjct: 378 NFLLHYNFPPYSVGEAGRV------GPPGRREIGHGKLAWRALQAVLPPATDFPYTIRLV 431 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----G 171 ++ +++G + A++ G +++ D LK VA ++ G++ Sbjct: 432 SEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLVLEDDGS 478 Query: 172 YPIV-DLDYGEDSTIDVDANFVMTDSG 197 Y I+ D+ ED D+D T++G Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTENG 505 >gi|296120652|ref|YP_003628430.1| polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus DSM 3776] gi|296012992|gb|ADG66231.1| Polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus DSM 3776] Length = 703 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 10/145 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55 +RL GR+ + +R +S V GS L G+T L T TL ++V Sbjct: 314 VRLDGRKHDDLRAVSCAASVLPRVHGSSLFTRGETQSLATVTLGTIRDVQRVEGLFGEEA 373 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ +Y P S G R+ G +R + L S I + Sbjct: 374 KAFML-DYYFPPYSVGECKPLRGPGRRELGHGALAERSVASVLPSPEKF----PYTIRVI 428 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A++ A +AL D Sbjct: 429 SDILESNGSSSMASVCSATLALMDA 453 >gi|254471003|ref|ZP_05084406.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp. JE062] gi|211960145|gb|EEA95342.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp. JE062] Length = 712 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR + +R I + A GS L G+T + ATL +E+ + TK Sbjct: 315 RIDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVATLGTGEDEQFIDLLEGTKKA 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + R + L + D + + + Sbjct: 375 TFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVNPMLPAHHDF----PYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLI 469 >gi|85712994|ref|ZP_01044032.1| Polynucleotide phosphorylase [Idiomarina baltica OS145] gi|85693163|gb|EAQ31123.1| Polynucleotide phosphorylase [Idiomarina baltica OS145] Length = 713 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR + +R IS+ V GS L G+T L TATL + ++ + T Sbjct: 314 RIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRDAQMIDELTGTSTS 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G A R+ G R+ R +++V+ + + + Sbjct: 374 RFLLHYNFPPYCVGETGMVGAPKRREIGHG----RLAKRGIQAVMPSHEEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A++ G+ +AL D Sbjct: 430 ITESNGSSSMASVCGSSLALMDA 452 >gi|294793588|ref|ZP_06758725.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44] gi|294455158|gb|EFG23530.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44] Length = 689 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 35/232 (15%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T ++K A G+ +V +GDT +L TAT ++ ++ +T +Y G LP Sbjct: 17 TGELAKQAGGAVMVGYGDTRVLVTATGSKEA----KDIDFFPLTVDYEEKMYAVGRLP-- 70 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KREA R + R+I R +R + + ++ + D Sbjct: 71 -GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAICG 126 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + GA AL +S V G +A + G + G +V+ + D++ Sbjct: 127 MIGASAAL--------------SISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLN 172 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I+ V+G AE +D ++ A + I ++ Q+D+ + Sbjct: 173 IVVAGTKDA-ILMVEGGAEE--VPEDIILEVIMAAHEEIKKIVAFQEDMTAK 221 >gi|83313216|ref|YP_423480.1| polynucleotide phosphorylase/polyadenylase [Magnetospirillum magneticum AMB-1] gi|123754041|sp|Q2VZQ4|PNP_MAGMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|82948057|dbj|BAE52921.1| Polyribonucleotide nucleotidyltransferase [Magnetospirillum magneticum AMB-1] Length = 720 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I + V A GS L G+T L ATL +E++ + Sbjct: 315 VRIDGRDTKTVRAIEVEVGVLPRAHGSALFTRGETQALVVATLGTGQDEQIIDQLAGEYR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQI 112 Y P S G +GR G GR +EI ++ RA+R + + Sbjct: 375 EHFMLHYNFPPYSVGE-------AGRMGSPGR-REIGHGKLAWRAMRPCLPAKESFPYTM 426 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC 140 + ++ +++G + A++ G+ +AL D Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDA 454 >gi|319900855|ref|YP_004160583.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P 36-108] gi|319415886|gb|ADV42997.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P 36-108] Length = 735 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58 RL GR+ ++R I GS + G+T L+T TL K+ I + +HG Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + A + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKG--QIPADYPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455 >gi|260495072|ref|ZP_05815201.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_33] gi|260197515|gb|EEW95033.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_33] Length = 703 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 59/254 (23%), Positives = 97/254 (38%), Gaps = 35/254 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TL +E++ + + Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R + RALR V+ I + + Sbjct: 388 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPTEEEFPYTIRVVSE 443 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 444 ITESNGSSSQASICGGSLSLMAA-------------GVPIKEHVAGIAMGLIKEGEEFTV 490 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHI-----VEVQGSAE---RATFSQDH--FFAMLNLA 223 + D+ ED D+D T SG +++ G E R +Q H +L L Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARLEILELM 550 Query: 224 KDRIADLIKLQKDV 237 + I+ KL+ +V Sbjct: 551 NNTISKPAKLKSNV 564 >gi|94501380|ref|ZP_01307900.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65] gi|94426493|gb|EAT11481.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65] Length = 698 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R++++ V K GS L G+T + T TL + +V ++ + Sbjct: 319 RIDGRDNKTVRDLNIQTDVLKGTHGSALFTRGETQSIGTVTLGSTRDAQVVEFLHEVQKD 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + +R + + S+ D + + + Sbjct: 379 NFLFHYNFPPYSVGECGRMGAPGRREVGHGRLARRGVQAMMPSLEDF----PYTVRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ A +AL D +K VA I+ G++ Sbjct: 435 ITESNGSSSMASVCSASLALMDA-------------GVPIKAPVAGIAMGLV 473 >gi|299133369|ref|ZP_07026564.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2] gi|298593506|gb|EFI53706.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2] Length = 714 Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust. Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 18/229 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I V A GS L G+T L TL +E+ + T Sbjct: 315 LRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYK 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+ V+ + + Sbjct: 375 ETFLLHYNFPPFSVGETGR----IGSPGRREIGHGKLAWRAIHPVLPAHHEFPYTLRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A + G+ +AL D ++ + + +L+G A+ +L Sbjct: 431 EITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLSDILG------ 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ED D+D TD G + +Q + A +++ L AKD Sbjct: 485 ---DEDHLGDMDFKVAGTDKG-VTSLQMDIKIAGITEEIMKIALTQAKD 529 >gi|294784020|ref|ZP_06749342.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 1_1_41FAA] gi|294479832|gb|EFG27611.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 1_1_41FAA] Length = 703 Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TL +E++ + + Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKADEQLIDDLEKEYYK 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R + RALR V+ I + + Sbjct: 388 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPSEEEFPYTIRVVSE 443 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 444 ITESNGSSSQASICGGSLSLMSA-------------GVPIKEHVAGIAMGLI 482 >gi|328953964|ref|YP_004371298.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans DSM 11109] gi|328454288|gb|AEB10117.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans DSM 11109] Length = 711 Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R IS + GS L G+T L ATL E+++ +T Sbjct: 324 RIDGRSYTDIRPISCEVGLLSRTHGSALFSRGETQALAVATLGTVSDEQRIETLTGDTFK 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G S R+ G +R + R L + I + Sbjct: 384 AFML-HYNFPPYSVGETRMLRGPSRREIGHGALAERALSRVLPQPEEF----PYTIRVVS 438 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 +++ ++G + A + G +A+ D Sbjct: 439 EILSSNGSSSMATVCGGSLAMMDA 462 >gi|239816487|ref|YP_002945397.1| polynucleotide phosphorylase/polyadenylase [Variovorax paradoxus S110] gi|259534173|sp|C5CT24|PNP_VARPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|239803064|gb|ACS20131.1| Polyribonucleotide nucleotidyltransferase [Variovorax paradoxus S110] Length = 772 Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58 R+ GR +R I + V GS L G+T L TL E+ I + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGTERDAQRIDALAGEYED 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ I + + Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471 >gi|121593373|ref|YP_985269.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. JS42] gi|187470958|sp|A1W4L8|PNP_ACISJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120605453|gb|ABM41193.1| 3' exoribonuclease [Acidovorax sp. JS42] Length = 727 Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust. Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I + V GS L G+T L +TL +++ + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +I Y M P +TG + + R+ G R+ RAL + + I + Sbjct: 377 RFIF-HYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVACLPSKDEFPYTIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 432 EITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471 >gi|289766578|ref|ZP_06525956.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11] gi|289718133|gb|EFD82145.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11] Length = 703 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TL +E++ + + Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R + RALR V+ I + + Sbjct: 388 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPTEEEFPYTIRVVSE 443 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 444 ITESNGSSSQASICGGSLSLMAA-------------GVPIKEHVAGIAMGLI 482 >gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 250 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 16/153 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54 +RL GR+ N++R I A+GS ++ G+T +L + T P R + Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVT----GPHEGRQSGQRGGA 68 Query: 55 -KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K + E S R KR + R+ E++ I A V+ L I Sbjct: 69 DKQAKVEVEINFAGFSGVERRKR-----KSDKRTSEMEHCIRSAFEGVLLLHLYPHSTIT 123 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146 ++ ++ DG A I + +AL D M D Sbjct: 124 LNIHIVSQDGSLLAACINASTLALIDAGIPMTD 156 >gi|37528344|ref|NP_931689.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418115|sp|Q7MYZ0|PNP_PHOLL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|36787782|emb|CAE16897.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (PNPase) (CAP87K) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 709 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + I + G T Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVAAVMPKANEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A++ GA +AL D Sbjct: 431 ITESNGSSSMASVCGASLALMDA 453 >gi|319794672|ref|YP_004156312.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus EPS] gi|315597135|gb|ADU38201.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus EPS] Length = 775 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58 R+ GR +R I + V GS L G+T L TL E+ I + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGTERDAQRIDALAGEYED 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471 >gi|124027457|ref|YP_001012777.1| exosome complex RNA-binding protein Rrp42 [Hyperthermus butylicus DSM 5456] gi|123978151|gb|ABM80432.1| RNase PH-related exoribonuclease [Hyperthermus butylicus DSM 5456] Length = 328 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 84/223 (37%), Gaps = 26/223 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59 +RL GR+ ++ R + +T AEGS LVK G T +L + P N + Sbjct: 27 VRLDGRKLDETRPVEITPGYIDRAEGSALVKLGQTVVLAGVKTDIVAPFPDTPNEAVLVV 86 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL----GSR--Q 111 AE+ L T G + E+ R+I R+LR + V L L G + Sbjct: 87 HAEFVPLASPTFE-------PGPPDENAIELARVIDRSLREIKAVALDKLVLEPGKHVWR 139 Query: 112 IIIDCDVIQADGG---------TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162 + +D ++ DG T A+ + D S KF + V Sbjct: 140 LYVDLYILNHDGNLFDASMLAAMAALMTTRLPAAVKTEDGYTVDRS-KFTGLVPVNHKVV 198 Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205 ++ L IVD Y E+ D ++D G I +Q + Sbjct: 199 TVTIAKLSNRLIVDPTYEEEQVADTRLVVAVSDDGRIAGIQKT 241 >gi|54307819|ref|YP_128839.1| polynucleotide phosphorylase/polyadenylase [Photobacterium profundum SS9] gi|81400130|sp|Q6LUI8|PNP_PHOPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|46912242|emb|CAG19037.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium profundum SS9] Length = 707 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + ++ I K Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G + +R I + SV + + + + Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEF----PYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIV- 175 + +++G + A++ G +AL D +K VA I+ G++ G V Sbjct: 430 ITESNGSSSMASVCGTSLALMDA-------------GVPIKASVAGIAMGLVKEGDDFVV 476 Query: 176 --DLDYGEDSTIDVDANFVMTDSG 197 D+ ED D+D TD G Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG 500 >gi|221068616|ref|ZP_03544721.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni KF-1] gi|220713639|gb|EED69007.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni KF-1] Length = 747 Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I + V GS L G+T L +TL +K+ + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y M P +TG + + R+ G R+ RAL + + I + Sbjct: 377 RFLF-HYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 432 EITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471 >gi|256028665|ref|ZP_05442499.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D11] Length = 699 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR ++R + V GS L G+T L TL +E++ + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R GR R + RALR V+ I + + Sbjct: 384 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPTEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMAA-------------GVPIKEHVAGIAMGLI 478 >gi|299530738|ref|ZP_07044153.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni S44] gi|298721254|gb|EFI62196.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni S44] Length = 747 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I + V GS L G+T L +TL +K+ + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y M P +TG + + R+ G R+ RAL + + I + Sbjct: 377 RFLF-HYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 432 EITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471 >gi|264677193|ref|YP_003277099.1| 3' exoribonuclease [Comamonas testosteroni CNB-2] gi|262207705|gb|ACY31803.1| 3' exoribonuclease [Comamonas testosteroni CNB-2] Length = 747 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 23/173 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I + V GS L G+T L +TL +K+ + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y M P +TG + + R+ G R+ RAL + + I + Sbjct: 377 RFLF-HYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ++ +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 432 EITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471 >gi|138894789|ref|YP_001125242.1| polynucleotide phosphorylase/polyadenylase [Geobacillus thermodenitrificans NG80-2] gi|196247587|ref|ZP_03146289.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16] gi|187610268|sp|A4IME3|PNP_GEOTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134266302|gb|ABO66497.1| Polynucleotide phosphorylase PNPase [Geobacillus thermodenitrificans NG80-2] gi|196212371|gb|EDY07128.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16] Length = 722 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 17/128 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69 T ++K A G+ LV++GDT +L+TAT + ++ +T Y G +P Sbjct: 21 TGELAKQANGAALVRYGDTVVLSTATASREA----KDVDFFPLTVNYEERLYAVGKIP-- 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR ++ R+I R +R + Q++ + D AA Sbjct: 75 -GGFIKRE---GRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEVAA 130 Query: 130 ITGAWVAL 137 + G+ VAL Sbjct: 131 LIGSSVAL 138 >gi|329960360|ref|ZP_08298785.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT 12057] gi|328532798|gb|EGF59580.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT 12057] Length = 714 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 10/143 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58 RL GR+ ++R I GS + G+T L+T TL K+ I + +HG Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + A + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKG--QIPADYPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 +++++G + A + +AL D Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455 >gi|291276965|ref|YP_003516737.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae 12198] gi|290964159|emb|CBG40004.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae 12198] Length = 693 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 13/146 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI- 59 +R GR+ ++R IS+ + +A GS L G T L ATL + R + I Sbjct: 316 IRADGRKTTEVRPISIETNILPFAHGSVLFTRGQTQSLVVATLGSENDAQTRENLNDSIP 375 Query: 60 -----TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 T Y S G + +V R+ G A +++ D R + + Sbjct: 376 QKENFTFHYNFPGFSVGEALMIGSVGRRELGHGN-------LAKKALEDSIIEKDRTLRL 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDC 140 ++++++G + A++ G +A+ C Sbjct: 429 VSEILESNGSSSMASVCGGSLAICAC 454 >gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM 1131] gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM 1131] Length = 707 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + + G T Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 375 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDHADFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A++ GA +AL D Sbjct: 431 ITESNGSSSMASVCGASLALMDA 453 >gi|253997787|ref|YP_003049850.1| polynucleotide phosphorylase/polyadenylase [Methylovorus sp. SIP3-4] gi|313199851|ref|YP_004038509.1| polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688] gi|253984466|gb|ACT49323.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. SIP3-4] gi|312439167|gb|ADQ83273.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688] Length = 707 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 33/178 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL +E++ ++ Sbjct: 315 RIDGRNTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ------ 111 Y M P +TG +GR G +R IG + L A Q Sbjct: 375 RFMLHYNMPPYATGE-------TGRVGTPK---RREIGHGRLAKRALLAALPSQEEFGYT 424 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 I + ++ +++G + A++ G +AL D +K HVA I+ G++ Sbjct: 425 IRVVSEITESNGSSSMASVCGGCLALMDA-------------GVPVKTHVAGIAMGLI 469 >gi|297184126|gb|ADI20245.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 711 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 14/145 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR ++R I A GS + G+T LTT TL + T Sbjct: 320 RLDGRATTEVRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTL--GTSLDANRIDDATFTG 377 Query: 62 E------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 E Y P STG VS R+ G Q RAL +VD + +++ Sbjct: 378 EEKFYLHYNFPPFSTGEARPIRGVSRREIGHGNLAQ----RALYQMVDPENPFTIRVV-- 431 Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140 D+++++G + A + +A+ D Sbjct: 432 SDILESNGSSSMATVCAGTLAMMDA 456 >gi|37680881|ref|NP_935490.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus YJ016] gi|37199630|dbj|BAC95461.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus YJ016] Length = 725 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + ++ + K Sbjct: 333 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 392 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y P G + R+ G + +R I + S+ + + + + Sbjct: 393 YFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEF----PYTVRVVSE 448 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 449 ITESNGSSSMASVCGTSLALMDA-------------GVPIKASVAGIAMGLV 487 >gi|730350|sp|P41121|PNP_PHOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=CAP87K; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|561531|emb|CAA53671.1| polynucleotide phosphorylase [Photorhabdus luminescens] Length = 709 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + I + G T Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A++ GA +AL D Sbjct: 431 ITESNGSSSMASVCGASLALMDA 453 >gi|270158094|ref|ZP_06186751.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae D-4968] gi|289163641|ref|YP_003453779.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae NSW150] gi|269990119|gb|EEZ96373.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae D-4968] gi|288856814|emb|CBJ10625.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae NSW150] Length = 721 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ ++ + A GS L G+T + ATL + I + G Sbjct: 314 RIDGRDCKTVRPISIRTKLLERAHGSVLFTRGETQAIVVATLGNERDAQILDNITGESKD 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ RA+ +V+ S + + + Sbjct: 374 RFMLHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRAIMAVLPESNDFPYVLRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A + G +AL D LK VA ++ G++ Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLI 468 >gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria maculans] Length = 280 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 8/149 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHG 57 +RL GR+ N++R I A+GS ++ G+T +L + T + G Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQG 72 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + E S +R KR + R+ E++ + A V+ L I ++ Sbjct: 73 KVEVEINFAGFSGVDRRKR-----KSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIH 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED 146 +I DG A I A +AL D M D Sbjct: 128 IISQDGSLLAACINAATLALIDAGIPMSD 156 >gi|90412489|ref|ZP_01220492.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium profundum 3TCK] gi|90326526|gb|EAS42932.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium profundum 3TCK] Length = 707 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 25/204 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + ++ I K Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G + +R I + SV + + + + Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEF----PYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIV- 175 + +++G + A++ G +AL D +K VA I+ G++ G V Sbjct: 430 ITESNGSSSMASVCGTSLALMDA-------------GVPIKASVAGIAMGLVKEGDDFVV 476 Query: 176 --DLDYGEDSTIDVDANFVMTDSG 197 D+ ED D+D TD G Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG 500 >gi|330447373|ref|ZP_08311022.1| polyribonucleotide nucleotidyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491564|dbj|GAA05519.1| polyribonucleotide nucleotidyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 708 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 21/172 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + ++ + K Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y P G + R+ G + +R I + S+ + + + + Sbjct: 374 YFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEF----PYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDA-------------GVPIKASVAGIAMGLV 468 >gi|226313012|ref|YP_002772906.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis NBRC 100599] gi|254782708|sp|C0ZF43|PNP_BREBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226095960|dbj|BAH44402.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis NBRC 100599] Length = 715 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 29/208 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R GR N++R +S + GS + G T L+ TL + I + + Sbjct: 317 VRPDGRALNEIRPLSSETTILSRTHGSAMFTRGQTQALSVCTLGALGDVQILDGLGLEES 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIID 115 Y P S G EA R GR + +G RA+ ++ I + Sbjct: 377 KRFMHHYNFPPYSVG-----EARPLRPPGRREIGHGALGERAIEPIIPSEVEFPYTIRLV 431 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173 +VI+++G T A+I + +AL D +K VA I+ G++ Sbjct: 432 SEVIESNGSTSQASICASVLALMDA-------------GVPIKAPVAGIAMGLIMSKDEK 478 Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSG 197 + D+ ED D+D T++G Sbjct: 479 SFSILTDIQGMEDHLGDMDFKVAGTEAG 506 >gi|117926996|ref|YP_867613.1| polynucleotide phosphorylase/polyadenylase [Magnetococcus sp. MC-1] gi|187610282|sp|A0LE14|PNP_MAGSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117610752|gb|ABK46207.1| Polyribonucleotide nucleotidyltransferase [Magnetococcus sp. MC-1] Length = 701 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I+ + G+ L G+T + T TL +E++ + Sbjct: 318 RVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIATVTLGTSRDEQIVETLSGEYRD 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + A R+ G ++ RAL ++V + + + I + Sbjct: 378 RFYLNYTFPPYCVGETGRMGAPGRREIGHG----KLATRALTAIVPSAEVFPYTLRITSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A + GA +A+ D Sbjct: 434 ITESNGSSSMATVCGAVLAMQDA 456 >gi|328853860|gb|EGG02996.1| hypothetical protein MELLADRAFT_109732 [Melampsora larici-populina 98AG31] Length = 319 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R +R ++++ A+GSC FGD +L T +V +W KH T Sbjct: 5 RSDARTNLDIRPLTISLSTLSRADGSCNFAFGDLKVLGAMTGPAEVKVWDEKPKHA--TV 62 Query: 62 EYGMLPRST 70 E +LP S+ Sbjct: 63 EVNVLPISS 71 >gi|27365068|ref|NP_760596.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus CMCP6] gi|320155451|ref|YP_004187830.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus MO6-24/O] gi|81448563|sp|Q8DBU9|PNP_VIBVU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611443|sp|Q7MI20|PNP_VIBVY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27361214|gb|AAO10123.1| Polyribonucleotide nucleotidyltransferase [Vibrio vulnificus CMCP6] gi|319930763|gb|ADV85627.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus MO6-24/O] Length = 708 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + ++ + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y P G + R+ G + +R I + S+ + + + + Sbjct: 376 YFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEF----PYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDC 140 + +++G + A++ G +AL D Sbjct: 432 ITESNGSSSMASVCGTSLALMDA 454 >gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa] gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa] Length = 853 Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust. Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 32/211 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56 R GR +R I + + A GS L G+T L TL +K V + + Sbjct: 376 RSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 435 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G +R + L S D + ++ Sbjct: 436 KRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPSENDF----PYTVRVES 491 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170 + +++G + A++ G +AL D +K +A I+ GM+ Sbjct: 492 TITESNGSSSMASVCGGCLALQDA-------------GVPVKCMIAGIAMGMVLDTEEFG 538 Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197 G P++ D+ ED++ D+D + G Sbjct: 539 GDGTPLILSDITGSEDASGDMDFKVAGNEDG 569 >gi|256820519|ref|YP_003141798.1| polynucleotide phosphorylase/polyadenylase [Capnocytophaga ochracea DSM 7271] gi|256582102|gb|ACU93237.1| Polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea DSM 7271] Length = 735 Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 10/144 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR Q+R I A GS + G+T LTT TL E V Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G QR + R + + + + Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDCPYT------VRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDC 140 ++++++G + A + +AL D Sbjct: 432 EILESNGSSSMATVCAGTLALMDA 455 >gi|260432181|ref|ZP_05786152.1| polyribonucleotide nucleotidyltransferase [Silicibacter lacuscaerulensis ITI-1157] gi|260416009|gb|EEX09268.1| polyribonucleotide nucleotidyltransferase [Silicibacter lacuscaerulensis ITI-1157] Length = 716 Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 29/234 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR +R I + GS L G+T L TL E+ + N K Sbjct: 318 RIDGRSTTDVRPIVAETGLLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P S G V R GR R ++ RAL++V+ I + Sbjct: 378 NFLL-HYNFPPYSVG-EVGRVGPPGR---REVGHGKLAWRALQAVLPAPTDFPYTIRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172 ++ +++G + A++ G +++ D LK VA ++ G++ Y Sbjct: 433 EITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLILEEDGDY 479 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ++ D+ ED D+D T++G I +Q + A + + L AKD Sbjct: 480 AVLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKD 532 >gi|73669985|ref|YP_306000.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina barkeri str. Fusaro] gi|72397147|gb|AAZ71420.1| ribosomal RNA-processing protein RRP42 [Methanosarcina barkeri str. Fusaro] Length = 260 Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 6/98 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R+I L V AEGS V GDT +L L+ P + + G I Sbjct: 22 RQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVGVKLQPGTP-FPDSQDEGVIIT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR 99 + P ++ E G + E+ R++ R +R Sbjct: 81 NLELNPIAS-----PEFEPGPPREEAIEMARVVDRGIR 113 Searching..................................................done Results from round 2 >gi|222084657|ref|YP_002543186.1| ribonuclease PH [Agrobacterium radiobacter K84] gi|254808098|sp|B9J7T9|RNPH_AGRRK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|221722105|gb|ACM25261.1| ribonuclease PH [Agrobacterium radiobacter K84] Length = 238 Score = 365 bits (939), Expect = 2e-99, Method: Composition-based stats. Identities = 153/239 (64%), Positives = 195/239 (81%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA SG+QGGR+QEIQR+IGR+LR+VVDL LG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLKELGERQITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+AL+DCL+ ME N ++ +VLK H+AAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWIALYDCLKWME-SRNMIKVERVLKDHIAAISCGIFASQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ + DANFVMT G IVE+QG+AE FS++ F +++LAK+ IA+L++LQK I+ Sbjct: 180 EDSSAETDANFVMTGKGGIVEIQGTAEGTPFSEEEFTTLMHLAKNGIAELVELQKQAIA 238 >gi|307822918|ref|ZP_07653148.1| ribonuclease PH [Methylobacter tundripaludum SV96] gi|307735693|gb|EFO06540.1| ribonuclease PH [Methylobacter tundripaludum SV96] Length = 345 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 122/241 (50%), Positives = 166/241 (68%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R+I T +K+AEGS LV+FGDT +L TA+++ VP +++ GWIT Sbjct: 106 MRPSGRNPDQLRDIKFTCGFTKHAEGSVLVEFGDTRVLCTASVDRSVPRFLKGKGEGWIT 165 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA +G+QGGR+ EIQR+IGR+LR+ +DL ALG I+IDCDV+Q Sbjct: 166 AEYGMLPRSTHSRMGREASNGKQGGRTLEIQRLIGRSLRAAIDLKALGEHTIMIDCDVLQ 225 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL +Q M K + L G +A++S G+ G P++DLDY Sbjct: 226 ADGGTRTASITGGFVALSLAVQKM--LKRKQIKTNPLHGQIASVSVGIYNGVPVLDLDYA 283 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM D+ +EVQG+AE F ++ AML LA I +L++ Q+ I N Sbjct: 284 EDSNAETDMNVVMNDAAAFIEVQGTAEGHAFRKEELDAMLALAGSGIKELLEKQRFAIEN 343 Query: 241 E 241 Sbjct: 344 H 344 >gi|325291761|ref|YP_004277625.1| ribonuclease PH [Agrobacterium sp. H13-3] gi|325059614|gb|ADY63305.1| ribonuclease PH [Agrobacterium sp. H13-3] Length = 238 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 155/239 (64%), Positives = 193/239 (80%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRSTHERMKREASAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N ++ +VLK H+AAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-TRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ + DANFV+T SG IVEVQG+AE A FS++ F +L LAK ++L+ LQK I+ Sbjct: 180 EDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238 >gi|159184261|ref|NP_353359.2| ribonuclease PH [Agrobacterium tumefaciens str. C58] gi|21759397|sp|Q8UIG8|RNPH_AGRT5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|159139588|gb|AAK86144.2| ribonuclease PH [Agrobacterium tumefaciens str. C58] Length = 238 Score = 362 bits (930), Expect = 3e-98, Method: Composition-based stats. Identities = 156/239 (65%), Positives = 193/239 (80%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+KREA SG+QGGR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRSTNERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N ++ +VLK H+AAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-TRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ + DANFV+T SG IVEVQG+AE A FS++ F +L LAK ++L+ LQK I+ Sbjct: 180 EDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238 >gi|222147322|ref|YP_002548279.1| ribonuclease PH [Agrobacterium vitis S4] gi|254808101|sp|B9JZG3|RNPH_AGRVS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|221734312|gb|ACM35275.1| ribonuclease PH [Agrobacterium vitis S4] Length = 239 Score = 361 bits (928), Expect = 4e-98, Method: Composition-based stats. Identities = 155/240 (64%), Positives = 192/240 (80%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR+IS R SK+AEGSCLVKFGDTH+L TA+LE++ P W+RNT GW+T Sbjct: 1 MRPSGRKTDQMRKISFERNFSKHAEGSCLVKFGDTHVLCTASLEDRTPPWLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA SG+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERIKREASSGKQSGRTQEIQRLIGRSLRAVVDLEALGERQISLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N ++ +VLK HVAAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-SRNIIKVDRVLKDHVAAISCGIFAAQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + DANFVMT +G IVE+QG+AE FSQ+ F +L LA+ IA+L+ LQK I+ Sbjct: 180 EDSAAETDANFVMTGTGGIVEIQGTAEGKPFSQEEFLTLLGLAQTGIAELVDLQKQAIAG 239 >gi|256752250|ref|ZP_05493114.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1] gi|256748902|gb|EEU61942.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1] Length = 261 Score = 360 bits (926), Expect = 8e-98, Method: Composition-based stats. Identities = 121/241 (50%), Positives = 172/241 (71%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG+++AL D L + + + ++ LKG VAA+S G++ G ++DL + E Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKI--PLKGFVAAVSVGIVEGNELLDLSFQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+S+ Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEVLSDI 240 Query: 242 V 242 V Sbjct: 241 V 241 >gi|89093846|ref|ZP_01166792.1| Ribonuclease PH [Oceanospirillum sp. MED92] gi|89081976|gb|EAR61202.1| Ribonuclease PH [Oceanospirillum sp. MED92] Length = 256 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 171/239 (71%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +QMRE+ +TR +K+AEGS LV+FG+T +L TAT+E VP ++R + GW+TA Sbjct: 18 RPSGRDNDQMREVKITRNFTKHAEGSVLVEFGETKVLCTATVERGVPRFLRGSGQGWVTA 77 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGR+LR+ +DL+ LG I +DCDV+QA Sbjct: 78 EYGMLPRSTTTRNAREAAKGKQGGRTVEIQRLIGRSLRAALDLNKLGENTITLDCDVLQA 137 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ N +K +AA+S G+ G ++DLDY E Sbjct: 138 DGGTRTASITGAFVALQDAINVLKQDKNGAMKGDPIKQAIAAVSVGIFEGEAVLDLDYAE 197 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N +MT G +EVQG+AE A ++Q+ AML+LA+ I+++++LQ++ ++ Sbjct: 198 DSKAETDMNVIMTSKGGFIEVQGTAEGAPYTQEELNAMLDLARKGISEIVELQQEALAE 256 >gi|86356020|ref|YP_467912.1| ribonuclease PH [Rhizobium etli CFN 42] gi|123513255|sp|Q2KDA1|RNPH_RHIEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|86280122|gb|ABC89185.1| ribonuclease PH protein [Rhizobium etli CFN 42] Length = 239 Score = 360 bits (924), Expect = 1e-97, Method: Composition-based stats. Identities = 150/240 (62%), Positives = 193/240 (80%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG +QI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGEKQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG W+AL+DCL+ ME N ++ +VLK HVAAISCG+ ++DLDY Sbjct: 121 ADGGTRTASITGGWIALYDCLKWME-SRNMIKVDRVLKDHVAAISCGVFANQAVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + DANFVMT +G IVE+QG+AE FS++ F +++ LAK+ I +L+ LQK I+ Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFSSLMRLAKNGIGELVALQKQAIAG 239 >gi|209547618|ref|YP_002279535.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226736929|sp|B5ZMW8|RNPH_RHILW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|209533374|gb|ACI53309.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 239 Score = 359 bits (923), Expect = 1e-97, Method: Composition-based stats. Identities = 151/240 (62%), Positives = 194/240 (80%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+ GW+T Sbjct: 1 MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG W+AL+DCL+ ME N ++ +VLK HVAAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGGWIALYDCLKWME-SRNMIKVDRVLKDHVAAISCGVFASQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + DANFVMT +G IVE+QG+AE FS++ F +++ LAK+ I +L+ LQK I+ Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTSLMGLAKNGIGELVALQKQAIAG 239 >gi|303258091|ref|ZP_07344099.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47] gi|330998696|ref|ZP_08322425.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] gi|302859110|gb|EFL82193.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47] gi|329576435|gb|EGG57947.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] Length = 245 Score = 359 bits (923), Expect = 1e-97, Method: Composition-based stats. Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R I +TR +KYAEGS L++ G T ++ TA++EEKVP W+++ GW+TA Sbjct: 8 RPSGRKADELRPIKITRHYTKYAEGSVLIEVGGTKVICTASVEEKVPGWLKDQGKGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R REA G+Q GR+QEIQR+IGR+LR+VVD+ ALG R I IDCDV QA Sbjct: 68 EYGMLPRATGTRTDREAAKGKQSGRTQEIQRLIGRSLRAVVDMEALGERMIKIDCDVTQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGA+VAL D + + N LKG VAA+S G+ G P+ D DY E Sbjct: 128 DGGTRCASITGAYVALADAVNWL--IKNGSLEKSPLKGQVAALSVGIYEGVPVADFDYDE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D D N VMTD+G VE+QG+AE FS++ A+L LA+D + L Q+ ++ E Sbjct: 186 DHLSDTDMNVVMTDAGKFVELQGTAEGEPFSREDLDALLKLAEDGLKQLFAAQRAALAEE 245 >gi|167038078|ref|YP_001665656.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039210|ref|YP_001662195.1| ribonuclease PH [Thermoanaerobacter sp. X514] gi|300915534|ref|ZP_07132845.1| ribonuclease PH [Thermoanaerobacter sp. X561] gi|307267211|ref|ZP_07548716.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1] gi|307723791|ref|YP_003903542.1| ribonuclease PH [Thermoanaerobacter sp. X513] gi|320116486|ref|YP_004186645.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326390883|ref|ZP_08212434.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200] gi|226736946|sp|B0KBM5|RNPH_THEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736947|sp|B0K3T4|RNPH_THEPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166853450|gb|ABY91859.1| ribonuclease PH [Thermoanaerobacter sp. X514] gi|166856912|gb|ABY95320.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300888432|gb|EFK83583.1| ribonuclease PH [Thermoanaerobacter sp. X561] gi|306917760|gb|EFN48029.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1] gi|307580852|gb|ADN54251.1| ribonuclease PH [Thermoanaerobacter sp. X513] gi|319929577|gb|ADV80262.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993031|gb|EGD51472.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200] Length = 261 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 121/241 (50%), Positives = 172/241 (71%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG+++AL D L + + + ++ LKG VAA+S G++ G ++DL + E Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKI--PLKGFVAAVSVGIVEGNELLDLSFQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+S+ Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEVLSDI 240 Query: 242 V 242 V Sbjct: 241 V 241 >gi|15964129|ref|NP_384482.1| ribonuclease PH [Sinorhizobium meliloti 1021] gi|307301274|ref|ZP_07581036.1| ribonuclease PH [Sinorhizobium meliloti BL225C] gi|307317945|ref|ZP_07597382.1| ribonuclease PH [Sinorhizobium meliloti AK83] gi|21759408|sp|Q92SK2|RNPH_RHIME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|15073305|emb|CAC41813.1| Probable ribonuclease PH protein [Sinorhizobium meliloti 1021] gi|306896347|gb|EFN27096.1| ribonuclease PH [Sinorhizobium meliloti AK83] gi|306903730|gb|EFN34317.1| ribonuclease PH [Sinorhizobium meliloti BL225C] Length = 239 Score = 358 bits (920), Expect = 3e-97, Method: Composition-based stats. Identities = 154/240 (64%), Positives = 195/240 (81%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLV+FGDTH+L TA+LEEKVP W+RN GWIT Sbjct: 1 MRPSGRKTDQMRKVSFERSFSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATGERMRREAATGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N +L +VLK HVAAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMVKLEKVLKDHVAAISCGIFANQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + DANFVMT SG +VE+QG+AE FS++ F +++ LAK+ IA+L+++QK I+ Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELVEMQKQAIAG 239 >gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62] gi|254040307|gb|ACT57103.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 358 bits (920), Expect = 4e-97, Method: Composition-based stats. Identities = 242/242 (100%), Positives = 242/242 (100%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT Sbjct: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ Sbjct: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG Sbjct: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN Sbjct: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 Query: 241 EV 242 EV Sbjct: 241 EV 242 >gi|227820597|ref|YP_002824567.1| ribonuclease PH [Sinorhizobium fredii NGR234] gi|254808598|sp|C3MEJ1|RNPH_RHISN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|227339596|gb|ACP23814.1| ribonuclease PH [Sinorhizobium fredii NGR234] Length = 239 Score = 357 bits (917), Expect = 7e-97, Method: Composition-based stats. Identities = 153/240 (63%), Positives = 193/240 (80%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLV+FGDTH+L TA+LE+KVP W+RN GWIT Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASLEDKVPAWLRNGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATGERMRREASTGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N ++ +VLK HVAAISCG+ +VDLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMIKVERVLKDHVAAISCGIFANQAVVDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + DANFVMT SG +VE+QG+AE FS++ F +++ LAKD IA+L+ LQK ++ Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMQLAKDGIAELVALQKQAVAG 239 >gi|20807113|ref|NP_622284.1| RNase PH [Thermoanaerobacter tengcongensis MB4] gi|22096086|sp|Q8RC30|RNPH_THETN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|20515606|gb|AAM23888.1| RNase PH [Thermoanaerobacter tengcongensis MB4] Length = 261 Score = 357 bits (917), Expect = 8e-97, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 170/239 (71%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R RE GR GR+ EIQR+IGR+LR+VVDL ALG R I IDCDVIQA Sbjct: 63 EYGMLPRATEVRNPREVTKGRPSGRTMEIQRLIGRSLRAVVDLEALGERTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG+++AL D L + + ++ LK VAA+S G++ G ++DL + E Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGELQKI--PLKSFVAAVSVGIVEGNKLLDLSFQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ VD N VMTD G IVE+QG+ E FS+ +F +L+LA I +IK+QK+V+S+ Sbjct: 181 DANALVDMNVVMTDKGEIVEIQGTGEGGPFSRQNFEELLDLAAHGIEQIIKIQKEVLSD 239 >gi|254448548|ref|ZP_05062008.1| ribonuclease PH [gamma proteobacterium HTCC5015] gi|198261931|gb|EDY86216.1| ribonuclease PH [gamma proteobacterium HTCC5015] Length = 240 Score = 357 bits (916), Expect = 9e-97, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R++ LTR+ + +AEGS LV+FG+T ++ TA++EE+VP +++ GW+TA Sbjct: 4 RPSGRQADQLRDVRLTRQYTCHAEGSVLVEFGNTKVICTASVEERVPPFLKGQGQGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+ +DL ALG RQI +DCDVIQA Sbjct: 64 EYGMLPRSTGSRMGREAARGKQSGRTQEIQRLIGRSLRAAIDLEALGERQITLDCDVIQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + ++ L G VA+IS G+ G P++DLDY E Sbjct: 124 DGGTRTASITGAFVALTDAVNQL--INDGKLSKSPLLGQVASISVGIYEGTPVLDLDYPE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VM D+GH +EVQG+AE F ++ +L+LA I +L ++QK ++ Sbjct: 182 DSNAETDMNVVMNDAGHFIEVQGTAEGHAFRREELNQLLDLADKGIRELFEVQKAALAK 240 >gi|297544117|ref|YP_003676419.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841892|gb|ADH60408.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 259 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 119/237 (50%), Positives = 169/237 (71%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG+++AL D L + + + ++ LKG VAA+S G++ G ++DL + E Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKI--PLKGFVAAVSVGIVDGNKLLDLSFQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+ Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEVL 237 >gi|90420650|ref|ZP_01228556.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1] gi|90334941|gb|EAS48702.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1] Length = 241 Score = 356 bits (915), Expect = 1e-96, Method: Composition-based stats. Identities = 145/239 (60%), Positives = 187/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R S++AEGSCLV+FGDTH+L TA+LEE+VP W++N+ GW+T Sbjct: 1 MRPSKRAFDELRPVSLERNYSRHAEGSCLVRFGDTHVLCTASLEERVPGWLKNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R++REA SG+Q GR+QEIQR++GR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGDRMRREAASGKQSGRTQEIQRLVGRSLRAVVDLQALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VAL DCL M + ++VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGYVALADCLAWMGQRA-MVDPAKVLKDHVAAISCGIYKGEPVLDLDYP 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT +G IVE+QG+AE FSQD F +L+LA+ I DL+ +Q+ I Sbjct: 180 EDSAAETDANFVMTGAGGIVEIQGTAEGTPFSQDEFLKLLDLARKGINDLVGMQRQAIE 238 >gi|157963655|ref|YP_001503689.1| ribonuclease PH [Shewanella pealeana ATCC 700345] gi|189043776|sp|A8H9B7|RNPH_SHEPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157848655|gb|ABV89154.1| ribonuclease PH [Shewanella pealeana ATCC 700345] Length = 237 Score = 356 bits (915), Expect = 1e-96, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T Sbjct: 1 MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+QEIQR+IGR+LR+ VD+ LG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + ++L+LAK I +++ +QK +S Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDIQKASLS 237 >gi|330447145|ref|ZP_08310795.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491336|dbj|GAA05292.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 238 Score = 356 bits (915), Expect = 1e-96, Method: Composition-based stats. Identities = 128/240 (53%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRSANQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+QGGR+ EIQR+I R+LR+ VDL LG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + +M + LKG VAA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGAMVALVDAINYMLE--KGMIKKNPLKGMVAAVSVGIYNGEPICDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD I+D+I +QK + N Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKQALEN 238 >gi|190890032|ref|YP_001976574.1| ribonuclease PH protein [Rhizobium etli CIAT 652] gi|218516544|ref|ZP_03513384.1| ribonuclease PH [Rhizobium etli 8C-3] gi|226736928|sp|B3PZA2|RNPH_RHIE6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|190695311|gb|ACE89396.1| ribonuclease PH protein [Rhizobium etli CIAT 652] Length = 239 Score = 356 bits (915), Expect = 1e-96, Method: Composition-based stats. Identities = 149/240 (62%), Positives = 193/240 (80%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LE+K P W+RNT GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEDKTPPWLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG W+AL+DCL+ ME N ++ +VLK HVAAISCG+ ++DLDY Sbjct: 121 ADGGTRTASITGGWIALYDCLKWME-SRNMIKVDRVLKDHVAAISCGVFASQAVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + DANFVMT +G IVE+QG+AE F+++ F +++ LAK+ I +L+ LQK I+ Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFTEEEFTSLMGLAKNGIGELVALQKQAIAG 239 >gi|107104436|ref|ZP_01368354.1| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2] Length = 239 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 125/239 (52%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGATVALIDALAVLKKRGAL--KGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMTD+G +EVQG+AE A F D AML LA+ + +L +LQ+ ++ Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPDELNAMLELAQQGMQELFELQRAALAE 239 >gi|152984751|ref|YP_001351426.1| ribonuclease PH [Pseudomonas aeruginosa PA7] gi|166228301|sp|A6VEE1|RNPH_PSEA7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|150959909|gb|ABR81934.1| ribonuclease PH [Pseudomonas aeruginosa PA7] Length = 239 Score = 355 bits (913), Expect = 2e-96, Method: Composition-based stats. Identities = 125/239 (52%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGATVALIDALAVLKKRGAL--KGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMTDSG +EVQG+AE A F AML LA+ + +L +LQ+ ++ Sbjct: 181 DSAAETDLNVVMTDSGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239 >gi|13473880|ref|NP_105448.1| ribonuclease PH [Mesorhizobium loti MAFF303099] gi|21759410|sp|Q98DN6|RNPH_RHILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|14024631|dbj|BAB51234.1| ribonuclease PH [Mesorhizobium loti MAFF303099] Length = 238 Score = 355 bits (912), Expect = 3e-96, Method: Composition-based stats. Identities = 152/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+ GW+T Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG WVAL+DCL+ ME +S+VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMASVSKVLKDHVAAISCGIHDGQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT G IVE+QG+AE FS+D F ++ LAK I L+ LQ+ ++ Sbjct: 180 EDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEDQFAELMGLAKKGIQRLVSLQQMAVA 238 >gi|299066246|emb|CBJ37430.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum CMR15] Length = 238 Score = 355 bits (912), Expect = 3e-96, Method: Composition-based stats. Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR +++AEGS LV FGDTH+L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + M + ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAHDAISVMRKKGQL--AGEPIRDFVAAVSVGVVDGVPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ D D N VMT +G VEVQG+AE F++ A+L LA I LI LQK + Sbjct: 179 EDSSCDTDMNVVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQALG 237 >gi|241202761|ref|YP_002973857.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856651|gb|ACS54318.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 239 Score = 355 bits (912), Expect = 3e-96, Method: Composition-based stats. Identities = 150/240 (62%), Positives = 192/240 (80%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT GW+T Sbjct: 1 MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG W+AL+DCL+ ME N ++ +VLK HVAAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGGWIALYDCLKWME-SRNMIKVERVLKDHVAAISCGIFASQPVIDLDYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + DANFVMT +G IVE+QG+AE FS+ F +++ LA++ I +L+ LQK + Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAVEG 239 >gi|150395238|ref|YP_001325705.1| ribonuclease PH [Sinorhizobium medicae WSM419] gi|166228322|sp|A6U5E0|RNPH_SINMW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|150026753|gb|ABR58870.1| ribonuclease PH [Sinorhizobium medicae WSM419] Length = 239 Score = 355 bits (912), Expect = 3e-96, Method: Composition-based stats. Identities = 153/240 (63%), Positives = 195/240 (81%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLV+FGDTH+L TA+LE+KVP W+RN GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASLEDKVPGWLRNGGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMRREASAGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL+ ME N +L +VLK HVAAISCG+ P+VDLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMVKLEKVLKDHVAAISCGIFASQPVVDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + DANFVMT SG +VE+QG+AE FS++ F +++ LAK+ IA+LI++QK I+ Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELIEMQKLAIAG 239 >gi|116250149|ref|YP_765987.1| ribonuclease PH [Rhizobium leguminosarum bv. viciae 3841] gi|166228307|sp|Q1MMD1|RNPH_RHIL3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|115254797|emb|CAK05871.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 239 Score = 355 bits (912), Expect = 3e-96, Method: Composition-based stats. Identities = 150/240 (62%), Positives = 192/240 (80%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT GW+T Sbjct: 1 MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG W+AL+DCL+ ME N ++ +VLK HVAAISCG+ P++DLDY Sbjct: 121 ADGGTRTASITGGWIALYDCLKWME-SRNMIKVDRVLKDHVAAISCGIFASQPVIDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + DANFVMT +G IVE+QG+AE FS+ F +++ LA++ I +L+ LQK + Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAVEG 239 >gi|295677344|ref|YP_003605868.1| ribonuclease PH [Burkholderia sp. CCGE1002] gi|295437187|gb|ADG16357.1| ribonuclease PH [Burkholderia sp. CCGE1002] Length = 245 Score = 355 bits (912), Expect = 3e-96, Method: Composition-based stats. Identities = 129/238 (54%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ NQ+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVSESVPPFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R I +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTINLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVARL--LATGRIESSPITDYVAAISVGVYDGVPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VE+QG+AE FS++ A+L+LA D I+ LI QK+ + Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGISTLIAKQKEALG 242 >gi|71553993|gb|AAZ33204.1| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A] Length = 294 Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 57 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 116 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 117 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 176 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA+S GM G P++DLDY E Sbjct: 177 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPE 235 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++ Sbjct: 236 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 294 >gi|304317496|ref|YP_003852641.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778998|gb|ADL69557.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 259 Score = 355 bits (911), Expect = 4e-96, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I +TR ++YAEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RVDGRDPKSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+T R +RE+ G+Q GR+ EIQR+IGRALR+VVDL ALG + I IDCDVIQA Sbjct: 63 EYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG++VAL D + + +K VAA+S G++ ++DL Y E Sbjct: 123 DGGTRTASITGSFVALVDAMNKL--LQKGVISKMPIKSFVAAVSVGIVGDNKLLDLCYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D VD N VMTD G +E+QG+ E FS+D F +L LA+D + +I++QK+ + + Sbjct: 181 DCNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKDDFTELLGLAEDGLNKIIEIQKEALGD 239 >gi|167586475|ref|ZP_02378863.1| ribonuclease PH [Burkholderia ubonensis Bu] Length = 246 Score = 355 bits (911), Expect = 4e-96, Method: Composition-based stats. Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADELRKVTLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ARSPITDHVAAISVGVFDGTPVLDLDYPE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+D A+L+LA+ I L++LQKD + Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRDEMNALLDLAQSGIGQLVRLQKDALG 242 >gi|110636340|ref|YP_676548.1| ribonuclease PH [Mesorhizobium sp. BNC1] gi|122965408|sp|Q11B42|RNPH_MESSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110287324|gb|ABG65383.1| RNAse PH [Chelativorans sp. BNC1] Length = 238 Score = 354 bits (910), Expect = 4e-96, Method: Composition-based stats. Identities = 150/239 (62%), Positives = 186/239 (77%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ ++MR IS R VSK+AEGSCLV+FGDTH+L TA+LEEKVP W+RN+ GW+T Sbjct: 1 MRPSRRQPDEMRAISFERGVSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA SG+QGGR+ EIQR++GR+LRSV+DL ALG QI +DCDV+Q Sbjct: 61 AEYGMLPRSTGERMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VALHDCL M + +VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGFVALHDCLSWM-QARQMVTVERVLKDHVAAISCGIYDGTPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G IVE+QG+AE A F+++ F +L LA+ I L++LQK +S Sbjct: 180 EDSAAETDANFVMTGKGGIVEIQGTAEGAPFTEEEFHELLRLARKGIFRLVELQKMAVS 238 >gi|212635008|ref|YP_002311533.1| ribonuclease PH [Shewanella piezotolerans WP3] gi|226736939|sp|B8CM22|RNPH_SHEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|212556492|gb|ACJ28946.1| Ribonuclease PH [Shewanella piezotolerans WP3] Length = 237 Score = 354 bits (910), Expect = 4e-96, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T Sbjct: 1 MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ LG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++E+QG+AE F+ + ++L+LAK I +++ +QK +S Sbjct: 179 EDSAAETDMNVVMTETGKMIEIQGTAEGEPFTHEELLSLLDLAKHGIREIVDIQKASLS 237 >gi|269103912|ref|ZP_06156609.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP 102761] gi|268163810|gb|EEZ42306.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP 102761] Length = 238 Score = 354 bits (910), Expect = 5e-96, Method: Composition-based stats. Identities = 125/240 (52%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRSASQVRPITITRQFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+ VDL LG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + +M + LK VAA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGAMVALVDAIHYMLE--KGMIKKNPLKTMVAAVSVGIYNGEPICDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++E+QG+AE FS + AML LAK+ I ++I QK ++N Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKEGINEIIAQQKQALAN 238 >gi|15600527|ref|NP_254021.1| ribonuclease PH [Pseudomonas aeruginosa PAO1] gi|116053481|ref|YP_793808.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14] gi|218894437|ref|YP_002443307.1| ribonuclease PH [Pseudomonas aeruginosa LESB58] gi|254237972|ref|ZP_04931295.1| ribonuclease PH [Pseudomonas aeruginosa C3719] gi|254243780|ref|ZP_04937102.1| ribonuclease PH [Pseudomonas aeruginosa 2192] gi|296392194|ref|ZP_06881669.1| ribonuclease PH [Pseudomonas aeruginosa PAb1] gi|313106761|ref|ZP_07792977.1| ribonuclease PH [Pseudomonas aeruginosa 39016] gi|12230959|sp|P50597|RNPH_PSEAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|122256498|sp|Q02E28|RNPH_PSEAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736925|sp|B7V5M5|RNPH_PSEA8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|46015434|pdb|1R6M|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Pseudomonas Aeruginosa In Complex With Phosphate gi|9951653|gb|AAG08719.1|AE004946_3 ribonuclease PH [Pseudomonas aeruginosa PAO1] gi|115588702|gb|ABJ14717.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14] gi|126169903|gb|EAZ55414.1| ribonuclease PH [Pseudomonas aeruginosa C3719] gi|126197158|gb|EAZ61221.1| ribonuclease PH [Pseudomonas aeruginosa 2192] gi|218774666|emb|CAW30483.1| ribonuclease PH [Pseudomonas aeruginosa LESB58] gi|310879479|gb|EFQ38073.1| ribonuclease PH [Pseudomonas aeruginosa 39016] Length = 239 Score = 354 bits (910), Expect = 5e-96, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGATVALIDALAVLKKRGAL--KGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMTD+G +EVQG+AE A F AML LA+ + +L +LQ+ ++ Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239 >gi|71278026|ref|YP_266880.1| ribonuclease PH [Colwellia psychrerythraea 34H] gi|123634261|sp|Q48AN3|RNPH_COLP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|71143766|gb|AAZ24239.1| ribonuclease PH [Colwellia psychrerythraea 34H] Length = 237 Score = 354 bits (910), Expect = 5e-96, Method: Composition-based stats. Identities = 129/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R +++TR+ + +AEGS L++FGDT ++ TAT+E VP +++ GW+T Sbjct: 1 MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVPRFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA SG+Q GR+ EI R+I RALR+ VDL ALG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L +M + + LK +AA+S G+ G P+ DLDY Sbjct: 121 ADGGTRTAAITGACVALVDALNYMR--AKDIIKTNPLKHMIAAVSVGIYKGEPVADLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMTD+G ++EVQG+AE FS + AML LAK+ I +L LQK +S Sbjct: 179 EDSAADTDMNVVMTDTGKLIEVQGTAEEEPFSFEEMQAMLELAKNGINELFDLQKAALS 237 >gi|17546878|ref|NP_520280.1| ribonuclease PH [Ralstonia solanacearum GMI1000] gi|21759400|sp|Q8XXF5|RNPH_RALSO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|17429178|emb|CAD15866.1| probable ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein [Ralstonia solanacearum GMI1000] Length = 238 Score = 354 bits (910), Expect = 5e-96, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR +++AEGS LV FGDTH+L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + M + ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAHDAISVMRKKGQL--TGEPIRDFVAAVSVGVVDGVPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED++ D D N VMT +G VEVQG+AE F++ A+L LA I LI LQK + Sbjct: 179 EDASCDTDMNIVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADHGIRTLIGLQKQALG 237 >gi|110799614|ref|YP_696926.1| ribonuclease PH [Clostridium perfringens ATCC 13124] gi|123344527|sp|Q0TN64|RNPH_CLOP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110674261|gb|ABG83248.1| ribonuclease PH [Clostridium perfringens ATCC 13124] Length = 248 Score = 354 bits (910), Expect = 6e-96, Method: Composition-based stats. Identities = 113/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R +RE + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q Sbjct: 61 AEYNMLPRSTQSRKQREINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG++VAL D + + K ++ V+A+S G++ ++DL Y Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQ--KKPFNVYPIRHFVSAVSVGIVGEEKVLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED VD N VMT+ G +E+QG+ E FS+ +LNLA+ +I+ QKD + Sbjct: 179 EDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALKT 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|291612874|ref|YP_003523031.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1] gi|291582986|gb|ADE10644.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1] Length = 238 Score = 354 bits (909), Expect = 7e-96, Method: Composition-based stats. Identities = 125/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R I +TR +K+AEGS L++ GDT ++ TA++EE+VP + + GW+T Sbjct: 1 MRPSQRKHDQLRAIRITRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R+ REA G+Q GR+QEIQR+IGR+LR+VVDL LG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMSREAAKGKQSGRTQEIQRLIGRSLRAVVDLGKLGERTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + LK VAAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVALSDAVAALMQ--QGLVKENPLKHAVAAISVGIYQGIPVLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VM +GH VEVQG+AE FS++ +L LAK I L+ +Q+ + Sbjct: 179 EDSDCDTDMNVVMLGNGHFVEVQGTAEGHAFSREEMDTLLELAKHGITQLVAMQQKAL 236 >gi|289577832|ref|YP_003476459.1| ribonuclease PH [Thermoanaerobacter italicus Ab9] gi|289527545|gb|ADD01897.1| ribonuclease PH [Thermoanaerobacter italicus Ab9] Length = 261 Score = 354 bits (908), Expect = 9e-96, Method: Composition-based stats. Identities = 121/241 (50%), Positives = 172/241 (71%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R I +TR +K+AEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R RE GR GR+ EIQR+IGR+LRSVVDL LG + I IDCDVIQA Sbjct: 63 EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG+++AL D L + + + ++ LKG VAA+S G++ G ++DL + E Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDISKI--PLKGFVAAVSVGIVDGNKLLDLSFQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS VD N VMTD G IVE+QG+ E F++ + +L+LA+ I +IK+QK+V+S+ Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEVLSDI 240 Query: 242 V 242 V Sbjct: 241 V 241 >gi|297537277|ref|YP_003673046.1| ribonuclease PH [Methylotenera sp. 301] gi|297256624|gb|ADI28469.1| ribonuclease PH [Methylotenera sp. 301] Length = 243 Score = 354 bits (908), Expect = 9e-96, Method: Composition-based stats. Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R NQ+R + + R +K+AEGS LVKFGDTH+L TA++EEKVP +++ GW+TA Sbjct: 7 RPSQRANNQLRNVEIIRHYTKHAEGSVLVKFGDTHVLCTASVEEKVPGFLKGKGQGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I +DCDVIQA Sbjct: 67 EYGMLPRSTGSRMDREAAKGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIHMDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VALHD + + N + LK VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAYVALHDAISTL--LKNGKLTTSPLKQGVAAISVGVYKGTPVLDLDYIE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT G VE+QG+AE FS+D AML+LA I L+ Q +V+S Sbjct: 185 DSDCDTDMNVVMTADGGFVEIQGTAEGEPFSRDAMNAMLDLAAHGIKQLVIKQNEVLS 242 >gi|300690924|ref|YP_003751919.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum PSI07] gi|299077984|emb|CBJ50625.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum PSI07] Length = 238 Score = 354 bits (908), Expect = 9e-96, Method: Composition-based stats. Identities = 129/239 (53%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR +++AEGS LV FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGENTIHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + M + ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAHDAVSVMR--GRGLLAGEPIRDFVAAVSVGVVDGAPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG VEVQG+AE F++ A+L LA I LI LQK + Sbjct: 179 EDSACDTDMNVVMTGSGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQALG 237 >gi|59710718|ref|YP_203494.1| ribonuclease PH [Vibrio fischeri ES114] gi|75431903|sp|Q5E8P0|RNPH_VIBF1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|59478819|gb|AAW84606.1| ribonuclease PH [Vibrio fischeri ES114] Length = 238 Score = 354 bits (908), Expect = 9e-96, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I+LTR + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + HM + S +KGHVAA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGASVALADAINHM--IATGKLKSNPMKGHVAAVSVGIYNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VM + G ++EVQG+AE A FS ML LA+ I D+I+ QK ++ Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238 >gi|197333899|ref|YP_002154880.1| ribonuclease PH [Vibrio fischeri MJ11] gi|226736949|sp|B5FFE2|RNPH_VIBFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|197315389|gb|ACH64836.1| ribonuclease PH [Vibrio fischeri MJ11] Length = 238 Score = 353 bits (907), Expect = 1e-95, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I+LTR + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + HM + S +KGHVAA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGASVALADAINHM--IATGKLKSNPMKGHVAAVSVGIYNGEAICDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VM + G ++EVQG+AE A FS ML LA+ I D+I+ QK ++ Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238 >gi|320010557|gb|ADW05407.1| ribonuclease PH [Streptomyces flavogriseus ATCC 33331] Length = 245 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 119/241 (49%), Positives = 159/241 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAAIS G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIAWAQGKKIVKHGRKPLTGTVAAISVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D + D N V T G VEVQG+AE F +D A+L+LA ADL KLQ++ ++ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRDELNALLDLATAGCADLAKLQEEALART 242 Query: 242 V 242 + Sbjct: 243 L 243 >gi|330505631|ref|YP_004382500.1| ribonuclease PH [Pseudomonas mendocina NK-01] gi|328919917|gb|AEB60748.1| ribonuclease PH [Pseudomonas mendocina NK-01] Length = 239 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALIDALKVLKKRGAL--KGEPLKQMIAAVSVGIYQGEPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT++G +EVQG+AE A F D F AML LA+ + ++ +LQK + + Sbjct: 181 DSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPDEFNAMLALAQKGMNEIFELQKAALVD 239 >gi|126666552|ref|ZP_01737530.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17] gi|126628940|gb|EAZ99559.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17] Length = 238 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 131/240 (54%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q R+I +TR +++AEGS L++FGDT ++ TA++E KVP ++R GWIT Sbjct: 1 MRPSGRTPEQPRDIRITRNYTRHAEGSVLIEFGDTKVICTASVENKVPPFLRGEGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTNSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKALGEHTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG VAL D L + + K LK VAA+S G+ G P+VDLDY Sbjct: 121 ADGGTRTAAITGGCVALVDALNFL--VAQKRLKKSPLKQMVAAVSVGVFKGKPVVDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMTD G +E+QG+AE A F+Q+ +ML LAK I L LQ + ++ Sbjct: 179 EDSVAETDMNVVMTDKGGFIEIQGTAEGAPFAQEELDSMLVLAKQGIETLFALQNEALNG 238 >gi|319780511|ref|YP_004139987.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166399|gb|ADV09937.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 238 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 150/239 (62%), Positives = 187/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+ GW+T Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG WVAL+DCL+ ME +++VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMASVAKVLKDHVAAISCGIHDGQPVIDLDYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT G IVE+QG+AE FS++ F ++ LAK I L+ LQ+ ++ Sbjct: 180 EDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEEQFADLMGLAKKGIQRLVSLQQMAVA 238 >gi|149376205|ref|ZP_01893970.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893] gi|149359610|gb|EDM48069.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893] Length = 238 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 131/240 (54%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q R+I +TR +++AEGS LV+FGDT ++ TA++E KVP ++R GWIT Sbjct: 1 MRPSGRTPEQPRDIRITRHYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDLSALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLSALGEHSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG VAL D L H+ + LK +AA S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGCVALVDALNHLVKEGRL--KTSPLKQMIAAFSVGVYKGTPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N +MTD G +E+QG+AE A F Q+ ML LAK I L + QK ++ Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQEELDGMLKLAKLGIGQLFEAQKAALAQ 238 >gi|256823650|ref|YP_003147613.1| ribonuclease PH [Kangiella koreensis DSM 16069] gi|256797189|gb|ACV27845.1| ribonuclease PH [Kangiella koreensis DSM 16069] Length = 238 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R I++TR+ +K+AEGS L++FG+T +L A++ + VP +++ GWIT Sbjct: 1 MRPSGRTSNQLRPITITRQFTKHAEGSVLIEFGETKVLCNASVVDNVPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ VDLS LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRMDREASRGKQGGRTLEIQRLIGRSLRAAVDLSQLGENTIYVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA +ALHD L HM + LK V ++S G+ G PI+DLDY Sbjct: 121 ADGGTRTASISGASIALHDALFHMRKTG--MIKTNPLKHMVGSVSVGIYKGTPILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM ++G +E+QG+AE TF+ D ML L K I ++ LQ ++ Sbjct: 179 EDSAAETDMNLVMDENGGFIEIQGTAEGETFTGDELMQMLELGKQGIREIFDLQHKAVA 237 >gi|221135142|ref|ZP_03561445.1| RNase PH (tRNA nucleotidyltransferase) [Glaciecola sp. HTCC2999] Length = 238 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R +++TR + +AEGS LV+FG+T ++ AT+EE VP +++ GWIT Sbjct: 1 MRPSGRTANQIRPVTITRHFTCHAEGSVLVEFGNTKVICNATVEEGVPRFMKGKGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYSMLPRATHSRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L HM S + LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTHMR--SKGILKANPLKHMIAALSVGVYKGNAIADLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT++G ++EVQG+AE FS + ML+LAK + +L +QK ++N Sbjct: 179 EDSDAETDMNVVMTETGKLIEVQGTAEGEPFSFEEMSEMLDLAKHGLRELFDIQKTALNN 238 >gi|18311236|ref|NP_563170.1| ribonuclease PH [Clostridium perfringens str. 13] gi|168205082|ref|ZP_02631087.1| ribonuclease PH [Clostridium perfringens E str. JGS1987] gi|168211260|ref|ZP_02636885.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626] gi|168216782|ref|ZP_02642407.1| ribonuclease PH [Clostridium perfringens NCTC 8239] gi|169347042|ref|ZP_02865984.1| ribonuclease PH [Clostridium perfringens C str. JGS1495] gi|182625546|ref|ZP_02953317.1| ribonuclease PH [Clostridium perfringens D str. JGS1721] gi|21759399|sp|Q8XI67|RNPH_CLOPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|18145919|dbj|BAB81960.1| ribonuclease PH [Clostridium perfringens str. 13] gi|169296725|gb|EDS78854.1| ribonuclease PH [Clostridium perfringens C str. JGS1495] gi|170663269|gb|EDT15952.1| ribonuclease PH [Clostridium perfringens E str. JGS1987] gi|170710734|gb|EDT22916.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626] gi|177909234|gb|EDT71699.1| ribonuclease PH [Clostridium perfringens D str. JGS1721] gi|182381123|gb|EDT78602.1| ribonuclease PH [Clostridium perfringens NCTC 8239] Length = 248 Score = 352 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 113/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R +R+ + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q Sbjct: 61 AEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG++VAL D + + K ++ V+A+S G++ I+DL Y Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQ--KKPFNVYPIRHFVSAVSVGIVGEEKILDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED VD N VMT+ G +E+QG+ E FS+ +LNLA+ +I+ QKD + Sbjct: 179 EDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALKT 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|127514416|ref|YP_001095613.1| ribonuclease PH [Shewanella loihica PV-4] gi|166228318|sp|A3QIQ6|RNPH_SHELP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|126639711|gb|ABO25354.1| RNAse PH [Shewanella loihica PV-4] Length = 237 Score = 352 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS L++FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLIEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGLIKTNPLKFLIAAVSVGIYKGEPICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + ++L+LAK I +++ +QK +S Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDVQKAALS 237 >gi|168213163|ref|ZP_02638788.1| ribonuclease PH [Clostridium perfringens CPE str. F4969] gi|170715201|gb|EDT27383.1| ribonuclease PH [Clostridium perfringens CPE str. F4969] Length = 248 Score = 352 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 113/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R +R+ + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q Sbjct: 61 AEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG++VAL D + + K ++ V+A+S G++ I+DL Y Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQ--KKPFNVYPIRHFVSAVSVGIVGEEKILDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED VD N VMT+ G +E+QG+ E FS+ +LNLA+ +I+ QKD + Sbjct: 179 EDHIAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALKT 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|294142837|ref|YP_003558815.1| ribonuclease PH [Shewanella violacea DSS12] gi|293329306|dbj|BAJ04037.1| ribonuclease PH [Shewanella violacea DSS12] Length = 237 Score = 352 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FG+T +L TA+ EE VP +++ GW+T Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFEEGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++E+QG+AE FS + +ML LAK I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQKAALN 237 >gi|209693820|ref|YP_002261748.1| ribonuclease PH [Aliivibrio salmonicida LFI1238] gi|226736880|sp|B6EPI9|RNPH_ALISL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|208007771|emb|CAQ77892.1| ribonuclease PH [Aliivibrio salmonicida LFI1238] Length = 238 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 127/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I++TR + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRTAQQVRPITITRHFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNNREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + HM + +KGHVAA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGASVALADAINHMIASGKLKK--NPMKGHVAAVSVGIYKGEAICDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VM + G ++EVQG+AE A FS ML LA+ I D+I+ QK ++ Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEVAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238 >gi|94499853|ref|ZP_01306389.1| ribonuclease PH [Oceanobacter sp. RED65] gi|94428054|gb|EAT13028.1| ribonuclease PH [Oceanobacter sp. RED65] Length = 238 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R++ +TR +K+AEGS LV+ GDT ++ A++E KVP ++R GW+T Sbjct: 1 MRPSGRALDQLRDVKITRNFTKHAEGSVLVEVGDTKVICNASVENKVPPFLRGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EI R+IGR+LR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMIREAAKGKQGGRTVEISRLIGRSLRAAVDLEALGENSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGA VAL D + M + + LK +AA+S G+ G I+DLDY Sbjct: 121 ADGGTRCASITGACVALADAINSMIEAGTL--KASPLKYMIAAVSVGVYEGQAILDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N +M D+G VE+QG+AE F + AML+LAK +A++ ++QK ++N Sbjct: 179 EDSNAETDLNVIMADNGGFVEIQGTAEGEPFQPEELTAMLDLAKKGLAEITEIQKQSLAN 238 >gi|260463468|ref|ZP_05811668.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075] gi|259030793|gb|EEW32069.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075] Length = 238 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 151/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+ GW+T Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG WVAL+DCL+ ME +S+VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMTSVSKVLKDHVAAISCGIHDGQPVIDLDYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ DANFVMT G IVE+QG+AE FS+ F ++ LAK I L+ LQ+ ++ Sbjct: 180 EDSSAGTDANFVMTGKGGIVEIQGTAEGEPFSEGQFADLMGLAKKGIQRLVSLQQMAVA 238 >gi|119773461|ref|YP_926201.1| ribonuclease PH [Shewanella amazonensis SB2B] gi|166228315|sp|A1S2C5|RNPH_SHEAM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|119765961|gb|ABL98531.1| RNAse PH [Shewanella amazonensis SB2B] Length = 237 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q R IS+TR + +AEGS LV+FG+T +L TA+ E VP +++ + GW+T Sbjct: 1 MRPGNRTPAQTRPISITRNFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGSGQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VDL LG I++DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLKQLGENTIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGLVKANPLKFLIAAVSVGIHNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+EVQG+AE F+ + ML LAK I ++I QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEVQGTAEGEPFTHEELLTMLELAKHGIREIIDTQKAALN 237 >gi|304310165|ref|YP_003809763.1| Ribonuclease PH [gamma proteobacterium HdN1] gi|301795898|emb|CBL44099.1| Ribonuclease PH [gamma proteobacterium HdN1] Length = 238 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ ++R+I++TR + +AEGS LV+FG+T ++ TA+ E VP +++ T GW+T Sbjct: 1 MRPSGRKPEELRKINITRDYTCHAEGSVLVEFGNTKVICTASATEGVPRFLKGTGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHDRMDREASRGKQGGRTLEIQRLIARSLRAAVDLKLLGENTIYVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG VAL D L + Q L+ +A++S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGGCVALVDALSFLLKKGTIKQ--DPLQRLIASVSVGIYKGVPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT G +VEVQG+AE F+++ AM+ LA+ I +L LQ+ ++ Sbjct: 179 EDSKAETDMNVVMTQHGGLVEVQGTAEAEPFTREQMNAMMELAEKGIGELFLLQQKALN 237 >gi|254502638|ref|ZP_05114789.1| ribonuclease PH [Labrenzia alexandrii DFL-11] gi|222438709|gb|EEE45388.1| ribonuclease PH [Labrenzia alexandrii DFL-11] Length = 272 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 147/238 (61%), Positives = 184/238 (77%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R GW+T Sbjct: 36 MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNKGWVT 95 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG QI +DCDVIQ Sbjct: 96 AEYGMLPRATGSRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLQALGEVQISVDCDVIQ 155 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL DC++ M+ + VL H+AAISCG+ P++DLDY Sbjct: 156 ADGGTRTAAITGAWVALRDCVEWMK--ARDMVSGDVLTDHIAAISCGIYESTPVLDLDYD 213 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST + DANFVMT SG IVE+QG+AE FS+D F ++NLAK I L+ LQK I Sbjct: 214 EDSTAETDANFVMTGSGGIVEIQGTAEGKPFSEDEFGQLMNLAKAGIKRLVDLQKMAI 271 >gi|283458297|ref|YP_003362916.1| RNase PH [Rothia mucilaginosa DY-18] gi|283134331|dbj|BAI65096.1| RNase PH [Rothia mucilaginosa DY-18] Length = 243 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 111/238 (46%), Positives = 163/238 (68%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE++ GR GGR+ EI R+IGR+LR+V+++ LG I++DCDV+QA Sbjct: 65 EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ + L V+AIS G++ G P++DL Y E Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V+T SG VEVQG+AE A F +D ++L+LA + A+L ++Q++ ++ Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNSLLDLALEGTAELAQIQREALA 242 >gi|146309400|ref|YP_001189865.1| ribonuclease PH [Pseudomonas mendocina ymp] gi|166228302|sp|A4Y0L7|RNPH_PSEMY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145577601|gb|ABP87133.1| RNAse PH [Pseudomonas mendocina ymp] Length = 239 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + + LK +AA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALIDALKVLKKRGSL--KGEPLKQMIAAVSVGIYQGEPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT++G +EVQG+AE A F + F AML LA+ + ++ +LQK + + Sbjct: 181 DSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPEEFNAMLALAQKGMNEIFELQKAALVD 239 >gi|209519146|ref|ZP_03267951.1| ribonuclease PH [Burkholderia sp. H160] gi|209500446|gb|EEA00497.1| ribonuclease PH [Burkholderia sp. H160] Length = 245 Score = 352 bits (903), Expect = 3e-95, Method: Composition-based stats. Identities = 129/238 (54%), Positives = 169/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ NQ+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASISESVPPFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLNLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVAKL--LATGRIESSPINDYVAAISVGVYDGVPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I+ LI QK + Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMSALLDLASDGISTLIAKQKAALG 242 >gi|241663552|ref|YP_002981912.1| ribonuclease PH [Ralstonia pickettii 12D] gi|240865579|gb|ACS63240.1| ribonuclease PH [Ralstonia pickettii 12D] Length = 238 Score = 352 bits (903), Expect = 4e-95, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR +++AEGS LV FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRPVTLTRNFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DL ALG + +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLRALGEHTLHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA +D + M + ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMREKGQLV--GNPIRDFVAAVSVGVVDGVPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG VEVQG+AE FS+ A+L LA I LI LQK + Sbjct: 179 EDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDALLGLADQGIRTLIGLQKQALG 237 >gi|330812597|ref|YP_004357059.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380705|gb|AEA72055.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 240 Score = 351 bits (902), Expect = 4e-95, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LAK + ++ +LQK +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240 >gi|90581389|ref|ZP_01237184.1| putative ribonuclease PH [Vibrio angustum S14] gi|90437366|gb|EAS62562.1| putative ribonuclease PH [Vibrio angustum S14] Length = 238 Score = 351 bits (902), Expect = 4e-95, Method: Composition-based stats. Identities = 128/240 (53%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL+ LG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLNVLGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + +M + LKG VAA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGAMVALVDAINYMLE--KGMIKKSPLKGMVAAVSVGIYKGEPICDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD I D+I +QK + N Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGITDIISMQKQALEN 238 >gi|120553485|ref|YP_957836.1| ribonuclease PH [Marinobacter aquaeolei VT8] gi|166228289|sp|A1TY30|RNPH_MARAV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|120323334|gb|ABM17649.1| RNAse PH [Marinobacter aquaeolei VT8] Length = 238 Score = 351 bits (902), Expect = 4e-95, Method: Composition-based stats. Identities = 133/239 (55%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q R++ +TR +++AEGS LV+FGDT ++ TA++E KVP ++R GWIT Sbjct: 1 MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLEALGEHTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG VAL D L H+ K LK VAA+S G+ G P+ DLDY Sbjct: 121 ADGGTRTAAITGGCVALVDALNHLVK--EKRLKKSPLKQMVAAVSVGVYRGTPVADLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N +MTD G +E+QG+AE A F Q AML LA+ I L +LQK+ +S Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQAELDAMLALARKAIDQLFELQKEALS 237 >gi|205354664|ref|YP_002228465.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226736934|sp|B5RG80|RNPH_SALG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|205274445|emb|CAR39477.1| RNase PH [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629803|gb|EGE36146.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 238 Score = 351 bits (902), Expect = 4e-95, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L+LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLSLARGGIESIVATQKAALEN 238 >gi|224824865|ref|ZP_03697972.1| ribonuclease PH [Lutiella nitroferrum 2002] gi|224603358|gb|EEG09534.1| ribonuclease PH [Lutiella nitroferrum 2002] Length = 238 Score = 351 bits (902), Expect = 4e-95, Method: Composition-based stats. Identities = 130/240 (54%), Positives = 174/240 (72%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + +R ++LTR +K+AEGS LV+FGDT ++ TA+++E VP +++ GW+T Sbjct: 1 MRPSSRPNDALRRVTLTRGYTKHAEGSVLVEFGDTKVICTASVDESVPGFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA SG+Q GR+QEIQR+IGR+LR+VVDL LG RQI IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLGKLGERQIQIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD + + + ++ VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVALHDAISGL--IAQGKLQESPIRDFVAAVSVGVFEGRPVLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT SGH VEVQG+AE FS+ AML LA+ + +LI +QK ++ Sbjct: 179 EDSACETDMNVVMTGSGHFVEVQGTAEGVPFSRAELDAMLRLAEQGVGELIAIQKAALAG 238 >gi|330815847|ref|YP_004359552.1| Ribonuclease PH [Burkholderia gladioli BSR3] gi|327368240|gb|AEA59596.1| Ribonuclease PH [Burkholderia gladioli BSR3] Length = 243 Score = 351 bits (902), Expect = 5e-95, Method: Composition-based stats. Identities = 130/239 (54%), Positives = 170/239 (71%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+RE+ LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRPADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+VVDL LG+R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEQLGARTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ D + + S + VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAVQDAVAKLIAAGKL--ASSPITDSVAAISVGVYQGTPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VMT G +VEVQG+AE F++D A+L+LA+ I +LI LQK + + Sbjct: 185 DSRCDTDMNVVMTGKGGLVEVQGTAEGVPFTRDEMNALLDLAQKGIGELIALQKAALGD 243 >gi|83746454|ref|ZP_00943505.1| Ribonuclease PH [Ralstonia solanacearum UW551] gi|207723807|ref|YP_002254205.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein [Ralstonia solanacearum MolK2] gi|207743767|ref|YP_002260159.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein [Ralstonia solanacearum IPO1609] gi|300703571|ref|YP_003745173.1| RNAse ph (tRNA nucleotidyltransferase) [Ralstonia solanacearum CFBP2957] gi|83726785|gb|EAP73912.1| Ribonuclease PH [Ralstonia solanacearum UW551] gi|206589012|emb|CAQ35974.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein [Ralstonia solanacearum MolK2] gi|206595166|emb|CAQ62093.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein [Ralstonia solanacearum IPO1609] gi|299071234|emb|CBJ42552.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum CFBP2957] Length = 238 Score = 351 bits (901), Expect = 5e-95, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR +++AEGS LV FGDTH+L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRSVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV DLSALG + +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTLHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA +D + M + ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMR--GKGLLTGEPIRDFVAAVSVGVVDGVPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT +G VEVQG+AE F++ A+L LA I LI LQK + Sbjct: 179 EDSACDTDMNVVMTGNGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQALG 237 >gi|255326296|ref|ZP_05367382.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296] gi|255296750|gb|EET76081.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296] Length = 243 Score = 351 bits (901), Expect = 5e-95, Method: Composition-based stats. Identities = 110/238 (46%), Positives = 162/238 (68%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE++ GR GGR+ EI R+IGR+LR+V+++ LG I++DCDV+QA Sbjct: 65 EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ + L V+AIS G++ G P++DL Y E Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V+T SG VEVQG+AE F +D ++L+LA + A+L ++Q++ ++ Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGVPFDRDELNSLLDLALEGTAELAQIQREALA 242 >gi|254472318|ref|ZP_05085718.1| ribonuclease PH [Pseudovibrio sp. JE062] gi|211958601|gb|EEA93801.1| ribonuclease PH [Pseudovibrio sp. JE062] Length = 239 Score = 351 bits (901), Expect = 6e-95, Method: Composition-based stats. Identities = 144/234 (61%), Positives = 184/234 (78%), Gaps = 1/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R +MR +SL R V+K+AEGSCL+KFGDTH+L TA+LEE+VP W+R GW+TA Sbjct: 3 RPSKRTPEEMRPVSLERGVAKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGQNRGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R++RE+ +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQA Sbjct: 63 EYGMLPRATHDRMRRESSAGKQSGRTQEIQRLIGRSLRAVVDLGALGERQITVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVALHDCL+ ME + + +VLK H+AAISCG+ G P+ DLDY E Sbjct: 123 DGGTRTASITGAWVALHDCLKWME-ARDMVKTDKVLKDHIAAISCGIYEGTPVADLDYAE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DS+ D DANFVMT G IVE+QG+AE FS++ ++ LAK I+ L++LQK Sbjct: 182 DSSADTDANFVMTGKGGIVEIQGTAEGEPFSEEELGQLMGLAKQSISKLVELQK 235 >gi|309812199|ref|ZP_07705957.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185] gi|308433886|gb|EFP57760.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185] Length = 255 Score = 351 bits (901), Expect = 6e-95, Method: Composition-based stats. Identities = 126/238 (52%), Positives = 165/238 (69%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+RE+ +TR +AEGSCLV+FG T +L A+ E VP W++ GW+T+ Sbjct: 10 RHDGRTPDQLREVRITRNWLDHAEGSCLVEFGRTRVLCAASFTEGVPRWLKGQGTGWVTS 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R REA G+ GGR+ EI R+IGR+LR+V+D ALG I+IDCDV+QA Sbjct: 70 EYEMLPRSTNTRSDREARKGKVGGRTHEISRLIGRSLRAVIDTKALGENTIVIDCDVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + + ++ L VAAIS G++ G P++DLDY E Sbjct: 130 DGGTRTASITGAYVALADAIADAQARGLIAKKAKPLTDSVAAISVGIVAGQPVLDLDYPE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DST + D N VMT SG IVEVQG+AE A FS+D A+L+LA D IADL Q+D ++ Sbjct: 190 DSTAETDMNVVMTGSGGIVEVQGTAEGAPFSRDELNALLDLAADGIADLTTKQRDALA 247 >gi|254491824|ref|ZP_05105003.1| ribonuclease PH [Methylophaga thiooxidans DMS010] gi|224463302|gb|EEF79572.1| ribonuclease PH [Methylophaga thiooxydans DMS010] Length = 239 Score = 351 bits (901), Expect = 6e-95, Method: Composition-based stats. Identities = 128/240 (53%), Positives = 176/240 (73%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ N++R++S+TR +K+AEGS LV+FGDT +L TA++EE++P ++R + GW+T Sbjct: 1 MRPSGRQANELRQVSITRNYTKHAEGSVLVEFGDTKVLCTASVEERIPPFLRGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA G+QGGR+ EIQR+IGR+LR+ ++L ALG R I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMQREAARGKQGGRTMEIQRLIGRSLRAAINLKALGERSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + H+ K L G VA++S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVALQDAINHL--IKTKKLKKSPLFGQVASVSVGIYNGTPVLDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + D N VM D+G +E+QG+AE F D +ML+LA I L+ Q+D ++ Sbjct: 179 EDSSAETDMNVVMNDAGAYIELQGTAEGHAFRADELQSMLDLASHGIEQLMIKQRDALAE 238 >gi|304392746|ref|ZP_07374686.1| ribonuclease PH [Ahrensia sp. R2A130] gi|303295376|gb|EFL89736.1| ribonuclease PH [Ahrensia sp. R2A130] Length = 239 Score = 350 bits (900), Expect = 6e-95, Method: Composition-based stats. Identities = 141/233 (60%), Positives = 181/233 (77%), Gaps = 2/233 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR ++MR +++ R SK+AEGSCL+KFGDTH+L TA+LEE+VP W+R GW+TA Sbjct: 5 RPSGRAPDEMRAVTIERGFSKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGAGKGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ ALG RQI +DCDVIQA Sbjct: 65 EYGMLPRSTGGRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMKALGERQISLDCDVIQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL +CL M+ + VL +VAAISCG+ G P++DLDY E Sbjct: 125 DGGTRTASITGAYVALKECLDWMQ--ARSMIGGDVLIDNVAAISCGIYEGTPVLDLDYDE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 DS D DANFVMT G IVE+QG+AE A FS++ F A+++LA I +L+ LQ Sbjct: 183 DSEADTDANFVMTGKGGIVEIQGTAEAAPFSREEFSALMDLASKGIGELVDLQ 235 >gi|237756090|ref|ZP_04584666.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5] gi|237691740|gb|EEP60772.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5] Length = 257 Score = 350 bits (900), Expect = 7e-95, Method: Composition-based stats. Identities = 116/240 (48%), Positives = 155/240 (64%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ Q+R I +TR + YAEGS L++FG+T ++ TA++E+KVP +++ T GWIT Sbjct: 1 MRPDGRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR++ R RE V G GR+ EIQR+IGR+LR+ VDL LG + I IDCDVIQ Sbjct: 61 AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGA++A+ D + + LK +VAAIS G + ++DL+Y Sbjct: 121 ADGGTRVASITGAFIAVADACIKL--TKQNLVKANPLKDYVAAISIGKVRNEIVLDLNYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT G VE+ + E TFSQ+ F ML K I LIK+QK+ I Sbjct: 179 EDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFIEG 238 >gi|77461768|ref|YP_351275.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1] gi|123602792|sp|Q3K4M0|RNPH_PSEPF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|77385771|gb|ABA77284.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1] Length = 240 Score = 350 bits (900), Expect = 7e-95, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDLTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK + A+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDAL-KVIKKRGGLKGGDPLKQMIGAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LAK + ++ +LQK +++ Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240 >gi|302877637|ref|YP_003846201.1| ribonuclease PH [Gallionella capsiferriformans ES-2] gi|302580426|gb|ADL54437.1| ribonuclease PH [Gallionella capsiferriformans ES-2] Length = 238 Score = 350 bits (900), Expect = 7e-95, Method: Composition-based stats. Identities = 130/240 (54%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ NQ+REI +TR +K+AEGS L++ GDT ++ TA++EE+VP + + GW+T Sbjct: 1 MRPSSRQANQLREIRITRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA G+Q GR+QEIQR+IGR+LR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMQREAAKGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTIQIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + + + +AAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALQDAVSSLIE--KGLLTETPVTDAIAAISVGIYQGTPVLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VM SGH VEVQG+AE FS+ +L LA++ I DLIK+Q+ ++ Sbjct: 179 EDSACDTDMNVVMLGSGHFVEVQGTAEGHAFSRVEMDQLLELAQNGIVDLIKMQQAALAG 238 >gi|49082078|gb|AAT50439.1| PA5334 [synthetic construct] Length = 240 Score = 350 bits (900), Expect = 7e-95, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTRVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QG R+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGSRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGATVALIDALAVLKKRGAL--KGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMTD+G +EVQG+AE A F AML LA+ + +L +LQ+ ++ Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239 >gi|89076053|ref|ZP_01162413.1| putative ribonuclease PH [Photobacterium sp. SKA34] gi|89048205|gb|EAR53787.1| putative ribonuclease PH [Photobacterium sp. SKA34] Length = 238 Score = 350 bits (900), Expect = 7e-95, Method: Composition-based stats. Identities = 127/240 (52%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL LG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLKILGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + +M + N LK VAA+S G+ G P DL+Y Sbjct: 121 ADGGTRTASITGAMVALVDAINYMLE--NGMIKKSPLKSMVAAVSVGIYKGEPTCDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD I+D+I +QK + N Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKKALEN 238 >gi|289625446|ref|ZP_06458400.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646372|ref|ZP_06477715.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 2250] gi|298484821|ref|ZP_07002921.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160675|gb|EFI01696.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866527|gb|EGH01236.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 240 Score = 350 bits (900), Expect = 8e-95, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ I +L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGITELFELQRAALAD 240 >gi|91784888|ref|YP_560094.1| ribonuclease PH [Burkholderia xenovorans LB400] gi|122970210|sp|Q13V47|RNPH_BURXL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91688842|gb|ABE32042.1| RNAse PH [Burkholderia xenovorans LB400] Length = 246 Score = 350 bits (900), Expect = 8e-95, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVARL--LATGRIESSPITDYVAAISVGVYDGLPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I LI QK + + Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQKAALEQK 244 >gi|152978104|ref|YP_001343733.1| ribonuclease PH [Actinobacillus succinogenes 130Z] gi|171472953|sp|A6VLF1|RNPH_ACTSZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|150839827|gb|ABR73798.1| ribonuclease PH [Actinobacillus succinogenes 130Z] Length = 238 Score = 350 bits (900), Expect = 8e-95, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ R I +TR +K+AEGS LV+FGDT +L TAT++E VP +++ GW+T Sbjct: 1 MRPNNRAINQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVDESVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + D N LKG VAAIS G++ G P+ DL+Y Sbjct: 121 ADGGTRTASITGACVALIDAVNGLVD--NGTLTVSPLKGLVAAISVGIVDGTPVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +LNLAK + + Q+ +++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCKRIFEAQRAALAD 238 >gi|311693191|gb|ADP96064.1| ribonuclease PH [marine bacterium HP15] Length = 238 Score = 350 bits (900), Expect = 8e-95, Method: Composition-based stats. Identities = 132/239 (55%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q R++ +TR +++AEGS LV+FGDT ++ TA++E KVP ++R GWIT Sbjct: 1 MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL+ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG VAL D L H+ ++K LK VAA+S G+ G P+VDLDY Sbjct: 121 ADGGTRTAAITGGCVALVDALNHL--VADKRLKKSPLKQMVAALSVGVYKGTPVVDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N +MTD G +E+QG+AE A F Q +ML LAK I L ++QK + Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFDQSELDSMLTLAKQGIEQLFEIQKAALE 237 >gi|163757816|ref|ZP_02164905.1| ribonuclease PH [Hoeflea phototrophica DFL-43] gi|162285318|gb|EDQ35600.1| ribonuclease PH [Hoeflea phototrophica DFL-43] Length = 238 Score = 350 bits (900), Expect = 8e-95, Method: Composition-based stats. Identities = 152/239 (63%), Positives = 192/239 (80%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+RN GW+T Sbjct: 1 MRPSGRKTDQMRAVSFERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRNGGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA SG+QGGR+ EIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTGDRMRREATSGKQGGRTLEIQRLIGRSLRAVVDLPALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAW+ALHDCL+ ME+ S ++ +VLK HVAA+SCG+ G + DLDY Sbjct: 121 ADGGTRTAAITGAWIALHDCLKWMEERS-MVKVERVLKDHVAAVSCGIFAGQAVTDLDYL 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ + DANFVMT +G IVE+QG+AE F+++ ++ LAK I DL+ LQK ++ Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGEPFTEEQLGQLMGLAKAAINDLVALQKSAVA 238 >gi|170698512|ref|ZP_02889583.1| ribonuclease PH [Burkholderia ambifaria IOP40-10] gi|170136596|gb|EDT04853.1| ribonuclease PH [Burkholderia ambifaria IOP40-10] Length = 246 Score = 350 bits (899), Expect = 9e-95, Method: Composition-based stats. Identities = 131/238 (55%), Positives = 172/238 (72%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ARSPITDHVAAISVGVYEGVPLLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGQLVQLQKDVLG 242 >gi|296160047|ref|ZP_06842867.1| ribonuclease PH [Burkholderia sp. Ch1-1] gi|295889793|gb|EFG69591.1| ribonuclease PH [Burkholderia sp. Ch1-1] Length = 246 Score = 350 bits (899), Expect = 9e-95, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGVRTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVARL--LATGRIESSPITDYVAAISVGVYDGLPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I LI QK + + Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQKAALEQK 244 >gi|297194142|ref|ZP_06911540.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486] gi|197721967|gb|EDY65875.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486] Length = 244 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 153/239 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA+ E VP W + + GW+T+ Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIAWAQAKKIVKPGRKPLTGTVAAVSVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V T G VEVQG+AE F + A+L+LA ADL LQ + + Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLATGGCADLAALQAEALGQ 241 >gi|262374498|ref|ZP_06067772.1| ribonuclease PH [Acinetobacter junii SH205] gi|262310494|gb|EEY91584.1| ribonuclease PH [Acinetobacter junii SH205] Length = 238 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + SNK LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSNKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT +G +E+QG+AE F++ AML LA+ I++LI+ Q+ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGISELIQKQQQALG 237 >gi|237797786|ref|ZP_04586247.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020636|gb|EGI00693.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6] Length = 240 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT G +E+QG+AE A F + AML LAK + +L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSEGGFIEIQGTAEGAPFQPEELNAMLALAKKGMNELFELQRAALAD 240 >gi|153800847|ref|ZP_01955433.1| ribonuclease PH [Vibrio cholerae MZO-3] gi|124123678|gb|EAY42421.1| ribonuclease PH [Vibrio cholerae MZO-3] Length = 257 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L G + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFTHL--IAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEYV 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257 >gi|311113412|ref|YP_003984634.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931] gi|310944906|gb|ADP41200.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931] Length = 245 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 165/239 (69%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R I++TR S AEGS LV+FGDT +L TA+ E VP W++ GW+TA Sbjct: 6 RADGRALNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+TG R RE+V G+ GGR+ EI R+IGR+LR+V+D++ALG I++DCDV+QA Sbjct: 66 EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMNALGENTIVLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + ++ LK V+AIS G++ G P++DL Y E Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSAKPLKDSVSAISVGIIDGTPMLDLPYTE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V+T SG VEVQG+AE A F ++ A+L+LA + A+L ++Q++ + Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNELNALLDLALEGTAELARIQRESLEE 244 >gi|300741332|ref|ZP_07071353.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567] gi|300380517|gb|EFJ77079.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567] Length = 245 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 164/239 (68%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R I++TR S AEGS LV+FGDT +L TA+ E VP W++ GW+TA Sbjct: 6 RADGRTLNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+TG R RE+V G+ GGR+ EI R+IGR+LR+++D++ALG I++DCDV+QA Sbjct: 66 EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAIIDMNALGENTIVLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + + LK V+AIS G++ G P++DL Y E Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSDKPLKDSVSAISVGIIDGTPMLDLPYTE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V+T SG VEVQG+AE A F +D A+L+LA + A+L ++Q++ + Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELARIQRESLEE 244 >gi|226311377|ref|YP_002771271.1| ribonuclease PH [Brevibacillus brevis NBRC 100599] gi|254808581|sp|C0ZAF8|RNPH_BREBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226094325|dbj|BAH42767.1| ribonuclease PH [Brevibacillus brevis NBRC 100599] Length = 253 Score = 349 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 125/240 (52%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR +Q+R +++TR K+AEGSCL++ GDT ++ TATLEE+VP ++R GWIT Sbjct: 1 MRVDGRAHDQLRPVTITRNYIKHAEGSCLIEVGDTKVICTATLEERVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GGR+ EIQR+IGRALRSVV+L A+G R I +DCDVIQ Sbjct: 61 AEYSMLPRATATRNARESSKGKVGGRTMEIQRLIGRALRSVVNLEAMGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ D +Q + D QL L +AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAFVAMVDAMQKLVDSGTWKQL--PLNDFLAATSVGVVGEEAVLDLNYK 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST VD N VMT G VE+QG+ E A FS + M++LAK I +LI QK+ +++ Sbjct: 179 EDSTAIVDMNVVMTGKGKFVELQGTGEDAPFSPEQLQEMISLAKVGIDNLIHSQKEALAD 238 >gi|146280858|ref|YP_001171011.1| ribonuclease PH [Pseudomonas stutzeri A1501] gi|166228304|sp|A4VGR8|RNPH_PSEU5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145569063|gb|ABP78169.1| ribonuclease PH [Pseudomonas stutzeri A1501] gi|327479126|gb|AEA82436.1| ribonuclease PH [Pseudomonas stutzeri DSM 4166] Length = 240 Score = 349 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 168/239 (70%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ TA++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTASIETGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + IDCDVIQA Sbjct: 63 EYGMLPRATGERNQREAARGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VA+ D L+ ++ + +K +AA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGAMVAVIDALKVLKKRG-GLKGGDPVKQMIAAVSVGIYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMTD+G +EVQG+AE A F D AML LA D + L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFHADELNAMLALAHDGVRQLFELQRAALAD 240 >gi|295396715|ref|ZP_06806861.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294970461|gb|EFG46390.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 248 Score = 349 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 121/242 (50%), Positives = 167/242 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ N++RE+ +TR +AEGS LV+FG T +L A+L E VP W++ GW T Sbjct: 1 MRFDGRQANELREVKITRGWLDHAEGSVLVEFGRTRVLCAASLTEGVPRWMKGEGRGWAT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+DLS LG + +DCDV+Q Sbjct: 61 AEYAMLPRATHTRSSRESVKGKIGGRTHEISRLIGRSLRAVLDLSKLGENTLQVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + ++ + ++VLK VAAIS G++ G P++DL Y Sbjct: 121 ADGGTRTAAITGAYVALVDAVAKGKELGWIPKNAEVLKDSVAAISVGIVDGTPVLDLPYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST + D N VMT SG VEVQG+AE A F + ++L+LA+ A+L ++Q ++ Sbjct: 181 EDSTAETDMNVVMTGSGAFVEVQGTAEGAPFDRAELGSLLDLAEHGCAELARIQASALAQ 240 Query: 241 EV 242 ++ Sbjct: 241 DL 242 >gi|187925061|ref|YP_001896703.1| ribonuclease PH [Burkholderia phytofirmans PsJN] gi|226736896|sp|B2T6B5|RNPH_BURPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|187716255|gb|ACD17479.1| ribonuclease PH [Burkholderia phytofirmans PsJN] Length = 246 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 130/240 (54%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ NQ+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRQANQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVAKL--LATGRIESSPITDYVAAISVGVYDGLPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D D N VMT +G VE+QG+AE FS+D A+L+LA D I LI QK + + Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVAFSRDEMNALLDLASDGINTLIAKQKAALEQK 244 >gi|110833067|ref|YP_691926.1| ribonuclease PH [Alcanivorax borkumensis SK2] gi|123345879|sp|Q0VT66|RNPH_ALCBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110646178|emb|CAL15654.1| ribonuclease PH [Alcanivorax borkumensis SK2] Length = 238 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+RE+S TR + +AEGS LV FG+T +L TA++E+ VP +++ GW+T Sbjct: 1 MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGNTKVLCTASVEDGVPRFLKGKGQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R REA G+QGGR+ EIQR+IGR+LR+ VD+ ALG R I +DCDV+Q Sbjct: 61 AEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D ++ + K + L G V A+S GM P++DLDY Sbjct: 121 ADGGTRTASISGACVALVDAFTYLLE--TKKIKNDPLTGLVGAVSVGMYKDTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT G +E+QGSAE A F+++ +L LA++ I ++IK Q+ + Sbjct: 179 EDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDNLLELAENGIGEIIKAQQVALG 237 >gi|171315534|ref|ZP_02904770.1| ribonuclease PH [Burkholderia ambifaria MEX-5] gi|172059924|ref|YP_001807576.1| ribonuclease PH [Burkholderia ambifaria MC40-6] gi|226736891|sp|B1YUN3|RNPH_BURA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|171099371|gb|EDT44109.1| ribonuclease PH [Burkholderia ambifaria MEX-5] gi|171992441|gb|ACB63360.1| ribonuclease PH [Burkholderia ambifaria MC40-6] Length = 246 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ARSPITDHVAAISVGVYEGVPLLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQKDVLG 242 >gi|326779081|ref|ZP_08238346.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1] gi|326659414|gb|EGE44260.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1] Length = 245 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 155/239 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R REAV G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L VAAIS G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V T G VEVQG+AE A F + A+L+LA DL LQ+D ++ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAALQRDALAT 241 >gi|282865124|ref|ZP_06274177.1| ribonuclease PH [Streptomyces sp. ACTE] gi|282560047|gb|EFB65596.1| ribonuclease PH [Streptomyces sp. ACTE] Length = 245 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 115/241 (47%), Positives = 158/241 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKHGRKPLTGTVAAVSVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D + D N V T G VEVQG+AE A F + A+L+LA DL KLQ++ ++ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAAPFDRSELDALLDLATAGCVDLAKLQQEALART 242 Query: 242 V 242 + Sbjct: 243 L 243 >gi|119900252|ref|YP_935465.1| ribonuclease PH [Azoarcus sp. BH72] gi|166228264|sp|A1KCM3|RNPH_AZOSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|119672665|emb|CAL96579.1| ribonuclease PH [Azoarcus sp. BH72] Length = 239 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 131/240 (54%), Positives = 176/240 (73%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ N++R + LTRR +++AEGS LV+FGDT +L TA++EE VP +++ GW+T Sbjct: 1 MRPSQRQANELRPVRLTRRYTRHAEGSVLVEFGDTRVLCTASVEEAVPPFLKGKGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL+ALG RQ++IDCDV+Q Sbjct: 61 AEYGMLPRATHTRSAREAAKGKQTGRTQEIQRLIGRSLRAVVDLAALGERQVVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD L+ + + + VAAIS G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALHDALEGLVAAGKL--AANPMTDFVAAISVGIVDGVPVLDLDYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT SG I+EVQG+AE FS+ A+++LA+ I L++LQK ++ Sbjct: 179 EDSGCDTDMNVVMTGSGGIIEVQGTAEGTPFSRTELNALIDLAEAGIGRLVELQKAALAG 238 >gi|251791523|ref|YP_003006244.1| ribonuclease PH [Dickeya zeae Ech1591] gi|247540144|gb|ACT08765.1| ribonuclease PH [Dickeya zeae Ech1591] Length = 238 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GWIT Sbjct: 1 MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + + LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNGL--VAGGKLKASPLKGMVAAVSVGIVKGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS D ++L LA+ I D+++ QK +++ Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238 >gi|307133086|ref|YP_003885102.1| ribonuclease PH [Dickeya dadantii 3937] gi|306530615|gb|ADN00546.1| ribonuclease PH [Dickeya dadantii 3937] Length = 238 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L AT+E+ VP +++ GWIT Sbjct: 1 MRPTGRSAQQIRPLTLTRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M + LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNGMVASGKL--KTSPLKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS D ++L LA+ I D+++ QK +++ Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238 >gi|50083344|ref|YP_044854.1| ribonuclease PH [Acinetobacter sp. ADP1] gi|49529320|emb|CAG67032.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter sp. ADP1] Length = 251 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL R +Q+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 14 MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 74 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + + K LKG VAAIS G+ ++DL Y Sbjct: 134 ADGGTRTAAITGAAVALIDAMNVLLE--KKKIKQDPLKGLVAAISVGIYQDEVLLDLCYE 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT +G +E+QG+AE F++ AML +A+ I +LIK Q+ + Sbjct: 192 EDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQALG 250 >gi|289209634|ref|YP_003461700.1| ribonuclease PH [Thioalkalivibrio sp. K90mix] gi|288945265|gb|ADC72964.1| ribonuclease PH [Thioalkalivibrio sp. K90mix] Length = 242 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ ++MR + TR +++AEGS LV+FGDT +L AT+E +VP W++N GW+T Sbjct: 1 MRPSGRQADEMRPVRFTRHFTRHAEGSVLVEFGDTRVLCNATIESRVPPWLKNKGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R+ REA G+ GGR+ EIQR+IGR+LR+VVDL ALG RQII+DCDVIQ Sbjct: 61 AEYSMLPRSTHDRMAREAARGKLGGRTMEIQRLIGRSLRAVVDLEALGERQIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA+VAL D ++ + L GH+AAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASISGAYVALRDAIRKARE--QGMIRKDPLHGHLAAISVGIFNGAPVLDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM ++G ++E+QG+AE F +D ML+L + I +++ Q+ ++ Sbjct: 179 EDSQAETDLNLVMNEAGGVIEIQGTAEGHAFRRDELNQMLDLGEKGIQQIVEAQRAALAK 238 >gi|115350911|ref|YP_772750.1| ribonuclease PH [Burkholderia ambifaria AMMD] gi|122323780|sp|Q0BHF7|RNPH_BURCM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|115280899|gb|ABI86416.1| RNAse PH [Burkholderia ambifaria AMMD] Length = 246 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ARSPITDHVAAISVGVYEGVPLLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQKDVLG 242 >gi|83595868|gb|ABC25230.1| ribonuclease PH [uncultured marine bacterium Ant4D3] Length = 256 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 166/239 (69%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R+I +TR +K+AEGS L++FGDT +L TAT+E VP ++R + GW+TA Sbjct: 18 RPSGRATDQLRDIKITRGFTKHAEGSVLIEFGDTRVLCTATVERGVPRFLRGSGSGWVTA 77 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R REA G+QGGR+ EIQR+IGR+LR+ ++L LG I +DCDV+QA Sbjct: 78 EYGMLPRATHSRNGREAARGKQGGRTLEIQRLIGRSLRASLNLEKLGENTITLDCDVLQA 137 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA++A+ D + ++ N L+ +AAIS G+ P++DLDY E Sbjct: 138 DGGTRTASITGAYIAMVDAINVLKKDKNGAMRGDPLRRQIAAISVGIYKDEPVLDLDYDE 197 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT G +EVQG+AE + ++QD AML LA+ I ++ LQ +++ Sbjct: 198 DSKAETDMNVVMTADGGFIEVQGTAEGSPYTQDQMMAMLALARKGITEIAALQTAALAD 256 >gi|330964252|gb|EGH64512.1| ribonuclease PH [Pseudomonas syringae pv. actinidiae str. M302091] Length = 240 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L+ ++ + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADALKVLKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240 >gi|187929359|ref|YP_001899846.1| ribonuclease PH [Ralstonia pickettii 12J] gi|309781786|ref|ZP_07676519.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA] gi|226736927|sp|B2U8D8|RNPH_RALPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|187726249|gb|ACD27414.1| ribonuclease PH [Ralstonia pickettii 12J] gi|308919427|gb|EFP65091.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA] Length = 238 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R ++LTR+ +++AEGS LV FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRQPDQLRPVTLTRKFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGRA+R+V DL ALG + +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRTVFDLRALGEHTLHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA +D + M + ++ VAA+S G++ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMREKGQLV--GDPVRDFVAAVSVGVVDGVPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG VEVQG+AE FS+ AML LA I LI LQK + Sbjct: 179 EDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDAMLGLADQGIRTLISLQKQALG 237 >gi|188996466|ref|YP_001930717.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1] gi|226736945|sp|B2V890|RNPH_SULSY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|188931533|gb|ACD66163.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1] Length = 257 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 115/240 (47%), Positives = 154/240 (64%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ Q+R I + R + YAEGS L++FG+T ++ TA++E+KVP +++ T GWIT Sbjct: 1 MRPDGRKPAQLRPIKIIRDFNIYAEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR++ R RE V G GR+ EIQR+IGR+LR+ VDL LG + I IDCDVIQ Sbjct: 61 AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGA++A+ D + + LK +VAAIS G + ++DL+Y Sbjct: 121 ADGGTRVASITGAFIAVADACIKL--TKQNLVKANPLKDYVAAISVGKVRNEIVLDLNYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT G VE+ + E TFSQ+ F ML K I LIK+QK+ I Sbjct: 179 EDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFIEG 238 >gi|299772068|ref|YP_003734094.1| ribonuclease PH [Acinetobacter sp. DR1] gi|298702156|gb|ADI92721.1| ribonuclease PH [Acinetobacter sp. DR1] Length = 238 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + S K LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT +G +E+QG+AE F++ ML +A+ IA+LIK Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNDMLEMAEKGIAELIKKQQEALG 237 >gi|255320662|ref|ZP_05361839.1| ribonuclease PH [Acinetobacter radioresistens SK82] gi|262380705|ref|ZP_06073858.1| ribonuclease PH [Acinetobacter radioresistens SH164] gi|255302278|gb|EET81518.1| ribonuclease PH [Acinetobacter radioresistens SK82] gi|262297653|gb|EEY85569.1| ribonuclease PH [Acinetobacter radioresistens SH164] Length = 238 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R NQ+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALNQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + + K LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVLLE--RKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT +G +E+QG+AE F++ AML LA+ I++LIK Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQCNAMLELAEQGISELIKKQQEALG 237 >gi|298293788|ref|YP_003695727.1| ribonuclease PH [Starkeya novella DSM 506] gi|296930299|gb|ADH91108.1| ribonuclease PH [Starkeya novella DSM 506] Length = 237 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 135/239 (56%), Positives = 178/239 (74%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ ++MR +S R V ++AEGSCLVKFG+TH+L ATLEE++P W++ GW+T Sbjct: 1 MRPSRRQPDEMRAVSFERGVLRHAEGSCLVKFGETHVLVAATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +RE +G+ GR+ EIQR+IGR+LR+VVDL LG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATHERTRREVTAGKPSGRTHEIQRLIGRSLRTVVDLEKLGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHDCL M+ + + L+ H+AA+SCG++ G P +DLDY Sbjct: 121 ADGGTRTASITGAWIALHDCLSWMK--TRGMLATIPLRDHIAAVSCGIVDGEPRLDLDYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ D NFVMT +G VE+QG+AE+ F++D F AML LA+ +A L+ LQK +S Sbjct: 179 EDSSAHTDVNFVMTGTGGFVEIQGTAEKTPFTEDEFGAMLGLARKGVAKLVDLQKLAVS 237 >gi|271498722|ref|YP_003331747.1| ribonuclease PH [Dickeya dadantii Ech586] gi|270342277|gb|ACZ75042.1| ribonuclease PH [Dickeya dadantii Ech586] Length = 238 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GWIT Sbjct: 1 MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M + LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNGMVASGKL--KASPLKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS D ++L LA+ I D+++ QK +++ Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKATLAD 238 >gi|253995547|ref|YP_003047611.1| ribonuclease PH [Methylotenera mobilis JLW8] gi|253982226|gb|ACT47084.1| ribonuclease PH [Methylotenera mobilis JLW8] Length = 241 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 131/239 (54%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R S R NQ+RE+ + R +K+AEGS LVKFGDTH+L TA+++EKVP +++ GW+T Sbjct: 5 IRPSQRACNQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLKGKGQGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ Sbjct: 65 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD + + LK VAAIS G+ G P++DLDY Sbjct: 125 ADGGTRTASITGAYVALHDAISFLLKSGKI--SESPLKDSVAAISVGVYQGTPVLDLDYI 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT G VE+QG+AE F++D AML+LA I LI Q + Sbjct: 183 EDSDCDTDMNVVMTGKGGFVEIQGTAEGEPFARDAMNAMLDLAAHGIQQLIIEQNKALG 241 >gi|332968500|gb|EGK07563.1| tRNA nucleotidyltransferase [Psychrobacter sp. 1501(2011)] Length = 238 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ +Q+R ++ R +K+AEGS LV FGDT +L TA++E VP W++ GW+T Sbjct: 1 MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASVESGVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR++VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLNKLGENTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +AL D L+ ++ K + L G VAA+S G+ G ++DL+Y Sbjct: 121 ADGGTRTASITGAAIALIDALESLQQ--KKKLKADPLVGLVAAVSVGVKNGEILLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ D D N VMT G +E+QG+AE F++ ML +A+ IADLIKLQ+ + Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLIKLQQTALG 237 >gi|119472968|ref|ZP_01614824.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium TW-7] gi|119444637|gb|EAW25947.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium TW-7] Length = 237 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R NQ+R +S TR + +AEGS LV+FG+T +L TAT+E VP +++ GWI Sbjct: 1 MRPSQRTPNQIRPVSFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRNAREASRGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L HM + S LK +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N ++T++G I+EVQG+AE FS D +L LAK I ++I +QK ++ Sbjct: 179 EDSAAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237 >gi|161611344|ref|YP_272506.2| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322255|gb|EFW78351.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. B076] gi|320331904|gb|EFW87842.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4] gi|330873180|gb|EGH07329.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4] Length = 240 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240 >gi|71909462|ref|YP_287049.1| ribonuclease PH [Dechloromonas aromatica RCB] gi|123626372|sp|Q479A2|RNPH_DECAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|71849083|gb|AAZ48579.1| RNAse PH [Dechloromonas aromatica RCB] Length = 238 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ +Q+R + +TR +++AEGS L++ GDT +L TA++EE VP ++R GW+T Sbjct: 1 MRPSQRQPDQLRTVRITRNFTRHAEGSVLIEMGDTRVLCTASVEENVPPFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV+DL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRALRSVIDLKALGERQITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGAWVAL++ + + ++ HVAAIS G+ G P++DLDY Sbjct: 121 ADGGTRCASITGAWVALYEACDKLVQAGKL--PANPVRDHVAAISVGIYKGAPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT +G IVE+QG+AE F+++ +++LA + L+ Q+ ++ Sbjct: 179 EDSDCDTDMNVVMTGAGGIVEIQGTAEGEPFTREQMSVLVDLATLGVRHLVAAQQSALA 237 >gi|293611262|ref|ZP_06693560.1| ribonuclease PH [Acinetobacter sp. SH024] gi|292826513|gb|EFF84880.1| ribonuclease PH [Acinetobacter sp. SH024] gi|325124022|gb|ADY83545.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 238 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + S K LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT +G +E+QG+AE F++ AML +A+ IA+LIK Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEALG 237 >gi|225848159|ref|YP_002728322.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1] gi|225644653|gb|ACN99703.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1] Length = 257 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 115/240 (47%), Positives = 154/240 (64%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R+ Q+R I +TR + YAEGS L++FG+T ++ TA++E+KVP +++ + GWIT Sbjct: 1 MRPDNRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASIEDKVPPFLKGSGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR++ R RE V G GR+ EIQR+IGR+LR+ VDL LG R I IDCDVIQ Sbjct: 61 AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGA++A+ D L +E N S LK +VAAIS G + ++DL+Y Sbjct: 121 ADGGTRVASITGAFIAVADALIKLEK--NNLVKSNPLKDYVAAISVGKVNNEIVLDLNYQ 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT G VE+ + E TF+ M+ K I LIK+QK+ I Sbjct: 179 EDSKAQVDMNIVMTGKGEFVELGATGEENTFTYQELQKMIEYGKSGIERLIKIQKEFIEG 238 >gi|226952284|ref|ZP_03822748.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter sp. ATCC 27244] gi|294648770|ref|ZP_06726228.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226836950|gb|EEH69333.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter sp. ATCC 27244] gi|292825340|gb|EFF84085.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 238 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + SNK LKG +AAIS GM ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSNKKIKQDPLKGLIAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT +G +E+QG+AE F++ AML LA+ IA+LI+ Q+ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGIAELIQKQQQALG 237 >gi|223041894|ref|ZP_03612080.1| ribonuclease PH [Actinobacillus minor 202] gi|240948855|ref|ZP_04753211.1| ribonuclease PH [Actinobacillus minor NM305] gi|223017310|gb|EEF15735.1| ribonuclease PH [Actinobacillus minor 202] gi|240296670|gb|EER47281.1| ribonuclease PH [Actinobacillus minor NM305] Length = 238 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR +KYAEGS L++FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTKYAEGSVLIEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR++VDL ALG R I IDCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAIVDLKALGERTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VALHD + + ++ + LKG VAAIS G++ + DL+Y Sbjct: 121 ADGGTRTASITGACVALHDAINKL--MADGVLKTNPLKGLVAAISVGIVNNNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM D G +VEVQG+AE F+ +L+LA I LI+ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVDDGRLVEVQGTAEGEPFTHMELLQLLDLAHQGIEQLIEAQRKALAE 238 >gi|319795588|ref|YP_004157228.1| ribonuclease ph [Variovorax paradoxus EPS] gi|315598051|gb|ADU39117.1| ribonuclease PH [Variovorax paradoxus EPS] Length = 243 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 121/237 (51%), Positives = 168/237 (70%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TR + +AEGS L++FG T +L TA++EE+VP + + GW+TA Sbjct: 6 RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASVEERVPPHKKGSGEGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR++R+V DL+ALG R I +DCDV+QA Sbjct: 66 EYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VA D + + + + +KGHVAAIS G++ G P++DL+Y E Sbjct: 126 DGGTRTAAITGAFVAAQDAVNKL--LAAGTLKASPIKGHVAAISVGIVGGTPLLDLEYTE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS+ D D N VMT +GH VEVQG+AE F+++ +L LA+ I +L+ LQK + Sbjct: 184 DSSCDTDMNVVMTGAGHFVEVQGTAEGVAFTREEMNLLLGLAEKGIGELVTLQKQAL 240 >gi|163750741|ref|ZP_02157977.1| ribonuclease PH [Shewanella benthica KT99] gi|161329585|gb|EDQ00577.1| ribonuclease PH [Shewanella benthica KT99] Length = 237 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFEVGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG IIIDCDVIQ Sbjct: 61 AEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++E+QG+AE FS + +ML LAK I +++ +QK ++ Sbjct: 179 EDSEAETDMNVVMTETGQMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQKAALN 237 >gi|254482749|ref|ZP_05095987.1| ribonuclease PH [marine gamma proteobacterium HTCC2148] gi|214037108|gb|EEB77777.1| ribonuclease PH [marine gamma proteobacterium HTCC2148] Length = 240 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR Q+R+IS+TR + +AEGS LV FG T ++ TA++EE VP ++R GW+TA Sbjct: 3 RPSGRTPEQLRDISITRNFTCHAEGSVLVSFGKTKVICTASVEEGVPRFLRGKGSGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL LG I IDCDVIQA Sbjct: 63 EYGMLPRSTGSRMGREASRGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTINIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D + +++ K + L +A++S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGALVALVDAINYLQR--KKIINTDPLLEMMASVSVGIYQGVPVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N +M +SG +EVQG+AE ATF++D AML+LA I +LI+ QK ++ Sbjct: 181 DSAADTDMNVIMGESGGFIEVQGTAEGATFARDELNAMLDLASAGILELIEKQKAALAE 239 >gi|328541647|ref|YP_004301756.1| ribonuclease PH [polymorphum gilvum SL003B-26A1] gi|326411399|gb|ADZ68462.1| Ribonuclease PH [Polymorphum gilvum SL003B-26A1] Length = 237 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 146/235 (62%), Positives = 183/235 (77%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R + GW+T Sbjct: 1 MRPSKRDADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R++REA G+Q GR+QEIQR+IGR+LR+VVDL ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRATGERMRREASVGKQSGRTQEIQRLIGRSLRAVVDLEALGEYQISVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC++ M + VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALRDCIEWMR--ARDMVTKPVLKDHVAAISCGIYKGTPVLDLDYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + DANFV+T +G IVE+QG+AE A F++D F A+L LAK I L+ LQK Sbjct: 179 EDSAAETDANFVLTGTGGIVEIQGTAEGAPFTEDEFAALLGLAKKGIGRLVDLQK 233 >gi|254428098|ref|ZP_05041805.1| ribonuclease PH [Alcanivorax sp. DG881] gi|196194267|gb|EDX89226.1| ribonuclease PH [Alcanivorax sp. DG881] Length = 238 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+RE+S TR + +AEGS LV FG T +L TA++EE VP +++ GW+T Sbjct: 1 MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGGTKVLCTASVEEGVPRFLKGKGQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R REA G+QGGR+ EIQR+IGR+LR+ VD+ ALG R I +DCDV+Q Sbjct: 61 AEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D H+ + K S L G V A+S GM G P++DLDY Sbjct: 121 ADGGTRTASISGACVALVDAFTHLLE--TKKIKSDPLTGLVGAVSVGMYEGAPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT G +E+QGSAE A F+++ ++L LA+ I ++IK Q+ + Sbjct: 179 EDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDSLLGLAEKGIGEIIKAQQVALG 237 >gi|302551723|ref|ZP_07304065.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736] gi|302469341|gb|EFL32434.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736] Length = 245 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 117/237 (49%), Positives = 155/237 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R I++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPQQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQRKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D D N V T G VEVQG+AE F++D A+L+LA ++L Q+ + Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCSELAAHQRTAL 239 >gi|257092562|ref|YP_003166203.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045086|gb|ACV34274.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 238 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 130/240 (54%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ +Q+R++ +TR+ + +AEGS L++ GDT +L TA++EE VP + R T GW+T Sbjct: 1 MRPSQRQPSQLRQVRITRQFTSHAEGSVLIEIGDTRVLCTASVEEFVPPFRRGTGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R +REA G+Q GR+QEIQR+IGRALR+V DL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRTQREAAKGKQTGRTQEIQRLIGRALRAVTDLKALGERQITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITGAW+AL+D H+ L HVAAIS G+ G P++DLDY Sbjct: 121 ADGGTRCAAITGAWLALNDACAHLLAQGRLVV--NPLSDHVAAISVGIYQGSPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ D D N VMT SG IVE+QG+AE F++ +L+LA I LI QK ++ Sbjct: 179 EDSSCDTDMNVVMTGSGGIVEIQGTAEGVPFTRGQMNQLLDLADAGIGQLIARQKAALAQ 238 >gi|325579215|ref|ZP_08149171.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325159450|gb|EGC71584.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 238 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q R I +TR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T Sbjct: 1 MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + +N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IANGTLKTNPIKGLVAAISVGIVEGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREALG 237 >gi|186475433|ref|YP_001856903.1| ribonuclease PH [Burkholderia phymatum STM815] gi|226736895|sp|B2JEI0|RNPH_BURP8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|184191892|gb|ACC69857.1| ribonuclease PH [Burkholderia phymatum STM815] Length = 246 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 125/240 (52%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRTADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPAFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLERLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA D + + + + + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAARDAVAKL--LATGRIETSPITDYVAAISVGVFDGIPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D D N VMT G VE+QG+AE FS+D +L+LA+ IA LI QK+ + ++ Sbjct: 185 DSQCDTDMNVVMTGDGGFVEIQGTAEGVPFSRDEMNKLLDLAQAGIATLIAKQKEALESK 244 >gi|164686704|ref|ZP_02210732.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM 16795] gi|164604094|gb|EDQ97559.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM 16795] Length = 449 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ +TR +KYAEGS ++ GDT +L A++E+KVP ++RNT GWI A Sbjct: 3 RIDGREFDQIRDLKITRNYTKYAEGSVFIEMGDTKVLCNASIEDKVPPFLRNTGTGWINA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R R+A G+ GRSQEIQR+IGRA+RSVVDL LG R I IDCDVIQA Sbjct: 63 EYSMLPRSTQQRKIRDASRGKIDGRSQEIQRLIGRAIRSVVDLDKLGERTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ D + + K ++ V+AIS G++ G ++DL Y E Sbjct: 123 DGGTRTASITGAFVAVLDAINKLHK--EKAIKHMPVRNFVSAISVGIVNGEYLLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VD N +MTD G VE+QG+ E FS+ +L L + L+K Q++ + Sbjct: 181 DSNAQVDMNIIMTDKGEFVELQGTGEECPFSRKDLEKLLELGEKGNKMLLKAQREALGE 239 >gi|329901883|ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480] gi|327548975|gb|EGF33592.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480] Length = 244 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR + +R + LTR +K+AEGS L++FGDT ++ TA++E+KVP +++ GW+T Sbjct: 5 LRPSGRTADALRPVRLTRHYTKHAEGSVLIEFGDTKVICTASIEDKVPGFLKGKGQGWMT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ DLSA G R + +DCDVIQ Sbjct: 65 AEYGMLPRSTHTRMAREAAKGKQSGRTQEIQRLIGRSLRAAFDLSAFGERTLHLDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VA HD + D + LK VAAIS G+ G P++DLDY Sbjct: 125 ADGGTRTASITGAMVAAHDAFSKLVDTG--VLSAMPLKHFVAAISVGVFQGTPVLDLDYD 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D D N VMTD+GH +EVQG+AE A F + +L+LA I DLI LQ+ + Sbjct: 183 EDSTCDTDMNVVMTDAGHFIEVQGTAEGAAFDRATMNQLLDLADGGIRDLIALQRRELG 241 >gi|251798434|ref|YP_003013165.1| ribonuclease PH [Paenibacillus sp. JDR-2] gi|247546060|gb|ACT03079.1| ribonuclease PH [Paenibacillus sp. JDR-2] Length = 245 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 112/240 (46%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ NQ+R +++T V+KYAEGS L++ G+T ++ TA++EE+VP +++ GWIT Sbjct: 1 MRTDGRQPNQLRPVTITTGVNKYAEGSVLIEVGETKVICTASVEERVPPFMKGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+ G+ GR+ EIQR+IGRALRS+VDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATHSRNHRESAKGKLSGRTMEIQRLIGRALRSIVDLQALGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA+VAL + + + + + +A++S G++ ++DL+Y Sbjct: 121 ADGGTRTTSITGAFVALCLAVNKLSKTTQFPKY--PITAFLASVSVGVIQERELLDLNYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT G VE+QG+ E + FS++ +L LA+ I +LI+ Q++ + Sbjct: 179 EDSKAKVDMNVVMTGEGKFVELQGTGEDSPFSREELNKLLELAEGGIEELIEKQREALGE 238 >gi|328882703|emb|CCA55942.1| Ribonuclease PH [Streptomyces venezuelae ATCC 10712] Length = 243 Score = 348 bits (894), Expect = 4e-94, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 154/241 (63%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+T Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G V A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQTKKLVKAGRKPLTGTVGAVSVGIVDGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D D N V T G VEVQG+AE F + A+L+LA A+L ++Q+ + Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLASGGCAELAEIQRKALEGT 242 Query: 242 V 242 + Sbjct: 243 L 243 >gi|27364280|ref|NP_759808.1| ribonuclease PH [Vibrio vulnificus CMCP6] gi|37678463|ref|NP_933072.1| ribonuclease PH [Vibrio vulnificus YJ016] gi|320157673|ref|YP_004190052.1| ribonuclease PH [Vibrio vulnificus MO6-24/O] gi|33301654|sp|Q8DDX4|RNPH_VIBVU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61216003|sp|Q7MPT3|RNPH_VIBVY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|27360398|gb|AAO09335.1| ribonuclease PH [Vibrio vulnificus CMCP6] gi|37197203|dbj|BAC93043.1| RNase PH [Vibrio vulnificus YJ016] gi|319932985|gb|ADV87849.1| ribonuclease PH [Vibrio vulnificus MO6-24/O] Length = 238 Score = 348 bits (894), Expect = 4e-94, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I++++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLESAKKGISEIVAAQKAALAN 238 >gi|239941573|ref|ZP_04693510.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998] gi|239988038|ref|ZP_04708702.1| ribonuclease PH [Streptomyces roseosporus NRRL 11379] gi|291445016|ref|ZP_06584406.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998] gi|291347963|gb|EFE74867.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998] Length = 245 Score = 348 bits (894), Expect = 4e-94, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 155/239 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R REAV G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L VAAIS G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V T G VEVQG+AE A F + ++L+LA DL LQ+D ++ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGSLLDLATAGCVDLAALQRDALAT 241 >gi|262377117|ref|ZP_06070342.1| ribonuclease PH [Acinetobacter lwoffii SH145] gi|262307855|gb|EEY88993.1| ribonuclease PH [Acinetobacter lwoffii SH145] Length = 238 Score = 348 bits (894), Expect = 4e-94, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASVDSSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRS+VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRSMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + + K LKG VAA+S G+ ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVLLE--RKKIKHDPLKGLVAAVSVGIFKDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT +G +E+QG+AE F++ AML +A+ I +L+K Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIQELVKKQQEALG 237 >gi|239994379|ref|ZP_04714903.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonas macleodii ATCC 27126] Length = 237 Score = 348 bits (894), Expect = 4e-94, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R +++TR+ + +AEGS LV+FG+T +L AT+EE VP +++ GWIT Sbjct: 1 MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L +M + + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--AKGIIKTNPLKHMIAALSVGIYEGTPIADLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++EVQG+AE FS + ML + K + +L +QK ++ Sbjct: 179 EDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDEMLKIGKHGLRELFDIQKAALA 237 >gi|213970694|ref|ZP_03398819.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1] gi|213924528|gb|EEB58098.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1] Length = 262 Score = 348 bits (894), Expect = 4e-94, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 25 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 84 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 85 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 144 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA S GM G P++DLDY E Sbjct: 145 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAASVGMYQGEPVLDLDYLE 203 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L ++Q+ +++ Sbjct: 204 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 262 >gi|113971932|ref|YP_735725.1| ribonuclease PH [Shewanella sp. MR-4] gi|114045862|ref|YP_736412.1| ribonuclease PH [Shewanella sp. MR-7] gi|117922209|ref|YP_871401.1| ribonuclease PH [Shewanella sp. ANA-3] gi|123131815|sp|Q0HZV0|RNPH_SHESR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123324577|sp|Q0HE49|RNPH_SHESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228320|sp|A0L1S6|RNPH_SHESA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|113886616|gb|ABI40668.1| RNAse PH [Shewanella sp. MR-4] gi|113887304|gb|ABI41355.1| RNAse PH [Shewanella sp. MR-7] gi|117614541|gb|ABK49995.1| RNAse PH [Shewanella sp. ANA-3] Length = 237 Score = 348 bits (893), Expect = 4e-94, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + +L LAK+ I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELIELLGLAKNSIREIVDVQKAALN 237 >gi|110801547|ref|YP_699516.1| ribonuclease PH [Clostridium perfringens SM101] gi|123145921|sp|Q0SQU1|RNPH_CLOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110682048|gb|ABG85418.1| tRNA nucleotidyltransferase [Clostridium perfringens SM101] Length = 248 Score = 348 bits (893), Expect = 4e-94, Method: Composition-based stats. Identities = 109/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR++ Q+R + +TR +KYAEGS L++ GDT +L TA++EEKVP +++ + GWIT Sbjct: 1 MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PRST +R +R+ + GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q Sbjct: 61 AEYNMIPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG++VAL D + + K ++ V+A+S G++ ++DL Y Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQ--KKPFNVYPIRHFVSAVSIGIVGEEKVLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED VD N VM + G +E+QG+ E FS+ +LNLA+ +I+ QK+ + Sbjct: 179 EDHVAKVDMNVVMIEEGEFIEIQGTGEIGPFSRKELDELLNLAEKGAKQMIQAQKNALKT 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|66043483|ref|YP_233324.1| ribonuclease PH [Pseudomonas syringae pv. syringae B728a] gi|257481756|ref|ZP_05635797.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302189241|ref|ZP_07265914.1| ribonuclease PH [Pseudomonas syringae pv. syringae 642] gi|75503908|sp|Q4ZZY6|RNPH_PSEU2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|63254190|gb|AAY35286.1| Ribonuclease PH [Pseudomonas syringae pv. syringae B728a] gi|330876506|gb|EGH10655.1| ribonuclease PH [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330890924|gb|EGH23585.1| ribonuclease PH [Pseudomonas syringae pv. mori str. 301020] gi|330895695|gb|EGH27987.1| ribonuclease PH [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941124|gb|EGH44004.1| ribonuclease PH [Pseudomonas syringae pv. pisi str. 1704B] gi|330957289|gb|EGH57549.1| ribonuclease PH [Pseudomonas syringae pv. maculicola str. ES4326] gi|330972206|gb|EGH72272.1| ribonuclease PH [Pseudomonas syringae pv. aceris str. M302273PT] gi|330977343|gb|EGH77296.1| ribonuclease PH [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330986869|gb|EGH84972.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009390|gb|EGH89446.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 240 Score = 348 bits (893), Expect = 4e-94, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240 >gi|24375740|ref|NP_719783.1| ribonuclease PH [Shewanella oneidensis MR-1] gi|61216058|sp|Q8E9L4|RNPH_SHEON RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|24350681|gb|AAN57227.1|AE015858_8 ribonuclease PH [Shewanella oneidensis MR-1] Length = 237 Score = 348 bits (893), Expect = 4e-94, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE F+ + +L LAK+ I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQKAALN 237 >gi|167036328|ref|YP_001671559.1| ribonuclease PH [Pseudomonas putida GB-1] gi|189043769|sp|B0KQ94|RNPH_PSEPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166862816|gb|ABZ01224.1| ribonuclease PH [Pseudomonas putida GB-1] Length = 240 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKAGNPLKHMIAAVSVGMYQGEAVLDLDYPE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240 >gi|229524838|ref|ZP_04414243.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426] gi|229338419|gb|EEO03436.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426] Length = 257 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFAHLMAKGQLKK--NPMKGHVAAVSVGILGEDVLCDLEYV 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257 >gi|87121112|ref|ZP_01077003.1| ribonuclease PH [Marinomonas sp. MED121] gi|86163604|gb|EAQ64878.1| ribonuclease PH [Marinomonas sp. MED121] Length = 239 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 118/238 (49%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R++ +TR +K+AEGS L++ GDT ++ TATL VP +++ GWIT Sbjct: 1 MRPSGRAVDQLRDLKITRNFTKHAEGSVLIECGDTKVICTATLVPGVPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +RV REA G+Q GR+ EIQR+IGR+LR+ VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRVDREAARGKQTGRTVEIQRLIGRSLRAAVDLKKLGEHTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL D ++ + + K + +AAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASITGGFVALADAVKKLVE--RKKIKENPIVSQIAAISVGVYKGEPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N +M D G +E+QG+AE FS +H ML +A+ I ++++ Q+D + Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLKVARKGINEILQAQRDAL 236 >gi|152998356|ref|YP_001343191.1| ribonuclease PH [Marinomonas sp. MWYL1] gi|189043766|sp|A6W3H7|RNPH_MARMS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|150839280|gb|ABR73256.1| ribonuclease PH [Marinomonas sp. MWYL1] Length = 239 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 118/241 (48%), Positives = 167/241 (69%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +Q+R + +TR +K+AEGS L++ GDT ++ TAT+ VP +++ GWIT Sbjct: 1 MRPSGREADQLRPLKITRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL D ++ + + NK + +AAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASITGGFVALADAMRVLVE--NKKVKENPIVSQIAAISVGVYKGVPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N +M D G +E+QG+AE FS +H ML +A+ IA++++ Q+ + + Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLAVARKGIAEIMEAQRAALFD 238 Query: 241 E 241 + Sbjct: 239 K 239 >gi|56461525|ref|YP_156806.1| RNase PH [Idiomarina loihiensis L2TR] gi|61215805|sp|Q5QYL5|RNPH_IDILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56180535|gb|AAV83257.1| RNase PH [Idiomarina loihiensis L2TR] Length = 237 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R +++TR +K+AEGS L++FG+T +L A++E VP +++ GW+T Sbjct: 1 MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGETKVLCNASVERGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+IGR+LR+ +D+SALG I IDCDVIQ Sbjct: 61 AEYSMLPRATHTRSAREASRGKQGGRTLEIQRLIGRSLRTCIDMSALGEHTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M + LK VAAIS G+L G P+ DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNWMR--AQGMVKVNPLKEMVAAISVGILDGEPVSDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT++G +E+QG+AE FS D +++ +A+ I +LI +QK ++ Sbjct: 179 EDSKADTDMNIVMTEAGKFIEIQGTAEGEAFSFDEMNSLVEMARHSIRELIDIQKQALA 237 >gi|153830706|ref|ZP_01983373.1| ribonuclease PH [Vibrio cholerae 623-39] gi|148873826|gb|EDL71961.1| ribonuclease PH [Vibrio cholerae 623-39] Length = 257 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L G + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFTHL--IAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEYV 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE F + +L +AK IAD++ +QK + + Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFCHEQLLELLAVAKKGIADIVAVQKASLLD 257 >gi|332995822|gb|AEF05877.1| ribonuclease PH [Alteromonas sp. SN2] Length = 237 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R +++TR+ + +AEGS LV+FG+T +L AT+EE VP +++ GWIT Sbjct: 1 MRPSGRTANQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L +M S + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--SKGILKANPLKHMIAALSVGIYKGTPIADLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++EVQG+AE F+ + ML +AK + +L +QK ++ Sbjct: 179 EDSVAETDMNIVMTETGKLIEVQGTAEGEPFAFEELDEMLTIAKHGLRELFDIQKAALA 237 >gi|170693638|ref|ZP_02884796.1| ribonuclease PH [Burkholderia graminis C4D1M] gi|170141420|gb|EDT09590.1| ribonuclease PH [Burkholderia graminis C4D1M] Length = 246 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 129/238 (54%), Positives = 168/238 (70%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRLAHQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + S + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLLAAGRI--ESSPISDYVAAISVGVYDGLPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VE+QG+AE FS+D A+L+LA D IA LI QK+ + Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGIATLIAKQKEALE 242 >gi|154254011|ref|YP_001414835.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1] gi|171769691|sp|A7HZ45|RNPH_PARL1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|154157961|gb|ABS65178.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1] Length = 238 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 146/239 (61%), Positives = 184/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +MR +S V+K+AEGSCLV+FGDTH+L TA+LEE+VP +++ GW+T Sbjct: 1 MRPSGRQPQEMRTVSFEPGVAKHAEGSCLVRFGDTHVLCTASLEERVPPFLKGGGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA G+Q GR+QEIQR++GR+LRSVVDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRSTHERMRREAAQGKQSGRTQEIQRLVGRSLRSVVDLKALGERQISVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALH C++ M + + VLK HVAAISCG+ G P+VDLDY Sbjct: 121 ADGGTRTASITGAWVALHQCIEWMR--ARSMISAPVLKDHVAAISCGIYQGVPVVDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D DANFV+T G I E+QG+AE FS + F ++L LAK IADL++ QK+ +S Sbjct: 179 EDSTADTDANFVITGKGGICEIQGTAEGEPFSDEEFLSLLALAKTSIADLVRRQKEAVS 237 >gi|153216091|ref|ZP_01950265.1| ribonuclease PH [Vibrio cholerae 1587] gi|153819951|ref|ZP_01972618.1| ribonuclease PH [Vibrio cholerae NCTC 8457] gi|153821600|ref|ZP_01974267.1| ribonuclease PH [Vibrio cholerae B33] gi|153825939|ref|ZP_01978606.1| ribonuclease PH [Vibrio cholerae MZO-2] gi|227080431|ref|YP_002808982.1| ribonuclease PH [Vibrio cholerae M66-2] gi|229506989|ref|ZP_04396497.1| ribonuclease PH [Vibrio cholerae BX 330286] gi|229509359|ref|ZP_04398842.1| ribonuclease PH [Vibrio cholerae B33] gi|229512476|ref|ZP_04401948.1| ribonuclease PH [Vibrio cholerae TMA 21] gi|229516306|ref|ZP_04405754.1| ribonuclease PH [Vibrio cholerae RC9] gi|229527287|ref|ZP_04416680.1| ribonuclease PH [Vibrio cholerae 12129(1)] gi|229606497|ref|YP_002877145.1| ribonuclease PH [Vibrio cholerae MJ-1236] gi|254291599|ref|ZP_04962388.1| ribonuclease PH [Vibrio cholerae AM-19226] gi|297581663|ref|ZP_06943585.1| ribonuclease PH [Vibrio cholerae RC385] gi|298500852|ref|ZP_07010654.1| ribonuclease PH [Vibrio cholerae MAK 757] gi|9654617|gb|AAF93386.1| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961] gi|124114467|gb|EAY33287.1| ribonuclease PH [Vibrio cholerae 1587] gi|126509515|gb|EAZ72109.1| ribonuclease PH [Vibrio cholerae NCTC 8457] gi|126520887|gb|EAZ78110.1| ribonuclease PH [Vibrio cholerae B33] gi|149740347|gb|EDM54483.1| ribonuclease PH [Vibrio cholerae MZO-2] gi|150422456|gb|EDN14414.1| ribonuclease PH [Vibrio cholerae AM-19226] gi|227008319|gb|ACP04531.1| ribonuclease PH [Vibrio cholerae M66-2] gi|229335295|gb|EEO00779.1| ribonuclease PH [Vibrio cholerae 12129(1)] gi|229346732|gb|EEO11702.1| ribonuclease PH [Vibrio cholerae RC9] gi|229350475|gb|EEO15423.1| ribonuclease PH [Vibrio cholerae TMA 21] gi|229353674|gb|EEO18611.1| ribonuclease PH [Vibrio cholerae B33] gi|229356094|gb|EEO21013.1| ribonuclease PH [Vibrio cholerae BX 330286] gi|229369152|gb|ACQ59575.1| ribonuclease PH [Vibrio cholerae MJ-1236] gi|297534070|gb|EFH72909.1| ribonuclease PH [Vibrio cholerae RC385] gi|297540356|gb|EFH76415.1| ribonuclease PH [Vibrio cholerae MAK 757] Length = 257 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257 >gi|330719753|gb|EGG98274.1| Ribonuclease PH [gamma proteobacterium IMCC2047] Length = 238 Score = 347 bits (892), Expect = 5e-94, Method: Composition-based stats. Identities = 127/240 (52%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+RE+ +TR +K+AEGS LV+FGDT ++ TAT E VP ++R GW+T Sbjct: 1 MRPSGRTPDQLREVKITRNYTKHAEGSVLVEFGDTKVICTATAETGVPHFLRGKGVGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ +D+ LG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAIDMKKLGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + S + +K +AA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGACVALVDAVNSLR--SKGAIKADPIKHRIAAVSVGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N +MTDSG VEVQG+AE+ FS ML LA+ IA+L +LQ+ ++ Sbjct: 179 EDSNAETDLNLIMTDSGGFVEVQGTAEQEPFSATELADMLKLAELGIANLSELQQQALAE 238 >gi|301155568|emb|CBW15036.1| ribonuclease PH (pseudogene) [Haemophilus parainfluenzae T3T1] Length = 238 Score = 347 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q R I +TR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T Sbjct: 1 MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + +N + +KG +AAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IANGTLKTNPIKGLIAAISVGIVEGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREALG 237 >gi|150388786|ref|YP_001318835.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF] gi|149948648|gb|ABR47176.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF] Length = 255 Score = 347 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R + T+ +K+A+GS LV+ G+T ++ TA +EE+VP +++N+ GW+TA Sbjct: 3 RVDGRKFDELRPVKFTKNYTKHAQGSVLVEMGETKVICTAMVEERVPHFLKNSGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+ G+ GR+QEIQR+IGRALRSV+DL ALG R I IDCDVIQA Sbjct: 63 EYSMLPSSTNTRKIRESSRGKIEGRTQEIQRLIGRALRSVIDLEALGERTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA++AL + + +++ K +K +V+AIS G++ P++DL Y E Sbjct: 123 DGGTRTASITGAFIALVEAINSVKEA--KKITYIPIKNYVSAISVGIVNDQPVLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VD N VMTD +EVQG+ E A FS+D +L L ++ A LI LQK+V+ + Sbjct: 181 DSKAMVDMNIVMTDMKEFIEVQGTGEEAPFSRDSLMELLRLGEEGNAQLIALQKEVLGS 239 >gi|169632071|ref|YP_001705807.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter baumannii SDF] gi|169797749|ref|YP_001715542.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter baumannii AYE] gi|184156383|ref|YP_001844722.1| ribonuclease PH [Acinetobacter baumannii ACICU] gi|213155451|ref|YP_002317496.1| ribonuclease PH [Acinetobacter baumannii AB0057] gi|215485100|ref|YP_002327341.1| ribonuclease PH [Acinetobacter baumannii AB307-0294] gi|239503769|ref|ZP_04663079.1| ribonuclease PH [Acinetobacter baumannii AB900] gi|260552994|ref|ZP_05825909.1| ribonuclease PH [Acinetobacter sp. RUH2624] gi|260557749|ref|ZP_05829963.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606] gi|301347449|ref|ZP_07228190.1| ribonuclease PH [Acinetobacter baumannii AB056] gi|301513309|ref|ZP_07238546.1| ribonuclease PH [Acinetobacter baumannii AB058] gi|301595797|ref|ZP_07240805.1| ribonuclease PH [Acinetobacter baumannii AB059] gi|332852852|ref|ZP_08434434.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150] gi|332866699|ref|ZP_08437161.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113] gi|332873553|ref|ZP_08441502.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059] gi|226736873|sp|B7H2J6|RNPH_ACIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736874|sp|B7IBN8|RNPH_ACIB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736875|sp|B2I029|RNPH_ACIBC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736876|sp|B0VMP4|RNPH_ACIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736877|sp|B0V5W8|RNPH_ACIBY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226737251|sp|A3M0U3|RNPH_ACIBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|169150676|emb|CAM88586.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter baumannii AYE] gi|169150863|emb|CAO99466.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Acinetobacter baumannii] gi|183207977|gb|ACC55375.1| RNase PH [Acinetobacter baumannii ACICU] gi|193075957|gb|ABO10537.2| ribonuclease PH [Acinetobacter baumannii ATCC 17978] gi|213054611|gb|ACJ39513.1| ribonuclease PH [Acinetobacter baumannii AB0057] gi|213986624|gb|ACJ56923.1| ribonuclease PH [Acinetobacter baumannii AB307-0294] gi|260405236|gb|EEW98733.1| ribonuclease PH [Acinetobacter sp. RUH2624] gi|260408922|gb|EEX02226.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606] gi|322506253|gb|ADX01707.1| RNase PH [Acinetobacter baumannii 1656-2] gi|323516129|gb|ADX90510.1| ribonuclease PH [Acinetobacter baumannii TCDC-AB0715] gi|332728966|gb|EGJ60317.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150] gi|332734468|gb|EGJ65583.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113] gi|332738250|gb|EGJ69128.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059] Length = 238 Score = 347 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + K LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT +G +E+QG+AE F++ AML +A+ IA+LIK Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEALG 237 >gi|90415478|ref|ZP_01223412.1| ribonuclease PH [marine gamma proteobacterium HTCC2207] gi|90332801|gb|EAS47971.1| ribonuclease PH [marine gamma proteobacterium HTCC2207] Length = 239 Score = 347 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ Q+R + +TR + +AEGS L++FG T ++ TA++ VP ++R GW+TA Sbjct: 3 RPSGRRPEQLRPVKITRDFTCHAEGSVLIEFGKTKVICTASVTPGVPRFLRGKGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+QEIQR+IGR+LR+ VD+ LG I IDCDVIQA Sbjct: 63 EYGMLPRSTGSRMDREAARGKQGGRTQEIQRLIGRSLRAAVDMKKLGEHTINIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VA+ D ++H++ K L L +A++S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGACVAMVDAIRHLQR--KKAILDDPLLCMIASVSVGIYKGTPVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VM G +EVQG+AE A FS++ AML LAK IADL+++QK ++ Sbjct: 181 DSKAETDMNVVMNSEGGFIEVQGTAEAAPFSEEELSAMLGLAKQGIADLVRVQKMALAQ 239 >gi|209883567|ref|YP_002287424.1| ribonuclease PH [Oligotropha carboxidovorans OM5] gi|226736922|sp|B6JCH9|RNPH_OLICO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|209871763|gb|ACI91559.1| ribonuclease PH [Oligotropha carboxidovorans OM5] Length = 238 Score = 347 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 146/239 (61%), Positives = 184/239 (76%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N++R +SL R V KYAEGSC+VKFGDT +L TATLEE++P W++ GW+T Sbjct: 1 MRPSGRAPNELRPVSLERGVVKYAEGSCMVKFGDTRVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T RV+REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATHERVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCLQ M+ N + VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLQWMK-ARNMLKNDNVLRDNVAAISCGIYNGTPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G +VEVQG+AER FSQ+ F ++ LA++ I L++LQK ++ Sbjct: 180 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQEEFLQLMALAQNGIGRLVELQKIAMA 238 >gi|91774399|ref|YP_544155.1| ribonuclease PH [Methylobacillus flagellatus KT] gi|122399230|sp|Q1GXA4|RNPH_METFK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91708386|gb|ABE48314.1| RNAse PH [Methylobacillus flagellatus KT] Length = 238 Score = 347 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 132/239 (55%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +Q+RE+ + R +K+AEGS LVKFGDTH+L TA++E+KVP ++R GW T Sbjct: 1 MRPSNRAPDQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASVEDKVPPFLRGRNQGWTT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+V+DL LG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAVIDLGKLGERTIHLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD + M +N L+ VAAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALHDAVGFM--LANDMIQESPLRDAVAAISVGVYQGTPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG VE+QG+AE F + ML LA+ I L+ QK+ + Sbjct: 179 EDSACDTDMNVVMTGSGGFVEIQGTAEGEPFQRAAMNRMLELAESGIRTLLLKQKEALG 237 >gi|313501268|gb|ADR62634.1| Rph [Pseudomonas putida BIRD-1] Length = 240 Score = 347 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ I ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGINEIFELQQAALAD 240 >gi|262281423|ref|ZP_06059204.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202] gi|262257249|gb|EEY75986.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202] Length = 238 Score = 347 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ +Q+RE+ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRELDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + S K LKG VAAIS GM ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT +G +E+QG+AE F++ AML +A+ IA+L+K Q++ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELVKKQQEALG 237 >gi|118593717|ref|ZP_01551092.1| ribonuclease PH [Stappia aggregata IAM 12614] gi|118433727|gb|EAV40389.1| ribonuclease PH [Stappia aggregata IAM 12614] Length = 237 Score = 347 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 144/238 (60%), Positives = 187/238 (78%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R GW+T Sbjct: 1 MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VV+L ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVNLEALGENQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC++ M+ + +VLK H+AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALRDCIEWMK--ARDMVSGEVLKDHIAAISCGIYEGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST + DANFV+T +G IVE+QG+AE A FS++ F ++ LAK I L+ LQK I Sbjct: 179 EDSTAETDANFVLTGAGGIVEIQGTAEGAPFSEEEFGKLMGLAKLGIGKLVDLQKMAI 236 >gi|58425360|gb|AAW74397.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331] Length = 305 Score = 347 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDTH+L TA++E +VP ++R GW+TA Sbjct: 69 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 128 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 129 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 188 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G+ G P++DLDY E Sbjct: 189 DGGTRTAAITGAYVALADAVNLLLKRGEIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 246 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + DL LQ+ ++ Sbjct: 247 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQRAALAG 305 >gi|297559365|ref|YP_003678339.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843813|gb|ADH65833.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 239 Score = 347 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR Q+R +++TR ++AEGS LV+FGDT +L A++E+ VP W R T GW+TA Sbjct: 3 RPDGRVPTQLRPVTITRNWLRHAEGSVLVEFGDTRVLCAASVEDGVPRWRRGTGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R++GR+LR+VVD A+G I +DCDV+QA Sbjct: 63 EYAMLPRSTDTRGSRESVRGKIGGRTHEISRLVGRSLRAVVDFKAMGEHTITLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + + + L G +AA+S G++ G P +DL+Y E Sbjct: 123 DGGTRTAAITGAYVALADAMKWLRK--RRKLKNNPLTGSLAAVSVGVVQGQPRLDLNYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N V+T G +EVQG+AE A F +D +L+LA +L +QK +S Sbjct: 181 DSVADTDMNVVITGDGKFIEVQGTAEGAPFDRDLLNQLLDLAVSGCGELTAIQKKALSE 239 >gi|269965906|ref|ZP_06179999.1| ribonuclease PH [Vibrio alginolyticus 40B] gi|269829459|gb|EEZ83700.1| ribonuclease PH [Vibrio alginolyticus 40B] Length = 240 Score = 347 bits (892), Expect = 7e-94, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 63 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDEVLCDLEYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 240 >gi|62263530|gb|AAX78169.1| unknown protein [synthetic construct] Length = 270 Score = 347 bits (892), Expect = 7e-94, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 162/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 27 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 86 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 87 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 146 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 147 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 206 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 207 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 258 >gi|254373825|ref|ZP_04989308.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548] gi|151571546|gb|EDN37200.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548] Length = 235 Score = 347 bits (891), Expect = 7e-94, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 161/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVSGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232 >gi|307943385|ref|ZP_07658729.1| ribonuclease PH [Roseibium sp. TrichSKD4] gi|307773015|gb|EFO32232.1| ribonuclease PH [Roseibium sp. TrichSKD4] Length = 237 Score = 347 bits (891), Expect = 7e-94, Method: Composition-based stats. Identities = 146/235 (62%), Positives = 186/235 (79%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R + GW+T Sbjct: 1 MRPSKRANDELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLEALGECQISVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+WVAL DC++ M+ + VLK H+AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGSWVALRDCIEWMK--ARDMVKKDVLKDHIAAISCGIHDGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST + DANFVMT SG IVE+QG+AE A FS++ F ++ LAK I L+ LQK Sbjct: 179 EDSTAETDANFVMTGSGGIVEIQGTAEGAPFSEEEFGQLMGLAKAGIGRLVDLQK 233 >gi|107022076|ref|YP_620403.1| ribonuclease PH [Burkholderia cenocepacia AU 1054] gi|116689020|ref|YP_834643.1| ribonuclease PH [Burkholderia cenocepacia HI2424] gi|170732309|ref|YP_001764256.1| ribonuclease PH [Burkholderia cenocepacia MC0-3] gi|254246044|ref|ZP_04939365.1| RNase PH [Burkholderia cenocepacia PC184] gi|123245179|sp|Q1BY75|RNPH_BURCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228269|sp|A0K5H3|RNPH_BURCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736892|sp|B1JXM2|RNPH_BURCC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|105892265|gb|ABF75430.1| RNAse PH [Burkholderia cenocepacia AU 1054] gi|116647109|gb|ABK07750.1| RNAse PH [Burkholderia cenocepacia HI2424] gi|124870820|gb|EAY62536.1| RNase PH [Burkholderia cenocepacia PC184] gi|169815551|gb|ACA90134.1| ribonuclease PH [Burkholderia cenocepacia MC0-3] Length = 246 Score = 347 bits (891), Expect = 7e-94, Method: Composition-based stats. Identities = 132/238 (55%), Positives = 172/238 (72%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT +L TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLIAAGKL--ARSPITDHVAAISVGVYEGAPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ IA+L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVLG 242 >gi|307730700|ref|YP_003907924.1| ribonuclease PH [Burkholderia sp. CCGE1003] gi|307585235|gb|ADN58633.1| ribonuclease PH [Burkholderia sp. CCGE1003] Length = 246 Score = 347 bits (891), Expect = 7e-94, Method: Composition-based stats. Identities = 127/238 (53%), Positives = 167/238 (70%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + + VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLLAAGHI--EGSPISDFVAAISVGIYDGVPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VE+QG+AE FS++ A+L+LA D IA LI QK+ + Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGIATLIARQKEALE 242 >gi|91225015|ref|ZP_01260274.1| ribonuclease PH [Vibrio alginolyticus 12G01] gi|91190261|gb|EAS76531.1| ribonuclease PH [Vibrio alginolyticus 12G01] Length = 238 Score = 347 bits (891), Expect = 7e-94, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GWIT Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDEVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238 >gi|229521070|ref|ZP_04410491.1| ribonuclease PH [Vibrio cholerae TM 11079-80] gi|229341955|gb|EEO06956.1| ribonuclease PH [Vibrio cholerae TM 11079-80] Length = 257 Score = 347 bits (891), Expect = 7e-94, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257 >gi|54307419|ref|YP_128439.1| putative ribonuclease PH [Photobacterium profundum SS9] gi|90412679|ref|ZP_01220680.1| putative ribonuclease PH [Photobacterium profundum 3TCK] gi|61215939|sp|Q6LVN8|RNPH_PHOPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|46911839|emb|CAG18637.1| putative ribonuclease PH [Photobacterium profundum SS9] gi|90326254|gb|EAS42673.1| putative ribonuclease PH [Photobacterium profundum 3TCK] Length = 238 Score = 347 bits (891), Expect = 7e-94, Method: Composition-based stats. Identities = 127/240 (52%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R I++TR + +AEGS LV+FGDT ++ TA++EE VP W++ GW+T Sbjct: 1 MRPSGRSTSQVRPITITRNFTAHAEGSVLVEFGDTKVICTASVEENVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREASSGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + M + + +KG VAA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGAMVALVDAVNSMIEKGTLKK--SPIKGMVAAVSVGIYKGEAICDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++E+QG+AE FS + AML LAKD IAD++ +QK + + Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGIADIVTMQKQALES 238 >gi|121593343|ref|YP_985239.1| ribonuclease PH [Acidovorax sp. JS42] gi|120605423|gb|ABM41163.1| RNAse PH [Acidovorax sp. JS42] Length = 244 Score = 347 bits (891), Expect = 7e-94, Method: Composition-based stats. Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R I +TR + +AEG+ L++FG+T +L TA++EEKVP R + GW+TA Sbjct: 8 RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I IDCDVIQA Sbjct: 68 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA D + + + L G VAA+S G++ G P++DL+Y E Sbjct: 128 DGGTRTAAITGAWVAAQDAVNTLLAAGKI--SASPLTGAVAAVSVGIVQGQPLLDLEYVE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D D N VMT +GH VEVQG+AE ATFS+ +L LA+ IA+L+ LQ+ + N Sbjct: 186 DVACDTDMNVVMTGTGHYVEVQGTAEGATFSRQEMDQLLALAEKGIAELLALQRQSLRN 244 >gi|78065577|ref|YP_368346.1| ribonuclease PH [Burkholderia sp. 383] gi|123569063|sp|Q39IL4|RNPH_BURS3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|77966322|gb|ABB07702.1| RNAse PH [Burkholderia sp. 383] Length = 243 Score = 347 bits (891), Expect = 8e-94, Method: Composition-based stats. Identities = 132/238 (55%), Positives = 172/238 (72%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ + +R+++LTR +K+AEGS LV+FGDT +L TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVSERVPDFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKI--TRSPITDHVAAISVGVYEGAPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ IA+L++LQKDV+ Sbjct: 185 DSQCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVLG 242 >gi|148981863|ref|ZP_01816548.1| ribonuclease PH [Vibrionales bacterium SWAT-3] gi|145960714|gb|EDK26055.1| ribonuclease PH [Vibrionales bacterium SWAT-3] Length = 238 Score = 347 bits (891), Expect = 8e-94, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D ++ + D + +KGHVAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAIKSLIDSGKLKK--NPMKGHVAAVSVGIVGAEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L LA IAD+++ QK +++ Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMKLLALANKGIADIVEAQKAALAD 238 >gi|28867317|ref|NP_789936.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000] gi|61216049|sp|Q88BE0|RNPH_PSESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|28850551|gb|AAO53631.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000] gi|331018562|gb|EGH98618.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 240 Score = 347 bits (891), Expect = 8e-94, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L ++Q+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 240 >gi|328675533|gb|AEB28208.1| Ribonuclease PH [Francisella cf. novicida 3523] Length = 235 Score = 347 bits (891), Expect = 8e-94, Method: Composition-based stats. Identities = 115/232 (49%), Positives = 162/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAA+S G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIKYMKQNGMLDEQANPLLSQVAAVSVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232 >gi|226942447|ref|YP_002797520.1| ribonuclease PH [Azotobacter vinelandii DJ] gi|259494117|sp|C1DI48|RNPH_AZOVD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226717374|gb|ACO76545.1| ribonuclease PH [Azotobacter vinelandii DJ] Length = 239 Score = 347 bits (891), Expect = 9e-94, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +++AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGKGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R+ REA GRQGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G PI+DLDY E Sbjct: 123 DGGTRTASITGAMVALVDALAVLKKRGAL--KGDPLKQMVAAVSVGIYQGEPILDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMTD+G +EVQG+AE F + AML LA I +L +LQ+ V+++ Sbjct: 181 DSDAETDLNVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALATQGIRELFELQRAVLAD 239 >gi|315127898|ref|YP_004069901.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp. SM9913] gi|315016412|gb|ADT69750.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp. SM9913] Length = 237 Score = 347 bits (891), Expect = 9e-94, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GW+ Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWVN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRATHTRNSREATRGKQGGRTMEIQRLIARSLRAAIDLKALGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L +M + S LK +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALTYMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N ++T++G I+EVQG+AE FS D +L LAK I ++I +QK ++ Sbjct: 179 EDSDAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237 >gi|300856830|ref|YP_003781814.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528] gi|300436945|gb|ADK16712.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528] Length = 248 Score = 347 bits (891), Expect = 9e-94, Method: Composition-based stats. Identities = 112/239 (46%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ +Q+R I +TR +KYAEGS L++ GDT ++ TA++E++VP +++ GWIT Sbjct: 1 MRIDGRKYDQIRPIKITRDYTKYAEGSVLIETGDTKVICTASIEDRVPPFLKGKGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R R+ G+ GR+ EIQR+IGRALRSVVDL A+G + I +DCDVIQ Sbjct: 61 CEYNMLPRATQVRKIRDITKGKIDGRTMEIQRIIGRALRSVVDLKAMGEKTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA+VAL D + + + ++ V+AIS G++ ++DL Y Sbjct: 121 ADGGTRTASISGAFVALVDAVNKLHKRTPFTVY--PIRDFVSAISVGIVNNVRMLDLCYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMTDSG VE+QG+ E++ F++D +L L + I ++I QK+ + Sbjct: 179 EDSRAQVDMNIVMTDSGEFVEIQGTGEQSPFTRDDLQELLRLGEKGINNMIHAQKESLK 237 >gi|328471748|gb|EGF42625.1| ribonuclease PH [Vibrio parahaemolyticus 10329] Length = 238 Score = 347 bits (890), Expect = 9e-94, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDEVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I ++I QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIIAAQKAALAN 238 >gi|95113322|emb|CAK18050.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase [Pseudomonas entomophila L48] Length = 253 Score = 347 bits (890), Expect = 9e-94, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 16 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 76 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 136 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 194 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 195 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 253 >gi|120597163|ref|YP_961737.1| ribonuclease PH [Shewanella sp. W3-18-1] gi|146291563|ref|YP_001181987.1| ribonuclease PH [Shewanella putrefaciens CN-32] gi|166228319|sp|A4Y2K5|RNPH_SHEPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228321|sp|A1RET8|RNPH_SHESW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|120557256|gb|ABM23183.1| RNAse PH [Shewanella sp. W3-18-1] gi|145563253|gb|ABP74188.1| RNAse PH [Shewanella putrefaciens CN-32] gi|319424735|gb|ADV52809.1| ribonuclease PH [Shewanella putrefaciens 200] Length = 237 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE F+ + +L LAK+ I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQKAALN 237 >gi|17988058|ref|NP_540692.1| ribonuclease PH [Brucella melitensis bv. 1 str. 16M] gi|225851706|ref|YP_002731939.1| ribonuclease PH [Brucella melitensis ATCC 23457] gi|256045962|ref|ZP_05448834.1| ribonuclease PH [Brucella melitensis bv. 1 str. Rev.1] gi|256112675|ref|ZP_05453596.1| ribonuclease PH [Brucella melitensis bv. 3 str. Ether] gi|256264784|ref|ZP_05467316.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|260563245|ref|ZP_05833731.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|265992375|ref|ZP_06104932.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265994118|ref|ZP_06106675.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether] gi|21759402|sp|Q8YEV2|RNPH_BRUME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808582|sp|C0RGM7|RNPH_BRUMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|17983807|gb|AAL52956.1| ribonuclease ph [Brucella melitensis bv. 1 str. 16M] gi|225640071|gb|ACN99984.1| ribonuclease PH [Brucella melitensis ATCC 23457] gi|260153261|gb|EEW88353.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|262765099|gb|EEZ11020.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263003441|gb|EEZ15734.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|263095193|gb|EEZ18862.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|326408195|gb|ADZ65260.1| ribonuclease PH [Brucella melitensis M28] gi|326537910|gb|ADZ86125.1| ribonuclease PH [Brucella melitensis M5-90] Length = 238 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 151/239 (63%), Positives = 188/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T Sbjct: 1 MRPSKRAADEMRTISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG WVALH+CL+ ME ++ +VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFVMT G IVE+QG+AE FS++ F A++ LA+ I L+ LQK ++ Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238 >gi|332308581|ref|YP_004436432.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175910|gb|AEE25164.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5] Length = 237 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R +++TR + +AEGS L++FG+T +L A++ E VP +++ GW+T Sbjct: 1 MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL LG I++DCDVIQ Sbjct: 61 AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M S + +K +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTWMR--SKGIIKTNPMKHMIAAISVGIYKGNAIADLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMTD+G ++EVQG+AE FS + ML LAK I +L QK ++ Sbjct: 179 EDSDAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQKAALN 237 >gi|254228598|ref|ZP_04922023.1| ribonuclease PH [Vibrio sp. Ex25] gi|151938980|gb|EDN57813.1| ribonuclease PH [Vibrio sp. Ex25] Length = 240 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 63 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDDVLCDLEYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALAN 240 >gi|251793341|ref|YP_003008069.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700] gi|247534736|gb|ACS97982.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700] Length = 238 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ R I +TR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPNQRANNQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGLGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N LKG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALCDALNGL--VANGTLSKNPLKGLVAAISVGIVDGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ +++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDIIFQTQRAALAD 238 >gi|325524722|gb|EGD02709.1| ribonuclease PH [Burkholderia sp. TJI49] Length = 246 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 130/238 (54%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ + +R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ERSPIVDHVAAISVGVYEGTPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I +L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGELVQLQKDVLG 242 >gi|62289149|ref|YP_220942.1| ribonuclease PH [Brucella abortus bv. 1 str. 9-941] gi|82699088|ref|YP_413662.1| ribonuclease PH [Brucella melitensis biovar Abortus 2308] gi|148559274|ref|YP_001258205.1| ribonuclease PH [Brucella ovis ATCC 25840] gi|161618161|ref|YP_001592048.1| ribonuclease PH [Brucella canis ATCC 23365] gi|163842442|ref|YP_001626846.1| ribonuclease PH [Brucella suis ATCC 23445] gi|189023423|ref|YP_001934191.1| ribonuclease PH [Brucella abortus S19] gi|225626711|ref|ZP_03784750.1| ribonuclease PH [Brucella ceti str. Cudo] gi|237814642|ref|ZP_04593640.1| ribonuclease PH [Brucella abortus str. 2308 A] gi|254690474|ref|ZP_05153728.1| ribonuclease PH [Brucella abortus bv. 6 str. 870] gi|254694963|ref|ZP_05156791.1| ribonuclease PH [Brucella abortus bv. 3 str. Tulya] gi|254696594|ref|ZP_05158422.1| ribonuclease PH [Brucella abortus bv. 2 str. 86/8/59] gi|254700978|ref|ZP_05162806.1| ribonuclease PH [Brucella suis bv. 5 str. 513] gi|254705349|ref|ZP_05167177.1| ribonuclease PH [Brucella suis bv. 3 str. 686] gi|254707138|ref|ZP_05168966.1| ribonuclease PH [Brucella pinnipedialis M163/99/10] gi|254709319|ref|ZP_05171130.1| ribonuclease PH [Brucella pinnipedialis B2/94] gi|254713260|ref|ZP_05175071.1| ribonuclease PH [Brucella ceti M644/93/1] gi|254716387|ref|ZP_05178198.1| ribonuclease PH [Brucella ceti M13/05/1] gi|254718387|ref|ZP_05180198.1| ribonuclease PH [Brucella sp. 83/13] gi|254731507|ref|ZP_05190085.1| ribonuclease PH [Brucella abortus bv. 4 str. 292] gi|256030842|ref|ZP_05444456.1| ribonuclease PH [Brucella pinnipedialis M292/94/1] gi|256060312|ref|ZP_05450485.1| ribonuclease PH [Brucella neotomae 5K33] gi|256158871|ref|ZP_05456725.1| ribonuclease PH [Brucella ceti M490/95/1] gi|256254248|ref|ZP_05459784.1| ribonuclease PH [Brucella ceti B1/94] gi|256258730|ref|ZP_05464266.1| ribonuclease PH [Brucella abortus bv. 9 str. C68] gi|256368637|ref|YP_003106143.1| ribonuclease PH [Brucella microti CCM 4915] gi|260169746|ref|ZP_05756557.1| ribonuclease PH [Brucella sp. F5/99] gi|260546446|ref|ZP_05822186.1| ribonuclease PH [Brucella abortus NCTC 8038] gi|260567190|ref|ZP_05837660.1| ribonuclease PH [Brucella suis bv. 4 str. 40] gi|260756028|ref|ZP_05868376.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870] gi|260759252|ref|ZP_05871600.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292] gi|260760975|ref|ZP_05873318.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260885049|ref|ZP_05896663.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68] gi|261215305|ref|ZP_05929586.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261218173|ref|ZP_05932454.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1] gi|261221399|ref|ZP_05935680.1| tRNA nucleotidyltransferase [Brucella ceti B1/94] gi|261314614|ref|ZP_05953811.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10] gi|261316830|ref|ZP_05956027.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94] gi|261320979|ref|ZP_05960176.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1] gi|261324287|ref|ZP_05963484.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33] gi|261751499|ref|ZP_05995208.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513] gi|261756063|ref|ZP_05999772.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686] gi|261759287|ref|ZP_06002996.1| ribonuclease PH [Brucella sp. F5/99] gi|265983351|ref|ZP_06096086.1| tRNA nucleotidyltransferase [Brucella sp. 83/13] gi|265987900|ref|ZP_06100457.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1] gi|265997361|ref|ZP_06109918.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1] gi|294851571|ref|ZP_06792244.1| ribonuclease PH [Brucella sp. NVSL 07-0026] gi|297247565|ref|ZP_06931283.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196] gi|306839620|ref|ZP_07472424.1| ribonuclease PH [Brucella sp. NF 2653] gi|306842542|ref|ZP_07475193.1| ribonuclease PH [Brucella sp. BO2] gi|306844440|ref|ZP_07477030.1| ribonuclease PH [Brucella sp. BO1] gi|75497456|sp|Q57FK3|RNPH_BRUAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123546812|sp|Q2YP33|RNPH_BRUA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228268|sp|A5VNA8|RNPH_BRUO2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043754|sp|A9M7B8|RNPH_BRUC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043755|sp|B0CJ32|RNPH_BRUSI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736890|sp|B2S8G4|RNPH_BRUA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|62195281|gb|AAX73581.1| Rph, ribonuclease PH [Brucella abortus bv. 1 str. 9-941] gi|82615189|emb|CAJ10128.1| 3' exoribonuclease:Ribonuclease PH [Brucella melitensis biovar Abortus 2308] gi|148370531|gb|ABQ60510.1| ribonuclease PH [Brucella ovis ATCC 25840] gi|161334972|gb|ABX61277.1| ribonuclease PH [Brucella canis ATCC 23365] gi|163673165|gb|ABY37276.1| ribonuclease PH [Brucella suis ATCC 23445] gi|189018995|gb|ACD71717.1| Ribonuclease PH [Brucella abortus S19] gi|225618368|gb|EEH15411.1| ribonuclease PH [Brucella ceti str. Cudo] gi|237789479|gb|EEP63689.1| ribonuclease PH [Brucella abortus str. 2308 A] gi|255998795|gb|ACU47194.1| ribonuclease PH [Brucella microti CCM 4915] gi|260096553|gb|EEW80429.1| ribonuclease PH [Brucella abortus NCTC 8038] gi|260156708|gb|EEW91788.1| ribonuclease PH [Brucella suis bv. 4 str. 40] gi|260669570|gb|EEX56510.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292] gi|260671407|gb|EEX58228.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260676136|gb|EEX62957.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870] gi|260874577|gb|EEX81646.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68] gi|260916912|gb|EEX83773.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260919983|gb|EEX86636.1| tRNA nucleotidyltransferase [Brucella ceti B1/94] gi|260923262|gb|EEX89830.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1] gi|261293669|gb|EEX97165.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1] gi|261296053|gb|EEX99549.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94] gi|261300267|gb|EEY03764.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33] gi|261303640|gb|EEY07137.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10] gi|261739271|gb|EEY27267.1| ribonuclease PH [Brucella sp. F5/99] gi|261741252|gb|EEY29178.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513] gi|261745816|gb|EEY33742.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686] gi|262551829|gb|EEZ07819.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1] gi|264660097|gb|EEZ30358.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1] gi|264661943|gb|EEZ32204.1| tRNA nucleotidyltransferase [Brucella sp. 83/13] gi|294820160|gb|EFG37159.1| ribonuclease PH [Brucella sp. NVSL 07-0026] gi|297174734|gb|EFH34081.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196] gi|306275253|gb|EFM57003.1| ribonuclease PH [Brucella sp. BO1] gi|306287398|gb|EFM58878.1| ribonuclease PH [Brucella sp. BO2] gi|306405318|gb|EFM61593.1| ribonuclease PH [Brucella sp. NF 2653] Length = 238 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 151/239 (63%), Positives = 188/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T Sbjct: 1 MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG WVALH+CL+ ME ++ +VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFVMT G IVE+QG+AE FS++ F A++ LA+ I L+ LQK ++ Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238 >gi|332532804|ref|ZP_08408678.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505] gi|332037831|gb|EGI74281.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505] Length = 237 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GWI Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L HM + S LK +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N ++T++G I+E+QG+AE FS D +L LAK I ++I +QK ++ Sbjct: 179 EDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237 >gi|72162764|ref|YP_290421.1| ribonuclease PH [Thermobifida fusca YX] gi|71916496|gb|AAZ56398.1| RNAse PH [Thermobifida fusca YX] Length = 239 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R + +TR ++AEGS L++FG+T +L AT+EE VP W R T GW+TA Sbjct: 3 RPDGRTPNQLRPVRITRNWLRHAEGSALIEFGETRVLCAATVEEGVPRWRRGTGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD A+G I +DCDV+QA Sbjct: 63 EYAMLPRATDTRSARESVKGKIGGRTHEISRLIGRSLRAVVDFKAMGEYTITLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++++ + + L G VAA+S G++ G P +DL+Y E Sbjct: 123 DGGTRTAAITGAYVALVDAVRYLRKQLDL--KTNPLTGSVAAVSVGIVQGQPRLDLNYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N V+T +G +E+QG+AE A F + +L+LA A+L ++QK +S Sbjct: 181 DSVAETDMNVVVTGTGEFIEIQGTAENAPFDRKLLDTLLDLAVAGCAELTEIQKKALSE 239 >gi|61215919|sp|Q6FFX5|RNPH_ACIAD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase Length = 238 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL R +Q+R++ +TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + + K LKG VAAIS G+ ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALIDAMNVLLE--KKKIKQDPLKGLVAAISVGIYQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT +G +E+QG+AE F++ AML +A+ I +LIK Q+ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQALG 237 >gi|220932375|ref|YP_002509283.1| ribonuclease PH [Halothermothrix orenii H 168] gi|219993685|gb|ACL70288.1| ribonuclease PH [Halothermothrix orenii H 168] Length = 246 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+ +Q+R++ ++R+ +KYAEGS L++ GDT ++ TA++EE VP ++R GW+T Sbjct: 7 LRVDGRKNDQLRDVKISRQYTKYAEGSVLIETGDTKVICTASVEESVPPFLRGQNTGWLT 66 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST +R RE GR GR+QEIQR+IGR+LR+VVDL LG R I +DCDVIQ Sbjct: 67 AEYSLLPRSTHSRTIREVARGRLSGRTQEIQRLIGRSLRAVVDLGKLGERTIWVDCDVIQ 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + ++ + L +AA S G++ G ++DL Y Sbjct: 127 ADGGTRTASITGAYVALVDAINYLIE--EGVLEESPLNSFMAATSVGVVDGEMLLDLCYE 184 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED VD N VMT+ G ++E+QG+AE+ FS+D +++LA+ I +L+ QK + Sbjct: 185 EDFQAQVDMNIVMTEDGRVIEIQGTAEKFPFSRDQMNTLMDLAEKGIRELVSFQKKSLG 243 >gi|88705452|ref|ZP_01103163.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71] gi|88700542|gb|EAQ97650.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71] Length = 269 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 125/239 (52%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R+IS+ R+ + +AEGS LV FG+T ++ TA++E+ VP ++R GWITA Sbjct: 32 RPSGRAPDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITA 91 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+QEIQR+IGR+LR+ VDLS LG I +DCDVIQA Sbjct: 92 EYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQA 151 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ +K + L+ VA++S G+ G ++DLDY E Sbjct: 152 DGGTRTASITGAFVALVDAINGLQR--DKKISTDPLRHFVASVSVGVYQGEAVLDLDYPE 209 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM + G +EVQG+AE A FS+ ML+LA IA LI Q+ ++ Sbjct: 210 DSKADTDLNVVMAEGGEFIEVQGTAEAAPFSRTDLDKMLDLASGGIATLIDCQRAALAT 268 >gi|222110072|ref|YP_002552336.1| ribonuclease ph [Acidovorax ebreus TPSY] gi|221729516|gb|ACM32336.1| ribonuclease PH [Acidovorax ebreus TPSY] Length = 244 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R I +TR + +AEG+ L++FG+T +L TA++EEKVP R + GW+TA Sbjct: 8 RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I IDCDVIQA Sbjct: 68 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA D + + + L G VAA+S G++ G P++DL+Y E Sbjct: 128 DGGTRTAAITGAWVAAQDAVNTLLAAGKI--SASPLTGAVAAVSVGIVQGQPLLDLEYVE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D D N VMT +GH VEVQG+AE A FS+ +L LA+ IA+L+ LQ+ + N Sbjct: 186 DVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRQEMDQLLALAEKGIAELVALQRQSLRN 244 >gi|332141636|ref|YP_004427374.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype'] gi|332143438|ref|YP_004429176.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype'] gi|226736881|sp|B4S201|RNPH_ALTMD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|327551658|gb|AEA98376.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype'] gi|327553460|gb|AEB00179.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype'] Length = 237 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R +++TR+ + +AEGS LV+FG+T +L AT+EE VP +++ GW+T Sbjct: 1 MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDVIQ Sbjct: 61 AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L +M S + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--SKGIIKTNPLKHMIAALSVGIYEGTPIADLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++EVQG+AE FS + +L + K + +L +QK ++ Sbjct: 179 EDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDELLKIGKHGLRELFDIQKAALA 237 >gi|148653988|ref|YP_001281081.1| ribonuclease PH [Psychrobacter sp. PRwf-1] gi|172048586|sp|A5WHJ0|RNPH_PSYWF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|148573072|gb|ABQ95131.1| RNAse PH [Psychrobacter sp. PRwf-1] Length = 238 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ +Q+R ++ R +K+AEGS LV FGDT +L TA++E VP W++ GW+T Sbjct: 1 MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASVEAGVPRWLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR++VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLTKLGENTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +AL D L+ ++ K + L G VAA+S G+ G ++DL+Y Sbjct: 121 ADGGTRTASITGAAIALIDALEVLQQ--KKKLKADPLIGLVAAVSVGVKNGEVLLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ D D N VMT G +E+QG+AE F++ ML +A+ IADL+KLQ+ + Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLVKLQQTALG 237 >gi|262370973|ref|ZP_06064296.1| ribonuclease PH [Acinetobacter johnsonii SH046] gi|262314049|gb|EEY95093.1| ribonuclease PH [Acinetobacter johnsonii SH046] Length = 238 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R +Q+R++++TR ++YAEGS LV+FG T +L TA+++ VP +++ GW+T Sbjct: 1 MRIDQRTLDQLRDVTITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + + K LKG VAAIS G+ ++DL Y Sbjct: 121 ADGGTRTAAITGAAVALIDAMNTLLE--KKKIKQDPLKGLVAAISVGIFQDEVLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMT +G +E+QG+AE F++ AML +A+ I +L+K Q+ + Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRVQCNAMLEMAEKGIQELVKKQQQALG 237 >gi|262392601|ref|YP_003284455.1| ribonuclease PH [Vibrio sp. Ex25] gi|262336195|gb|ACY49990.1| ribonuclease PH [Vibrio sp. Ex25] Length = 238 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALAN 238 >gi|91791686|ref|YP_561337.1| ribonuclease PH [Shewanella denitrificans OS217] gi|123357198|sp|Q12SG2|RNPH_SHEDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91713688|gb|ABE53614.1| RNAse PH [Shewanella denitrificans OS217] Length = 237 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSKRTPAQTRPITITRNFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VA+ D L + S LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTAAITGACVAMVDALNWAR--AKNIIKSNPLKFLIAAVSVGIYKGEAISDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+EVQG+AE FS + +L LAK+ I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEVQGTAEGEPFSHEELNELLGLAKNSIREIVDVQKSALN 237 >gi|46201192|ref|ZP_00055593.2| COG0689: RNase PH [Magnetospirillum magnetotacticum MS-1] Length = 239 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 135/239 (56%), Positives = 170/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + L VS++AEGSC+ KFGDTH+L TA++EEKVP ++RNT GW+T Sbjct: 1 MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+ EIQR+IGR+LRSV DL A+G RQI IDCDV+Q Sbjct: 61 AEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLVAMGERQIKIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALH Q + + L HVAAISCG+ G ++DLDY Sbjct: 121 ADGGTRTASITGAFVALHLAFQRLVRLE--LLKAIPLTDHVAAISCGIYEGTAVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT +G IVE+QG+AE FS+ F + +LA+ I L++ QK + Sbjct: 179 EDSNAQADANFVMTGNGGIVEIQGTAEERPFSRAQFLELTDLAEAGIRQLVEAQKKALG 237 >gi|326797277|ref|YP_004315097.1| ribonuclease PH [Marinomonas mediterranea MMB-1] gi|326548041|gb|ADZ93261.1| Ribonuclease PH [Marinomonas mediterranea MMB-1] Length = 241 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 114/238 (47%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + TR +K+AEGS L++ GDT ++ TAT+ VP +++ GWIT Sbjct: 1 MRPSGRAADQLRPMKFTRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAIDLKKLGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +VAL D ++ + + K + +AAIS G+ G P++DLDY Sbjct: 121 ADGGTRTASISGGFVALADAVKTLVE--QKKLKENPIVSQIAAISVGVYKGTPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N +M D G +E+QG+AE A F + ML++A+ I +++++Q+ V+ Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGAAFGDEQMMGMLSVARKGINEIMEMQRQVL 236 >gi|307329928|ref|ZP_07609081.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113] gi|306884419|gb|EFN15452.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113] Length = 243 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 114/241 (47%), Positives = 157/241 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYAMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIGWARGKKLIKATRQPLTGTVSAVSVGIVGGIPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D + D N V T G VEVQG+AE F+++ +L+LA L +Q+ ++ E Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCETLAGIQRAALALE 242 Query: 242 V 242 + Sbjct: 243 M 243 >gi|56707964|ref|YP_169860.1| ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4] gi|110670435|ref|YP_666992.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC198] gi|134302244|ref|YP_001122213.1| ribonuclease PH [Francisella tularensis subsp. tularensis WY96-3418] gi|208780450|ref|ZP_03247790.1| ribonuclease PH [Francisella novicida FTG] gi|224457045|ref|ZP_03665518.1| ribonuclease PH [Francisella tularensis subsp. tularensis MA00-2987] gi|254370452|ref|ZP_04986457.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033] gi|254372353|ref|ZP_04987844.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|254874766|ref|ZP_05247476.1| ribonuclease PH [Francisella tularensis subsp. tularensis MA00-2987] gi|61215787|sp|Q5NGI2|RNPH_FRATT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123169418|sp|Q14HY4|RNPH_FRAT1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228282|sp|A4IYU1|RNPH_FRATW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|54112559|gb|AAV28913.1| NT02FT0689 [synthetic construct] gi|56604456|emb|CAG45491.1| Ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4] gi|110320768|emb|CAL08874.1| Ribonuclease PH [Francisella tularensis subsp. tularensis FSC198] gi|134050021|gb|ABO47092.1| ribonuclease PH [Francisella tularensis subsp. tularensis WY96-3418] gi|151568695|gb|EDN34349.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033] gi|151570082|gb|EDN35736.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3549] gi|208743596|gb|EDZ89900.1| ribonuclease PH [Francisella novicida FTG] gi|254840765|gb|EET19201.1| ribonuclease PH [Francisella tularensis subsp. tularensis MA00-2987] gi|282159150|gb|ADA78541.1| ribonuclease PH [Francisella tularensis subsp. tularensis NE061598] Length = 235 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 162/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232 >gi|152979839|ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marseille] gi|151279916|gb|ABR88326.1| ribonuclease PH [Janthinobacterium sp. Marseille] Length = 244 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 125/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R I LTR +K+AEGS L++ GDT ++ TA++E++VP +++ GW+TA Sbjct: 6 RPSGRAADALRAIKLTRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ DL A G R + +DCDVIQA Sbjct: 66 EYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG VA +D + + + LK VAAIS G+ G P++DLDY E Sbjct: 126 DGGTRTAAITGTMVAAYDAFSKL--VAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMTD+GH +EVQG+AE A F + +L+LA+D I DLI LQK ++ Sbjct: 184 DSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDKLLDLAQDGIRDLIVLQKQALA 241 >gi|254252975|ref|ZP_04946293.1| RNase PH [Burkholderia dolosa AUO158] gi|124895584|gb|EAY69464.1| RNase PH [Burkholderia dolosa AUO158] Length = 246 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 130/238 (54%), Positives = 172/238 (72%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPDFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDV QA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVTQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLIAAGKLVR--SPITDHVAAISVGVYEGVPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGRLVQLQKDVLG 242 >gi|182438431|ref|YP_001826150.1| ribonuclease PH [Streptomyces griseus subsp. griseus NBRC 13350] gi|226736942|sp|B1VVV6|RNPH_STRGG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|178466947|dbj|BAG21467.1| putative ribonuclease PH [Streptomyces griseus subsp. griseus NBRC 13350] Length = 245 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 117/237 (49%), Positives = 154/237 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R REAV G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L VAAIS G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V T G VEVQG+AE A F + A+L+LA DL LQ+D + Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAALQRDAL 239 >gi|315121831|ref|YP_004062320.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495233|gb|ADR51832.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 250 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 202/240 (84%), Positives = 228/240 (95%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL GR+ENQMREIS TR +SK+AEGSCLVKFG+THLLTTATLEEKVP+W+RNTK+GWIT Sbjct: 3 MRLLGRKENQMREISFTRGISKHAEGSCLVKFGETHLLTTATLEEKVPIWLRNTKNGWIT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+KREAVSGRQGGR+QEIQR+IGR+LRS+VDLSALG RQIIIDCDVIQ Sbjct: 63 AEYGMLPRSTGSRIKREAVSGRQGGRTQEIQRLIGRSLRSIVDLSALGPRQIIIDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAW+ALHDCLQHMED ++KFQLSQVLKGHVAAISCG+L G PIVDL+Y Sbjct: 123 ADGGTRTAAITGAWIALHDCLQHMEDRNSKFQLSQVLKGHVAAISCGILSGNPIVDLNYE 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ID DANFVMTD+G+IVE+Q SAE+ATFSQD FF+MLNLAKDRI+DLI+LQKDVIS Sbjct: 183 EDSSIDADANFVMTDAGNIVEIQVSAEKATFSQDQFFSMLNLAKDRISDLIRLQKDVISG 242 >gi|238026484|ref|YP_002910715.1| ribonuclease PH [Burkholderia glumae BGR1] gi|237875678|gb|ACR28011.1| Ribonuclease PH [Burkholderia glumae BGR1] Length = 243 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 130/236 (55%), Positives = 170/236 (72%), Gaps = 2/236 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+RE+ LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRQADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+VVDL LG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEHLGPRTIHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ D + + ++ + VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAVQDAVAKL--VADGKLPRSPISDSVAAISVGVYQGTPLLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DS D D N VMT +G +VEVQG+AE A F++ A+L+LA+ I +LI LQK Sbjct: 185 DSRCDTDMNVVMTGAGGLVEVQGTAEGAPFTRAEMDALLDLAQKGIGELIALQKAA 240 >gi|145637126|ref|ZP_01792788.1| ribonuclease PH [Haemophilus influenzae PittHH] gi|145640205|ref|ZP_01795789.1| ribonuclease PH [Haemophilus influenzae R3021] gi|148825447|ref|YP_001290200.1| ribonuclease PH [Haemophilus influenzae PittEE] gi|229846361|ref|ZP_04466469.1| ribonuclease PH [Haemophilus influenzae 7P49H1] gi|166228284|sp|A5UAL6|RNPH_HAEIE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145269571|gb|EDK09512.1| ribonuclease PH [Haemophilus influenzae PittHH] gi|145274791|gb|EDK14653.1| ribonuclease PH [Haemophilus influenzae 22.4-21] gi|148715607|gb|ABQ97817.1| ribonuclease PH [Haemophilus influenzae PittEE] gi|229810454|gb|EEP46172.1| ribonuclease PH [Haemophilus influenzae 7P49H1] gi|309972566|gb|ADO95767.1| Ribonuclease PH [Haemophilus influenzae R2846] Length = 238 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237 >gi|257454134|ref|ZP_05619407.1| ribonuclease PH [Enhydrobacter aerosaccus SK60] gi|257448462|gb|EEV23432.1| ribonuclease PH [Enhydrobacter aerosaccus SK60] Length = 238 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ NQ+R +S R +K+AEG+ LV +GDT +L TA++E +VP W++ T GWIT Sbjct: 1 MRIDNRENNQLRPMSFVRNFTKHAEGAVLVSYGDTKVLCTASIETQVPRWLKGTGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDV+Q Sbjct: 61 AEYGMLPRATHERTQREAAKGKQSGRTQEIQRLIGRSLRAMVDLEKLGENTIHIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L+ ++ + K + L G VAA+S G+ G ++DL+Y Sbjct: 121 ADGGTRTASITGAAVALVDALEKLQ--AAKKLKADPLVGLVAAVSVGIKNGEVLLDLNYS 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ D D N VMT G +E+QG+AE F++ ML +A++ I LI Q+ V+ Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAQADEMLAIAEEGIKQLIAEQQAVLG 237 >gi|153837893|ref|ZP_01990560.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810] gi|260902523|ref|ZP_05910918.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037] gi|149748756|gb|EDM59601.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810] gi|308109638|gb|EFO47178.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037] Length = 238 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDEVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238 >gi|89255778|ref|YP_513140.1| ribonuclease PH [Francisella tularensis subsp. holarctica LVS] gi|115314270|ref|YP_762993.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156501746|ref|YP_001427811.1| ribonuclease PH [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009694|ref|ZP_02274625.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC200] gi|254367139|ref|ZP_04983171.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257] gi|290954430|ref|ZP_06559051.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1] gi|295312131|ref|ZP_06802940.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1] gi|122325696|sp|Q0BNH8|RNPH_FRATO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|122501188|sp|Q2A562|RNPH_FRATH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228280|sp|A7NA52|RNPH_FRATF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|89143609|emb|CAJ78797.1| Ribonuclease PH [Francisella tularensis subsp. holarctica LVS] gi|115129169|gb|ABI82356.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134252961|gb|EBA52055.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257] gi|156252349|gb|ABU60855.1| ribonuclease PH [Francisella tularensis subsp. holarctica FTNF002-00] Length = 235 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 162/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232 >gi|220936120|ref|YP_002515019.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7] gi|254808601|sp|B8GPB2|RNPH_THISH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|219997430|gb|ACL74032.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7] Length = 239 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 128/240 (53%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+REI TRR +K+AEGS LV+FGDT +L TA+++++ P W+RN GW+T Sbjct: 1 MRPSGRQPDQLREIRFTRRFTKHAEGSVLVEFGDTRVLCTASVDDRTPPWLRNKGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+QGGR+QEIQR+IGR+LR+ VDL LG RQI +DCDV+Q Sbjct: 61 AEYGMLPRSTHERMAREAARGKQGGRTQEIQRLIGRSLRAAVDLEGLGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +VALHD + H+ L G VA++S G+ G P++DLDY Sbjct: 121 ADGGTRTASISGGYVALHDAITHLMKQGKL--KRNPLFGAVASVSVGIYQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM D+ +EVQG+AE F D +ML LA+ I D+I Q+ + Sbjct: 179 EDSNAETDMNVVMNDANAFIEVQGTAEGHAFRMDELNSMLALAQSGIQDIIAAQRAALEQ 238 >gi|328676457|gb|AEB27327.1| Ribonuclease PH [Francisella cf. novicida Fx1] Length = 235 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 161/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232 >gi|325272059|ref|ZP_08138496.1| ribonuclease PH [Pseudomonas sp. TJI-51] gi|324102805|gb|EGC00215.1| ribonuclease PH [Pseudomonas sp. TJI-51] Length = 240 Score = 346 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMTEIFELQQAALAD 240 >gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258602199|gb|EEW15513.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 256 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 161/241 (66%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R + +TR + GS LV+FG+T ++ TA++EE VP + +++ GW+TA Sbjct: 18 RADGRATNELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R+ RE++ G+ GR+QEI R++GRALR+ VDL LG + IDCDV+QA Sbjct: 78 EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L ++ + Q L+ VAA+S G++ G P +DL Y E Sbjct: 138 DGGTRTAAITGAYVALADALAVLQ--ARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEE 195 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N MT G VE+QG+ E A F+++ +L+LA+ + +LI+ Q+ ++ E Sbjct: 196 DSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQE 255 Query: 242 V 242 + Sbjct: 256 L 256 >gi|162139697|ref|YP_610833.2| ribonuclease PH [Pseudomonas entomophila L48] Length = 240 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 240 >gi|261213164|ref|ZP_05927447.1| ribonuclease PH [Vibrio sp. RC341] gi|260837582|gb|EEX64276.1| ribonuclease PH [Vibrio sp. RC341] Length = 238 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKK--NPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238 >gi|167854865|ref|ZP_02477642.1| ribonuclease PH [Haemophilus parasuis 29755] gi|167854044|gb|EDS25281.1| ribonuclease PH [Haemophilus parasuis 29755] Length = 244 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALHDAINKL--IADGLLKENPMKGLVAAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA+ I L + Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQALN 237 >gi|258625880|ref|ZP_05720755.1| ribonuclease PH [Vibrio mimicus VM603] gi|258581844|gb|EEW06718.1| ribonuclease PH [Vibrio mimicus VM603] Length = 238 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKK--NPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238 >gi|299133261|ref|ZP_07026456.1| ribonuclease PH [Afipia sp. 1NLS2] gi|298593398|gb|EFI53598.1| ribonuclease PH [Afipia sp. 1NLS2] Length = 238 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 145/239 (60%), Positives = 185/239 (77%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSGRAPDELRPVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +RV+REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATHDRVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCLQ M+ N + VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLQWMK-ARNMLKNDNVLRDNVAAISCGIHNGTPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G +VEVQG+AER FSQD F ++ LA+ + L++LQK ++ Sbjct: 180 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLKLMALAQSGVGRLVELQKIAMA 238 >gi|219871463|ref|YP_002475838.1| ribonuclease PH [Haemophilus parasuis SH0165] gi|254808589|sp|B8F6D8|RNPH_HAEPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|219691667|gb|ACL32890.1| ribonuclease PH [Haemophilus parasuis SH0165] Length = 244 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALHDAINKL--IADGLLKENPMKGLVAAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA+ I L + Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQALN 237 >gi|305681138|ref|ZP_07403945.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC 14266] gi|305659343|gb|EFM48843.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC 14266] Length = 242 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R I +TR + GS L+++G+T ++ TA+ E+ VP + +++ GW+TA Sbjct: 6 RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ +DL+ LG I IDCDV+QA Sbjct: 66 EYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA++AL D + ++ + L +AA+S G++ G+ +DL Y E Sbjct: 126 DGGTRTASITGAYIALADAIAYL--TAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS DVD N +MT G VE+QG+AE TFS+D AML+ A+ +LI+ Q + Sbjct: 184 DSRADVDLNVIMTQEGKFVEIQGTAEHNTFSRDELNAMLDYAEKGCKELIEAQLASLGK 242 >gi|323527036|ref|YP_004229189.1| ribonuclease PH [Burkholderia sp. CCGE1001] gi|323384038|gb|ADX56129.1| ribonuclease PH [Burkholderia sp. CCGE1001] Length = 246 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 127/238 (53%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E VP ++R+ GW+TA Sbjct: 7 RPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALRSV DL LG+R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + S + VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLLAAGRI--ESSPISDFVAAISVGVYDGVPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VE+QG+AE FS+D A+L+LA IA L QK + Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASSGIATLTAKQKAALE 242 >gi|161582033|ref|NP_229867.2| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961] gi|254851339|ref|ZP_05240689.1| ribonuclease PH [Vibrio cholerae MO10] gi|255744021|ref|ZP_05417975.1| ribonuclease PH [Vibrio cholera CIRS 101] gi|262153620|ref|ZP_06028747.1| ribonuclease PH [Vibrio cholerae INDRE 91/1] gi|21759419|sp|Q9KVD6|RNPH_VIBCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254847044|gb|EET25458.1| ribonuclease PH [Vibrio cholerae MO10] gi|255738286|gb|EET93677.1| ribonuclease PH [Vibrio cholera CIRS 101] gi|262030561|gb|EEY49198.1| ribonuclease PH [Vibrio cholerae INDRE 91/1] gi|327483090|gb|AEA77497.1| Ribonuclease PH [Vibrio cholerae LMA3894-4] Length = 238 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238 >gi|148264306|ref|YP_001231012.1| ribonuclease PH [Geobacter uraniireducens Rf4] gi|189043764|sp|A5G3S1|RNPH_GEOUR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|146397806|gb|ABQ26439.1| RNAse PH [Geobacter uraniireducens Rf4] Length = 238 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 119/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +RE+ +TR K+AEGS L++FGDT ++ TA++E VP ++R GW+T Sbjct: 1 MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASVEGSVPPFLRGKGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GGR+ EIQR+IGR+LR+V+D++ LG R ++IDCDVIQ Sbjct: 61 AEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL+D L + + LK VAA+S G++ G P++DL+Y Sbjct: 121 ADGGTRTASITGAYVALYDALDGLVKKGELAAM--PLKEAVAAVSVGIVDGTPLLDLNYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ +VD NFVMT S VEVQG+AE F+ + AM +LA I L ++QK+ + Sbjct: 179 EDSSAEVDMNFVMTSSNRFVEVQGTAEAEPFTVEQMDAMRDLAISGIKRLFQIQKEAL 236 >gi|301382581|ref|ZP_07230999.1| ribonuclease PH [Pseudomonas syringae pv. tomato Max13] gi|302063052|ref|ZP_07254593.1| ribonuclease PH [Pseudomonas syringae pv. tomato K40] gi|302133600|ref|ZP_07259590.1| ribonuclease PH [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 240 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAASVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + AML LA+ + +L ++Q+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 240 >gi|262190382|ref|ZP_06048643.1| ribonuclease PH [Vibrio cholerae CT 5369-93] gi|262033743|gb|EEY52222.1| ribonuclease PH [Vibrio cholerae CT 5369-93] Length = 238 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLTVAKKGIADIVAVQKASLLD 238 >gi|261867317|ref|YP_003255239.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412649|gb|ACX82020.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1] Length = 238 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R I +TR +K+AEGS LV+FGDT +L TA++EE VP +++ GW+T Sbjct: 1 MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N LKG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALCDALNSL--VTNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGKPFSHEELLTLLDLAKQGCDMIFQTQRATLAE 238 >gi|183597211|ref|ZP_02958704.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827] gi|188023525|gb|EDU61565.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827] Length = 237 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +QMR I ++R +K+AEGS L++FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPEGRMADQMRPIKISRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GA VAL D L M + Q LK VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTAAISGACVALVDALNKMVEQGKLAQ--SPLKSMVAAVSVGIVDGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM D G ++EVQG+AE FS D ++L LAK + + + Q++ + Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHDELLSLLALAKTGLGSIFEAQREALK 237 >gi|319775856|ref|YP_004138344.1| ribonuclease PH [Haemophilus influenzae F3047] gi|329123701|ref|ZP_08252261.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] gi|317450447|emb|CBY86663.1| ribonuclease PH [Haemophilus influenzae F3047] gi|327469900|gb|EGF15365.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] Length = 238 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237 >gi|145635181|ref|ZP_01790886.1| ribonuclease PH [Haemophilus influenzae PittAA] gi|145267602|gb|EDK07601.1| ribonuclease PH [Haemophilus influenzae PittAA] Length = 238 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++V+ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREVLG 237 >gi|71066420|ref|YP_265147.1| ribonuclease PH [Psychrobacter arcticus 273-4] gi|123647900|sp|Q4FQJ5|RNPH_PSYA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|71039405|gb|AAZ19713.1| RNAse PH [Psychrobacter arcticus 273-4] Length = 238 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ NQ+R IS R +K+AEGS LV FGDT +L TA++E VP W++ GWIT Sbjct: 1 MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I +DCDV+Q Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA +AL D L+ ++ K + L G VAA+S GM G +DL+Y Sbjct: 121 ADGGTRTASVTGAAIALIDALESIQK--TKKLKADPLIGLVAAVSVGMKDGEAYLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED++ D D N VMT G +E+QG+AE F++ ML LA+ IA+LI +QK + Sbjct: 179 EDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLVLAEKGIAELIAMQKTALG 237 >gi|300714644|ref|YP_003739447.1| ribonuclease PH [Erwinia billingiae Eb661] gi|299060480|emb|CAX57587.1| Ribonuclease PH [Erwinia billingiae Eb661] Length = 238 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPAGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAALDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L H+ + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNHLVSIGKL--KTNPMKGMVAAISVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS D +L LA+ I LI QK + + Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLQLLALARGGIDSLILAQKAALKD 238 >gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium jeikeium K411] gi|68263167|emb|CAI36655.1| ribonuclease PH [Corynebacterium jeikeium K411] Length = 256 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 110/241 (45%), Positives = 161/241 (66%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TR + GS LV+FG+T ++ TA++EE VP + +++ GW+TA Sbjct: 18 RADGRATDELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R+ RE++ G+ GR+QEI R++GRALR+ VDL LG + IDCDV+QA Sbjct: 78 EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L ++ + Q L+ VAA+S G++ G P +DL Y E Sbjct: 138 DGGTRTAAITGAYVALADALAVLQ--ARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEE 195 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N MT G VE+QG+ E A F+++ +L+LA+ + +LI+ Q+ ++ E Sbjct: 196 DSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQE 255 Query: 242 V 242 + Sbjct: 256 L 256 >gi|70733342|ref|YP_263117.1| ribonuclease PH [Pseudomonas fluorescens Pf-5] gi|123652029|sp|Q4K3R6|RNPH_PSEF5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|68347641|gb|AAY95247.1| ribonuclease PH [Pseudomonas fluorescens Pf-5] Length = 240 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQQGMNEIFQLQQAALAD 240 >gi|88861108|ref|ZP_01135742.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata D2] gi|88816830|gb|EAR26651.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata D2] Length = 237 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GWIT Sbjct: 1 MRPSERTLNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHTRCDREAARGKQSGRTMEIQRLIARSLRAAVDLKALGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L HM + + LK +AAIS G+ G PI DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINTNPLKYMIAAISVGIYKGEPITDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N +MT++G ++EVQG+AE FS + +L LAK I ++I +QK ++ Sbjct: 179 EDSAAETDMNVIMTETGKLIEVQGTAEAEPFSFEELDQLLTLAKHSIREIIDIQKQTLA 237 >gi|134295025|ref|YP_001118760.1| ribonuclease PH [Burkholderia vietnamiensis G4] gi|166228274|sp|A4JCC2|RNPH_BURVG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|134138182|gb|ABO53925.1| RNAse PH [Burkholderia vietnamiensis G4] Length = 246 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 130/238 (54%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTINIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ARSPITDHVAAISVGVYEGAPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGRLVQLQKDVLG 242 >gi|315635018|ref|ZP_07890299.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476280|gb|EFU67031.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] Length = 238 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNQRANHQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEDGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N LKG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALCDALNGL--VANGTLSKNPLKGLVAAISVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCEVIFQTQRAALAE 238 >gi|117617491|ref|YP_858647.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558898|gb|ABK35846.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 257 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R Q+R +++TR +K+AEGS LV+FG+T +L TA+++ VP +++ GW+TA Sbjct: 22 RPSDRTAAQLRPVTITRHFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTA 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST +R+ REA SG+Q GR+ EI R+I R+LR+ VDL+ALG I +DCDV+QA Sbjct: 82 EYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 141 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA VAL D L M + LK +AA+S GM G I DL+Y E Sbjct: 142 DGGTRTAAITGACVALVDALNWMVE--KGMLKQSPLKQMIAAVSVGMYQGEAICDLEYIE 199 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N VMT+ G I+EVQG+AE F+ + ML LAK IAD+I LQK ++ Sbjct: 200 DSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQSLA 257 >gi|16272231|ref|NP_438442.1| ribonuclease PH [Haemophilus influenzae Rd KW20] gi|68248879|ref|YP_247991.1| ribonuclease PH [Haemophilus influenzae 86-028NP] gi|229844976|ref|ZP_04465113.1| ribonuclease PH [Haemophilus influenzae 6P18H1] gi|260580844|ref|ZP_05848669.1| ribonuclease PH [Haemophilus influenzae RdAW] gi|319896608|ref|YP_004134801.1| ribonuclease ph [Haemophilus influenzae F3031] gi|1173102|sp|P44444|RNPH_HAEIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|81336705|sp|Q4QNR6|RNPH_HAEI8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|1573239|gb|AAC21939.1| ribonuclease PH (rph) [Haemophilus influenzae Rd KW20] gi|68057078|gb|AAX87331.1| ribonuclease PH [Haemophilus influenzae 86-028NP] gi|229812110|gb|EEP47802.1| ribonuclease PH [Haemophilus influenzae 6P18H1] gi|260092467|gb|EEW76405.1| ribonuclease PH [Haemophilus influenzae RdAW] gi|317432110|emb|CBY80461.1| ribonuclease PH [Haemophilus influenzae F3031] Length = 238 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237 >gi|93006978|ref|YP_581415.1| ribonuclease PH [Psychrobacter cryohalolentis K5] gi|122414849|sp|Q1Q8S2|RNPH_PSYCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|92394656|gb|ABE75931.1| RNAse PH [Psychrobacter cryohalolentis K5] Length = 238 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ NQ+R IS R +K+AEGS LV FGDT +L TA++E VP W++ GWIT Sbjct: 1 MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I +DCDV+Q Sbjct: 61 AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA +AL D L+ ++ K + L G VAA+S GM G +DL+Y Sbjct: 121 ADGGTRTASVTGAAIALIDALESIQK--TKKLKADPLIGLVAAVSVGMKDGKAYLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED++ D D N VMT G +E+QG+AE F++ ML LA+ IA+LI +QK + Sbjct: 179 EDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLILAEKGIAELIAMQKTALG 237 >gi|28896951|ref|NP_796556.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633] gi|260365861|ref|ZP_05778355.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030] gi|260877852|ref|ZP_05890207.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034] gi|260895499|ref|ZP_05903995.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466] gi|33301645|sp|Q87T93|RNPH_VIBPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|28805159|dbj|BAC58440.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633] gi|308088601|gb|EFO38296.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466] gi|308089812|gb|EFO39507.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034] gi|308113474|gb|EFO51014.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030] Length = 238 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDEVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238 >gi|86146528|ref|ZP_01064850.1| ribonuclease PH [Vibrio sp. MED222] gi|218708240|ref|YP_002415861.1| ribonuclease PH [Vibrio splendidus LGP32] gi|254808602|sp|B7VHJ7|RNPH_VIBSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|85835585|gb|EAQ53721.1| ribonuclease PH [Vibrio sp. MED222] gi|218321259|emb|CAV17209.1| Ribonuclease PH [Vibrio splendidus LGP32] Length = 238 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 118/240 (49%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+VVDL +G I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D + + + +KGHVAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAINSLLASGKLKK--NPMKGHVAAVSVGIVGAQALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L LA IAD+++ QK +++ Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGIADIVEAQKAALAD 238 >gi|109900580|ref|YP_663835.1| ribonuclease PH [Pseudoalteromonas atlantica T6c] gi|123063997|sp|Q15MV7|RNPH_PSEA6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|109702861|gb|ABG42781.1| RNAse PH [Pseudoalteromonas atlantica T6c] Length = 237 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R +++TR + +AEGS L++FG+T +L A++ E VP +++ GW+ Sbjct: 1 MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ +DL LG I++DCDVIQ Sbjct: 61 AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M S + +K +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALTWMR--SKGIIKTNPMKHMIAAISVGIYKGNAIADLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMTD+G ++EVQG+AE FS + ML LAK I +L QK ++ Sbjct: 179 EDSEAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQKAALN 237 >gi|21221351|ref|NP_627130.1| ribonuclease PH [Streptomyces coelicolor A3(2)] gi|256787469|ref|ZP_05525900.1| ribonuclease PH [Streptomyces lividans TK24] gi|289771366|ref|ZP_06530744.1| ribonuclease PH [Streptomyces lividans TK24] gi|21759422|sp|Q9S2H7|RNPH_STRCO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|5531353|emb|CAB50985.1| putative ribonuclease PH [Streptomyces coelicolor A3(2)] gi|289701565|gb|EFD68994.1| ribonuclease PH [Streptomyces lividans TK24] Length = 245 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 113/237 (47%), Positives = 155/237 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT +L A++ E VP W + + GW+TA Sbjct: 3 RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIVDGTPLLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D D N V T G VEVQG+AE F++D +L+LA +L +LQ+ + Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNTLLDLATAGCTELAELQRKAL 239 >gi|23501084|ref|NP_697211.1| ribonuclease PH [Brucella suis 1330] gi|38258602|sp|Q8G2Y5|RNPH_BRUSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|23346953|gb|AAN29126.1| ribonuclease PH [Brucella suis 1330] Length = 238 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 151/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR IS R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T Sbjct: 1 MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R++REA +G+QGGR+QEIQR IGR+LR+VVD+ ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRFIGRSLRAVVDMQALGEMQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG WVALH+CL+ ME ++ +VLK HVAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFVMT G IVE+QG+AE FS++ F A++ LA+ I L+ LQK ++ Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238 >gi|91204195|emb|CAJ71848.1| strongly similar to ribonuclease PH [Candidatus Kuenenia stuttgartiensis] Length = 238 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 113/240 (47%), Positives = 160/240 (66%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ +++R +++TR +KY+ GS LV+ G+T ++ TA++EE VP I+NT GWIT Sbjct: 1 MRVDNRKYDELRPVTITRNFTKYSAGSVLVESGNTKVICTASIEEYVPPHIKNTGTGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LP +T +RV RE+ G+ GR+ EIQR+IGR+LR++ DL+ L R I IDCDVIQ Sbjct: 61 AEYSLLPGATPSRVPRESTKGKISGRTHEIQRLIGRSLRAICDLTLLKERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+++AL D +Q + D L VAAIS G++ ++DL Y Sbjct: 121 ADGGTRTAAITGSYIALADAVQWLLD--KNVIKENPLINSVAAISAGIVNNIALLDLCYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED++ VD NFVMT SG +EVQG+ E F +D ML LA I ++ ++QK + Sbjct: 179 EDASAQVDMNFVMTGSGKYIEVQGTGEEYAFDEDQLAKMLTLAHKGICEITEIQKKALGT 238 >gi|206561359|ref|YP_002232124.1| ribonuclease PH [Burkholderia cenocepacia J2315] gi|226736893|sp|B4EBP8|RNPH_BURCJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|198037401|emb|CAR53336.1| ribonuclease PH [Burkholderia cenocepacia J2315] Length = 246 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 131/238 (55%), Positives = 172/238 (72%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT +L TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLIAAGKL--TRSPITDHVAAISVGVYEGAPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ IA+L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVLG 242 >gi|254226345|ref|ZP_04919935.1| ribonuclease PH [Vibrio cholerae V51] gi|125621150|gb|EAZ49494.1| ribonuclease PH [Vibrio cholerae V51] Length = 257 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRQDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257 >gi|294629581|ref|ZP_06708141.1| ribonuclease PH [Streptomyces sp. e14] gi|292832914|gb|EFF91263.1| ribonuclease PH [Streptomyces sp. e14] Length = 241 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 156/239 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAFVALADAVAWAQGKKLIKTGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D D N V T G VEVQG+AE F++D A+L+LA DL +Q+ + Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCTDLAAIQRAALEK 241 >gi|225021578|ref|ZP_03710770.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii ATCC 33806] gi|224945569|gb|EEG26778.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii ATCC 33806] Length = 242 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R I +TR + GS L+++G+T ++ TA+ E+ VP + +++ GW+TA Sbjct: 6 RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ +DL+ LG I IDCDV+QA Sbjct: 66 EYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA++AL D + H+ + L +AA+S G++ G+ +DL Y E Sbjct: 126 DGGTRTASITGAYIALADAIAHL--TAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS DVD N +MT G VE+QG+AE TFS++ AML+ A+ +LI+ Q + Sbjct: 184 DSRADVDLNVIMTQEGKFVEIQGTAEHNTFSREELNAMLDYAEKGCKELIEAQLASLGK 242 >gi|52424307|ref|YP_087444.1| ribonuclease PH [Mannheimia succiniciproducens MBEL55E] gi|61215869|sp|Q65W01|RNPH_MANSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|52306359|gb|AAU36859.1| Rph protein [Mannheimia succiniciproducens MBEL55E] Length = 240 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R N+ R I +TR +K+AEGS LV+FGDT ++ TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRAVNEPRPIKITRHYTKHAEGSVLVEFGDTKVICTATVEDSVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR++VDL+ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMLREAAKGKQGGRTMEIQRLIARSLRAMVDLTALGERSITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N + LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALTDAINALVE--NGTLKTSPLKGLVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +LNLAK + Q+ ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCNMIFDAQRRALA 237 >gi|300024890|ref|YP_003757501.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888] gi|299526711|gb|ADJ25180.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888] Length = 237 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 138/235 (58%), Positives = 179/235 (76%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +++R +S+ R VSK+AEGSCL+KFGDTH+L TA+LEE++P W++ GW+T Sbjct: 1 MRPSKRKPDELRRVSIERAVSKHAEGSCLIKFGDTHVLCTASLEERLPQWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG GR+QEIQR++GRALR+VVDL LG RQI +DCDVIQ Sbjct: 61 AEYSMLPRATHERTRREVTSGHPSGRTQEIQRLVGRALRAVVDLPKLGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC+Q M+ VL+ HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCIQWMK--MRDMVKDGVLRDHVAAVSCGIYKGDPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS D D+NFVMT +G IVE+QG+AE F+++ F +L LAK I +L++LQK Sbjct: 179 EDSNADADSNFVMTGTGGIVEIQGTAETTPFTEERFGDLLTLAKKGIGELVQLQK 233 >gi|293390938|ref|ZP_06635272.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951472|gb|EFE01591.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1] Length = 238 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R I +TR +K+AEGS LV+FGDT +L TA++EE VP +++ GW+T Sbjct: 1 MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N LKG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALCDALNSL--VTNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + + Q+ ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDMIFQTQRATLAE 238 >gi|158425913|ref|YP_001527205.1| ribonuclease PH [Azorhizobium caulinodans ORS 571] gi|172047841|sp|A8HV93|RNPH_AZOC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|158332802|dbj|BAF90287.1| ribonuclease PH [Azorhizobium caulinodans ORS 571] Length = 238 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 141/239 (58%), Positives = 178/239 (74%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R V ++AEGSCLVKFGDTH+L ATLEE++P W++ GW+T Sbjct: 1 MRPSRRANDEMRAVSFERGVLRHAEGSCLVKFGDTHVLVAATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA +G+Q GR+QEIQR+IGR+LRSV DL LG RQI +DCDV+Q Sbjct: 61 AEYSMLPRATLERTRREATTGKQSGRTQEIQRLIGRSLRSVTDLVGLGERQITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVALHDCL M S + LK +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALHDCLNWMYQRS--MLKTIPLKENVAAISCGIHEGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT +G IVE+QG+AE+ FSQD ++L LA+ + +L++LQK I Sbjct: 179 EDSKAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLSLLALARKGVGELVELQKQAIK 237 >gi|319789115|ref|YP_004150748.1| ribonuclease PH [Thermovibrio ammonificans HB-1] gi|317113617|gb|ADU96107.1| ribonuclease PH [Thermovibrio ammonificans HB-1] Length = 234 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 126/239 (52%), Positives = 167/239 (69%), Gaps = 7/239 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+RE+ +T K+AEGSCL++FGDT ++ TA++EEKVP ++R T GWIT Sbjct: 2 IRSDGRAPDQLREVKITLDYIKHAEGSCLIEFGDTKVICTASVEEKVPPFLRGTGQGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R+ REA G+ GR+QEIQR+IGR+LRS VDL+ALG I IDCDVIQ Sbjct: 62 AEYAMLPRATAQRMVREAARGKLTGRTQEIQRLIGRSLRSAVDLTALGEVTIWIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL+ L+ ME ++ +AA+S G++ G ++DL+Y Sbjct: 122 ADGGTRTASITGAFVALYRALEKMEKLEA-------VRSFLAAVSVGIVDGTVLLDLNYE 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VM + G EVQGSAE F++D MLNLA I +LI QK+V+ Sbjct: 175 EDSMAEVDMNVVMNEKGEFAEVQGSAEGRPFTRDELDRMLNLASKGIMELISKQKEVLK 233 >gi|145632517|ref|ZP_01788251.1| ribonuclease PH [Haemophilus influenzae 3655] gi|144986712|gb|EDJ93264.1| ribonuclease PH [Haemophilus influenzae 3655] Length = 238 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIENGTLKI--NPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237 >gi|156972970|ref|YP_001443877.1| ribonuclease PH [Vibrio harveyi ATCC BAA-1116] gi|269959372|ref|ZP_06173755.1| ribonuclease PH [Vibrio harveyi 1DA3] gi|156524564|gb|ABU69650.1| hypothetical protein VIBHAR_00648 [Vibrio harveyi ATCC BAA-1116] gi|269835809|gb|EEZ89885.1| ribonuclease PH [Vibrio harveyi 1DA3] Length = 240 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 63 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDDVLCDLEYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 240 >gi|300311449|ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1] gi|124483528|emb|CAM32637.1| tRNA nucleotidyltransferase (ribonuclease PH) protein [Herbaspirillum seropedicae] gi|300074234|gb|ADJ63633.1| tRNA nucleotidyltransferase (ribonuclease PH) protein [Herbaspirillum seropedicae SmR1] Length = 242 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 131/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR Q+RE+ LTR+ +K+AEGS LV+FGDT +L TA++EEKVP +++ GW+TA Sbjct: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ DL A G R + +DCDV+QA Sbjct: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA VA +D ++ S + +K VAAIS G+ G P++DLDY E Sbjct: 126 DGGTRTAAITGAMVAAYDAFAGLK--SQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMTD+GH VEVQG+AE A F + A+L+LA+ IA L LQ+ + Sbjct: 184 DSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALG 241 >gi|312963858|ref|ZP_07778329.1| ribonuclease PH [Pseudomonas fluorescens WH6] gi|311281893|gb|EFQ60503.1| ribonuclease PH [Pseudomonas fluorescens WH6] Length = 240 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F AML LA+ + ++ LQ +++ Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQKGMTEIFALQNAALAD 240 >gi|46015433|pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Pseudomonas Aeruginosa Length = 239 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYG LPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA Sbjct: 63 EYGXLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ LK VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGATVALIDALAVLKKRGAL--KGNPLKQXVAAVSVGIYQGVPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N V TD+G +EVQG+AE A F A L LA+ +L +LQ+ ++ Sbjct: 181 DSAAETDLNVVXTDAGGFIEVQGTAEGAPFRPAELNAXLELAQQGXQELFELQRAALAE 239 >gi|254389819|ref|ZP_05005043.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064] gi|197703530|gb|EDY49342.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064] Length = 246 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 118/241 (48%), Positives = 154/241 (63%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+T Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L VAA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D D N V T G VEVQG+AE F + A+L+LA ADL LQ D ++ Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAALQNDALART 242 Query: 242 V 242 V Sbjct: 243 V 243 >gi|262163750|ref|ZP_06031490.1| ribonuclease PH [Vibrio mimicus VM223] gi|262027730|gb|EEY46395.1| ribonuclease PH [Vibrio mimicus VM223] Length = 238 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGDPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238 >gi|323137091|ref|ZP_08072171.1| ribonuclease PH [Methylocystis sp. ATCC 49242] gi|322397852|gb|EFY00374.1| ribonuclease PH [Methylocystis sp. ATCC 49242] Length = 238 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 134/240 (55%), Positives = 178/240 (74%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R V++YAEGSCLVKFG+TH+L A+LE+K P W+R GW+T Sbjct: 1 MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ +G+ GR+QEIQR+IGR+LR+V +L A+G RQI+IDCDVIQ Sbjct: 61 AEYSMLPRATHTRTRRESSAGKLTGRTQEIQRLIGRSLRAVTNLPAMGERQIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+AL DC + M S L+ HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWLALRDCFEWMR--SRSIIKDNPLRDHVAAVSCGIFNGTPVIDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST + DANFV+T SG +VE+Q +AE A FS D ++L LA+ +ADL+ LQK +++ Sbjct: 179 EDSTAETDANFVITGSGGLVEIQATAEVAVFSPDELTSLLTLAQGGVADLVALQKAALAS 238 >gi|227115107|ref|ZP_03828763.1| ribonuclease PH [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 238 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNSREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M + +KG +AA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNQMVAKGKLKK--NPMKGMIAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VMT+ G ++EVQG+AE FS D +L LA+ I +++ QK + Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLTLLALARGGIDTIVQAQKAAL 236 >gi|170719366|ref|YP_001747054.1| ribonuclease PH [Pseudomonas putida W619] gi|226736926|sp|B1J4L4|RNPH_PSEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|169757369|gb|ACA70685.1| ribonuclease PH [Pseudomonas putida W619] Length = 240 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDALAVIKKRG-GLKAGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQVALAD 240 >gi|153835514|ref|ZP_01988181.1| ribonuclease PH [Vibrio harveyi HY01] gi|148867911|gb|EDL67124.1| ribonuclease PH [Vibrio harveyi HY01] Length = 238 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK ++N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238 >gi|26991970|ref|NP_747395.1| ribonuclease PH [Pseudomonas putida KT2440] gi|148550402|ref|YP_001270504.1| ribonuclease PH [Pseudomonas putida F1] gi|61216052|sp|Q88C89|RNPH_PSEPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228303|sp|A5WB10|RNPH_PSEP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|24987100|gb|AAN70859.1|AE016730_5 ribonuclease PH [Pseudomonas putida KT2440] gi|148514460|gb|ABQ81320.1| RNAse PH [Pseudomonas putida F1] Length = 240 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ + LK +AA+S GM G ++DLDY E Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F + F AML LA+ + ++ +LQ+ +++ Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240 >gi|84386442|ref|ZP_00989470.1| ribonuclease PH [Vibrio splendidus 12B01] gi|84378866|gb|EAP95721.1| ribonuclease PH [Vibrio splendidus 12B01] Length = 238 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 117/240 (48%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA SG+QGGR+ EIQR+I R+LR+VVDL +G I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D + + + +KGHVAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAINSLLASGKLKK--NPMKGHVAAVSVGIVGAQALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L LA I D+++ QK +++ Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGITDIVEAQKAALAD 238 >gi|301168926|emb|CBW28521.1| ribonuclease PH (pseudogene) [Haemophilus influenzae 10810] Length = 238 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q+ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKALG 237 >gi|254385745|ref|ZP_05001066.1| ribonuclease PH [Streptomyces sp. Mg1] gi|194344611|gb|EDX25577.1| ribonuclease PH [Streptomyces sp. Mg1] Length = 244 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 114/237 (48%), Positives = 152/237 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA+ E VP W + + GW+T+ Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWGQRKKLIKAGRKPLTGTVAAVSVGIVDGEPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V T G VEVQG+AE F + A+L+LA ADL LQ + Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADLQALQLGAL 239 >gi|84684654|ref|ZP_01012555.1| ribonuclease PH [Maritimibacter alkaliphilus HTCC2654] gi|84667633|gb|EAQ14102.1| ribonuclease PH [Rhodobacterales bacterium HTCC2654] Length = 250 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 133/239 (55%), Positives = 176/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +++R IS+ V+K+AEGSCL+K GDTH+L TA+LEE+VP W+RNT GW+T Sbjct: 14 MRPSGRNVDELRPISIETGVTKHAEGSCLIKVGDTHVLCTASLEERVPPWLRNTGMGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 74 AEYGMLPRSTSSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRQALGERQITVDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + S L VAA+SCG+ G P++DLDY Sbjct: 134 ADGGTRCASITGGWVALRLAVQKLMKAGDIV--SDPLIDPVAAVSCGIYAGQPVLDLDYP 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NFVMT +G ++EVQ SAE +TFS+ ++ LA+ +A+L+ QK ++ Sbjct: 192 EDSEAGVDGNFVMTGTGRLIEVQMSAEGSTFSRAQMDDLMGLAEKGVAELVAAQKAAVA 250 >gi|239831019|ref|ZP_04679348.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301] gi|239823286|gb|EEQ94854.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301] Length = 238 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 148/239 (61%), Positives = 190/239 (79%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R +SK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T Sbjct: 1 MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG WVALH+CL+ ME ++ +VLK H+AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHIAAISCGIYEGEPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFVMT G IVE+QG+AE A FS++ F +++ LA+ I L+ LQK ++ Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFASLMKLARGGIDRLVSLQKMAVA 238 >gi|163783654|ref|ZP_02178642.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1] gi|159881059|gb|EDP74575.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1] Length = 255 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 113/236 (47%), Positives = 160/236 (67%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E+++R + + R + EGSCL++FGDT ++ TA++ E VP +++ GWIT Sbjct: 1 MRKDGRREDELRPVKIVRDFLSHPEGSCLIEFGDTKVICTASVTESVPPFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GR+ EIQRMIGRA+R+ VDL+ LG R + +DCDVIQ Sbjct: 61 AEYSMLPRATHTRNIRESVQGKISGRTHEIQRMIGRAMRTAVDLTKLGERTLWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ D L + + + S +K VAA+S G++ G P++DL++ Sbjct: 121 ADGGTRTASITGAFVAVADALIKLYE--DGIIQSVPIKDFVAAVSVGIVNGKPLLDLNFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD N V T G EVQ E TFS+D +L+LA I++L++LQ+ Sbjct: 179 EDSMAQVDMNVVGTGEGRFSEVQSMGEEYTFSRDELDNLLDLALKGISELVELQRA 234 >gi|294812846|ref|ZP_06771489.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064] gi|326441376|ref|ZP_08216110.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064] gi|294325445|gb|EFG07088.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064] Length = 248 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 118/241 (48%), Positives = 154/241 (63%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA++ E VP W + + GW+T Sbjct: 5 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG I++DCDV+QA Sbjct: 65 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L VAA+S G++ G P++DL Y E Sbjct: 125 DGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D D N V T G VEVQG+AE F + A+L+LA ADL LQ D ++ Sbjct: 185 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAALQNDALART 244 Query: 242 V 242 V Sbjct: 245 V 245 >gi|153007527|ref|YP_001368742.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188] gi|166228300|sp|A6WVA9|RNPH_OCHA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|151559415|gb|ABS12913.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188] Length = 238 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 148/239 (61%), Positives = 189/239 (79%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R +SK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT GW+T Sbjct: 1 MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG QI +DCDVIQ Sbjct: 61 AEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG WVALH+CL+ ME ++ +VLK H+AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHIAAISCGIYEGEPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFVMT G IVE+QG+AE A FS++ F ++ LA+ I L+ LQK ++ Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFANLMKLARGGIDRLVSLQKMAVA 238 >gi|260582842|ref|ZP_05850627.1| ribonuclease PH [Haemophilus influenzae NT127] gi|260094055|gb|EEW77958.1| ribonuclease PH [Haemophilus influenzae NT127] Length = 238 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLILLDLAKQGCNQIFIAQREALG 237 >gi|260906180|ref|ZP_05914502.1| ribonuclease PH [Brevibacterium linens BL2] Length = 240 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 117/240 (48%), Positives = 160/240 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +++RE+++TR AEGS LV+FG+T +L A+L VP W++ GW+T Sbjct: 1 MRADGRNADELREVTITRNWINTAEGSALVEFGNTRVLVAASLTAGVPRWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR+LR+V+DL LG +++DCDV+Q Sbjct: 61 AEYAMLPRATDSRNTRESVKGKLGGRTHEISRLIGRSLRAVIDLDKLGENTLVLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + +K +AAIS G++ G P++DL Y Sbjct: 121 ADGGTRTASITGAYVALADAIDKGRSTGIIPAANNPIKDSIAAISVGIIDGEPVLDLPYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT SG VEVQG+AE A F +D +L+LA ADL +Q +V+S Sbjct: 181 EDSRADTDMNVVMTGSGQFVEVQGTAEGAPFDRDELGTLLDLAAKGCADLTGIQSEVLSK 240 >gi|83648974|ref|YP_437409.1| ribonuclease PH [Hahella chejuensis KCTC 2396] gi|123530517|sp|Q2S8P0|RNPH_HAHCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|83637017|gb|ABC32984.1| ribonuclease PH [Hahella chejuensis KCTC 2396] Length = 238 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q R+I +T+ +K+AEGS LV+FGDT ++ TAT+E VP ++R GW+T Sbjct: 1 MRPSGRQPDQTRDIKITKNYTKHAEGSVLVEFGDTKVICTATVENGVPRFLRGEDQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ VDL + I IDCDVIQ Sbjct: 61 AEYGMLPRATGTRNQREAARGKQGGRTLEIQRLIGRSLRAAVDLKKMPDISITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VA+ D + + + + + VAAIS G+ G P+VDLDY Sbjct: 121 ADGGTRTASITGGFVAMADAINSL--LAKGQLKNNPILHKVAAISVGVYEGVPVVDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMTD +EVQG+AE A FS AML+LA I L Q++V+ + Sbjct: 179 EDSKAETDMNVVMTDQDGFIEVQGTAEAAPFSSAELTAMLDLAGKGIRQLFVAQEEVLQS 238 >gi|114705078|ref|ZP_01437986.1| ribonuclease PH [Fulvimarina pelagi HTCC2506] gi|114539863|gb|EAU42983.1| ribonuclease PH [Fulvimarina pelagi HTCC2506] Length = 240 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 139/240 (57%), Positives = 187/240 (77%), Gaps = 1/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MRE+SLT V+++AEGSCLVKFG+T +L TA+LEE++P W++N+ GW+T Sbjct: 1 MRPSKRPADSMREVSLTTGVNRHAEGSCLVKFGETQVLCTASLEERIPPWLKNSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R++REA +G+QGGR+ EIQR+IGR+LR+VVD+ ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATGDRMRREASAGKQGGRTVEIQRLIGRSLRAVVDMGALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL +CL+ ME + Q VLKGHVAA+SCG+ P++DLDY Sbjct: 121 ADGGTRTASITGGYVALAECLKWME-ARSMCQRKNVLKGHVAAVSCGIYKNEPVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + DANFVMT +G IVE+QG+AE FS++ F ++ LAK I +L++ Q + + Sbjct: 180 EDSVAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTKLMALAKKGIGELVEAQTAALGD 239 >gi|262404946|ref|ZP_06081498.1| ribonuclease PH [Vibrio sp. RC586] gi|262348785|gb|EEY97926.1| ribonuclease PH [Vibrio sp. RC586] Length = 238 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+ I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKK--NPMKGHVAAVSVGILGENVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238 >gi|329896532|ref|ZP_08271590.1| Ribonuclease PH [gamma proteobacterium IMCC3088] gi|328921749|gb|EGG29122.1| Ribonuclease PH [gamma proteobacterium IMCC3088] Length = 240 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 125/239 (52%), Positives = 170/239 (71%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +++REI+++R + +AEGS LV+FG T +L A++ E VP ++R + GWITA Sbjct: 3 RPSGRQPHELREITISRNYTCHAEGSVLVEFGRTKVLCNASVSEGVPRFLRGSGQGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+VVDL LG I +DCDVIQA Sbjct: 63 EYGMLPRSTGSRMDREAARGKQGGRTLEIQRLIGRSLRAVVDLKRLGEYTITVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L ++ +K + L VA++S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGACVALVDALNGLQR--DKALKTDPLNQLVASVSVGVYQGVPVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS+ D D N VM + G ++EVQG+AE ATF + ML+LA+ I DL + Q+ ++ Sbjct: 181 DSSADTDMNVVMGEDGGLIEVQGTAEGATFDRATLNQMLDLAEAGIRDLFEAQRKALAQ 239 >gi|145631050|ref|ZP_01786825.1| ribonuclease PH [Haemophilus influenzae R3021] gi|144983335|gb|EDJ90817.1| ribonuclease PH [Haemophilus influenzae R3021] Length = 238 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q+ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKALG 237 >gi|83313597|ref|YP_423861.1| ribonuclease PH [Magnetospirillum magneticum AMB-1] gi|82948438|dbj|BAE53302.1| RNase PH [Magnetospirillum magneticum AMB-1] Length = 241 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 135/239 (56%), Positives = 171/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + L VS++AEGSC+ KFGDTH+L TA++EEKVP ++RNT GW+T Sbjct: 3 MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+ EIQR+IGR+LRSV DL+A+G RQI IDCDV+Q Sbjct: 63 AEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLAAMGERQIKIDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALH Q + + L HVAAISCG+ G ++DLDY Sbjct: 123 ADGGTRTASITGAFVALHLAFQRLVRLE--LLKAIPLTDHVAAISCGIYEGVAVLDLDYP 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT +G IVE+QG+AE FS+ F + +LA+ I L++ QK + Sbjct: 181 EDSNAQADANFVMTGTGGIVEIQGTAEERPFSRTQFLELTDLAEAGIRQLVEAQKKALG 239 >gi|148827427|ref|YP_001292180.1| ribonuclease PH [Haemophilus influenzae PittGG] gi|166228285|sp|A5UG91|RNPH_HAEIG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|148718669|gb|ABQ99796.1| ribonuclease PH [Haemophilus influenzae PittGG] Length = 238 Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIE--NGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q+ V+ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKVLG 237 >gi|118496994|ref|YP_898044.1| ribonuclease PH [Francisella tularensis subsp. novicida U112] gi|194324228|ref|ZP_03058002.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE] gi|166228281|sp|A0Q4X5|RNPH_FRATN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|118422900|gb|ABK89290.1| ribonuclease PH [Francisella novicida U112] gi|194321675|gb|EDX19159.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE] Length = 235 Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 162/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPEFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232 >gi|121728030|ref|ZP_01681069.1| ribonuclease PH [Vibrio cholerae V52] gi|121629733|gb|EAX62152.1| ribonuclease PH [Vibrio cholerae V52] gi|146315337|gb|ABQ19876.1| ribonuclease PH [Vibrio cholerae O395] gi|227012057|gb|ACP08267.1| ribonuclease PH [Vibrio cholerae O395] Length = 257 Score = 344 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 20 MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 140 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257 >gi|148359584|ref|YP_001250791.1| ribonuclease PH [Legionella pneumophila str. Corby] gi|296107626|ref|YP_003619327.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy] gi|166228288|sp|A5IDJ5|RNPH_LEGPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|148281357|gb|ABQ55445.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Legionella pneumophila str. Corby] gi|295649528|gb|ADG25375.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy] Length = 235 Score = 344 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 115/237 (48%), Positives = 165/237 (69%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R +++TR + YAEGS LV+FG T ++ A++ E VP +++ GWIT Sbjct: 1 MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASIVEGVPRFLKGKNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+IGR+LR+ +DL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+ VA+ D + M ++ + +VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGSCVAMRDAIHWMVQREKIKKM--PVFNYVAAVSVGIYRGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED + D N VM + GH +EVQG+AE +F+++ +ML+LA+ I LI++QK+ Sbjct: 179 EDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQKNA 235 >gi|312795401|ref|YP_004028323.1| ribonuclease PH [Burkholderia rhizoxinica HKI 454] gi|312167176|emb|CBW74179.1| Ribonuclease PH (EC 2.7.7.56) [Burkholderia rhizoxinica HKI 454] Length = 243 Score = 344 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 122/237 (51%), Positives = 165/237 (69%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R++ +TR +K+AEGS L++ GDT ++ TA++ EKVP ++R+ GW+TA Sbjct: 7 RPSGRAADALRDVCITRHYTKHAEGSVLIECGDTKVICTASVLEKVPEFLRDRGRGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL LG R + IDCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRALRAVFDLEKLGPRTLHIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGA++A HD + + ++ + + HVAA+S G+ P++DLDY E Sbjct: 127 DGGTRCASITGAFIAAHDAVDTL--LAHGKLTATPILDHVAAVSVGIHGATPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VMT +G VEVQG+AE FS+D A+L LA+ I LI+LQK + Sbjct: 185 DSHCDTDMNVVMTGAGRFVEVQGTAEGEPFSRDELNALLGLAESGITRLIELQKKAL 241 >gi|144897368|emb|CAM74232.1| RNase PH [Magnetospirillum gryphiswaldense MSR-1] Length = 241 Score = 344 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I L S++AEGSCL KFGDTH+L TA++EE+VP ++RNT GW+TA Sbjct: 4 RPSGRAFDQLRVIRLETGFSRHAEGSCLAKFGDTHVLCTASVEERVPPFLRNTGKGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+ EIQR+IGR+LR+V DL+A+G QI +DCDV+QA Sbjct: 64 EYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRAVTDLTAMGEMQIKLDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVALH Q + + + L VAAISCG+ G ++DLDY E Sbjct: 124 DGGTRTASITGAWVALHLAFQKLVEAGKLSAV--PLIDQVAAISCGIYEGQAVLDLDYPE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS+ DANFV+T +G IVEVQG+AE FS+D F +L LA+ + +L LQK + Sbjct: 182 DSSAQADANFVLTGTGGIVEVQGTAEERPFSRDQFTQLLELAEKGVTELALLQKKAVG 239 >gi|187931269|ref|YP_001891253.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147] gi|226736911|sp|B2SF43|RNPH_FRATM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|187712178|gb|ACD30475.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147] Length = 235 Score = 344 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 117/232 (50%), Positives = 162/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I IDCDVIQ Sbjct: 61 AEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232 >gi|254362020|ref|ZP_04978149.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213] gi|153093571|gb|EDN74545.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213] Length = 238 Score = 344 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ+REI +TR ++YAEGS L++FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL+D + + +N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VANGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G +VEVQG+AE FS +L+LAK I+ L++ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238 >gi|21759411|sp|Q9AES0|RNPH_PASHA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|13591380|gb|AAK29744.1| ribonuclease PH-like protein [Mannheimia haemolytica] Length = 238 Score = 344 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ+REI +TR ++YAEGS L++FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL+D + + +N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VANGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM G +VEVQG+AE FS +L+LAK I+ L++ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVQDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238 >gi|262273502|ref|ZP_06051316.1| ribonuclease PH [Grimontia hollisae CIP 101886] gi|262222480|gb|EEY73791.1| ribonuclease PH [Grimontia hollisae CIP 101886] Length = 238 Score = 344 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ Q+R +++TR + +AEGS LV FGDT ++ TA++EE VP +++ GWIT Sbjct: 1 MRPSGREVGQIRPVTITRHFTAHAEGSVLVAFGDTKVICTASVEEGVPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEKLGDFTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +KGHVAA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTASITGASVALADALNKLVSEGKL--KENPMKGHVAAVSVGIFEGTPICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VM + G ++EVQG+AE F+ + AML+LA I D++ +QK + Sbjct: 179 EDSAADTDMNVVMLEDGRMIEVQGTAEAEPFTAEELNAMLSLAAKGIQDIVAIQKASL 236 >gi|56476728|ref|YP_158317.1| ribonuclease PH [Aromatoleum aromaticum EbN1] gi|81598865|sp|Q5P5J6|RNPH_AZOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56312771|emb|CAI07416.1| Ribonuclease PH [Aromatoleum aromaticum EbN1] Length = 239 Score = 344 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 131/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R + +TR + +AEGS LV+FG T +L TA++E+ VP ++R GW+T Sbjct: 1 MRPSQRRPDQLRAVMITRNFTCHAEGSVLVEFGATRVLCTASVEDTVPPFLRGRGQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDLSALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VA+HD + + L+ VAA+S GM G P++DLDY Sbjct: 121 ADGGTRTAAITGACVAVHDAFRKLVTEGKL--PYSPLREFVAAVSVGMFQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D D N VMT +G VEVQG+AE ATFS+ A+L LA+ I L++ QK I Sbjct: 179 EDSGCDTDMNVVMTGAGGFVEVQGTAEGATFSRAELNALLELAESGIRRLVEAQKAAI 236 >gi|29831713|ref|NP_826347.1| ribonuclease PH [Streptomyces avermitilis MA-4680] gi|61216038|sp|Q82D17|RNPH_STRAW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|29608829|dbj|BAC72882.1| putative ribonuclease PH [Streptomyces avermitilis MA-4680] Length = 244 Score = 344 bits (884), Expect = 6e-93, Method: Composition-based stats. Identities = 113/238 (47%), Positives = 153/238 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R I++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D D N V T G VEVQG+AE F + A+L+LA +L +Q+ + Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVSGCDELAVIQRAALE 240 >gi|229593356|ref|YP_002875475.1| ribonuclease PH [Pseudomonas fluorescens SBW25] gi|259494125|sp|C3K479|RNPH_PSEFS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|229365222|emb|CAY53520.1| ribonuclease PH [Pseudomonas fluorescens SBW25] Length = 240 Score = 344 bits (884), Expect = 6e-93, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 163/239 (68%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALVDAL-KVIKKRGGLKAGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT +G +EVQG+AE A F AML LA+ + ++ +LQ +++ Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAALAD 240 >gi|115522381|ref|YP_779292.1| ribonuclease PH [Rhodopseudomonas palustris BisA53] gi|115516328|gb|ABJ04312.1| RNAse PH [Rhodopseudomonas palustris BisA53] Length = 243 Score = 344 bits (883), Expect = 6e-93, Method: Composition-based stats. Identities = 139/239 (58%), Positives = 182/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TA+LEE++P W++ GW+T Sbjct: 7 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTASLEERLPPWLKGQGRGWVT 66 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +RE+ +G+Q GR+ EIQR+IGR+LR+ VDL A+G RQI +DCDV+Q Sbjct: 67 AEYGMLPRATHERTRRESAAGKQSGRTVEIQRLIGRSLRASVDLEAMGERQITVDCDVLQ 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL DCL M+ + ++VL+ +VAAISCG+ G P++DLDY Sbjct: 127 ADGGTRTAAITGAWVALADCLAWMK--ARNMIKAKVLRDNVAAISCGIYNGTPVLDLDYA 184 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G I+EVQG+AE+ FSQD F A++ LA+ +A L+ LQ ++ Sbjct: 185 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQNMAVA 243 >gi|90421849|ref|YP_530219.1| ribonuclease PH [Rhodopseudomonas palustris BisB18] gi|122477603|sp|Q21CI6|RNPH_RHOPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|90103863|gb|ABD85900.1| RNAse PH [Rhodopseudomonas palustris BisB18] Length = 239 Score = 344 bits (883), Expect = 6e-93, Method: Composition-based stats. Identities = 142/239 (59%), Positives = 182/239 (76%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSC+VKFGDTH+L TATLE+++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRATVDLQALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC+ M+ + + VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCIGWMKTRNMFKGTAPVLRDNVAAISCGIYNGTPVLDLDYA 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFVMT G I+EVQG+AE+ FSQD F A++ LAK +A L+ LQK ++ Sbjct: 181 EDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAKKGVARLVDLQKMAVA 239 >gi|21232680|ref|NP_638597.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767292|ref|YP_242054.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004] gi|188990329|ref|YP_001902339.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. B100] gi|24638173|sp|Q8P5T5|RNPH_XANCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|81306727|sp|Q4UY39|RNPH_XANC8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736950|sp|B0RP96|RNPH_XANCB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|21114489|gb|AAM42521.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572624|gb|AAY48034.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004] gi|167732089|emb|CAP50281.1| ribonuclease PH [Xanthomonas campestris pv. campestris] Length = 241 Score = 344 bits (883), Expect = 6e-93, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L +LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGVGELFELQRAALAG 241 >gi|302560437|ref|ZP_07312779.1| ribonuclease PH [Streptomyces griseoflavus Tu4000] gi|302478055|gb|EFL41148.1| ribonuclease PH [Streptomyces griseoflavus Tu4000] Length = 245 Score = 344 bits (883), Expect = 6e-93, Method: Composition-based stats. Identities = 118/237 (49%), Positives = 159/237 (67%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D +Q +D + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVQWAQDKKLVRAGRRPLTGTVSAVSVGIVGGVPLLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D D N V T G VEVQG+AE F++D A+L+LA A+L Q+ + Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVTGCAELAAAQRKAL 239 >gi|121534591|ref|ZP_01666413.1| ribonuclease PH [Thermosinus carboxydivorans Nor1] gi|121306843|gb|EAX47763.1| ribonuclease PH [Thermosinus carboxydivorans Nor1] Length = 246 Score = 344 bits (883), Expect = 6e-93, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 162/240 (67%), Gaps = 3/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GRQ +R IS+TR K+AEGS ++ GDT ++ ATLE+KVP +++ T GWIT Sbjct: 1 MRIDGRQAADLRPISITRHYLKHAEGSVFIEVGDTKVICAATLEDKVPPFLKGTGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST R REA GR GR+ EIQR+IGRALRSVVDL ALG R I IDCDVIQ Sbjct: 61 AEYSLLPRSTQTRNIREAAKGRLTGRTHEIQRLIGRALRSVVDLKALGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + K +K +AA+S G++ G ++DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAVNTIYTDPEK---PFPVKDFLAAVSVGVVDGAAVLDLCYA 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT +G +VEVQG+ E+ F++ ML L + IA+LI QK+V+ Sbjct: 178 EDSAAVVDMNIVMTGNGDLVEVQGTGEKHPFTKAQLAEMLALGERGIAELIDYQKEVLGE 237 >gi|241667227|ref|ZP_04754805.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875778|ref|ZP_05248488.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841799|gb|EET20213.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 235 Score = 344 bits (883), Expect = 6e-93, Method: Composition-based stats. Identities = 115/232 (49%), Positives = 161/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT +L TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+ +G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D + +M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTNPLMSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM +G ++E+QG+AE FS++ F ML LAK I ++ + Sbjct: 181 EDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232 >gi|161525573|ref|YP_001580585.1| ribonuclease PH [Burkholderia multivorans ATCC 17616] gi|189349699|ref|YP_001945327.1| ribonuclease PH [Burkholderia multivorans ATCC 17616] gi|226736894|sp|A9AEQ7|RNPH_BURM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|160343002|gb|ABX16088.1| ribonuclease PH [Burkholderia multivorans ATCC 17616] gi|189333721|dbj|BAG42791.1| ribonuclease PH [Burkholderia multivorans ATCC 17616] Length = 246 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 129/238 (54%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLLAAGKL--ERSPIVDHVAAISVGVYEGTPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGTLVQLQKDVLG 242 >gi|167837502|ref|ZP_02464385.1| ribonuclease PH [Burkholderia thailandensis MSMB43] Length = 243 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 125/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +Q+R++ +TR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVTQLVAAGKI--ARSPITDYVAAISVGVFGGAPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ + Sbjct: 185 DSACDTDMNIVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQAGIGELVRLQRAALE 242 >gi|260913198|ref|ZP_05919680.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] gi|260632785|gb|EEX50954.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] Length = 238 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q R+I +TR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPNERANHQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + +N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALCDAINGL--VANGTLKTNPIKGLVAAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE F+ D +L+LAK + Q+ ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFNHDELLTLLDLAKQGCETIFVAQRQALA 237 >gi|92115783|ref|YP_575512.1| ribonuclease PH [Nitrobacter hamburgensis X14] gi|122418904|sp|Q1QRU5|RNPH_NITHX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91798677|gb|ABE61052.1| RNAse PH [Nitrobacter hamburgensis X14] Length = 237 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 144/239 (60%), Positives = 183/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+QGGR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC+ M+ + + VL+ +VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCIGWMK--ARNMIKTSVLRDNVAAVSCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFVMT G I+EVQG+AE+ FSQD F A+L LAK +A L+ LQK ++ Sbjct: 179 EDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALLALAKKGVARLVDLQKMAVA 237 >gi|226941559|ref|YP_002796633.1| RnpH [Laribacter hongkongensis HLHK9] gi|254808590|sp|C1DCK5|RNPH_LARHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226716486|gb|ACO75624.1| RnpH [Laribacter hongkongensis HLHK9] Length = 238 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 125/237 (52%), Positives = 169/237 (71%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R + R +++AEGS LV+FGDT ++ TAT+EE VP +++ GW+T Sbjct: 1 MRPSQRAASELRPVRFIRHYTRHAEGSVLVEFGDTKVICTATVEESVPGFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+Q GR+QEIQR+IGR+LR+VVDL LG RQI++DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GAWVAL D + + + L+ HVAA+S GM+ G P++DLDY Sbjct: 121 ADGGTRTASISGAWVALADAIDGL--MAKGLLTENPLRDHVAAVSVGMVDGQPVLDLDYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS D D N VMT G VE+QG+AE FS++ A+L LA + I ++ LQ+ Sbjct: 179 EDSGCDTDMNVVMTGQGGFVEIQGTAEGVPFSREDMQALLALADEGIRAIVGLQQAA 235 >gi|297160096|gb|ADI09808.1| ribonuclease PH [Streptomyces bingchenggensis BCW-1] Length = 243 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 113/240 (47%), Positives = 158/240 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +++ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVTIERAWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADALTWGQGKKLIKAGRQPLTGTVSAVSVGIVGGIPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D + D N V T G VEVQG+AE F+++ +L+LA +L ++Q+ ++ E Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCGELAEIQRAALAGE 242 >gi|302534682|ref|ZP_07287024.1| ribonuclease PH [Streptomyces sp. C] gi|302443577|gb|EFL15393.1| ribonuclease PH [Streptomyces sp. C] Length = 244 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 115/241 (47%), Positives = 154/241 (63%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS L+ FGDT + TA+ E VP W + + GW+T+ Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIAWGQGKKLIKAGRKPLTGTVAAVSVGIVDGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D + D N V T G VEVQG+AE F + A+L+LA ADL LQ + + Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADLEALQLGALDLQ 242 Query: 242 V 242 V Sbjct: 243 V 243 >gi|253997760|ref|YP_003049823.1| ribonuclease PH [Methylovorus sp. SIP3-4] gi|253984439|gb|ACT49296.1| ribonuclease PH [Methylovorus sp. SIP3-4] Length = 238 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 129/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R I + R +K+AEGS LVKFGDTH+L TA+++EKVP ++R GW+T Sbjct: 1 MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD + + + L+ VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALHDAISRL--LAQGLISESPLRDSVAAVSVGVYQGTPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG VE+QG+AE F + ML+LA I +L LQ + Sbjct: 179 EDSDCDTDMNVVMTGSGGYVEIQGTAEGVPFQRADMDRMLDLAAAGIRELTSLQAKALG 237 >gi|27375785|ref|NP_767314.1| ribonuclease PH [Bradyrhizobium japonicum USDA 110] gi|61216053|sp|Q89WK4|RNPH_BRAJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|27348923|dbj|BAC45939.1| Ribonuclease PH [Bradyrhizobium japonicum USDA 110] Length = 237 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 137/239 (57%), Positives = 181/239 (75%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GW+T Sbjct: 1 MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++++L ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATSERTRREASAGKQSGRTVEIQRLIGRSLRTIINLEALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC+ M+ + + VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARNMVKANVLRDNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT G I+EVQG+AER F+QD A++ LA+ IA L+ LQK ++ Sbjct: 179 EDSEAQTDANFVMTGDGRIIEVQGTAEREPFTQDELLALMALAQKGIARLVDLQKLAVA 237 >gi|124515183|gb|EAY56694.1| ribonuclease PH [Leptospirillum rubarum] Length = 245 Score = 344 bits (883), Expect = 8e-93, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +R +S+ V+ YAEGS LV+ G+T +L TA++EEKVP ++++ GW+T Sbjct: 2 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSVVD +G R I IDCDV+Q Sbjct: 62 AEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +VA+ + ++ ++AA+S G++ G P++DL Y Sbjct: 122 ADGGTRTASISGGFVAMCLAFSELHK--RGLMPEWPVREYLAAVSVGVVEGEPVLDLCYT 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT+SGH VE+QG+AE FS+ +L L + I ++I QK V S Sbjct: 180 EDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIVCQKSVFS 238 >gi|77361698|ref|YP_341273.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas haloplanktis TAC125] gi|123588968|sp|Q3IJI0|RNPH_PSEHT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|76876609|emb|CAI87831.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas haloplanktis TAC125] Length = 237 Score = 344 bits (883), Expect = 8e-93, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R NQ+R ++ TR + +AEGS LV+FG+T +L TAT+E VP +++ GWI Sbjct: 1 MRPSERTANQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L HM + S LK +AAIS G+ G I DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKYMIAAISVGIYKGQAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N ++T++G I+E+QG+AE FS D +L LAK I ++I +QK ++ Sbjct: 179 EDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237 >gi|258620570|ref|ZP_05715607.1| ribonuclease PH [Vibrio mimicus VM573] gi|262172697|ref|ZP_06040375.1| ribonuclease PH [Vibrio mimicus MB-451] gi|258587085|gb|EEW11797.1| ribonuclease PH [Vibrio mimicus VM573] gi|261893773|gb|EEY39759.1| ribonuclease PH [Vibrio mimicus MB-451] Length = 238 Score = 343 bits (882), Expect = 8e-93, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+ I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKK--NPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238 >gi|302545021|ref|ZP_07297363.1| tRNA nucleotidyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302462639|gb|EFL25732.1| tRNA nucleotidyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 241 Score = 343 bits (882), Expect = 8e-93, Method: Composition-based stats. Identities = 111/238 (46%), Positives = 156/238 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVNEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAITWAQGKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V T G VEVQG+AE F+++ ++L+LA +L Q+ + Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNSLLDLAVGGCVELAGNQRAALG 240 >gi|145639813|ref|ZP_01795414.1| ribonuclease PH [Haemophilus influenzae PittII] gi|145271031|gb|EDK10947.1| ribonuclease PH [Haemophilus influenzae PittII] gi|309750310|gb|ADO80294.1| Ribonuclease PH [Haemophilus influenzae R2866] Length = 238 Score = 343 bits (882), Expect = 8e-93, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRESLG 237 >gi|37528679|ref|NP_932024.1| ribonuclease PH [Photorhabdus luminescens subsp. laumondii TTO1] gi|61215997|sp|Q7MAX2|RNPH_PHOLL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|36788118|emb|CAE17242.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 242 Score = 343 bits (882), Expect = 9e-93, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 158/240 (65%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R I++TR +K+AEGS LV+FGDT +L A++EE VP +++ GW+T Sbjct: 1 MRPTGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + LK VAA+S G++ G DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNKIVEAGKL--KESPLKSMVAAVSVGIVDGEGRCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS D ++L LAK + D+ Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLALAKGGLEDIFDAQRNALKQ 238 >gi|261491672|ref|ZP_05988254.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494209|ref|ZP_05990709.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310112|gb|EEY11315.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312687|gb|EEY13808.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 238 Score = 343 bits (882), Expect = 9e-93, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ+REI +TR ++YAEGS L++FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL+D + + ++ + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VADGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G +VEVQG+AE FS +L+LAK I+ L++ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238 >gi|297199995|ref|ZP_06917392.1| ribonuclease PH [Streptomyces sviceus ATCC 29083] gi|197710467|gb|EDY54501.1| ribonuclease PH [Streptomyces sviceus ATCC 29083] Length = 245 Score = 343 bits (882), Expect = 9e-93, Method: Composition-based stats. Identities = 112/237 (47%), Positives = 155/237 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKLIKAGRRPLTGTVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + D N V T G VEVQG+AE F++D ++L+LA ++L LQ + Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFARDELNSLLDLAVLGCSELTVLQSKAL 239 >gi|307256075|ref|ZP_07537863.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865497|gb|EFM97392.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 238 Score = 343 bits (882), Expect = 9e-93, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRKLNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237 >gi|315497101|ref|YP_004085905.1| ribonuclease ph [Asticcacaulis excentricus CB 48] gi|315415113|gb|ADU11754.1| ribonuclease PH [Asticcacaulis excentricus CB 48] Length = 250 Score = 343 bits (882), Expect = 9e-93, Method: Composition-based stats. Identities = 122/237 (51%), Positives = 167/237 (70%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R S RQ +Q+R+++L V++YAEGSCL+ G T +L TA++E+ VP +++ GW+T Sbjct: 13 FRPSNRQADQLRKVTLETGVTRYAEGSCLITVGHTKVLATASVEQGVPPFLKGKGQGWVT 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ Sbjct: 73 AEYGMLPRSTHTRSRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQ 132 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+IT AWVAL + + K + + VAA+SCG+ P++DLDY Sbjct: 133 ADGGTRCASITAAWVALSLACDKLLE--QKLISASPIIDQVAAVSCGVFENVPVLDLDYD 190 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDST + D+NFV+T SGHIVE+Q + E+ FS+D F + +LA +L LQ++ Sbjct: 191 EDSTAETDSNFVLTGSGHIVEIQATGEKRGFSRDEFNTLFDLATQGATELFALQREA 247 >gi|307249253|ref|ZP_07531250.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858777|gb|EFM90836.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 238 Score = 343 bits (882), Expect = 9e-93, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVNGNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237 >gi|91787235|ref|YP_548187.1| ribonuclease PH [Polaromonas sp. JS666] gi|91696460|gb|ABE43289.1| RNAse PH [Polaromonas sp. JS666] Length = 243 Score = 343 bits (882), Expect = 9e-93, Method: Composition-based stats. Identities = 125/241 (51%), Positives = 168/241 (69%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R + +R + +TR + YAEGS L++FG T +L TA++EEKVP + + GW+T Sbjct: 5 VRVDARAADALRPVRITRHYTAYAEGSVLIEFGGTKVLCTASVEEKVPGHKKGSGEGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR++RSV DL LG R I +DCDVIQ Sbjct: 65 AEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRSVFDLKKLGERTIYLDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ D + + + + HVAAIS G++ G P++DL+Y Sbjct: 125 ADGGTRTASITGAFVAVQDAVNQLLALGKLQET--PILDHVAAISVGIVQGTPLLDLEYT 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT +G+ VEVQG+AE A FS+ A+L LA+ IA+L+ LQK +SN Sbjct: 183 EDSACDTDMNVVMTGAGNYVEVQGTAEGAAFSRKEMDALLVLAEKGIAELVGLQKKSLSN 242 Query: 241 E 241 E Sbjct: 243 E 243 >gi|163802281|ref|ZP_02196176.1| ribonuclease PH [Vibrio sp. AND4] gi|159174086|gb|EDP58896.1| ribonuclease PH [Vibrio sp. AND4] Length = 238 Score = 343 bits (882), Expect = 9e-93, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ D + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L AK I +++ QK + N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALEN 238 >gi|322383243|ref|ZP_08057054.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152512|gb|EFX45298.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 251 Score = 343 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ N++R + +T +K+AEGS L++ GDT ++ TAT+EE+VP +++N GW+T Sbjct: 1 MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATIEERVPPFLKNEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA G+ GGR+ EIQR+IGRALRSV++L ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATQVRNQREASKGKLGGRTMEIQRLIGRALRSVINLEALGERSITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA++A+ + + + +K + ++A++S G++ G ++DL Y Sbjct: 121 ADGGTRTTSITGAFIAMSLAIHKLME--DKKITVNPITDYLASVSVGIVQGETLLDLMYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT GH VEVQG+ E + FS+D ML LA++ I LI+LQ++ + Sbjct: 179 EDSQAHVDMNVVMTGRGHFVEVQGTGEESPFSKDDLDRMLGLAEEGILRLIELQREALG 237 >gi|114321593|ref|YP_743276.1| ribonuclease PH [Alkalilimnicola ehrlichii MLHE-1] gi|122310932|sp|Q0A5V1|RNPH_ALHEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|114227987|gb|ABI57786.1| RNAse PH [Alkalilimnicola ehrlichii MLHE-1] Length = 238 Score = 343 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 125/239 (52%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +++R + LTR +++AEGS LV+FGDT +L TA++EE+VP W+RN GW+T Sbjct: 1 MRPSGRKPDELRPVRLTRHYTRHAEGSVLVEFGDTRVLCTASVEERVPPWLRNQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R REA G+Q GR+ EIQR+IGRALR+ VDL ALG R++++DCDV+Q Sbjct: 61 AEYGMLPRSTGTRNDREAARGKQQGRTIEIQRLIGRALRAAVDLEALGERRVVLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + G VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAYVALVDACNLLRKEGRI--RRSPIFGQVAAVSVGIYQGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM ++G +E+QG+AE F +D AM LA+ +A LI+ Q+ + Sbjct: 179 EDSEAETDMNVVMNEAGGFIELQGTAEGHAFRRDELNAMTELAELGVAQLIETQRQALE 237 >gi|313199824|ref|YP_004038482.1| ribonuclease ph [Methylovorus sp. MP688] gi|312439140|gb|ADQ83246.1| ribonuclease PH [Methylovorus sp. MP688] Length = 238 Score = 343 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R I + R +K+AEGS LVKFGDTH+L TA+++EKVP ++R GW+T Sbjct: 1 MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD + + + L VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALHDAISRL--LAQGLISESPLLDSVAAVSVGVYQGTPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG VE+QG+AE F + ML+LA I +L LQ + Sbjct: 179 EDSDCDTDMNVVMTGSGGYVEIQGTAEGVPFQRADMDRMLDLAAAGIRELTTLQTKALG 237 >gi|294501440|ref|YP_003565140.1| ribonuclease PH [Bacillus megaterium QM B1551] gi|294351377|gb|ADE71706.1| ribonuclease PH [Bacillus megaterium QM B1551] Length = 248 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 113/238 (47%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL GR+ N++R +SL K+ EGS L+ GDT ++ TA+++++VP ++R GWIT Sbjct: 1 MRLDGREFNELRPVSLHTSYLKHPEGSVLISVGDTKVICTASIDDRVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL +G + I IDCDVIQ Sbjct: 61 AEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ + + + ++ ++ ++AA S G+ I+DL+Y Sbjct: 121 ADGGTRTASITGAFVAMVLAFGKLVEENKLTEI--PIRDYLAATSVGIHGENSILDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST +VD N VMT SG VE+QG+ E +TFS++ +L+L + + LI+ QK+V+ Sbjct: 179 EDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEVL 236 >gi|254784432|ref|YP_003071860.1| ribonuclease PH [Teredinibacter turnerae T7901] gi|259494129|sp|C5BLF9|RNPH_TERTT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|237687110|gb|ACR14374.1| tRNA nucleotidyltransferase [Teredinibacter turnerae T7901] Length = 239 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 130/240 (54%), Positives = 176/240 (73%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR NQ+R+IS+TR +++AEGS LV FGDT ++ TAT+EE VP +++ GW+T Sbjct: 2 LRPSGRAANQLRDISITRHYTRHAEGSVLVCFGDTKVICTATVEEGVPRFLKGEGQGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL+ LG I IDCDVIQ Sbjct: 62 AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTLLGEHSITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L+ M+ K + L+ VA++S GM G ++DLDY Sbjct: 122 ADGGTRTASITGACVALVDALRFMQRS--KMIQTDPLRHLVASVSVGMYQGEAVLDLDYP 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE+A FS+D F M LAK+ I++L + Q+ +++ Sbjct: 180 EDSNADTDMNMVMTEQGGLIEIQGTAEQAPFSEDEFIQMFTLAKEGISELCEFQRQSLTD 239 >gi|34499302|ref|NP_903517.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472] gi|61215999|sp|Q7MBD4|RNPH_CHRVO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|34105153|gb|AAQ61509.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472] Length = 238 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 129/239 (53%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MR + LTR +K+AEGS LV+FGDT ++ TA++EE VP +++ GW+T Sbjct: 1 MRPSQRSADAMRVVRLTRSYTKHAEGSVLVEFGDTKVICTASVEETVPSFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++RE+ +G+Q GR+QEIQR+IGR+LR+V DL+ LG RQI+IDCDVIQ Sbjct: 61 AEYGMLPRSTGSRMRRESAAGKQSGRTQEIQRLIGRSLRAVTDLAKLGERQIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ + D L+ VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALADAIRGLIDAGKLSAT--PLRDQVAAVSVGVYKGQPVLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT SG VEVQG+AE FS++ AML LA+ IA+L+ Q+ ++ Sbjct: 179 EDSDCETDMNVVMTGSGRFVEVQGTAEGEPFSEEEMAAMLGLARKGIAELLAHQRQALN 237 >gi|320539880|ref|ZP_08039539.1| defective ribonuclease PH [Serratia symbiotica str. Tucson] gi|320030066|gb|EFW12086.1| defective ribonuclease PH [Serratia symbiotica str. Tucson] Length = 238 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPVGRAPQHVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG II+DCDV+Q Sbjct: 61 AEYSMLPRSTHSRNVREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTIILDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N + +KG VAA+S G+L G + DL+Y Sbjct: 121 ADGGTRTASITGACVALIDALNAL--VANGKLKANPMKGLVAAVSVGILNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS D A+L LA+ I + + QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELMALLTLARGGIETIFQAQKAALAG 238 >gi|145297207|ref|YP_001140048.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449] gi|142849979|gb|ABO88300.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449] Length = 240 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 121/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R Q+R +++TR +K+AEGS LV+FG+T +L TA+++ VP +++ GW+TA Sbjct: 3 RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKGQGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST +R+ REA +G+Q GR+ EI R+I R+LR+ VDL+ALG I +DCDV+QA Sbjct: 63 EYGMLPRSTHSRMNREAAAGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L M + LK +AA+S GM G I DL+Y E Sbjct: 123 DGGTRTASITGACVALVDALNWMVE--KGMIKQSPLKQMIAAVSVGMYQGEAICDLEYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N VMT+ G I+EVQG+AE F+ + AML LAK I ++I LQK +S Sbjct: 181 DSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLAMLGLAKGGIEEIIALQKQSLS 238 >gi|260779667|ref|ZP_05888557.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450] gi|260604476|gb|EEX30780.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450] Length = 238 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRQADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLIENGKLKK--NPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE F+ +L A I +++ QK + N Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 238 >gi|221201201|ref|ZP_03574241.1| ribonuclease PH [Burkholderia multivorans CGD2M] gi|221206345|ref|ZP_03579358.1| ribonuclease PH [Burkholderia multivorans CGD2] gi|221213625|ref|ZP_03586599.1| ribonuclease PH [Burkholderia multivorans CGD1] gi|221166414|gb|EED98886.1| ribonuclease PH [Burkholderia multivorans CGD1] gi|221173654|gb|EEE06088.1| ribonuclease PH [Burkholderia multivorans CGD2] gi|221179051|gb|EEE11458.1| ribonuclease PH [Burkholderia multivorans CGD2M] Length = 246 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 129/238 (54%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +++R+++LTR +K+AEGS LV+FGDT ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R I +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + HVAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLLAAGKL--ERSPIVDHVAAISVGVYEGTPVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I L++LQKDV+ Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMDALLDLAQSGIGTLVQLQKDVLG 242 >gi|330831556|ref|YP_004394508.1| RNase PH [Aeromonas veronii B565] gi|328806692|gb|AEB51891.1| RNase PH [Aeromonas veronii B565] Length = 238 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R Q+R +++TR +K+AEGS LV+FG+T +L TA+++ VP +++ GW+TA Sbjct: 3 RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST +R+ REA SG+Q GR+ EI R+I R+LR+ VDL+ALG I +DCDV+QA Sbjct: 63 EYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L M + LK +AA+S GM G I DL+Y E Sbjct: 123 DGGTRTASITGACVALVDALNWMVE--KGMIKQSPLKQMIAAVSVGMYQGEAICDLEYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N VMT+ G I+EVQG+AE F+ + ML LAK IAD+I LQK +S Sbjct: 181 DSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQSLS 238 >gi|52842229|ref|YP_096028.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294910|ref|YP_127325.1| ribonuclease PH [Legionella pneumophila str. Lens] gi|54297939|ref|YP_124308.1| ribonuclease PH [Legionella pneumophila str. Paris] gi|21759423|sp|Q9X528|RNPH_LEGPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215813|sp|Q5WV28|RNPH_LEGPL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215816|sp|Q5X3P0|RNPH_LEGPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215829|sp|Q5ZTZ6|RNPH_LEGPH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|4704704|gb|AAD28218.1|AF120720_1 ribonuclease PH [Legionella pneumophila 130b] gi|52629340|gb|AAU28081.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751724|emb|CAH13146.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Legionella pneumophila str. Paris] gi|53754742|emb|CAH16229.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Legionella pneumophila str. Lens] gi|307610737|emb|CBX00344.1| ribonuclease PH [Legionella pneumophila 130b] Length = 235 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 115/237 (48%), Positives = 164/237 (69%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R +++TR + YAEGS LV+FG T ++ A++ E VP +++ GWIT Sbjct: 1 MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASIVEGVPRFLKGKNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+IGR+LR+ +DL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+ VA+ D + M ++ +VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGSCVAMRDAIHWMVQREKIKKM--PAFNYVAAVSVGIYRGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED + D N VM + GH +EVQG+AE +F+++ +ML+LA+ I LI++QK+ Sbjct: 179 EDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQKNA 235 >gi|308047849|ref|YP_003911415.1| ribonuclease PH [Ferrimonas balearica DSM 9799] gi|307630039|gb|ADN74341.1| ribonuclease PH [Ferrimonas balearica DSM 9799] Length = 238 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +Q+R +S+TR + +AEGS LV FG+T ++ TA++EE VP ++R GWIT Sbjct: 1 MRSNGRAADQVRPVSITRNFTAHAEGSVLVAFGNTKVICTASVEESVPRFLRGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+ EIQR+IGR+LR+ VDL ALG I IDCDVIQ Sbjct: 61 AEYGMLPRATHSRNDREAARGKQSGRTMEIQRLIGRSLRAAVDLEALGEVTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + H++ + LK +AAIS G++ + + DLDY Sbjct: 121 ADGGTRTAAITGACVALMDAIDHLK--AKGVLKVSPLKQQIAAISVGVVGEHAVCDLDYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + D N VM + G I+EVQG+AE F+ + M+ LAK I LI QK +N Sbjct: 179 EDSSAETDMNVVMAEDGRIIEVQGTAEGEPFTYEQMLEMMALAKTGIEQLIAAQKAAYNN 238 >gi|113461435|ref|YP_719504.1| ribonuclease PH [Haemophilus somnus 129PT] gi|123132220|sp|Q0I4U1|RNPH_HAES1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|112823478|gb|ABI25567.1| RNAse PH [Haemophilus somnus 129PT] Length = 238 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ R I +TR +K+AEGS LV+FG+T ++ TAT+E+ VP +++ GW+T Sbjct: 1 MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALIDAINFL--LKNGTLTTNPIKGLVAAISVGIVNGETVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS +L+LAK L Q+ ++ Sbjct: 179 EDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQRVALAE 238 >gi|158319608|ref|YP_001512115.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs] gi|158139807|gb|ABW18119.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs] Length = 247 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 121/238 (50%), Positives = 167/238 (70%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ N++R + TR ++YA+GS LV+ G+T ++ TAT+E+KVP +++NT GWITA Sbjct: 3 RIDGRKNNELRPVKFTRNFTRYAQGSVLVEMGETKVICTATIEDKVPPFLKNTGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST +R RE+ G+ GR+QEIQR+IGRALRSVVDL ALG R + IDCDVIQA Sbjct: 63 EYSMLPSSTQSRKVRESSRGKVEGRTQEIQRLIGRALRSVVDLDALGERTLWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG++VAL D L +++ S ++ V+AIS G++ G ++DL Y E Sbjct: 123 DGGTRTASITGSFVALVDALNKLKE--EGAIESIPVRSFVSAISVGIINGEAMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DST VD N VMTD G VEVQG+ E + F++ +L L + +LI+LQK+ + Sbjct: 181 DSTAKVDMNIVMTDRGEFVEVQGTGEESPFAKADLMNLLELGEKGNLELIQLQKEALG 238 >gi|85711491|ref|ZP_01042549.1| RNase PH [Idiomarina baltica OS145] gi|85694643|gb|EAQ32583.1| RNase PH [Idiomarina baltica OS145] Length = 237 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R +++TR +K+AEGS L++FGDT +L AT+E VP +++ GW+T Sbjct: 1 MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGDTKVLCNATVEAGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R +REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q Sbjct: 61 AEYSMLPRSTHTRSQREAARGKQGGRTMEIQRLIARSLRACIDLKALGENTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L +M ++K LK VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNYMR--ASKMVKVNPLKEMVAAISVGIVDGDAVSDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G +E+QG+AE FS D +++++A+ I +LI +QK ++ Sbjct: 179 EDSQAETDMNVVMTEAGKFIEIQGTAEGEAFSYDEMQSLVDIARVSIKELIDIQKAALA 237 >gi|84622697|ref|YP_450069.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899009|ref|YP_199782.2| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331] gi|188578263|ref|YP_001915192.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A] gi|123522908|sp|Q2P6N2|RNPH_XANOM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736951|sp|B2SLL1|RNPH_XANOP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|84366637|dbj|BAE67795.1| Ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522715|gb|ACD60660.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A] Length = 241 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDTH+L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGEIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + DL LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQRAALAG 241 >gi|167626670|ref|YP_001677170.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189043763|sp|B0U040|RNPH_FRAP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|167596671|gb|ABZ86669.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 235 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 115/232 (49%), Positives = 161/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT +L TA++ VP + +++ GW+T Sbjct: 1 MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+ +G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D + +M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTSPLMSQVAAISVGIFNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM +G ++E+QG+AE FS++ F ML LAK I ++ + Sbjct: 181 EDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232 >gi|319761729|ref|YP_004125666.1| ribonuclease ph [Alicycliphilus denitrificans BC] gi|317116290|gb|ADU98778.1| ribonuclease PH [Alicycliphilus denitrificans BC] Length = 245 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TRR + +AEGS L++FG+T +L TA++EEKVP R + GW+TA Sbjct: 9 RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R + IDCDVIQA Sbjct: 69 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA HD + + + + G VAA+S G++ G P++DL+Y E Sbjct: 129 DGGTRTAAITGAWVAAHDAVGTLLAAGKV--AASPITGAVAAVSVGIVQGQPLLDLEYVE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D D N VMT +GH VEVQG+AE A FS+ +L LA+ IA+L+ LQ++ + N Sbjct: 187 DVACDTDMNVVMTGAGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELVLLQQESLRN 245 >gi|83719437|ref|YP_442125.1| ribonuclease PH [Burkholderia thailandensis E264] gi|167580996|ref|ZP_02373870.1| ribonuclease PH [Burkholderia thailandensis TXDOH] gi|167619073|ref|ZP_02387704.1| ribonuclease PH [Burkholderia thailandensis Bt4] gi|257138313|ref|ZP_05586575.1| ribonuclease PH [Burkholderia thailandensis E264] gi|123537265|sp|Q2SY74|RNPH_BURTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|83653262|gb|ABC37325.1| ribonuclease PH [Burkholderia thailandensis E264] Length = 243 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 123/238 (51%), Positives = 169/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +Q+R++ +TR +K+AEGS LV+FG+T ++ TA++ E+VP ++R GW+TA Sbjct: 7 RPSGRRADQLRDVRITRHYTKHAEGSVLVEFGETKVICTASVVERVPEFLRERGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLVAAGKI--ARSPITDYVAAISVGVFGGAPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+ A+L+LA+ I +L++LQ+ + Sbjct: 185 DSACDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRLQRAALE 242 >gi|134095311|ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans] gi|133739214|emb|CAL62263.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Herminiimonas arsenicoxydans] Length = 244 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R I R +K+AEGS L++ GDT ++ TA++E++VP +++ GW+TA Sbjct: 6 RPSGRAADALRAIKFIRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R+ REA G+Q GR+QEIQR+IGR+LR+ DL A G R + +DCDVIQA Sbjct: 66 EYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG VA +D + + + LK VAAIS G+ G P++DLDY E Sbjct: 126 DGGTRTAAITGTMVAAYDAFSKL--VAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMTD+GH +EVQG+AE A F + +L+LA+D I DLI +QK ++ Sbjct: 184 DSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDRLLDLAQDGIRDLIVMQKQALA 241 >gi|162329623|ref|YP_001218468.2| ribonuclease PH [Vibrio cholerae O395] gi|262167372|ref|ZP_06035080.1| ribonuclease PH [Vibrio cholerae RC27] gi|262024174|gb|EEY42867.1| ribonuclease PH [Vibrio cholerae RC27] Length = 238 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ +QK + + Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238 >gi|323497057|ref|ZP_08102080.1| ribonuclease PH [Vibrio sinaloensis DSM 21326] gi|323317901|gb|EGA70889.1| ribonuclease PH [Vibrio sinaloensis DSM 21326] Length = 238 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVEKGKL--KANPMKGHVAAVSVGILGEDILCDLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE F+ +L A I++++ QK + N Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGISEIVAAQKAALEN 238 >gi|330826509|ref|YP_004389812.1| ribonuclease PH [Alicycliphilus denitrificans K601] gi|329311881|gb|AEB86296.1| Ribonuclease PH [Alicycliphilus denitrificans K601] Length = 245 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TRR + +AEGS L++FG+T +L TA++EEKVP R + GW+TA Sbjct: 9 RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R + IDCDVIQA Sbjct: 69 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA HD + + + + G VAA+S G++ G P++DL+Y E Sbjct: 129 DGGTRTAAITGAWVAAHDAVGTLLAAGKV--AASPITGAVAAVSVGIVQGQPLLDLEYVE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D D N VMT +GH VEVQG+AE A FS+ +L LA+ IA+L+ LQ++ + N Sbjct: 187 DVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELMLLQQESLRN 245 >gi|239931006|ref|ZP_04687959.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672] gi|291439379|ref|ZP_06578769.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672] gi|291342274|gb|EFE69230.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672] Length = 245 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 114/241 (47%), Positives = 155/241 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R I++ R SK+AEGS LV FGDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R++GR+LR+V+D ALG +++DCDV+QA Sbjct: 63 EYAMLPRATHTRGDRESVKGRIGGRTHEISRLVGRSLRAVIDYKALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG++VAL D + + + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGSYVALADAISWAQGKKLIKAGRRPLTGSVSAVSVGIVGGVPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D D N V T G VEVQG+AE F++ A+L+LA A L Q+ + Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARAELDALLDLAVAGCARLADAQRAALGTV 242 Query: 242 V 242 V Sbjct: 243 V 243 >gi|296113600|ref|YP_003627538.1| ribonuclease PH [Moraxella catarrhalis RH4] gi|295921294|gb|ADG61645.1| ribonuclease PH [Moraxella catarrhalis RH4] gi|326562662|gb|EGE12964.1| ribonuclease PH [Moraxella catarrhalis 103P14B1] gi|326564700|gb|EGE14918.1| ribonuclease PH [Moraxella catarrhalis 46P47B1] gi|326568642|gb|EGE18713.1| ribonuclease PH [Moraxella catarrhalis BC7] gi|326568768|gb|EGE18838.1| ribonuclease PH [Moraxella catarrhalis BC8] gi|326572636|gb|EGE22625.1| ribonuclease PH [Moraxella catarrhalis CO72] gi|326574233|gb|EGE24181.1| ribonuclease PH [Moraxella catarrhalis 101P30B1] gi|326575018|gb|EGE24947.1| ribonuclease PH [Moraxella catarrhalis O35E] Length = 238 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ N++R I R+ +K+AEGS LV FGDT +L TA++E VP W++ GW+T Sbjct: 1 MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I IDCDVIQ Sbjct: 61 AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L+H++ K L G VAA+S G+ G ++DLDY Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQR--RKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D D N VMT +G +E+QG+AE F++ AML+LA+ I +I+ QK V+ Sbjct: 179 EDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVLG 237 >gi|154246476|ref|YP_001417434.1| ribonuclease PH [Xanthobacter autotrophicus Py2] gi|226736952|sp|A7IID4|RNPH_XANP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|154160561|gb|ABS67777.1| ribonuclease PH [Xanthobacter autotrophicus Py2] Length = 237 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 137/239 (57%), Positives = 178/239 (74%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R V ++AEGSCLVKFGDTH+L +ATLEE++P W++ GW+T Sbjct: 1 MRPSKRAADEMRAVSFERGVMRHAEGSCLVKFGDTHVLVSATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R +RE+ +G+Q GR+QEIQR+IGR+LRSV DL ALG +QI +DCDV+Q Sbjct: 61 AEYSMLPRATHDRTRRESTTGKQSGRTQEIQRLIGRSLRSVTDLVALGEKQITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAW+AL+DCL M S LK HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAWIALYDCLSWMRQRS--MVKEIPLKDHVAAVSCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT +G IVE+QG+AE+ FSQD +L+LA+ + L+ LQK + Sbjct: 179 EDSVAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLGLLSLARSGVEKLVGLQKLAVG 237 >gi|294667389|ref|ZP_06732607.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602830|gb|EFF46263.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 241 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDDGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241 >gi|254507299|ref|ZP_05119435.1| ribonuclease PH [Vibrio parahaemolyticus 16] gi|219549759|gb|EED26748.1| ribonuclease PH [Vibrio parahaemolyticus 16] Length = 240 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 63 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ + + +KGHVAA+S G+L + DL+Y Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVEKGKL--KANPMKGHVAAVSVGILGEDILCDLEYT 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE F+ +L A I +++ QK + N Sbjct: 181 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 240 >gi|21244122|ref|NP_643704.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306] gi|24638175|sp|Q8PH63|RNPH_XANAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|21109751|gb|AAM38240.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306] Length = 241 Score = 342 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERSFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLIKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241 >gi|170718459|ref|YP_001783675.1| ribonuclease PH [Haemophilus somnus 2336] gi|189043765|sp|B0UWM2|RNPH_HAES2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|168826588|gb|ACA31959.1| ribonuclease PH [Haemophilus somnus 2336] Length = 238 Score = 342 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ R I +TR +K+AEGS LV+FG+T ++ TAT+E+ VP +++ GW+T Sbjct: 1 MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + N + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALIDAINFL--LQNGTLTTNPIKGLVAAISVGIVNGETVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS +L+LAK L Q+ ++ Sbjct: 179 EDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQRVALAE 238 >gi|316931691|ref|YP_004106673.1| ribonuclease PH [Rhodopseudomonas palustris DX-1] gi|315599405|gb|ADU41940.1| ribonuclease PH [Rhodopseudomonas palustris DX-1] Length = 237 Score = 342 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 143/239 (59%), Positives = 182/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCL M+ + +QVL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLNWMK--ARNMIKTQVLRDNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G +VEVQG+AER FSQD F ++ LA+ +A L+ LQK + Sbjct: 179 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQKMAVG 237 >gi|261250540|ref|ZP_05943115.1| ribonuclease PH [Vibrio orientalis CIP 102891] gi|323495223|ref|ZP_08100305.1| ribonuclease PH [Vibrio brasiliensis LMG 20546] gi|260939109|gb|EEX95096.1| ribonuclease PH [Vibrio orientalis CIP 102891] gi|323310483|gb|EGA63665.1| ribonuclease PH [Vibrio brasiliensis LMG 20546] Length = 238 Score = 342 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D QH+ + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVEKGKL--KANPMKGHVAAVSVGILGEDILCDLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE F+ +L A I +++ QK + N Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 238 >gi|75674392|ref|YP_316813.1| ribonuclease PH [Nitrobacter winogradskyi Nb-255] gi|123614308|sp|Q3SW80|RNPH_NITWN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|74419262|gb|ABA03461.1| RNAse PH [Nitrobacter winogradskyi Nb-255] Length = 237 Score = 342 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 146/239 (61%), Positives = 183/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+QGGR+ EIQR+IGR+LR+ VDL ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC+ M+ + + VL+G+VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARNMLKAGVLRGNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFVMT G I+EVQG+AE+ FS D F A++ LAK +A L+ LQK ++ Sbjct: 179 EDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237 >gi|184200648|ref|YP_001854855.1| ribonuclease PH [Kocuria rhizophila DC2201] gi|183580878|dbj|BAG29349.1| ribonuclease PH [Kocuria rhizophila DC2201] Length = 244 Score = 342 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 114/240 (47%), Positives = 161/240 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R I++TR S+ AEGS L++FG T +L TA+L E VP W++ GW+T Sbjct: 1 MRADGRSVAELRPITITRGWSEQAEGSALIEFGGTRVLCTASLTEGVPRWLKGEGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++DL ALG +++DCDV+Q Sbjct: 61 AEYAMLPRATSTRSARESVKGKIGGRTHEISRLIGRSLRSIIDLEALGENTVVLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL + + D + L VAA+S G++ G P++DL Y Sbjct: 121 ADGGTRTASITGAYVALAEAINWAHDNGVLKRRVNPLTDSVAAVSVGIIDGVPMLDLPYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N V+T SG VEVQG+AE A F +D A+L+LA + L ++Q++ + + Sbjct: 181 EDVRAETDMNVVVTGSGDFVEVQGTAEGAPFRRDELDALLDLAVAGCSQLAQIQRETLES 240 >gi|39933406|ref|NP_945682.1| ribonuclease PH [Rhodopseudomonas palustris CGA009] gi|192288763|ref|YP_001989368.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1] gi|61215953|sp|Q6NCY8|RNPH_RHOPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736930|sp|B3Q968|RNPH_RHOPT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|39647252|emb|CAE25773.1| ribonuclease PH [Rhodopseudomonas palustris CGA009] gi|192282512|gb|ACE98892.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1] Length = 237 Score = 342 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 143/239 (59%), Positives = 181/239 (75%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCL M+ + QVL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLNWMK--ARNMIKGQVLRDNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G +VEVQG+AER FSQD F ++ LA+ +A L+ LQK + Sbjct: 179 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQKMAVG 237 >gi|167570847|ref|ZP_02363721.1| ribonuclease PH [Burkholderia oklahomensis C6786] Length = 243 Score = 342 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 126/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ NQ+R++ +TRR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R + +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRTLHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLVSTGKI--PRSPITDYVAAISVGVFGGAPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT SG VEVQG+AE FS+ A+L+LA+ I +L+++Q+ + Sbjct: 185 DSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQRAALE 242 >gi|291278861|ref|YP_003495696.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1] gi|290753563|dbj|BAI79940.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1] Length = 238 Score = 342 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++MR I +T KY EGS L++FG+T ++ A++ E VP +++ T GWIT Sbjct: 1 MRSDGRKNDEMRLIKITTDYIKYPEGSVLIEFGETKVICNASITEGVPPFLKGTGTGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GR+QEI R+IGRALRSVVD+S LG R ++IDCDVIQ Sbjct: 61 AEYSMLPRATHTRNVRESVKGKLSGRTQEISRLIGRALRSVVDMSVLGERTVVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +VAL+ + + + +K VAA+S G+L I+DL+Y Sbjct: 121 ADGGTRTASISGGFVALYSAFEKLVKSGELEK--NPIKNFVAAVSVGVLNDDVILDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST VD N V TDSG I+E+QG+ E + FS+D M++ A I ++I+ QK + Sbjct: 179 EDSTARVDMNVVATDSGEIIEIQGTGEESPFSRDVLNKMIDYAFIGINNIIEAQKKALG 237 >gi|225849820|ref|YP_002730054.1| ribonuclease PH [Persephonella marina EX-H1] gi|254808597|sp|C0QTN9|RNPH_PERMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|225646433|gb|ACO04619.1| ribonuclease PH [Persephonella marina EX-H1] Length = 261 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 159/240 (66%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ Q+R + + R + YAEGS L++ G+T ++ TA++EEKVP ++R T GWIT Sbjct: 1 MRPDGRKPTQLRPVKIIRDFNIYAEGSVLIEMGNTKVIITASIEEKVPPFLRGTGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R RE V G GR+QEIQR+IGR+LR VVDL LG R + +DCDVIQ Sbjct: 61 AEYAMLPRSTESRSIREVVRGAPSGRTQEIQRLIGRSLRGVVDLKKLGERTLWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGA++A+ D + + + Q LK +VAAIS G++ ++DL++ Sbjct: 121 ADGGTRVASITGAFIAVADAMIKLTESGKVRQ--NPLKDYVAAISTGIVGNEVVLDLNFK 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ VD N VMT SG+ VEVQ + E +F+Q F ML K I LI +QK I Sbjct: 179 EDSSAKVDMNLVMTGSGNFVEVQATGEEYSFTQQEFDKMLEYGKLGINKLIHIQKKFIEG 238 >gi|237785978|ref|YP_002906683.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385] gi|259494118|sp|C4LJY5|RNPH_CORK4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|237758890|gb|ACR18140.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385] Length = 254 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 105/241 (43%), Positives = 162/241 (67%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR ++MR + + R + GS LV+FG+T ++ TA++E++VP + +++ GW+T Sbjct: 5 VRADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGWLT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ +DL ALG I +DCDV+Q Sbjct: 65 AEYSMLPSATAERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLKALGENTIALDCDVLQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D L ++E + L VAA+S G++ G+ +DL Y Sbjct: 125 ADGGTRTASITGAYVALADALTYLE--AEGLVSQNALLPPVAAVSVGLIDGHVCLDLPYE 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N VMT+SG VE+QG+ E +TFS++ ++ A+ ++LI+ QK+ +S Sbjct: 183 EDSRAEVDMNVVMTESGEFVEIQGTGEHSTFSREQLMQFMDAAEKGCSELIRAQKEALSK 242 Query: 241 E 241 Sbjct: 243 P 243 >gi|53720176|ref|YP_109162.1| ribonuclease PH [Burkholderia pseudomallei K96243] gi|53726007|ref|YP_103672.1| ribonuclease PH [Burkholderia mallei ATCC 23344] gi|124386333|ref|YP_001028601.1| ribonuclease PH [Burkholderia mallei NCTC 10229] gi|126449191|ref|YP_001081500.1| ribonuclease PH [Burkholderia mallei NCTC 10247] gi|126454192|ref|YP_001067258.1| ribonuclease PH [Burkholderia pseudomallei 1106a] gi|134280511|ref|ZP_01767222.1| ribonuclease PH [Burkholderia pseudomallei 305] gi|162139483|ref|YP_992156.2| ribonuclease PH [Burkholderia mallei SAVP1] gi|162210051|ref|YP_334425.2| ribonuclease PH [Burkholderia pseudomallei 1710b] gi|167739724|ref|ZP_02412498.1| ribonuclease PH [Burkholderia pseudomallei 14] gi|167816928|ref|ZP_02448608.1| ribonuclease PH [Burkholderia pseudomallei 91] gi|167825331|ref|ZP_02456802.1| ribonuclease PH [Burkholderia pseudomallei 9] gi|167846833|ref|ZP_02472341.1| ribonuclease PH [Burkholderia pseudomallei B7210] gi|167895425|ref|ZP_02482827.1| ribonuclease PH [Burkholderia pseudomallei 7894] gi|167912075|ref|ZP_02499166.1| ribonuclease PH [Burkholderia pseudomallei 112] gi|167920049|ref|ZP_02507140.1| ribonuclease PH [Burkholderia pseudomallei BCC215] gi|226193870|ref|ZP_03789472.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|242317328|ref|ZP_04816344.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254175672|ref|ZP_04882332.1| ribonuclease PH [Burkholderia mallei ATCC 10399] gi|254181028|ref|ZP_04887626.1| ribonuclease PH [Burkholderia pseudomallei 1655] gi|254191874|ref|ZP_04898377.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237] gi|254202370|ref|ZP_04908733.1| ribonuclease PH [Burkholderia mallei FMH] gi|254259675|ref|ZP_04950729.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a] gi|254298852|ref|ZP_04966302.1| ribonuclease PH [Burkholderia pseudomallei 406e] gi|254356396|ref|ZP_04972672.1| ribonuclease PH [Burkholderia mallei 2002721280] gi|61215844|sp|Q62HZ8|RNPH_BURMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215857|sp|Q63RV5|RNPH_BURPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228270|sp|A3MML4|RNPH_BURM7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228271|sp|A2S9I2|RNPH_BURM9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228272|sp|A3NY37|RNPH_BURP0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|52210590|emb|CAH36573.1| ribonuclease PH [Burkholderia pseudomallei K96243] gi|52429430|gb|AAU50023.1| ribonuclease PH [Burkholderia mallei ATCC 23344] gi|124294353|gb|ABN03622.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10229] gi|126227834|gb|ABN91374.1| ribonuclease PH [Burkholderia pseudomallei 1106a] gi|126242061|gb|ABO05154.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10247] gi|134248518|gb|EBA48601.1| ribonuclease PH [Burkholderia pseudomallei 305] gi|147746617|gb|EDK53694.1| ribonuclease PH [Burkholderia mallei FMH] gi|148025393|gb|EDK83547.1| ribonuclease PH [Burkholderia mallei 2002721280] gi|157808936|gb|EDO86106.1| ribonuclease PH [Burkholderia pseudomallei 406e] gi|157939545|gb|EDO95215.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237] gi|160696716|gb|EDP86686.1| ribonuclease PH [Burkholderia mallei ATCC 10399] gi|184211567|gb|EDU08610.1| ribonuclease PH [Burkholderia pseudomallei 1655] gi|225934175|gb|EEH30160.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|242140567|gb|EES26969.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254218364|gb|EET07748.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a] Length = 243 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 171/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T Sbjct: 6 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ Sbjct: 66 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGVFGGTPVLDLDYD 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ + Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 242 >gi|16079889|ref|NP_390715.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168] gi|221310778|ref|ZP_03592625.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168] gi|221315103|ref|ZP_03596908.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320021|ref|ZP_03601315.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. JH642] gi|221324304|ref|ZP_03605598.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. SMY] gi|321312370|ref|YP_004204657.1| ribonuclease PH [Bacillus subtilis BSn5] gi|133188|sp|P28619|RNPH_BACSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|47168514|pdb|1OYP|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168515|pdb|1OYP|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168516|pdb|1OYP|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168517|pdb|1OYP|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168518|pdb|1OYP|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168519|pdb|1OYP|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168520|pdb|1OYR|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168521|pdb|1OYR|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168522|pdb|1OYR|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168523|pdb|1OYR|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168524|pdb|1OYR|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|47168525|pdb|1OYR|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis gi|143444|gb|AAA22705.1| RNase PH [Bacillus subtilis] gi|1770059|emb|CAA99554.1| RNase PH [Bacillus subtilis] gi|2635302|emb|CAB14797.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168] gi|320018644|gb|ADV93630.1| ribonuclease PH [Bacillus subtilis BSn5] Length = 245 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA++A+ + + + + +AAIS G+ ++DL+Y Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +LI QK+V+ Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 Query: 240 NEV 242 + + Sbjct: 239 DSL 241 >gi|206603687|gb|EDZ40167.1| Ribonuclease PH [Leptospirillum sp. Group II '5-way CG'] Length = 245 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +R +S+ V+ YAEGS LV+ G+T +L TA++EEKVP ++++ GW+T Sbjct: 2 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSVVD +G R I IDCDV+Q Sbjct: 62 AEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +VA+ + ++ ++AA+S G++ G P++DL Y Sbjct: 122 ADGGTRTASISGGFVAMCLAFSELHK--RGLMPEWPVREYLAAVSVGVVEGLPVLDLCYT 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT+SGH VE+QG+AE FS+ +L L + I ++I QK V S Sbjct: 180 EDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIACQKSVFS 238 >gi|167563697|ref|ZP_02356613.1| ribonuclease PH [Burkholderia oklahomensis EO147] Length = 243 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 126/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ NQ+R++ +TRR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+ GW+TA Sbjct: 7 RPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL ALG R + +DCDVIQA Sbjct: 67 EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRTLHLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY E Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLVATGKI--PRSPITDYVAAISVGVFGGAPVLDLDYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT SG VEVQG+AE FS+ A+L+LA+ I +L+++Q+ + Sbjct: 185 DSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQRAALE 242 >gi|239817292|ref|YP_002946202.1| ribonuclease PH [Variovorax paradoxus S110] gi|239803869|gb|ACS20936.1| ribonuclease PH [Variovorax paradoxus S110] Length = 243 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TR + +AEGS L++FG T +L TA++EE+VP R + GW+TA Sbjct: 6 RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASVEERVPPHKRGSGEGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR++R+V DL+ALG R I +DCDV+QA Sbjct: 66 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VA D + + + + ++GHVAAIS G++ G P++DL+Y E Sbjct: 126 DGGTRTAAITGAFVAAQDAVNKL--LAAGTIPASPIRGHVAAISVGIVAGTPLLDLEYTE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D D N VMT +GH VEVQG+AE A FS++ +L LA+ I +LI LQ+ + ++ Sbjct: 184 DSACDTDMNVVMTGAGHFVEVQGTAEGAAFSREEMNLLLGLAEKGIGELIVLQQQSLVSK 243 >gi|322513841|ref|ZP_08066923.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976] gi|322120328|gb|EFX92267.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976] Length = 238 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADSVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ + Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALG 237 >gi|331007601|ref|ZP_08330748.1| Ribonuclease PH [gamma proteobacterium IMCC1989] gi|330418594|gb|EGG93113.1| Ribonuclease PH [gamma proteobacterium IMCC1989] Length = 239 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q R I LT+ +K+AEGS L++FG+T ++ TA++E VP ++R GWITA Sbjct: 3 RPSGRTPDQTRPIRLTKNFTKHAEGSVLIEFGETKVICTASIENSVPGFLRGQGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST +R+ REA G+Q GR+ EIQR+IGR+LR+ VDL LG R I IDCDVIQA Sbjct: 63 EYGMLPRSTHSRMNREAARGKQTGRTVEIQRLIGRSLRAAVDLEVLGERTITIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + +N L +A+IS G+ G ++DLDY E Sbjct: 123 DGGTRTASITGACVALADALNKL--LANGTLKQNPLTRMIASISVGIYQGEAVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS+ D D N VM D G ++EVQG+AE FS+ F ML LAK I +L Q ++ Sbjct: 181 DSSADTDMNIVMADDGGMIEVQGTAEGEPFSEAEFMQMLTLAKKGIKELNAAQLACLAE 239 >gi|254515846|ref|ZP_05127906.1| ribonuclease PH [gamma proteobacterium NOR5-3] gi|219675568|gb|EED31934.1| ribonuclease PH [gamma proteobacterium NOR5-3] Length = 240 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 124/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R+IS+ R+ + +AEGS LV FG+T ++ TA++E+ VP ++R GWITA Sbjct: 3 RPSGRATDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+QEIQR+IGR+LR+ VDLS LG I +DCDVIQA Sbjct: 63 EYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ +K + L+ VA++S G+ G ++DLDY E Sbjct: 123 DGGTRTASITGAFVALVDAINGLQR--DKKISTDPLRHFVASVSVGVYQGEAVLDLDYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM + G +EVQG+AE A FS+ ML+LA I+ LI+ Q+ ++ Sbjct: 181 DSKADTDLNVVMAEHGEFIEVQGTAEAAPFSRTELDQMLDLASGGISTLIECQRQALA 238 >gi|78042648|ref|YP_359184.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901] gi|123577019|sp|Q3AFA0|RNPH_CARHZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|77994763|gb|ABB13662.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901] Length = 254 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 127/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+++Q+R + +T K+AEGS L++ GDT ++ TAT+E+KVP + + GWIT Sbjct: 1 MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATVEDKVPPFAKGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA GRQ GR+ EIQR+IGRALR VVDL ALG R + IDCDVIQ Sbjct: 61 AEYGMLPRSTETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VAL L + + LK VAA+S G++ G I+DL++ Sbjct: 121 ADGGTRTAAITGSFVALALALNKLVE--EGILPVIPLKDFVAAVSVGIVDGEEILDLNFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT S VEVQG+ E ATFS + +L LA+ I +LI+LQK + + Sbjct: 179 EDSKALVDMNVVMTGSNRFVEVQGTGEEATFSMEELQRLLTLAQKGIRELIELQKQALGD 238 >gi|83942034|ref|ZP_00954496.1| ribonuclease PH [Sulfitobacter sp. EE-36] gi|83953083|ref|ZP_00961805.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1] gi|83842051|gb|EAP81219.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1] gi|83847854|gb|EAP85729.1| ribonuclease PH [Sulfitobacter sp. EE-36] Length = 237 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 125/239 (52%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +++R +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRKLDELRAVSIETGFTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD SALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + S L VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALKLAVNKLMKAGDVV--SDPLVDPVAAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF+MT +G ++E+Q SAE +T+S+D +++LA+ +A+L++ QK + Sbjct: 179 EDSEAGVDGNFIMTGTGKLIEIQMSAEGSTYSRDQMNQLMDLAEKGVAELVEKQKAATA 237 >gi|126438556|ref|YP_001059966.1| ribonuclease PH [Burkholderia pseudomallei 668] gi|167903809|ref|ZP_02491014.1| ribonuclease PH [Burkholderia pseudomallei NCTC 13177] gi|166228273|sp|A3NC95|RNPH_BURP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|126218049|gb|ABN81555.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 668] Length = 243 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 125/239 (52%), Positives = 171/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T Sbjct: 6 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ Sbjct: 66 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + + + +VAAIS GM G P++DLDY Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGMFGGTPVLDLDYD 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ + Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 242 >gi|326565518|gb|EGE15689.1| ribonuclease PH [Moraxella catarrhalis 12P80B1] Length = 238 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ N++R I R+ +K+AEGS LV FGDT +L TA++E VP W++ GW+T Sbjct: 1 MRSNNRQNNELRPIYFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I IDCDVIQ Sbjct: 61 AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L+H++ K L G VAA+S G+ G ++DLDY Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQR--RKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D D N VMT +G +E+QG+AE F++ AML+LA+ I +I+ QK V+ Sbjct: 179 EDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVLG 237 >gi|32035564|ref|ZP_00135495.1| COG0689: RNase PH [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207543|ref|YP_001052768.1| ribonuclease PH [Actinobacillus pleuropneumoniae L20] gi|165975512|ref|YP_001651105.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251878|ref|ZP_07338049.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247031|ref|ZP_07529085.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307260507|ref|ZP_07542201.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166228262|sp|A3MYC7|RNPH_ACTP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736879|sp|B0BRL3|RNPH_ACTPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|126096335|gb|ABN73163.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875613|gb|ABY68661.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302649308|gb|EFL79493.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856483|gb|EFM88632.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306869819|gb|EFN01602.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 238 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237 >gi|294627116|ref|ZP_06705704.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|325918115|ref|ZP_08180270.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937] gi|325922286|ref|ZP_08184067.1| RNAse PH [Xanthomonas gardneri ATCC 19865] gi|292598549|gb|EFF42698.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|325535661|gb|EGD07502.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937] gi|325547239|gb|EGD18312.1| RNAse PH [Xanthomonas gardneri ATCC 19865] Length = 241 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241 >gi|126738497|ref|ZP_01754202.1| ribonuclease PH [Roseobacter sp. SK209-2-6] gi|126720296|gb|EBA17002.1| ribonuclease PH [Roseobacter sp. SK209-2-6] Length = 237 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 130/237 (54%), Positives = 170/237 (71%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ N+MR +S+ +K+AEGSCL+K G+TH+L TATLEE+VP +I+ + GW+T Sbjct: 1 MRPSGRELNEMRPVSIETGFTKHAEGSCLIKMGETHVLCTATLEERVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITG WVAL + + + L V+AISCG+ G P++DLDY Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGDVTI--DPLMDPVSAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NF+MT SG ++EVQ SAE + FS+D +++LA+ ++L LQK Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSIFSRDQMNQLMDLAEKGTSELAALQKAA 235 >gi|254369050|ref|ZP_04985063.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022] gi|157121971|gb|EDO66141.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022] Length = 235 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 115/232 (49%), Positives = 161/232 (69%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R + +T +K+AEGS L++FGDT ++ TA++ VP + +++ GW+ Sbjct: 1 MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLI 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+QEIQR+IGRALR+ VDL+A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +++M+ + + L VAAIS G+ P++DLDY Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS + D N VM +G I+E+QG+AE FS++ F ML LAK I ++ Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232 >gi|296268927|ref|YP_003651559.1| ribonuclease PH [Thermobispora bispora DSM 43833] gi|296091714|gb|ADG87666.1| ribonuclease PH [Thermobispora bispora DSM 43833] Length = 247 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 117/242 (48%), Positives = 162/242 (66%), Gaps = 3/242 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 R GR+ +Q+R +++TR +AEGS LV+FG T +L AT+E VP W + + GW+T Sbjct: 3 RSDGRRPDQLRPVTITRNWLAHAEGSVLVEFGATKVLCAATVEAGNVPRWRKGSGLGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+TG R +RE+V G+ GGR+ EI R+IGRALR+ VD +G IIIDCDV+Q Sbjct: 63 AEYAMLPRATGTRSERESVKGKIGGRTHEISRLIGRALRACVDFKVMGENSIIIDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + M +N+ L L V+A+S G++ P++DL Y Sbjct: 123 ADGGTRTAAITGAFVALADAVAWMR--ANEVCLGDPLVNSVSAVSVGIVGSEPLLDLCYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N VMT +G VEVQG+AE A F +D A+L+LA A+L ++Q + + Sbjct: 181 EDVVAETDMNVVMTGAGAFVEVQGTAEGAPFGRDQLNALLDLATAGCAELARIQAEALGR 240 Query: 241 EV 242 ++ Sbjct: 241 DL 242 >gi|284029809|ref|YP_003379740.1| ribonuclease PH [Kribbella flavida DSM 17836] gi|283809102|gb|ADB30941.1| ribonuclease PH [Kribbella flavida DSM 17836] Length = 238 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 113/238 (47%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R ++LTR+ +AEGS LV+FG T +L A++ E VP W + + GW++A Sbjct: 3 RIDGRTPDQLRPVTLTRKWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVSA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYAMLPRSTNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTILLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + D K + L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVSFLRD--RKALKGEPLTGSVSAVSVGIIDGTPMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V+T G +EVQG+AE A F + ++L L +L KLQ++ ++ Sbjct: 181 DVRAETDMNLVLTGDGKFIEVQGTAEGAPFDRAELDSLLELGTAGCVELTKLQREALA 238 >gi|53802880|ref|YP_115411.1| ribonuclease PH [Methylococcus capsulatus str. Bath] gi|61215834|sp|Q602N9|RNPH_METCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|53756641|gb|AAU90932.1| ribonuclease PH [Methylococcus capsulatus str. Bath] Length = 243 Score = 342 bits (877), Expect = 4e-92, Method: Composition-based stats. Identities = 118/238 (49%), Positives = 168/238 (70%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +Q+R I+ T +K+AEGS LV+FGDT ++ TA++EE+VP +++ GWIT Sbjct: 1 MRPSGRRPDQLRRIAFTCNYTKHAEGSVLVEFGDTRVICTASVEERVPPFLKGKGSGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ ++L ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRATHERTGREAARGKQGGRTMEIQRLIGRSLRAALNLEALGERTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL +Q + ++ + + G +A++S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGGYVALVLAVQRL--LKSRKIKTNPVHGQIASVSVGICQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D N VM D+G +E+QG+AE F +D AML LA+ IADL+ Q++ + Sbjct: 179 EDCDAETDMNVVMNDAGAFIEIQGTAEGHAFRRDELDAMLRLAEAGIADLLLHQQEAL 236 >gi|303250534|ref|ZP_07336731.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251576|ref|ZP_07533483.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650522|gb|EFL80681.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861040|gb|EFM93046.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 238 Score = 342 bits (877), Expect = 4e-92, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL LG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKVLGERTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ ++ Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237 >gi|270157357|ref|ZP_06186014.1| ribonuclease PH [Legionella longbeachae D-4968] gi|289164250|ref|YP_003454388.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Legionella longbeachae NSW150] gi|269989382|gb|EEZ95636.1| ribonuclease PH [Legionella longbeachae D-4968] gi|288857423|emb|CBJ11251.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Legionella longbeachae NSW150] Length = 235 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 117/237 (49%), Positives = 161/237 (67%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ NQ+R I LTR +K+AEGS LV+FG T +L A++ E VP +I+ GW+T Sbjct: 1 MRPSNREANQLRPIQLTRNYTKHAEGSVLVEFGQTKVLCNASVTEGVPRFIKGKNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+QGGR+ EIQR+IGR+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTEREASKGKQGGRTMEIQRLIGRSLRACVDLKFLGENTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+ VA+ D + M + ++ ++AA+S G+ G ++DLDY Sbjct: 121 ADGGTRTAAITGSCVAMRDAISWMVEREKIRRM--PAFNYIAAVSVGLYRGQAVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED + D N VM ++GH +E+QG+AE F+++ ML LA+ I LI++QK Sbjct: 179 EDVLAETDMNVVMNEAGHFIEIQGTAEDRHFNREELNNMLALAEIGIPQLIEIQKKA 235 >gi|302871436|ref|YP_003840072.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47] gi|302574295|gb|ADL42086.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47] Length = 258 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEVLGQ 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|237741270|ref|ZP_04571751.1| ribonuclease ph [Fusobacterium sp. 4_1_13] gi|229430802|gb|EEO41014.1| ribonuclease ph [Fusobacterium sp. 4_1_13] Length = 434 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + D + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDKIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|255657266|ref|ZP_05402675.1| ribonuclease PH [Clostridium difficile QCD-23m63] gi|296451893|ref|ZP_06893610.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08] gi|296879712|ref|ZP_06903687.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07] gi|296259275|gb|EFH06153.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08] gi|296429301|gb|EFH15173.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07] Length = 449 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 114/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI A Sbjct: 3 RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA Sbjct: 63 EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y E Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTVKEMPITNFVSAISVGIVNGTHMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VD N +MTD VEVQG+ E FS+ +L L + +LI+LQK+ + Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRTDLNLLLELGEKGNKELIRLQKEALGE 239 >gi|239982007|ref|ZP_04704531.1| ribonuclease PH [Streptomyces albus J1074] gi|291453857|ref|ZP_06593247.1| ribonuclease PH [Streptomyces albus J1074] gi|291356806|gb|EFE83708.1| ribonuclease PH [Streptomyces albus J1074] Length = 241 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 153/239 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRTPAQLRPLTIERSWSKHAEGSVLVAFGDTKVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L G VAA+S G++ P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAISWAQGKKIIKPGRKPLTGSVAAVSVGIVGSTPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V T G VEVQG+AE A F + A+L+L ADL K Q ++ Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRTELDALLDLGATGCADLTKGQLAALAE 241 >gi|312882913|ref|ZP_07742645.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122] gi|309369432|gb|EFP96952.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122] Length = 238 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRLADQIRPIKMTRHYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREASSGKQGGRTLEIQRLIARSLRAVVDLEAMGEMMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFETLVKSGKL--KHNPMKGHVAAVSVGILGQDILCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE FS+ +L++A+ IAD++K QK + N Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFSRQELNVLLDVAEKGIADIVKAQKLALEN 238 >gi|153956061|ref|YP_001396826.1| ribonuclease PH [Clostridium kluyveri DSM 555] gi|219856397|ref|YP_002473519.1| hypothetical protein CKR_3054 [Clostridium kluyveri NBRC 12016] gi|189043757|sp|A5N2V9|RNPH_CLOK5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808584|sp|B9DWL2|RNPH_CLOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|146348919|gb|EDK35455.1| RpH [Clostridium kluyveri DSM 555] gi|219570121|dbj|BAH08105.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 248 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ NQ+R + +TR +KYAEGS L++ GDT ++ TA++E+KVP +++ GWIT Sbjct: 1 MRVDGRKCNQIRPVKITRNYTKYAEGSVLIENGDTKVICTASIEDKVPPFLKGRGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY M+PR+T R R+ GR GR+ EIQR+IGRALRSVVDL A+G + I +DCDVIQ Sbjct: 61 CEYNMIPRATQVRKARDINRGRIDGRTMEIQRIIGRALRSVVDLRAIGEKTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA+VAL D + + + ++ V+A+S G++ ++DL Y Sbjct: 121 ADGGTRTASISGAFVALVDAVNKLHKQNPFTIY--PIRDFVSAVSVGIVNDTRMLDLCYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMTDSG VE+QG+ E+ F+++ +L LA+ I +I QKD + Sbjct: 179 EDSRAKVDMNVVMTDSGEFVEIQGTGEQNPFTREDLKELLALAEKGIKSMISAQKDSLK 237 >gi|78049070|ref|YP_365245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927895|ref|ZP_08189119.1| RNAse PH [Xanthomonas perforans 91-118] gi|123584287|sp|Q3BPR8|RNPH_XANC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|78037500|emb|CAJ25245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541735|gb|EGD13253.1| RNAse PH [Xanthomonas perforans 91-118] Length = 241 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLIKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241 >gi|149927822|ref|ZP_01916073.1| ribonuclease PH [Limnobacter sp. MED105] gi|149823444|gb|EDM82675.1| ribonuclease PH [Limnobacter sp. MED105] Length = 243 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 123/237 (51%), Positives = 166/237 (70%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +R ISL R +K+AEGS +V+FGDTH+L T ++E+KVP +++ GW+TA Sbjct: 7 RPDGRNPRALRNISLERNYTKHAEGSVMVRFGDTHVLCTCSVEDKVPGFLKGKNQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VDL+ LG R + IDCDVIQA Sbjct: 67 EYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLNKLGERTLKIDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VA+ D + + +N +K VAA+S G++ G ++DL+Y E Sbjct: 127 DGGTRTASITGAMVAVADAIGKL--IANGALPENPIKQFVAAVSVGVVNGQVVLDLNYDE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DST + D N VMT+ G VEVQG+AE FS++ ML+ A I +L++LQK + Sbjct: 185 DSTCETDLNVVMTEKGGFVEVQGTAEGDAFSREELNGMLDSAAAGIIELVRLQKAAL 241 >gi|260770721|ref|ZP_05879651.1| ribonuclease PH [Vibrio furnissii CIP 102972] gi|260614302|gb|EEX39491.1| ribonuclease PH [Vibrio furnissii CIP 102972] gi|315178484|gb|ADT85398.1| ribonuclease PH [Vibrio furnissii NCTC 11218] Length = 238 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNNRAADQVRPIQITRHYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGELMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D + ++ +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFDKL--VADGKLKKNPMKGHVAAVSVGILGQDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD++ QK + N Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLDLLAVAKKGIADIVSAQKASLEN 238 >gi|290960058|ref|YP_003491240.1| ribonuclease [Streptomyces scabiei 87.22] gi|260649584|emb|CBG72699.1| putative ribonuclease [Streptomyces scabiei 87.22] Length = 245 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 114/237 (48%), Positives = 155/237 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +++ R SK+AEGS LV FGDT + TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q L G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D D N V T G VEVQG+AE F+++ ++L+LA +L LQ+ + Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELALLQRKAL 239 >gi|190149324|ref|YP_001967849.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307244856|ref|ZP_07526955.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253810|ref|ZP_07535664.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258266|ref|ZP_07540009.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262637|ref|ZP_07544267.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226736878|sp|B3GZP5|RNPH_ACTP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189914455|gb|ACE60707.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306854301|gb|EFM86507.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863294|gb|EFM95234.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867726|gb|EFM99571.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306872060|gb|EFN03774.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 238 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS LV+FG+T +L AT+EE VP +++ + GW+T Sbjct: 1 MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VALHD + + ++ +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G +VEVQG+AE FS +L+LA I L+ Q+ + Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALG 237 >gi|291485267|dbj|BAI86342.1| ribonuclease PH [Bacillus subtilis subsp. natto BEST195] Length = 245 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA++A+ + + + + +AAIS G+ ++DL+Y Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTSPITDFLAAISVGIDKEQGILLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +LI QK+V+ Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 Query: 240 NEV 242 + + Sbjct: 239 DSL 241 >gi|187933801|ref|YP_001884652.1| ribonuclease PH [Clostridium botulinum B str. Eklund 17B] gi|226736899|sp|B2TJ05|RNPH_CLOBB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|187721954|gb|ACD23175.1| tRNA nucleotidyltransferase [Clostridium botulinum B str. Eklund 17B] Length = 249 Score = 341 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 155/239 (64%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R + +TR +KYAEGS ++ GDT +L ++E+KVP +++ T GWIT Sbjct: 1 MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R R+ + GR+ EIQR+IGRALRSVVDL ALG + + IDCDVIQ Sbjct: 61 AEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT AI+GA++AL D + + ++ VAA+S G++ I+DL Y Sbjct: 121 ADGGTRTTAISGAFIALVDAVNKLHKIKPFKIY--PIRSFVAAVSVGIVNEEKILDLCYQ 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MTD G VEVQG+ E + +++ +L+L + I +I +QK+ + Sbjct: 179 EDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRAELNELLDLGEKGIKQMINVQKESLK 237 >gi|114769782|ref|ZP_01447392.1| ribonuclease PH [alpha proteobacterium HTCC2255] gi|114549487|gb|EAU52369.1| ribonuclease PH [alpha proteobacterium HTCC2255] Length = 237 Score = 341 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 133/239 (55%), Positives = 172/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + MR I + +K+AEGSCL+K GDTH+L TA++E++ P W+RNT GW+T Sbjct: 1 MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVEDRTPPWLRNTGMGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R +REA SG+Q GR+QEIQR+IGR+LR+ +D LG RQI +DCDV+Q Sbjct: 61 AEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG W+AL + M + L HVAA+SCG+ G PI+DLDY Sbjct: 121 ADGGTRCASITGGWIALRLAINAMIKAGDL--KEDPLTEHVAAVSCGIYGGQPILDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT S +VE+QGSAE ATF + F ++++LA+ I++LI QK IS Sbjct: 179 EDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQKAAIS 237 >gi|253991850|ref|YP_003043206.1| ribonuclease PH [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783300|emb|CAQ86465.1| ribonuclease ph [Photorhabdus asymbiotica] Length = 237 Score = 341 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R I++TR +K+AEGS LV+FGDT +L A++EE VP +++ GWIT Sbjct: 1 MRPAGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M + LK VAA+S G++ DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNKMVEAGKL--KENPLKSMVAAVSVGIVDNEGRCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS D ++L+LAK + + Q+ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLSLAKGGLETIFAAQRTALK 237 >gi|166713272|ref|ZP_02244479.1| ribonuclease PH [Xanthomonas oryzae pv. oryzicola BLS256] Length = 241 Score = 341 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT AITGA+VAL D + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTTAITGAYVALADAVNLLLKRGEIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241 >gi|90407865|ref|ZP_01216041.1| putative ribonuclease PH [Psychromonas sp. CNPT3] gi|90311040|gb|EAS39149.1| putative ribonuclease PH [Psychromonas sp. CNPT3] Length = 239 Score = 341 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 118/241 (48%), Positives = 155/241 (64%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q REI +TR + YAEGS L++ G+T +L A++ + VP +++ GW+T Sbjct: 1 MRPSKRTPEQNREIKITRNFTDYAEGSVLIEIGNTKVLCNASVSDSVPRFLKGKGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA G+QGGR+ EIQR+I R+LR+ VDL A G I +DCDVIQ Sbjct: 61 AEYAMLPRATHTRNQREAAKGKQGGRTLEIQRLIARSLRAAVDLDAFGENMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +AL D L M + LK +AA+S G+ P+ DLDY Sbjct: 121 ADGGTRTASITGACIALADALNWMVKEGKIKK--SPLKQMIAAVSVGIYKDTPVCDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D N VMT+ G ++E+QG+AE FS + AML+LAK I LI QK ++ Sbjct: 179 EDSNAQTDMNVVMTEDGGMIEIQGTAEDGAFSHEQLLAMLSLAKGGIDKLIVEQKKALTG 238 Query: 241 E 241 E Sbjct: 239 E 239 >gi|239622472|ref|ZP_04665503.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486] gi|61216065|sp|Q8G7I0|RNPH_BIFLO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|239514469|gb|EEQ54336.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 248 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 8 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 68 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 128 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 187 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 188 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 246 >gi|92115321|ref|YP_575249.1| ribonuclease PH [Chromohalobacter salexigens DSM 3043] gi|91798411|gb|ABE60550.1| RNAse PH [Chromohalobacter salexigens DSM 3043] Length = 245 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 126/239 (52%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q REI+L R +++AEGS LV FGDT +L A++E VP W+R + GWIT Sbjct: 6 MRPSGRQPDQPREITLERGYTRHAEGSVLVSFGDTKVLCNASVEAGVPRWLRGKQQGWIT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+VVDL LG I +DCDVIQ Sbjct: 66 AEYGMLPRATHTRGGREATRGKQGGRTLEIQRLIGRSLRTVVDLKKLGEFTITVDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG VAL D + H++ K K V+++S G+ G P+VDLDY Sbjct: 126 ADGGTRTASITGGCVALVDAIHHLQR--EKLIKKDPFKQLVSSVSVGIFKGQPVVDLDYP 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D N VM + G ++EVQG+AE ATF++ AML+LA+ L Q++ + Sbjct: 184 EDSTAGTDMNVVMAEDGGLIEVQGTAETATFTRQELNAMLDLAEGAGRQLFAHQREALG 242 >gi|256846413|ref|ZP_05551870.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2] gi|256718182|gb|EEU31738.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2] Length = 434 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + D + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDKIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|148251804|ref|YP_001236389.1| ribonuclease PH [Bradyrhizobium sp. BTAi1] gi|166228266|sp|A5E8I9|RNPH_BRASB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|146403977|gb|ABQ32483.1| RNAse PH [Bradyrhizobium sp. BTAi1] Length = 237 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 137/239 (57%), Positives = 183/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GWIT Sbjct: 1 MRPSRRAPDELRPVSLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR+ +DL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC++ M+ + ++VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCIKWMK--TRNMLKTEVLRANVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G I+EVQG+AE+ F++ F A++ LA+ +A L+ LQK ++ Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFTEAEFLALMALARKGVARLVDLQKMAVA 237 >gi|91974875|ref|YP_567534.1| ribonuclease PH [Rhodopseudomonas palustris BisB5] gi|123735818|sp|Q13E56|RNPH_RHOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91681331|gb|ABE37633.1| RNAse PH [Rhodopseudomonas palustris BisB5] Length = 237 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 141/239 (58%), Positives = 181/239 (75%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRAIVDLQALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCL M+ + VL+ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLGWMK--TRNMIKGTVLRDNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G I+EVQG+AE+ FSQD F A++ LA+ + L+ LQK ++ Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVTRLVDLQKMAVA 237 >gi|319786148|ref|YP_004145623.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1] gi|317464660|gb|ADV26392.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1] Length = 241 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR +Q+R + + R +++AEGS LV FGDT +L TA+++ KVP ++R GW+T Sbjct: 4 VRPSGRAPDQLRPVRIERGFTRHAEGSVLVSFGDTRVLCTASIDNKVPAFLRGKGEGWVT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+IGR LR+ +D ALG R I +DCDV+Q Sbjct: 64 AEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRTLRACIDRGALGERTITLDCDVLQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D ++ ++ + G VAA+S G+ G P++DLDY Sbjct: 124 ADGGTRTAAITGAYVALVDAVRWLQ--GRGEIKRDPVFGAVAAVSVGVYRGVPVLDLDYA 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VM D G +E+QG+AE F +D A+L LA+ I L++LQ+ ++ Sbjct: 182 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLALAETGIGQLLELQRQALAG 241 >gi|237813382|ref|YP_002897833.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346] gi|237506567|gb|ACQ98885.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346] Length = 243 Score = 341 bits (875), Expect = 6e-92, Method: Composition-based stats. Identities = 125/239 (52%), Positives = 172/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T Sbjct: 6 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ Sbjct: 66 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDYG Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGVFGGTPVLDLDYG 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ + Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 242 >gi|188588196|ref|YP_001919836.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43] gi|251780372|ref|ZP_04823292.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226736898|sp|B2UZ31|RNPH_CLOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|188498477|gb|ACD51613.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43] gi|243084687|gb|EES50577.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 249 Score = 341 bits (875), Expect = 6e-92, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 155/239 (64%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R + +TR +KYAEGS ++ GDT +L ++E+KVP +++ T GWIT Sbjct: 1 MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R R+ + GR+ EIQR+IGRALRSVVDL ALG + + IDCDVIQ Sbjct: 61 AEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT AI+GA++AL D + + ++ VAA+S G++ I+DL Y Sbjct: 121 ADGGTRTTAISGAFIALVDAVNKLHKIKPFKIY--PIRSFVAAVSVGIVNEEKILDLCYQ 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MTD G VEVQG+ E + +++ +L+L + I +I +QK+ + Sbjct: 179 EDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRTELNELLDLGEKGIKQMINVQKESLK 237 >gi|118594148|ref|ZP_01551495.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181] gi|118439926|gb|EAV46553.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181] Length = 240 Score = 341 bits (875), Expect = 6e-92, Method: Composition-based stats. Identities = 118/241 (48%), Positives = 164/241 (68%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R I R +K+AEGS LVK GDTH++ A++EE VP +++ GW+T Sbjct: 1 MRASNRNADELRPIEFIRSYTKHAEGSVLVKCGDTHVICNASIEENVPSFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ RE+ G+Q GR+QEIQR+IGR+LR+++DL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRSTSSRMGRESSRGKQSGRTQEIQRLIGRSLRAIIDLKKLGERTIFIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G++VALHD ++ + SNK + +AAIS G+ ++DLDY Sbjct: 121 ADGGTRTASISGSYVALHDAIEFL--LSNKKITESPIIDSIAAISAGIKGADILLDLDYS 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D NFVMT G VE+QG+AE F++D + N+A I +I +Q + + Sbjct: 179 EDSECDTDMNFVMTGKGSFVEIQGTAEGIPFTKDEMDQLTNVASKGIQSIINIQSEALDK 238 Query: 241 E 241 + Sbjct: 239 K 239 >gi|170742381|ref|YP_001771036.1| ribonuclease PH [Methylobacterium sp. 4-46] gi|226736918|sp|B0UP55|RNPH_METS4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|168196655|gb|ACA18602.1| ribonuclease PH [Methylobacterium sp. 4-46] Length = 237 Score = 341 bits (875), Expect = 6e-92, Method: Composition-based stats. Identities = 134/239 (56%), Positives = 177/239 (74%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R+++L + V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAPDELRKVTLEKGVARYAEGSCLVTFGETKVLCTASLEERGPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE +G+ GR+QEIQR+IGR+LR+VV+L A+G RQI++DCDV+Q Sbjct: 61 AEYAMLPRATHERNRREVTAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALH+C M ++ HVAAISCG+ G PI+DLDY Sbjct: 121 ADGGTRTASITGAWVALHECFTWMR--GRSIISVDPMRDHVAAISCGIHKGIPILDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFV+T SG IVEVQG+AE A FS++ F +L LAK +A L+ LQK + Sbjct: 179 EDSAADTDANFVITGSGGIVEVQGTAEIAPFSEEQFLGLLRLAKAGVAQLVALQKQAVG 237 >gi|145628603|ref|ZP_01784403.1| ribonuclease PH [Haemophilus influenzae 22.1-21] gi|144979073|gb|EDJ88759.1| ribonuclease PH [Haemophilus influenzae 22.1-21] Length = 238 Score = 341 bits (875), Expect = 6e-92, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ R+I +TR +K+AEGS LV+FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N + +KG V+AIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+A FS + +L+LAK + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAGSEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237 >gi|310657898|ref|YP_003935619.1| nucleoside-triphosphatase [Clostridium sticklandii DSM 519] gi|308824676|emb|CBH20714.1| Nucleoside-triphosphatase [Clostridium sticklandii] Length = 443 Score = 341 bits (875), Expect = 6e-92, Method: Composition-based stats. Identities = 117/234 (50%), Positives = 164/234 (70%), Gaps = 2/234 (0%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68 N +REI +T+ +KYAEGS L++FGDT +L A++EEKVP +++NT GWI+AEY MLPR Sbjct: 6 NMLREIKITKNFTKYAEGSVLIEFGDTVVLCNASIEEKVPPFLKNTGTGWISAEYSMLPR 65 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 ST R R++ G+ GR+ EIQR+IGRALRSVVD+ LG R I IDCDV+QADGGTRTA Sbjct: 66 STHQRKIRDSARGKIDGRTHEIQRLIGRALRSVVDMKVLGERTIWIDCDVLQADGGTRTA 125 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 +ITGA+VAL D + + + + S + V+A+S G++ G P++DL Y EDS+ +VD Sbjct: 126 SITGAFVALCDAMAKLYE--KEAIKSFPINAFVSAVSVGIVKGKPVLDLCYEEDSSAEVD 183 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N VMTD G +EVQG+ E+ FS++ +L+LA+ L+K+Q+ I + Sbjct: 184 MNVVMTDKGEFIEVQGTGEQHPFSKNQLMQLLDLAQQGNEQLMKIQRRAIGEPI 237 >gi|117923369|ref|YP_863986.1| ribonuclease PH [Magnetococcus sp. MC-1] gi|117607125|gb|ABK42580.1| RNAse PH [Magnetococcus sp. MC-1] Length = 243 Score = 341 bits (875), Expect = 6e-92, Method: Composition-based stats. Identities = 131/240 (54%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+SGR+ ++MR +++TR +K+AEGSCL+ FGDT +L TAT+EE P W+RN GW+T Sbjct: 5 LRISGRRPDEMRAVTITRHYTKHAEGSCLIAFGDTQVLCTATVEESQPRWMRNEDRGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+ EIQR+IGRA+R+VVDL ALG R I +DCDVIQ Sbjct: 65 AEYGMLPRSTNVRMGREAAKGKQSGRTLEIQRLIGRAMRAVVDLQALGKRTIWLDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+HD + + L+ HVAA+SCGM+ G P +DLDY Sbjct: 125 ADGGTRTASITGAFVAMHDAVTGLLKAG--LIRHNPLRDHVAAVSCGMVAGMPALDLDYQ 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D NFVMT +G VE+QG+AE F++ F +M LA I L++ QK + Sbjct: 183 EDSRCDTDMNFVMTGAGGFVEIQGTAEGVPFTRPEFESMAALADQGIKALVQAQKLALLK 242 >gi|161170278|gb|ABX59248.1| RNase PH [uncultured marine bacterium EB000_55B11] gi|297183806|gb|ADI19929.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 252 Score = 340 bits (874), Expect = 7e-92, Method: Composition-based stats. Identities = 132/239 (55%), Positives = 171/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + MR I + +K+AEGSCL+K GDTH+L TA++ ++ P W+RNT GW+T Sbjct: 16 MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVXDRTPPWLRNTGMGWVT 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R +REA SG+Q GR+QEIQR+IGR+LR+ +D LG RQI +DCDV+Q Sbjct: 76 AEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQ 135 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG W+AL + M + L HVAA+SCG+ G PI+DLDY Sbjct: 136 ADGGTRCASITGGWIALRLAINAMIKAGDL--KEDPLTEHVAAVSCGIYGGQPILDLDYA 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT S +VE+QGSAE ATF + F ++++LA+ I++LI QK IS Sbjct: 194 EDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQKAAIS 252 >gi|89900419|ref|YP_522890.1| ribonuclease PH [Rhodoferax ferrireducens T118] gi|89345156|gb|ABD69359.1| RNAse PH [Rhodoferax ferrireducens T118] Length = 243 Score = 340 bits (874), Expect = 7e-92, Method: Composition-based stats. Identities = 126/241 (52%), Positives = 169/241 (70%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R NQ+R + + R + +AEGS L++FG+T +L TA++EEKVP + + GW+T Sbjct: 5 LRVGARAANQLRAVKIQRGYTMHAEGSVLIEFGNTKVLCTASVEEKVPAHKKGSGQGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+QEIQR+IGRALRSV DLS LG R I +DCDV+Q Sbjct: 65 AEYGMLPRATHSRNEREAARGKQSGRTQEIQRLIGRALRSVFDLSLLGERTIHLDCDVLQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA D + + ++ HVAAIS G++ G P++DL+Y Sbjct: 125 ADGGTRTAAITGAFVAAQDAVTQLLMQGKLQL--SPIRDHVAAISVGIVDGTPLLDLEYT 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT +G VEVQG+AE A FS+ A+L LA+ I+DL+ LQK + N Sbjct: 183 EDSACDTDMNVVMTGAGQFVEVQGTAEGAAFSRREMDALLALAEQGISDLVALQKISLLN 242 Query: 241 E 241 + Sbjct: 243 K 243 >gi|326559598|gb|EGE10012.1| ribonuclease PH [Moraxella catarrhalis 7169] gi|326567722|gb|EGE17828.1| ribonuclease PH [Moraxella catarrhalis BC1] Length = 238 Score = 340 bits (874), Expect = 8e-92, Method: Composition-based stats. Identities = 126/239 (52%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ N++R I R+ +K+AEGS LV FGDT +L TA++E VP W++ GW+T Sbjct: 1 MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R +REA G+Q GR+QEIQR+IGR+LR+++DLS LG I IDCDVIQ Sbjct: 61 AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L+H++ K L G VAA+S G+ G ++DLDY Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQR--RKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D D N VM +G +E+QG+AE F++ AML+LA+ I +I+ QK V+ Sbjct: 179 EDSTCDTDLNVVMMQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVLG 237 >gi|148927584|ref|ZP_01811056.1| ribonuclease PH [candidate division TM7 genomosp. GTL1] gi|147887071|gb|EDK72567.1| ribonuclease PH [candidate division TM7 genomosp. GTL1] Length = 244 Score = 340 bits (874), Expect = 8e-92, Method: Composition-based stats. Identities = 126/236 (53%), Positives = 171/236 (72%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL+ R N++REI++TR+ +K+AEGS LV FGDT ++ TA++ VP ++++ GW+T Sbjct: 6 MRLANRANNKLREINITRKFTKHAEGSVLVTFGDTKVICTASVTNGVPPFLKDKGQGWVT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA G+Q GR+QEIQR+I R+LR+ VDL+A+G I IDCDVIQ Sbjct: 66 AEYGMLPRSTHERMQREAAKGKQVGRTQEIQRLIARSLRAAVDLTAMGENTITIDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG VALHD LQ++ + K + + VA++S G++ G P++DLDY Sbjct: 126 ADGGTRTAAITGGCVALHDALQYLTE--KKQLATNPFQQFVASVSVGIINGEPMLDLDYQ 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS D D N VMT+ G +EVQG+AE+ F Q A+L+LAK I +L K+QK Sbjct: 184 EDSNADTDMNVVMTEQGGFIEVQGTAEKTVFQQSELDALLHLAKQGITELTKMQKQ 239 >gi|241767033|ref|ZP_04764818.1| ribonuclease PH [Acidovorax delafieldii 2AN] gi|241362436|gb|EER58380.1| ribonuclease PH [Acidovorax delafieldii 2AN] Length = 243 Score = 340 bits (874), Expect = 8e-92, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TRR + +AEGS L++FG+T +L TA++E+KVP R T GW+T+ Sbjct: 6 RSGGRAADQLRPVRITRRYTMHAEGSVLIEFGNTQVLCTASVEDKVPPHQRGTGEGWVTS 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R I +DCDVIQA Sbjct: 66 EYGMLPRATHKRSDREAAKGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTIQLDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA D + + ++ + ++G VAAIS G++ G P++DL+Y E Sbjct: 126 DGGTRTAAITGAWVAAQDAVNQL--LASGKITASPIRGSVAAISVGIVQGTPLLDLEYAE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D D N VMT +GH VEVQG+AE A F++ +L LA+ IA+L+ LQ+ + + Sbjct: 184 DVGCDTDMNVVMTGAGHFVEVQGTAEGAAFTRAEMDQLLGLAEKGIAELVALQQQSLLKQ 243 >gi|292490867|ref|YP_003526306.1| ribonuclease PH [Nitrosococcus halophilus Nc4] gi|291579462|gb|ADE13919.1| ribonuclease PH [Nitrosococcus halophilus Nc4] Length = 239 Score = 340 bits (874), Expect = 8e-92, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +++R I LTR +KYAEGS LV+FGDT ++ TA++E++VP +++ GW+T Sbjct: 1 MRPSGRAPDELRPIRLTRHYTKYAEGSVLVEFGDTRVICTASVEDRVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA GRQGGR+ EIQR+IGR+LR++VDLSALG + IDCDVIQ Sbjct: 61 AEYGMLPRSTNIRMGREAAQGRQGGRTMEIQRLIGRSLRAIVDLSALGEITVTIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + + + G VA++S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAYVALVDAVGSL--LKKRVIAHSPIHGQVASVSVGICEGRPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST + D N +M ++G +E+QG+AE F + AML LAK I L+ Q + ++ Sbjct: 179 EDSTAETDMNVIMNEAGGFIEIQGTAEGHAFRMNELQAMLELAKSGIGTLLAKQTEALAK 238 >gi|289422671|ref|ZP_06424511.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L] gi|289156850|gb|EFD05475.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L] Length = 475 Score = 340 bits (874), Expect = 8e-92, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R++ +TR +KY+ GS L++ G+T ++ TA++EE VP +++ GWITA Sbjct: 26 RPDGRSLDQIRDVKITRNYTKYSAGSVLIEVGNTKVICTASIEEGVPHFMKGAGSGWITA 85 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R KR++ G+ GRSQEIQR+IGR++RSVVD+ ALG R I IDCDVIQA Sbjct: 86 EYSMLPSATESRKKRDSSKGKVDGRSQEIQRLIGRSIRSVVDMEALGERTIWIDCDVIQA 145 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L + ++ +K +AAIS G++ +D+ Y E Sbjct: 146 DGGTRTASITGAYVALADALYKLYKSGQIKKM--PVKNLLAAISIGIIDDEVRLDICYEE 203 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VD N VM + G +E+QG+ E F++D +L LA+ DL++LQ+ + Sbjct: 204 DSKAMVDTNVVMNNRGEFIEIQGTGEERPFTRDELSRILELAEKGNRDLMRLQRQALGE 262 >gi|206889521|ref|YP_002249186.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347] gi|226736948|sp|B5YFY8|RNPH_THEYD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|206741459|gb|ACI20516.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347] Length = 236 Score = 340 bits (874), Expect = 8e-92, Method: Composition-based stats. Identities = 113/233 (48%), Positives = 163/233 (69%), Gaps = 2/233 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +++R I + + K A+GS L++ G+T ++ TA++E KVP ++++ K GWIT Sbjct: 1 MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTASIENKVPPFLKDQKKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ RE+ SGR GGR+ EIQR+IGR LR+VVDL LG R I IDCDVI+ Sbjct: 61 AEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDCDVIE 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++AL + ++ + +K +AAIS G++ G P +DL Y Sbjct: 121 ADGGTRTASITGGYIALVEAVKKAMNAG--MITENPIKDSIAAISVGIVLGEPRLDLCYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS +VD N VMT SG +E+QG+AE FS+++ +L+LA+ I ++I++ Sbjct: 179 EDSQAEVDMNIVMTGSGKFIEIQGTAEIYPFSKENLLQLLSLAEKGIREIIRV 231 >gi|86747551|ref|YP_484047.1| ribonuclease PH [Rhodopseudomonas palustris HaA2] gi|123099251|sp|Q2J324|RNPH_RHOP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|86570579|gb|ABD05136.1| RNAse PH [Rhodopseudomonas palustris HaA2] Length = 237 Score = 340 bits (874), Expect = 8e-92, Method: Composition-based stats. Identities = 143/239 (59%), Positives = 183/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRTIVDLQALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DCL M+ + QV++ +VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCLAWMK--TRNMLKGQVMRDNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G IVEVQG+AE+ FSQD F A++ LA+ +A L+ LQK ++ Sbjct: 179 EDSEAETDANFVMTGDGRIVEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQKMAVA 237 >gi|25028957|ref|NP_739011.1| ribonuclease PH [Corynebacterium efficiens YS-314] gi|259508022|ref|ZP_05750922.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314] gi|61216064|sp|Q8FMU8|RNPH_COREF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|23494244|dbj|BAC19211.1| putative ribonuclease [Corynebacterium efficiens YS-314] gi|259164363|gb|EEW48917.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314] Length = 245 Score = 340 bits (874), Expect = 8e-92, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 157/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++QMR + +TR + GS L++FG+T ++ TA++E VP + R++ GW+TA Sbjct: 9 RADGRAQDQMRTVKITRGFTTNPAGSVLIEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE+++G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA Sbjct: 69 EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ +++ L VAA+S G++ G P +DL Y E Sbjct: 129 DGGTRTAAITGAYVALADAIRVLKE--QGVVPGDPLLPPVAAVSVGLIDGQPCLDLPYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D DVD N VMT+SG VE+QG+ E TF++ ML++A+ +L+ QK + Sbjct: 187 DVRADVDMNVVMTESGEFVEIQGTGEETTFTRAQLNEMLDIAEKGCRELVHAQKAALG 244 >gi|295706788|ref|YP_003599863.1| ribonuclease PH [Bacillus megaterium DSM 319] gi|294804447|gb|ADF41513.1| ribonuclease PH [Bacillus megaterium DSM 319] Length = 248 Score = 340 bits (873), Expect = 9e-92, Method: Composition-based stats. Identities = 113/238 (47%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL GR+ N++R +SL K+ EGS L+ GDT ++ TA+++++VP ++R GWIT Sbjct: 1 MRLDGREFNELRSVSLHTSYLKHPEGSVLISVGDTKVICTASIDDRVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL +G + I IDCDVIQ Sbjct: 61 AEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ + + + ++ ++ ++AA S G+ I+DL+Y Sbjct: 121 ADGGTRTASITGAFVAMVLAFGKLVEENKLTEI--PIRDYLAATSVGIHGENSILDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST +VD N VMT SG VE+QG+ E +TFS++ +L+L + + LI+ QK+V+ Sbjct: 179 EDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEVL 236 >gi|126700927|ref|YP_001089824.1| ribonuclease PH [Clostridium difficile 630] gi|115252364|emb|CAJ70205.1| Bifunctional enzyme, tRNA nucleotidyltransferase ; Nucleoside-triphosphatase [Clostridium difficile] Length = 449 Score = 340 bits (873), Expect = 9e-92, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI A Sbjct: 3 RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA Sbjct: 63 EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y E Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ + Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239 >gi|34763588|ref|ZP_00144521.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886731|gb|EAA23871.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 434 Score = 340 bits (873), Expect = 9e-92, Method: Composition-based stats. Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ ++ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRKFDEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + D + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I I+LQ +I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|255308380|ref|ZP_05352551.1| ribonuclease PH [Clostridium difficile ATCC 43255] Length = 449 Score = 340 bits (873), Expect = 9e-92, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI A Sbjct: 3 RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA Sbjct: 63 EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y E Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ + Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239 >gi|145589263|ref|YP_001155860.1| ribonuclease PH [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047669|gb|ABP34296.1| RNAse PH [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 246 Score = 340 bits (873), Expect = 9e-92, Method: Composition-based stats. Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR+ +R ++++R +K+AEGS L+ FGDT +L TA++ +KVP R + GW+TA Sbjct: 11 RPSGRKPKDLRPVTISRAFTKHAEGSVLIAFGDTKVLCTASILDKVPPHKRGSGEGWVTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGRA+RSV +L LG R I +DCDV+QA Sbjct: 71 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFNLKTLGERTIHLDCDVLQA 130 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA D + + Q + VAAIS G+ G P++DLDY E Sbjct: 131 DGGTRTASITGAYVAARDAVNQLLKSGALTQ--DPIIDSVAAISVGIYQGAPVLDLDYPE 188 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS+ D D N VMT G ++EVQG+AE A FS+ A+L+LA+ I +L +LQ D + Sbjct: 189 DSSCDTDMNVVMTGKGGMIEVQGTAEGAAFSRAELNALLDLAEQGIQELTQLQIDSLK 246 >gi|85060191|ref|YP_455893.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans'] gi|123518740|sp|Q2NQT7|RNPH_SODGM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|84780711|dbj|BAE75488.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans'] Length = 239 Score = 340 bits (873), Expect = 9e-92, Method: Composition-based stats. Identities = 120/238 (50%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R +++TR +++AEGS L+ FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSVQQVRPVTITRHFTRHAEGSVLIAFGDTRVLCTASVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLTKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M+ + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALSSMQKKGQL--KTNPMKGFVAAISVGIVAGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VM + G ++EVQG+AE FSQ +L LA+ I L++ QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSQQELNTLLELARGGIDSLVQAQKAAL 236 >gi|325981263|ref|YP_004293665.1| ribonuclease PH [Nitrosomonas sp. AL212] gi|325530782|gb|ADZ25503.1| ribonuclease PH [Nitrosomonas sp. AL212] Length = 240 Score = 340 bits (873), Expect = 9e-92, Method: Composition-based stats. Identities = 117/241 (48%), Positives = 166/241 (68%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R Q+R +++ R +K+A+GS L++ GDT ++ TA++ E+VP ++R GW+T Sbjct: 2 IRSHQRTPAQIRPVNIIRHYTKHADGSVLIECGDTKVICTASISEQVPPFLRGQGQGWLT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R++REA G+Q GR+ EIQR+IGRALR+ VDL LG R I +DCDVIQ Sbjct: 62 AEYGMLPGSTNTRMQREAAKGKQSGRTMEIQRLIGRALRAAVDLKKLGERTIQLDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VALHD ++ + + + + HVAAIS G+ G ++DLDY Sbjct: 122 ADGGTRTASITGAFVALHDAIEKL--IYQQLIETSPITDHVAAISVGIHQGVAMLDLDYV 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ D D N VMT + I+EVQG+AE F++ ML+LA+ I +LI +Q+ V+ Sbjct: 180 EDSSCDTDMNVVMTGNLGIIEVQGTAEGNAFNRKELDTMLDLAQQGIQELITIQRKVLLA 239 Query: 241 E 241 + Sbjct: 240 K 240 >gi|311896220|dbj|BAJ28628.1| putative ribonuclease PH [Kitasatospora setae KM-6054] Length = 241 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 111/238 (46%), Positives = 156/238 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +++ R SK+AEGS LV +GDT +L TA++ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVTIERNWSKHAEGSVLVSYGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+V+D AL I++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDHRALAENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q + G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALVDAVSWAREKKLLRAKGQPITGGVSAVSVGIIDGVPMLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V T G VEVQG+AE A F +D +L+L A+L ++Q+ + Sbjct: 183 DVRAETDMNIVCTSDGRFVEVQGTAEGAPFDRDLLNQLLDLGSLGCAELDEIQRKALE 240 >gi|227494822|ref|ZP_03925138.1| ribonuclease PH [Actinomyces coleocanis DSM 15436] gi|226831274|gb|EEH63657.1| ribonuclease PH [Actinomyces coleocanis DSM 15436] Length = 246 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 115/242 (47%), Positives = 160/242 (66%), Gaps = 3/242 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R + +TR AEGSCL++FG+T +L A+L E VP W + + GW+TA Sbjct: 5 RADGRANNQLRPVKITRNWIANAEGSCLIEFGNTRVLCVASLTEGVPRWRQGSGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+V G+ GGR+ EI R+IGR+LR+VVD ++LG I++DCDV+QA Sbjct: 65 EYSMLPRATSQRSQRESVKGKIGGRTHEISRLIGRSLRAVVDTASLGENTIVLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS---QVLKGHVAAISCGMLCGYPIVDLD 178 DGGTRTA+ITGA+VAL D ++ + +VLK VAAIS G++ G P +DL Sbjct: 125 DGGTRTASITGAYVALADAIKWGQKNGLIPLDKAHQKVLKDSVAAISVGIIDGEPRLDLP 184 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y ED + D N V+T SG +EVQG+AE A F++ A+L+LA+ +L Q+ + Sbjct: 185 YEEDVRAETDMNVVVTGSGEFIEVQGTAEHAPFTRAELGALLDLAEGGCKELAVFQEVAL 244 Query: 239 SN 240 S Sbjct: 245 SE 246 >gi|317482025|ref|ZP_07941050.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA] gi|322688513|ref|YP_004208247.1| ribonuclease PH [Bifidobacterium longum subsp. infantis 157F] gi|322690521|ref|YP_004220091.1| ribonuclease PH [Bifidobacterium longum subsp. longum JCM 1217] gi|316916592|gb|EFV37989.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA] gi|320455377|dbj|BAJ65999.1| putative ribonuclease PH [Bifidobacterium longum subsp. longum JCM 1217] gi|320459849|dbj|BAJ70469.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis 157F] Length = 254 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 14 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 252 >gi|90023323|ref|YP_529150.1| ribonuclease PH [Saccharophagus degradans 2-40] gi|123395477|sp|Q21EE1|RNPH_SACD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|89952923|gb|ABD82938.1| RNAse PH [Saccharophagus degradans 2-40] Length = 239 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR Q+R++++TR+ +++AEGS LV FGDT ++ TA++E VP +++ GWITA Sbjct: 3 RPSGRAPEQLRDVTITRQFTRHAEGSVLVCFGDTKVICTASVEAGVPRFLKGQGQGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL+ALG I+IDCDVIQA Sbjct: 63 EYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSIVIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D +++++ K + L VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGALVALVDAIRYLQR--EKMITTDPLVHMVAAVSVGIYEGVPVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMT+ G ++E+QG+AE+ F+ + F M +LAK +A+L+ LQK ++ Sbjct: 181 DSNAETDMNMVMTEEGGLIEIQGTAEKKPFTDEQFAGMFSLAKKGVAELVALQKAALAQ 239 >gi|289668014|ref|ZP_06489089.1| ribonuclease PH [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 241 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VM D G +E+QG+AE F +D A+L LA+ + L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQRAALAG 241 >gi|289662153|ref|ZP_06483734.1| ribonuclease PH [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 240 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 122/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R + + R +++AEGS LV FGDT +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM D G +E+QG+AE F +D A+L LA+ + L LQ+ ++ Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQRAALA 240 >gi|85714061|ref|ZP_01045050.1| ribonuclease PH [Nitrobacter sp. Nb-311A] gi|85699187|gb|EAQ37055.1| ribonuclease PH [Nitrobacter sp. Nb-311A] Length = 237 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 143/239 (59%), Positives = 183/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++ GW+T Sbjct: 1 MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+QGGR+ EIQR+IGR+LR+ +DL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAIDLEALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC+ M+ + + VL+G+VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARDMLKASVLRGNVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFVMT G I+EVQG+AE+ FS D F A++ LAK +A L+ LQK ++ Sbjct: 179 EDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237 >gi|310826563|ref|YP_003958920.1| ribonuclease PH [Eubacterium limosum KIST612] gi|308738297|gb|ADO35957.1| ribonuclease PH [Eubacterium limosum KIST612] Length = 240 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R +S+TR ++ A+G+ L++ G+T ++ TA +E+KVP ++R K GW+TA Sbjct: 3 RIDGRSNECLRPVSITRHFTRNAQGAVLIEVGNTKVICTAMVEDKVPPFLRGEKKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP STG+R R+ G+ GR+ EIQR+IGR+LRSV+D+ LG R I IDCDVIQA Sbjct: 63 EYEMLPSSTGSRKGRDRSRGKIDGRTVEIQRLIGRSLRSVIDMEKLGERTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL+D + + + + + G+VAA S G+ PI+DL Y E Sbjct: 123 DGGTRTASITGAFVALYDAVTWLME--EEIIDEWPINGYVAATSVGINQNEPIMDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DST +VD N VMTD G IVE+QG+ E F++D F +L L +D + LI +QK+ + Sbjct: 181 DSTAEVDMNIVMTDEGEIVEIQGTGEERPFTRDEFQKLLALGEDGVYQLINIQKEALGT 239 >gi|323701932|ref|ZP_08113601.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574] gi|323533018|gb|EGB22888.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574] Length = 250 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 117/241 (48%), Positives = 167/241 (69%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R + +T +KYAEGS L++ GDT ++ TAT+E++VP +++ GW+TA Sbjct: 3 RVDGRTPGQIRPVKITANYNKYAEGSVLIEIGDTRVICTATVEDRVPPFLKGLGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+TG R REA G+ GR+ EIQR+IGRALRSVVDL ALG R + +DCDVIQA Sbjct: 63 EYSMIPRATGTRTTREAAKGKLSGRTMEIQRLIGRALRSVVDLEALGERMVTMDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT++ITGA+VA+ L + + ++ + +AA S G++ G P++DL Y E Sbjct: 123 DGGTRTSSITGAYVAMILALNKLVEQGMLEKI--PVNDFIAATSVGIVNGTPVLDLCYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V+T +G VE+QG+ E ATFS+D +L+LA I +LIK+Q+ V+ E Sbjct: 181 DSAAEVDMNVVLTGTGRFVEIQGTGEEATFSRDEMNQLLDLAAAGIKELIKVQQQVLGPE 240 Query: 242 V 242 + Sbjct: 241 I 241 >gi|320457392|dbj|BAJ68013.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 254 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 14 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 252 >gi|255102475|ref|ZP_05331452.1| ribonuclease PH [Clostridium difficile QCD-63q42] Length = 449 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI A Sbjct: 3 RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA Sbjct: 63 EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y E Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ + Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239 >gi|312143229|ref|YP_003994675.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus'] gi|311903880|gb|ADQ14321.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus'] Length = 239 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 109/235 (46%), Positives = 160/235 (68%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +Q+R+I +TR +KYAEGS LV+ GDT +L ++E+ VP ++R GW+T Sbjct: 1 MRNDGRELDQLRDIQITRDFTKYAEGSVLVETGDTMVLCNVSIEDSVPYFLRGQNTGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPR+T +R REA + GR+QEIQR+IGR+LR+++DL +G R I +DCDV+Q Sbjct: 61 AEYSLLPRATQDRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLDKMGERTIWVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + + LK +AA S G++ G ++DL Y Sbjct: 121 ADGGTRTASITGAYVALVDAVNFL--LAEGKLSENPLKDFMAATSVGIVEGKAMLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED VD N MT++G I+E+QG+AE F+++ + +LA+ I +LI++QK Sbjct: 179 EDFRAQVDMNIAMTENGEIIEIQGTAEENPFTREEMNKLYDLAEKGIRELIEIQK 233 >gi|294783495|ref|ZP_06748819.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA] gi|294480373|gb|EFG28150.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA] Length = 435 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T GW+T Sbjct: 2 LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA G+ GR+ EIQR+IGRALRS +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG +VAL ++ + ++ L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYVALALAIKKL--LKDEILEENPLIANVAAISVGKIDSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N +M G +EVQG+ E +TF++ +L+LA+ I +I LQ VI Sbjct: 180 EDSVAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|254976907|ref|ZP_05273379.1| ribonuclease PH [Clostridium difficile QCD-66c26] gi|255316047|ref|ZP_05357630.1| ribonuclease PH [Clostridium difficile QCD-76w55] gi|255518704|ref|ZP_05386380.1| ribonuclease PH [Clostridium difficile QCD-97b34] gi|255651826|ref|ZP_05398728.1| ribonuclease PH [Clostridium difficile QCD-37x79] gi|260684852|ref|YP_003216137.1| ribonuclease Ph [Clostridium difficile CD196] gi|260688510|ref|YP_003219644.1| ribonuclease Ph [Clostridium difficile R20291] gi|306521613|ref|ZP_07407960.1| ribonuclease Ph [Clostridium difficile QCD-32g58] gi|260211015|emb|CBA66330.1| ribonuclease Ph [Clostridium difficile CD196] gi|260214527|emb|CBE07044.1| ribonuclease Ph [Clostridium difficile R20291] Length = 449 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI A Sbjct: 3 RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA Sbjct: 63 EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y E Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ + Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239 >gi|288817498|ref|YP_003431845.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6] gi|288786897|dbj|BAI68644.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6] gi|308751105|gb|ADO44588.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6] Length = 253 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 113/236 (47%), Positives = 159/236 (67%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ N++R I + R ++ EGSCL++FG+T ++ T ++++ VP +++ GWIT Sbjct: 1 MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTVSVQDGVPPFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GR+ EIQRMIGRA+R+ +DL+ +G R IDCDVIQ Sbjct: 61 AEYSMLPRATITRNVRESVQGRISGRTHEIQRMIGRAMRTALDLTKIGERTFWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ D + + + S +K VA++S G + G ++DL+Y Sbjct: 121 ADGGTRTASITGAFVAIADAVIKL--YNEGILSSTPIKDFVASVSVGTVNGQILLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDST VD N V T SG I E+Q E TFS++ F ML+LA I+ LI+LQ+ Sbjct: 179 EDSTASVDMNVVATGSGRISEIQALGEENTFSREEFDRMLSLALAGISQLIELQRA 234 >gi|255094294|ref|ZP_05323772.1| ribonuclease PH [Clostridium difficile CIP 107932] Length = 378 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R Q+R + +TR +KYAEGS L++ G+T ++ TA++EEKVP ++RN+ GWI A Sbjct: 3 RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R R+A G+ GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA Sbjct: 63 EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ + + + K + V+AIS G++ G ++DL Y E Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VD N +MTD VEVQG+ E FS+ +L L + +LI+LQ++ + Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239 >gi|294784524|ref|ZP_06749813.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27] gi|294487740|gb|EFG35099.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27] Length = 434 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GWIT Sbjct: 2 LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + D + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I I+LQ +I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|309388890|gb|ADO76770.1| RNAse PH [Halanaerobium praevalens DSM 2228] Length = 239 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 118/241 (48%), Positives = 164/241 (68%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ NQ+REI +TR +KYAEGS L++ GDT +L ++E+ VP ++R GW+T Sbjct: 1 MRTDGREYNQLREIEITRNYTKYAEGSVLIETGDTMVLCNVSIEDSVPYFLRGQNKGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPR+T +R REA + GR+QEIQR+IGR+LR+++DL +G R I +DCDV+Q Sbjct: 61 AEYSLLPRATQSRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLEKIGERTIWVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + LKG++AA S G++ G ++DL Y Sbjct: 121 ADGGTRTAAITGAFVALVDGINFL--LAEGKIEENPLKGYMAATSVGLVKGEALLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT++G I+E+QG+AE FS++ M LA+ I LI+ QK V+ Sbjct: 179 EDSQAQVDMNIVMTEAGKIIEIQGTAEENPFSREELDQMYELAEKGILGLIEEQKLVLGG 238 Query: 241 E 241 E Sbjct: 239 E 239 >gi|237806963|ref|YP_002891403.1| ribonuclease PH [Tolumonas auensis DSM 9187] gi|259494130|sp|C4L818|RNPH_TOLAT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|237499224|gb|ACQ91817.1| ribonuclease PH [Tolumonas auensis DSM 9187] Length = 237 Score = 339 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 118/224 (52%), Positives = 157/224 (70%), Gaps = 2/224 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R I++TR+ + +AEGS LV+FG T +L TAT+ E VP +++ GW+T Sbjct: 1 MRPSGRTPEQLRPITITRQYTCHAEGSVLVEFGRTKVLCTATVTEGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA SG+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRMHREAASGKQGGRTLEIQRLIARSLRAAVDLTKLGENTITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M + + L VAA+S G+ G P+ DLDY Sbjct: 121 ADGGTRTASITGACVALADALNWM--LAKGSLKTNPLNFMVAAVSVGIYEGAPVCDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 EDS+ + D N VMT++G ++E+QG+AE FSQ+ +L L K Sbjct: 179 EDSSAETDMNLVMTETGKMIEIQGTAEGEPFSQEELMQLLELGK 222 >gi|23464887|ref|NP_695490.1| ribonuclease PH [Bifidobacterium longum NCC2705] gi|227545828|ref|ZP_03975877.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813] gi|296453555|ref|YP_003660698.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301] gi|312133310|ref|YP_004000649.1| rph [Bifidobacterium longum subsp. longum BBMN68] gi|23325477|gb|AAN24126.1| probable ribonuclease PH [Bifidobacterium longum NCC2705] gi|227213944|gb|EEI81783.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517381|emb|CBK70997.1| RNAse PH [Bifidobacterium longum subsp. longum F8] gi|296182986|gb|ADG99867.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301] gi|311772524|gb|ADQ02012.1| Rph [Bifidobacterium longum subsp. longum BBMN68] Length = 258 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 78 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256 >gi|213965923|ref|ZP_03394114.1| ribonuclease PH [Corynebacterium amycolatum SK46] gi|213951501|gb|EEB62892.1| ribonuclease PH [Corynebacterium amycolatum SK46] Length = 253 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 110/238 (46%), Positives = 156/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++MR++++TR + GS LV FG+T ++ TA++E+ VP + R++ GW+TA Sbjct: 10 RADGRAVDEMRKVTITRGFTDNPAGSVLVTFGNTRVMCTASVEQSVPRFKRDSGEGWLTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R+ RE++ G+ GR+ EI R+IGR+LR+ +DL LG I IDCDV+QA Sbjct: 70 EYSMLPASTHERMPRESMRGKVKGRTHEISRLIGRSLRAAIDLKELGENTINIDCDVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L ++ LK VAA+S G++ G +DL Y E Sbjct: 130 DGGTRTASITGAYVALADALTYLHAVGAV--PGTPLKAPVAAVSVGIIDGRVCLDLPYEE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N VMT G VE+QG+ E TF +D ML+ A+ + +LI LQ++V+ Sbjct: 188 DSRAEVDLNVVMTAEGKFVEIQGTGEEGTFDRDQLNDMLDSAEKGLRELIALQQEVLR 245 >gi|82701201|ref|YP_410767.1| ribonuclease PH [Nitrosospira multiformis ATCC 25196] gi|123545290|sp|Q2YCZ6|RNPH_NITMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|82409266|gb|ABB73375.1| RNAse PH [Nitrosospira multiformis ATCC 25196] Length = 238 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R + +TR +++AEGS L++ GDT ++ TA+++EKVP+++R GW+T Sbjct: 1 MRPSKRRPDQLRSVQITRHYTRHAEGSVLIECGDTRIICTASVDEKVPLFLRGKGQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA G+Q GR+ EIQR+IGRALRSV+DL+ LG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTNERMQREAAKGKQSGRTMEIQRLIGRALRSVMDLTKLGERTIQVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+HD + + + + + GHVAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTASITGAFVAVHDAIGTL--LRKQAIEATPITGHVAAVSVGVYEGVPMLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMTD +VE+QG+AE FS++ ML+LA+ I +LI QK+ ++ Sbjct: 179 EDSRCDTDMNIVMTDDLGLVEMQGTAEGMPFSRNDLDMMLDLAQQGIRELIAAQKNALN 237 >gi|213691324|ref|YP_002321910.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522785|gb|ACJ51532.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 258 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 78 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256 >gi|306819763|ref|ZP_07453420.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552198|gb|EFM40132.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 459 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 107/237 (45%), Positives = 159/237 (67%), Gaps = 2/237 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R N+MR I +T+ + YA+GS L++FG+T ++ TA++EEKVP +++N+ GWI+AEY M Sbjct: 15 RANNEMRRIRITKNYAGYADGSVLIEFGNTKVICTASVEEKVPPFLKNSGTGWISAEYSM 74 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R R++ G+ GRSQEIQR+IGR+LR+ VD + LG R I IDCDVIQADGGT Sbjct: 75 LPGSTKQRKVRDSTRGKIDGRSQEIQRLIGRSLRNAVDFTKLGERTIWIDCDVIQADGGT 134 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RT +I GA++A+ ++ + D K + ++AIS G++ G ++DL Y +DS Sbjct: 135 RTTSINGAFIAMALAVKKLYD--RKIISHFPIDSFISAISVGIVRGENVLDLCYEQDSNA 192 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 VD N VMT G VE+QG+ E+ FS+D +L LA+ ++ LQK+++ +E+ Sbjct: 193 QVDMNIVMTSKGEFVEIQGTGEQTPFSRDSLNDLLTLAEKANEKIVNLQKEILGDEI 249 >gi|167622362|ref|YP_001672656.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4] gi|189043775|sp|B0TQK4|RNPH_SHEHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|167352384|gb|ABZ74997.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4] Length = 237 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T Sbjct: 1 MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+Q GR+QEIQR+IGR+LR+ VD+ LG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + ++L LAK I +++ +QK +S Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKASLS 237 >gi|312622868|ref|YP_004024481.1| ribonuclease ph [Caldicellulosiruptor kronotskyensis 2002] gi|312203335|gb|ADQ46662.1| ribonuclease PH [Caldicellulosiruptor kronotskyensis 2002] Length = 258 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPVTDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS D F +L L K I +I++Q++V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEIQREVLGE 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|312134722|ref|YP_004002060.1| ribonuclease ph [Caldicellulosiruptor owensensis OL] gi|311774773|gb|ADQ04260.1| ribonuclease PH [Caldicellulosiruptor owensensis OL] Length = 258 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRGYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS D F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEVQKEVLGQ 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|259418160|ref|ZP_05742079.1| ribonuclease PH [Silicibacter sp. TrichCH4B] gi|259347066|gb|EEW58880.1| ribonuclease PH [Silicibacter sp. TrichCH4B] Length = 237 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 126/237 (53%), Positives = 169/237 (71%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N+MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + L V+AISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVTM--DPLVDPVSAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NF+MT SG ++EVQ SAE + FS+D +++LA ++L ++QK Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTSELAEMQKAA 235 >gi|308235684|ref|ZP_07666421.1| ribonuclease PH [Gardnerella vaginalis ATCC 14018] gi|311114281|ref|YP_003985502.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019] gi|310945775|gb|ADP38479.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019] Length = 254 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 110/240 (45%), Positives = 153/240 (63%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +++R + +TR + EGS L++ G+T ++ TAT VP W R+T GW+T Sbjct: 14 IRFDGRDVDELRPVKITRNFTNVPEGSVLIECGNTRVMCTATFTIGVPRWRRDTGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ A+G I IDCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVKGKIGGRTHEISRLIGRCLRGVIDMKAMGECLIQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D L E + VLK V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVALVDALNWAEKHKHIRSAKNVLKDSVSAVSVGVINGTPMLDLPYV 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D N MT SG+ +E+QG+AE F++D +L+LA +L Q+ +S Sbjct: 194 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFNRDELNVLLDLAAKGNRELQAAQRAALSQ 253 >gi|258544503|ref|ZP_05704737.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826] gi|258520238|gb|EEV89097.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826] Length = 238 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ +Q+R +S+ R V+KYAEGS L++ GDTH+L TA++EEKVP ++R GW+T Sbjct: 1 MRASNRRPDQLRPVSIERGVNKYAEGSALIRCGDTHVLCTASVEEKVPPFLRGKNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R RE+ G+Q GR+ EIQR+IGR+LR+VVDL+ALG R I IDCDV+Q Sbjct: 61 AEYGMLPRATHERTVRESARGKQQGRTVEIQRLIGRSLRAVVDLTALGERAITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+G +VAL D ++ + Q L G +AA+S G+ G P++DL+Y Sbjct: 121 ADGGTRTAAISGGFVALADAIRTLIQQGRLKQ--NPLHGQLAAVSVGVYRGTPLLDLEYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM D G +E+QG+AE F + AML LA I +++++QK + Sbjct: 179 EDSEAETDMNIVMNDGGAFIEIQGTAEGHAFRHEEMQAMLALADKGIREIMQVQKQALG 237 >gi|315153645|gb|EFT97661.1| ribonuclease PH [Enterococcus faecalis TX0031] Length = 451 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LITGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|154686972|ref|YP_001422133.1| ribonuclease PH [Bacillus amyloliquefaciens FZB42] gi|166228265|sp|A7Z7C6|RNPH_BACA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|154352823|gb|ABS74902.1| Rph [Bacillus amyloliquefaciens FZB42] Length = 245 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 111/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA++A+ + + + + ++AAIS GM ++DL+Y Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLVKSG--VIKTSPVTDYLAAISVGMDKEEGLLLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N +MT SG VE+QG+ E ATFS++ +L+LA+ I LI+ QK+V+ Sbjct: 179 EEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQKEVLG 238 Query: 240 NEV 242 + Sbjct: 239 ETL 241 >gi|312128053|ref|YP_003992927.1| ribonuclease ph [Caldicellulosiruptor hydrothermalis 108] gi|311778072|gb|ADQ07558.1| ribonuclease PH [Caldicellulosiruptor hydrothermalis 108] Length = 258 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS D F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKRGIQRIIEVQKEVLGE 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|300932726|ref|ZP_07147982.1| ribonuclease PH [Corynebacterium resistens DSM 45100] Length = 250 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 112/239 (46%), Positives = 158/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++MR + +TR + GS LV+FG+T ++ TA++E VP + +++ GW+TA Sbjct: 11 RADGRAVDEMRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVEIGVPRFKKDSGEGWLTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R+ RE++ G+ GR+ EI R++GRALR+ VDL+ LG I IDCDV+QA Sbjct: 71 EYAMLPSSTHERMPRESMKGKVKGRTHEISRLVGRALRAAVDLTQLGENTIAIDCDVLQA 130 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L+ +++ + L VAA+S G++ G +DL Y E Sbjct: 131 DGGTRTAAITGAYVALADALKVLKE--QGVVPGEPLLPPVAAVSVGIIDGVACLDLPYEE 188 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS DVD N VMT+ G VE+QG+ E A F + AMLNLA+ + +LI QK+ ++ Sbjct: 189 DSRADVDMNVVMTEQGRFVEIQGTGEHAEFDRAELNAMLNLAEGGLRELISAQKEALAQ 247 >gi|289706339|ref|ZP_06502697.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58] gi|289556834|gb|EFD50167.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58] Length = 254 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 113/238 (47%), Positives = 162/238 (68%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA Sbjct: 10 RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+V GR GGR+ EI R+IGR+LR+V+DLSALG I++DCDV+ A Sbjct: 70 EYAMLPRATNERNQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL + + + + VLK VAA+S G++ G P++DL Y E Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V+T +G VEVQG+AE A F++ +L+LA +L ++Q + ++ Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLA 247 >gi|312899597|ref|ZP_07758923.1| ribonuclease PH [Enterococcus faecalis TX0470] gi|311293276|gb|EFQ71832.1| ribonuclease PH [Enterococcus faecalis TX0470] Length = 451 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAINHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|257085617|ref|ZP_05579978.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1] gi|256993647|gb|EEU80949.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1] Length = 451 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|308174534|ref|YP_003921239.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7] gi|307607398|emb|CBI43769.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7] gi|328554456|gb|AEB24948.1| ribonuclease PH [Bacillus amyloliquefaciens TA208] gi|328912859|gb|AEB64455.1| ribonuclease PH [Bacillus amyloliquefaciens LL3] Length = 245 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 111/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA++A+ + + + ++AAIS GM ++DL+Y Sbjct: 121 ADGGTRTASITGAFLAMAIAAGKLVKSG--VIKTSPVTDYLAAISVGMDKEEGLLLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N +MT SG VE+QG+ E ATFS++ +L+LA+ I LI+ QK+V+ Sbjct: 179 EEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQKEVLG 238 Query: 240 NEV 242 + + Sbjct: 239 DTL 241 >gi|229546199|ref|ZP_04434924.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322] gi|229550384|ref|ZP_04439109.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200] gi|255973155|ref|ZP_05423741.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1] gi|255976198|ref|ZP_05426784.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2] gi|256762130|ref|ZP_05502710.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3] gi|256852772|ref|ZP_05558142.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8] gi|256958619|ref|ZP_05562790.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5] gi|256965477|ref|ZP_05569648.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704] gi|257078027|ref|ZP_05572388.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1] gi|257082915|ref|ZP_05577276.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol] gi|257086477|ref|ZP_05580838.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6] gi|257415736|ref|ZP_05592730.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis AR01/DG] gi|257422961|ref|ZP_05599951.1| ribonuclease PH [Enterococcus faecalis X98] gi|294780993|ref|ZP_06746345.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1] gi|300860046|ref|ZP_07106134.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11] gi|307273813|ref|ZP_07555035.1| ribonuclease PH [Enterococcus faecalis TX0855] gi|307274576|ref|ZP_07555756.1| ribonuclease PH [Enterococcus faecalis TX2134] gi|307278842|ref|ZP_07559905.1| ribonuclease PH [Enterococcus faecalis TX0860] gi|307288573|ref|ZP_07568557.1| ribonuclease PH [Enterococcus faecalis TX0109] gi|307291105|ref|ZP_07570990.1| ribonuclease PH [Enterococcus faecalis TX0411] gi|312951374|ref|ZP_07770272.1| ribonuclease PH [Enterococcus faecalis TX0102] gi|229304506|gb|EEN70502.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200] gi|229308723|gb|EEN74710.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322] gi|255964173|gb|EET96649.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1] gi|255969070|gb|EET99692.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2] gi|256683381|gb|EEU23076.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3] gi|256711231|gb|EEU26269.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8] gi|256949115|gb|EEU65747.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5] gi|256955973|gb|EEU72605.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704] gi|256986057|gb|EEU73359.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1] gi|256990945|gb|EEU78247.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol] gi|256994507|gb|EEU81809.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6] gi|257157564|gb|EEU87524.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ARO1/DG] gi|257164785|gb|EEU94745.1| ribonuclease PH [Enterococcus faecalis X98] gi|294451939|gb|EFG20389.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1] gi|300850864|gb|EFK78613.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11] gi|306497759|gb|EFM67291.1| ribonuclease PH [Enterococcus faecalis TX0411] gi|306500480|gb|EFM69813.1| ribonuclease PH [Enterococcus faecalis TX0109] gi|306504513|gb|EFM73720.1| ribonuclease PH [Enterococcus faecalis TX0860] gi|306508728|gb|EFM77818.1| ribonuclease PH [Enterococcus faecalis TX2134] gi|306509498|gb|EFM78546.1| ribonuclease PH [Enterococcus faecalis TX0855] gi|310630634|gb|EFQ13917.1| ribonuclease PH [Enterococcus faecalis TX0102] gi|315028079|gb|EFT40011.1| ribonuclease PH [Enterococcus faecalis TX2137] gi|315030712|gb|EFT42644.1| ribonuclease PH [Enterococcus faecalis TX4000] gi|315031600|gb|EFT43532.1| ribonuclease PH [Enterococcus faecalis TX0017] gi|315034958|gb|EFT46890.1| ribonuclease PH [Enterococcus faecalis TX0027] gi|315148459|gb|EFT92475.1| ribonuclease PH [Enterococcus faecalis TX4244] gi|315156537|gb|EFU00554.1| ribonuclease PH [Enterococcus faecalis TX0043] gi|315158363|gb|EFU02380.1| ribonuclease PH [Enterococcus faecalis TX0312] gi|315165533|gb|EFU09550.1| ribonuclease PH [Enterococcus faecalis TX1302] gi|315168390|gb|EFU12407.1| ribonuclease PH [Enterococcus faecalis TX1341] gi|323480361|gb|ADX79800.1| ribonuclease PH [Enterococcus faecalis 62] gi|329576387|gb|EGG57900.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1467] Length = 451 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|23335847|ref|ZP_00121079.1| COG0689: RNase PH [Bifidobacterium longum DJO10A] gi|189439894|ref|YP_001954975.1| ribonuclease PH [Bifidobacterium longum DJO10A] gi|189428329|gb|ACD98477.1| RNase PH [Bifidobacterium longum DJO10A] Length = 258 Score = 338 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 157/239 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 78 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + S+VLK +V+A+S G++ G P++DL Y Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256 >gi|296331615|ref|ZP_06874084.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675426|ref|YP_003867098.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23] gi|296151210|gb|EFG92090.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413670|gb|ADM38789.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23] Length = 245 Score = 338 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 108/243 (44%), Positives = 157/243 (64%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA++A+ + + + + +AAIS G+ ++DL+Y Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +L+ QK+ + Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELVDKQKEELG 238 Query: 240 NEV 242 + + Sbjct: 239 DSL 241 >gi|29375698|ref|NP_814852.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583] gi|256962282|ref|ZP_05566453.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96] gi|257418951|ref|ZP_05595945.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11] gi|293383311|ref|ZP_06629226.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712] gi|293387532|ref|ZP_06632081.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613] gi|312905818|ref|ZP_07764838.1| ribonuclease PH [Enterococcus faecalis DAPTO 512] gi|312909127|ref|ZP_07767986.1| ribonuclease PH [Enterococcus faecalis DAPTO 516] gi|29343159|gb|AAO80922.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583] gi|256952778|gb|EEU69410.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96] gi|257160779|gb|EEU90739.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11] gi|291079334|gb|EFE16698.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712] gi|291083042|gb|EFE20005.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613] gi|310628157|gb|EFQ11440.1| ribonuclease PH [Enterococcus faecalis DAPTO 512] gi|311290551|gb|EFQ69107.1| ribonuclease PH [Enterococcus faecalis DAPTO 516] gi|315174641|gb|EFU18658.1| ribonuclease PH [Enterococcus faecalis TX1346] gi|315573714|gb|EFU85905.1| ribonuclease PH [Enterococcus faecalis TX0309B] gi|315582671|gb|EFU94862.1| ribonuclease PH [Enterococcus faecalis TX0309A] gi|327534753|gb|AEA93587.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis OG1RF] Length = 451 Score = 338 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|307268764|ref|ZP_07550132.1| ribonuclease PH [Enterococcus faecalis TX4248] gi|306514892|gb|EFM83439.1| ribonuclease PH [Enterococcus faecalis TX4248] Length = 451 Score = 338 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|291460911|ref|ZP_06025826.2| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC 33693] gi|291380070|gb|EFE87588.1| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC 33693] Length = 436 Score = 338 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 114/241 (47%), Positives = 158/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T GW+T Sbjct: 3 LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA G+ GR+ EIQR+IGRALRS +DL LG R I IDCDVIQ Sbjct: 63 AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 123 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLIANVAAISVGKINSELMVDLKYS 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N +M G +EVQG+ E +TF++ +L+LA+ I +I LQ VI Sbjct: 181 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ 240 Query: 241 E 241 E Sbjct: 241 E 241 >gi|99082712|ref|YP_614866.1| RNAse PH [Ruegeria sp. TM1040] gi|122397509|sp|Q1GCL2|RNPH_SILST RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|99038992|gb|ABF65604.1| RNAse PH [Ruegeria sp. TM1040] Length = 237 Score = 338 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 126/237 (53%), Positives = 169/237 (71%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N+MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + L V+AISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVTM--DPLVDPVSAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NF+MT SG ++EVQ SAE + FS+D +++LA ++L ++QK Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTSELAEMQKAA 235 >gi|312903655|ref|ZP_07762831.1| ribonuclease PH [Enterococcus faecalis TX0635] gi|310633008|gb|EFQ16291.1| ribonuclease PH [Enterococcus faecalis TX0635] Length = 451 Score = 338 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GWI Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWIA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|222528843|ref|YP_002572725.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725] gi|254808576|sp|B9MQJ8|RNPH_ANATD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|222455690|gb|ACM59952.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725] Length = 258 Score = 338 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPVTDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEVLGQ 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|317129838|ref|YP_004096120.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522] gi|315474786|gb|ADU31389.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522] Length = 255 Score = 338 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 113/240 (47%), Positives = 159/240 (66%), Gaps = 3/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ + +R++ + K+ EGS L+ FG+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRKTDDIRKVDIIPHYIKHPEGSVLISFGETKVICAASIEDRVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL A+G R I IDCDVIQ Sbjct: 61 AEYSMLPRATEQRNIRESAKGKLSGRTMEIQRLIGRALRSVVDLDAIGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA++TGA+VA+ L +++ + +K +AAIS G+ G I+DLDY Sbjct: 121 ADGGTRTASVTGAFVAMALALHKLKEAKQIKKF--PIKHFLAAISVGVNEGNIAILDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N +MT + VE+QG+ E ATFS+ ML+LA+ I +L QK+ + Sbjct: 179 IEDSKANVDMNIIMTGNSEFVEIQGTGEEATFSRKQLNEMLDLAELGINELFLHQKEALG 238 >gi|256618706|ref|ZP_05475552.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200] gi|257089534|ref|ZP_05583895.1| ribonuclease PH [Enterococcus faecalis CH188] gi|256598233|gb|EEU17409.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200] gi|256998346|gb|EEU84866.1| ribonuclease PH [Enterococcus faecalis CH188] gi|315577483|gb|EFU89674.1| ribonuclease PH [Enterococcus faecalis TX0630] Length = 451 Score = 338 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|239917361|ref|YP_002956919.1| RNAse PH [Micrococcus luteus NCTC 2665] gi|281414156|ref|ZP_06245898.1| RNAse PH [Micrococcus luteus NCTC 2665] gi|239838568|gb|ACS30365.1| RNAse PH [Micrococcus luteus NCTC 2665] Length = 254 Score = 338 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 113/238 (47%), Positives = 162/238 (68%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R I++TR S+ AEGS L++FG+T +L TA+ E VP W++ GW+TA Sbjct: 10 RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+V GR GGR+ EI R+IGR+LR+V+DLSALG I++DCDV+ A Sbjct: 70 EYAMLPRATNERSQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL + + + + VLK VAA+S G++ G P++DL Y E Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V+T +G VEVQG+AE A F++ +L+LA +L ++Q + ++ Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLA 247 >gi|145296503|ref|YP_001139324.1| ribonuclease PH [Corynebacterium glutamicum R] gi|166228277|sp|A4QGQ6|RNPH_CORGB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|140846423|dbj|BAF55422.1| hypothetical protein [Corynebacterium glutamicum R] Length = 245 Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 9 RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE+++G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA Sbjct: 69 EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D ++ +++ L VAA+S G++ G +DL Y E Sbjct: 129 DGGTRTASITGAYVALADAIKVLQE--RGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS DVD N VMT+ G VE+QG+ E TF++ ML+ A+ +L+ QK + Sbjct: 187 DSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDYAEKGCRELVAAQKAALG 244 >gi|315150398|gb|EFT94414.1| ribonuclease PH [Enterococcus faecalis TX0012] Length = 451 Score = 338 bits (868), Expect = 4e-91, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D ML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNTMLFYGKTGIEELIAYQKEAL 238 >gi|39996894|ref|NP_952845.1| ribonuclease PH [Geobacter sulfurreducens PCA] gi|61215993|sp|Q74C79|RNPH_GEOSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|39983782|gb|AAR35172.1| ribonuclease PH [Geobacter sulfurreducens PCA] gi|307634928|gb|ADI84630.2| ribonuclease PH [Geobacter sulfurreducens KN400] Length = 238 Score = 338 bits (868), Expect = 4e-91, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +R I +TR+ K+AEGS LV+FGDT +L TA++EE VP ++R GW+T Sbjct: 1 MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASVEESVPPFLRGKGGGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GGR+ EIQR+IGR+LR+V DL+ LG R ++IDCDV+Q Sbjct: 61 AEYSMLPRATHTRSPREAAKGKLGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D Q + S + ++ VAA+S G++ G ++DL+Y Sbjct: 121 ADGGTRTASITGAYVALVDAFQWL--VSQGTIATLPVREAVAAVSVGIVGGEVLLDLNYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DVD NFVMT SG VEVQG+AE F+ M +LA I L+ +Q++V+ Sbjct: 179 EDSRADVDMNFVMTSSGRFVEVQGTAEAEPFTCAQMDDMRSLAMIGIERLMAIQQEVLEQ 238 >gi|125972712|ref|YP_001036622.1| ribonuclease PH [Clostridium thermocellum ATCC 27405] gi|125712937|gb|ABN51429.1| RNAse PH [Clostridium thermocellum ATCC 27405] Length = 263 Score = 338 bits (868), Expect = 4e-91, Method: Composition-based stats. Identities = 112/240 (46%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR ++ +R + +TR K+AEGS L++ GDT ++ TAT+++KVP + +NT GW+T Sbjct: 2 LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ + GRSQEIQR+IGRALRSVV+L+ LG R+IIIDCDVIQ Sbjct: 62 AEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL D + + D + + +AA+S G++ G ++DL Y Sbjct: 122 ADGGTRTASITGGFVALVDACKKLVD--DGIIEKIPVTDFLAAVSVGIVDGEEMLDLCYM 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D N VMT G +E+Q + E+ F ++ F +L+ A+ I+ LI++QKD + Sbjct: 180 EDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDALGQ 239 >gi|260431972|ref|ZP_05785943.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157] gi|260415800|gb|EEX09059.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157] Length = 237 Score = 338 bits (868), Expect = 4e-91, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 170/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + + L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVI--TDPLVDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF+MT SG ++EVQ SAE + FS+ ++ LA+ +++L+ QK + Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRAQMDQLMELAEKGVSELVAAQKAATA 237 >gi|255528421|ref|ZP_05395219.1| ribonuclease PH [Clostridium carboxidivorans P7] gi|296184854|ref|ZP_06853265.1| ribonuclease PH [Clostridium carboxidivorans P7] gi|255507888|gb|EET84330.1| ribonuclease PH [Clostridium carboxidivorans P7] gi|296050636|gb|EFG90059.1| ribonuclease PH [Clostridium carboxidivorans P7] Length = 249 Score = 338 bits (868), Expect = 4e-91, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ +Q+R +TR +KYAEGS L++ GDT ++ TA++E+KVP +++ GWIT Sbjct: 1 MRIDGRKNDQIRHTKITRNYTKYAEGSVLIEAGDTKVICTASIEDKVPPFLKGKGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY M+PRST R R+ G+ GR+ EIQR+IGRALRSVVDL ++G + I IDCDVIQ Sbjct: 61 CEYNMIPRSTKVRKVRDINRGKIDGRTMEIQRIIGRALRSVVDLKSIGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA++AL D + + + ++ V AIS G++ ++DL Y Sbjct: 121 ADGGTRTASISGAFIALVDAVNKLHKQTPFNVY--PVRDFVGAISVGIVGNVKMLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMTDSG +E+QG+ E FS+ +L+LA+ I +I+++K+ + Sbjct: 179 EDSKANVDMNVVMTDSGEFIEIQGTGEEKPFSKQDLSELLSLAEQGINHVIQIEKESLK 237 >gi|297618203|ref|YP_003703362.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680] gi|297146040|gb|ADI02797.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680] Length = 241 Score = 338 bits (868), Expect = 4e-91, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR ++ R I++ +K+A GS L++ GDT ++ TA++E+KVP +++ T GW+TA Sbjct: 3 RTSGRAFDEPRPINIITGYTKFAPGSVLIETGDTRVICTASVEDKVPPFLKGTGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE GR GR+ EIQR+IGRALR+VVD+SALG R + IDCDVIQA Sbjct: 63 EYSMLPGSTPTRTAREVTRGRVSGRTSEIQRLIGRALRAVVDMSALGERTVWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL+ +Q +++ + +VAA S G++ G P++DL+YGE Sbjct: 123 DGGTRTASITGAFVALYLAMQKLKESG--IIERLPVTDYVAATSVGIVRGIPLLDLEYGE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N VMT+SG VE+QG+AE FSQD +L LAK I+ LI QK V+ E Sbjct: 181 DSEAEVDMNVVMTESGKFVEIQGTAENNPFSQDELDELLRLAKKGISILIAKQKAVLGAE 240 >gi|217420445|ref|ZP_03451950.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576] gi|238561030|ref|ZP_00442682.2| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4] gi|251766543|ref|ZP_02264154.2| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20] gi|254196137|ref|ZP_04902562.1| ribonuclease PH [Burkholderia pseudomallei S13] gi|254207704|ref|ZP_04914054.1| ribonuclease PH [Burkholderia mallei JHU] gi|121229702|gb|ABM52220.1| ribonuclease PH [Burkholderia mallei SAVP1] gi|147751598|gb|EDK58665.1| ribonuclease PH [Burkholderia mallei JHU] gi|169652881|gb|EDS85574.1| ribonuclease PH [Burkholderia pseudomallei S13] gi|217395857|gb|EEC35874.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576] gi|238525408|gb|EEP88836.1| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4] gi|243065369|gb|EES47555.1| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20] Length = 295 Score = 338 bits (868), Expect = 4e-91, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 171/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T Sbjct: 58 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 117 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ Sbjct: 118 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 177 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY Sbjct: 178 ADGGTRTASITGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGVFGGTPVLDLDYD 235 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ + Sbjct: 236 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 294 >gi|114330335|ref|YP_746557.1| ribonuclease PH [Nitrosomonas eutropha C91] gi|122314626|sp|Q0AJ79|RNPH_NITEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|114307349|gb|ABI58592.1| RNAse PH [Nitrosomonas eutropha C91] Length = 242 Score = 338 bits (868), Expect = 4e-91, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R + R QMR I +TR ++AEGS L+++G+T ++ TA++ EKVP +++ GW+TA Sbjct: 3 RYNHRTLAQMRPIRITRHYIRHAEGSVLIEYGETKVICTASVIEKVPPFLKGAGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R++REA G+Q GR+ EIQR+IGRALRSV+DL LG R I IDCDVIQA Sbjct: 63 EYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSVLDLKKLGERTIQIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ + K +K HVAA+S G+L G P++DLDY E Sbjct: 123 DGGTRTASITGAFVALCDAVGYLR--AEKIISENPIKDHVAAVSVGILKGQPLLDLDYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS+ D D N VMT + +VEVQG+AE+ FS+ ML++A+ + +L LQ+ + Sbjct: 181 DSSCDTDLNVVMTGNLGLVEVQGTAEKVVFSRQELDVMLDMAQQGLQELFDLQRKTLET 239 >gi|163745104|ref|ZP_02152464.1| ribonuclease PH [Oceanibulbus indolifex HEL-45] gi|161381922|gb|EDQ06331.1| ribonuclease PH [Oceanibulbus indolifex HEL-45] Length = 237 Score = 338 bits (868), Expect = 4e-91, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 173/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ ++MR +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRKLDEMRAVSIETGFTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD SALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAALGKQGGRTVEIQRLIGRALRAGVDRSALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG W+AL + + + S L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWIALRLAVNKLMKAGDVV--SDPLVDPVAAVSCGIYAGQPLLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF+MT SG ++E+Q SAE +T+++D +++LA+ + +L +QK V + Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEIQMSAEGSTYTRDQMNQLMDLAEKGVGELAAIQKSVTA 237 >gi|188579737|ref|YP_001923182.1| ribonuclease PH [Methylobacterium populi BJ001] gi|226736916|sp|B1ZJ73|RNPH_METPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|179343235|gb|ACB78647.1| ribonuclease PH [Methylobacterium populi BJ001] Length = 237 Score = 338 bits (868), Expect = 4e-91, Method: Composition-based stats. Identities = 137/239 (57%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC M + LK HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T G IVEVQG+AE FS+ F +L LAK IA+L++LQ+ I+ Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAEMEPFSEAQFIELLALAKGGIANLVELQRKAIA 237 >gi|312794043|ref|YP_004026966.1| ribonuclease ph [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181183|gb|ADQ41353.1| ribonuclease PH [Caldicellulosiruptor kristjanssonii 177R1B] Length = 258 Score = 338 bits (867), Expect = 4e-91, Method: Composition-based stats. Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEVLGE 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|218551172|ref|YP_002384963.1| ribonuclease PH [Escherichia fergusonii ATCC 35469] gi|218560715|ref|YP_002393628.1| ribonuclease PH [Escherichia coli S88] gi|218691927|ref|YP_002400139.1| ribonuclease PH [Escherichia coli ED1a] gi|218702410|ref|YP_002410039.1| ribonuclease PH [Escherichia coli IAI39] gi|218707277|ref|YP_002414796.1| ribonuclease PH [Escherichia coli UMN026] gi|26110719|gb|AAN82903.1|AE016769_18 Ribonuclease PH [Escherichia coli CFT073] gi|91074734|gb|ABE09615.1| ribonuclease PH [Escherichia coli UTI89] gi|218358713|emb|CAQ91369.1| ribonuclease PH [Escherichia fergusonii ATCC 35469] gi|218367484|emb|CAR05266.1| ribonuclease PH [Escherichia coli S88] gi|218372396|emb|CAR20270.1| ribonuclease PH [Escherichia coli IAI39] gi|218429491|emb|CAR10314.1| ribonuclease PH [Escherichia coli ED1a] gi|218434374|emb|CAR15299.1| ribonuclease PH [Escherichia coli UMN026] Length = 246 Score = 338 bits (867), Expect = 4e-91, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 9 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 69 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S G++ G + DL+Y Sbjct: 129 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 187 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 246 >gi|149189226|ref|ZP_01867513.1| ribonuclease PH [Vibrio shilonii AK1] gi|148836980|gb|EDL53930.1| ribonuclease PH [Vibrio shilonii AK1] Length = 238 Score = 338 bits (867), Expect = 4e-91, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G + +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMRREASSGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VA+ D H+ + + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASISGASVAMADAFAHL--VAKGKLKANPMKGHVAAVSVGILGEDILCDLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE F+ A+L A IA+++ QK + + Sbjct: 179 EDSAADTDMNVVMTEDGRMIEIQGTAEGEPFTHKELMALLESANKGIAEIVAAQKLALED 238 >gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030] gi|300533569|gb|EFK54629.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030] Length = 245 Score = 338 bits (867), Expect = 4e-91, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR ++MR + +TR + GS LV+FG+T ++ TA+ EE VP + +++ GW+T Sbjct: 8 LRADGRALDEMRPVRITRGFTSNPAGSVLVEFGNTRVMCTASAEEGVPRFKKDSGEGWLT 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL+ALG I +DCDV+Q Sbjct: 68 AEYAMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLTALGENTIQLDCDVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + ++++ + L VAA+S G++ G +DL Y Sbjct: 128 ADGGTRTASITGAYVALADAIGYLKE--QGVVPGEPLLAPVAAVSVGIVDGRVCLDLPYE 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMTDSG VEVQG+ E F ++ ML+ A+ +LI QK + Sbjct: 186 EDSRAEVDLNVVMTDSGDFVEVQGTGEHGLFGREQLGLMLDAAEKGCRELIDAQKAALG 244 >gi|260494952|ref|ZP_05815081.1| ribonuclease PH [Fusobacterium sp. 3_1_33] gi|260197395|gb|EEW94913.1| ribonuclease PH [Fusobacterium sp. 3_1_33] Length = 434 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N +M G +EVQG+ E +TF++ +L+LA++ I LIKLQ ++I+ Sbjct: 180 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|260774477|ref|ZP_05883391.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14] gi|260610604|gb|EEX35809.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14] Length = 238 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +Q+R I +TR + YAEGS LV+FG+T +L AT+EE VP W++ GW+T Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEETVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GA VA+ D H+ + + +K HVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTAAISGASVAMADAFAHL--VAKGKLKANPMKSHVAAVSVGILGENILCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++E+QG+AE FS + A+L A+ I D++ QK ++ Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLASAQKGIVDIVAAQKAALAE 238 >gi|219670395|ref|YP_002460830.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2] gi|219540655|gb|ACL22394.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2] Length = 247 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 113/236 (47%), Positives = 153/236 (64%), Gaps = 2/236 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++R + LTR + EGS L++ G T ++ TAT+EEKVP++ + T GW+TA Sbjct: 3 RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL LG R I +DCDVIQA Sbjct: 63 EYSMLPRATQTRNPRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H+ + + +AA+S G + G ++DL Y E Sbjct: 123 DGGTRTASITGAYVALVDAVNHL--LAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DS +VD N VMT G VE+QG+AE F ++ L LA+ I +L+ +QK Sbjct: 181 DSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQKAA 236 >gi|110677820|ref|YP_680827.1| ribonuclease PH [Roseobacter denitrificans OCh 114] gi|123362332|sp|Q16D02|RNPH_ROSDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|109453936|gb|ABG30141.1| ribonuclease PH [Roseobacter denitrificans OCh 114] Length = 237 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 125/239 (52%), Positives = 171/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ N+MR +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRELNEMRPVSIETGFTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++RE+ +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + S L VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVI--SDPLVDPVAAISCGIYAGQPVMDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF+MT S ++EVQ SAE ATFS+D +++LA+ + +L+ QK + Sbjct: 179 EDSEAGVDGNFIMTGSKQLIEVQMSAEGATFSRDQMNQLMDLAEKGVGELVAAQKAATA 237 >gi|312877642|ref|ZP_07737599.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A] gi|311795589|gb|EFR11961.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A] Length = 258 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 114/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE A FS + F +L L K I +I++QK+V+ Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEVLGE 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|315170973|gb|EFU14990.1| ribonuclease PH [Enterococcus faecalis TX1342] Length = 451 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAINHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEAL 238 >gi|302865661|ref|YP_003834298.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029] gi|315502225|ref|YP_004081112.1| ribonuclease ph [Micromonospora sp. L5] gi|302568520|gb|ADL44722.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029] gi|315408844|gb|ADU06961.1| ribonuclease PH [Micromonospora sp. L5] Length = 242 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 116/240 (48%), Positives = 162/240 (67%), Gaps = 1/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R ++LTR S + EGS LV+FG T +L TA++ E VP W + + GW+TA Sbjct: 3 RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+ VDL ALG I++DCDV+QA Sbjct: 63 EYAMLPRATNTRSDRESVRGKVGGRTHEISRLIGRSLRACVDLKALGENSIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VALHD + + + ++ +V+ VAA+S G++ G P++DL Y Sbjct: 123 DGGTRTAAITGAYVALHDAVTWLAERKALAGKVEKVMHRSVAAVSVGVIGGEPMLDLCYA 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED T +VD N V T +G VEVQG+ E F++D A+L+L +L Q+ +S+ Sbjct: 183 EDVTAEVDMNVVCTGTGDFVEVQGTGEAGVFARDQLDALLDLGVAGCLELADAQRKALSS 242 >gi|257069148|ref|YP_003155403.1| RNAse PH [Brachybacterium faecium DSM 4810] gi|256559966|gb|ACU85813.1| RNAse PH [Brachybacterium faecium DSM 4810] Length = 252 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 115/240 (47%), Positives = 160/240 (66%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+RE+ +TR +AEGS L++FG T +L A+ VP W + + GW+TA Sbjct: 12 RIDGRTPDQLREVRITRGWLDHAEGSALIEFGRTRVLCAASFTAGVPRWKQGSGSGWVTA 71 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R RE+V G+ GGR+ EI R+IGR+LR+V+DL ALG I +DCDV+QA Sbjct: 72 EYAMLPRATNSRSPRESVKGKIGGRTHEISRLIGRSLRAVIDLDALGENTIQLDCDVLQA 131 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + +QVL V+AIS G++ P++DL+Y E Sbjct: 132 DGGTRTAAITGAYVALADAISWGKQHTALPAAAQVLTDSVSAISVGIVDDRPLLDLEYRE 191 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D N V+T SG VEVQG+AE A F + A+L+LA A L + Q+DV++ + Sbjct: 192 DVAAGTDMNVVVTGSGSFVEVQGTAEGAPFDRAELGALLDLATGGCAQLAQTQQDVLAQQ 251 >gi|218556206|ref|YP_002389119.1| ribonuclease PH [Escherichia coli IAI1] gi|218697364|ref|YP_002405031.1| ribonuclease PH [Escherichia coli 55989] gi|254038843|ref|ZP_04872895.1| ribonuclease PH [Escherichia sp. 1_1_43] gi|218354096|emb|CAV00651.1| ribonuclease PH [Escherichia coli 55989] gi|218362974|emb|CAR00611.1| ribonuclease PH [Escherichia coli IAI1] gi|226838808|gb|EEH70835.1| ribonuclease PH [Escherichia sp. 1_1_43] Length = 246 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 127/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 9 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 69 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S G++ G I DL+Y Sbjct: 129 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 187 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 246 >gi|220924628|ref|YP_002499930.1| ribonuclease PH [Methylobacterium nodulans ORS 2060] gi|254808593|sp|B8IFR7|RNPH_METNO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|219949235|gb|ACL59627.1| ribonuclease PH [Methylobacterium nodulans ORS 2060] Length = 237 Score = 338 bits (867), Expect = 6e-91, Method: Composition-based stats. Identities = 135/239 (56%), Positives = 176/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++R+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GWIT Sbjct: 1 MRPSKRAPEELRKVTLERGVARYAEGSCLVTFGETRVLCTASLEERGPSWLRGSGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE +G+ GR+QEIQR+IGR+LR+VV+L A+G RQI+IDCDV+Q Sbjct: 61 AEYAMLPRATHERNRREVNAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALH+C M S ++ HVAA+SCG+ G PI+DLDY Sbjct: 121 ADGGTRTASITGAWVALHECFTWMR--SRSIISVDPMRDHVAAVSCGIHKGTPILDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T SG IVEVQG+AE FS++ F +L LAK +A L+ LQK + Sbjct: 179 EDSAAETDANFVITGSGGIVEVQGTAEVTPFSEEEFLGLLRLAKSGVAQLVALQKQAVG 237 >gi|294787314|ref|ZP_06752567.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305] gi|294484670|gb|EFG32305.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305] Length = 260 Score = 337 bits (866), Expect = 6e-91, Method: Composition-based stats. Identities = 107/242 (44%), Positives = 157/242 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R + +TR ++ EGS L++ G+T +L TAT + VP W R++ GW+T Sbjct: 17 IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVT 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T +R RE+V G+ GGR+ EI R+IGR LR +VD+ ALG QI IDCDV+Q Sbjct: 77 AEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQ 136 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + + +VL V+A+S G++ G P++DL Y Sbjct: 137 ADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYV 196 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D N MT SG+ +E+QG+AE FS+ +L+LA+ +L +Q + + Sbjct: 197 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQ 256 Query: 241 EV 242 + Sbjct: 257 AI 258 >gi|288942595|ref|YP_003444835.1| ribonuclease PH [Allochromatium vinosum DSM 180] gi|288897967|gb|ADC63803.1| ribonuclease PH [Allochromatium vinosum DSM 180] Length = 241 Score = 337 bits (866), Expect = 6e-91, Method: Composition-based stats. Identities = 119/241 (49%), Positives = 162/241 (67%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ ++ R I TR +++AEGS LV+FGDT +L TA++E +VP +++ GWIT Sbjct: 1 MRPSQRRPDEARPICFTRGFTRHAEGSVLVEFGDTRVLCTASVEPRVPPFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG R+ REA G+QGGR+ EIQR+IGRALR+ V L+ALG R I +DCDV+Q Sbjct: 61 AEYGMLPRSTGERMPREAARGKQGGRTLEIQRLIGRALRAAVYLNALGERTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL + + H+ + +K +AA+S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALREAIDHLLASGQL--TADPIKTQIAAVSVGIYQGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + D N VM G +EVQG+AE F++ A+L L I + Q+ + + Sbjct: 179 EDSSAETDMNLVMDGEGRFIEVQGTAEGHPFTRAELDALLELGAAGIRSIQAAQRAALED 238 Query: 241 E 241 Sbjct: 239 R 239 >gi|315144635|gb|EFT88651.1| ribonuclease PH [Enterococcus faecalis TX2141] gi|315160934|gb|EFU04951.1| ribonuclease PH [Enterococcus faecalis TX0645] Length = 451 Score = 337 bits (866), Expect = 6e-91, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEAL 238 >gi|89895968|ref|YP_519455.1| hypothetical protein DSY3222 [Desulfitobacterium hafniense Y51] gi|89335416|dbj|BAE85011.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 247 Score = 337 bits (866), Expect = 6e-91, Method: Composition-based stats. Identities = 113/236 (47%), Positives = 153/236 (64%), Gaps = 2/236 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++R + LTR + EGS L++ G T ++ TAT+EEKVP++ + T GW+TA Sbjct: 3 RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL LG R I +DCDVIQA Sbjct: 63 EYSMLPRATQTRNHRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H+ + + +AA+S G + G ++DL Y E Sbjct: 123 DGGTRTASITGAYVALVDAVNHL--LAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DS +VD N VMT G VE+QG+AE F ++ L LA+ I +L+ +QK Sbjct: 181 DSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQKAA 236 >gi|329925260|ref|ZP_08280203.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5] gi|328940093|gb|EGG36426.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5] Length = 252 Score = 337 bits (866), Expect = 6e-91, Method: Composition-based stats. Identities = 114/239 (47%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR+ +++R ++L+ V+KYAEGS ++ GDT +L TAT++EKVP +++ GW+T Sbjct: 1 MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA+VAL + + + + ++A+IS G+ G ++DL+Y Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAEQHKLAVF--PITDYLASISVGIAGGQALLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT SG VEVQG+ E + FS++ +L L + I +LI+ Q++ + Sbjct: 179 EDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEALG 237 >gi|119947081|ref|YP_944761.1| ribonuclease PH [Psychromonas ingrahamii 37] gi|166228305|sp|A1T097|RNPH_PSYIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|119865685|gb|ABM05162.1| RNAse PH [Psychromonas ingrahamii 37] Length = 239 Score = 337 bits (866), Expect = 6e-91, Method: Composition-based stats. Identities = 118/241 (48%), Positives = 156/241 (64%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q REI +TR + YAEGS L++ G+T +L A++ VP +++ GW+T Sbjct: 1 MRPSNRTPEQNREIKITRHYTDYAEGSVLIEMGNTKVLCNASVSGSVPRFLKGKGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+QGGR+ EIQR+I R+LR+ VDL+ALG I +DCDVIQ Sbjct: 61 AEYAMLPRATHIRNMREAAKGKQGGRTLEIQRLIARSLRAAVDLNALGENMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +AL D L M + LK +AA+S G+ G P+ DLDY Sbjct: 121 ADGGTRTAAITGGCIALADALNWMVKKGKLKK--SPLKQMIAAVSVGIYQGTPVCDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+SG ++E+Q +AE FS + +ML+LAK I L+ QK ++ Sbjct: 179 EDSNAETDTNVVMTESGGLIEIQATAEDGAFSHEQLLSMLSLAKGGIEALVVEQKKALNA 238 Query: 241 E 241 E Sbjct: 239 E 239 >gi|227504000|ref|ZP_03934049.1| ribonuclease PH [Corynebacterium striatum ATCC 6940] gi|227199394|gb|EEI79442.1| ribonuclease PH [Corynebacterium striatum ATCC 6940] Length = 245 Score = 337 bits (866), Expect = 6e-91, Method: Composition-based stats. Identities = 105/238 (44%), Positives = 157/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + +++ GW+TA Sbjct: 9 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDLS LG I +DCDV+QA Sbjct: 69 EYSMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D +++++ S + L VAA+S G++ G +DL Y E Sbjct: 129 DGGTRTASITGAYVALADAIEYLK--SEGVVPGEPLLDPVAAVSVGIIDGQICLDLPYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N VM + G VE+QG+ E F +D +ML++A+ +LI+ QK + Sbjct: 187 DSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRDELNSMLDVAQKGCEELIEAQKAALG 244 >gi|86136764|ref|ZP_01055342.1| ribonuclease PH [Roseobacter sp. MED193] gi|85826088|gb|EAQ46285.1| ribonuclease PH [Roseobacter sp. MED193] Length = 237 Score = 337 bits (866), Expect = 7e-91, Method: Composition-based stats. Identities = 127/237 (53%), Positives = 166/237 (70%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ N+MR +S+ +K+AEGSCL+K G+TH+L TA+LE +VP +I+ + GW+T Sbjct: 1 MRPSNRELNEMRSVSIETGFTKHAEGSCLIKMGETHVLCTASLEPRVPSFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAAAGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITG WVAL + + L V+AISCG+ G P++DLDY Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGEVKI--DPLMDPVSAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NFVMT SG ++EVQ SAE + FS+D +++LA+ +L LQK Sbjct: 179 EDSEAGVDGNFVMTGSGKLIEVQMSAEGSVFSRDQMNQLMDLAEKGTQELAALQKAA 235 >gi|261405343|ref|YP_003241584.1| ribonuclease PH [Paenibacillus sp. Y412MC10] gi|261281806|gb|ACX63777.1| ribonuclease PH [Paenibacillus sp. Y412MC10] Length = 252 Score = 337 bits (866), Expect = 7e-91, Method: Composition-based stats. Identities = 114/239 (47%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR+ +++R ++L+ V+KYAEGS ++ GDT +L TAT++EKVP +++ GW+T Sbjct: 1 MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA+VAL + + + + ++A+IS G+ G ++DL+Y Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAEQHKLAVF--PITDYLASISVGIAGGQALLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT SG VEVQG+ E + FS++ +L L + I +LI+ Q++ + Sbjct: 179 EDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEALG 237 >gi|237743440|ref|ZP_04573921.1| ribonuclease ph [Fusobacterium sp. 7_1] gi|229433219|gb|EEO43431.1| ribonuclease ph [Fusobacterium sp. 7_1] Length = 434 Score = 337 bits (866), Expect = 7e-91, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LIKLQ ++I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|311741212|ref|ZP_07715036.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303382|gb|EFQ79461.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 242 Score = 337 bits (866), Expect = 7e-91, Method: Composition-based stats. Identities = 104/238 (43%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA Sbjct: 66 EYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H++ + + L +AA+S G++ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N VM +SG VE+QG+ E F ++ ML++A+ +LI QK + Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREELNEMLDVAQKGCRELIAAQKAALG 241 >gi|212638433|ref|YP_002314953.1| ribonuclease PH [Anoxybacillus flavithermus WK1] gi|226736883|sp|B7GH12|RNPH_ANOFW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|212559913|gb|ACJ32968.1| Ribonuclease PH [Anoxybacillus flavithermus WK1] Length = 255 Score = 337 bits (866), Expect = 7e-91, Method: Composition-based stats. Identities = 116/242 (47%), Positives = 157/242 (64%), Gaps = 5/242 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR +++R + + K+ EGS L+ GDT ++ TA++E+KVP ++R GWIT Sbjct: 1 MRVDGRTNDELRPVHIEPNYLKHPEGSVLISIGDTKVICTASIEDKVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG + I IDCDVIQ Sbjct: 61 AEYAMIPRATEQRNIREASKGKLSGRTMEIQRLIGRALRSVVDLQKLGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--PIVDLD 178 ADGGTRTA+ITGA+VA+ L M + K + + +AA S G + G I+DL+ Sbjct: 121 ADGGTRTASITGAFVAMTLALGKMVE--EKKLPALPITDFLAATSVG-IDGEHGIILDLN 177 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDS VD N VMT SG VE+QG+ E ATFS + +L +A+ I +LI QK+ + Sbjct: 178 YIEDSKAQVDMNIVMTGSGRFVEIQGTGEEATFSYEQLLDLLTVAEKGIHELIARQKEAL 237 Query: 239 SN 240 + Sbjct: 238 GS 239 >gi|256004871|ref|ZP_05429845.1| ribonuclease PH [Clostridium thermocellum DSM 2360] gi|281416900|ref|ZP_06247920.1| ribonuclease PH [Clostridium thermocellum JW20] gi|255991181|gb|EEU01289.1| ribonuclease PH [Clostridium thermocellum DSM 2360] gi|281408302|gb|EFB38560.1| ribonuclease PH [Clostridium thermocellum JW20] gi|316941052|gb|ADU75086.1| ribonuclease PH [Clostridium thermocellum DSM 1313] Length = 263 Score = 337 bits (866), Expect = 7e-91, Method: Composition-based stats. Identities = 112/240 (46%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR ++ +R + +TR K+AEGS L++ GDT ++ TAT+++KVP + +NT GW+T Sbjct: 2 LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ + GRSQEIQR+IGRALRSVV+L+ LG R+IIIDCDVIQ Sbjct: 62 AEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL D + + D + + +AA+S G++ G ++DL Y Sbjct: 122 ADGGTRTASITGGFVALVDACKKLVD--DGIIEKIPVTDFLAAVSVGIVDGVEMLDLCYM 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D N VMT G +E+Q + E+ F ++ F +L+ A+ I+ LI++QKD + Sbjct: 180 EDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDALGQ 239 >gi|296447435|ref|ZP_06889360.1| ribonuclease PH [Methylosinus trichosporium OB3b] gi|296255055|gb|EFH02157.1| ribonuclease PH [Methylosinus trichosporium OB3b] Length = 237 Score = 337 bits (866), Expect = 7e-91, Method: Composition-based stats. Identities = 135/239 (56%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +S R V++YAEGSCLVKFG+TH+L A+LE+K P W+R GW+T Sbjct: 1 MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ SG+ GR+QEIQR+IGR+LR+V L ALG RQ+++DCDV+Q Sbjct: 61 AEYAMLPRATHTRTRRESSSGKPSGRTQEIQRLIGRSLRAVTHLPALGERQVVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GAW+ALHDC Q M S L+ HVAA+SCG+ P++DLDYG Sbjct: 121 ADGGTRTAAISGAWLALHDCFQWMR--SRSIIKENPLRDHVAAVSCGVCDAGPVIDLDYG 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST DANFV+T G +VEVQ +AE A F++ AML+LA+ I LI++QK I+ Sbjct: 179 EDSTAKTDANFVITGGGGLVEVQSTAEAAVFTEADLSAMLSLARAGIGKLIEMQKAAIA 237 >gi|315227127|ref|ZP_07868914.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105] gi|315119577|gb|EFT82710.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105] Length = 263 Score = 337 bits (866), Expect = 7e-91, Method: Composition-based stats. Identities = 107/242 (44%), Positives = 157/242 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R + +TR ++ EGS L++ G+T +L TAT + VP W R++ GW+T Sbjct: 20 IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T +R RE+V G+ GGR+ EI R+IGR LR +VD+ ALG QI IDCDV+Q Sbjct: 80 AEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + + +VL V+A+S G++ G P++DL Y Sbjct: 140 ADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYV 199 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D N MT SG+ +E+QG+AE FS+ +L+LA+ +L +Q + + Sbjct: 200 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQ 259 Query: 241 EV 242 + Sbjct: 260 AI 261 >gi|23308945|ref|NP_601703.2| ribonuclease PH [Corynebacterium glutamicum ATCC 13032] gi|62391341|ref|YP_226743.1| ribonuclease PH [Corynebacterium glutamicum ATCC 13032] gi|24638170|sp|Q8NMR4|RNPH_CORGL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|21325272|dbj|BAB99894.1| RNase PH [Corynebacterium glutamicum ATCC 13032] gi|41326682|emb|CAF21164.1| PROBABLE RIBONUCLEASE PH [Corynebacterium glutamicum ATCC 13032] Length = 245 Score = 337 bits (866), Expect = 7e-91, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 9 RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE+++G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA Sbjct: 69 EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D ++ +++ L VAA+S G++ G +DL Y E Sbjct: 129 DGGTRTASITGAYVALADAIKVLQE--RGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS DVD N VMT+ G VE+QG+ E TF++ ML+ A+ +L+ QK + Sbjct: 187 DSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDHAEKGCRELVAAQKAALG 244 >gi|319441882|ref|ZP_07991038.1| ribonuclease PH [Corynebacterium variabile DSM 44702] Length = 256 Score = 337 bits (866), Expect = 7e-91, Method: Composition-based stats. Identities = 110/237 (46%), Positives = 155/237 (65%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TR + GS LV+FG+T ++ TA++ E VP + R++ GW+TA Sbjct: 8 RFDGRAVDELRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVSEGVPRFKRDSGEGWLTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ REA+ G+ GR+ EI R+IGR+LR+ VDL ALG + IDCDV+QA Sbjct: 68 EYAMLPSATAERMPREALKGKVKGRTHEISRLIGRSLRAAVDLRALGENTVNIDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L ++ + L VAA+S G++ G P +DL Y E Sbjct: 128 DGGTRTASITGAYVALADALAVLQQ--RGVVPGEPLLDPVAAVSVGVIDGVPCLDLPYPE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS DVD N VMT G VE+QG+ E A FS+ +L+LA+ + DL+ LQ+ + Sbjct: 186 DSRADVDMNVVMTAEGRFVEIQGTGEHAEFSRSELNELLDLAEGGLYDLVDLQRAAL 242 >gi|288956860|ref|YP_003447201.1| ribonuclease PH [Azospirillum sp. B510] gi|288909168|dbj|BAI70657.1| ribonuclease PH [Azospirillum sp. B510] Length = 239 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 131/239 (54%), Positives = 171/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R +SL S+YAEGSC+V+FG+TH+L TA+++E VP +++NT GW+T Sbjct: 1 MRPSGRALDQLRTVSLEPGFSRYAEGSCMVRFGNTHVLCTASVDETVPRFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGRALR+V D SA+G +QI IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRTDREAAKGKQSGRTQEIQRLIGRALRAVTDRSAMGEKQIKIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH QH+ + L VAA+SCG+ G ++DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAFQHLIQIGAL--KTMPLTDQVAAVSCGIYQGNAVLDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFV+T IVE+QG+AE + FS+ F +L LA+ + +L LQK + Sbjct: 179 EDSKAQADANFVLTGKAGIVEIQGTAEESPFSEPQFMELLALARKGVTELAALQKQALG 237 >gi|23099561|ref|NP_693027.1| ribonuclease PH [Oceanobacillus iheyensis HTE831] gi|61216060|sp|Q8EPJ5|RNPH_OCEIH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|22777791|dbj|BAC14062.1| ribonuclease PH (tRNA nucleotidyltransferase) [Oceanobacillus iheyensis HTE831] Length = 244 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R+ NQ+R I++T + EGS L++ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRNDQREVNQLRNINITTNYISHPEGSVLIEMGNTKVICNASIEDRVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVVDL +G R + IDCDVIQ Sbjct: 61 AEYAMLPRATAQRNIRESSKGKVSGRTMEIQRLIGRALRSVVDLDQIGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + + ++ ++AAIS G+L G I+DL+Y Sbjct: 121 ADGGTRTASITGAFVAMSLAFAKLVEAKTLKKT--PIQDYLAAISVGVLTNGTEILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT G VE+QG+ E ATF+ + ML L ++ I L+K+QK++++ Sbjct: 179 EEDSEAAVDMNIVMTGEGEFVEIQGTGEEATFTPNQLQNMLKLGEEGIQQLVKIQKELLA 238 Query: 240 NEV 242 +++ Sbjct: 239 DKL 241 >gi|215488923|ref|YP_002331354.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69] gi|254808587|sp|B7UM50|RNPH_ECO27 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|215266995|emb|CAS11440.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69] gi|323965909|gb|EGB61357.1| ribonuclease PH [Escherichia coli M863] gi|323975137|gb|EGB70242.1| ribonuclease PH [Escherichia coli TW10509] gi|327250769|gb|EGE62471.1| ribonuclease PH [Escherichia coli STEC_7v] Length = 238 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|89098915|ref|ZP_01171795.1| ribonuclease PH [Bacillus sp. NRRL B-14911] gi|89086319|gb|EAR65440.1| ribonuclease PH [Bacillus sp. NRRL B-14911] Length = 277 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 113/243 (46%), Positives = 158/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR++ Q+R I + + EGS L+ G+T ++ TA+++E+VP ++R GWIT Sbjct: 31 MRKDGREQLQLRPIHIETNYLMHPEGSVLISVGNTKVICTASIDERVPPFMRGEGKGWIT 90 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 91 AEYSMLPRATEQRNIREAAKGKITGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 150 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179 ADGGTRTA+ITGA+VA+ ++ + SNK + +AA S G+L ++DL+Y Sbjct: 151 ADGGTRTASITGAFVAMAIAVEKL--YSNKKLSKFPITQFLAATSVGILENKQVVLDLNY 208 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT +G VE+QG+ E ATFS +L A++ + L +QK V+ Sbjct: 209 AEDSKAEVDMNVVMTGNGEFVELQGTGEEATFSASQLTELLKAAEEGVGRLFDIQKQVLG 268 Query: 240 NEV 242 ++ Sbjct: 269 EKI 271 >gi|47168526|pdb|1OYS|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis Length = 245 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 107/243 (44%), Positives = 158/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP++T + +E+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA++A+ + + + + +AAIS G+ ++DL+Y Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N +MT SG VE+QG+ E ATFS++ +L LA+ I +LI QK+V+ Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 Query: 240 NEV 242 + + Sbjct: 239 DSL 241 >gi|206900914|ref|YP_002251052.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12] gi|226736903|sp|B5YEU4|RNPH_DICT6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|206740017|gb|ACI19075.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12] Length = 240 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R +R + +TR+ KY GS L++ G+T ++ T ++EEKVP +++ T GW+T Sbjct: 2 IRIDKRSNVDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R R+ V G GRSQEIQR+IGR+LR+V+D S LG R I ID DVIQ Sbjct: 62 AEYGMLPGSTPERKVRDVVKGVINGRSQEIQRLIGRSLRAVIDFSKLGERTIWIDTDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL+D L+ ++ + +K VAA+S G++ G ++DL Sbjct: 122 ADGGTRTAAITGAFVALYDALEKLKR--DGVIKEIPIKEFVAAVSVGIVDGEILLDLSAN 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED +VD N VMT+SG VE+QG+AE+ F+ + MLNLAK I LI++QK + Sbjct: 180 EDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTYEQLQQMLNLAKQGIMKLIEIQKKALG 238 >gi|94309797|ref|YP_583007.1| ribonuclease PH [Cupriavidus metallidurans CH34] gi|166228306|sp|Q1LQ38|RNPH_RALME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|93353649|gb|ABF07738.1| ribonuclease PH [Cupriavidus metallidurans CH34] Length = 238 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R I+LTR+ +++AEGS L FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRAADALRPITLTRQYTRHAEGSVLSAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG I +DCDV+Q Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTIHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA HD + M + + ++ VAA+S GM+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAFVAAHDAVSAM--LRDGQIKASPIRDFVAAVSVGMVNGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG VEVQG+AE FS+ AM LA+ IA+L++ QK + Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGTPFSRADLDAMTRLAEAGIAELVRHQKQALG 237 >gi|326385028|ref|ZP_08206700.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395] gi|326196242|gb|EGD53444.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395] Length = 252 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 113/240 (47%), Positives = 161/240 (67%), Gaps = 1/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R I TR + + GS LV+FG+T ++ TA++ E VP W R + GW+TA Sbjct: 4 RADGRADDELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASVTEGVPSWRRGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R KRE+V G+ GGR+ EI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYSMLPAATHERSKRESVRGKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ K Q L +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-GAGGKLADPQPLSCIIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V TD+G +VEVQG+ E ATF++ ML++A I +++ Q++V++ Sbjct: 183 DSRAEVDMNVVATDAGTLVEVQGTGEGATFARGTLDKMLDVACAGIENIVAAQREVLAQP 242 >gi|171057396|ref|YP_001789745.1| ribonuclease PH [Leptothrix cholodnii SP-6] gi|170774841|gb|ACB32980.1| ribonuclease PH [Leptothrix cholodnii SP-6] Length = 241 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 121/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R + +TR +K+AEGS L++FGDT +L TA++EEKVP + + GW+TA Sbjct: 5 RPLGRAADALRPVRITRSYTKHAEGSVLIEFGDTQVLCTASVEEKVPPHKKGSGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR V DL+ALG R I+IDCDV+QA Sbjct: 65 EYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRCVFDLAALGERSILIDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA HD +Q + + ++ VAA+S G+L G ++DL+Y E Sbjct: 125 DGGTRTASITGAFVAAHDAVQGL--IAQGKLKRSPIRDFVAAVSVGILDGVALLDLEYVE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+AE FS+ +L L IA+L+ QK + Sbjct: 183 DSACDTDMNIVMTGAGGFVEVQGTAEGVAFSRAEMDQLLALGSAGIAELVAAQKAALG 240 >gi|119475382|ref|ZP_01615735.1| ribonuclease PH [marine gamma proteobacterium HTCC2143] gi|119451585|gb|EAW32818.1| ribonuclease PH [marine gamma proteobacterium HTCC2143] Length = 239 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 124/238 (52%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+REI++TR + +AEGS LV FGDT ++ TA++E+ VP ++R T GWITA Sbjct: 3 RPSGRSIDQLREITITRNFTCHAEGSVLVTFGDTKVICTASVEKNVPHFLRGTGQGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+QGGR+ EIQR+IGR+LR+ VDL LG QI IDCDVIQA Sbjct: 63 EYGMLPRSTGDRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKVLGENQITIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D + M + LK +AA+S G+ G ++DLDY E Sbjct: 123 DGGTRTASITGACVALVDAITAMRE--QGIITGNPLKHMIAAVSVGIYQGTAVLDLDYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N +MT+ G +EVQG+AE +S+ +L LA I LI+ Q+ ++ Sbjct: 181 DSNAETDMNVIMTEQGGFIEVQGTAEGEPYSRIELDQLLGLADAGIQTLIEKQRVALA 238 >gi|146296019|ref|YP_001179790.1| ribonuclease PH [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166228275|sp|A4XI64|RNPH_CALS8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145409595|gb|ABP66599.1| RNAse PH [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 258 Score = 337 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R N++R I +TR KYAEGSCL++ G+T ++ TAT+++KVP + + + GWIT Sbjct: 1 MRQDQRSYNELRPIKITRNFIKYAEGSCLIEMGNTKVIITATIDDKVPPFKKGSGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R+ R GRS EIQR+IGRALR+ ++ ALG R II+DCDVIQ Sbjct: 61 AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIILDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ D + + D +K + + VAA+S G+ G ++DL + Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--DKVIENFPITDFVAAVSVGICDGVEMLDLCFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D G +E+QG+AE F+Q+ F +L L K I +I++Q++V+ Sbjct: 179 EDSKASVDMNLVMNDKGEFIEIQGTAEGGAFTQEQFEKLLELGKQGIQKIIEIQREVLGE 238 Query: 241 E 241 + Sbjct: 239 D 239 >gi|227518377|ref|ZP_03948426.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104] gi|227074055|gb|EEI12018.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104] Length = 451 Score = 337 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R +++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSVVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|153208640|ref|ZP_01946892.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177'] gi|161829800|ref|YP_001596248.1| ribonuclease PH [Coxiella burnetii RSA 331] gi|165919767|ref|ZP_02219510.1| ribonuclease PH [Coxiella burnetii RSA 334] gi|61216043|sp|Q83EL9|RNPH_COXBU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043758|sp|A9KGR9|RNPH_COXBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043759|sp|A9NB33|RNPH_COXBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|120575826|gb|EAX32450.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177'] gi|161761667|gb|ABX77309.1| ribonuclease PH [Coxiella burnetii RSA 331] gi|165916850|gb|EDR35454.1| ribonuclease PH [Coxiella burnetii RSA 334] Length = 237 Score = 337 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R N++R +S T + ++YAEGS LV G+T ++ A++ E VP +++N++ GW+T Sbjct: 1 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL LG I IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI G+ +A+ + L+H++ + LK VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTAAINGSCIAMIEALRHLQR--KGILQTDPLKHKVAAVSVGIYKGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMTD+ +E+QG+AE F A++NLA+ I +I+ Q++ +S Sbjct: 179 EDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEALS 237 >gi|325294219|ref|YP_004280733.1| ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064667|gb|ADY72674.1| Ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699] Length = 235 Score = 337 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 165/239 (69%), Gaps = 7/239 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +T K+AEGSCL++FGDT ++ TA++EEK+P +++ T GWIT Sbjct: 2 IRNDGRKIDELRPVKITVDYIKHAEGSCLIEFGDTKVICTASVEEKIPPFLKGTGQGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ GR GR+QEIQR+IGR++RS VDL+ALG + IDCDVIQ Sbjct: 62 AEYSMLPRATATRTIRESAKGRLTGRTQEIQRLIGRSVRSTVDLTALGEITVWIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL+ L+ ++ +K VAA+S G++ G ++DL+Y Sbjct: 122 ADGGTRTASITGAFVALYRALEKIDKL-------DAVKNFVAAVSVGIVGGEYLLDLNYE 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VM D G VE+QG+AE FS+ +L+L + I LI QK+++ Sbjct: 175 EDSIAEVDMNIVMNDVGEFVELQGTAEGKPFSRKDLEKLLSLGEKGITKLILKQKEILG 233 >gi|300721256|ref|YP_003710526.1| RNase PH [Xenorhabdus nematophila ATCC 19061] gi|297627743|emb|CBJ88269.1| RNase PH [Xenorhabdus nematophila ATCC 19061] Length = 247 Score = 337 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 117/240 (48%), Positives = 161/240 (67%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR Q+R I +TR +K+AEGS LV+FGDT +L A++EE +P +++ GWITA Sbjct: 7 RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQA Sbjct: 67 EYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAI+GA VAL D L + ++ LK VAA+S G++ G + DL+Y E Sbjct: 127 DGGTRTAAISGACVALVDALNKL--VADGKLKESPLKSMVAAVSVGIVGGEGLCDLEYVE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS + D N VM D G ++EVQG+AE FS D ++L+LAK+ + + + Q+D + + Sbjct: 185 DSAAETDMNVVMIDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFEAQRDALKQD 244 >gi|318057177|ref|ZP_07975900.1| ribonuclease PH [Streptomyces sp. SA3_actG] gi|318078066|ref|ZP_07985398.1| ribonuclease PH [Streptomyces sp. SA3_actF] gi|333024799|ref|ZP_08452863.1| putative ribonuclease PH [Streptomyces sp. Tu6071] gi|332744651|gb|EGJ75092.1| putative ribonuclease PH [Streptomyces sp. Tu6071] Length = 241 Score = 337 bits (864), Expect = 9e-91, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 155/239 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + L+ V+A+S G++ P +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V T G VEVQG+AE A F + A+L+LA ADL LQ++ + Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQREALEG 241 >gi|170766572|ref|ZP_02901025.1| ribonuclease PH [Escherichia albertii TW07627] gi|170124010|gb|EDS92941.1| ribonuclease PH [Escherichia albertii TW07627] Length = 238 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|121997764|ref|YP_001002551.1| ribonuclease PH [Halorhodospira halophila SL1] gi|166228286|sp|A1WVN7|RNPH_HALHL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|121589169|gb|ABM61749.1| RNAse PH [Halorhodospira halophila SL1] Length = 238 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +++R IS+ R+ +K+AEGS L+ FGDT +L TA++E +VP W+R GW+T Sbjct: 1 MRPSGRRADELRPISIQRQFTKHAEGSVLIGFGDTRVLCTASVEARVPPWLRGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+ EIQR+IGR+LR+ VDL ALG R +++DCDV+Q Sbjct: 61 AEYGMLPRSTHTRSDREAARGKQQGRTVEIQRLIGRSLRAAVDLQALGERSVVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D L+ + + + L G VA++S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAFVALTDALEGLVR--QRALPASPLHGQVASVSVGVYRGEPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N VM D+G +E+QG+AE F +D ML LA+ + +L++ Q++ ++ Sbjct: 179 EDGEAETDMNVVMNDAGAFIELQGTAEGHAFRRDELDRMLALAEKGVGELLQHQQEALAT 238 >gi|260219850|emb|CBA26795.1| Ribonuclease PH [Curvibacter putative symbiont of Hydra magnipapillata] Length = 242 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R + +R + +TR + +AEGS L++FG+T +L TA++EEKVP R + GW+T Sbjct: 5 VRQGARAADALRPVRITRHYTMHAEGSVLIEFGNTKVLCTASVEEKVPPHKRGSGEGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+QEIQR+IGR+LR+V DL LG R I +DCDVIQ Sbjct: 65 AEYGMLPRATHSRSDREAARGKQTGRTQEIQRLIGRSLRAVFDLKKLGERTIQLDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA D + + + + VAAIS G++ G P++DL+Y Sbjct: 125 ADGGTRTAAITGAFVAAQDAVNGLLAAGKITET--PITAAVAAISVGIVEGTPLLDLEYT 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT +GH VEVQG+AE TF++ +L LA+ + +L+ LQ+ V+S Sbjct: 183 EDSACDTDMNVVMTGAGHFVEVQGTAEGVTFTRAEMDQLLTLAEKGVGELMLLQQQVLSK 242 >gi|124267890|ref|YP_001021894.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1] gi|124260665|gb|ABM95659.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1] Length = 241 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R + +R +++TRR +K+AEGS L+ FGDT +L TA++EEKVP R + GW+TA Sbjct: 5 RTQARAADALRPLTITRRYTKHAEGSVLIAFGDTKVLCTASVEEKVPPHKRGSGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERSIHLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VA HD + + + + ++ VAA+S G++ G P++DL+Y E Sbjct: 125 DGGTRTAAITGAYVAAHDAVTWL--LAQGKIGASPIREPVAAVSVGIVQGTPLLDLEYIE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VMT +GH +EVQG+AE A FS+ +L LA+ I L+ Q + + Sbjct: 183 DSACDTDMNVVMTGAGHFIEVQGTAEGAAFSRAEMDRLLALAEQGIRTLVAAQAAALKD 241 >gi|146337341|ref|YP_001202389.1| ribonuclease PH [Bradyrhizobium sp. ORS278] gi|166228267|sp|A4YJR3|RNPH_BRASO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|146190147|emb|CAL74139.1| RNase PH [Bradyrhizobium sp. ORS278] Length = 237 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 137/239 (57%), Positives = 182/239 (76%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++MR +SL R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GWIT Sbjct: 1 MRPSRRAPDEMRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+ EIQR+IGR+LR+ +DL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL DC++ M+ + ++VL+ +VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALADCIRWMK--ARNMIKTEVLRTNVAAVSCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFVMT G I+EVQG+AE+ FS+ F A++ LA+ + L+ LQK ++ Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSEAEFLALMALARKGVGRLVDLQKMAVA 237 >gi|228993220|ref|ZP_04153141.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442] gi|228999269|ref|ZP_04158849.1| Ribonuclease PH [Bacillus mycoides Rock3-17] gi|229006824|ref|ZP_04164457.1| Ribonuclease PH [Bacillus mycoides Rock1-4] gi|228754446|gb|EEM03858.1| Ribonuclease PH [Bacillus mycoides Rock1-4] gi|228760466|gb|EEM09432.1| Ribonuclease PH [Bacillus mycoides Rock3-17] gi|228766546|gb|EEM15188.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442] Length = 245 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 115/243 (47%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GRQ ++R I L K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGRQAAELRNIHLHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEDQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT GH VEVQG+ E ATFS+ +L+ A++ I LI+ QK+ + Sbjct: 179 AEDSQADVDMNVIMTGKGHFVEVQGTGEEATFSRAELNELLDAAENGILQLIEKQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|198284080|ref|YP_002220401.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667606|ref|YP_002426735.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248601|gb|ACH84194.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519819|gb|ACK80405.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270] Length = 242 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 123/236 (52%), Positives = 162/236 (68%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR + +R + +TR +K+AEGS L+ GDT +L TA++EEKVP ++R GW+T Sbjct: 2 IRPSGRNADALRPVQVTRNFTKHAEGSVLIACGDTKVLCTASVEEKVPPFLRGAGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T RV RE+ GR GGR+ EIQR+IGR+LR+ VDL ALG R I +DCDV+Q Sbjct: 62 AEYSMLPRATRERVARESAKGRIGGRTHEIQRLIGRSLRAAVDLQALGERTIWVDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +A+ D +QH+ + L+ VAA+S G+ G ++DLDY Sbjct: 122 ADGGTRTASITGACLAVADAVQHLRTVGQL--RNNPLRDWVAAVSVGVYQGQAVLDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS DVD N VMT +G VEVQG+AE A FS + ML LA+ IA+L+ Q Sbjct: 180 EDSNADVDMNVVMTGAGAFVEVQGTAEGAVFSAEQMAEMLALARKGIAELVARQHQ 235 >gi|163742618|ref|ZP_02150004.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10] gi|161384203|gb|EDQ08586.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10] Length = 237 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 127/237 (53%), Positives = 167/237 (70%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRNLDQMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKTGEVKI--DPLVDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NF+MT SG ++EVQ SAE + FS++ +++LA A+L +LQK Sbjct: 179 EDSEAGVDGNFIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQKAA 235 >gi|256026996|ref|ZP_05440830.1| ribonuclease PH [Fusobacterium sp. D11] gi|289764980|ref|ZP_06524358.1| ribonuclease ph [Fusobacterium sp. D11] gi|289716535|gb|EFD80547.1| ribonuclease ph [Fusobacterium sp. D11] Length = 428 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M G +EVQG+ E +TF++ +L+LA++ I LIKLQ ++I+ Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|209364175|ref|YP_001425114.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111] gi|212213192|ref|YP_002304128.1| ribonuclease PH [Coxiella burnetii CbuG_Q212] gi|212218134|ref|YP_002304921.1| ribonuclease PH [Coxiella burnetii CbuK_Q154] gi|215918932|ref|NP_819342.2| ribonuclease PH [Coxiella burnetii RSA 493] gi|206583817|gb|AAO89856.2| ribonuclease PH [Coxiella burnetii RSA 493] gi|207082108|gb|ABS77511.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111] gi|212011602|gb|ACJ18983.1| ribonuclease PH [Coxiella burnetii CbuG_Q212] gi|212012396|gb|ACJ19776.1| ribonuclease PH [Coxiella burnetii CbuK_Q154] Length = 239 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R N++R +S T + ++YAEGS LV G+T ++ A++ E VP +++N++ GW+T Sbjct: 3 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQGWLT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL LG I IDCDVIQ Sbjct: 63 AEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI G+ +A+ + L+H++ + LK VAA+S G+ G P++DLDY Sbjct: 123 ADGGTRTAAINGSCIAMIEALRHLQR--KGILQTDPLKHKVAAVSVGIYKGVPVLDLDYA 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VMTD+ +E+QG+AE F A++NLA+ I +I+ Q++ +S Sbjct: 181 EDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEALS 239 >gi|159046003|ref|YP_001534797.1| ribonuclease PH [Dinoroseobacter shibae DFL 12] gi|189043761|sp|A8LPD1|RNPH_DINSH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157913763|gb|ABV95196.1| ribonuclease PH [Dinoroseobacter shibae DFL 12] Length = 237 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 129/237 (54%), Positives = 173/237 (72%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ ++MR +S+ +++AEGSCL+ G+T +L TA++EE+VP ++RNT GW+T Sbjct: 1 MRPSGRQTHEMRGVSIETGFTRHAEGSCLISMGETRVLCTASVEERVPPFLRNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+ VD ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGAWVAL + + + + L HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGAWVALRLAVNKLMKAGDII--TDPLTDHVAAVSCGLYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS DANFVMT SG ++EVQGSAE A FS++ +++LA+ +A+L+ QK Sbjct: 179 EDSEAGTDANFVMTGSGGLIEVQGSAEGAPFSRNALNTLMDLAEVGVAELVAAQKAA 235 >gi|153876824|ref|ZP_02003946.1| ribonuclease PH [Beggiatoa sp. PS] gi|152066712|gb|EDN66054.1| ribonuclease PH [Beggiatoa sp. PS] Length = 240 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 123/242 (50%), Positives = 173/242 (71%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N++R+I+ TR + +AEGS L +FG T ++ +++E+VP +I++ K GW+T Sbjct: 1 MRPSGRAPNELRQINFTRHYTCHAEGSVLAEFGRTKVICNVSIDERVPRFIKDKKSGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA GRQGGR+ EIQR+IGR+LR+VV+L ALG R + IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMSREASRGRQGGRTLEIQRLIGRSLRAVVNLEALGERTVNIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+++AL D +QH+ + + G +AA+S G+ G PI+DLDY Sbjct: 121 ADGGTRTAAITGSYIALVDAMQHL--LKKRLIRKNPIHGAIAAVSVGIYKGIPILDLDYN 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N +M D+ VE+QG+AE F QD ML+LAK+ + L++ Q V+++ Sbjct: 179 EDSDAETDMNIIMNDAFAYVEIQGTAEGHAFRQDELQTMLSLAKEGTSQLLEKQNAVLND 238 Query: 241 EV 242 E+ Sbjct: 239 EL 240 >gi|311069329|ref|YP_003974252.1| ribonuclease PH [Bacillus atrophaeus 1942] gi|310869846|gb|ADP33321.1| ribonuclease PH [Bacillus atrophaeus 1942] Length = 245 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 110/241 (45%), Positives = 155/241 (64%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA++A+ + + + +AAIS G+ ++DL+Y Sbjct: 121 ADGGTRTASITGAFLAMGIAIGKLVKSG--VLKKTPVTDFLAAISVGIDKEQGLLLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N +MT SG VE+QG+ E ATFS++ +L+LA+ I +LI QK V+ Sbjct: 179 TEDSAAEVDMNVIMTGSGRFVELQGTGEEATFSREDLDGLLSLAEKGIQELIDKQKAVLG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|147677126|ref|YP_001211341.1| ribonuclease PH [Pelotomaculum thermopropionicum SI] gi|146273223|dbj|BAF58972.1| RNase PH [Pelotomaculum thermopropionicum SI] Length = 257 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 124/235 (52%), Positives = 166/235 (70%), Gaps = 2/235 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R + +TR K+AEGS L++ GDT ++ TAT+E+KVP++++ GWITA Sbjct: 3 RIDGRKPDQLRPVRITRNYIKHAEGSVLIEIGDTRVICTATVEDKVPLFLKGEGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R REA G+ GGR+ EIQR+IGR+LRSVVDL+ALG R + +DCDVIQA Sbjct: 63 EYGMLPRSTGVRTPREAARGKIGGRTCEIQRLIGRSLRSVVDLAALGERTVWLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L +++ ++ + VAA S G L G +DL Y E Sbjct: 123 DGGTRTASITGAFVALVDALNRLKEQGQIDRI--PVSDFVAATSVGRLNGRIYLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 DS +VD N VMT SG VEVQG+ E A+F++ +M+ LA I+ LI QK+ Sbjct: 181 DSAAEVDMNIVMTGSGRFVEVQGTGEEASFTRQEMDSMIELAAQGISRLILHQKE 235 >gi|15804184|ref|NP_290223.1| ribonuclease PH [Escherichia coli O157:H7 EDL933] gi|15833772|ref|NP_312545.1| ribonuclease PH [Escherichia coli O157:H7 str. Sakai] gi|74314123|ref|YP_312542.1| ribonuclease PH [Shigella sonnei Ss046] gi|82546006|ref|YP_409953.1| ribonuclease PH [Shigella boydii Sb227] gi|117625915|ref|YP_859238.1| ribonuclease PH [Escherichia coli APEC O1] gi|157158506|ref|YP_001465123.1| ribonuclease PH [Escherichia coli E24377A] gi|161486067|ref|NP_756329.2| ribonuclease PH [Escherichia coli CFT073] gi|162138338|ref|YP_543146.2| ribonuclease PH [Escherichia coli UTI89] gi|168748709|ref|ZP_02773731.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113] gi|168753467|ref|ZP_02778474.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401] gi|168759740|ref|ZP_02784747.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501] gi|168766063|ref|ZP_02791070.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486] gi|168772391|ref|ZP_02797398.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196] gi|168779798|ref|ZP_02804805.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076] gi|168785519|ref|ZP_02810526.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869] gi|168798588|ref|ZP_02823595.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508] gi|170680501|ref|YP_001745943.1| ribonuclease PH [Escherichia coli SMS-3-5] gi|187733771|ref|YP_001882340.1| ribonuclease PH [Shigella boydii CDC 3083-94] gi|191167816|ref|ZP_03029622.1| ribonuclease PH [Escherichia coli B7A] gi|193063848|ref|ZP_03044935.1| ribonuclease PH [Escherichia coli E22] gi|193070385|ref|ZP_03051327.1| ribonuclease PH [Escherichia coli E110019] gi|194430060|ref|ZP_03062565.1| ribonuclease PH [Escherichia coli B171] gi|194431006|ref|ZP_03063299.1| ribonuclease PH [Shigella dysenteriae 1012] gi|195936204|ref|ZP_03081586.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4024] gi|208807479|ref|ZP_03249816.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206] gi|208812475|ref|ZP_03253804.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045] gi|208819811|ref|ZP_03260131.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042] gi|209399306|ref|YP_002273121.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115] gi|209921114|ref|YP_002295198.1| ribonuclease PH [Escherichia coli SE11] gi|217324320|ref|ZP_03440404.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588] gi|227883811|ref|ZP_04001616.1| ribonuclease PH [Escherichia coli 83972] gi|237703414|ref|ZP_04533895.1| ribonuclease PH [Escherichia sp. 3_2_53FAA] gi|254795598|ref|YP_003080435.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359] gi|256021353|ref|ZP_05435218.1| ribonuclease PH [Shigella sp. D9] gi|256025627|ref|ZP_05439492.1| ribonuclease PH [Escherichia sp. 4_1_40B] gi|260846592|ref|YP_003224370.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009] gi|261224174|ref|ZP_05938455.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK2000] gi|261254784|ref|ZP_05947317.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK966] gi|291285014|ref|YP_003501832.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615] gi|293407266|ref|ZP_06651190.1| rph [Escherichia coli FVEC1412] gi|293413077|ref|ZP_06655745.1| ribonuclease PH [Escherichia coli B354] gi|293417104|ref|ZP_06659731.1| ribonuclease PH [Escherichia coli B185] gi|293463967|ref|ZP_06664381.1| ribonuclease PH [Escherichia coli B088] gi|298383012|ref|ZP_06992607.1| ribonuclease PH [Escherichia coli FVEC1302] gi|300815118|ref|ZP_07095343.1| ribonuclease PH [Escherichia coli MS 107-1] gi|300822413|ref|ZP_07102553.1| ribonuclease PH [Escherichia coli MS 119-7] gi|300898578|ref|ZP_07116908.1| ribonuclease PH [Escherichia coli MS 198-1] gi|300919790|ref|ZP_07136265.1| ribonuclease PH [Escherichia coli MS 115-1] gi|300939243|ref|ZP_07153922.1| ribonuclease PH [Escherichia coli MS 21-1] gi|300948023|ref|ZP_07162164.1| ribonuclease PH [Escherichia coli MS 116-1] gi|300954463|ref|ZP_07166913.1| ribonuclease PH [Escherichia coli MS 175-1] gi|300984904|ref|ZP_07177192.1| ribonuclease PH [Escherichia coli MS 45-1] gi|301018972|ref|ZP_07183195.1| ribonuclease PH [Escherichia coli MS 69-1] gi|301028402|ref|ZP_07191648.1| ribonuclease PH [Escherichia coli MS 196-1] gi|301047433|ref|ZP_07194512.1| ribonuclease PH [Escherichia coli MS 185-1] gi|301644309|ref|ZP_07244311.1| ribonuclease PH [Escherichia coli MS 146-1] gi|307140341|ref|ZP_07499697.1| ribonuclease PH [Escherichia coli H736] gi|307314272|ref|ZP_07593880.1| ribonuclease PH [Escherichia coli W] gi|309797616|ref|ZP_07692004.1| ribonuclease PH [Escherichia coli MS 145-7] gi|331644361|ref|ZP_08345490.1| tRNA nucleotidyltransferase [Escherichia coli H736] gi|331649458|ref|ZP_08350544.1| tRNA nucleotidyltransferase [Escherichia coli M605] gi|331655275|ref|ZP_08356274.1| tRNA nucleotidyltransferase [Escherichia coli M718] gi|331659963|ref|ZP_08360901.1| tRNA nucleotidyltransferase [Escherichia coli TA206] gi|331665268|ref|ZP_08366169.1| tRNA nucleotidyltransferase [Escherichia coli TA143] gi|331670483|ref|ZP_08371322.1| tRNA nucleotidyltransferase [Escherichia coli TA271] gi|331675122|ref|ZP_08375879.1| tRNA nucleotidyltransferase [Escherichia coli TA280] gi|331679734|ref|ZP_08380404.1| tRNA nucleotidyltransferase [Escherichia coli H591] gi|331685306|ref|ZP_08385892.1| tRNA nucleotidyltransferase [Escherichia coli H299] gi|332282587|ref|ZP_08395000.1| ribonuclease PH [Shigella sp. D9] gi|54039263|sp|P66680|RNPH_ECO57 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|54042177|sp|P66679|RNPH_ECOL6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123558299|sp|Q31UY3|RNPH_SHIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123615832|sp|Q3YW05|RNPH_SHISS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228279|sp|A1AHH4|RNPH_ECOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166991083|sp|A7ZTJ4|RNPH_ECO24 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736905|sp|B5YWE1|RNPH_ECO5E RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736906|sp|B6I3M0|RNPH_ECOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736907|sp|B1LK80|RNPH_ECOSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736941|sp|B2TTV7|RNPH_SHIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|12518399|gb|AAG58787.1|AE005591_11 RNase PH [Escherichia coli O157:H7 str. EDL933] gi|13363993|dbj|BAB37941.1| RNase PH [Escherichia coli O157:H7 str. Sakai] gi|73857600|gb|AAZ90307.1| RNase PH [Shigella sonnei Ss046] gi|81247417|gb|ABB68125.1| RNase PH [Shigella boydii Sb227] gi|115515039|gb|ABJ03114.1| ribonuclease PH [Escherichia coli APEC O1] gi|157080536|gb|ABV20244.1| ribonuclease PH [Escherichia coli E24377A] gi|170518219|gb|ACB16397.1| ribonuclease PH [Escherichia coli SMS-3-5] gi|187430763|gb|ACD10037.1| ribonuclease PH [Shigella boydii CDC 3083-94] gi|187771578|gb|EDU35422.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196] gi|188016889|gb|EDU55011.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113] gi|189002636|gb|EDU71622.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076] gi|189359228|gb|EDU77647.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401] gi|189364689|gb|EDU83108.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486] gi|189369513|gb|EDU87929.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501] gi|189374286|gb|EDU92702.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869] gi|189378769|gb|EDU97185.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508] gi|190902159|gb|EDV61902.1| ribonuclease PH [Escherichia coli B7A] gi|192930563|gb|EDV83170.1| ribonuclease PH [Escherichia coli E22] gi|192956324|gb|EDV86785.1| ribonuclease PH [Escherichia coli E110019] gi|194411887|gb|EDX28204.1| ribonuclease PH [Escherichia coli B171] gi|194420461|gb|EDX36537.1| ribonuclease PH [Shigella dysenteriae 1012] gi|208727280|gb|EDZ76881.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206] gi|208733752|gb|EDZ82439.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045] gi|208739934|gb|EDZ87616.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042] gi|209160706|gb|ACI38139.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115] gi|209754598|gb|ACI75606.1| RNase PH [Escherichia coli] gi|209754600|gb|ACI75607.1| RNase PH [Escherichia coli] gi|209754602|gb|ACI75608.1| RNase PH [Escherichia coli] gi|209754604|gb|ACI75609.1| RNase PH [Escherichia coli] gi|209754606|gb|ACI75610.1| RNase PH [Escherichia coli] gi|209914373|dbj|BAG79447.1| ribonuclease PH [Escherichia coli SE11] gi|217320541|gb|EEC28965.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588] gi|222035351|emb|CAP78096.1| ribonuclease PH [Escherichia coli LF82] gi|226902678|gb|EEH88937.1| ribonuclease PH [Escherichia sp. 3_2_53FAA] gi|227839089|gb|EEJ49555.1| ribonuclease PH [Escherichia coli 83972] gi|254594998|gb|ACT74359.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359] gi|257761739|dbj|BAI33236.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009] gi|281180689|dbj|BAI57019.1| ribonuclease PH [Escherichia coli SE15] gi|284923676|emb|CBG36773.1| ribonuclease PH [Escherichia coli 042] gi|290764887|gb|ADD58848.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615] gi|291321599|gb|EFE61035.1| ribonuclease PH [Escherichia coli B088] gi|291426077|gb|EFE99111.1| rph [Escherichia coli FVEC1412] gi|291431135|gb|EFF04128.1| ribonuclease PH [Escherichia coli B185] gi|291468724|gb|EFF11217.1| ribonuclease PH [Escherichia coli B354] gi|294492761|gb|ADE91517.1| ribonuclease PH [Escherichia coli IHE3034] gi|298276848|gb|EFI18366.1| ribonuclease PH [Escherichia coli FVEC1302] gi|299878513|gb|EFI86724.1| ribonuclease PH [Escherichia coli MS 196-1] gi|300300641|gb|EFJ57026.1| ribonuclease PH [Escherichia coli MS 185-1] gi|300318542|gb|EFJ68326.1| ribonuclease PH [Escherichia coli MS 175-1] gi|300357741|gb|EFJ73611.1| ribonuclease PH [Escherichia coli MS 198-1] gi|300399466|gb|EFJ83004.1| ribonuclease PH [Escherichia coli MS 69-1] gi|300408333|gb|EFJ91871.1| ribonuclease PH [Escherichia coli MS 45-1] gi|300413143|gb|EFJ96453.1| ribonuclease PH [Escherichia coli MS 115-1] gi|300452418|gb|EFK16038.1| ribonuclease PH [Escherichia coli MS 116-1] gi|300455842|gb|EFK19335.1| ribonuclease PH [Escherichia coli MS 21-1] gi|300525060|gb|EFK46129.1| ribonuclease PH [Escherichia coli MS 119-7] gi|300532010|gb|EFK53072.1| ribonuclease PH [Escherichia coli MS 107-1] gi|301077347|gb|EFK92153.1| ribonuclease PH [Escherichia coli MS 146-1] gi|306906095|gb|EFN36614.1| ribonuclease PH [Escherichia coli W] gi|307555742|gb|ADN48517.1| ribonuclease PH [Escherichia coli ABU 83972] gi|307628716|gb|ADN73020.1| ribonuclease PH [Escherichia coli UM146] gi|308118803|gb|EFO56065.1| ribonuclease PH [Escherichia coli MS 145-7] gi|312948204|gb|ADR29031.1| ribonuclease PH [Escherichia coli O83:H1 str. NRG 857C] gi|315062931|gb|ADT77258.1| ribonuclease PH [Escherichia coli W] gi|315285457|gb|EFU44902.1| ribonuclease PH [Escherichia coli MS 110-3] gi|315296969|gb|EFU56249.1| ribonuclease PH [Escherichia coli MS 16-3] gi|315618654|gb|EFU99240.1| ribonuclease PH [Escherichia coli 3431] gi|320176298|gb|EFW51358.1| Ribonuclease PH [Shigella dysenteriae CDC 74-1112] gi|320179979|gb|EFW54921.1| Ribonuclease PH [Shigella boydii ATCC 9905] gi|320186817|gb|EFW61537.1| Ribonuclease PH [Shigella flexneri CDC 796-83] gi|320191306|gb|EFW65956.1| Ribonuclease PH [Escherichia coli O157:H7 str. EC1212] gi|320193850|gb|EFW68483.1| Ribonuclease PH [Escherichia coli WV_060327] gi|320639550|gb|EFX09158.1| ribonuclease PH [Escherichia coli O157:H7 str. G5101] gi|320644989|gb|EFX14019.1| ribonuclease PH [Escherichia coli O157:H- str. 493-89] gi|320650256|gb|EFX18745.1| ribonuclease PH [Escherichia coli O157:H- str. H 2687] gi|320661342|gb|EFX28766.1| ribonuclease PH [Escherichia coli O55:H7 str. USDA 5905] gi|320666356|gb|EFX33355.1| ribonuclease PH [Escherichia coli O157:H7 str. LSU-61] gi|323160749|gb|EFZ46685.1| ribonuclease PH [Escherichia coli E128010] gi|323166871|gb|EFZ52610.1| ribonuclease PH [Shigella sonnei 53G] gi|323182671|gb|EFZ68074.1| ribonuclease PH [Escherichia coli 1357] gi|323189449|gb|EFZ74730.1| ribonuclease PH [Escherichia coli RN587/1] gi|323376476|gb|ADX48744.1| ribonuclease PH [Escherichia coli KO11] gi|323934812|gb|EGB31194.1| ribonuclease PH [Escherichia coli E1520] gi|323939598|gb|EGB35804.1| ribonuclease PH [Escherichia coli E482] gi|323949882|gb|EGB45766.1| ribonuclease PH [Escherichia coli H252] gi|323954817|gb|EGB50597.1| ribonuclease PH [Escherichia coli H263] gi|324008099|gb|EGB77318.1| ribonuclease PH [Escherichia coli MS 57-2] gi|324019680|gb|EGB88899.1| ribonuclease PH [Escherichia coli MS 117-3] gi|324111538|gb|EGC05519.1| ribonuclease PH [Escherichia fergusonii B253] gi|324116018|gb|EGC09944.1| ribonuclease PH [Escherichia coli E1167] gi|326337358|gb|EGD61193.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1044] gi|326339883|gb|EGD63690.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1125] gi|330909705|gb|EGH38219.1| ribonuclease PH [Escherichia coli AA86] gi|331036655|gb|EGI08881.1| tRNA nucleotidyltransferase [Escherichia coli H736] gi|331041956|gb|EGI14100.1| tRNA nucleotidyltransferase [Escherichia coli M605] gi|331047290|gb|EGI19368.1| tRNA nucleotidyltransferase [Escherichia coli M718] gi|331053178|gb|EGI25211.1| tRNA nucleotidyltransferase [Escherichia coli TA206] gi|331057778|gb|EGI29764.1| tRNA nucleotidyltransferase [Escherichia coli TA143] gi|331062545|gb|EGI34465.1| tRNA nucleotidyltransferase [Escherichia coli TA271] gi|331068031|gb|EGI39429.1| tRNA nucleotidyltransferase [Escherichia coli TA280] gi|331072906|gb|EGI44231.1| tRNA nucleotidyltransferase [Escherichia coli H591] gi|331077677|gb|EGI48889.1| tRNA nucleotidyltransferase [Escherichia coli H299] gi|332084483|gb|EGI89678.1| ribonuclease PH [Shigella dysenteriae 155-74] gi|332084823|gb|EGI90006.1| ribonuclease PH [Shigella boydii 5216-82] gi|332089330|gb|EGI94434.1| ribonuclease PH [Shigella boydii 3594-74] gi|332104939|gb|EGJ08285.1| ribonuclease PH [Shigella sp. D9] Length = 238 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|294791355|ref|ZP_06756512.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304] gi|294457826|gb|EFG26180.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304] Length = 259 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 111/242 (45%), Positives = 157/242 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R +++TR ++ EGS L++ G T +L TAT + VP W +++ GW+T Sbjct: 17 IRADGRAVDQLRPVTITRGWTQAPEGSVLIECGQTRVLCTATFSQGVPRWRKDSGLGWVT 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T +R RE+V G+ GGR+ EI R+IGR LR +VDL ALG I IDCDV+Q Sbjct: 77 AEYAMIPRATADRTDRESVRGKIGGRTHEISRLIGRVLRGIVDLGALGENMIQIDCDVLQ 136 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + +VL V+A+S G++ G P++DL Y Sbjct: 137 ADGGTRTASITGAYVALADAVSWAKKNKKIKAAKRVLLDQVSAVSVGIINGTPMLDLPYT 196 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D N MT SG +E+QG+AE FS+D +L+LA+ L +LQK + Sbjct: 197 EDSQAMTDMNVAMTASGKFIEIQGTAEHRPFSRDELNTLLDLAQKGNTQLQELQKQALKK 256 Query: 241 EV 242 E+ Sbjct: 257 EI 258 >gi|77165901|ref|YP_344426.1| ribonuclease PH [Nitrosococcus oceani ATCC 19707] gi|123593634|sp|Q3J8F0|RNPH_NITOC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|76884215|gb|ABA58896.1| RNAse PH [Nitrosococcus oceani ATCC 19707] Length = 239 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +++R I TR ++YAEGS LV+FG+T ++ A++E+++P +++ T GWIT Sbjct: 1 MRPSGRAPHELRPIHFTRHYTRYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST NR+ REA GRQGGR+ EIQR IGRALR+VVDL+ALG + +DCDVIQ Sbjct: 61 AEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRFIGRALRAVVDLAALGEVTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VAL D + + + G +A+IS G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGSYVALVDAIN--NRLKKRIITHSPIHGQLASISVGIYEGTPVLDLDYR 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST + D N VM ++G +E+QG+AE F + AML+LAK I L+ Q +V++ Sbjct: 179 EDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLDLAKSGINTLLAQQTEVLAK 238 >gi|332978052|gb|EGK14790.1| tRNA nucleotidyltransferase [Desmospora sp. 8437] Length = 289 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 113/238 (47%), Positives = 157/238 (65%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GRQ N++R++ + K+AEGS L+ GDT ++ TA++EE+VP ++R + GW+T Sbjct: 31 LRVDGRQYNELRKVEMISDYIKHAEGSVLMCVGDTKVICTASVEERVPPFLRGSGKGWVT 90 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+ G+ GGR+ EIQR+IGR+LRSV+ L LG R I +DCDVIQ Sbjct: 91 AEYSMLPRATQSRTIRESSKGKVGGRTMEIQRLIGRSLRSVIQLDRLGERTIWLDCDVIQ 150 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA + + S + +AA S G++ G P +DL Y Sbjct: 151 ADGGTRTASITGAFVAAAQAIHGLVKSGAL--DSVPITDFLAATSVGIVDGQPCLDLCYE 208 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT SG VE+QG+ E + F+ + +L LA LI+LQKDV+ Sbjct: 209 EDSKAKVDMNVVMTGSGKYVEIQGTGEESPFTPEELHQLLALAGHGTEQLIRLQKDVL 266 >gi|332529685|ref|ZP_08405639.1| ribonuclease ph [Hylemonella gracilis ATCC 19624] gi|332040706|gb|EGI77078.1| ribonuclease ph [Hylemonella gracilis ATCC 19624] Length = 254 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 119/243 (48%), Positives = 163/243 (67%), Gaps = 6/243 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R +Q+R + +TR + +AEGS L++FG T +L TA++EE+VP + + GW+T Sbjct: 13 LRADQRAADQLRAVRITRHYTVHAEGSVLIEFGRTRVLCTASVEERVPPHKKGSGEGWVT 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+Q Sbjct: 73 AEYGMLPRSTHTRSDREAARGKQNGRTQEIQRLIGRSLRAVFDLKALGERTITLDCDVLQ 132 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVA D + + + + + VAA+S G++ G ++DL+Y Sbjct: 133 ADGGTRTAAITGAWVAAQDAVNTL--IAQGKLTTSPIIAPVAAVSVGIVEGQALLDLEYT 190 Query: 181 EDSTIDVDANFVMT----DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS D D N VMT GH +EVQG+AE A FS+ A+L LA+ I +L+ LQ+ Sbjct: 191 EDSACDTDMNVVMTVNAAGEGHYIEVQGTAEGAAFSRKEMDALLALAEKGIHELVALQRQ 250 Query: 237 VIS 239 ++ Sbjct: 251 ALA 253 >gi|210621777|ref|ZP_03292806.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275] gi|210154541|gb|EEA85547.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275] Length = 449 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 116/237 (48%), Positives = 157/237 (66%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL R +++R + +T +KYA GS L++ G+T ++ TAT+E+KVP ++RNT GWI A Sbjct: 3 RLGNRANDEIRPVKITTNFTKYAAGSVLIEMGETKVICTATVEDKVPPFLRNTGTGWINA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R R++V G+ GR+QEIQR+IGRA+RSV++L LG R I +DCDVIQA Sbjct: 63 EYSMLPSSTQQRKIRDSVRGKIDGRTQEIQRLIGRAIRSVIELDLLGERTIWVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG +VA + + +L +K V+AIS G+L I+DL Y E Sbjct: 123 DGGTRTASITGGFVAAAQAIYGLYQNKEIKKL--PIKNFVSAISAGVLNDEHILDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS VD NFVMTD G VEVQG+ E A FS++ +L L + +LIK+Q+ I Sbjct: 181 DSAAKVDMNFVMTDKGEFVEVQGTGEEAPFSREDLNKLLELGEKGNKELIKIQRAAI 237 >gi|91205422|ref|YP_537777.1| ribonuclease PH [Rickettsia bellii RML369-C] gi|122425711|sp|Q1RIX6|RNPH_RICBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|91068966|gb|ABE04688.1| Ribonuclease PH [Rickettsia bellii RML369-C] Length = 239 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +A+ + VP ++RN GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST R KREAV G+Q GR+QEIQR+IGR +RS++DL LG RQI IDCDVI Sbjct: 61 AEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L VAA+SCG+ PI+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRILKVNPLINQVAAVSCGIYKDQPILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD+NFV +G+++E+QG+AE+ FS++ F ML LAK +A+L KLQ V+ N Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQVLLN 238 >gi|312113394|ref|YP_004010990.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100] gi|311218523|gb|ADP69891.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100] Length = 237 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 136/235 (57%), Positives = 174/235 (74%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ +R +S R S +AEGSCL+KFG+TH+L TA+LE++VP W++ GWIT Sbjct: 1 MRPSKRQAGDLRPVSFQRAFSHHAEGSCLIKFGNTHVLCTASLEDRVPPWLKGQGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G Q GRSQEIQR+IGR+LR+VVDL ALG RQI++DCDV+Q Sbjct: 61 AEYGMLPRATSDRTRREATTGHQSGRSQEIQRLIGRSLRAVVDLQALGERQIMVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC Q M + + +K +VAAISCG+ G ++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCFQWMR--ARDMLRGEPMKDNVAAISCGIYKGEAVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + DANFV T G IVE+Q +AE+ FS++ + LAK IA+L+ LQK Sbjct: 179 EDSDAEADANFVFTGKGQIVEIQATAEKGAFSEERMAELTALAKKGIAELVNLQK 233 >gi|295836838|ref|ZP_06823771.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74] gi|197697479|gb|EDY44412.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74] Length = 241 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 114/238 (47%), Positives = 154/238 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + L+ V+A+S G++ P +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIIDSVPYLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N V T G VEVQG+AE A F + A+L+LA DL LQ++ + Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCTDLAALQREALE 240 >gi|254559085|ref|YP_003066180.1| ribonuclease PH [Methylobacterium extorquens DM4] gi|254266363|emb|CAX22127.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Methylobacterium extorquens DM4] Length = 237 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 136/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC M + LK HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFV+T G IVEVQG+AE F+ + F +L LAK +A L++LQ+ I+ Sbjct: 179 EDSAADTDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237 >gi|254303318|ref|ZP_04970676.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323510|gb|EDK88760.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 434 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ ++ R+I + + V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRKFDEERKIKIIKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEENPLISNVAAISVGKIDSNLMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N +M G +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+ Sbjct: 180 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|30065081|ref|NP_839252.1| ribonuclease PH [Shigella flexneri 2a str. 2457T] gi|56480393|ref|NP_709422.2| ribonuclease PH [Shigella flexneri 2a str. 301] gi|110807680|ref|YP_691200.1| ribonuclease PH [Shigella flexneri 5 str. 8401] gi|157163124|ref|YP_001460442.1| ribonuclease PH [Escherichia coli HS] gi|170018127|ref|YP_001723081.1| ribonuclease PH [Escherichia coli ATCC 8739] gi|194435850|ref|ZP_03067953.1| ribonuclease PH [Escherichia coli 101-1] gi|253771516|ref|YP_003034347.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163571|ref|YP_003046679.1| ribonuclease PH [Escherichia coli B str. REL606] gi|260857962|ref|YP_003231853.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368] gi|260870373|ref|YP_003236775.1| ribonuclease PH [Escherichia coli O111:H- str. 11128] gi|297518127|ref|ZP_06936513.1| ribonuclease PH [Escherichia coli OP50] gi|300907685|ref|ZP_07125313.1| ribonuclease PH [Escherichia coli MS 84-1] gi|300923429|ref|ZP_07139469.1| ribonuclease PH [Escherichia coli MS 182-1] gi|300927927|ref|ZP_07143486.1| ribonuclease PH [Escherichia coli MS 187-1] gi|301303877|ref|ZP_07209996.1| ribonuclease PH [Escherichia coli MS 124-1] gi|301325325|ref|ZP_07218832.1| ribonuclease PH [Escherichia coli MS 78-1] gi|312972072|ref|ZP_07786246.1| ribonuclease PH [Escherichia coli 1827-70] gi|61216048|sp|Q83PN2|RNPH_SHIFL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123047760|sp|Q0SYH0|RNPH_SHIF8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166991084|sp|A8A6A5|RNPH_ECOHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043762|sp|B1IYV7|RNPH_ECOLC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|30043342|gb|AAP19063.1| RNase PH [Shigella flexneri 2a str. 2457T] gi|56383944|gb|AAN45129.2| RNase PH [Shigella flexneri 2a str. 301] gi|110617228|gb|ABF05895.1| RNase PH [Shigella flexneri 5 str. 8401] gi|157068804|gb|ABV08059.1| ribonuclease PH [Escherichia coli HS] gi|169753055|gb|ACA75754.1| ribonuclease PH [Escherichia coli ATCC 8739] gi|194425393|gb|EDX41377.1| ribonuclease PH [Escherichia coli 101-1] gi|253322560|gb|ACT27162.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975472|gb|ACT41143.1| ribonuclease PH [Escherichia coli B str. REL606] gi|253979628|gb|ACT45298.1| ribonuclease PH [Escherichia coli BL21(DE3)] gi|257756611|dbj|BAI28113.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368] gi|257766729|dbj|BAI38224.1| ribonuclease PH [Escherichia coli O111:H- str. 11128] gi|281603006|gb|ADA75990.1| Ribonuclease PH [Shigella flexneri 2002017] gi|300400621|gb|EFJ84159.1| ribonuclease PH [Escherichia coli MS 84-1] gi|300420256|gb|EFK03567.1| ribonuclease PH [Escherichia coli MS 182-1] gi|300464019|gb|EFK27512.1| ribonuclease PH [Escherichia coli MS 187-1] gi|300840840|gb|EFK68600.1| ribonuclease PH [Escherichia coli MS 124-1] gi|300847852|gb|EFK75612.1| ribonuclease PH [Escherichia coli MS 78-1] gi|309704045|emb|CBJ03391.1| ribonuclease PH [Escherichia coli ETEC H10407] gi|310334449|gb|EFQ00654.1| ribonuclease PH [Escherichia coli 1827-70] gi|313647483|gb|EFS11933.1| ribonuclease PH [Shigella flexneri 2a str. 2457T] gi|313848787|emb|CAQ33969.2| rph [Escherichia coli BL21(DE3)] gi|315254030|gb|EFU33998.1| ribonuclease PH [Escherichia coli MS 85-1] gi|320201331|gb|EFW75912.1| Ribonuclease PH [Escherichia coli EC4100B] gi|323155294|gb|EFZ41477.1| ribonuclease PH [Escherichia coli EPECa14] gi|323173236|gb|EFZ58865.1| ribonuclease PH [Escherichia coli LT-68] gi|323179387|gb|EFZ64954.1| ribonuclease PH [Escherichia coli 1180] gi|323944096|gb|EGB40176.1| ribonuclease PH [Escherichia coli H120] gi|323959891|gb|EGB55539.1| ribonuclease PH [Escherichia coli H489] gi|323971285|gb|EGB66530.1| ribonuclease PH [Escherichia coli TA007] gi|332750601|gb|EGJ81009.1| ribonuclease PH [Shigella flexneri 4343-70] gi|332751354|gb|EGJ81757.1| ribonuclease PH [Shigella flexneri 2747-71] gi|332764155|gb|EGJ94392.1| ribonuclease PH [Shigella flexneri 2930-71] gi|332996132|gb|EGK15759.1| ribonuclease PH [Shigella flexneri VA-6] gi|332997420|gb|EGK17036.1| ribonuclease PH [Shigella flexneri K-218] gi|332997778|gb|EGK17389.1| ribonuclease PH [Shigella flexneri K-272] gi|333012908|gb|EGK32285.1| ribonuclease PH [Shigella flexneri K-304] gi|333013313|gb|EGK32685.1| ribonuclease PH [Shigella flexneri K-227] Length = 238 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 127/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|182677771|ref|YP_001831917.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039] gi|226736889|sp|B2IH14|RNPH_BEII9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|182633654|gb|ACB94428.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039] Length = 237 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 137/239 (57%), Positives = 170/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +R ++L R V++YAEGSCLVKFG TH+L TA+LE+K P W+R GW+T Sbjct: 1 MRPSKRAAQDLRPVTLERNVARYAEGSCLVKFGGTHVLCTASLEDKPPPWLRGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE++SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDV+Q Sbjct: 61 AEYAMLPRATHTRTRRESMSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVALHDC + M L+ HVAA+SCG+ G ++DLDY Sbjct: 121 ADGGTRTAAITGAWVALHDCCKWMH--GRSIIKEFPLREHVAAVSCGIYQGEAVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFVMT G +VEVQ SAE A FS+D +L LAK IA L+ +QK I Sbjct: 179 EDSVAQTDANFVMTGGGALVEVQASAEGAVFSEDELSVLLALAKGGIAQLVNIQKLAIG 237 >gi|329847441|ref|ZP_08262469.1| ribonuclease PH [Asticcacaulis biprosthecum C19] gi|328842504|gb|EGF92073.1| ribonuclease PH [Asticcacaulis biprosthecum C19] Length = 250 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R S R+ +QMR ++L V++YAEGSCLV FG T +L TA++E VP +++ GW+T Sbjct: 13 IRPSNRKPDQMRNVTLETGVTRYAEGSCLVTFGHTRVLVTASVETGVPSFLKGKGQGWVT 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R +REA +G+Q GR+QEIQR+IGR++R+V+DL ALG RQI +DCDV+Q Sbjct: 73 AEYGMLPRSTHTRSRREAATGKQSGRTQEIQRLIGRSMRAVIDLKALGERQITLDCDVLQ 132 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVAL + ++K L VAAISCG+ P++DLDY Sbjct: 133 ADGGTRTASITGAWVALAAACDKL--VADKIIEKSPLLDQVAAISCGIFEAVPVLDLDYD 190 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T SGH VE+Q + E+ FS+ F + +LA ++L LQ V+ Sbjct: 191 EDSNAETDANFVITGSGHAVEIQATGEKRGFSRQEFDTLYDLALKGTSELFALQNQVLG 249 >gi|238902734|ref|YP_002928530.1| defective ribonuclease PH [Escherichia coli BW2952] gi|298351813|sp|P0CG18|RNPH_ECOBW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|238860742|gb|ACR62740.1| defective ribonuclease PH [Escherichia coli BW2952] gi|260447338|gb|ACX37760.1| ribonuclease PH [Escherichia coli DH1] gi|315138225|dbj|BAJ45384.1| ribonuclease PH [Escherichia coli DH1] Length = 238 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAALAN 238 >gi|188495519|ref|ZP_03002789.1| ribonuclease PH [Escherichia coli 53638] gi|188490718|gb|EDU65821.1| ribonuclease PH [Escherichia coli 53638] gi|332345611|gb|AEE58945.1| ribonuclease PH [Escherichia coli UMNK88] Length = 238 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|303241597|ref|ZP_07328096.1| ribonuclease PH [Acetivibrio cellulolyticus CD2] gi|302590817|gb|EFL60566.1| ribonuclease PH [Acetivibrio cellulolyticus CD2] Length = 282 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 117/240 (48%), Positives = 168/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+++ +R++ +TR K+AEGS L++ GDT ++ TA++++KVP + +N+ GW+T Sbjct: 25 LRIDGREKSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTASVDDKVPPFKKNSGEGWVT 84 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRSTG R +R+ + GRSQEIQR+IGRALRSVV+ ALG R IIIDCDVIQ Sbjct: 85 AEYSMLPRSTGVRNQRDISKLKLNGRSQEIQRLIGRALRSVVNFHALGERAIIIDCDVIQ 144 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ D + + + + + VAA+S G++ ++DL YG Sbjct: 145 ADGGTRTASITGAFVAMVDACKKLVE--DGVIEKIPITDMVAAVSVGIIGDEEMLDLCYG 202 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT SG +EVQ + E++ F +D +L+LA+ I +LI +QKDV+ Sbjct: 203 EDSNAVVDMNVVMTSSGEFIEVQATGEQSPFRRDQLNKLLDLAEVGIKELISIQKDVLGQ 262 >gi|228941669|ref|ZP_04104216.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974596|ref|ZP_04135162.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981191|ref|ZP_04141491.1| Ribonuclease PH [Bacillus thuringiensis Bt407] gi|228778391|gb|EEM26658.1| Ribonuclease PH [Bacillus thuringiensis Bt407] gi|228784999|gb|EEM33012.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817881|gb|EEM63959.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942277|gb|AEA18173.1| ribonuclease PH [Bacillus thuringiensis serovar chinensis CT-43] Length = 245 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDIQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|291086420|ref|ZP_06355763.2| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220] gi|291068205|gb|EFE06314.1| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220] Length = 273 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT Sbjct: 36 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 95 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 96 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 155 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 156 ADGGTRTASITGACVALADALNKLVASGKL--KTNPMKGMVAAVSVGIVNGEALCDLEYV 213 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 214 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 273 >gi|218528482|ref|YP_002419298.1| ribonuclease PH [Methylobacterium chloromethanicum CM4] gi|254808592|sp|B7L092|RNPH_METC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|218520785|gb|ACK81370.1| ribonuclease PH [Methylobacterium chloromethanicum CM4] Length = 237 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 135/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC M + LK HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T G IVEVQG+AE F+ + F +L LAK +A L++LQ+ I+ Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAELEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237 >gi|121587563|ref|ZP_01677329.1| ribonuclease PH [Vibrio cholerae 2740-80] gi|121548201|gb|EAX58271.1| ribonuclease PH [Vibrio cholerae 2740-80] Length = 229 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 119/230 (51%), Positives = 159/230 (69%), Gaps = 2/230 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R I +TR + YAEGS LV+FG+T +L A++EE VP W++ GW+T Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D H+ + +KGHVAA+S G+L + DL+Y Sbjct: 121 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 EDS D D N VMT+ G ++E+QG+AE FS + +L +AK IAD+ Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADM 228 >gi|65321848|ref|ZP_00394807.1| COG0689: RNase PH [Bacillus anthracis str. A2012] Length = 258 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 14 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 191 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 251 Query: 240 NEV 242 + V Sbjct: 252 DIV 254 >gi|296134058|ref|YP_003641305.1| ribonuclease PH [Thermincola sp. JR] gi|296032636|gb|ADG83404.1| ribonuclease PH [Thermincola potens JR] Length = 239 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TR K+AEGS L++ GDT ++ TAT+E+KVP +++ GWITA Sbjct: 3 RNDGRANDQLRPVKITRHYIKHAEGSVLIEMGDTKVICTATVEDKVPPFMKGEGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRS R+ REA G+ GGR+ EIQR+IGR+LR+VVDL ALG R + +DCDVIQA Sbjct: 63 EYGMLPRSAATRIPREAAKGKIGGRTYEIQRLIGRSLRAVVDLEALGERTVTVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L+H D + ++AA+S G + G ++DL + E Sbjct: 123 DGGTRTASITGAFVALVDALRHQVD--QGVLEKFPVLDYMAAVSVGKVNGEILLDLAFSE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N VMT G +EVQG+AE + F ++ L +A I LI+ Q +V+ Sbjct: 181 DSVAEVDMNVVMTRGGKFLEVQGTAEGSPFDREELEKFLEMAGKGIQQLIQAQMEVLGE 239 >gi|157373519|ref|YP_001472119.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3] gi|189043777|sp|A8FQ68|RNPH_SHESH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157315893|gb|ABV34991.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3] Length = 237 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++ GW+T Sbjct: 1 MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDSLNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++E+QG+AE FS + ++L LAK I +++ +QK +S Sbjct: 179 EDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKAALS 237 >gi|302521564|ref|ZP_07273906.1| ribonuclease PH [Streptomyces sp. SPB78] gi|302430459|gb|EFL02275.1| ribonuclease PH [Streptomyces sp. SPB78] Length = 241 Score = 335 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 155/239 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R +S+ R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDPRALGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + L+ V+A+S G++ P +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V T G VEVQG+AE A F + A+L+LA ADL LQ++ + Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQREALEG 241 >gi|163849851|ref|YP_001637894.1| ribonuclease PH [Methylobacterium extorquens PA1] gi|240137077|ref|YP_002961546.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Methylobacterium extorquens AM1] gi|226736915|sp|A9VZR7|RNPH_METEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|163661456|gb|ABY28823.1| ribonuclease PH [Methylobacterium extorquens PA1] gi|240007043|gb|ACS38269.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Methylobacterium extorquens AM1] Length = 237 Score = 335 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 135/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ Sbjct: 61 AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHDC M + LK HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T G IVEVQG+AE F+ + F +L LAK +A L++LQ+ I+ Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237 >gi|82779134|ref|YP_405483.1| ribonuclease PH [Shigella dysenteriae Sd197] gi|309784379|ref|ZP_07679018.1| ribonuclease PH [Shigella dysenteriae 1617] gi|123561122|sp|Q329L3|RNPH_SHIDS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|81243282|gb|ABB63992.1| RNase PH [Shigella dysenteriae Sd197] gi|308927886|gb|EFP73354.1| ribonuclease PH [Shigella dysenteriae 1617] Length = 238 Score = 335 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 125/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA +AL D LQ + + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACMALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238 >gi|297571668|ref|YP_003697442.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595] gi|296932015|gb|ADH92823.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595] Length = 246 Score = 335 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 110/240 (45%), Positives = 153/240 (63%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R + +TR EGS LV+FG+T +L A+ E VP W +++ GW+T Sbjct: 6 RADGRATNELRPVKITRNFLDAGEGSVLVEFGNTKVLCVASFTEGVPRWRKDSGLGWVTG 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+V G+ GR+QEI R++GRALR+VVD+SALG I++DCDV+QA Sbjct: 66 EYSMLPRATSTRNQRESVKGKVSGRTQEISRLVGRALRAVVDMSALGDNTIVLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTA+ITGA+VAL D + + + + VL+ VAAIS G++ G P +DL Y Sbjct: 126 DGGTRTASITGAYVALADAVAWGIERGHIKPRAGKPVLRDSVAAISVGIIDGVPCLDLPY 185 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D N VMT +G +EVQG+AE F + +L+LA +L Q D + Sbjct: 186 EEDVRAETDMNVVMTGTGKFIEVQGTAEGEPFDRTELGQLLDLATAGCQELTSKQNDALG 245 >gi|157827025|ref|YP_001496089.1| ribonuclease PH [Rickettsia bellii OSU 85-389] gi|166228311|sp|A8GW25|RNPH_RICB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157802329|gb|ABV79052.1| ribonuclease PH [Rickettsia bellii OSU 85-389] Length = 239 Score = 335 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +A+ + VP ++RN GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST R KREAV G+Q GR+QEIQR+IGR +RS++DL LG RQI IDCDVI Sbjct: 61 AEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L VAA+SCG+ PI+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--ERILKVNPLINQVAAVSCGIYKDQPILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD+NFV +G+++E+QG+AE+ FS++ F ML LAK +A+L KLQ V+ N Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQVLLN 238 >gi|194367042|ref|YP_002029652.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3] gi|226736943|sp|B4SU06|RNPH_STRM5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|194349846|gb|ACF52969.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3] Length = 241 Score = 335 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 119/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R + + R +++AEGS LV FG+T +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMKRGDI--KRNPILGAVAAVSVGVYRGTPVLDLDYAE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM D G +E+QG+AE F +D A+L LA+ + +L+ Q+ +S Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVRELLDAQQAALS 240 >gi|75760745|ref|ZP_00740767.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899648|ref|YP_002448059.1| ribonuclease PH [Bacillus cereus G9842] gi|228903010|ref|ZP_04067149.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222] gi|228967584|ref|ZP_04128608.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001] gi|226736885|sp|B7IIZ1|RNPH_BACC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|74491773|gb|EAO54967.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218545068|gb|ACK97462.1| ribonuclease PH [Bacillus cereus G9842] gi|228792108|gb|EEM39686.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001] gi|228856603|gb|EEN01124.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222] Length = 245 Score = 335 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDMQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|223365844|pdb|3DD6|A Chain A, Crystal Structure Of Rph, An Exoribonuclease From Bacillus Anthracis At 1.7 A Resolution Length = 255 Score = 335 bits (860), Expect = 3e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 11 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 71 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 131 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 188 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 189 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 248 Query: 240 NEV 242 + V Sbjct: 249 DIV 251 >gi|332284454|ref|YP_004416365.1| ribonuclease PH [Pusillimonas sp. T7-7] gi|330428407|gb|AEC19741.1| ribonuclease PH [Pusillimonas sp. T7-7] Length = 271 Score = 335 bits (860), Expect = 3e-90, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RLSGR +++R + + +++AEGS L+K GDTH+L A++ EKVP +++ GW+TA Sbjct: 36 RLSGRAASELRPVVIETGYTRHAEGSVLIKAGDTHVLCNASVLEKVPPFLKGKSQGWVTA 95 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+V DL+ALG R + +DCDV+QA Sbjct: 96 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLTALGERTVQLDCDVLQA 155 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVA ++ + + L VAA+S G++ G ++DLDY E Sbjct: 156 DGGTRCASITGAWVAAALAVRGLVE--QGVLAQSPLLDQVAAVSVGLVGGQALLDLDYTE 213 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D N VMT +GH VEVQG+AE TF + +L+LA+D I L+ QK ++ Sbjct: 214 DSGCGADMNIVMTGAGHFVEVQGTAEGQTFERKALDELLDLAQDGIRQLLAEQKRALA 271 >gi|229192693|ref|ZP_04319652.1| Ribonuclease PH [Bacillus cereus ATCC 10876] gi|228590783|gb|EEK48643.1| Ribonuclease PH [Bacillus cereus ATCC 10876] Length = 258 Score = 335 bits (860), Expect = 3e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 14 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 191 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 251 Query: 240 NEV 242 + V Sbjct: 252 DIV 254 >gi|304407458|ref|ZP_07389110.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9] gi|304343409|gb|EFM09251.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9] Length = 248 Score = 335 bits (860), Expect = 3e-90, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 170/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R I++ V+KYAEGS L+ FGDT +L TAT+E++VP +++ GW+T Sbjct: 1 MRIDGREAAQLRSITIETGVNKYAEGSVLIAFGDTKVLVTATVEDRVPPFMKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R +REA G+ GGR+ EIQR+IGRALRSVVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATQSRNQREAARGKLGGRTMEIQRLIGRALRSVVDLQALGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA++AL + + + ++ S + ++A++S G++ G P++DL+Y Sbjct: 121 ADGGTRTTSITGAFIALAIAVDKLAEKASF--KSYPITDYLASVSVGVVNGSPVLDLNYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT +G VEVQG+ E + FS+ A+L LA+ I +LI Q++V+ Sbjct: 179 EDSKAKVDMNVVMTGAGQFVEVQGTGEESPFSRSELDALLGLAETGITELIGKQREVLGQ 238 >gi|229105117|ref|ZP_04235768.1| Ribonuclease PH [Bacillus cereus Rock3-28] gi|228678298|gb|EEL32524.1| Ribonuclease PH [Bacillus cereus Rock3-28] Length = 258 Score = 335 bits (860), Expect = 3e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 14 MRVDGRGKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVGEQGVVLDLNY 191 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 251 Query: 240 NEV 242 + V Sbjct: 252 DIV 254 >gi|149908596|ref|ZP_01897258.1| putative ribonuclease PH [Moritella sp. PE36] gi|149808430|gb|EDM68367.1| putative ribonuclease PH [Moritella sp. PE36] Length = 243 Score = 335 bits (860), Expect = 3e-90, Method: Composition-based stats. Identities = 119/242 (49%), Positives = 159/242 (65%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q+R +++TR + AEGS LV+FG T +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPSQRTLGQVRPVTITRNFTANAEGSVLVEFGGTKVLCTATVEKGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+Q GR+ EIQR+I R+LR+ +DL +LG IIIDCDVIQ Sbjct: 61 AEYGMLPRSTHKRMHREAARGQQTGRTMEIQRLIARSLRACIDLESLGEHTIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D ++ + +K +AA+S G+ G + DLDY Sbjct: 121 ADGGTRTAAITGACVALADAIEFL--IRKGKLTVSPIKFMIAAVSVGIYKGEAVCDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT++G +E+QG+AE FS + ML LAKD I +I QK + + Sbjct: 179 EDSDAETDMNVVMTETGKFIEIQGTAEGVPFSHEEMLDMLALAKDGIEMIIIEQKKALGD 238 Query: 241 EV 242 + Sbjct: 239 SL 240 >gi|217967720|ref|YP_002353226.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724] gi|226736904|sp|B8E0G7|RNPH_DICTD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|217336819|gb|ACK42612.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724] Length = 240 Score = 335 bits (860), Expect = 3e-90, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R +R + +TR+ KY GS L++ G+T ++ T ++EEKVP +++ T GW+T Sbjct: 2 VRIDKRSNTDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R R+ V G GRSQEIQR+IGR+LR+VVD S LG R I ID DVIQ Sbjct: 62 AEYGMLPGSTPERKVRDVVKGAINGRSQEIQRLIGRSLRAVVDFSKLGERTIWIDADVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL+D L+ ++ ++ VAA+S G++ G ++DL Sbjct: 122 ADGGTRTAAITGAFVALYDALEKLKR--EGIIKEIPIREFVAAVSVGIVDGEILLDLSAN 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED +VD N VMT+SG VE+QG+AE+ F+ + MLNLAK I LI++QK + Sbjct: 180 EDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTHEQLQHMLNLAKQGIMRLIEIQKKTLG 238 >gi|217978304|ref|YP_002362451.1| ribonuclease PH [Methylocella silvestris BL2] gi|254808594|sp|B8ERN7|RNPH_METSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|217503680|gb|ACK51089.1| ribonuclease PH [Methylocella silvestris BL2] Length = 237 Score = 335 bits (860), Expect = 3e-90, Method: Composition-based stats. Identities = 133/239 (55%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++ R V++YAEGSCL+KFG TH+L TA+LE+K P W+R GW++ Sbjct: 1 MRPSQRAADELRPVTFERNVARYAEGSCLIKFGSTHVLCTASLEDKPPAWLRGQGRGWVS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R KRE+ +G+ GR+QEIQR+IGR+LR+V +L LG RQI IDCDV+Q Sbjct: 61 AEYAMLPRATHTRTKRESTTGKPSGRTQEIQRLIGRSLRAVTNLQGLGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVALHDCL+ M S L+ HVAAISCG+ G ++DLDY Sbjct: 121 ADGGTRTAAITGAWVALHDCLKWMRQRS--IIKDLPLRDHVAAISCGVSNGESVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T SG +VEVQ +AE A F++ AML LA+ I L+++QK ++ Sbjct: 179 EDSAAETDANFVITGSGSLVEVQATAEGAVFTETQLTAMLALARGGITTLVEMQKAAVA 237 >gi|77464799|ref|YP_354303.1| RNAse PH [Rhodobacter sphaeroides 2.4.1] gi|77389217|gb|ABA80402.1| RNAse PH [Rhodobacter sphaeroides 2.4.1] Length = 241 Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T Sbjct: 5 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q Sbjct: 65 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY Sbjct: 125 ADGGTRCASITGGWVALRLAVNKLLKAG--IIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK + Sbjct: 183 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 241 >gi|229098953|ref|ZP_04229888.1| Ribonuclease PH [Bacillus cereus Rock3-29] gi|228684451|gb|EEL38394.1| Ribonuclease PH [Bacillus cereus Rock3-29] Length = 258 Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 14 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 74 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 191 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 251 Query: 240 NEV 242 + V Sbjct: 252 DIV 254 >gi|290477306|ref|YP_003470227.1| RNase PH [Xenorhabdus bovienii SS-2004] gi|289176660|emb|CBJ83469.1| RNase PH [Xenorhabdus bovienii SS-2004] Length = 242 Score = 335 bits (859), Expect = 4e-90, Method: Composition-based stats. Identities = 116/238 (48%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR Q+R I +TR +K+AEGS LV+FGDT +L A++EE +P +++ GWITA Sbjct: 7 RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQA Sbjct: 67 EYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAI+GA VAL D L + ++ +K VAA+S G++ G + DL+Y E Sbjct: 127 DGGTRTAAISGACVALVDALNKL--VADGKLKKSPMKSMVAAVSVGIVEGEGLCDLEYVE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N VM D G ++EVQG+AE FS D ++L+LAK+ + + Q+D + Sbjct: 185 DSAAETDMNIVMMDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFAAQRDALK 242 >gi|30264550|ref|NP_846927.1| ribonuclease PH [Bacillus anthracis str. Ames] gi|47530015|ref|YP_021364.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor'] gi|49187372|ref|YP_030624.1| ribonuclease PH [Bacillus anthracis str. Sterne] gi|49481507|ref|YP_038534.1| ribonuclease PH [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141017|ref|YP_085813.1| ribonuclease PH [Bacillus cereus E33L] gi|162382773|ref|YP_896797.2| ribonuclease PH [Bacillus thuringiensis str. Al Hakam] gi|165871495|ref|ZP_02216142.1| ribonuclease PH [Bacillus anthracis str. A0488] gi|167635642|ref|ZP_02393954.1| ribonuclease PH [Bacillus anthracis str. A0442] gi|167641666|ref|ZP_02399911.1| ribonuclease PH [Bacillus anthracis str. A0193] gi|170688310|ref|ZP_02879520.1| ribonuclease PH [Bacillus anthracis str. A0465] gi|170708334|ref|ZP_02898778.1| ribonuclease PH [Bacillus anthracis str. A0389] gi|177653076|ref|ZP_02935363.1| ribonuclease PH [Bacillus anthracis str. A0174] gi|190566932|ref|ZP_03019848.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I] gi|196034453|ref|ZP_03101862.1| ribonuclease PH [Bacillus cereus W] gi|196039169|ref|ZP_03106475.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99] gi|196044912|ref|ZP_03112146.1| ribonuclease PH [Bacillus cereus 03BB108] gi|218905683|ref|YP_002453517.1| ribonuclease PH [Bacillus cereus AH820] gi|225866464|ref|YP_002751842.1| ribonuclease PH [Bacillus cereus 03BB102] gi|227817261|ref|YP_002817270.1| ribonuclease PH [Bacillus anthracis str. CDC 684] gi|228929528|ref|ZP_04092547.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935800|ref|ZP_04098612.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948205|ref|ZP_04110489.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093577|ref|ZP_04224678.1| Ribonuclease PH [Bacillus cereus Rock3-42] gi|229124021|ref|ZP_04253213.1| Ribonuclease PH [Bacillus cereus 95/8201] gi|229186723|ref|ZP_04313881.1| Ribonuclease PH [Bacillus cereus BGSC 6E1] gi|229601018|ref|YP_002868764.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248] gi|254687030|ref|ZP_05150888.1| ribonuclease PH [Bacillus anthracis str. CNEVA-9066] gi|254724592|ref|ZP_05186375.1| ribonuclease PH [Bacillus anthracis str. A1055] gi|254736584|ref|ZP_05194290.1| ribonuclease PH [Bacillus anthracis str. Western North America USA6153] gi|254741622|ref|ZP_05199309.1| ribonuclease PH [Bacillus anthracis str. Kruger B] gi|254754780|ref|ZP_05206815.1| ribonuclease PH [Bacillus anthracis str. Vollum] gi|254757612|ref|ZP_05209639.1| ribonuclease PH [Bacillus anthracis str. Australia 94] gi|301055992|ref|YP_003794203.1| ribonuclease PH [Bacillus anthracis CI] gi|61215848|sp|Q633V4|RNPH_BACCZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215928|sp|Q6HD42|RNPH_BACHK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61216034|sp|Q81LA9|RNPH_BACAN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736884|sp|B7JQ74|RNPH_BACC0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808577|sp|C3PA74|RNPH_BACAA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808578|sp|C3L7T5|RNPH_BACAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808579|sp|C1ETS9|RNPH_BACC3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|30259208|gb|AAP28413.1| tRNA nucleotidyltransferase [Bacillus anthracis str. Ames] gi|47505163|gb|AAT33839.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor'] gi|49181299|gb|AAT56675.1| ribonuclease PH [Bacillus anthracis str. Sterne] gi|49333063|gb|AAT63709.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974486|gb|AAU16036.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus cereus E33L] gi|164712792|gb|EDR18322.1| ribonuclease PH [Bacillus anthracis str. A0488] gi|167510373|gb|EDR85774.1| ribonuclease PH [Bacillus anthracis str. A0193] gi|167529062|gb|EDR91817.1| ribonuclease PH [Bacillus anthracis str. A0442] gi|170126709|gb|EDS95592.1| ribonuclease PH [Bacillus anthracis str. A0389] gi|170667816|gb|EDT18569.1| ribonuclease PH [Bacillus anthracis str. A0465] gi|172081600|gb|EDT66671.1| ribonuclease PH [Bacillus anthracis str. A0174] gi|190561923|gb|EDV15892.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I] gi|195992995|gb|EDX56954.1| ribonuclease PH [Bacillus cereus W] gi|196024400|gb|EDX63073.1| ribonuclease PH [Bacillus cereus 03BB108] gi|196029796|gb|EDX68397.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99] gi|218536266|gb|ACK88664.1| ribonuclease PH [Bacillus cereus AH820] gi|225790478|gb|ACO30695.1| tRNA nucleotidyltransferase [Bacillus cereus 03BB102] gi|227004760|gb|ACP14503.1| tRNA nucleotidyltransferase [Bacillus anthracis str. CDC 684] gi|228596736|gb|EEK54398.1| Ribonuclease PH [Bacillus cereus BGSC 6E1] gi|228659323|gb|EEL14971.1| Ribonuclease PH [Bacillus cereus 95/8201] gi|228689786|gb|EEL43592.1| Ribonuclease PH [Bacillus cereus Rock3-42] gi|228811563|gb|EEM57900.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823857|gb|EEM69677.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830107|gb|EEM75725.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265426|gb|ACQ47063.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248] gi|300378161|gb|ADK07065.1| ribonuclease PH [Bacillus cereus biovar anthracis str. CI] Length = 245 Score = 335 bits (859), Expect = 4e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|296393943|ref|YP_003658827.1| ribonuclease PH [Segniliparus rotundus DSM 44985] gi|296181090|gb|ADG97996.1| ribonuclease PH [Segniliparus rotundus DSM 44985] Length = 261 Score = 335 bits (859), Expect = 4e-90, Method: Composition-based stats. Identities = 111/238 (46%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR +++MR + +TR + GS LV+FG T + A++ E VP W + T GW+TA Sbjct: 4 RLDGRHDDEMRPVKITRGFTSNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPAATATRNDRESVKGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + S + Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAFVALSDAVTWL-AASGRLADPQPISCGIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D+ +VD N V TD+G +VEVQG+AE ATF + +L+LA I L+ Q++ ++ Sbjct: 183 DARAEVDMNVVATDTGALVEVQGTAEGATFHRKTLDKLLDLAFSGIERLVAAQQEALA 240 >gi|110643884|ref|YP_671614.1| ribonuclease PH [Escherichia coli 536] gi|191170501|ref|ZP_03032054.1| ribonuclease PH [Escherichia coli F11] gi|300983477|ref|ZP_07176624.1| ribonuclease PH [Escherichia coli MS 200-1] gi|306816009|ref|ZP_07450147.1| ribonuclease PH [Escherichia coli NC101] gi|123048705|sp|Q0TBG6|RNPH_ECOL5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|110345476|gb|ABG71713.1| ribonuclease PH [Escherichia coli 536] gi|190909309|gb|EDV68895.1| ribonuclease PH [Escherichia coli F11] gi|300306941|gb|EFJ61461.1| ribonuclease PH [Escherichia coli MS 200-1] gi|305850405|gb|EFM50862.1| ribonuclease PH [Escherichia coli NC101] gi|324012723|gb|EGB81942.1| ribonuclease PH [Escherichia coli MS 60-1] Length = 238 Score = 335 bits (859), Expect = 4e-90, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVVTQKAALAN 238 >gi|126463642|ref|YP_001044756.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17029] gi|166228308|sp|A3PNR8|RNPH_RHOS1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|126105306|gb|ABN77984.1| RNAse PH [Rhodobacter sphaeroides ATCC 17029] Length = 237 Score = 335 bits (859), Expect = 4e-90, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKAG--IIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK + Sbjct: 179 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 237 >gi|259906754|ref|YP_002647110.1| ribonuclease PH [Erwinia pyrifoliae Ep1/96] gi|224962376|emb|CAX53831.1| Ribonuclease PH (TRNA nucleotidyltransferase) [Erwinia pyrifoliae Ep1/96] gi|283476540|emb|CAY72368.1| ribonuclease PH [Erwinia pyrifoliae DSM 12163] gi|310765964|gb|ADP10914.1| ribonuclease PH [Erwinia sp. Ejp617] Length = 238 Score = 335 bits (859), Expect = 4e-90, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L H+ + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNHLVSIGKL--KANPMKGMVAAISVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I L+ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTN 238 >gi|113866973|ref|YP_725462.1| ribonuclease PH [Ralstonia eutropha H16] gi|123134290|sp|Q0KD27|RNPH_RALEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|113525749|emb|CAJ92094.1| Ribonuclease PH [Ralstonia eutropha H16] Length = 239 Score = 335 bits (859), Expect = 4e-90, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTVHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA HD + M + + ++ HVAA+S GM+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAFVAAHDAVSTM--LRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ D D N VMT SG VEVQG+AE A FS+ AM LA+ IA L++ Q++ + Sbjct: 179 EDSSCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQHQREALG 237 >gi|76580232|gb|ABA49707.1| ribonuclease PH [Burkholderia pseudomallei 1710b] Length = 622 Score = 335 bits (859), Expect = 4e-90, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 171/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR+ +Q+R++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+T Sbjct: 385 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 444 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ Sbjct: 445 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 504 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA HD + + + +VAAIS G+ G P++DLDY Sbjct: 505 ADGGTRTASITGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGVFGGTPVLDLDYD 562 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT +G VEVQG+AE A FS+ A+L+LA+ I +L++LQ+ + Sbjct: 563 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 621 >gi|255324313|ref|ZP_05365434.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum SK141] gi|255298643|gb|EET77939.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum SK141] Length = 242 Score = 335 bits (859), Expect = 4e-90, Method: Composition-based stats. Identities = 104/238 (43%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA Sbjct: 66 EYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H++ + + L +AA+S G++ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDSIAAVSVGIIDGEICLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N VM +SG VE+QG+ E F ++ ML++A+ +LI QK + Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREDLNEMLDVAQKGCRELIAAQKAALG 241 >gi|226307366|ref|YP_002767326.1| ribonuclease PH [Rhodococcus erythropolis PR4] gi|229494008|ref|ZP_04387777.1| ribonuclease PH [Rhodococcus erythropolis SK121] gi|259494126|sp|C1A1V2|RNPH_RHOE4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226186483|dbj|BAH34587.1| ribonuclease PH [Rhodococcus erythropolis PR4] gi|229319077|gb|EEN84929.1| ribonuclease PH [Rhodococcus erythropolis SK121] Length = 261 Score = 335 bits (859), Expect = 5e-90, Method: Composition-based stats. Identities = 104/240 (43%), Positives = 159/240 (66%), Gaps = 1/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR + + GS LV+FG+T ++ TA++EE VP W + + GW+TA Sbjct: 4 REDGRADDELRTVKITRGFTSHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R+IGR+LR+ +DL+A+G I +DCDV+QA Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLIGRSLRACIDLAAIGENTIALDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TGA+VAL D + ++ ++ Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAVTGAYVALVDAVTYLR-AADLLSDPQPISCGIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L ++Q+ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQRQALAEP 242 >gi|332527984|ref|ZP_08404018.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2] gi|332112558|gb|EGJ12351.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2] Length = 241 Score = 335 bits (859), Expect = 5e-90, Method: Composition-based stats. Identities = 121/229 (52%), Positives = 160/229 (69%), Gaps = 2/229 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R SGR + +R +++TR +K+AEGS LV FGDT +L TA++EEKVP R + GW+T Sbjct: 4 VRSSGRAHDALRPVTITRHYTKHAEGSVLVCFGDTQVLCTASVEEKVPPHKRGSGEGWVT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I+IDCDV+Q Sbjct: 64 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRTVFDLGALGERSILIDCDVLQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA D + + + + ++ VAAIS G++ G P++DL+Y Sbjct: 124 ADGGTRTAAITGAFVAAQDAVNWL--LAQGKIAASPIRDQVAAISVGIVQGTPLLDLEYI 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS D D N VMT SG VE+QG+AE F++ A+L LA I + Sbjct: 182 EDSACDTDMNVVMTGSGGFVEIQGTAEGVPFTRAEMDALLALAGKGIGE 230 >gi|229163445|ref|ZP_04291396.1| Ribonuclease PH [Bacillus cereus R309803] gi|228620014|gb|EEK76889.1| Ribonuclease PH [Bacillus cereus R309803] Length = 245 Score = 334 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 IEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|194289073|ref|YP_002004980.1| ribonuclease ph [Cupriavidus taiwanensis LMG 19424] gi|226736900|sp|B3R3N0|RNPH_CUPTR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|193222908|emb|CAQ68913.1| RNase PH [Cupriavidus taiwanensis LMG 19424] Length = 239 Score = 334 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA HD + M + + ++ HVAA+S GM+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAFVAAHDAVATM--LRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG VEVQG+AE A FS+ AM LA+ IA L++ Q++ + Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQYQREALG 237 >gi|260893784|ref|YP_003239881.1| ribonuclease PH [Ammonifex degensii KC4] gi|260865925|gb|ACX53031.1| ribonuclease PH [Ammonifex degensii KC4] Length = 258 Score = 334 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL GR ++R + + SKYAEGSCL++ GDT +L TA++++KVP +++ T GW+T Sbjct: 1 MRLDGRGTGELRPVKIIPGYSKYAEGSCLIEMGDTRVLCTASIDDKVPSFLKGTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R RE GR GR+ EIQR+IGR+LR+ VDL ALG R II+DCDV+Q Sbjct: 61 AEYGMLPRATESRNLREVTKGRPSGRTLEIQRLIGRSLRAAVDLEALGERTIIVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VAL L + + L +K VAA+S G + ++DL + Sbjct: 121 ADGGTRTAAITGGFVALVYALDWLRNEGAIESL--PVKDLVAAVSVGKVKDAYLLDLTFA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT G +VEVQG+AE F+++ ML+LA ++ LI Q++ + Sbjct: 179 EDSMAEVDLNVVMTGKGELVEVQGTAEGKPFTREELNLMLDLAAQGVSVLIAKQREALG 237 >gi|228954763|ref|ZP_04116785.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|107124175|gb|ABF83610.1| Rph [Bacillus thuringiensis serovar kurstaki] gi|228804961|gb|EEM51558.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 245 Score = 334 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQVEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|1079663|gb|AAC44429.1| RNase PH [Pseudomonas aeruginosa PAO1] Length = 239 Score = 334 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 158/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGML RSTG R +REA G+QGGR+ EIQR+I R+LR+ +DLS LG + IDCDVIQ Sbjct: 63 EYGMLRRSTGERNQREASRGKQGGRTLEIQRLIDRSLRAALDLSKLGENTLYIDCDVIQT 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA V+L D L ++ LK VAA+S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGATVSLIDALAVLKK--RVALKGNPLKQIVAAVSVGIYQGVPVLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS + D N VMTD +EVQG+AE A F AML LA+ + +L++ Q+ ++ Sbjct: 181 DSAAESDLNVVMTDCRRFIEVQGTAEGAPFRPAELNAMLELAQQGMQELVRTQRAALAE 239 >gi|118418871|gb|ABK87290.1| RNAse PH [Bacillus thuringiensis str. Al Hakam] Length = 251 Score = 334 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 7 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 66 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 67 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 127 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 184 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 185 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 244 Query: 240 NEV 242 + V Sbjct: 245 DIV 247 >gi|30022573|ref|NP_834204.1| ribonuclease PH [Bacillus cereus ATCC 14579] gi|42783632|ref|NP_980879.1| ribonuclease PH [Bacillus cereus ATCC 10987] gi|206969838|ref|ZP_03230792.1| ribonuclease PH [Bacillus cereus AH1134] gi|206976011|ref|ZP_03236921.1| ribonuclease PH [Bacillus cereus H3081.97] gi|217961976|ref|YP_002340546.1| ribonuclease PH [Bacillus cereus AH187] gi|222097944|ref|YP_002532001.1| ribonuclease ph [Bacillus cereus Q1] gi|228910315|ref|ZP_04074132.1| Ribonuclease PH [Bacillus thuringiensis IBL 200] gi|228960757|ref|ZP_04122396.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str. T13001] gi|228987732|ref|ZP_04147843.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229048198|ref|ZP_04193767.1| Ribonuclease PH [Bacillus cereus AH676] gi|229071999|ref|ZP_04205209.1| Ribonuclease PH [Bacillus cereus F65185] gi|229081747|ref|ZP_04214240.1| Ribonuclease PH [Bacillus cereus Rock4-2] gi|229111953|ref|ZP_04241497.1| Ribonuclease PH [Bacillus cereus Rock1-15] gi|229129777|ref|ZP_04258744.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4] gi|229141223|ref|ZP_04269762.1| Ribonuclease PH [Bacillus cereus BDRD-ST26] gi|229147051|ref|ZP_04275411.1| Ribonuclease PH [Bacillus cereus BDRD-ST24] gi|229152684|ref|ZP_04280872.1| Ribonuclease PH [Bacillus cereus m1550] gi|229158099|ref|ZP_04286169.1| Ribonuclease PH [Bacillus cereus ATCC 4342] gi|229180760|ref|ZP_04308098.1| Ribonuclease PH [Bacillus cereus 172560W] gi|229198610|ref|ZP_04325312.1| Ribonuclease PH [Bacillus cereus m1293] gi|296504969|ref|YP_003666669.1| ribonuclease PH [Bacillus thuringiensis BMB171] gi|61215974|sp|Q72ZT1|RNPH_BACC1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61216033|sp|Q817P3|RNPH_BACCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736887|sp|B7HQP4|RNPH_BACC7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808580|sp|B9IZ73|RNPH_BACCQ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|29898131|gb|AAP11405.1| Ribonuclease PH [Bacillus cereus ATCC 14579] gi|42739561|gb|AAS43487.1| ribonuclease PH [Bacillus cereus ATCC 10987] gi|206735526|gb|EDZ52694.1| ribonuclease PH [Bacillus cereus AH1134] gi|206745763|gb|EDZ57160.1| ribonuclease PH [Bacillus cereus H3081.97] gi|217063584|gb|ACJ77834.1| ribonuclease PH [Bacillus cereus AH187] gi|221242002|gb|ACM14712.1| ribonuclease PH [Bacillus cereus Q1] gi|228584892|gb|EEK43008.1| Ribonuclease PH [Bacillus cereus m1293] gi|228602738|gb|EEK60221.1| Ribonuclease PH [Bacillus cereus 172560W] gi|228625418|gb|EEK82175.1| Ribonuclease PH [Bacillus cereus ATCC 4342] gi|228630830|gb|EEK87471.1| Ribonuclease PH [Bacillus cereus m1550] gi|228636439|gb|EEK92909.1| Ribonuclease PH [Bacillus cereus BDRD-ST24] gi|228642264|gb|EEK98556.1| Ribonuclease PH [Bacillus cereus BDRD-ST26] gi|228653693|gb|EEL09564.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4] gi|228671517|gb|EEL26817.1| Ribonuclease PH [Bacillus cereus Rock1-15] gi|228701592|gb|EEL54085.1| Ribonuclease PH [Bacillus cereus Rock4-2] gi|228711158|gb|EEL63123.1| Ribonuclease PH [Bacillus cereus F65185] gi|228723185|gb|EEL74561.1| Ribonuclease PH [Bacillus cereus AH676] gi|228772006|gb|EEM20461.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228798973|gb|EEM45948.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str. T13001] gi|228849375|gb|EEM94212.1| Ribonuclease PH [Bacillus thuringiensis IBL 200] gi|296326021|gb|ADH08949.1| ribonuclease PH [Bacillus thuringiensis BMB171] gi|324328384|gb|ADY23644.1| ribonuclease PH [Bacillus thuringiensis serovar finitimus YBT-020] Length = 245 Score = 334 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|114798422|ref|YP_761988.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444] gi|114738596|gb|ABI76721.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444] Length = 241 Score = 334 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR +++R ISL V++YAEGSCL KFG TH+L TA+ E+ VP W++ GW+T Sbjct: 5 VRPTGRAFDELRPISLETSVTRYAEGSCLAKFGHTHVLCTASWEKGVPGWLKGKGEGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LRSVVDL ALG I IDCDVIQ Sbjct: 65 GEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRSVVDLKALGENTITIDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL ++++ + + ++ AAIS G+ +P++D+DY Sbjct: 125 ADGGTRTASITGGFVALAMACRYLQ--TEGVIKASPIQKQAAAISVGLFQNHPVLDVDYP 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM+ G +EVQG+ E S+ M+ LA+ +L Q+ I Sbjct: 183 EDSEGEADMNVVMSSDGGFIEVQGTGESRPMSRTELDEMMRLAEKGCNELFAAQRAAIG 241 >gi|222056103|ref|YP_002538465.1| ribonuclease PH [Geobacter sp. FRC-32] gi|254808588|sp|B9M3E3|RNPH_GEOSF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|221565392|gb|ACM21364.1| ribonuclease PH [Geobacter sp. FRC-32] Length = 238 Score = 334 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 126/239 (52%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR E +RE+ +TR K+AEGS LV+FGDT ++ TA++E VP ++R GW+T Sbjct: 1 MRFDGRGEGSLREVRITRNYIKHAEGSVLVEFGDTKVICTASVESSVPPFLRGKGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R REA G+ GGR+ EIQR+IGR+LR+VVD+S LG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATHSRSPREAAKGKVGGRTHEIQRLIGRSLRAVVDMSLLGERSIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D LQ + S ++ VAA+S G++ G ++DL+Y Sbjct: 121 ADGGTRTASITGAYVALCDALQGLVAKGEL--SSLPIREAVAAVSVGIVGGVAVLDLNYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD NFVMT S VEVQG+AE F+ + AM LA D I L ++Q+ V++ Sbjct: 179 EDSAAEVDMNFVMTSSNRFVEVQGTAEAEPFTIEQMDAMRTLAVDGIKQLFQIQQAVLA 237 >gi|300113393|ref|YP_003759968.1| ribonuclease PH [Nitrosococcus watsonii C-113] gi|299539330|gb|ADJ27647.1| ribonuclease PH [Nitrosococcus watsonii C-113] Length = 239 Score = 334 bits (858), Expect = 6e-90, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +++R I TR ++YAEGS LV+FG+T ++ A++E+++P +++ T GWIT Sbjct: 1 MRPSGRAPHELRPIHFTRHYTQYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST NR+ REA GRQGGR+ EIQR+IGRALR+VVDL+ALG + +DCDVIQ Sbjct: 61 AEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRLIGRALRAVVDLAALGEVTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VAL D + + + G +A++S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGSYVALVDAIH--NRLKKRAIAHSPIHGQIASVSVGIYEGTPVLDLDYR 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST + D N VM ++G +E+QG+AE F + AML LAK+ I L+ Q +V++ Sbjct: 179 EDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLELAKNGITTLLAQQTEVLA 237 >gi|330466053|ref|YP_004403796.1| ribonuclease PH [Verrucosispora maris AB-18-032] gi|328809024|gb|AEB43196.1| ribonuclease PH [Verrucosispora maris AB-18-032] Length = 243 Score = 334 bits (858), Expect = 6e-90, Method: Composition-based stats. Identities = 118/240 (49%), Positives = 158/240 (65%), Gaps = 1/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R ++LTR S + EGS LV+FG T +L TA++ E VP W R + GW+TA Sbjct: 3 RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRRGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I++DCDV+QA Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAAIDLKALGENSIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VALHD + + +V+ VAAIS G++ G P +DL Y Sbjct: 123 DGGTRTAAITGAYVALHDAVSWLAARKALTGTPEKVMHRSVAAISVGVVAGEPRLDLCYD 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N V T +G VEVQG+ E F++D A+L+LA DL + Q+ + + Sbjct: 183 EDVAAEVDMNVVCTGAGDFVEVQGTGEAGVFARDQLDALLDLATVGCLDLAEAQRKALGS 242 >gi|315645714|ref|ZP_07898838.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453] gi|315279192|gb|EFU42502.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453] Length = 252 Score = 334 bits (858), Expect = 6e-90, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR+ +++R ++L+ V+KYAEGS ++ GDT +L TAT++EKVP +++ GW+T Sbjct: 1 MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATQSRNQREANRGKLTGRTMEIQRLIGRALRSVVNLYALGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA+VAL + + + + ++A+IS G+ G ++DL+Y Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAEQHKLAVF--PITDYLASISVGIAGGQALLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT G VEVQG+ E + FS++ +L L + I +LI+ Q++ + Sbjct: 179 EDSKAKVDMNLVMTGGGKFVEVQGTGEESPFSREELDQILELGEKGIRELIERQQEALG 237 >gi|332559695|ref|ZP_08414017.1| ribonuclease PH [Rhodobacter sphaeroides WS8N] gi|332277407|gb|EGJ22722.1| ribonuclease PH [Rhodobacter sphaeroides WS8N] Length = 237 Score = 334 bits (858), Expect = 6e-90, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKAG--IIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D NFV T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK + Sbjct: 179 EDSTAGTDGNFVFTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 237 >gi|302390319|ref|YP_003826140.1| RNAse PH [Thermosediminibacter oceani DSM 16646] gi|302200947|gb|ADL08517.1| RNAse PH [Thermosediminibacter oceani DSM 16646] Length = 252 Score = 334 bits (858), Expect = 6e-90, Method: Composition-based stats. Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 4/241 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +++R +++ RR +KYAEGS L++ GDT ++ TAT++EKVP ++R GW+TA Sbjct: 3 RADGREFDEIRPVNIIRRFNKYAEGSVLIEAGDTKVICTATVDEKVPPFLRGKGQGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE++ + GR+ EIQR+IGRA+RSVVDL+ALG R + +DCDVIQA Sbjct: 63 EYSMLPRATEIRNIRESL--KPSGRTMEIQRLIGRAMRSVVDLAALGERTVWLDCDVIQA 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++++D N + VAA+S G++ G ++DL++ E Sbjct: 121 DGGTRTAAITGAFVALVDAFKYLKD--NGIIEVIPVNSFVAAVSVGIVDGEKLLDLNFEE 178 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D VD N VMTD G +VEVQG+ E F++ ML+LA+ + +LI +QK V+S+ Sbjct: 179 DCRAQVDMNVVMTDKGQLVEVQGTGEAFPFTRQDLNDMLDLAQKGVFELISIQKQVLSDV 238 Query: 242 V 242 V Sbjct: 239 V 239 >gi|229032136|ref|ZP_04188113.1| Ribonuclease PH [Bacillus cereus AH1271] gi|228729192|gb|EEL80191.1| Ribonuclease PH [Bacillus cereus AH1271] Length = 245 Score = 334 bits (857), Expect = 6e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVQEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|319778262|ref|YP_004129175.1| Ribonuclease PH [Taylorella equigenitalis MCE9] gi|317108286|gb|ADU91032.1| Ribonuclease PH [Taylorella equigenitalis MCE9] Length = 251 Score = 334 bits (857), Expect = 6e-90, Method: Composition-based stats. Identities = 115/238 (48%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R +S+TR + YAEGS L+K G TH+L A++ KVP +++ GW+TA Sbjct: 8 RSDGRSNNQIRNVSITRNYTPYAEGSVLIKVGQTHVLCNASVLPKVPPFLKGQGTGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R+ REA G+Q GR+QEIQR+IGR+LR+ +DL+ALG I IDCDVIQA Sbjct: 68 EYGMLPRATHDRMDREASKGKQTGRTQEIQRLIGRSLRACIDLAALGEISIHIDCDVIQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVAL+D + S + + AIS G++ ++DLDY E Sbjct: 128 DGGTRCASITGAWVALYDAINK--CIERGLIQSNPIHQQIVAISVGVVGDGLLLDLDYSE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + D N VMT + VE+QG+AE TFS+D +L+LA+ L+++Q + + Sbjct: 186 DSNCESDINVVMTSNKTFVEIQGTAEGETFSRDSLNQLLDLAQFGCDQLLRVQLESLG 243 >gi|19705156|ref|NP_602651.1| ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713093|gb|AAL93950.1| Ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 434 Score = 334 bits (857), Expect = 6e-90, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 158/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEENPLISNVAAISVGKIDSNLMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N +M +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+ Sbjct: 180 EDSAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|228917119|ref|ZP_04080677.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842537|gb|EEM87627.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 245 Score = 334 bits (857), Expect = 6e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLRAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|254418052|ref|ZP_05031776.1| ribonuclease PH [Brevundimonas sp. BAL3] gi|196184229|gb|EDX79205.1| ribonuclease PH [Brevundimonas sp. BAL3] Length = 241 Score = 334 bits (857), Expect = 6e-90, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 171/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R ++Q+R +++ V++YAEGSCL+ FG T +L TA++EE +P W+R GW+T Sbjct: 1 MRHSQRTDDQLRPVTIETGVNRYAEGSCLITFGHTKVLVTASVEETIPGWMRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQ+++DCDVIQ Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVVLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVA+ L ++ D S + VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASITGAWVAMASALNYLRD--EGVLKSDPILDQVAAVSCGVCDGVPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFV+T +G IVEVQ + E+ FS+ F + +LA+ +L LQK + Sbjct: 179 EDSEAEADSNFVLTGAGQIVEVQATGEKRGFSRAEFDRLFSLAEIGCTELFALQKAALE 237 >gi|227502998|ref|ZP_03933047.1| ribonuclease PH [Corynebacterium accolens ATCC 49725] gi|227076059|gb|EEI14022.1| ribonuclease PH [Corynebacterium accolens ATCC 49725] Length = 242 Score = 334 bits (857), Expect = 6e-90, Method: Composition-based stats. Identities = 105/238 (44%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA Sbjct: 66 EYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H++ S + L +AA+S G++ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--SEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N VM +SG VE+QG+ E F ++ ML++A+ ++LI QK + Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSELIAAQKAALG 241 >gi|296139019|ref|YP_003646262.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162] gi|296027153|gb|ADG77923.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162] Length = 260 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R +++TR ++ GS LV+FG+T +L TA++E VP W R + GW+TA Sbjct: 4 RADGRADDELRPVTITRGFTQNPAGSVLVEFGNTKVLCTASVELGVPGWRRGSGQGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE+ G+ GGR+ EI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPGATHERSRRESTKGKVGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++ + K Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTASITGAYVALCDAVTYL-GAAGKLTDPQPISCAIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+ E ATF++ ML+ A L +QK ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFARTTLDWMLDSALSGTEKLFAVQKQALA 240 >gi|227548661|ref|ZP_03978710.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291] gi|227079275|gb|EEI17238.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291] Length = 246 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 105/238 (44%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR ++MR + +TR + GS LV+FG T ++ TA++E VP + +++ GW+TA Sbjct: 10 RLDGRAFDEMRPVRITRGFTTNPAGSVLVEFGATRVMCTASVEVGVPRFKKDSGEGWLTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ VDL+ LG I +DCDV+QA Sbjct: 70 EYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLAQLGENTIQLDCDVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + + + L VAA+S G++ G+ +DL Y E Sbjct: 130 DGGTRTASITGAYVALADAIAFLSE--RGLVPGEPLLAPVAAVSAGLVDGHVALDLPYEE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N VM DSG+ VE+QG+ E F + AML +A+ +LI+ QK + Sbjct: 188 DSRAEVDLNVVMNDSGNFVEIQGTGEHGLFGRAELDAMLTVAEKGCRELIEAQKAALG 245 >gi|262040695|ref|ZP_06013932.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329996940|ref|ZP_08302637.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3] gi|259041961|gb|EEW42995.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539230|gb|EGF65259.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3] Length = 251 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT Sbjct: 14 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 74 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G I DL+Y Sbjct: 134 ADGGTRTASITGACVALADALNKLVAAGKL--KTNPMKGMVAAVSVGIVNGEAICDLEYI 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I +I QK + N Sbjct: 192 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 251 >gi|326318286|ref|YP_004235958.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375122|gb|ADX47391.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860] Length = 253 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 118/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR + +R + +TR + +AEGS LV+FG T +L TA++EE+VP R + GW+TA Sbjct: 12 RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTA 71 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA Sbjct: 72 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQA 131 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA HD + + + + + +AA+S G++ G P++DL+Y E Sbjct: 132 DGGTRTAAITGAWVAAHDAVSAL--LAGGKIAASPITAPLAAVSVGIVQGTPLLDLEYTE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D D N VM D G VEVQG+AE F++ +L+LA + LI LQ+ +S Sbjct: 190 DVQCDTDMNVVMMDGGRFVEVQGTAEGVAFTRSEMDRLLDLAAQGVDALIALQRQALS 247 >gi|229117982|ref|ZP_04247342.1| Ribonuclease PH [Bacillus cereus Rock1-3] gi|228665431|gb|EEL20913.1| Ribonuclease PH [Bacillus cereus Rock1-3] Length = 245 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|229818320|ref|ZP_04448601.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM 20098] gi|229784190|gb|EEP20304.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM 20098] Length = 254 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 107/240 (44%), Positives = 155/240 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+TA Sbjct: 15 RADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVTA 74 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG I IDCDV+QA Sbjct: 75 EYAMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENMIQIDCDVLQA 134 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA++TGA+VAL D L E + +VL V+A+S G++ G P++DL Y E Sbjct: 135 DGGTRTASVTGAYVALVDALDWAEKHHHIRSAKKVLTDCVSAVSVGVISGTPMLDLPYVE 194 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D N MT SG +E+QG+AE F++D +L+LA+ +L Q++ ++ + Sbjct: 195 DSAAMTDMNVAMTGSGAFIELQGTAEHRPFTRDELGTLLDLAEKGNKELQAAQREALAKD 254 >gi|83594970|ref|YP_428722.1| ribonuclease PH [Rhodospirillum rubrum ATCC 11170] gi|123525443|sp|Q2RN60|RNPH_RHORT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|83577884|gb|ABC24435.1| RNAse PH [Rhodospirillum rubrum ATCC 11170] Length = 240 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 134/240 (55%), Positives = 169/240 (70%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R I L SK+AEGSC+ +FGDTH+L TA++EE+VP W+R GW+T Sbjct: 1 MRPSGRAVDSLRSIVLEPGYSKHAEGSCMARFGDTHVLCTASIEERVPGWMRGGGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA GRQ GR+QEIQR+IGR+LRSV DL +G QI +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRTDREAARGRQSGRTQEIQRLIGRSLRSVTDLKKIGEIQIRLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+WVAL+ L E L HVAA+SCG+ G ++DLDY Sbjct: 121 ADGGTRTAAITGSWVALYQALARFEKLGLGAL--PPLTDHVAAVSCGLCDGVAVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST DANFV+T +G IVE+QG+AE + F+Q F +L LA+ I +L+ LQK +++ Sbjct: 179 EDSTAQADANFVLTGTGGIVEIQGTAETSPFAQAQFMELLALAQKGITELVALQKAALAS 238 >gi|317508770|ref|ZP_07966420.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974] gi|316252933|gb|EFV12353.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974] Length = 261 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 112/238 (47%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR +++MR + +TR + GS LV+FG T + A++ E VP W + T GW+TA Sbjct: 4 RLDGRHDDEMRPVKITRGFTGNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPAATATRNDRESVRGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + S + Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAFVALSDAVTWL-AASGRLADPQPISCAIAAVSVGLVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+AE ATF + +L+LA I L+ Q++ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTAEGATFHRKTLDKLLDLAFAGIEQLVVAQREALA 240 >gi|306836769|ref|ZP_07469730.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726] gi|304567356|gb|EFM42960.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726] Length = 242 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 104/238 (43%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 6 RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R++GR+LR+ VDL LG I +DCDV+QA Sbjct: 66 EYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H++ + + L +AA+S G++ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N VM +SG VE+QG+ E F ++ ML++A+ ++LI QK + Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSELIAAQKAALG 241 >gi|296328289|ref|ZP_06870818.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154593|gb|EFG95381.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 434 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 110/241 (45%), Positives = 157/241 (65%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T GW+T Sbjct: 2 LREDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+IGRALR+ +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + L +VAAIS G + +VDL Y Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEEDPLISNVAAISVGKINSNLMVDLKYS 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED +VD N +M +EVQG+ E +TF++ +L+LA++ I LI+LQ +I+ Sbjct: 180 EDFAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239 Query: 241 E 241 E Sbjct: 240 E 240 >gi|213579701|ref|ZP_03361527.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 238 Score = 334 bits (857), Expect = 8e-90, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ +QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVAMQKAALEN 238 >gi|167628594|ref|YP_001679093.1| ribonuclease ph [Heliobacterium modesticaldum Ice1] gi|167591334|gb|ABZ83082.1| ribonuclease ph [Heliobacterium modesticaldum Ice1] Length = 243 Score = 334 bits (857), Expect = 8e-90, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GRQ +Q+R + + R+ + EGS L+ G+T ++ TAT+EEKVP + + + GW+TA Sbjct: 3 RVDGRQADQLRPVQIQRQYLIHPEGSVLITVGNTKVICTATVEEKVPPFQKGSGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +RE G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQA Sbjct: 63 EYGMLPRATGTRTQREVTRGKATGRTMEIQRLIGRALRSVVDLQRLGERTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + NK + +AA+S G + G ++DL Y E Sbjct: 123 DGGTRTASITGAFVALKDACRRL--LKNKQIQKDPIIEALAAVSVGKVAGELLLDLAYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ +VD N VMT G VE+QG+AE F +D AML LA+ I +LI+ Q ++ Sbjct: 181 DAKAEVDMNVVMTAGGRFVELQGTAEGTPFGRDELDAMLRLAEKGICELIEAQNQALAE 239 >gi|146278691|ref|YP_001168850.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17025] gi|166228309|sp|A4WVY1|RNPH_RHOS5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145556932|gb|ABP71545.1| RNAse PH [Rhodobacter sphaeroides ATCC 17025] Length = 237 Score = 333 bits (856), Expect = 8e-90, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ +D SALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATTSRNRREATAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKAG--IVVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IADL+ QK + Sbjct: 179 EDSTAGTDGNFVLTGRQRLIEVQMSAEGASFSRDEMGQLLDLAEAGIADLVAAQKAALG 237 >gi|228923234|ref|ZP_04086524.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836440|gb|EEM81791.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 245 Score = 333 bits (856), Expect = 9e-90, Method: Composition-based stats. Identities = 113/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+V+ Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEVLG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|56694936|ref|YP_165281.1| ribonuclease PH [Ruegeria pomeroyi DSS-3] gi|81350765|sp|Q5LWF6|RNPH_SILPO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56676673|gb|AAV93339.1| ribonuclease PH [Ruegeria pomeroyi DSS-3] Length = 237 Score = 333 bits (856), Expect = 9e-90, Method: Composition-based stats. Identities = 125/239 (52%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + S L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVI--SDPLVDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF+MT SG ++EVQ SAE + F++ +L LA+ + +L+ Q + Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFNRAQLDQLLGLAEKGVGELVAAQMAATA 237 >gi|229175161|ref|ZP_04302677.1| Ribonuclease PH [Bacillus cereus MM3] gi|228608297|gb|EEK65603.1| Ribonuclease PH [Bacillus cereus MM3] Length = 245 Score = 333 bits (856), Expect = 9e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGRERTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 VEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|229087047|ref|ZP_04219199.1| Ribonuclease PH [Bacillus cereus Rock3-44] gi|228696240|gb|EEL49073.1| Ribonuclease PH [Bacillus cereus Rock3-44] Length = 245 Score = 333 bits (856), Expect = 9e-90, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ ++R I L K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREAAELRHIHLHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEDQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEHGILQLVEKQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|257468117|ref|ZP_05632213.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185] gi|317062402|ref|ZP_07926887.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185] gi|313688078|gb|EFS24913.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185] Length = 254 Score = 333 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 111/240 (46%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ + +REI +T+ + YAEGS L++FG+T ++ TA++ EKVP ++R GW+T Sbjct: 17 LREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASVSEKVPPFMRGQGKGWLT 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+TG R +RE+ G+ GR+ EIQR+IGRALR+ VDL LG R I IDCDVIQ Sbjct: 77 AEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQ 136 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +I+G ++AL ++ + ++ + +VAAIS G++ G P++DL Y Sbjct: 137 ADGGTRTTSISGGFIALALAVKKLMK--DRVLNVNPIVSNVAAISVGIVRGTPMLDLMYT 194 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N VM G VEVQG+ E AT+++ +++LA+ I ++I+LQ +VI Sbjct: 195 EDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNELIDLAEVGIKEIIRLQNEVIGE 254 >gi|326201646|ref|ZP_08191517.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782] gi|325988246|gb|EGD49071.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782] Length = 240 Score = 333 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 111/238 (46%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR Q+R + + R K+AEGS L++ GDT ++ TA++EE++P + +++ GWIT Sbjct: 2 LRHDGRSNTQLRPVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +R+ + GRS EIQR+IGR+LR++VDL LG R I +DCDVIQ Sbjct: 62 AEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL D + + N + G VAA S G++ G ++DL Y Sbjct: 122 ADGGTRTASITGGYVALADACRTLVK--NGLISKTPIIGIVAATSVGIVNGEELLDLCYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N +MTD G +E+Q + E+++FS+ +LNLA+ I +LIK Q +VI Sbjct: 180 EDSNAEVDMNVIMTDKGEFIELQATGEKSSFSKKQLDKLLNLAESGIHELIKAQNEVI 237 >gi|221640718|ref|YP_002526980.1| ribonuclease PH [Rhodobacter sphaeroides KD131] gi|254808599|sp|B9KPU4|RNPH_RHOSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|221161499|gb|ACM02479.1| Ribonuclease PH [Rhodobacter sphaeroides KD131] Length = 237 Score = 333 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR +S+ V K+AEGSCL++ G+TH+L +A++E+K P +++NT GW+T Sbjct: 1 MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + +VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKAG--IIVSDPIVDNVAAVSCGIYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D NFV+T ++EVQ SAE A+FS+D +L+LA+ IA+L+ QK + Sbjct: 179 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 237 >gi|261341748|ref|ZP_05969606.1| hypothetical protein ENTCAN_08227 [Enterobacter cancerogenus ATCC 35316] gi|288316116|gb|EFC55054.1| tRNA nucleotidyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 238 Score = 333 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPSGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLVAAGKL--KTNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + ++L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLSLLALARGGIESIVTTQKAALEN 238 >gi|120612226|ref|YP_971904.1| ribonuclease PH [Acidovorax citrulli AAC00-1] gi|120590690|gb|ABM34130.1| RNAse PH [Acidovorax citrulli AAC00-1] Length = 253 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 118/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR + +R + +TR + +AEGS LV+FG T +L TA++EE+VP R + GW+TA Sbjct: 12 RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTA 71 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA Sbjct: 72 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQA 131 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVA HD + + + + + +AA+S G++ G P++DL+Y E Sbjct: 132 DGGTRTAAITGAWVAAHDAVSALLE--GGKIAASPITAPLAAVSVGIVQGTPLLDLEYTE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D D N VM D G VEVQG+AE F++ +L+LA + LI LQ+ +S Sbjct: 190 DVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIALQRQALS 247 >gi|238063132|ref|ZP_04607841.1| ribonuclease PH [Micromonospora sp. ATCC 39149] gi|237884943|gb|EEP73771.1| ribonuclease PH [Micromonospora sp. ATCC 39149] Length = 241 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R ++L+R S + EGS LV+FG T +L TA++ E VP W + + GW+TA Sbjct: 3 RPDGRLPDQLRPVTLSRGWSTHPEGSVLVEFGGTRVLCTASVTEGVPRWRKGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAA+TGA+VALHD + + + +V+ VAA+S G++ G +DL Y Sbjct: 123 DGGTRTAAVTGAYVALHDAVSWLAARKALAGKPEKVMHRSVAAVSVGVIAGEARLDLCYE 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED +VD N V T SG VEVQG+ E F++D A+L+LA A+L + Q+ +S Sbjct: 183 EDVAAEVDMNVVCTGSGEFVEVQGTGESGVFARDQLDALLDLAVAGCAELAEAQRKALS 241 >gi|297529172|ref|YP_003670447.1| ribonuclease PH [Geobacillus sp. C56-T3] gi|297252424|gb|ADI25870.1| ribonuclease PH [Geobacillus sp. C56-T3] Length = 460 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 118/241 (48%), Positives = 154/241 (63%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT Sbjct: 1 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VAL L + + L ++ +AA S G+ + I+DLDY Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGKLEAL--PIRDFLAATSVGIDPEHGVILDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ + Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRCALG 238 Query: 240 N 240 Sbjct: 239 E 239 >gi|114762203|ref|ZP_01441671.1| ribonuclease PH [Pelagibaca bermudensis HTCC2601] gi|114545227|gb|EAU48230.1| ribonuclease PH [Roseovarius sp. HTCC2601] Length = 237 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 173/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ V+K+AEGSCL+K GDTH++ TA+LE +VP +I+ + GW+T Sbjct: 1 MRPSGRDLSEMRPVSIETGVTKHAEGSCLIKMGDTHVICTASLEPRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTGSRMRREATTGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITG WVAL + + + + L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGDVI--TDPLISPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF++ G ++EVQ SAE ATFS+D +L+LA+ +A L++ QK + Sbjct: 179 EDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRDQMGTLLDLAESGVAQLVEAQKAATA 237 >gi|260429579|ref|ZP_05783556.1| ribonuclease PH [Citreicella sp. SE45] gi|260420202|gb|EEX13455.1| ribonuclease PH [Citreicella sp. SE45] Length = 296 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 173/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ ++K+AEGSCL+K GDT ++ TA+LEE+VP +I+ + GW+T Sbjct: 60 MRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASLEERVPPFIKGSGLGWVT 119 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA SG+QGGR+ EIQR+IGR+LR+ VD ALG RQI IDCDVIQ Sbjct: 120 AEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 179 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + + L VAA+SCG+ G PI+DLDY Sbjct: 180 ADGGTRCASITGGWVALRLAVNKLMKAGDV--KTDPLVSPVAAVSCGIYAGQPILDLDYP 237 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF++ G ++EVQ SAE ATFS+ +++LA+ +A L++ QK ++ Sbjct: 238 EDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQLVEAQKAAVA 296 >gi|227552907|ref|ZP_03982956.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22] gi|227177961|gb|EEI58933.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22] Length = 316 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R ++R+I++ V K+ EGS ++ FGDT ++ +AT+EEKVP ++R GW+ Sbjct: 2 IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I++DCDVIQ Sbjct: 62 AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + H+ +K H+AA+S G+L GY ++DLDY Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG VE+QG+ E ATFS D AML K I +LI QK+ + Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238 >gi|292486561|ref|YP_003529429.1| ribonuclease PH [Erwinia amylovora CFBP1430] gi|292897799|ref|YP_003537168.1| ribonuclease PH [Erwinia amylovora ATCC 49946] gi|291197647|emb|CBJ44742.1| ribonuclease PH [Erwinia amylovora ATCC 49946] gi|291551976|emb|CBA19013.1| ribonuclease PH [Erwinia amylovora CFBP1430] gi|312170622|emb|CBX78885.1| ribonuclease PH [Erwinia amylovora ATCC BAA-2158] Length = 238 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L H+ + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNHLVFIGKL--KANPMKGMVAAISVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I L+ QK + Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAAL 236 >gi|88797478|ref|ZP_01113067.1| ribonuclease PH [Reinekea sp. MED297] gi|88779650|gb|EAR10836.1| ribonuclease PH [Reinekea sp. MED297] Length = 239 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 116/240 (48%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+RE++L R +K+AEGS LV FGDT ++ TA+++ VP +++ GW+T Sbjct: 1 MRPSGRQTDQLREVTLQRHFTKHAEGSVLVSFGDTQVICTASVDSGVPRFMKGEGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG+R +REA G+Q GR+ EI R+IGR+LR+ +D+ LG + IDCDVIQ Sbjct: 61 AEYGMLPRATGSRNQREAARGKQTGRTVEIGRLIGRSLRAAIDMELLGENTVTIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + M + +K +VAA+S G+ ++DLDY Sbjct: 121 ADGGTRTASITGAFVALSDAINGM--LAEGTLKKNPIKHNVAAVSVGIWQDTAVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST + D N V+ +G VE+QG+AE F D AML+LA+ DL ++Q ++ Sbjct: 179 EDSTAETDLNVVLASNGGFVEIQGTAEGEPFMPDQLKAMLDLAEKGGRDLFEIQNRALTE 238 >gi|315079375|gb|EFT51373.1| ribonuclease PH [Propionibacterium acnes HL053PA2] Length = 254 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ SG VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLASGGCATLKQAQSEALG 251 >gi|194017374|ref|ZP_03055986.1| ribonuclease PH [Bacillus pumilus ATCC 7061] gi|194011242|gb|EDW20812.1| ribonuclease PH [Bacillus pumilus ATCC 7061] Length = 242 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 159/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL R +++R+I + + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASIEDRVPPFLRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ +Q + + + ++AAIS G+ ++DL+Y Sbjct: 121 ADGGTRTASITGAFVAMTLAIQKLR--AEGVIKQNPITDYLAAISVGIDSQQGLLLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N +MT +G VE+QG+ E ATFS++ +L+LA+ I +LI+ QK V Sbjct: 179 EEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAVTG 238 Query: 240 NEV 242 + Sbjct: 239 EVI 241 >gi|319651759|ref|ZP_08005885.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2] gi|317396578|gb|EFV77290.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2] Length = 256 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 115/243 (47%), Positives = 158/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ Q+R I + K+ EGS L+ GDT ++ TA+++E+VP ++R GWIT Sbjct: 1 MRADGREPKQLRPIHIESDYLKHPEGSVLITVGDTKVICTASIDERVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + +DCDVIQ Sbjct: 61 AEYSMLPRATEQRNIRESAKGKISGRTMEIQRLIGRALRAVVDLDALGERTVWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + S+K + +AA S G+L VDL+Y Sbjct: 121 ADGGTRTASITGAFVAMSQAMDKL--YSSKKLAHYPINDFLAATSVGILKNKQAAVDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N VMT SG VE+QG+ E ATFS ML A++ I++L + QK + Sbjct: 179 IEDSSAEVDMNVVMTGSGEFVELQGTGEEATFSYTQLQEMLGAAQEGISELFEFQKAALG 238 Query: 240 NEV 242 ++ Sbjct: 239 EKI 241 >gi|157373079|ref|YP_001481068.1| ribonuclease PH [Serratia proteamaculans 568] gi|166991086|sp|A8GLF0|RNPH_SERP5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157324843|gb|ABV43940.1| ribonuclease PH [Serratia proteamaculans 568] Length = 238 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + +N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNAL--VANGKLKANPMKGLVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS D A+L LA+ I + + QK +++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIDTIFQAQKAALAD 238 >gi|289427808|ref|ZP_06429517.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165] gi|295131196|ref|YP_003581859.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137] gi|289158990|gb|EFD07185.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165] gi|291375935|gb|ADD99789.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137] gi|313773261|gb|EFS39227.1| ribonuclease PH [Propionibacterium acnes HL074PA1] gi|313793456|gb|EFS41507.1| ribonuclease PH [Propionibacterium acnes HL110PA1] gi|313801145|gb|EFS42408.1| ribonuclease PH [Propionibacterium acnes HL110PA2] gi|313808494|gb|EFS46959.1| ribonuclease PH [Propionibacterium acnes HL087PA2] gi|313812067|gb|EFS49781.1| ribonuclease PH [Propionibacterium acnes HL083PA1] gi|313812337|gb|EFS50051.1| ribonuclease PH [Propionibacterium acnes HL025PA1] gi|313819229|gb|EFS56943.1| ribonuclease PH [Propionibacterium acnes HL046PA2] gi|313821099|gb|EFS58813.1| ribonuclease PH [Propionibacterium acnes HL036PA1] gi|313823475|gb|EFS61189.1| ribonuclease PH [Propionibacterium acnes HL036PA2] gi|313827022|gb|EFS64736.1| ribonuclease PH [Propionibacterium acnes HL063PA1] gi|313829864|gb|EFS67578.1| ribonuclease PH [Propionibacterium acnes HL007PA1] gi|313834706|gb|EFS72420.1| ribonuclease PH [Propionibacterium acnes HL056PA1] gi|313837925|gb|EFS75639.1| ribonuclease PH [Propionibacterium acnes HL086PA1] gi|314925916|gb|EFS89747.1| ribonuclease PH [Propionibacterium acnes HL036PA3] gi|314960891|gb|EFT04992.1| ribonuclease PH [Propionibacterium acnes HL002PA2] gi|314963345|gb|EFT07445.1| ribonuclease PH [Propionibacterium acnes HL082PA1] gi|314974022|gb|EFT18118.1| ribonuclease PH [Propionibacterium acnes HL053PA1] gi|314975448|gb|EFT19543.1| ribonuclease PH [Propionibacterium acnes HL045PA1] gi|314979453|gb|EFT23547.1| ribonuclease PH [Propionibacterium acnes HL072PA2] gi|314984208|gb|EFT28300.1| ribonuclease PH [Propionibacterium acnes HL005PA1] gi|314988437|gb|EFT32528.1| ribonuclease PH [Propionibacterium acnes HL005PA2] gi|314988644|gb|EFT32735.1| ribonuclease PH [Propionibacterium acnes HL005PA3] gi|315083401|gb|EFT55377.1| ribonuclease PH [Propionibacterium acnes HL027PA2] gi|315086804|gb|EFT58780.1| ribonuclease PH [Propionibacterium acnes HL002PA3] gi|315089451|gb|EFT61427.1| ribonuclease PH [Propionibacterium acnes HL072PA1] gi|315097778|gb|EFT69754.1| ribonuclease PH [Propionibacterium acnes HL038PA1] gi|327325397|gb|EGE67202.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA2] gi|327328264|gb|EGE70028.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA3] gi|327443690|gb|EGE90344.1| ribonuclease PH [Propionibacterium acnes HL043PA1] gi|327449227|gb|EGE95881.1| ribonuclease PH [Propionibacterium acnes HL043PA2] gi|327450179|gb|EGE96833.1| ribonuclease PH [Propionibacterium acnes HL013PA2] gi|327451243|gb|EGE97897.1| ribonuclease PH [Propionibacterium acnes HL092PA1] gi|328756765|gb|EGF70381.1| ribonuclease PH [Propionibacterium acnes HL020PA1] gi|328761039|gb|EGF74591.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL099PA1] gi|332676073|gb|AEE72889.1| ribonuclease PH [Propionibacterium acnes 266] Length = 254 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ SG VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251 >gi|152972490|ref|YP_001337636.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206579777|ref|YP_002235994.1| ribonuclease PH [Klebsiella pneumoniae 342] gi|238897086|ref|YP_002921832.1| ribonuclease PH [Klebsiella pneumoniae NTUH-K2044] gi|290511794|ref|ZP_06551162.1| ribonuclease PH [Klebsiella sp. 1_1_55] gi|166228287|sp|A6TFN5|RNPH_KLEP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736914|sp|B5XTF9|RNPH_KLEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|150957339|gb|ABR79369.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568835|gb|ACI10611.1| ribonuclease PH [Klebsiella pneumoniae 342] gi|238549414|dbj|BAH65765.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|289775584|gb|EFD83584.1| ribonuclease PH [Klebsiella sp. 1_1_55] Length = 238 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLVAAGKL--KTNPMKGMVAAVSVGIVNGEAICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I +I QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 238 >gi|167947111|ref|ZP_02534185.1| ribonuclease PH [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 239 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 127/223 (56%), Positives = 165/223 (73%), Gaps = 2/223 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +Q+R I TR +K+AEGS LV+FGDT ++ TA++EE+VP W+R GW+T Sbjct: 1 MRPSGRQPDQLRPIRFTRHYTKHAEGSVLVEFGDTKVICTASVEERVPGWMRGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+IGR+LR+ +DL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTDSRMGREASRGKQGGRTMEIQRLIGRSLRAAIDLQALGERSIALDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAW+ALHD +QH+ + + G VA++S G+ G PI+DLDY Sbjct: 121 ADGGTRTASITGAWIALHDAVQHI--LQQDLLKTDPMIGPVASVSVGVHKGTPILDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 EDS+ + D N VM D G +EVQG+AE A +S+ AML+LA Sbjct: 179 EDSSAETDMNVVMNDQGGFIEVQGTAEAAAYSRQELDAMLDLA 221 >gi|323359606|ref|YP_004226002.1| RNase PH [Microbacterium testaceum StLB037] gi|323275977|dbj|BAJ76122.1| RNase PH [Microbacterium testaceum StLB037] Length = 241 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 154/239 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +++ R S +AEGS L+ FG T +L TA+ VP W+ GW+TA Sbjct: 3 RKDGRTTDQLRPVTIERGWSAHAEGSALITFGGTKVLCTASFTNGVPRWLTGKGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R RE++ G+ GGR+ EI R+IGRALR+VVD ALG I+IDCDV+QA Sbjct: 63 EYAMLPRATNSRNDRESIKGKVGGRTHEISRLIGRALRAVVDTKALGENTIVIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q S+VL V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIAWGREKKFIAQRSEVLIDSVSAVSVGIIDGEPMLDLAYVE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V+T G VEVQG+AE A F + +L+LA + A+L +Q + Sbjct: 183 DVRAETDMNVVVTGRGLFVEVQGTAEGAPFDKAELDRLLDLAVNGCAELRGIQTAALEG 241 >gi|161611257|ref|YP_296683.2| ribonuclease PH [Ralstonia eutropha JMP134] Length = 239 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T Sbjct: 1 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q Sbjct: 61 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA HD + M + + ++ VAA+S GM+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAFVAAHDAISTM--LRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG VEVQG+AE A FS+ AM LA+D IA L++ Q+ + Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQALG 237 >gi|16762575|ref|NP_458192.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767019|ref|NP_462634.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29144064|ref|NP_807406.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415624|ref|YP_152699.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161505731|ref|YP_001572843.1| ribonuclease PH [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|167549018|ref|ZP_02342777.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167995207|ref|ZP_02576297.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233258|ref|ZP_02658316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235339|ref|ZP_02660397.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241913|ref|ZP_02666845.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260512|ref|ZP_02682485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464958|ref|ZP_02698850.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818436|ref|ZP_02830436.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442896|ref|YP_002042983.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448918|ref|YP_002047765.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469845|ref|ZP_03075829.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735193|ref|YP_002116668.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249680|ref|YP_002148665.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264642|ref|ZP_03164716.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364551|ref|YP_002144188.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242269|ref|YP_002217694.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388670|ref|ZP_03215282.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928479|ref|ZP_03219678.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858971|ref|YP_002245622.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052654|ref|ZP_03345532.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425224|ref|ZP_03357974.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213615659|ref|ZP_03371485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647931|ref|ZP_03377984.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852853|ref|ZP_03382385.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238910231|ref|ZP_04654068.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289809748|ref|ZP_06540377.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824115|ref|ZP_06543712.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|61234148|sp|P0A2C3|RNPH_SALTY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61234155|sp|P0A2C4|RNPH_SALTI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|81599223|sp|Q5PC25|RNPH_SALPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043772|sp|A9MKN2|RNPH_SALAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736931|sp|B5EXE7|RNPH_SALA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736932|sp|B5FM66|RNPH_SALDC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736933|sp|B5R5G7|RNPH_SALEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736935|sp|B4T9Y6|RNPH_SALHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736936|sp|B4SXE4|RNPH_SALNS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736937|sp|B5BI17|RNPH_SALPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736938|sp|B4TZY4|RNPH_SALSV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|25289292|pir||AG0970 RNase PH [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16422302|gb|AAL22593.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504880|emb|CAD03259.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhi] gi|29139700|gb|AAO71266.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129881|gb|AAV79387.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|160867078|gb|ABX23701.1| hypothetical protein SARI_03907 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|194401559|gb|ACF61781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407222|gb|ACF67441.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456209|gb|EDX45048.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710695|gb|ACF89916.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632399|gb|EDX50883.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096028|emb|CAR61615.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213383|gb|ACH50780.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242897|gb|EDY25517.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291458|gb|EDY30810.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936785|gb|ACH74118.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605768|gb|EDZ04313.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321912|gb|EDZ07110.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325541|gb|EDZ13380.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327076|gb|EDZ13840.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332556|gb|EDZ19320.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338962|gb|EDZ25726.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344359|gb|EDZ31123.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350221|gb|EDZ36852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710774|emb|CAR35135.1| RNase PH [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248882|emb|CBG26736.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995995|gb|ACY90880.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160271|emb|CBW19794.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914760|dbj|BAJ38734.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088154|emb|CBY97916.1| RNase PH [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226787|gb|EFX51837.1| Ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322612900|gb|EFY09852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618965|gb|EFY15852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625258|gb|EFY22085.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630074|gb|EFY26847.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634266|gb|EFY31001.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635833|gb|EFY32542.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643029|gb|EFY39606.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645043|gb|EFY41574.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649857|gb|EFY46280.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653064|gb|EFY49399.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661117|gb|EFY57345.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662394|gb|EFY58607.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667272|gb|EFY63438.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674351|gb|EFY70444.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678441|gb|EFY74502.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680947|gb|EFY76981.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687117|gb|EFY83090.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323132094|gb|ADX19524.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195841|gb|EFZ81013.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198242|gb|EFZ83348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200860|gb|EFZ85930.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206614|gb|EFZ91572.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210473|gb|EFZ95359.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216239|gb|EGA00967.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220461|gb|EGA04915.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225325|gb|EGA09559.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228439|gb|EGA12570.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234260|gb|EGA18348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237245|gb|EGA21312.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244764|gb|EGA28768.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245861|gb|EGA29851.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250956|gb|EGA34832.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257296|gb|EGA40995.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262220|gb|EGA45781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264569|gb|EGA48073.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268858|gb|EGA52316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625479|gb|EGE31824.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332990583|gb|AEF09566.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 238 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238 >gi|218232088|ref|YP_002369288.1| ribonuclease PH [Bacillus cereus B4264] gi|226736886|sp|B7HEB3|RNPH_BACC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|218160045|gb|ACK60037.1| tRNA nucleotidyltransferase [Bacillus cereus B4264] Length = 245 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++ ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREKIELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G++ ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I LI +QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|261377578|ref|ZP_05982151.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685] gi|269146325|gb|EEZ72743.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685] Length = 242 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 116/234 (49%), Positives = 168/234 (71%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM Sbjct: 9 RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VALH + + S+ ++ VAAIS G++ G P++DLDY EDS Sbjct: 129 RTASITGAFVALHIAVGKL--ISDGILTENPIREAVAAISVGIVGGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEQGIRELVRYQQNALS 240 >gi|85706900|ref|ZP_01037990.1| ribonuclease PH [Roseovarius sp. 217] gi|85668511|gb|EAQ23382.1| ribonuclease PH [Roseovarius sp. 217] Length = 238 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 127/237 (53%), Positives = 172/237 (72%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ V K+AEGSCL+K GDTH+L TAT+EE+VP +++ + GW+T Sbjct: 1 MRPSGRNLSEMRPVSIETGVLKHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTNSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + S L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDVI--SDPLIDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NF+MT S ++EVQ SAE +T+S+D +L+LA+ + L+ Q++ Sbjct: 179 EDSEAGVDGNFIMTGSKRLIEVQMSAEGSTYSRDQMNTLLDLAEQGVDLLVAKQREA 235 >gi|317403008|gb|EFV83546.1| ribonuclease PH [Achromobacter xylosoxidans C54] Length = 244 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 120/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +++R SL R ++YAEGS LVK G+TH+L TA++ EKVP +++ GW+TA Sbjct: 9 RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA Sbjct: 69 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVA D + + + ++ VAA+S G++ G P++DLDY E Sbjct: 129 DGGTRCASITGAWVAASDAVALLMQRGDLAV--NPIRDAVAAVSVGLVQGRPVLDLDYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N +MT G VEVQG+ E ATF++ AML LA++ IA L++ Q+ ++ Sbjct: 187 DSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDAMLGLAENGIAGLVRAQRAALA 244 >gi|170728887|ref|YP_001762913.1| ribonuclease PH [Shewanella woodyi ATCC 51908] gi|226736940|sp|B1KL12|RNPH_SHEWM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|169814234|gb|ACA88818.1| ribonuclease PH [Shewanella woodyi ATCC 51908] Length = 237 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q R +++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPNDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGR+LR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G PI DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKNNPLKFLIAAVSVGIYKGEPICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G ++E+QG+AE FS + ++L LAK I +++ +QK +S Sbjct: 179 EDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDVQKAALS 237 >gi|288933001|ref|YP_003437060.1| ribonuclease PH [Klebsiella variicola At-22] gi|288887730|gb|ADC56048.1| ribonuclease PH [Klebsiella variicola At-22] Length = 238 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLAAAGKL--KTNPMKGMVAAVSVGIVNGEAICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I +I QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 238 >gi|310286881|ref|YP_003938139.1| rph Ribonuclease PH [Bifidobacterium bifidum S17] gi|309250817|gb|ADO52565.1| rph Ribonuclease PH [Bifidobacterium bifidum S17] Length = 243 Score = 332 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 109/239 (45%), Positives = 155/239 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 3 IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG QI IDCDV+Q Sbjct: 63 AEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ E + +VLK V+A+S G++ G P++DL Y Sbjct: 123 ADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYI 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 183 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQRAALS 241 >gi|295691344|ref|YP_003595037.1| ribonuclease PH [Caulobacter segnis ATCC 21756] gi|295433247|gb|ADG12419.1| ribonuclease PH [Caulobacter segnis ATCC 21756] Length = 238 Score = 332 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 174/240 (72%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +QMR ++L V++YAEGSCL+ FG T +L TAT+EE +P W+RN GW+T Sbjct: 1 MRPSERAPDQMRAVTLETGVNRYAEGSCLISFGHTKVLVTATVEESLPGWLRNKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATHSRGRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL +++ D + + G VAA+SCG+ P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALRLATKYLLD--EGVLKTDPIVGQVAAVSCGVFNDTPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ + D+NFV+T++G IVE+Q + E+ FS+ F A+ LA+ I +L LQ+ I Sbjct: 179 EDSSAEADSNFVLTNAGDIVEIQATGEKRGFSRAEFEALFGLAEKGIGELFTLQRAAIGG 238 >gi|227833921|ref|YP_002835628.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975] gi|262184924|ref|ZP_06044345.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975] gi|227454937|gb|ACP33690.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975] Length = 242 Score = 332 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 102/238 (42%), Positives = 153/238 (64%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TR + GS LV+FG+T ++ TA++E VP + +++ GW+TA Sbjct: 6 RADGRALDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ RE++ G+ GR+ EI R++GR+LR+ VDLS LG I +DCDV+QA Sbjct: 66 EYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + ++++ + L +AA+S G++ G+ +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAYLKE--EGVVPGEPLLDPIAAVSVGIIDGHVCLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N VM + G VE+QG+ E F + ML++A+ A LI QK + Sbjct: 184 DSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRAELNDMLDVAQAGCAQLIDAQKAALG 241 >gi|254295455|ref|YP_003061478.1| ribonuclease PH [Hirschia baltica ATCC 49814] gi|254043986|gb|ACT60781.1| ribonuclease PH [Hirschia baltica ATCC 49814] Length = 243 Score = 332 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 131/239 (54%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R S R +RE+SL S+YAEGSCLVKFG TH+L TA+ VP W++ T GW+TA Sbjct: 6 RPSKRAPESLREVSLEVGKSRYAEGSCLVKFGHTHVLCTASWTGDVPRWMKGTGKGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R +REA +G+Q GR+QEIQR+IGRALRSV DL ALG QI IDCDVIQA Sbjct: 66 EYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRALRSVTDLEALGENQITIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG +VAL + ++++ + L AAISCG+ P++DLDY E Sbjct: 126 DGGTRTAAITGGYVALALAINYLKE--EGIISTNPLVSQAAAISCGVYQDVPVLDLDYAE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VDANF+M+ G I+EVQG+ E FS++ F AM +LA +L LQK I N Sbjct: 184 DSNAMVDANFIMSSDGRIIEVQGTGEERPFSREEFLAMSDLADAGCKELFALQKAAIDN 242 >gi|261400742|ref|ZP_05986867.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970] gi|269209512|gb|EEZ75967.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970] Length = 242 Score = 332 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 116/234 (49%), Positives = 168/234 (71%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM Sbjct: 9 RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VALH + + S+ ++ VAAIS G++ G P++DLDY EDS Sbjct: 129 RTASITGAFVALHIAVGKL--ISDGILTENPIREAVAAISAGIVGGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240 >gi|296118694|ref|ZP_06837270.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM 20306] gi|295968183|gb|EFG81432.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM 20306] Length = 242 Score = 332 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 107/238 (44%), Positives = 158/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R + +TR + GS LV+FG+T ++ TA++E+ VP + +++ GW+TA Sbjct: 6 RADGRDLDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEQGVPRFKKDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R+ RE++ G+ GR+ EI R+IGR+LR+ VDLSALG I +DCDV+QA Sbjct: 66 EYAMLPSATHDRMPRESMKGKVKGRTHEISRLIGRSLRAAVDLSALGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + +++ + L +AA+S GM+ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAVLKE--QGVVPGEPLLQPIAAVSVGMVEGNVCLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N VM +SG+ VEVQG+ E F +D AML++A+ +LI Q+ + Sbjct: 184 DSRAEVDLNVVMQESGNFVEVQGTGENGLFGRDELNAMLDVAQKGCVELIAAQRAALG 241 >gi|302391286|ref|YP_003827106.1| RNAse PH [Acetohalobium arabaticum DSM 5501] gi|302203363|gb|ADL12041.1| RNAse PH [Acetohalobium arabaticum DSM 5501] Length = 251 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 114/241 (47%), Positives = 164/241 (68%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR +++RE+++TR +KYAEGS L+ GDT ++ A++EE VP ++R+ GWIT Sbjct: 1 MRVDGRDRDELREVTITRDFTKYAEGSILISTGDTKVICNASVEESVPYFLRDQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T +R R A G+ GR++EIQR+IGRA+RSV+DL LG R I +DCDVIQ Sbjct: 61 GEYAMLPRATESRNIRAAAKGKISGRTKEIQRLIGRAMRSVIDLDKLGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D L ++ + +K +AA S G++ G P +DL Y Sbjct: 121 ADGGTRTASITGAFVALIDALDYLLEKDKI--DEMPVKSFIAATSVGIIDGAPALDLCYK 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ VD N VMT+ G I+E+QG+ E F+Q ++ L + I +LI+ QK+ + + Sbjct: 179 EDSSAQVDLNLVMTEEGRIIEIQGTGEENPFTQQELDKLVELGEKGIKELIRYQKEALGD 238 Query: 241 E 241 + Sbjct: 239 K 239 >gi|315104464|gb|EFT76440.1| ribonuclease PH [Propionibacterium acnes HL050PA2] Length = 254 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251 >gi|295095228|emb|CBK84318.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 238 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLVAAGKL--KTNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALEN 238 >gi|157693251|ref|YP_001487713.1| ribonuclease PH [Bacillus pumilus SAFR-032] gi|166991082|sp|A8FFY6|RNPH_BACP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157682009|gb|ABV63153.1| tRNA nucleotidyltransferase [Bacillus pumilus SAFR-032] Length = 242 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 111/243 (45%), Positives = 159/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL R +++R+I + + EGS L+ G+T ++ A++E++VP ++R GWIT Sbjct: 1 MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASIEDRVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ +Q + Q + ++AAIS G+ ++DL+Y Sbjct: 121 ADGGTRTASITGAFVAMTLAIQKLRAEGAIKQ--NPITDYLAAISVGIDSQQGLLLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N +MT +G VE+QG+ E ATFS++ +L+LA+ I +LI+ QK V Sbjct: 179 EEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAVTG 238 Query: 240 NEV 242 + Sbjct: 239 EVI 241 >gi|282855012|ref|ZP_06264344.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139] gi|282581600|gb|EFB86985.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139] gi|314924268|gb|EFS88099.1| ribonuclease PH [Propionibacterium acnes HL001PA1] gi|315106207|gb|EFT78183.1| ribonuclease PH [Propionibacterium acnes HL030PA1] Length = 254 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251 >gi|315079990|gb|EFT51966.1| ribonuclease PH [Propionibacterium acnes HL078PA1] Length = 254 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ SG VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251 >gi|307244059|ref|ZP_07526178.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678] gi|306492583|gb|EFM64617.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678] Length = 486 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 103/239 (43%), Positives = 158/239 (66%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R +++TR + ++ GS L++ G+T ++ TA++E+ VP +++ T GWI+A Sbjct: 37 RPDGRQYDQLRPVNITRNYTMHSAGSVLIEVGNTKVICTASVEDGVPGFMKGTGKGWISA 96 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +R++ GR GRSQEIQR+IGR++RSVV+L LG R I IDCDVIQA Sbjct: 97 EYSMLPSATETRKRRDSSKGRVDGRSQEIQRLIGRSIRSVVNLEDLGERTIWIDCDVIQA 156 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L + + ++ L +AA+S G++ +D+ Y E Sbjct: 157 DGGTRTASITGAFVALADALYKLYQAGDIKKM--PLTSMLAAVSVGVVDSQVCLDICYQE 214 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N +M + G +E+Q + E F++D +L A+ DL+++Q+ V+ Sbjct: 215 DSNAEVDTNIIMNNKGQFIEIQCTGEERPFTRDEMDKILEYAEKGNRDLMRIQRRVLGE 273 >gi|16124407|ref|NP_418971.1| ribonuclease PH [Caulobacter crescentus CB15] gi|221233090|ref|YP_002515526.1| ribonuclease PH [Caulobacter crescentus NA1000] gi|239977592|sp|B8GXP2|RNPH_CAUCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|239977593|sp|P0CAW5|RNPH_CAUCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|13421265|gb|AAK22139.1| ribonuclease PH [Caulobacter crescentus CB15] gi|220962262|gb|ACL93618.1| ribonuclease PH [Caulobacter crescentus NA1000] Length = 238 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 128/240 (53%), Positives = 171/240 (71%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +Q+R ++L V++YAEGSCL+ FG T +L TAT+EE VP W+RN GW+T Sbjct: 1 MRPSERAPDQLRAVTLETGVNRYAEGSCLIGFGHTKVLVTATVEENVPGWMRNKGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL +++ D + + G VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALRLATKYLLD--EGVLKTDPILGQVAAVSCGVFNGVPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D+NFV+T G IVE+Q + E+ F++ F ++ LA+ I +L LQ+ I Sbjct: 179 EDSNAEADSNFVLTGVGDIVEIQATGEKRGFTRAEFESLYGLAEKGINELFALQRAAIGG 238 >gi|157149261|ref|YP_001456580.1| ribonuclease PH [Citrobacter koseri ATCC BAA-895] gi|166228276|sp|A8ARN1|RNPH_CITK8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157086466|gb|ABV16144.1| hypothetical protein CKO_05101 [Citrobacter koseri ATCC BAA-895] Length = 238 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + +N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238 >gi|328956949|ref|YP_004374335.1| ribonuclease PH [Carnobacterium sp. 17-4] gi|328673273|gb|AEB29319.1| ribonuclease PH [Carnobacterium sp. 17-4] Length = 454 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 114/243 (46%), Positives = 156/243 (64%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++ R +++ K+ EGS LV FGDT ++ AT+E +VP +++ GW+ Sbjct: 1 MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETRVPRFLKGMGSGWVH 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+I R+LRS +DL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSSIDLEALGERSITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL +Q + D +K +VAAIS G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFVALKLAIQTLLDSGEL--TESPIKENVAAISVGILKDGEAVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ +VD N VMT G VE+QG+ E +TFS + ML K I +LI++Q D Sbjct: 179 LEDSSAEVDMNLVMTSLGQFVEIQGTGEESTFSSEQLSVMLEFGKKGINELIQVQDDAFQ 238 Query: 240 NEV 242 + Sbjct: 239 QAL 241 >gi|172041146|ref|YP_001800860.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109] gi|171852450|emb|CAQ05426.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109] Length = 257 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 112/240 (46%), Positives = 161/240 (67%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R+I +TRR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 12 RADGRSVDQLRDIRITRRFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 71 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R+ RE++ G+ GR+ EI R++GRALR+ VDL+ LG I IDCDV+QA Sbjct: 72 EYAMLPSATHERMPRESMRGKVKGRTHEISRLVGRALRAAVDLTELGENTIAIDCDVLQA 131 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L ++++ + L+ VAA+S G++ G +DL Y E Sbjct: 132 DGGTRTAAITGAYVALADALAYLQE--QGVVPGKPLRAPVAAVSVGIIDGVACLDLPYEE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N VMT +G VE+QG+ E A F + ML+LA+ + LI+LQ+ ++ + Sbjct: 190 DSRADVDMNVVMTKAGRFVEIQGTGEAAEFDRAELNTMLDLAEGGLHQLIELQERALNTD 249 >gi|152976902|ref|YP_001376419.1| ribonuclease PH [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189043753|sp|A7GTG6|RNPH_BACCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|152025654|gb|ABS23424.1| ribonuclease PH [Bacillus cytotoxicus NVH 391-98] Length = 245 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ ++R + + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGREVRELRHVHIHTNYLKHPEGSVLIEVGDTKVICSATVEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R + IDCDVIQ Sbjct: 61 AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEVLGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S G+L ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVTKI--PVKDYLAATSVGILEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT GH VEVQG+ E ATFS+ +L+ A+ I LI+ QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGHFVEVQGTGEEATFSRAQLNELLDAAEHGILQLIEKQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|74316495|ref|YP_314235.1| RNAse PH [Thiobacillus denitrificans ATCC 25259] gi|74055990|gb|AAZ96430.1| ribonuclease PH [Thiobacillus denitrificans ATCC 25259] Length = 244 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 156/240 (65%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R + TRR +K+AEGS LV GDT +L TA++ +KVP + + GW+TA Sbjct: 7 RPSGRAPDALRALRFTRRFTKHAEGSVLVAMGDTQVLCTASVVDKVPPHKKGSGEGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+VVDL LG R + IDCDV+QA Sbjct: 67 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+I GA+VA+ D + + + L VAA+S G+ G P++DLDY E Sbjct: 127 DGGTRCASICGAYVAVADAVSWLVREGALVET--PLVDSVAAVSVGVYQGQPVLDLDYLE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D D N VMT SG IVEVQG+AE FS+ A+L+LA IA + Q + Sbjct: 185 DSACDTDMNVVMTGSGGIVEVQGTAEGVAFSRTTLEALLDLATAGIAQISAEQVRTLGQP 244 >gi|62182227|ref|YP_218644.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75479865|sp|Q57I99|RNPH_SALCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|62129860|gb|AAX67563.1| RNase PH [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716715|gb|EFZ08286.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 238 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 125/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + +N + +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238 >gi|293374133|ref|ZP_06620467.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909] gi|325837445|ref|ZP_08166427.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1] gi|292647236|gb|EFF65212.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909] gi|325490977|gb|EGC93275.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1] Length = 236 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 111/236 (47%), Positives = 151/236 (63%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ N++R + + EG+ L+ G+T ++ TAT+E K+P ++R GWIT Sbjct: 1 MRTNERKNNELRPVEFIPNYIMHPEGAVLISVGNTKVICTATIENKLPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+ VDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNTRNVRESARGKLSGRTMEIQRLIGRSLRAAVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG+ VA+ + + LK H+AAIS G+ G I+DLDY Sbjct: 121 ADGGTRTASITGSVVAMKLAFDKL--VAEGVLKESPLKEHLAAISVGIKDGEVILDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS+ +VD N +MT+SG VE+QG+ E AT+S ML++A I LI+ QK Sbjct: 179 EDSSAEVDMNVIMTESGQFVEIQGTGEEATYSHAELLQMLDVASQGIKQLIEAQKQ 234 >gi|224282438|ref|ZP_03645760.1| ribonuclease PH [Bifidobacterium bifidum NCIMB 41171] gi|311063782|ref|YP_003970507.1| ribonuclease PH Rph [Bifidobacterium bifidum PRL2010] gi|313139586|ref|ZP_07801779.1| RNase PH [Bifidobacterium bifidum NCIMB 41171] gi|310866101|gb|ADP35470.1| Rph Ribonuclease PH [Bifidobacterium bifidum PRL2010] gi|313132096|gb|EFR49713.1| RNase PH [Bifidobacterium bifidum NCIMB 41171] Length = 254 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 109/239 (45%), Positives = 155/239 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 14 IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG QI IDCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ E + +VLK V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++ +L+LA+ +L Q+ +S Sbjct: 194 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQRAALS 252 >gi|84501187|ref|ZP_00999392.1| ribonuclease PH [Oceanicola batsensis HTCC2597] gi|84390478|gb|EAQ02966.1| ribonuclease PH [Oceanicola batsensis HTCC2597] Length = 237 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 128/237 (54%), Positives = 174/237 (73%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ V+K+AEGSCL+K GDTH++ TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRDLSEMRAVSIETGVTKHAEGSCLIKVGDTHVICTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + + L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVV--TDPLVDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NFVMT SG ++EVQ SAE AT+S+D +++LA+ +++L + QK Sbjct: 179 EDSEAGVDGNFVMTGSGRLIEVQMSAEGATYSRDQMNQLVDLAEKGVSELAEKQKAA 235 >gi|227354797|ref|ZP_03839214.1| ribonuclease PH [Proteus mirabilis ATCC 29906] gi|227165115|gb|EEI49946.1| ribonuclease PH [Proteus mirabilis ATCC 29906] Length = 251 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ +Q+R I++TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 14 MRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ Sbjct: 74 AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L M + LK VAA+S G++ G P+ DL+Y Sbjct: 134 ADGGTRTASISGACVALVDALNKMVAEGKLKK--SPLKSMVAAVSVGIVDGQPLCDLEYV 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM D G ++EVQG+AE A FS + A+L LAK + + + QK+ + Sbjct: 192 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 251 >gi|83589383|ref|YP_429392.1| ribonuclease PH [Moorella thermoacetica ATCC 39073] gi|123524979|sp|Q2RL40|RNPH_MOOTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|83572297|gb|ABC18849.1| RNAse PH [Moorella thermoacetica ATCC 39073] Length = 250 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR ++R +++ R KYAEGS L+ GDT ++ +AT+EEKVP +++NT GWIT Sbjct: 2 LRANGRGLRELRPVTIERHYLKYAEGSALITVGDTRVICSATVEEKVPPFLKNTGKGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST R RE GR GR+QEIQR+IGR+LRSVVD+S LG R I +DCDV+Q Sbjct: 62 AEYSLLPRSTKERTIREVTRGRLTGRTQEIQRLIGRSLRSVVDMSLLGERTIWLDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VAL + L + + LK +AA+S G++ I+DLD+ Sbjct: 122 ADGGTRTAAITGSFVALAEALAGLVAAGGV--PAMPLKDFLAAVSVGLVDDELILDLDFQ 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT SG +VEVQG+AE F+++ AML+LA + I LI +QK V+ + Sbjct: 180 EDSHAGVDMNVVMTGSGQLVEVQGTAEGRPFTREQLTAMLDLAGEGIESLIAIQKQVLGD 239 >gi|52786716|ref|YP_092545.1| ribonuclease PH [Bacillus licheniformis ATCC 14580] gi|161760685|ref|YP_080129.2| ribonuclease PH [Bacillus licheniformis ATCC 14580] gi|319647246|ref|ZP_08001468.1| ribonuclease PH [Bacillus sp. BT1B_CT2] gi|81609007|sp|Q65GG2|RNPH_BACLD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|52349218|gb|AAU41852.1| Rph [Bacillus licheniformis ATCC 14580] gi|145903088|gb|AAU24491.2| ribonuclease PH [Bacillus licheniformis ATCC 14580] gi|317390593|gb|EFV71398.1| ribonuclease PH [Bacillus sp. BT1B_CT2] Length = 246 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 109/241 (45%), Positives = 154/241 (63%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ N++R +++ + EGS L+ G T ++ A++E++VP ++R GWIT Sbjct: 1 MRYDGRKNNELRPVTMDLDFITHPEGSVLITVGGTKVICNASVEDRVPPFLRGEGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179 ADGGTRTA+ITGA+ A+ + + + + +AA S G+ I+DL+Y Sbjct: 121 ADGGTRTASITGAFTAMALAVGRLVE--KGALKEMPITDFLAATSVGIDKEKGLILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT G VE+QG+ E ATFS+ +L LA+ IA+L++ QK+V+ Sbjct: 179 QEDSAAEVDMNVVMTGEGRFVELQGTGEEATFSRSELDGLLELAEKGIAELLEKQKEVLG 238 Query: 240 N 240 + Sbjct: 239 D 239 >gi|227488224|ref|ZP_03918540.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867] gi|227091794|gb|EEI27106.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867] Length = 237 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 103/238 (43%), Positives = 156/238 (65%), Gaps = 7/238 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++RE+ +TR + GS LV+FG T ++ TA+++E VP + +++ GW+TA Sbjct: 7 RADGRATDELREVKITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GR+QEI R++GR+LR+ +DL+ LG I +DCDV+QA Sbjct: 67 EYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L + L VAAIS G++ G+P +DL Y E Sbjct: 127 DGGTRTASITGAYVALADALAS-------IDKTDALLPPVAAISVGLIDGHPCLDLPYEE 179 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N +M ++G VE+QG+ E FS++ +L+L + +L++ QK+ ++ Sbjct: 180 DSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQKEALA 237 >gi|50843137|ref|YP_056364.1| ribonuclease PH [Propionibacterium acnes KPA171202] gi|50840739|gb|AAT83406.1| probable ribonuclease PH [Propionibacterium acnes KPA171202] Length = 254 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYKE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251 >gi|114564986|ref|YP_752500.1| ribonuclease PH [Shewanella frigidimarina NCIMB 400] gi|122298386|sp|Q07WF3|RNPH_SHEFN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|114336279|gb|ABI73661.1| RNAse PH [Shewanella frigidimarina NCIMB 400] Length = 237 Score = 331 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR + +AEGS LV+FGDT +L TA+ E VP +++ GW+T Sbjct: 1 MRPSNRTPAQTRPITITRSFTAHAEGSVLVEFGDTKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ LG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKLLGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L + LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGIIKANPLKFLIAAVSVGIYKGEAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + +L LAK+ I +++ +QK +S Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLVLAKNSIREIVDVQKAALS 237 >gi|289425019|ref|ZP_06426798.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187] gi|289154718|gb|EFD03404.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187] gi|313763384|gb|EFS34748.1| ribonuclease PH [Propionibacterium acnes HL013PA1] gi|313814692|gb|EFS52406.1| ribonuclease PH [Propionibacterium acnes HL059PA1] gi|313828238|gb|EFS65952.1| ribonuclease PH [Propionibacterium acnes HL063PA2] gi|314914538|gb|EFS78369.1| ribonuclease PH [Propionibacterium acnes HL005PA4] gi|314917606|gb|EFS81437.1| ribonuclease PH [Propionibacterium acnes HL050PA1] gi|314919638|gb|EFS83469.1| ribonuclease PH [Propionibacterium acnes HL050PA3] gi|314930289|gb|EFS94120.1| ribonuclease PH [Propionibacterium acnes HL067PA1] gi|314957645|gb|EFT01748.1| ribonuclease PH [Propionibacterium acnes HL002PA1] gi|314968972|gb|EFT13070.1| ribonuclease PH [Propionibacterium acnes HL037PA1] gi|315098009|gb|EFT69985.1| ribonuclease PH [Propionibacterium acnes HL059PA2] gi|315102645|gb|EFT74621.1| ribonuclease PH [Propionibacterium acnes HL046PA1] gi|315110460|gb|EFT82436.1| ribonuclease PH [Propionibacterium acnes HL030PA2] gi|327451224|gb|EGE97878.1| ribonuclease PH [Propionibacterium acnes HL087PA3] gi|327452581|gb|EGE99235.1| ribonuclease PH [Propionibacterium acnes HL083PA2] gi|328751977|gb|EGF65593.1| ribonuclease PH [Propionibacterium acnes HL025PA2] gi|328754779|gb|EGF68395.1| ribonuclease PH [Propionibacterium acnes HL087PA1] Length = 254 Score = 331 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251 >gi|257463721|ref|ZP_05628110.1| ribonuclease PH [Fusobacterium sp. D12] gi|317061266|ref|ZP_07925751.1| ribonuclease PH [Fusobacterium sp. D12] gi|313686942|gb|EFS23777.1| ribonuclease PH [Fusobacterium sp. D12] Length = 249 Score = 331 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 113/240 (47%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR+ENQ+REI +TR + +AEGS L++ G+T ++ TA++ EKVP +++NT GW+TA Sbjct: 3 RLDGRRENQLREIKITRDFNMHAEGSVLIESGNTKVICTASVSEKVPSFLKNTGKGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+TG R +REA G+ GR+ EIQR+IGRALRS VDL LG R I +DCDVIQA Sbjct: 63 EYCMIPRATGERTQREAAKGKLSGRTMEIQRLIGRALRSSVDLEKLGERTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG+++A+ + + + + VAA+S G ++DL+Y E Sbjct: 123 DGGTRTASITGSFIAMAIAVAKL--LKEEILTESPVLSRVAAVSVGKHENSILLDLNYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS+ +VD N + D G +EVQG+ E ATF + A+L++A+ I L++ QK+V+ + Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQKEVLGED 240 >gi|30248295|ref|NP_840365.1| 3' exoribonuclease [Nitrosomonas europaea ATCC 19718] gi|61216039|sp|Q82XJ4|RNPH_NITEU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|30138181|emb|CAD84187.1| 3' exoribonuclease family [Nitrosomonas europaea ATCC 19718] Length = 241 Score = 331 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R + R QMR + + R ++AEGS L+++G+T ++ TA++ EKVP +++ GW+TA Sbjct: 3 RCNNRAPAQMRPVRIIRHYVRHAEGSVLIEYGETRVICTASVIEKVPPFLKGAGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R++REA G+Q GR+ EIQR+IGRALRS++DL LG R I +DCDVIQA Sbjct: 63 EYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSILDLEKLGERTIQMDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL+D + ++ + + ++ HVAA+S G+L G P++DLDY E Sbjct: 123 DGGTRTASITGAFVALYDAIDYLR--AERMISQNPIRDHVAAVSVGILKGQPLLDLDYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D D N VMT S +VEVQG+AE+ FS+ MLN+A+ + +L +Q+ + Sbjct: 181 DSGCDTDLNVVMTGSLGLVEVQGTAEKVVFSRQELDVMLNMAQQGLQELFDVQRKALET 239 >gi|322418585|ref|YP_004197808.1| ribonuclease PH [Geobacter sp. M18] gi|320124972|gb|ADW12532.1| ribonuclease PH [Geobacter sp. M18] Length = 239 Score = 331 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 118/238 (49%), Positives = 163/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR + +RE+ +TR K+AEGS L++FGDT ++ AT+E KVP +++ GW+TA Sbjct: 3 RTNGRAADALREVKITRNYLKHAEGSVLIEFGDTKVICNATVETKVPSFLKGKGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVD+ LG R I+IDCDVIQA Sbjct: 63 EYCMLPRATHTRNQRESSKGKLSGRTHEIQRLIGRSLRAVVDMEKLGERSILIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D LQ + D L+ VAA+S G++ G P +DLDY E Sbjct: 123 DGGTRTASITGAYVALADALQSLVDNGEL--TRSPLREAVAAVSVGIVDGVPFLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS+ +VD NFVMT S VEVQG+AE F+ + AM + A + L ++Q++ + Sbjct: 181 DSSAEVDMNFVMTSSMRFVEVQGTAEAEPFTIEQMDAMRSHAILGLTRLFEIQQEALG 238 >gi|197286965|ref|YP_002152837.1| ribonuclease PH [Proteus mirabilis HI4320] gi|226736924|sp|B4F0W3|RNPH_PROMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|194684452|emb|CAR46192.1| ribonuclease PH [Proteus mirabilis HI4320] Length = 238 Score = 331 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ +Q+R I++TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L M + LK VAA+S G++ G P+ DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALNKMVTEGKLKK--SPLKSMVAAVSVGIVDGQPLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM D G ++EVQG+AE A FS + A+L LAK + + + QK+ + Sbjct: 179 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 238 >gi|269955862|ref|YP_003325651.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894] gi|269304543|gb|ACZ30093.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894] Length = 262 Score = 331 bits (850), Expect = 5e-89, Method: Composition-based stats. Identities = 113/240 (47%), Positives = 155/240 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TR AEGS LV+FG T +L A+ E VP W + + GW+TA Sbjct: 20 RADGRAPDELRAVKITRGWLDAAEGSVLVEFGGTRVLCAASFTEGVPRWKKGSGEGWVTA 79 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+++D+SALG I++DCDV+QA Sbjct: 80 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAIIDVSALGENTIVLDCDVLQA 139 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + +VL V+A+S G++ G P++DL Y E Sbjct: 140 DGGTRTAAITGAYVALADAVAWGRRHGHIKGGKEVLTDSVSAVSVGIVDGVPMLDLPYVE 199 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D N V+T SG VEVQG+AE F + A+L+LA A L +LQ+ ++ E Sbjct: 200 DVRAGTDMNVVVTGSGTFVEVQGTAEHGAFDRAELDALLDLAVAGNARLAELQRAALAEE 259 >gi|296100489|ref|YP_003610635.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054948|gb|ADF59686.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 238 Score = 331 bits (850), Expect = 5e-89, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLVAAGKL--KTNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQKAALEN 238 >gi|72119576|gb|AAZ61839.1| RNAse PH [Ralstonia eutropha JMP134] Length = 258 Score = 331 bits (850), Expect = 5e-89, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R ISLTR +++AEGS L FGDT +L TA++ KVP + + GW+T Sbjct: 20 MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGRA+RSV DL+ALG + +DCDV+Q Sbjct: 80 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA HD + M + + ++ VAA+S GM+ G P++DLDY Sbjct: 140 ADGGTRTAAITGAFVAAHDAISTM--LRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYA 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG VEVQG+AE A FS+ AM LA+D IA L++ Q+ + Sbjct: 198 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQALG 256 >gi|226326904|ref|ZP_03802422.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198] gi|225204741|gb|EEG87095.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198] Length = 251 Score = 331 bits (850), Expect = 5e-89, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ NQ+R I++TR +K+AEGS LV+FGDT +L AT+E+ VP +++ GW+T Sbjct: 14 MRPADRQANQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ Sbjct: 74 AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L M + + LK VAA+S G++ G P+ DL+Y Sbjct: 134 ADGGTRTASISGACVALVDALNKMVEEGKLKK--SPLKSMVAAVSVGIVDGEPLCDLEYV 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM D G ++EVQG+AE A FS + A+L LAK + + + QK+ + Sbjct: 192 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 251 >gi|499181|emb|CAA25357.1| unnamed protein product [Escherichia coli] Length = 238 Score = 331 bits (850), Expect = 5e-89, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD TRTA+ITGA VAL D LQ + + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADAWTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAALAN 238 >gi|119382767|ref|YP_913823.1| ribonuclease PH [Paracoccus denitrificans PD1222] gi|119372534|gb|ABL68127.1| RNAse PH [Paracoccus denitrificans PD1222] Length = 241 Score = 331 bits (850), Expect = 5e-89, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + MR IS+ + ++AEGSCL+ GDT +L +A++EEK P +++ + GW+T Sbjct: 2 MRPSGRNLSDMRPISIETGIMRHAEGSCLISCGDTRVLCSASIEEKAPPFLKGSGQGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGRALR+ VD ALG RQI++DCDVIQ Sbjct: 62 AEYGMLPRATNTRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRRALGERQIVVDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITG WVAL + + + + HVAA+SCG+ G PI+DLDY Sbjct: 122 ADGGTRCAAITGGWVALRLAMNKLLKAG--IVTADPIMDHVAAVSCGIYAGQPILDLDYA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D NF+MT +G ++EVQ SAE ATFS+ +L+LA+ IA+L++ Q + ++ Sbjct: 180 EDSEAGTDGNFIMTGAGRLIEVQMSAEGATFSRPEMNQLLDLAEAGIAELVRAQNEAVA 238 >gi|289549062|ref|YP_003474050.1| ribonuclease PH [Thermocrinis albus DSM 14484] gi|289182679|gb|ADC89923.1| ribonuclease PH [Thermocrinis albus DSM 14484] Length = 255 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 114/235 (48%), Positives = 157/235 (66%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ N++R+I +TR K+ EGS LV+FGDT ++ T +++E VP +++ GWIT Sbjct: 1 MRSDGRKPNELRKIRITRDYLKHPEGSVLVEFGDTKVVCTVSVQESVPPFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ +DL+ +G R IDCDV+Q Sbjct: 61 AEYSMLPRATQTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERTFWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + + +K VAA+S G++ ++DL++ Sbjct: 121 ADGGTRTAAITGAFVALADAVIKL--YTEGVLTTTPIKDFVAAVSVGIVDDQILLDLNFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS VD N V T SG I E+ E TFS++ MLNLA I L++LQ+ Sbjct: 179 EDSRAKVDMNVVATGSGMISEIHAMGEEHTFSREDMDKMLNLALAGIRQLVELQR 233 >gi|188532222|ref|YP_001906019.1| ribonuclease PH [Erwinia tasmaniensis Et1/99] gi|226736908|sp|B2VF76|RNPH_ERWT9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|188027264|emb|CAO95107.1| Ribonuclease PH (tRNA nucleotidyltransferase) [Erwinia tasmaniensis Et1/99] Length = 238 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L H+ + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNHLVSTGKL--KANPMKGMVAAISVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED+ + D N VMT+ G ++EVQG+AE FS + +L LA+ I L+ QK +++ Sbjct: 179 EDAAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTD 238 >gi|288553636|ref|YP_003425571.1| ribonuclease PH [Bacillus pseudofirmus OF4] gi|288544796|gb|ADC48679.1| ribonuclease PH [Bacillus pseudofirmus OF4] Length = 251 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 157/241 (65%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ N++R + L K+ EGS L+ GDT ++ TA++EE+VP ++R GWIT Sbjct: 1 MRSDGRQVNELRAVQLDTDYLKHPEGSVLISMGDTKVICTASIEERVPPFMRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGR+LR+++DL LG R I IDCDVIQ Sbjct: 61 AEYSMLPRATEQRTIRESSKGKVTGRTMEIQRLIGRSLRTILDLDQLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VAL + + S +K ++AA+S G+ + ++DL Y Sbjct: 121 ADGGTRTASITGAFVALSIAVNKAVE--RGLIKSWPIKDYLAAVSVGVEPTHGEVLDLCY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ +VD N +MT + VE+QG+ E ATFS++ +L+LA+ I +LI QK + Sbjct: 179 VEDAAAEVDMNVIMTGAHQFVELQGTGEEATFSREQLNQLLDLAEHGIDELISHQKAALG 238 Query: 240 N 240 Sbjct: 239 E 239 >gi|270265234|ref|ZP_06193496.1| ribonuclease PH [Serratia odorifera 4Rx13] gi|270040868|gb|EFA13970.1| ribonuclease PH [Serratia odorifera 4Rx13] Length = 238 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNALVAAGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS D A+L LA+ I + + QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIETIFQAQKAALAE 238 >gi|126724518|ref|ZP_01740361.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150] gi|126705682|gb|EBA04772.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150] Length = 235 Score = 331 bits (849), Expect = 6e-89, Method: Composition-based stats. Identities = 125/238 (52%), Positives = 171/238 (71%), Gaps = 3/238 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQMR++ + V+++AEGSCL+K GDTH+L TA+LE VP +++N+ GW+T Sbjct: 1 MRPSGRELNQMRDVVIETNVTRHAEGSCLIKMGDTHVLCTASLEPGVPRFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G Q GR+QEIQR+IGR+LR+ +D ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRACIDRVALGERQITIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + + H+AA+SCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALRLAVNRLMKAGEV--KTDPIMDHIAAVSCGIYAGQCVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D NFVMT + +VE+QGSAE ATFS+D F +++LA+ + +L+ QK + Sbjct: 178 EDSEAGTDGNFVMTGAKGMVELQGSAEGATFSRDQFNQLMDLAEKGVDELVAAQKAAV 235 >gi|269797499|ref|YP_003311399.1| ribonuclease PH [Veillonella parvula DSM 2008] gi|269094128|gb|ACZ24119.1| ribonuclease PH [Veillonella parvula DSM 2008] Length = 251 Score = 331 bits (849), Expect = 6e-89, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + KF + AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKF----PITDFCAAISVGIGPEGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N V T SG++VEVQG+ E TF++D A+L+LA+ +L+ Q++V+ + Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLGS 236 >gi|237728940|ref|ZP_04559421.1| ribonuclease PH [Citrobacter sp. 30_2] gi|283787723|ref|YP_003367588.1| ribonuclease PH [Citrobacter rodentium ICC168] gi|226909562|gb|EEH95480.1| ribonuclease PH [Citrobacter sp. 30_2] gi|282951177|emb|CBG90870.1| ribonuclease PH [Citrobacter rodentium ICC168] Length = 238 Score = 331 bits (849), Expect = 6e-89, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GWIT Sbjct: 1 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLVASGKL--KTNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238 >gi|254487308|ref|ZP_05100513.1| ribonuclease PH [Roseobacter sp. GAI101] gi|214044177|gb|EEB84815.1| ribonuclease PH [Roseobacter sp. GAI101] Length = 237 Score = 331 bits (849), Expect = 6e-89, Method: Composition-based stats. Identities = 122/237 (51%), Positives = 173/237 (72%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ ++MR +S+ +K+AEGS L+K G TH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRKLDEMRAVSVDTDFTKHAEGSALIKMGGTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA G+QGGR+ EIQR+IGRALR+ VD SALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG W+AL + + + + L VAAISCG+ G ++DLDY Sbjct: 121 ADGGTRCASITGGWIALKLAVNKLMKAGDVV--NDPLADPVAAISCGIYAGQSVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NF+MT +G ++E+Q SAE +T+S+D +++LA+ +++L+++QK V Sbjct: 179 EDSEAGVDGNFIMTGTGRLIEIQMSAEGSTYSRDQMNQLMDLAEKGVSELVEIQKAV 235 >gi|312139208|ref|YP_004006544.1| ribonuclease ph rpha [Rhodococcus equi 103S] gi|325673486|ref|ZP_08153177.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707] gi|311888547|emb|CBH47859.1| ribonuclease PH RphA [Rhodococcus equi 103S] gi|325555507|gb|EGD25178.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707] Length = 260 Score = 331 bits (849), Expect = 6e-89, Method: Composition-based stats. Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 1/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++RE+ +TR + + GS LV+FG+T ++ TA++EE VP W + + GW+TA Sbjct: 4 REDGRTDDELREVRITRGFTNHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G I IDCDV+QA Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLRAAGRLAD-PQPISCAIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L +Q+ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFAIQQAALAEP 242 >gi|111018437|ref|YP_701409.1| ribonuclease PH [Rhodococcus jostii RHA1] gi|110817967|gb|ABG93251.1| tRNA nucleotidyltransferase [Rhodococcus jostii RHA1] Length = 262 Score = 331 bits (849), Expect = 6e-89, Method: Composition-based stats. Identities = 105/238 (44%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++RE+ +TR + + GS LV+FG+T ++ TA++E+ VP W + + GW+TA Sbjct: 4 REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G I +DCDV+QA Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLRAAGRLAD-PQPISCGIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L ++QK + Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQKAALE 240 >gi|260576117|ref|ZP_05844110.1| ribonuclease PH [Rhodobacter sp. SW2] gi|259021597|gb|EEW24900.1| ribonuclease PH [Rhodobacter sp. SW2] Length = 237 Score = 331 bits (849), Expect = 6e-89, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 171/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +MR I + V K+AEGSCL+K G+TH+L +AT+E+K P +++NT GW+T Sbjct: 1 MRPSGRKLGEMRPIVIETGVMKHAEGSCLIKMGETHVLCSATIEDKAPPFLKNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATNSRNRREAAAGKQTGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + +S + HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAMNKLLKAG--VIVSDPMIDHVAAVSCGIYAGQPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D NF++T G ++EVQ SAE ATFS+ +L+LA+ ADL+ QK + Sbjct: 179 EDSAAGTDGNFILTGRGRLIEVQMSAEGATFSRAEMGELLDLAEAGAADLVAAQKAALG 237 >gi|314982113|gb|EFT26206.1| ribonuclease PH [Propionibacterium acnes HL110PA3] gi|315090352|gb|EFT62328.1| ribonuclease PH [Propionibacterium acnes HL110PA4] Length = 254 Score = 330 bits (848), Expect = 7e-89, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIECGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251 >gi|226360555|ref|YP_002778333.1| ribonuclease PH [Rhodococcus opacus B4] gi|226239040|dbj|BAH49388.1| ribonuclease PH [Rhodococcus opacus B4] Length = 262 Score = 330 bits (848), Expect = 7e-89, Method: Composition-based stats. Identities = 106/238 (44%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++RE+ +TR + + GS LV+FG+T ++ TA++E+ VP W + T GW+TA Sbjct: 4 REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGTGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G I +DCDV+QA Sbjct: 64 EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLRAAGRLAD-PQPISCGIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L ++QK + Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQKAALE 240 >gi|149204370|ref|ZP_01881337.1| ribonuclease PH [Roseovarius sp. TM1035] gi|149142255|gb|EDM30302.1| ribonuclease PH [Roseovarius sp. TM1035] Length = 238 Score = 330 bits (848), Expect = 7e-89, Method: Composition-based stats. Identities = 129/237 (54%), Positives = 174/237 (73%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ V K+AEGSCL+K GDTH+L TAT+EE+VP +++ + GW+T Sbjct: 1 MRPSGRNLSEMRSVSIETGVLKHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + S L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDVL--SDPLIDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NF+MT + ++EVQ SAE AT+S+D A+L+LA+ + L+ Q++ Sbjct: 179 EDSEAGVDGNFIMTGTKRLIEVQMSAEGATYSRDQMNALLDLAELGVDQLVAKQREA 235 >gi|88811938|ref|ZP_01127191.1| ribonuclease PH [Nitrococcus mobilis Nb-231] gi|88790822|gb|EAR21936.1| ribonuclease PH [Nitrococcus mobilis Nb-231] Length = 238 Score = 330 bits (848), Expect = 7e-89, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR + +TR +K+AEGS LV+FGDT +L A++EE+VP W+RN+ GWIT Sbjct: 1 MRPSGRHNHEMRAVRITRGFTKHAEGSALVEFGDTKILCNASVEERVPPWLRNSGRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R REAV GRQ GR+ EIQR+IGR+LR+ +DL ALG R+IIIDCDV+Q Sbjct: 61 AEYAMLPRATQSRNDREAVRGRQQGRTVEIQRLIGRSLRAAIDLQALGERRIIIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VAL D LQ + L GHVAA+S G+ G ++DLDY Sbjct: 121 ADGGTRTAAITGGYVALADALQSL--IKKGLLKRPPLFGHVAAVSVGIYRGKVVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D N VM + G ++E+QG+AE F + M++LA++ LI+ Q+ + Sbjct: 179 EDAEAETDMNIVMNEVGALIEIQGTAEGHAFRRVELGQMIDLAEEGTRSLIEAQRQALE 237 >gi|313894107|ref|ZP_07827673.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str. F0412] gi|313441671|gb|EFR60097.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str. F0412] Length = 251 Score = 330 bits (848), Expect = 7e-89, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 160/240 (66%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + KF + AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKF----PITDFCAAISVGIGPEGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N V T SG +VEVQG+ E TF++D A+L+LA+ +L+ Q++ + + Sbjct: 177 EDSAAIVDMNVVRTGSGDMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREALGS 236 >gi|327332417|gb|EGE74153.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1] Length = 280 Score = 330 bits (848), Expect = 7e-89, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 42 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 101 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 102 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 161 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 162 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 219 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 220 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 277 >gi|83945049|ref|ZP_00957415.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633] gi|83851831|gb|EAP89686.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633] Length = 238 Score = 330 bits (848), Expect = 7e-89, Method: Composition-based stats. Identities = 113/240 (47%), Positives = 161/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ + +R +S S YAEGSCL+ FG+T +L TA++E+ VP W+R GW+T Sbjct: 1 MRPEGRQPDALRPLSFEMGWSPYAEGSCLISFGNTKVLCTASVEDNVPPWLRGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+ VDL ALG RQI++DCDV+Q Sbjct: 61 GEYSMLPRATHQRTRREVQSGKPSGRTQEIQRLIGRSLRAAVDLKALGERQIVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAW+AL + ++ + + + +AA+S G++ G ++DL+Y Sbjct: 121 ADGGTRTAAITGAWLALKAAVAYLME--EDVLKADPVIAQIAAVSAGVVNGDCVLDLEYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + DANFV+T +G ++EVQ +AE A +Q+ F + LA+ ++DL Q + Sbjct: 179 EDRVAETDANFVLTSTGGVIEVQATAEDAPMTQEQFDQIFALARKGVSDLCAAQLKALGQ 238 >gi|303231308|ref|ZP_07318044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6] gi|302514038|gb|EFL56044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6] Length = 257 Score = 330 bits (848), Expect = 8e-89, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 161/240 (67%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+EE VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + KF + AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAIDFTFGGFGKF----PITDFCAAISVGIGPEGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N V T +G+++EVQG+ E TFS+D +L+LA+ +L+ +Q++V+ + Sbjct: 177 EDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRNVLGS 236 >gi|294679008|ref|YP_003579623.1| ribonuclease PH [Rhodobacter capsulatus SB 1003] gi|294477828|gb|ADE87216.1| ribonuclease PH [Rhodobacter capsulatus SB 1003] Length = 237 Score = 330 bits (848), Expect = 8e-89, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 172/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +R IS+ V+K+AEGS L+K GDTH+L TAT+E+K P +++ + GW+T Sbjct: 1 MRPSGRNLADIRSISIETGVTKHAEGSVLIKMGDTHVLCTATIEDKAPSFLKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ +D SALG RQI++DCDV+Q Sbjct: 61 AEYGMLPRATNSRNRREAAAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + +S + HVAAISCG+ G PI DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKSGLIVSDPIIDHVAAISCGIYAGQPIADLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF++T G +VEVQ +AE +TFS++ +L+LA+ +A L+ QK I+ Sbjct: 179 EDSEAGVDGNFILTGRGRLVEVQMTAEGSTFSREEMTKLLDLAEAGVAQLVAAQKAAIA 237 >gi|302037201|ref|YP_003797523.1| ribonuclease PH [Candidatus Nitrospira defluvii] gi|300605265|emb|CBK41598.1| Ribonuclease PH [Candidatus Nitrospira defluvii] Length = 247 Score = 330 bits (848), Expect = 8e-89, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 164/239 (68%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R + +TR +K+AEGS L++ GDT ++ TA++EEKVP +++ GW+TA Sbjct: 9 RIDGRRRDQIRPVKVTRNFTKHAEGSVLIEMGDTKVICTASIEEKVPPFLKGKGAGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R RE+V G+QGGR+ EIQR++GRALR+V+D LG R I IDCDVIQA Sbjct: 69 EYAMLPRATHDRSPRESVKGKQGGRTLEIQRLVGRALRAVIDTGRLGERTIWIDCDVIQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG+++AL D + + L ++AAIS G + G +VDL Y E Sbjct: 129 DGGTRTASITGSFIALADAVGVLRK--KDLIKVNPLTDYLAAISIGKVGGQVMVDLAYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N VMT +G VEVQG+AE+ F++ L+L I +L+ LQK +I + Sbjct: 187 DSHAEVDLNLVMTGAGQYVEVQGTAEKTPFNKKDMDEFLDLGWGAIRELVDLQKSLIGS 245 >gi|85374029|ref|YP_458091.1| ribonuclease PH [Erythrobacter litoralis HTCC2594] gi|122544511|sp|Q2NAJ7|RNPH_ERYLH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|84787112|gb|ABC63294.1| RNase PH [Erythrobacter litoralis HTCC2594] Length = 237 Score = 330 bits (848), Expect = 8e-89, Method: Composition-based stats. Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR I++ +K+AEGSCL+ FGDT +L TA++EE++P W+R GW+T Sbjct: 1 MRPSGRAPDEMRAITIETGYTKHAEGSCLIGFGDTKVLCTASVEERLPPWLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI +DCDVIQ Sbjct: 61 GEYSMLPRATHTRGNREAARGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GAW+AL + + + + G +AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGAWIALRLAVSGLMEQGQI--KDDPITGKIAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS D DANFV+ + G I E Q +AE AT+ ++ +L LA+ A + K Q + Sbjct: 179 EDSNADADANFVLIEGGKIAEAQATAEGATYDEEGLMRLLRLAQIGCAQIFKSQDEA 235 >gi|300859074|ref|YP_003784057.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41] gi|300686528|gb|ADK29450.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41] gi|302206777|gb|ADL11119.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231] gi|302331330|gb|ADL21524.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002] gi|308277022|gb|ADO26921.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19] Length = 247 Score = 330 bits (848), Expect = 8e-89, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 151/238 (63%), Gaps = 3/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA+ E VP + R++ GW+TA Sbjct: 11 RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE++ G+ GR+ EI R+IGR+LR+ VDLS LG I IDCDV+QA Sbjct: 71 EYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQA 130 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + H++ LK VAA+S G++ G +DL Y E Sbjct: 131 DGGTRTASITGAYVALADAISHLQK--QGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYEE 188 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS DVD N +M +G VE+QG+ E TF +D +L+ A+ +L+ QK + Sbjct: 189 DSRADVDMNVIM-QNGRFVEIQGTGEHNTFDRDELARILDFAEKGCTELVAAQKAALG 245 >gi|227542822|ref|ZP_03972871.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866] gi|227181448|gb|EEI62420.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866] Length = 237 Score = 330 bits (848), Expect = 9e-89, Method: Composition-based stats. Identities = 103/238 (43%), Positives = 156/238 (65%), Gaps = 7/238 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++RE+ +TR + GS LV+FG T ++ TA+++E VP + +++ GW+TA Sbjct: 7 RADGRATDELREVRITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GR+QEI R++GR+LR+ +DL+ LG I +DCDV+QA Sbjct: 67 EYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L + L VAAIS G++ G+P +DL Y E Sbjct: 127 DGGTRTASITGAYVALADALAS-------IDKTDALLPPVAAISVGLIDGHPCLDLPYEE 179 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N +M ++G VE+QG+ E FS++ +L+L + +L++ QK+ ++ Sbjct: 180 DSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQKEALA 237 >gi|282849100|ref|ZP_06258485.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745] gi|282580804|gb|EFB86202.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745] Length = 251 Score = 330 bits (848), Expect = 9e-89, Method: Composition-based stats. Identities = 123/239 (51%), Positives = 161/239 (67%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + KF + AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKF----PITNFCAAISVGIGPDGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N V T SG++VEVQG+ E TF++D A+L+LA+ +L+ Q++V+ Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLG 235 >gi|323705986|ref|ZP_08117556.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11] gi|323534600|gb|EGB24381.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11] Length = 259 Score = 330 bits (847), Expect = 9e-89, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I +TR ++YAEGS L++ G+T ++ TA++E+KVP + + T GWIT+ Sbjct: 3 RVDGRDSRSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+T R +RE+ G+Q GR+ EIQR+IGRALR+VVDL ALG + I IDCDVIQA Sbjct: 63 EYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG++VAL D + +++ +L +K VAA+S G++ ++DL Y E Sbjct: 123 DGGTRTASITGSFVALVDAMNKLKEKGAISKL--PIKSFVAAVSVGIVGNEKLLDLCYLE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VD N VMTD G +E+QG+ E FS+ F +L LA++ + +I++QK+ + + Sbjct: 181 DSNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKSDFSELLELAEEGLNKIIQVQKESLGD 239 >gi|163791539|ref|ZP_02185943.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7] gi|159873175|gb|EDP67275.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7] Length = 432 Score = 330 bits (847), Expect = 9e-89, Method: Composition-based stats. Identities = 114/243 (46%), Positives = 156/243 (64%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++ R +++ K+ EGS LV FGDT ++ AT+E KVP +++ GW+ Sbjct: 1 MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETKVPRFLKGMGSGWVH 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+I R+LRS +DL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSCIDLEALGERSITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL +Q + D +K +VAAIS G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFVALKLAIQTLLDSGELAL--SPIKENVAAISVGILEDGQAVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT G VE+QG+ E ATFS + +L K I +LI++Q + + Sbjct: 179 LEDSAANVDMNLVMTSGGQFVEIQGTGEEATFSSEQLAVLLEFGKKGIKELIQVQDNAFN 238 Query: 240 NEV 242 + Sbjct: 239 QAL 241 >gi|163732970|ref|ZP_02140414.1| ribonuclease PH [Roseobacter litoralis Och 149] gi|161393505|gb|EDQ17830.1| ribonuclease PH [Roseobacter litoralis Och 149] Length = 237 Score = 330 bits (847), Expect = 9e-89, Method: Composition-based stats. Identities = 121/237 (51%), Positives = 170/237 (71%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ N+MR +S+ +K+AEGS L+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRELNEMRAVSIETGFTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++RE+ +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG W+AL + + + S L VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWIALRLAVNKLMKAGDVI--SDPLVDPVAAISCGIYAGQPVMDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NF+MT + ++EVQ SAE +TFS+D +++LA+ + +L+ Q+ Sbjct: 179 EDSEAGVDGNFIMTGTKRLIEVQMSAEGSTFSRDQMNQLMDLAEKGVGELVTAQRAA 235 >gi|238020106|ref|ZP_04600532.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748] gi|237863630|gb|EEP64920.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748] Length = 251 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 161/240 (67%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+E+ VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + KF + AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKF----PITDFCAAISVGIGPEGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N V T SG++VEVQG+ E TF++D A+L+LA+ +L+ Q++V+ Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLGT 236 >gi|253583583|ref|ZP_04860781.1| ribonuclease PH [Fusobacterium varium ATCC 27725] gi|251834155|gb|EES62718.1| ribonuclease PH [Fusobacterium varium ATCC 27725] Length = 254 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 109/240 (45%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ + +REI +T+ + YAEGS L++FG+T ++ TA++ +KVP ++R GW+T Sbjct: 17 LREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASVSDKVPPFMRGQGKGWLT 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+TG R +RE+ G+ GR+ EIQR+IGRALR+ VDL LG R I IDCDVIQ Sbjct: 77 AEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLDKLGERTITIDCDVIQ 136 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +I+G ++AL ++ + ++ + +VAAIS G++ G P++DL Y Sbjct: 137 ADGGTRTTSISGGFIALALAVKKLMK--DRVLSVNPIVSNVAAISVGIVRGTPMLDLMYT 194 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N VM G VEVQG+ E AT+++ +++LA+ I ++I+LQ ++I Sbjct: 195 EDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNELIDLAEVGIKEIIRLQNEIIGE 254 >gi|291619462|ref|YP_003522204.1| Rph [Pantoea ananatis LMG 20103] gi|291154492|gb|ADD79076.1| Rph [Pantoea ananatis LMG 20103] gi|327395785|dbj|BAK13207.1| ribonuclease Rph [Pantoea ananatis AJ13355] Length = 238 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +Q+R ++LTR +K+AEGS LV+FG+T +L TAT++E VP +++ GW+T Sbjct: 1 MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKVLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLVASGKL--KANPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I +LI+ QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIEELIQAQKAALEK 238 >gi|146309763|ref|YP_001174837.1| ribonuclease PH [Enterobacter sp. 638] gi|166991085|sp|A4W506|RNPH_ENT38 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145316639|gb|ABP58786.1| RNAse PH [Enterobacter sp. 638] Length = 238 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 124/240 (51%), Positives = 161/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQ+R ++LTR +K+AEGS LV FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPSGRSANQVRPVTLTRNYTKHAEGSVLVAFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLIAAGKLKK--NPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N Sbjct: 179 EDSVAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQKAALQN 238 >gi|314967394|gb|EFT11493.1| ribonuclease PH [Propionibacterium acnes HL082PA2] gi|315093635|gb|EFT65611.1| ribonuclease PH [Propionibacterium acnes HL060PA1] gi|327325475|gb|EGE67279.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL103PA1] Length = 244 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 66 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 126 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 184 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 241 >gi|189425094|ref|YP_001952271.1| ribonuclease PH [Geobacter lovleyi SZ] gi|226736912|sp|B3E3D2|RNPH_GEOLS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189421353|gb|ACD95751.1| ribonuclease PH [Geobacter lovleyi SZ] Length = 238 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 117/235 (49%), Positives = 159/235 (67%), Gaps = 2/235 (0%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR + +R I++TR K+ EG+ LV+FGDT ++ TA++EE VP ++R GW+TAEY Sbjct: 5 GRGLSDLRPITMTRHFIKHPEGAVLVEFGDTRVICTASVEESVPPFLRGKGTGWVTAEYS 64 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T R REA G+Q GR+ EIQR+IGR+LR+V D++ LG R I +DCDVIQADGG Sbjct: 65 MLPRATHTRSSREAAKGKQSGRTLEIQRLIGRSLRAVTDMTKLGERTIYLDCDVIQADGG 124 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTA+ITGA+VAL D + + LK VAA+S G++ G ++DLDY EDS+ Sbjct: 125 TRTASITGAYVALVDAVSAL--LVQGKITGNPLKEAVAAVSVGIVDGQAVLDLDYQEDSS 182 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +VD NFVMT SG VEVQG+AE F+ + AM +LA I L Q++ ++ Sbjct: 183 AEVDMNFVMTSSGRFVEVQGTAEAEPFTLEQMDAMRSLAMTGINQLFTYQQEALA 237 >gi|251773010|gb|EES53566.1| ribonuclease PH [Leptospirillum ferrodiazotrophum] Length = 238 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +Q+R +S+ ++YAEGS L++ G TH+L T +LEEKVP ++++ GW+T Sbjct: 1 MRSDGRTSDQLRTLSIDPSPNRYAEGSALIRMGFTHVLATVSLEEKVPPFLKDQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSVV+ +G R IDCDVIQ Sbjct: 61 AEYGMLPRSTHERSPREAARGKQSGRTQEIQRLIGRSLRSVVNFEKMGVRTATIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+I GA+VAL +++ L ++AA+S G++ G P +DL Y Sbjct: 121 ADGGTRCASIGGAFVALALAFSNLKKVG--VIAESPLVDYLAAVSVGIVDGEPCLDLCYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD N VMT G +VEVQG+AE +FS+ +L+LA I++++ LQK ++ Sbjct: 179 EDSAADVDMNVVMTGKGELVEVQGTAEHRSFSRKEMDRLLDLAWKGISEIVDLQKRLV 236 >gi|157964776|ref|YP_001499600.1| ribonuclease PH [Rickettsia massiliae MTU5] gi|157844552|gb|ABV85053.1| Ribonuclease PH [Rickettsia massiliae MTU5] Length = 250 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 134/238 (56%), Positives = 169/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 12 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI Sbjct: 72 AEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVKKLGERQIIIDCDVIN 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G I+DLDY Sbjct: 132 ADGGTRTAAITGSYVALHLAIRSLMK--KRVLKVNPLISQIAAISCGIYKGEAILDLDYL 189 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD+NFV +G+++EVQG+AE+ FS+ F AML LAK A+L KLQ V+ Sbjct: 190 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEGQFLAMLKLAKGGAAELFKLQNQVL 247 >gi|95929460|ref|ZP_01312203.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684] gi|95134576|gb|EAT16232.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684] Length = 240 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 160/240 (66%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R RQ +Q+R ++ R ++YAEGS LV FGDT +L AT+EE VP ++R GW+T Sbjct: 3 IRADQRQPDQLRPVTFQRGYTRYAEGSVLVSFGDTVVLCNATVEESVPPFMRGEGRGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R REA G+ GGR+ EIQR+IGRALR+V+D ALG R I +DCDV+Q Sbjct: 63 AEYAMLPRATHSRNSREAARGKVGGRTHEIQRLIGRALRAVIDFDALGERTIRLDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL + + + + LK +AAIS G++ G P++DL+YG Sbjct: 123 ADGGTRTASITGAYVALAEAVNGL--LRDGVLTVSPLKDSLAAISVGIVDGQPLLDLNYG 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DVD N VMT SG VEVQG+AE F+ AM LA A+L +Q+ + Sbjct: 181 EDSKADVDMNIVMTGSGAFVEVQGTAEAEPFTAQQLDAMRALAMKGCAELAGMQRAALEG 240 >gi|332798597|ref|YP_004460096.1| Ribonuclease PH [Tepidanaerobacter sp. Re1] gi|332696332|gb|AEE90789.1| Ribonuclease PH [Tepidanaerobacter sp. Re1] Length = 238 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 171/239 (71%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R I++TR +KYAEGS L++ GDT ++ TAT++EKVP ++R GWITA Sbjct: 3 RVDGRANDEIRPITITRNFNKYAEGSVLIEAGDTKVVCTATVDEKVPPFLRGKGQGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE + R GR+ EIQR+IGRALRSVVDLSALG R I +DCDVIQA Sbjct: 63 EYSMLPRATEVRNIRETL--RPSGRTMEIQRLIGRALRSVVDLSALGERTIWLDCDVIQA 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA++AL D ++ ++D NK + +K +VAAIS G++ G ++DL + E Sbjct: 121 DGGTRTASITGAFIALGDAIRTLKD--NKEIETNPIKSYVAAISAGIVDGEKMLDLRFEE 178 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS VD N VMTD G IVE+QG+ E F++ +++LA I++L+ +QK ++ + Sbjct: 179 DSRAQVDMNLVMTDEGQIVEIQGTGEAFPFTRQDMNDLIDLAFKGISELVCIQKKLLLD 237 >gi|311277436|ref|YP_003939667.1| ribonuclease PH [Enterobacter cloacae SCF1] gi|308746631|gb|ADO46383.1| ribonuclease PH [Enterobacter cloacae SCF1] Length = 238 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +Q+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L ++ + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNNLVAAGKL--KTNPMKGMVAAVSVGIVDGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK + N Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALEN 238 >gi|134300519|ref|YP_001114015.1| ribonuclease PH [Desulfotomaculum reducens MI-1] gi|172044340|sp|A4J7Y7|RNPH_DESRM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|134053219|gb|ABO51190.1| RNAse PH [Desulfotomaculum reducens MI-1] Length = 245 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 169/239 (70%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR++ Q+R + +T +KYAEGS L++ GDT ++ TAT+EE+VP +++ GW+TA Sbjct: 3 RVDGRKQGQIRPVRMTPNYNKYAEGSVLIEVGDTRVICTATVEERVPPFLKGLGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+TG+R REA G+ GGR+ EIQR+IGRALRSVV+L ALG R + +DCDVIQA Sbjct: 63 EYSMLPRATGSRTIREAARGKLGGRTMEIQRLIGRALRSVVNLEALGERSLTMDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ L + + ++ + +AA S G++ G P++DL Y E Sbjct: 123 DGGTRTASITGAYVAMIFALNRLVEQGMLEKI--PVSDFIAATSVGIVKGRPVIDLCYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N VMT +G VE+QG+ E ATFS++ +L+LA I +L K+Q+ V+ + Sbjct: 181 DSVAEVDMNVVMTGTGRFVEIQGTGEEATFSREEMNQLLDLAAAGIEELNKVQRQVLGD 239 >gi|149184525|ref|ZP_01862843.1| RNase PH [Erythrobacter sp. SD-21] gi|148831845|gb|EDL50278.1| RNase PH [Erythrobacter sp. SD-21] Length = 238 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 118/237 (49%), Positives = 163/237 (68%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR I++ +K+AEGSCL+ FG+T +L TA++EE++P W+R GW+T Sbjct: 1 MRPSGRAPDEMRAITIETGYTKHAEGSCLISFGETKVLCTASVEERIPPWLRGRGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R +REA G+Q GR+QEIQR+IGR+LR+VVD LG RQI +DCDVIQ Sbjct: 61 GEYSMLPRATHTRGQREAAKGKQSGRTQEIQRLIGRSLRAVVDHKKLGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GAWVAL + + + + + VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGAWVALRLAVNELMKSGDLVE--DPITAKVAAVSCGIYKGTPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS D DANFV+ + G I E Q +AE A + ++ F +L LA+ AD+ + Q + Sbjct: 179 EDSNADADANFVLIEGGKIAEAQATAEGAPYDEEAFLRLLRLAQMGCADIFRAQDEA 235 >gi|313835876|gb|EFS73590.1| ribonuclease PH [Propionibacterium acnes HL037PA2] gi|314927124|gb|EFS90955.1| ribonuclease PH [Propionibacterium acnes HL044PA1] gi|314970767|gb|EFT14865.1| ribonuclease PH [Propionibacterium acnes HL037PA3] gi|328906032|gb|EGG25807.1| tRNA nucleotidyltransferase [Propionibacterium sp. P08] Length = 252 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 110/238 (46%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 14 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 73 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+V+D ALG II+DCDV+QA Sbjct: 74 EYEMLPRATNERSGRESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILDCDVLQA 133 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + + + G V AIS G++ G P++DL Y E Sbjct: 134 DGGTRTASITGAYVALVDAVNWLRKRGGLV--GEPITGSVQAISVGVVGGVPMLDLAYEE 191 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ SG VE+QG+AE A F++D +L+LA L + Q +V+ Sbjct: 192 DSRADTDMNVVMSGSGDFVEIQGTAEGAPFNRDLLNELLDLAAGGCVTLKQAQSEVLG 249 >gi|15606253|ref|NP_213631.1| RNase PH [Aquifex aeolicus VF5] gi|6094114|sp|O67069|RNPH_AQUAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|37928163|pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Aquifex Aeolicus gi|2983451|gb|AAC07032.1| RNase PH [Aquifex aeolicus VF5] Length = 255 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 115/236 (48%), Positives = 157/236 (66%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA+ D + + +K VAA+S G++ ++DL++ Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHK--EGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234 >gi|253575653|ref|ZP_04852989.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14] gi|251844991|gb|EES73003.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14] Length = 252 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 114/239 (47%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GRQ ++ R ++LT V+KYAEGS ++ GDT ++ TAT+EEKVPM+++ GW+T Sbjct: 1 MRSNGRQADERRAMNLTVNVNKYAEGSVYIEVGDTKVMCTATVEEKVPMFMKGQGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+I RALRSVVDL ALG R I IDCDV+Q Sbjct: 61 AEYSMLPRATQTRNQRESARGKLSGRTMEIQRLIARALRSVVDLQALGERSITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA+VAL + + + + +A++S G++ ++DL+Y Sbjct: 121 ADGGTRTTSITGAFVALALAMHKIAQKHALPKF--PITDFLASVSVGIVGEDTLLDLNYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT +G VEVQG+ E FS+ ML LA+ I ++I+ Q++ + Sbjct: 179 EDSKAKVDMNVVMTGNGQFVEVQGTGEENPFSRAELDHMLELAEKGIREMIEQQREALG 237 >gi|260599940|ref|YP_003212511.1| ribonuclease PH [Cronobacter turicensis z3032] gi|260219117|emb|CBA34472.1| Ribonuclease PH [Cronobacter turicensis z3032] Length = 240 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +++R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 3 MRPAGRSASEVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDVIQ Sbjct: 63 AEYGMLPRATHTRNAREAAKGKQGGRTLEIQRLIARALRAAVDLKALGEFTITLDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + LKG VAA+S G++ G + DL+Y Sbjct: 123 ADGGTRTASITGACVALADALNALVAAGKL--KTNPLKGMVAAVSVGIVNGEAVCDLEYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 181 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHEELLDLLALARGGIESIVASQKAALAN 240 >gi|320655608|gb|EFX23536.1| ribonuclease PH [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 236 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ--GWIT 58 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 59 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 118 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S G++ G + DL+Y Sbjct: 119 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 177 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 236 >gi|253701667|ref|YP_003022856.1| ribonuclease PH [Geobacter sp. M21] gi|251776517|gb|ACT19098.1| ribonuclease PH [Geobacter sp. M21] Length = 239 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 121/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N +RE+ +TR K+AEGS LV+FGDT ++ AT+E +VP +++ GW+T Sbjct: 2 IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I+IDCDVIQ Sbjct: 62 AEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D LQ++ + + L+ VAA+S G++ G P +DLDY Sbjct: 122 ADGGTRTASITGAYVALADALQNLVKAGDLEK--SPLREAVAAVSVGIVDGVPFLDLDYP 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST +VD NFVMT S VEVQG+AE F+ D AM + A ++ L ++Q++ + Sbjct: 180 EDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRSHAMLGLSRLFEIQQEAL 237 >gi|314956852|gb|EFT01006.1| ribonuclease PH [Propionibacterium acnes HL027PA1] Length = 254 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 76 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 194 DSRADTDVNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251 >gi|303229137|ref|ZP_07315938.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a] gi|302516150|gb|EFL58091.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a] Length = 257 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 162/240 (67%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R I +TR ++YAEGS L++ G T ++ TAT+EE VP W++ + GW+T Sbjct: 1 MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSSQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST RV REA G+Q GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + + KF + AAIS G+ PI DL Y Sbjct: 121 ADGGTRTASITGAFVALVDAIDYTFGGFGKF----PITDFCAAISVGIGPEGPITDLCYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N V T +G+++EVQG+ E TFS+D +L+LA+ +L+ +Q+DV+ + Sbjct: 177 EDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRDVLGS 236 >gi|61215895|sp|Q6A759|RNPH_PROAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase Length = 244 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R++ + R AEGS LV FG T +L A++ E VP W + + GW+TA Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GGR+ EI R++GR+LR+VVD ALG II+DCDV+QA Sbjct: 66 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + + +S+ + G V AIS G++ G P++DL Y E Sbjct: 126 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYKE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM+ +G VE+QG+AE F+++ +L+LA A L + Q + + Sbjct: 184 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 241 >gi|326330800|ref|ZP_08197101.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1] gi|325951330|gb|EGD43369.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1] Length = 235 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 114/239 (47%), Positives = 152/239 (63%), Gaps = 7/239 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R I +TR +A GS L++FG T +L A+ E VP W + + GW+TA Sbjct: 4 RADGRADDELRPIKITRNWLDHAAGSVLIEFGKTRVLCAASASEGVPRWRKGSGLGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+V G+ GGR+ EI R++GR+LR+V+D ALG I IDCDV+QA Sbjct: 64 EYAMLPASTHERSSRESVKGKIGGRTHEISRLVGRSLRAVIDYKALGENTINIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + +S+ L G VAAIS G++ G P +DL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVASLG-------VSKALTGSVAAISVGIIDGVPRLDLPYEE 176 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N VMT G VEVQG+AE F + A+L L + ADL KLQ+ ++ Sbjct: 177 DVRAETDMNIVMTGEGKFVEVQGTAEGVAFDRAELDALLALGEKGCADLTKLQEAALAG 235 >gi|197106932|ref|YP_002132309.1| ribonuclease PH [Phenylobacterium zucineum HLK1] gi|226736923|sp|B4RC87|RNPH_PHEZH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|196480352|gb|ACG79880.1| ribonuclease PH [Phenylobacterium zucineum HLK1] Length = 238 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 126/237 (53%), Positives = 168/237 (70%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R+ + +R ++L V++YAEGSCL FG T +L TA+LEE VP ++R GW+T Sbjct: 1 MRPSDRRPDLLRPVTLETGVNRYAEGSCLASFGHTKVLVTASLEEGVPPFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATHTRGRREAAQGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITVDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL +++ + + + VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALRLATRYLLE--EGVIATDPILDQVAAISCGVFSGTPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS + DANFV+T +G IVE+Q + E+ FS+ F A+ LA+ I +L +LQ+ Sbjct: 179 EDSNAEADANFVLTGAGDIVEIQATGEKRGFSEAEFEALFALARKGIGELCELQRAA 235 >gi|192362066|ref|YP_001980727.1| ribonuclease PH [Cellvibrio japonicus Ueda107] gi|226736897|sp|B3PGE8|RNPH_CELJU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|190688231|gb|ACE85909.1| ribonuclease PH [Cellvibrio japonicus Ueda107] Length = 239 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 120/226 (53%), Positives = 159/226 (70%), Gaps = 2/226 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +R I +TRR +K+AEGS L++FGDT ++ TA++ VP ++R GW+TA Sbjct: 3 RPSGRNPQALRPIRITRRYTKHAEGSVLIEFGDTKVICTASVVAGVPSFLRGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG R+ REA G+Q GR+ EIQR+IGR+LR+ +DL+ALG I +DCDVIQA Sbjct: 63 EYGMLPRSTGTRMDREAARGKQQGRTVEIQRLIGRSLRAAIDLNALGENTIHLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVAL D + ++ + LK +A++S G+ G P++DLDY E Sbjct: 123 DGGTRTASITGAWVALADAVAWLKAEGRV--TDEPLKRAIASVSVGIYQGVPVLDLDYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 DS D D N VM D G I+E+QG+AE F++ F AML+LAK I Sbjct: 181 DSAADTDMNVVMGDDGGIIEIQGTAEAEPFTEAEFAAMLSLAKQGI 226 >gi|261418318|ref|YP_003252000.1| ribonuclease PH [Geobacillus sp. Y412MC61] gi|319767722|ref|YP_004133223.1| ribonuclease PH [Geobacillus sp. Y412MC52] gi|261374775|gb|ACX77518.1| ribonuclease PH [Geobacillus sp. Y412MC61] gi|317112588|gb|ADU95080.1| ribonuclease PH [Geobacillus sp. Y412MC52] Length = 256 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 118/241 (48%), Positives = 154/241 (63%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT Sbjct: 1 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VAL L + + L ++ +AA S G+ + I+DLDY Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGKLEAL--PIRDFLAATSVGIDPEHGVILDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ + Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRCALG 238 Query: 240 N 240 Sbjct: 239 E 239 >gi|304320412|ref|YP_003854055.1| ribonuclease PH [Parvularcula bermudensis HTCC2503] gi|303299314|gb|ADM08913.1| ribonuclease PH [Parvularcula bermudensis HTCC2503] Length = 234 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 128/235 (54%), Positives = 166/235 (70%), Gaps = 3/235 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N+MR+++ V++YAEGSCLV+FG+TH+L TA+ EE VP W++N + GW+T Sbjct: 1 MRPSGRAFNEMRDVTFELGVNRYAEGSCLVRFGNTHVLCTASFEENVPPWLKNQRRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE G GR+QEIQR+IGR+LR+VVDL+ALG RQI +DCDV+Q Sbjct: 61 AEYSMLPRATHTRGRRERDKG-PSGRTQEIQRLIGRSLRAVVDLNALGERQIQVDCDVLQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL + S + L VAAISCG+ P+VDLDY Sbjct: 120 ADGGTRTASITGGYVALKQAIDW--ALSAGVLTTSPLTDSVAAISCGLYNRAPVVDLDYD 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDST DANFV T +G IVE+Q +AE F+ D F A+++LAK +L + QK Sbjct: 178 EDSTAQADANFVFTGTGGIVEIQATAEGDPFADDEFAALVSLAKAACQELSEKQK 232 >gi|329936575|ref|ZP_08286311.1| ribonuclease [Streptomyces griseoaurantiacus M045] gi|329304090|gb|EGG47972.1| ribonuclease [Streptomyces griseoaurantiacus M045] Length = 244 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 115/229 (50%), Positives = 148/229 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q+R +SL R SK+AEGS LV FGDT +L TA+ E VP W + + GW+TA Sbjct: 3 RIDGRAPEQLRPVSLARGWSKHAEGSVLVAFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + L V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRRPLTDTVSAVSVGIVGGAPLLDLCYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 D D D N V T G VEVQG+AE F + A+L+LA DL Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVAGCGDL 231 >gi|152967706|ref|YP_001363490.1| ribonuclease PH [Kineococcus radiotolerans SRS30216] gi|151362223|gb|ABS05226.1| ribonuclease PH [Kineococcus radiotolerans SRS30216] Length = 248 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 107/226 (47%), Positives = 144/226 (63%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TR +AEGS LV+FG T +L A+ E VP W + + GW+TA Sbjct: 10 RADGRAVDELRPVTITRNWLDHAEGSVLVEFGRTRVLCAASFTEGVPRWRKGSGQGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+VVD LG I++DCDV+QA Sbjct: 70 EYAMLPRATNTRGDRESVKGKIGGRTHEISRLIGRSLRAVVDTKQLGENTIVLDCDVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TGA+VAL D + Q L G V+AIS G++ G P++DL Y E Sbjct: 130 DGGTRTAAVTGAYVALADAISWARGQGIVKASRQPLTGSVSAISVGVVDGVPVLDLPYVE 189 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 D + D N V+T G VEVQG+AE F + A+L+LA Sbjct: 190 DVRAETDMNVVVTGDGRFVEVQGTAEGTPFDRAELDALLDLAVGGC 235 >gi|262201910|ref|YP_003273118.1| ribonuclease PH [Gordonia bronchialis DSM 43247] gi|262085257|gb|ACY21225.1| ribonuclease PH [Gordonia bronchialis DSM 43247] Length = 251 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 111/238 (46%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R IS TR + + GS LV+FG T ++ TA++ + VP W R + GW+TA Sbjct: 4 RADGRADDELRPISFTRGFTSHPAGSVLVEFGQTRVMCTASVNDGVPPWRRGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+ EI R++GR+LR+ +DL ALG I +DCDV+QA Sbjct: 64 EYAMLPAATHERSSRESVKGRVGGRTHEISRLVGRSLRACIDLGALGENTIALDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + K Q L +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTWLRAAG-KLSDPQPLSCAIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+ E ATF++ A+L++A L + Q++V++ Sbjct: 183 DSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDALLDVAAVGTEKLFEAQREVLA 240 >gi|240170903|ref|ZP_04749562.1| ribonuclease PH [Mycobacterium kansasii ATCC 12478] Length = 259 Score = 328 bits (843), Expect = 3e-88, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVVITRGFTENPAGSVLIEFGRTKVLCTASVTEGVPRWRKGSGVGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AAIS G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-AAAGKLSDPRPLSCAIAAISVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF + +L++A L Q++ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFAAQREALA 240 >gi|83950767|ref|ZP_00959500.1| ribonuclease PH [Roseovarius nubinhibens ISM] gi|83838666|gb|EAP77962.1| ribonuclease PH [Roseovarius nubinhibens ISM] Length = 238 Score = 328 bits (843), Expect = 3e-88, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 174/239 (72%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR +S+ V+K+AEGSC+++ GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRALDEMRPVSIETGVTKHAEGSCMIRVGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + S L V A+SCG+ G ++DLDY Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDV--TSDPLVDPVGAVSCGIYAGQLVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF+MT SG ++E Q SAE +TF++D +L+LA+ + +L +LQ+ ++ Sbjct: 179 EDSEAGVDGNFIMTASGRMIEAQMSAEGSTFTRDQMTGLLDLAEKGVQELAELQRAAMN 237 >gi|237736793|ref|ZP_04567274.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817] gi|229420655|gb|EEO35702.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817] Length = 255 Score = 328 bits (843), Expect = 3e-88, Method: Composition-based stats. Identities = 108/240 (45%), Positives = 160/240 (66%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +++R + T+ + YAEGS L++ G+T ++ TAT+ +KVP +++N GW+T Sbjct: 18 LREDGRDVDELRVLKATKDFNLYAEGSVLMECGNTKVICTATVSDKVPPFLKNQGKGWLT 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+TG R +RE+ G+ GR+ EIQR+IGRALR+ VDL LG R I IDCDVIQ Sbjct: 78 AEYSMIPRATGERNQRESAKGKLTGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQ 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITG ++AL ++ + + + +VAAIS G++ G P++DL Y Sbjct: 138 ADGGTRTTSITGGYIALALAMKKL--VAEGVLAENPIISNVAAISVGIVNGTPVLDLKYT 195 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N VM G VEVQG+ E AT+++ ML+LA+ + ++++LQ +I Sbjct: 196 EDSAAEVDMNVVMNGEGKFVEVQGTGEEATYTRKELNEMLDLAEKGLKEIMELQNRIIGE 255 >gi|220928777|ref|YP_002505686.1| ribonuclease PH [Clostridium cellulolyticum H10] gi|254808583|sp|B8I1A8|RNPH_CLOCE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|219999105|gb|ACL75706.1| ribonuclease PH [Clostridium cellulolyticum H10] Length = 240 Score = 328 bits (843), Expect = 3e-88, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 158/238 (66%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR Q+R + + R K+AEGS L++ GDT ++ TA++EE++P + +++ GW+T Sbjct: 2 LRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +R+ + GRS EIQR+IGR+LR++VDL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG++VAL D + + + G VAA S G++ G ++DL Y Sbjct: 122 ADGGTRTASITGSYVALVDACRTLVK--KGLISKMPVTGTVAATSVGIVNGEELLDLCYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD N + TD G +E+Q + E+++FS+ +LNLA+ I +LIK Q +V+ Sbjct: 180 EDSNAEVDMNVIKTDKGEFIEIQATGEKSSFSKKQLDQLLNLAESGIHELIKAQNEVL 237 >gi|261823588|ref|YP_003261694.1| ribonuclease PH [Pectobacterium wasabiae WPP163] gi|261607601|gb|ACX90087.1| ribonuclease PH [Pectobacterium wasabiae WPP163] Length = 238 Score = 328 bits (843), Expect = 3e-88, Method: Composition-based stats. Identities = 118/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNQMVAKGKLKK--NPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G +VEVQG+AE FS + +L LA+ I +++ QK +++ Sbjct: 179 EDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAALAD 238 >gi|315292912|gb|EFU52264.1| ribonuclease PH [Escherichia coli MS 153-1] Length = 214 Score = 328 bits (843), Expect = 3e-88, Method: Composition-based stats. Identities = 119/216 (55%), Positives = 154/216 (71%), Gaps = 2/216 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216 EDS + D N VMT+ G I+EVQG+AE F+ + Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214 >gi|161551792|ref|YP_148519.2| ribonuclease PH [Geobacillus kaustophilus HTA426] gi|61215778|sp|Q5KWI5|RNPH_GEOKA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase Length = 256 Score = 328 bits (843), Expect = 3e-88, Method: Composition-based stats. Identities = 118/241 (48%), Positives = 154/241 (63%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT Sbjct: 1 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ Sbjct: 61 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VAL L + + L ++ +AA S G+ + I+DLDY Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGRLEAL--PIRDFLAATSVGIDPEHGVILDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ + Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRRALG 238 Query: 240 N 240 Sbjct: 239 E 239 >gi|126172622|ref|YP_001048771.1| ribonuclease PH [Shewanella baltica OS155] gi|152998920|ref|YP_001364601.1| ribonuclease PH [Shewanella baltica OS185] gi|160873506|ref|YP_001552822.1| ribonuclease PH [Shewanella baltica OS195] gi|217971601|ref|YP_002356352.1| ribonuclease PH [Shewanella baltica OS223] gi|304411675|ref|ZP_07393287.1| ribonuclease PH [Shewanella baltica OS183] gi|307306273|ref|ZP_07586018.1| ribonuclease PH [Shewanella baltica BA175] gi|166228316|sp|A3CZI9|RNPH_SHEB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228317|sp|A6WI99|RNPH_SHEB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043774|sp|A9KXZ7|RNPH_SHEB9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808600|sp|B8E4I8|RNPH_SHEB2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|125995827|gb|ABN59902.1| RNAse PH [Shewanella baltica OS155] gi|151363538|gb|ABS06538.1| ribonuclease PH [Shewanella baltica OS185] gi|160859028|gb|ABX47562.1| ribonuclease PH [Shewanella baltica OS195] gi|217496736|gb|ACK44929.1| ribonuclease PH [Shewanella baltica OS223] gi|304349863|gb|EFM14269.1| ribonuclease PH [Shewanella baltica OS183] gi|306911146|gb|EFN41573.1| ribonuclease PH [Shewanella baltica BA175] gi|315265735|gb|ADT92588.1| ribonuclease PH [Shewanella baltica OS678] Length = 237 Score = 328 bits (843), Expect = 3e-88, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q R I++TR+ + +AEGS LV+FG+T +L TA+ E VP +++ GW+T Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+Q GR+QEIQR+IGRALR+ VD+ ALG I+IDCDVIQ Sbjct: 61 AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L S LK +AA+S G+ G I DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VMT++G I+E+QG+AE FS + +L LAK+ I +++ +QK ++ Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLALAKNSIREIVDVQKAALN 237 >gi|118462847|ref|YP_880792.1| ribonuclease PH [Mycobacterium avium 104] gi|166228290|sp|A0QD04|RNPH_MYCA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|118164134|gb|ABK65031.1| ribonuclease PH [Mycobacterium avium 104] Length = 259 Score = 328 bits (843), Expect = 3e-88, Method: Composition-based stats. Identities = 106/238 (44%), Positives = 155/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR +++ GS L++FG T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAFVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D+ +VD N V TD+G +VEVQG+ E ATF + +L+ A L Q++ + Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREALK 240 >gi|41408520|ref|NP_961356.1| ribonuclease PH [Mycobacterium avium subsp. paratuberculosis K-10] gi|254774377|ref|ZP_05215893.1| ribonuclease PH [Mycobacterium avium subsp. avium ATCC 25291] gi|61215988|sp|Q73X87|RNPH_MYCPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|41396876|gb|AAS04739.1| RphA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 259 Score = 328 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 106/238 (44%), Positives = 155/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR +++ GS L++FG T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAFVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D+ +VD N V TD+G +VEVQG+ E ATF + +L+ A L Q++ + Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREALK 240 >gi|15603741|ref|NP_246815.1| ribonuclease PH [Pasteurella multocida subsp. multocida str. Pm70] gi|21759412|sp|Q9CJW5|RNPH_PASMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|12722306|gb|AAK03960.1| Rph [Pasteurella multocida subsp. multocida str. Pm70] Length = 238 Score = 328 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R NQ R I +TR +K+AEGS LV+FGDT +L TAT+EE VP +++ GW+T Sbjct: 1 MRPNERANNQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + N +K VAAIS G++ G P+ DL+Y Sbjct: 121 ADGGTRTASITGACVALCDAIHGLVE--NGTLKVNPIKSLVAAISVGIVEGVPVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LAK+ + +Q+ ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKEGCQLIFDVQRQALAK 238 >gi|56964417|ref|YP_176148.1| ribonuclease PH [Bacillus clausii KSM-K16] gi|61215808|sp|Q5WEM3|RNPH_BACSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56910660|dbj|BAD65187.1| ribonuclease PH [Bacillus clausii KSM-K16] Length = 250 Score = 328 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 116/241 (48%), Positives = 156/241 (64%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR++NQ+RE+ + +K+AEGS L+ GDT ++ TA++E +VP ++R GW+ Sbjct: 1 MRQDGRKQNQLREVEIIPHFTKHAEGSVLISVGDTKVICTASIENRVPPFLRGQNKGWLA 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+TG R REA G+ GR+ EIQR+IGRALR+VVDL LG + I IDCDVIQ Sbjct: 61 AEYSMLPRATGQRTIREAAKGKLSGRTMEIQRLIGRALRAVVDLEKLGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VAL +Q + K + + +AAIS G+L + DL Y Sbjct: 121 ADGGTRTASITGAYVALVLAVQK--AFAEKTISAWPITDFLAAISVGILPEEGAVCDLCY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N V T SG VEVQGS E A +++ +L+LA + I LI +Q+ + Sbjct: 179 SEDSQAKVDMNIVQTGSGDFVEVQGSGEEAVYTRSELNELLDLAAEGIDQLIHIQRPFLG 238 Query: 240 N 240 Sbjct: 239 E 239 >gi|262277778|ref|ZP_06055571.1| ribonuclease PH [alpha proteobacterium HIMB114] gi|262224881|gb|EEY75340.1| ribonuclease PH [alpha proteobacterium HIMB114] Length = 237 Score = 328 bits (842), Expect = 4e-88, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 170/239 (71%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R ++R + + A+GSCL+KFG+TH++ TA+ E+KVP W++ + GW+T Sbjct: 1 MR-NNRSNTELRPVEIIPNYINNADGSCLIKFGNTHVICTASYEDKVPRWLKGSGKGWVT 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA +G+ GGR+ EIQR+IGR+LR+ +DLS LG I IDCDVIQ Sbjct: 60 AEYGMLPRSTNERMRREASAGKIGGRTSEIQRLIGRSLRASIDLSLLGENLITIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL+ C++ ++D K + +K HVAAISCG++ G +VDLDY Sbjct: 120 ADGGTRTASITGGFVALNQCVKILQD--KKLINTNPIKNHVAAISCGVVNGETLVDLDYK 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVDANFV+ + I+E+Q + E+ T S++ ML +K I LI+ QK+ +S Sbjct: 178 EDSGADVDANFVINEKNEIIELQLTGEQTTCSEEKLNEMLKYSKQSIQLLIQKQKEALS 236 >gi|116671127|ref|YP_832060.1| ribonuclease PH [Arthrobacter sp. FB24] gi|116611236|gb|ABK03960.1| RNAse PH [Arthrobacter sp. FB24] Length = 252 Score = 328 bits (842), Expect = 4e-88, Method: Composition-based stats. Identities = 115/240 (47%), Positives = 162/240 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R IS+TR SK AEGS L++FG+T +L TA+L E VP W++ GW+T Sbjct: 11 IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q Sbjct: 71 AEYAMLPRATNTRSARESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL + ++ + + +Q L +AA+S G++ G P++DL Y Sbjct: 131 ADGGTRTAAITGAYVALAEAIRFARENKIISKNAQPLIDTIAAVSVGIIDGVPMLDLPYV 190 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N V+T SG VEVQG+AE A F +D +L+LA L +Q++ ++ Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNQLLDLALLGTEQLAAIQRETLAE 250 >gi|238755573|ref|ZP_04616910.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473] gi|238706173|gb|EEP98553.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473] Length = 238 Score = 328 bits (842), Expect = 4e-88, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPAGRALEQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHSRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + +N S +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKL--VANGKLKSNPMKGLVAAVSVGIVKGKAMCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + Q+ V+ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIESIFQAQRAVLEQ 238 >gi|84494376|ref|ZP_00993495.1| ribonuclease PH [Janibacter sp. HTCC2649] gi|84383869|gb|EAP99749.1| ribonuclease PH [Janibacter sp. HTCC2649] Length = 254 Score = 328 bits (842), Expect = 4e-88, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 154/239 (64%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +REI +TR +AEGS L++FG T +L A+ E VP W++ GW+T+ Sbjct: 7 RHDGRAPEDLREIRITRNWLDHAEGSVLIEFGRTRVLCAASFTEGVPRWLKGKGTGWVTS 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R RE+ G+ GGR+ EI R+IGRALR+V+D ALG I++DCDV+QA Sbjct: 67 EYEMLPRSTNTRSDRESRKGKVGGRTHEISRLIGRALRAVIDTKALGENTIVVDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D ++ + +Q L +AA+S G++ G P++DLDY E Sbjct: 127 DGGTRTASITGAYVALVDAIEDARAKGLIAKNAQPLLDSIAAVSVGVVGGLPVLDLDYPE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAER--ATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DST D D N VMT SG VEVQG+AE A F +D +L+LA A L QK + Sbjct: 187 DSTADTDMNVVMTGSGRYVEVQGTAEGADAAFDRDRLNELLDLAAAGCATLTLEQKKSL 245 >gi|56381043|dbj|BAD76951.1| ribonuclease PH [Geobacillus kaustophilus HTA426] Length = 257 Score = 328 bits (842), Expect = 4e-88, Method: Composition-based stats. Identities = 118/241 (48%), Positives = 154/241 (63%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + + K+AEGS L++ GDT ++ TAT+EEKVP ++R GWIT Sbjct: 2 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVVDL LG R I IDCDVIQ Sbjct: 62 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VAL L + + L ++ +AA S G+ + I+DLDY Sbjct: 122 ADGGTRTASITGAYVALVLALAKLVEEGRLEAL--PIRDFLAATSVGIDPEHGVILDLDY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ VD N VMT +G VE+QG+ E A FS+ +L A+ I LI +Q+ + Sbjct: 180 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRRALG 239 Query: 240 N 240 Sbjct: 240 E 240 >gi|197117592|ref|YP_002138019.1| ribonuclease PH [Geobacter bemidjiensis Bem] gi|197086952|gb|ACH38223.1| ribonuclease PH [Geobacter bemidjiensis Bem] Length = 239 Score = 328 bits (842), Expect = 4e-88, Method: Composition-based stats. Identities = 121/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR N +RE+ +TR K+AEGS LV+FGDT ++ AT+E +VP +++ GW+T Sbjct: 2 IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R I+IDCDVIQ Sbjct: 62 AEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D LQ++ + + L+ VAA+S G++ G P +DLDY Sbjct: 122 ADGGTRTASITGAYVALADALQNLVNAGELEK--SPLREAVAAVSVGIVDGVPFLDLDYP 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDST +VD NFVMT S VEVQG+AE F+ D AM A ++ L ++Q++ + Sbjct: 180 EDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRRHAMLGLSRLFEIQQEAL 237 >gi|50955004|ref|YP_062292.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07] gi|61215900|sp|Q6AEK9|RNPH_LEIXX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|50951486|gb|AAT89187.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07] Length = 251 Score = 328 bits (842), Expect = 4e-88, Method: Composition-based stats. Identities = 112/239 (46%), Positives = 155/239 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R +++ R ++ AEGS LV FG T +L TA+ VP W+ GW+T Sbjct: 5 IRADGRTADQLRPVTIERAWNRKAEGSALVSFGGTRVLCTASFTNGVPRWMSGKGRGWVT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST +R+ RE+V GR GGR+ EI R+IGR+LR+VVD+ ALG I++DCDV+Q Sbjct: 65 AEYAMLPRSTNDRMDRESVKGRIGGRTHEISRLIGRSLRAVVDMKALGENTIVLDCDVLQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D L+ + Q + L V+A+S G++ G P++DL Y Sbjct: 125 ADGGTRTAAITGAYVALADALEWGREHRFIGQKAAPLLDSVSAVSVGIVDGSPMLDLAYT 184 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D N V+T G VEVQG+AE A F + +L+LA L+ +Q ++ Sbjct: 185 EDVRAETDMNVVVTGRGLFVEVQGTAEGAPFDRSELNGLLDLALAGTTALVAVQSAALA 243 >gi|227551340|ref|ZP_03981389.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330] gi|257887545|ref|ZP_05667198.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733] gi|257896040|ref|ZP_05675693.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12] gi|257898668|ref|ZP_05678321.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15] gi|293378788|ref|ZP_06624945.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1] gi|227179551|gb|EEI60523.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330] gi|257823599|gb|EEV50531.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733] gi|257832605|gb|EEV59026.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12] gi|257836580|gb|EEV61654.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15] gi|292642581|gb|EFF60734.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1] Length = 451 Score = 328 bits (842), Expect = 4e-88, Method: Composition-based stats. Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+V+DL LG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|294085187|ref|YP_003551947.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322] gi|292664762|gb|ADE39863.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322] Length = 245 Score = 328 bits (841), Expect = 4e-88, Method: Composition-based stats. Identities = 128/240 (53%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R I+L S +AEGSCLV+ G+TH+L TA+++E+VP ++RN+ GW+TA Sbjct: 3 RPSGRAYDALRSITLESGFSLHAEGSCLVRCGNTHVLCTASVDERVPSFLRNSGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+QGGR+ EIQR+IGR+LR+V DL ALG RQI IDCDVIQA Sbjct: 63 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRSLRAVTDLKALGERQIKIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVAL + + Q + +VAAISCG+ G ++DLDY E Sbjct: 123 DGGTRTASITGAWVALKIACEKL--LLAGAITRQPIIDNVAAISCGVYKGNSVLDLDYDE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS ++DANFVM+ G +VE+Q + E FS+D AML+LA+ A L LQ + + Sbjct: 181 DSNAEIDANFVMSADGGLVEIQATGEEKPFSRDVLNAMLDLAEAGGATLFALQDQAVQTD 240 >gi|304413132|ref|ZP_07394605.1| ribonuclease PH [Candidatus Regiella insecticola LSR1] gi|304283975|gb|EFL92368.1| ribonuclease PH [Candidatus Regiella insecticola LSR1] Length = 242 Score = 328 bits (841), Expect = 5e-88, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL+GR Q+R ++LTR +KYAEGS LV+FGDT +L TAT+EE +P +++ GWIT Sbjct: 1 MRLAGRAAEQVRPLTLTRHYTKYAEGSVLVEFGDTKVLCTATIEEGIPRFLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I IDCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLQQLGEHTITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GA VAL D L+ K ++G VAAIS G++ + DL+Y Sbjct: 121 ADGGTRTAAISGASVALADALEK--AVIKKKLKKNPMRGLVAAISVGIVKNEALGDLEYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D N VM + ++EVQG+AE FS + +L LA+ I + + QK ++ Sbjct: 179 EDANAETDMNVVMMEDYQMIEVQGTAEGKPFSHEQLLTLLALARGGIGTIFQAQKAALA 237 >gi|271963272|ref|YP_003337468.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021] gi|270506447|gb|ACZ84725.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021] Length = 238 Score = 328 bits (841), Expect = 5e-88, Method: Composition-based stats. Identities = 111/238 (46%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +++TR +AEGS LV+FG T +L A++++ VP W R + GW+TA Sbjct: 3 RADGRSPDQLRPVTITRGWLAHAEGSVLVEFGGTKVLCAASVQDSVPRWRRGSGQGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR+LR+ VD LG I+IDCDV+QA Sbjct: 63 EYAMLPRATNTRNDRESVRGKIGGRTHEISRLIGRSLRACVDYKTLGENSIVIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + M + K L V+A+S G++ P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWMRE--RKMCKGDPLIDSVSAVSVGVVGSTPLLDLCYTE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N VMT SG VEVQG+AE F + +L+L A+L +LQ++ ++ Sbjct: 181 DVAAETDMNVVMTGSGAFVEVQGTAEGKPFDRGALDELLDLGVAGCAELTRLQRETLA 238 >gi|117928891|ref|YP_873442.1| ribonuclease PH [Acidothermus cellulolyticus 11B] gi|117649354|gb|ABK53456.1| RNAse PH [Acidothermus cellulolyticus 11B] Length = 240 Score = 328 bits (841), Expect = 5e-88, Method: Composition-based stats. Identities = 110/240 (45%), Positives = 153/240 (63%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +++R + TR +AEGS LV+FG T +L A++ E VP W + T GW+T Sbjct: 2 LRVDGRAADELRPVRFTRGWLLHAEGSVLVEFGRTRVLCAASVLEGVPKWRKGTGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R RE+V GR GGR+QEI R++GR+LR+ V+ + LG + +DCDV+Q Sbjct: 62 GEYAMLPRATTTRTDRESVRGRLGGRTQEISRLVGRSLRACVEPARLGENTVHLDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA++AL D + M D + + S L VAA+S G++ G P++DL Y Sbjct: 122 ADGGTRTAAITGAYLALADACRWMRD--HGWVTSDPLVRSVAAVSVGIVDGVPVLDLCYD 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED D N VMT G VE+QG+AE +D A+L LA A L +LQ+ ++ Sbjct: 180 EDVRAGTDMNVVMTGDGDFVEIQGTAEGTPLRRDEVDALLELATRGCARLTELQRTALAE 239 >gi|50119101|ref|YP_048268.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043] gi|61215912|sp|Q6DAW2|RNPH_ERWCT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|49609627|emb|CAG73060.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043] Length = 238 Score = 328 bits (841), Expect = 5e-88, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M +N +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNQM--VANGKLKKNPMKGMVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G +VEVQG+AE FS + +L LA+ I +++ QK +++ Sbjct: 179 EDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAALAD 238 >gi|120405241|ref|YP_955070.1| ribonuclease PH [Mycobacterium vanbaalenii PYR-1] gi|166228297|sp|A1TD14|RNPH_MYCVP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|119958059|gb|ABM15064.1| RNAse PH [Mycobacterium vanbaalenii PYR-1] Length = 260 Score = 328 bits (841), Expect = 5e-88, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R +++TR + + GS LV+FG T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVTITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPAATHERSGRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-AAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYTE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF + ML+ A L ++Q+ + Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAALE 240 >gi|313672547|ref|YP_004050658.1| rnase ph [Calditerrivibrio nitroreducens DSM 19672] gi|312939303|gb|ADR18495.1| RNAse PH [Calditerrivibrio nitroreducens DSM 19672] Length = 238 Score = 328 bits (841), Expect = 6e-88, Method: Composition-based stats. Identities = 103/239 (43%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +Q+R+I + + +Y +GS L+++G+T ++ AT+ E VP +++ T GW+T Sbjct: 1 MRNDGRLNDQLRDIRVVKDYIRYPQGSVLIEYGETKVICNATISEGVPPFLKGTGTGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +EY MLP ST R +RE+ G+ GR+QEI R+IGR+LRS +DLS +G R I IDCDVIQ Sbjct: 61 SEYSMLPCSTHTRNQRESQKGKLTGRTQEISRLIGRSLRSAIDLSLIGERTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++AL+ Q + + ++ +K VAA+S G++ G ++DL+Y Sbjct: 121 ADGGTRTASITGGFLALYIACQKLSED---LKIGNPIKSFVAAVSLGIVNGEIMLDLNYE 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N + + I+E+QG++E+ TF +D M++L + I LI +QK V++ Sbjct: 178 EDSNAEADINLIANEKSEIIEIQGTSEKGTFDKDMLNKMIDLGLNGINQLIDIQKRVLN 236 >gi|114566005|ref|YP_753159.1| tRNA nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318883|sp|Q0AZR6|RNPH_SYNWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|114336940|gb|ABI67788.1| RNAse PH [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 239 Score = 328 bits (841), Expect = 6e-88, Method: Composition-based stats. Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R +QMR + + KY +GS L++ GDT ++ +A +EEKVP ++R GW+TA Sbjct: 3 RPQNRGNDQMRTVRIIPGFQKYPDGSVLIEAGDTRVMCSAMMEEKVPPFLRGKGSGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R +REA G+ GR+ EIQR+IGR+LR+VVD+ A+G R + IDCDV+QA Sbjct: 63 EYSLLPSSTETRTQREASKGKISGRTSEIQRLIGRSLRAVVDMPAMGERTLWIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG++VAL+ + ++ + +K VAAIS G++ G PI+DL+Y E Sbjct: 123 DGGTRTAAITGSFVALYLAFKKFKE--QGIIETIPVKDFVAAISVGIIDGTPILDLEYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS DVD N VMT +G +E+QG+AE FS+ +L LA I +LI LQK ++ Sbjct: 181 DSQADVDMNVVMTGNGDFIEIQGTAEGTVFSRAELDQLLELAGKGIQELIALQKTILG 238 >gi|293572585|ref|ZP_06683559.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980] gi|291607368|gb|EFF36716.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980] Length = 451 Score = 328 bits (841), Expect = 6e-88, Method: Composition-based stats. Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+V+DL LG R IIIDCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESNKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|293189253|ref|ZP_06607976.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309] gi|292821716|gb|EFF80652.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309] Length = 255 Score = 327 bits (840), Expect = 6e-88, Method: Composition-based stats. Identities = 112/242 (46%), Positives = 159/242 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R +S+TR S EGS L++FG+T +L A+ E VP W R++ GW+T Sbjct: 6 LRADGRTPSQLRPVSITRGWSGTGEGSILIEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R RE+V G+ GGR+QEI R+IGR+LR +VD+SALG I++DCDV++ Sbjct: 66 GEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + ++ ++VL ++AIS G++ G P++DL Y Sbjct: 126 ADGGTRTAAITGAYVALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYV 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N V T G +EVQG+AE A F++D +L+LA A L + QK + Sbjct: 186 EDVRAETDMNVVQTGDGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQKLALEA 245 Query: 241 EV 242 + Sbjct: 246 PL 247 >gi|294637890|ref|ZP_06716159.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685] gi|291088916|gb|EFE21477.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685] Length = 237 Score = 327 bits (840), Expect = 6e-88, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR Q+R + LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T Sbjct: 1 MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNALVASGKL--KASPLKGMVAAVSVGIVAGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L LAKD I +I+ QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKDGIGQIIQAQKAALA 237 >gi|311106536|ref|YP_003979389.1| ribonuclease PH [Achromobacter xylosoxidans A8] gi|310761225|gb|ADP16674.1| ribonuclease PH [Achromobacter xylosoxidans A8] Length = 244 Score = 327 bits (840), Expect = 6e-88, Method: Composition-based stats. Identities = 117/237 (49%), Positives = 161/237 (67%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +++R SL R ++YAEGS LVK G+TH+L TA++ EKVP +++ GW+TA Sbjct: 9 RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA Sbjct: 69 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVA + + + + ++ VAA+S G++ G ++DLDY E Sbjct: 129 DGGTRCASITGAWVAASEAIALLMKRGDLAV--NPIRDAVAAVSVGLVQGRAVLDLDYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N +MT G VEVQG+ E ATF++ ML LA+ IA L++ Q+ + Sbjct: 187 DSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDTMLVLAEGGIAGLVREQRAAL 243 >gi|307546985|ref|YP_003899464.1| ribonuclease PH [Halomonas elongata DSM 2581] gi|307219009|emb|CBV44279.1| ribonuclease PH [Halomonas elongata DSM 2581] Length = 245 Score = 327 bits (840), Expect = 6e-88, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q R+I LTR +++AEGS LV+FGDT +L A++E VP W+R K GW+TA Sbjct: 7 RPSGRATDQTRDIRLTRDYTRHAEGSVLVEFGDTRVLCNASVEAGVPRWLRGKKQGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ ++L LG I +DCDVIQA Sbjct: 67 EYGMLPRATHTRGGREASRGKQGGRTVEIQRLIGRSLRASINLKKLGEFTITVDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG VAL D +++++ K ++++S G+ G P+VDLDY E Sbjct: 127 DGGTRTAAITGGCVALVDAVRYLQR--EKLIKGDPFHQLISSVSVGIYQGTPVVDLDYPE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D N VM ++G ++EVQG+AE T+S+ AML+LA+ +L Q++ + Sbjct: 185 DSRAGTDMNVVMAENGELIEVQGTAESGTYSRAELNAMLDLAEKAGGELFDHQREALG 242 >gi|284799568|ref|ZP_05984302.2| tRNA nucleotidyltransferase [Neisseria subflava NJ9703] gi|284797404|gb|EFC52751.1| tRNA nucleotidyltransferase [Neisseria subflava NJ9703] Length = 277 Score = 327 bits (840), Expect = 6e-88, Method: Composition-based stats. Identities = 116/234 (49%), Positives = 168/234 (71%), Gaps = 2/234 (0%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEYG Sbjct: 43 GRAADSLRDIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 102 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGG Sbjct: 103 MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 162 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTA+ITGA+VAL + + SN ++ VAA+S G++ G P++DLDY EDS Sbjct: 163 TRTASITGAYVALQIAVDKL--LSNGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 220 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ Q+ + Sbjct: 221 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAAL 274 >gi|296170279|ref|ZP_06851870.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895002|gb|EFG74721.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 259 Score = 327 bits (840), Expect = 6e-88, Method: Composition-based stats. Identities = 105/238 (44%), Positives = 156/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR + + GS L++FG T ++ TA++ + VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTDGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAFVALADAVTYL-AAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D+ +VD N V TD+G +VEVQG+ E ATF + +L++A L Q++ ++ Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALA 240 >gi|293554040|ref|ZP_06674640.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039] gi|291601822|gb|EFF32074.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039] Length = 451 Score = 327 bits (840), Expect = 7e-88, Method: Composition-based stats. Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|238760457|ref|ZP_04621595.1| Ribonuclease PH [Yersinia aldovae ATCC 35236] gi|238783915|ref|ZP_04627932.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970] gi|238701352|gb|EEP93931.1| Ribonuclease PH [Yersinia aldovae ATCC 35236] gi|238715154|gb|EEQ07149.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970] Length = 238 Score = 327 bits (840), Expect = 7e-88, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 161/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAALAQ 238 >gi|229062175|ref|ZP_04199499.1| Ribonuclease PH [Bacillus cereus AH603] gi|228717158|gb|EEL68834.1| Ribonuclease PH [Bacillus cereus AH603] Length = 259 Score = 327 bits (840), Expect = 7e-88, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 159/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 15 MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 75 AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 134 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S + ++DL+Y Sbjct: 135 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGVVEEQGVVLDLNY 192 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ + Sbjct: 193 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 252 Query: 240 NEV 242 + V Sbjct: 253 DIV 255 >gi|255066782|ref|ZP_05318637.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256] gi|255048857|gb|EET44321.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256] Length = 241 Score = 327 bits (840), Expect = 7e-88, Method: Composition-based stats. Identities = 117/235 (49%), Positives = 168/235 (71%), Gaps = 2/235 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM Sbjct: 9 RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R++REA +G+Q GR+QEIQR+IGR+LR++VD+ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAIVDMEKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 129 RTASITGAFVALQIAVNKL--LSDDLISENPIREAVAAVSAGVVNGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D N VMT SG I+E+QG+AE A FS D F ++ LA+ IA+L Q+ +S+ Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLDEFGKLIALAQKGIAELTAHQQAALSS 241 >gi|220913058|ref|YP_002488367.1| ribonuclease PH [Arthrobacter chlorophenolicus A6] gi|219859936|gb|ACL40278.1| ribonuclease PH [Arthrobacter chlorophenolicus A6] Length = 252 Score = 327 bits (840), Expect = 7e-88, Method: Composition-based stats. Identities = 115/242 (47%), Positives = 162/242 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R IS+TR S AEGS L++FG+T +L TA+L VP W++ GW+T Sbjct: 11 VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q Sbjct: 71 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D ++ D + +Q L +AA+S G++ G P++DL Y Sbjct: 131 ADGGTRTAAITGAYVALADAIRFARDNKLIARNAQPLTDTIAAVSVGIIDGVPMLDLPYV 190 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N V+T SG VEVQG+AE A F +D +L+LA L +Q++ +++ Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNQLLDLALLGTTQLAAIQRETLAD 250 Query: 241 EV 242 + Sbjct: 251 TL 252 >gi|291456091|ref|ZP_06595481.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213] gi|291382500|gb|EFE90018.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213] Length = 258 Score = 327 bits (839), Expect = 8e-88, Method: Composition-based stats. Identities = 103/229 (44%), Positives = 151/229 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG QI +DCDV+Q Sbjct: 78 AEYAMLPRATSERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + E + +VLK +V+A+S G++ G P++DL Y Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHHHIKSADKVLKDYVSAVSVGVINGTPMLDLPYI 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS D N MT SG +E+QG+AE F++ +L+LA+ + Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKE 246 >gi|312880664|ref|ZP_07740464.1| RNAse PH [Aminomonas paucivorans DSM 12260] gi|310783955|gb|EFQ24353.1| RNAse PH [Aminomonas paucivorans DSM 12260] Length = 248 Score = 327 bits (839), Expect = 8e-88, Method: Composition-based stats. Identities = 120/237 (50%), Positives = 163/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + +R + L R ++YAEGS + FG T +L TAT+E+KVP ++R + GW++A Sbjct: 3 RIDGRSFDALRPLELERGCNRYAEGSARIAFGHTQVLCTATVEDKVPPFLRGSGKGWVSA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R R++ GR R QEIQR+IGR+LR+ VDL ALG R + IDCDVIQA Sbjct: 63 EYAMLPRATHQRTPRDSTRGRPNARGQEIQRLIGRSLRAAVDLEALGERTVWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D L+ + D + S L+ VAA+S G+L G P++DL Y E Sbjct: 123 DGGTRTASITGAFVALVDALRWIRDRNGL--PSLPLRHQVAAVSVGLLGGCPLLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS +VD N VM + G VE+QG+ E A FS+ F A+L+LA+ IA L +LQ+ + Sbjct: 181 DSGAEVDCNVVMAEDGRFVEIQGTGEDALFSRASFDALLDLARQGIAALHRLQRSTL 237 >gi|311743617|ref|ZP_07717423.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272] gi|311312747|gb|EFQ82658.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272] Length = 240 Score = 327 bits (839), Expect = 8e-88, Method: Composition-based stats. Identities = 115/238 (48%), Positives = 154/238 (64%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R+I +TR +A+GSCL++FG T +L A E VP W + + GW+TA Sbjct: 4 REDGRAVDQLRDIRITRGWLDHAQGSCLIEFGKTRVLCAAAASEGVPRWRKGSGLGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP++T +R RE+V GR GGR+ EI R++GR+LR+ +D ALG I IDCDV+QA Sbjct: 64 EYAMLPQATHDRSSRESVKGRIGGRTHEISRLVGRSLRATIDDKALGENTITIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA++AL D + H++ + L VAAIS G++ G P++DL Y E Sbjct: 124 DGGTRTAAITGAYIALADAVAHLKGLG--ATAGEPLVESVAAISVGIVDGVPMLDLPYVE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG VEVQG+AE F + A+L LA ADL +LQ + +S Sbjct: 182 DVRAHTDMNVVMTGSGAFVEVQGTAEGQPFDKAELDALLELAAGGCADLTRLQTEALS 239 >gi|67458795|ref|YP_246419.1| ribonuclease PH [Rickettsia felis URRWXCal2] gi|75535816|sp|Q4UJN4|RNPH_RICFE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|67004328|gb|AAY61254.1| Ribonuclease PH [Rickettsia felis URRWXCal2] Length = 239 Score = 327 bits (839), Expect = 8e-88, Method: Composition-based stats. Identities = 131/238 (55%), Positives = 169/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GW+T Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGR +R V+DL LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRNMRCVIDLKKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AA+SCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRILKVNPLISQIAAVSCGIYKGEAILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+ Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEKEPFSEEQFIAMLKLAKGGAAELFKLQNQVL 236 >gi|33151538|ref|NP_872891.1| ribonuclease PH [Haemophilus ducreyi 35000HP] gi|61216021|sp|Q7VP10|RNPH_HAEDU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|33147758|gb|AAP95280.1| ribonuclease PH [Haemophilus ducreyi 35000HP] Length = 238 Score = 327 bits (839), Expect = 8e-88, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ NQ+R + +TR ++YAEGS L++FG+T +L A++EE VP +++ + GW+T Sbjct: 1 MRPNHRENNQIRPVKITRHYTRYAEGSVLIEFGETKVLCNASIEESVPRFLKGQQQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+ EIQR+I RALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYGMLPRATHSRNQREAAKGKQSGRTMEIQRLIARALRAVVDLEALGERTITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D + + ++ + LKG VAAIS G++ + DL+Y Sbjct: 121 ADGGTRTAAITGACVALQDAIHKL--IADGVLKTNPLKGLVAAISVGIVENEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED+ + D N VM + G +VEVQG+AE FS +L+LA I L ++Q+ ++ Sbjct: 179 EDAKAETDMNVVMVEDGRLVEVQGTAEGKPFSHMELLQLLDLADQGINQLFEVQRQALAE 238 >gi|331695372|ref|YP_004331611.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190] gi|326950061|gb|AEA23758.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190] Length = 251 Score = 327 bits (839), Expect = 9e-88, Method: Composition-based stats. Identities = 115/238 (48%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR K+ GS LV+FGDT +L A++ + VP W + + GW+TA Sbjct: 3 RADGRADDELRPVRITRGFQKHPAGSVLVEFGDTKVLCAASVTDGVPRWRKGSGLGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I +DCDVIQA Sbjct: 63 EYAMLPSATNTRSDRESVRGRIGGRTHEISRLIGRSLRACIDLKALGENTIALDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + N+ + + VAA+S G++ G +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVTWL-AAHNRLADPKPISCQVAAVSVGVVDGRVRLDLPYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G ++EVQG+AE ATFS+ AML+ A IA L LQ + ++ Sbjct: 182 DSRAEVDTNVVATDTGTLIEVQGTAEGATFSRRTLDAMLDSALAGIATLATLQAEALA 239 >gi|269123373|ref|YP_003305950.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112] gi|268314699|gb|ACZ01073.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112] Length = 231 Score = 327 bits (839), Expect = 9e-88, Method: Composition-based stats. Identities = 106/233 (45%), Positives = 149/233 (63%), Gaps = 2/233 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ N++REI +TR KY EGS L++FG+T ++ T+EEKVP +++N GW+T Sbjct: 1 MRTNNRKNNELREIKITREYIKYPEGSVLIEFGNTKVICNVTVEEKVPPFLKNLGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R KREA G+ GR+ EIQR+IGR+LR+ +DL LG R +I+DCDVIQ Sbjct: 61 AEYSMLPRATNTRNKREASQGKLSGRTMEIQRLIGRSLRAALDLKKLGERTLIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++A+ + + + ++ VAAIS G + +DL++ Sbjct: 121 ADGGTRTASITGGYLAMEIAINKL--ILSGLLNENPIRAKVAAISVGKVNNELFLDLEFY 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS DVD N VM G +E+QG+ E TF++ + LA L KL Sbjct: 179 EDSHADVDMNIVMNSKGEFIEIQGTGEDTTFTKQELDKFIELASLGFEKLFKL 231 >gi|257878167|ref|ZP_05657820.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933] gi|257881049|ref|ZP_05660702.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502] gi|257889634|ref|ZP_05669287.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410] gi|257892426|ref|ZP_05672079.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408] gi|260559214|ref|ZP_05831400.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68] gi|261207747|ref|ZP_05922432.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6] gi|289565822|ref|ZP_06446264.1| ribonuclease PH [Enterococcus faecium D344SRF] gi|293563126|ref|ZP_06677591.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162] gi|294614004|ref|ZP_06693934.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636] gi|294617101|ref|ZP_06696767.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679] gi|294623312|ref|ZP_06702174.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317] gi|314939893|ref|ZP_07847099.1| ribonuclease PH [Enterococcus faecium TX0133a04] gi|314943740|ref|ZP_07850479.1| ribonuclease PH [Enterococcus faecium TX0133C] gi|314949696|ref|ZP_07853014.1| ribonuclease PH [Enterococcus faecium TX0082] gi|314953242|ref|ZP_07856181.1| ribonuclease PH [Enterococcus faecium TX0133A] gi|314993678|ref|ZP_07859026.1| ribonuclease PH [Enterococcus faecium TX0133B] gi|314997405|ref|ZP_07862356.1| ribonuclease PH [Enterococcus faecium TX0133a01] gi|257812395|gb|EEV41153.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933] gi|257816707|gb|EEV44035.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502] gi|257825994|gb|EEV52620.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410] gi|257828805|gb|EEV55412.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408] gi|260074971|gb|EEW63287.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68] gi|260078130|gb|EEW65836.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6] gi|289162365|gb|EFD10223.1| ribonuclease PH [Enterococcus faecium D344SRF] gi|291593111|gb|EFF24690.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636] gi|291596638|gb|EFF27865.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679] gi|291597280|gb|EFF28469.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317] gi|291604904|gb|EFF34373.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162] gi|313588540|gb|EFR67385.1| ribonuclease PH [Enterococcus faecium TX0133a01] gi|313591852|gb|EFR70697.1| ribonuclease PH [Enterococcus faecium TX0133B] gi|313594708|gb|EFR73553.1| ribonuclease PH [Enterococcus faecium TX0133A] gi|313597603|gb|EFR76448.1| ribonuclease PH [Enterococcus faecium TX0133C] gi|313640856|gb|EFS05436.1| ribonuclease PH [Enterococcus faecium TX0133a04] gi|313643954|gb|EFS08534.1| ribonuclease PH [Enterococcus faecium TX0082] Length = 451 Score = 327 bits (839), Expect = 9e-88, Method: Composition-based stats. Identities = 122/242 (50%), Positives = 162/242 (66%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIENSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|94968644|ref|YP_590692.1| ribonuclease PH [Candidatus Koribacter versatilis Ellin345] gi|94550694|gb|ABF40618.1| RNAse PH [Candidatus Koribacter versatilis Ellin345] Length = 245 Score = 327 bits (839), Expect = 9e-88, Method: Composition-based stats. Identities = 111/242 (45%), Positives = 156/242 (64%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R R +Q+R +S+ AEGSCL++ G+T ++ TA++EE VP ++RN+ GW+T Sbjct: 3 FRSDNRTPDQLRPVSIIPDYISTAEGSCLIEVGNTRVICTASIEESVPSFLRNSGKGWLT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +EY MLPR+T R RE GR GR+ EIQR+IGR+LR+V DL+ LG R + +DCDVIQ Sbjct: 63 SEYAMLPRATLTRTPREVSKGRASGRTHEIQRLIGRSLRAVTDLTKLGERTLFVDCDVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ +Q + + L+ +VAA S G++ G ++DL Y Sbjct: 123 ADGGTRTASITGAFVAVGLAVQKLTEAGTLSI--SPLRDYVAATSVGIVDGAVLLDLAYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N VMT S +VE+QG+AE+ F + M++LAK I LI QK + Sbjct: 181 EDSRAEVDMNIVMTGSRKMVEIQGTAEQHPFDDEQLAKMMSLAKAGIEQLIVKQKAALGT 240 Query: 241 EV 242 V Sbjct: 241 TV 242 >gi|119962182|ref|YP_948291.1| ribonuclease PH [Arthrobacter aurescens TC1] gi|119949041|gb|ABM07952.1| ribonuclease PH [Arthrobacter aurescens TC1] Length = 252 Score = 327 bits (839), Expect = 9e-88, Method: Composition-based stats. Identities = 115/240 (47%), Positives = 163/240 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R IS+TR SK AEGS L++FG+T +L TA+L E VP W++ GW+T Sbjct: 11 IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q Sbjct: 71 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL + ++ + + ++ L +AA+S G++ G P++DL Y Sbjct: 131 ADGGTRTAAITGAYVALAEAIRFARENKLIARNAEPLVDTIAAVSVGIIDGVPMLDLPYV 190 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N V+T SG VEVQG+AE A F +D A+L+LA L +Q++ ++ Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALLGTTQLSAIQRETLAE 250 >gi|238797068|ref|ZP_04640571.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969] gi|238719113|gb|EEQ10926.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969] Length = 238 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 161/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAALAE 238 >gi|37928170|pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph T125a Mutant From Aquifex Aeolicus Length = 255 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGG RTAAITGA+VA+ D + + +K VAA+S G++ ++DL++ Sbjct: 121 ADGGARTAAITGAFVAVADAIIKLHK--EGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234 >gi|69246345|ref|ZP_00603901.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO] gi|68195298|gb|EAN09749.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO] Length = 451 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|284008817|emb|CBA75581.1| ribonuclease PH [Arsenophonus nasoniae] Length = 237 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R+ +Q+R I +TR+ +K+AEGS L++FGDT +L AT++E VP +++ GWIT Sbjct: 1 MRPENREADQVRPIKITRQYTKHAEGSVLIEFGDTKVLCNATIDEGVPRFLKGQSQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNIREAAKGKQTGRTMEIQRLIARSLRAAVDLKQLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GA VAL D L M Q LK VAA+S G++ G PI DL+Y Sbjct: 121 ADGGTRTAAISGACVALTDALNKMVAEGKLKQ--SPLKSMVAAVSVGIVDGKPICDLEYS 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM D+G ++E+QG+AE FS + ++L+LAK+ + + QK+ + Sbjct: 179 EDSVAETDMNVVMMDNGKMIEIQGTAEGEPFSHEELLSLLSLAKNGLQTIFTAQKEALE 237 >gi|42524118|ref|NP_969498.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100] gi|61215946|sp|Q6MJR9|RNPH_BDEBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|39576326|emb|CAE80491.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100] Length = 243 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 159/240 (66%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +Q+R I +T VS+YAEGS +V+FG T +L TAT E K P W+ T GWIT Sbjct: 1 MRADGRLFDQLRNIKITPNVSEYAEGSAIVEFGRTKVLCTATYESKAPSWLLGTGAGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++R+ GGR+QEI R+IGR+LR+ VDL LG +QIIIDCDV+ Sbjct: 61 AEYGMLPRSTHTRIRRD--KSMTGGRTQEISRLIGRSLRAAVDLKQLGEKQIIIDCDVLN 118 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TG +VAL L+ + S + L +V+AIS G+ G ++DL+Y Sbjct: 119 ADGGTRTASVTGGFVALALALKKLHAVSEI--KTLPLINYVSAISVGLHEGQILLDLNYD 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS I D NFVMTD G VEVQG+AE F++D F M+++A+ +L Q V+ Sbjct: 177 EDSAIGTDMNFVMTDKGQFVEVQGTAEHVPFTRDQLFKMMDVAEKGCRELFIHQASVMGE 236 >gi|224499091|ref|ZP_03667440.1| ribonuclease PH [Listeria monocytogenes Finland 1988] Length = 248 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLDEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238 Query: 240 NEV 242 ++V Sbjct: 239 DKV 241 >gi|227328057|ref|ZP_03832081.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 238 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++ TR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNQMVAKGKLKK--NPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I +++ QK + Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAAL 236 >gi|253690467|ref|YP_003019657.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494124|sp|C6DIC7|RNPH_PECCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|251757045|gb|ACT15121.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 238 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 119/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R + LTR +K+AEGS LV+FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPTGRSAQQVRPLKLTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ +DL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L M +N +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNQM--VANGKLKKNPMKGMVAAVSVGIVNGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS + D N VMT+ G ++EVQG+AE FS + ++L LA+ I +++ QK + Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLSLLALARGGIETIVQAQKAAL 236 >gi|163942228|ref|YP_001647112.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4] gi|229013696|ref|ZP_04170825.1| Ribonuclease PH [Bacillus mycoides DSM 2048] gi|229135326|ref|ZP_04264120.1| Ribonuclease PH [Bacillus cereus BDRD-ST196] gi|229169222|ref|ZP_04296936.1| Ribonuclease PH [Bacillus cereus AH621] gi|226736888|sp|A9VIV4|RNPH_BACWK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|163864425|gb|ABY45484.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4] gi|228614288|gb|EEK71399.1| Ribonuclease PH [Bacillus cereus AH621] gi|228648149|gb|EEL04190.1| Ribonuclease PH [Bacillus cereus BDRD-ST196] gi|228747618|gb|EEL97492.1| Ribonuclease PH [Bacillus mycoides DSM 2048] Length = 245 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 159/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S + ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGVVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|229019707|ref|ZP_04176514.1| Ribonuclease PH [Bacillus cereus AH1273] gi|229027352|ref|ZP_04183607.1| Ribonuclease PH [Bacillus cereus AH1272] gi|228733960|gb|EEL84699.1| Ribonuclease PH [Bacillus cereus AH1272] gi|228741614|gb|EEL91807.1| Ribonuclease PH [Bacillus cereus AH1273] Length = 245 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 159/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR + ++R I + K+ EGS L++ GDT ++ +AT+EE+VP ++R GW+T Sbjct: 1 MRVDGRGQAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ Sbjct: 61 AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179 ADGGTRTA+ITGA+VA+ + + ++ +K ++AA S + ++DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQADKVSKI--PVKDYLAATSVGVVEEQGVVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N +MT G VEVQG+ E ATFS+ +L+ A+ I L++ QK+ + Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 238 Query: 240 NEV 242 + V Sbjct: 239 DIV 241 >gi|322835049|ref|YP_004215076.1| ribonuclease PH [Rahnella sp. Y9602] gi|321170250|gb|ADW75949.1| ribonuclease PH [Rahnella sp. Y9602] Length = 238 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 160/240 (66%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPAGRNAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNALVAAGKL--KANPMKGMVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I + + QK ++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLGLLALARGGIDTIFQAQKAALAE 238 >gi|291299064|ref|YP_003510342.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728] gi|290568284|gb|ADD41249.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728] Length = 241 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 115/237 (48%), Positives = 153/237 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R + +R + R +K+ EGS LV+FGDT +L TA+++ VP W R + GW+TA Sbjct: 3 RPDNRAPDALRPVKFQRGWTKHPEGSVLVEFGDTRVLCTASVDTGVPRWRRGSGSGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R REAV G+ GGR+ EI R+IGRALRS +DL ALG I IDCDV+QA Sbjct: 63 EYSMLPRATNTRGDREAVKGKIGGRTHEISRLIGRALRSCLDLKALGENTITIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG++VAL D + + D + ++L VAA+S G++ G P++DL+Y E Sbjct: 123 DGGTRTAAITGSYVALQDAVTWLTDKKMARKPDKILTRSVAAVSVGVVGGTPVLDLNYVE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS+ DVD N V T G VEVQG+ E A F + A+L+LA +L Q + Sbjct: 183 DSSADVDMNVVCTGDGDFVEVQGTGEEAVFDRSTLDALLDLATKGCKELTGAQVRAL 239 >gi|268593302|ref|ZP_06127523.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131] gi|291310999|gb|EFE51452.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131] Length = 237 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + RQ +QMR I++TR +K+AEGS L++FGDT +L AT+EE VP +++ GW+T Sbjct: 1 MRPADRQADQMRPITITRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNQREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GA VAL D L +M + + LK VAA+S G++ + DL+Y Sbjct: 121 ADGGTRTAAISGACVALVDALNNMVEQGKIAK--SPLKSMVAAVSVGIVNQEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM D G ++EVQG+AE FS + A+L LAK + + + Q++ + Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLALLALAKTGLNTIFEAQREALK 237 >gi|225075090|ref|ZP_03718289.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens NRL30031/H210] gi|224953574|gb|EEG34783.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens NRL30031/H210] Length = 277 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR + +R I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEYG Sbjct: 43 GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 102 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGG Sbjct: 103 MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 162 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 163 TRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 220 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ Q+ + Sbjct: 221 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAAL 274 >gi|304399022|ref|ZP_07380891.1| ribonuclease PH [Pantoea sp. aB] gi|308188661|ref|YP_003932792.1| ribonuclease PH [Pantoea vagans C9-1] gi|304353482|gb|EFM17860.1| ribonuclease PH [Pantoea sp. aB] gi|308059171|gb|ADO11343.1| ribonuclease PH [Pantoea vagans C9-1] Length = 238 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FG+T +L TA+++E VP +++ GW+T Sbjct: 1 MRPAGRSAQQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTASVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKALGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAAIS G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKLVASGKL--KANPMKGMVAAISVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I +LI+ QK + N Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIEELIQAQKAALEN 238 >gi|327439325|dbj|BAK15690.1| RNase PH [Solibacillus silvestris StLB046] Length = 250 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 110/240 (45%), Positives = 158/240 (65%), Gaps = 3/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R N++R + + + EGS L+ G+T ++ TAT+EEKVP ++R GWITA Sbjct: 3 RHDLRAVNELRPVQIDNNYLMHPEGSVLITVGNTKVICTATIEEKVPGFLRGQGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+ +G+ GR+ EIQR+IGRALR+VVDL ALG + + IDCDVIQA Sbjct: 63 EYSMLPRATEQRTRRESSAGKVSGRTMEIQRLIGRALRAVVDLEALGEKTVWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYG 180 DGGTRTA+ITGA+VA+ + + +K ++ + ++AA S G L ++DL+Y Sbjct: 123 DGGTRTASITGAFVAMTQAIAKLG--VDKPFVNFPVTDYLAATSVGKLENIGAVLDLNYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N +MT +G VE+QG+ E ATFS+ +L+L + IA LI++QK + + Sbjct: 181 EDSAAQVDMNVIMTGAGEFVELQGTGEEATFSRSELNELLDLGEAGIAQLIEMQKTALGD 240 >gi|37928172|pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph R126a Mutant From Aquifex Aeolicus Length = 255 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGT TAAITGA+VA+ D + + +K VAA+S G++ ++DL++ Sbjct: 121 ADGGTATAAITGAFVAVADAIIKLHK--EGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234 >gi|239948344|ref|ZP_04700097.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis] gi|239922620|gb|EER22644.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis] Length = 239 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KRE G+QGGR+QEIQR+IGRA+R V+DL LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKRETALGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLVIRSLMK--KRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD+NFV +G+++EVQG+AE+ FS++ F AML LAK +A+L KLQ V+ Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGVAELFKLQNQVL 236 >gi|256375162|ref|YP_003098822.1| ribonuclease PH [Actinosynnema mirum DSM 43827] gi|255919465|gb|ACU34976.1| ribonuclease PH [Actinosynnema mirum DSM 43827] Length = 254 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 1/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR ++ +R+I +TR ++ GS L++FG+T +L A++ E VP W + GW+T Sbjct: 2 LRTDGRNDDVLRDIRITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRSGSGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T R RE++ GR GGR+ EI R+IGR+LR+ +DL+ALG I+IDCDVIQ Sbjct: 62 AEYAMLPSATHTRGDRESIKGRVGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + + Q L ++A+S G++ G +DL Y Sbjct: 122 ADGGTRTAAITGAYVALADAVTWL-GAAGRLADPQPLSCAISAVSVGVVDGRVRLDLPYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N V TD+G +VEVQG+ E ATF++ ML+LA A+L +LQ + ++ Sbjct: 181 EDSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDRMLDLALQGCAELNRLQTEALAQ 240 Query: 241 E 241 Sbjct: 241 P 241 >gi|34581401|ref|ZP_00142881.1| ribonuclease PH [Rickettsia sibirica 246] gi|28262786|gb|EAA26290.1| ribonuclease PH [Rickettsia sibirica 246] Length = 239 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKREATLGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+ Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236 >gi|254828598|ref|ZP_05233285.1| ribonuclease PH [Listeria monocytogenes FSL N3-165] gi|254830008|ref|ZP_05234663.1| ribonuclease PH [Listeria monocytogenes 10403S] gi|255025220|ref|ZP_05297206.1| ribonuclease PH [Listeria monocytogenes FSL J2-003] gi|258600996|gb|EEW14321.1| ribonuclease PH [Listeria monocytogenes FSL N3-165] Length = 248 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238 Query: 240 NEV 242 ++V Sbjct: 239 DKV 241 >gi|299144136|ref|ZP_07037216.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518621|gb|EFI42360.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 438 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 100/241 (41%), Positives = 151/241 (62%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R+ ++MR I L + +GS L+K G+T ++ TA +E+KVP +++ GW++ Sbjct: 1 MR-DNRKFDEMRNIELELNYTSAPDGSVLIKCGNTKVICTAMIEDKVPFFLKGKNSGWLS 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLP ST R R+ G+ GRSQEIQR+IGR+LRS VDLS +G + I IDCDVI Sbjct: 60 CEYSMLPGSTSVRKVRDISRGKLDGRSQEIQRLIGRSLRSCVDLSKIGEKTIWIDCDVIS 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +I G+++AL ++ L +K VAAIS G++ ++DL+Y Sbjct: 120 ADGGTRTTSINGSFIALSLAVK--NAIRQGIILENPIKNKVAAISVGIVENEKLLDLNYD 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VM D+ I+E+QG+AE +FS+ +++L++ I ++ +Q V+ + Sbjct: 178 EDSNAQVDLNVVMNDNKEIIEIQGTAEGRSFSRKELNELIDLSEIAIDNIFNIQNKVLLD 237 Query: 241 E 241 + Sbjct: 238 K 238 >gi|160877892|pdb|3B4T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 gi|160877893|pdb|3B4T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 gi|160877894|pdb|3B4T|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 gi|160877895|pdb|3B4T|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 gi|160877896|pdb|3B4T|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 gi|160877897|pdb|3B4T|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph, The Mycobacterium Tuberculosis Structural Genomics Consortium Target Rv1340 Length = 262 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA Sbjct: 7 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 67 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 127 DGGTRTAAITGAYVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++ Sbjct: 186 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 243 >gi|171910497|ref|ZP_02925967.1| ribonuclease PH [Verrucomicrobium spinosum DSM 4136] Length = 269 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 117/243 (48%), Positives = 154/243 (63%), Gaps = 4/243 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59 R R +Q+R +S ++ +A GS LV FG+T ++ AT++E+VP W++ GW+ Sbjct: 3 RSDQRTPDQLRNVSFQLDIAPHATGSVLVSFGNTKVICAATIQEEVPRWMKAQGVSGGWL 62 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP ST +R R+ G+ GRSQEIQR+IGR+LR+VVDL LG R + IDCDV+ Sbjct: 63 TAEYSMLPYSTLDRKDRDISKGKLDGRSQEIQRLIGRSLRAVVDLEKLGPRTLWIDCDVL 122 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA+ITGA VA + + Q LK VAAIS G+ ++DL Y Sbjct: 123 QADGGTRTASITGACVASAIAFNRLLE--KGVLRQQPLKKKVAAISVGIFRNQALLDLCY 180 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED DVD N VMT+ G VE+QGS E +TFS+ AML L K I +L KLQ +VI+ Sbjct: 181 EEDRDADVDCNLVMTEDGQFVEIQGSGEESTFSEAQLSAMLTLGKKGIVELCKLQAEVIN 240 Query: 240 NEV 242 + V Sbjct: 241 SAV 243 >gi|37928168|pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph R86a Mutant From Aquifex Aeolicus Length = 255 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 2/236 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GG + EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGATHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VA+ D + + +K VAA+S G++ ++DL++ Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHK--EGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234 >gi|317494714|ref|ZP_07953126.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917316|gb|EFV38663.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA] Length = 238 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 160/240 (66%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR Q+R + LTR +K+AEGS LV+FG+T +L AT+EE VP +++ GW+T Sbjct: 1 MRPEGRTAEQIRPLKLTRHYTKHAEGSVLVEFGETKVLCNATVEEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNALVAAGKL--KANPMKGMVAAVSVGIVDGQAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I +I+ QK + N Sbjct: 179 EDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLQLLALARGGIDKIIQAQKAALEN 238 >gi|15892898|ref|NP_360612.1| ribonuclease PH [Rickettsia conorii str. Malish 7] gi|229586977|ref|YP_002845478.1| ribonuclease PH [Rickettsia africae ESF-5] gi|238651083|ref|YP_002916941.1| ribonuclease PH [Rickettsia peacockii str. Rustic] gi|21759407|sp|Q92GZ7|RNPH_RICCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|259494127|sp|C3PP75|RNPH_RICAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|259494128|sp|C4K2U2|RNPH_RICPU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|15620088|gb|AAL03513.1| ribonuclease PH [Rickettsia conorii str. Malish 7] gi|228022027|gb|ACP53735.1| Ribonuclease PH [Rickettsia africae ESF-5] gi|238625181|gb|ACR47887.1| ribonuclease PH [Rickettsia peacockii str. Rustic] Length = 239 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+ Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236 >gi|257884710|ref|ZP_05664363.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501] gi|257820548|gb|EEV47696.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501] Length = 451 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 121/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+V+L ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVSLKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|138896231|ref|YP_001126684.1| ribonuclease PH [Geobacillus thermodenitrificans NG80-2] gi|196250189|ref|ZP_03148883.1| ribonuclease PH [Geobacillus sp. G11MC16] gi|166228283|sp|A4IRI5|RNPH_GEOTN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|134267744|gb|ABO67939.1| Ribonuclease PH [Geobacillus thermodenitrificans NG80-2] gi|196210373|gb|EDY05138.1| ribonuclease PH [Geobacillus sp. G11MC16] Length = 255 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 115/242 (47%), Positives = 156/242 (64%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + + K+AEGS L++ GDT ++ TAT+E+KVP ++R GWIT Sbjct: 1 MRTDGRNNRELRPVHIQPHYIKHAEGSVLIEIGDTRVICTATVEDKVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GR+ EIQR+IGRALRSVV+L LG R + IDCDVIQ Sbjct: 61 AEYGMLPRATEQRNAREASKGKVSGRTMEIQRLIGRALRSVVELEQLGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VAL L + L ++ +AA S G+ + I+DL+Y Sbjct: 121 ADGGTRTASITGAYVALVLALSKLVAEGKLESL--PVRDFLAATSVGIDPEHGVILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ VD N VMT +G VE+QG+ E A+FS+ +L A+ I LI +Q+ V+ Sbjct: 179 SEDARAKVDMNVVMTGAGQFVEIQGTGEEASFSRAELEELLETAQLGIEQLITIQRRVLG 238 Query: 240 NE 241 + Sbjct: 239 EQ 240 >gi|82523945|emb|CAI78667.1| ribonuclease PH [uncultured delta proteobacterium] Length = 242 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 113/241 (46%), Positives = 162/241 (67%), Gaps = 2/241 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR+ N++R I++T K GS LV+FG+T ++ ATLE+K +++NT GW+TA Sbjct: 4 RSAGRKYNELRPINITNNFLKTTAGSALVEFGNTKVICAATLEDKSAPFLKNTGRGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+ G+ GGR+ EIQR+IGR+LR+V DL++ G + I +DCDVIQA Sbjct: 64 EYSMLPASTQTRTPRESTRGKVGGRTHEIQRLIGRSLRAVCDLNSFGEKTIYMDCDVIQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG ++AL + L+ M+ ++ + +V+AIS G++ ++DL+Y E Sbjct: 124 DGGTRTASITGGFIALVELLKKMK--ADGIVKEIPVNDYVSAISVGIIENKILLDLEYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD NFVMT SG +EVQG+AE F ++ M LA I +LI LQK ++ N Sbjct: 182 DSKADVDMNFVMTGSGKFIEVQGTAEHVPFDKNQMHEMTTLAGQGIEELIALQKKIVGNL 241 Query: 242 V 242 + Sbjct: 242 I 242 >gi|315606171|ref|ZP_07881199.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312129|gb|EFU60218.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 255 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 112/242 (46%), Positives = 157/242 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R +SLTR S EGS LV+FG+T +L A+ E VP W R++ GW+T Sbjct: 6 LRADGRTPSQLRPVSLTRGWSGTGEGSVLVEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+QEI R+IGR+LR +VD+SALG I++DCDV++ Sbjct: 66 AEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D + ++ ++VL V+A+S G++ G + DL Y Sbjct: 126 ADGGTRTASVTGAYVALADAIAWAKERGILTPSARVLTDSVSAVSVGIIDGTAMADLPYV 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED D N V T G +EVQG+AE A FS++ +L+LA A L + QK + Sbjct: 186 EDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFSREELSELLDLATAGNAQLARAQKLALEA 245 Query: 241 EV 242 + Sbjct: 246 PL 247 >gi|157803502|ref|YP_001492051.1| ribonuclease PH [Rickettsia canadensis str. McKiel] gi|166228312|sp|A8EY33|RNPH_RICCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157784765|gb|ABV73266.1| ribonuclease PH [Rickettsia canadensis str. McKiel] Length = 239 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 134/238 (56%), Positives = 169/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G TH++ +AT E VP ++R GW+T Sbjct: 1 MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATCETTVPPFLRGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREAV G+QGGR+QEIQR+IGRA+R V+DL LG RQIIIDCDVI Sbjct: 61 AEYGMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+++ALH ++ + S L +AAISCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYIALHLAIRLLMKKS--ILKVNPLISQIAAISCGIYKGETILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+ Sbjct: 179 EDSDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAMLKLAKVGAAELFKLQNQVL 236 >gi|78223083|ref|YP_384830.1| ribonuclease PH [Geobacter metallireducens GS-15] gi|123571779|sp|Q39UG9|RNPH_GEOMG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|78194338|gb|ABB32105.1| RNAse PH [Geobacter metallireducens GS-15] Length = 238 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +R I++TR K+AEG+ LV+FGDT ++ TA++EE VP ++R GW+T Sbjct: 1 MRSDGREAGSLRGINITRHYIKHAEGAVLVEFGDTKVICTASVEESVPPFLRGKGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R REA G+ GGR+ EIQR+IGR+LR+V DL+ LG R ++IDCDVIQ Sbjct: 61 AEYSMLPRSTHTRSSREAARGKIGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D L + + L +K VAA+S G++ G ++DL+Y Sbjct: 121 ADGGTRTASITGAYVALVDALHLLVERGVLPLL--PIKEAVAAVSVGIVDGNILLDLNYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD NFVMT S VEVQG+AE F+ + M A + I L +Q + +S Sbjct: 179 EDSAAEVDMNFVMTSSDRFVEVQGTAESEPFTVEQMDGMRVAAVEGIRKLFSIQNEALS 237 >gi|254512351|ref|ZP_05124418.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11] gi|221536062|gb|EEE39050.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11] Length = 237 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 122/227 (53%), Positives = 164/227 (72%), Gaps = 2/227 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR N+MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+T Sbjct: 1 MRPSGRDLNEMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + S L VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVI--SDPLVDPVAAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 EDS VD NF+MT +G ++EVQ SAE + FS+ +++LA+ + Sbjct: 179 EDSEAGVDGNFIMTGTGKLIEVQMSAEGSVFSRTQMDQLMDLAEKGV 225 >gi|8102038|gb|AAF72714.1|AF263927_2 ribonuclease PH [Carnobacterium sp. St2] Length = 364 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 111/241 (46%), Positives = 153/241 (63%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +++R +++ K+ EGS LV FGDT ++ AT+E KVP ++R GW+ Sbjct: 1 MRTNTRKNDELRLVTIETNYLKHPEGSVLVSFGDTKVICNATVEPKVPPFMRGQGKGWVH 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+ GR+ EIQR+I R+LRSV+DL LG R I +DCDVIQ Sbjct: 61 AEYAMLPRATNTRTIREAAKGKLTGRTMEIQRLIARSLRSVIDLEKLGERAITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179 ADGGTRTA+ITGA+VAL +Q + D +K ++AA+S G+ G ++DLDY Sbjct: 121 ADGGTRTASITGAFVALKMAIQTLLDSGQL--TEDPVKENIAAVSVGITKQGEAVLDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ VD N MT +G E+QG+ E ATFS D ML L K + +L ++Q + Sbjct: 179 LEDSSAAVDMNLFMTANGEFFELQGTGEEATFSNDQLMEMLELGKKGLNELFQIQTQALK 238 Query: 240 N 240 Sbjct: 239 E 239 >gi|238794526|ref|ZP_04638134.1| Ribonuclease PH [Yersinia intermedia ATCC 29909] gi|238726106|gb|EEQ17652.1| Ribonuclease PH [Yersinia intermedia ATCC 29909] Length = 238 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLVAAGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + + QK V++ Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAVLAQ 238 >gi|54023062|ref|YP_117304.1| ribonuclease PH [Nocardia farcinica IFM 10152] gi|61215825|sp|Q5Z0V1|RNPH_NOCFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|54014570|dbj|BAD55940.1| putative RNase PH [Nocardia farcinica IFM 10152] Length = 257 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 156/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++RE+ +TR + + GS LV+FG T ++ TA++ E VP W R++ GW+TA Sbjct: 4 RADGRADDELREVRITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPAWRRDSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+A+G I IDCDV+QA Sbjct: 64 EYAMLPAATHTRSGRESVKGRVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + Q + +AA+S G++ G +DL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTWLGAAGALAD-PQPISCAIAAVSVGVVDGRVRLDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF + +L+ A L +QK+ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDAALAGCEQLFAVQKEALA 240 >gi|261337982|ref|ZP_05965866.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093] gi|270277482|gb|EFA23336.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093] Length = 255 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 155/239 (64%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR ++MR I +T + EGS L+ G+T ++ TAT + VP W +++ GW+T Sbjct: 14 VRPDGRAVDEMRPIRITDSFTDVPEGSVLIACGNTRVMCTATFTQGVPRWRKDSGQGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VV++ ALG QI +DCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVNMKALGENQIQLDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ + L+ E+ +V+K V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVAMVEALRWAEERRFIRSADKVIKDSVSAVSVGVINGTPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N MT SG +E+QG+AE F++D +L+LA +L Q+ V++ Sbjct: 194 EDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFTRDELNVLLDLATKGNKELQAAQRAVLN 252 >gi|269120934|ref|YP_003309111.1| ribonuclease PH [Sebaldella termitidis ATCC 33386] gi|268614812|gb|ACZ09180.1| ribonuclease PH [Sebaldella termitidis ATCC 33386] Length = 232 Score = 325 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 104/233 (44%), Positives = 151/233 (64%), Gaps = 2/233 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +++REI +T+ + EGS L++FG+T ++ AT+EEKVP +++ + GW+T Sbjct: 1 MRNNNRKNDELREIKITKNFIMHPEGSVLIEFGNTKVICNATVEEKVPPFLKGSGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+PR+T R +RE G+ GR+ EIQR+IGR+LRS VDL LG R II+DCDVIQ Sbjct: 61 AEYSMIPRATNVRTQREVNKGKPTGRTMEIQRLIGRSLRSAVDLKKLGERTIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++AL ++ + ++ + VAAIS G + G ++DL+Y Sbjct: 121 ADGGTRTASITGGYLALETAVEQL--INSGLLSQNPVIAKVAAISVGKVKGEILLDLEYS 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS +VD N VM +E+QG+ E ATFS D + AK L ++ Sbjct: 179 EDSLAEVDMNIVMNSKNEFIEIQGTGEEATFSYDELIKFIEAAKKGFEKLFEI 231 >gi|47097379|ref|ZP_00234931.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854] gi|254898601|ref|ZP_05258525.1| ribonuclease PH [Listeria monocytogenes J0161] gi|254911909|ref|ZP_05261921.1| ribonuclease PH [Listeria monocytogenes J2818] gi|254936235|ref|ZP_05267932.1| ribonuclease PH [Listeria monocytogenes F6900] gi|47014251|gb|EAL05232.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854] gi|258608825|gb|EEW21433.1| ribonuclease PH [Listeria monocytogenes F6900] gi|293589869|gb|EFF98203.1| ribonuclease PH [Listeria monocytogenes J2818] Length = 248 Score = 325 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I +LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGICELIEIQKETLG 238 Query: 240 NEV 242 ++V Sbjct: 239 DKV 241 >gi|167644139|ref|YP_001681802.1| ribonuclease PH [Caulobacter sp. K31] gi|189043756|sp|B0T369|RNPH_CAUSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|167346569|gb|ABZ69304.1| ribonuclease PH [Caulobacter sp. K31] Length = 242 Score = 325 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 168/239 (70%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R + +R ++L V++YAEGSCL+ FG T +L TAT+EE VP W+RN GW+T Sbjct: 1 MRPSERAPDVLRVVTLETGVNRYAEGSCLISFGHTKVLVTATVEENVPGWMRNKGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRATHTRGRREAALGKQSGRTQEIQRLIGRSLRAVVDLKALGERQISLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL + ++ + + + G VAA+SCG+ P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALRIAVNYLLE--EGVLKTDPIVGQVAAVSCGVFKDTPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D+NFV+T+ G IVE+Q + E+ F++ F + LA+ I +L Q + +S Sbjct: 179 EDSQAEADSNFVLTNVGDIVEIQATGEKRGFTRGEFEQLFALAEKGIGELFVKQLEAVS 237 >gi|77919626|ref|YP_357441.1| ribonuclease PH [Pelobacter carbinolicus DSM 2380] gi|77545709|gb|ABA89271.1| RNAse PH [Pelobacter carbinolicus DSM 2380] Length = 244 Score = 325 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 121/238 (50%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R I +R ++YAEGS LV FG+T +L AT+EE VP ++R GWITA Sbjct: 8 RADGRTPSELRPIYFSRGFTRYAEGSVLVSFGETRVLCNATVEEGVPSFLRGQGQGWITA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R REA G+ GGR+ EIQR+IGR+LR++ DL LG R I+IDCDV+QA Sbjct: 68 EYSMLPRATQVRSAREATRGKVGGRTSEIQRLIGRSLRAICDLEMLGERTILIDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VALHD + + + L+ V+A+S G++ G+P++DLDY E Sbjct: 128 DGGTRTAAITGAYVALHDAVYGLVRENQL--SDSPLRDSVSAVSVGLVDGHPLLDLDYAE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D VD NFV+T SGH VEVQG+AE FS + + NLA DL +LQ + Sbjct: 186 DFRAAVDMNFVITGSGHFVEVQGTAEERPFSMEELDDLRNLALAGCRDLHRLQLRALE 243 >gi|15608480|ref|NP_215856.1| ribonuclease PH [Mycobacterium tuberculosis H37Rv] gi|15840795|ref|NP_335832.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551] gi|121637271|ref|YP_977494.1| ribonuclease PH [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661129|ref|YP_001282652.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra] gi|148822561|ref|YP_001287315.1| ribonuclease PH [Mycobacterium tuberculosis F11] gi|167969088|ref|ZP_02551365.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra] gi|215403187|ref|ZP_03415368.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987] gi|215410985|ref|ZP_03419793.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A] gi|215426669|ref|ZP_03424588.1| ribonuclease PH [Mycobacterium tuberculosis T92] gi|215430226|ref|ZP_03428145.1| ribonuclease PH [Mycobacterium tuberculosis EAS054] gi|215445522|ref|ZP_03432274.1| ribonuclease PH [Mycobacterium tuberculosis T85] gi|218753051|ref|ZP_03531847.1| ribonuclease PH [Mycobacterium tuberculosis GM 1503] gi|219557243|ref|ZP_03536319.1| ribonuclease PH [Mycobacterium tuberculosis T17] gi|224989745|ref|YP_002644432.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172] gi|253799612|ref|YP_003032613.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435] gi|254364236|ref|ZP_04980282.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str. Haarlem] gi|254550352|ref|ZP_05140799.1| ribonuclease PH [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186279|ref|ZP_05763753.1| ribonuclease PH [Mycobacterium tuberculosis CPHL_A] gi|260200397|ref|ZP_05767888.1| ribonuclease PH [Mycobacterium tuberculosis T46] gi|289442782|ref|ZP_06432526.1| ribonuclease PH [Mycobacterium tuberculosis T46] gi|289446935|ref|ZP_06436679.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A] gi|289554868|ref|ZP_06444078.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605] gi|289569353|ref|ZP_06449580.1| ribonuclease rphA [Mycobacterium tuberculosis T17] gi|289745092|ref|ZP_06504470.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987] gi|289749896|ref|ZP_06509274.1| ribonuclease rphA [Mycobacterium tuberculosis T92] gi|289753422|ref|ZP_06512800.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054] gi|289757445|ref|ZP_06516823.1| ribonuclease rphA [Mycobacterium tuberculosis T85] gi|289761501|ref|ZP_06520879.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503] gi|294994898|ref|ZP_06800589.1| ribonuclease PH [Mycobacterium tuberculosis 210] gi|297633893|ref|ZP_06951673.1| ribonuclease PH [Mycobacterium tuberculosis KZN 4207] gi|297730881|ref|ZP_06959999.1| ribonuclease PH [Mycobacterium tuberculosis KZN R506] gi|298524847|ref|ZP_07012256.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A] gi|306775519|ref|ZP_07413856.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001] gi|306780669|ref|ZP_07419006.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002] gi|306784070|ref|ZP_07422392.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003] gi|306788431|ref|ZP_07426753.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004] gi|306792760|ref|ZP_07431062.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005] gi|306797164|ref|ZP_07435466.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006] gi|306803043|ref|ZP_07439711.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008] gi|306807237|ref|ZP_07443905.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007] gi|306967434|ref|ZP_07480095.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009] gi|307079339|ref|ZP_07488509.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011] gi|307083904|ref|ZP_07493017.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012] gi|313658214|ref|ZP_07815094.1| ribonuclease PH [Mycobacterium tuberculosis KZN V2475] gi|1710618|sp|Q10628|RNPH_MYCTU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228291|sp|A1KID0|RNPH_MYCBP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228295|sp|A5U240|RNPH_MYCTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808595|sp|C1AMY5|RNPH_MYCBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|1419043|emb|CAA99973.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase) [Mycobacterium tuberculosis H37Rv] gi|13880990|gb|AAK45646.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551] gi|121492918|emb|CAL71389.1| Probable ribonuclease rphA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134149750|gb|EBA41795.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str. Haarlem] gi|148505281|gb|ABQ73090.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra] gi|148721088|gb|ABR05713.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis F11] gi|224772858|dbj|BAH25664.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172] gi|253321115|gb|ACT25718.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435] gi|289415701|gb|EFD12941.1| ribonuclease PH [Mycobacterium tuberculosis T46] gi|289419893|gb|EFD17094.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A] gi|289439500|gb|EFD21993.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605] gi|289543107|gb|EFD46755.1| ribonuclease rphA [Mycobacterium tuberculosis T17] gi|289685620|gb|EFD53108.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987] gi|289690483|gb|EFD57912.1| ribonuclease rphA [Mycobacterium tuberculosis T92] gi|289694009|gb|EFD61438.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054] gi|289709007|gb|EFD73023.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503] gi|289713009|gb|EFD77021.1| ribonuclease rphA [Mycobacterium tuberculosis T85] gi|298494641|gb|EFI29935.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A] gi|308215991|gb|EFO75390.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001] gi|308326498|gb|EFP15349.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002] gi|308331139|gb|EFP19990.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003] gi|308334980|gb|EFP23831.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004] gi|308338786|gb|EFP27637.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005] gi|308342427|gb|EFP31278.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006] gi|308346338|gb|EFP35189.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007] gi|308350261|gb|EFP39112.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008] gi|308354910|gb|EFP43761.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009] gi|308362791|gb|EFP51642.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011] gi|308366438|gb|EFP55289.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012] gi|323720157|gb|EGB29260.1| ribonuclease rphA [Mycobacterium tuberculosis CDC1551A] gi|326902963|gb|EGE49896.1| ribonuclease rphA [Mycobacterium tuberculosis W-148] gi|328459358|gb|AEB04781.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 4207] Length = 259 Score = 325 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240 >gi|89067431|ref|ZP_01154944.1| ribonuclease PH [Oceanicola granulosus HTCC2516] gi|89047000|gb|EAR53054.1| ribonuclease PH [Oceanicola granulosus HTCC2516] Length = 236 Score = 325 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 128/239 (53%), Positives = 172/239 (71%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR QMR +++ V+K+AEGSCL+K GDTH+L TA++E++ P ++RNT GW+T Sbjct: 1 MRPSGRDLGQMRPVTIETGVTKHAEGSCLIKMGDTHVLCTASIEDRPPPFLRNTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ V+ +ALG RQI +DCDV+Q Sbjct: 61 AEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVERAALGERQITVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + S L V+A+SCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMQAGDV--TSDPLGDPVSAVSCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NFVMT G ++EVQ SAE ATFS+D +L LA+ + +L LQ + Sbjct: 179 EDSVAGVDGNFVMTG-GRMIEVQMSAEGATFSRDELEQLLGLAERGVGELAALQLAAVG 236 >gi|295399427|ref|ZP_06809409.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93] gi|294978893|gb|EFG54489.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93] Length = 256 Score = 325 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R + + + K+AEGS + GDT ++ TA++++KVP ++R GWIT Sbjct: 1 MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L LG + + IDCDVIQ Sbjct: 61 AEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + K + +AA S G+ + I+DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLVE--EKKLDELPVNDFLAATSVGIDPEHGIILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ +VD N VMT +G VE+QG+ E ATFS++ +L+ A+ I LI +Q+ + Sbjct: 179 TEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTLG 238 Query: 240 N 240 Sbjct: 239 E 239 >gi|325963801|ref|YP_004241707.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3] gi|323469888|gb|ADX73573.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3] Length = 252 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 113/242 (46%), Positives = 162/242 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R IS+TR S AEGS L++FG+T +L TA+L VP W++ GW+T Sbjct: 11 VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q Sbjct: 71 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D ++ D + +Q + +AA+S G++ G P++DL Y Sbjct: 131 ADGGTRTAAITGAYVALADSIRFARDNQLIGKNAQPIIDTIAAVSVGIIDGVPMLDLPYV 190 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N V+T SG VEVQG+AE A F + +L+LA + L +Q++ +++ Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRAELDQLLDLALLGTSQLAAIQRETLAD 250 Query: 241 EV 242 + Sbjct: 251 TL 252 >gi|169335158|ref|ZP_02862351.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM 17244] gi|169257896|gb|EDS71862.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM 17244] Length = 241 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 105/239 (43%), Positives = 153/239 (64%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R+ ++ RE+ +TR + Y +G L++ G+T ++ +A +E +VP ++R GWIT Sbjct: 2 VRSDNRKFDEKREVKITRNYTMYPDGCVLIESGNTKVICSAFIENRVPPFLRGEGTGWIT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLP ST R +R+ + GRS EIQR+IGR+LRSVVDLS LG + I+IDCDVIQ Sbjct: 62 CEYSMLPSSTQTRKQRDINRLKLDGRSSEIQRLIGRSLRSVVDLSILGEKTIMIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGA+VAL+D L M + +L L +AAIS G++ P++DL Y Sbjct: 122 ADGGTRVASITGAFVALYDALSKMVEKGEIERL--PLTSFLAAISVGIVENEPLLDLCYI 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D N VM + G +E+ + E+ ++ +L LAK I +LI++QK+V+ Sbjct: 180 EDSNAIADMNVVMNEYGEFIELGMTGEKRPIKEEELNKLLILAKKGIKELIEIQKEVLG 238 >gi|270308459|ref|YP_003330517.1| ribonuclease PH [Dehalococcoides sp. VS] gi|270154351|gb|ACZ62189.1| ribonuclease PH [Dehalococcoides sp. VS] Length = 239 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 110/233 (47%), Positives = 150/233 (64%), Gaps = 2/233 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R I++T +AEGS L++ G T ++ + ++E+KVP ++RN+ GW+TA Sbjct: 3 RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R +R++ +G+ GRSQEIQR+IGR+LRS VDL+ALG R IIDCDVIQA Sbjct: 63 EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLTALGERSFIIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGA++AL+ + M D VAA+S + G ++D Y E Sbjct: 123 DAGTRTASITGAYIALYLAFKKMVDMG--ILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D +VD N VM D VE+QG+AE TFS+D +L L + I L +Q Sbjct: 181 DFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGESGIKQLFDIQ 233 >gi|312110014|ref|YP_003988330.1| ribonuclease PH [Geobacillus sp. Y4.1MC1] gi|311215115|gb|ADP73719.1| ribonuclease PH [Geobacillus sp. Y4.1MC1] Length = 256 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R + + + K+AEGS + GDT ++ TA++++KVP ++R GWIT Sbjct: 1 MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L LG + + IDCDVIQ Sbjct: 61 AEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + K + +AA S G+ + I+DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLVE--EKKLDELPVNDFLAATSVGIDPEHGIILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ +VD N VMT +G VE+QG+ E ATFS++ +L+ A+ I LI +Q+ + Sbjct: 179 TEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTLG 238 Query: 240 N 240 Sbjct: 239 E 239 >gi|15827593|ref|NP_301856.1| ribonuclease PH [Mycobacterium leprae TN] gi|221230070|ref|YP_002503486.1| ribonuclease PH [Mycobacterium leprae Br4923] gi|585906|sp|P37939|RNPH_MYCLE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808596|sp|B8ZR59|RNPH_MYCLB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|466905|gb|AAA50880.1| rnpH [Mycobacterium leprae] gi|13093144|emb|CAC31555.1| ribonuclease PH [Mycobacterium leprae] gi|219933177|emb|CAR71269.1| ribonuclease PH [Mycobacterium leprae Br4923] Length = 259 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 104/238 (43%), Positives = 155/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR +++ GS L++FG T ++ TA+ E VP W + + GW+TA Sbjct: 4 RADGRLDDELRAVVITRGFTEHPAGSVLIEFGHTKVMCTASPTEGVPRWRKGSGKGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSERESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TGA+VAL D + ++ + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAVTGAYVALADAVTYLSAAGRLLD-PRPLSCAIAAVSVGVVDGRIRVDLSYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N + TD+G +VE+QG+ E ATF + +L++A L Q+D ++ Sbjct: 183 DSRAEVDMNVIATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFVAQRDALA 240 >gi|255019644|ref|ZP_05291723.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756] gi|254970867|gb|EET28350.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756] Length = 241 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 124/234 (52%), Positives = 155/234 (66%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +R + + R +KYAEGS L+ GDT +L TA++E+KVP +++ GW+TA Sbjct: 3 RPSGRDAQTLRPVEIIRPFTKYAEGSVLIACGDTRVLCTASIEDKVPPFLKGQGRGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R+ REA G+ GGR+ EIQR+IGR+LR+ VDL ALG R + IDCDV+QA Sbjct: 63 EYGMLPRSTQERMPREAAKGKIGGRTHEIQRLIGRSLRAAVDLEALGERTVWIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA +AL D LQ + + VAA+S G+ I+DLDY E Sbjct: 123 DGGTRTASITGACIALADALQGL--LQRGVLTHNPWRHWVAAVSVGIREDEAILDLDYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DST +VD N VMTD G VEVQG+AE A FS ML LA+ I LI QK Sbjct: 181 DSTAEVDMNVVMTDDGRFVEVQGTAEGAAFSAARMADMLLLARRGIDRLIARQK 234 >gi|126652649|ref|ZP_01724810.1| ribonuclease PH [Bacillus sp. B14905] gi|126590498|gb|EAZ84616.1| ribonuclease PH [Bacillus sp. B14905] Length = 248 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 107/241 (44%), Positives = 154/241 (63%), Gaps = 3/241 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + + + EGS L++ G+T ++ TAT+E+KVP ++R GWITA Sbjct: 3 RFDGRMADELRPVKMVGEYLLHPEGSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQA Sbjct: 63 EYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYG 180 DGGTRTA+ITGA+VA+ + + + + +AA S G++ ++DL+Y Sbjct: 123 DGGTRTASITGAFVAMTQAIAKFAEEKPFVKF--PVTDFLAATSVGIVEEQGAVLDLNYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED VD N VMT +G VE+QG+ E ATFS++ +L L + I L++LQK ++ Sbjct: 181 EDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNDLLALGEKGIQQLVELQKTALAE 240 Query: 241 E 241 + Sbjct: 241 Q 241 >gi|325266593|ref|ZP_08133270.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394] gi|324982036|gb|EGC17671.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394] Length = 292 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 113/237 (47%), Positives = 163/237 (68%), Gaps = 3/237 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R + +R I++T +A+GS L+ G+T ++ TAT++E +P ++R GW+TA Sbjct: 55 RTD-RATDALRPITITPNFLPHADGSVLMACGNTKVICTATIDENIPPFLRGKGQGWVTA 113 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VD++ LG RQI+IDCDVIQA Sbjct: 114 EYGMLPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRAAVDMTKLGERQILIDCDVIQA 173 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL ++ + ++ L G VAAIS G++ G P++DLDY E Sbjct: 174 DGGTRTASITGAFVALQIAVRKL--LADGRIAENPLVGSVAAISVGVVGGVPLLDLDYPE 231 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N VM ++ I+E+QG+AE A F D ++ L + I +L +LQ+ + Sbjct: 232 DSGCDSDINLVMLNADKIIEIQGTAEGAAFGMDELQQLVALGQKGIRELSELQRQAV 288 >gi|260204601|ref|ZP_05772092.1| ribonuclease PH [Mycobacterium tuberculosis K85] gi|289574006|ref|ZP_06454233.1| ribonuclease rphA [Mycobacterium tuberculosis K85] gi|289538437|gb|EFD43015.1| ribonuclease rphA [Mycobacterium tuberculosis K85] Length = 259 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++ Sbjct: 183 DSPAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240 >gi|325290671|ref|YP_004266852.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271] gi|324966072|gb|ADY56851.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271] Length = 246 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 111/239 (46%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R++ R ++R + +TRR ++ EGS L++ G T +L TA++E++VP +++ GWITA Sbjct: 3 RIAERNNQELRPVRITRRYTEIPEGSVLIEIGKTMVLCTASIEDRVPPFLKGAGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+TG R +RE+ G+ GR+ EIQR+IGRALRSVVDLS LG + I +DCDV+QA Sbjct: 63 EYSMLPRATGVRNQRESSKGKLSGRTMEIQRLIGRALRSVVDLSKLGEKTIWLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VALHD + + + + +AA+S G + G ++DL Y E Sbjct: 123 DGGTRTAAITGAYVALHDAVSFL--LGAGLLKTNPITDSLAAVSVGKVRGEYLLDLAYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N VMT SG ++EVQG+AE+ F + +L+LA++ I L+ Q+ + Sbjct: 181 DSKAEVDMNVVMTGSGKLIEVQGTAEKEPFDRKELDELLDLAENGIRTLMGYQRQALEE 239 >gi|308378909|ref|ZP_07484288.2| ribonuclease rphA [Mycobacterium tuberculosis SUMu010] gi|308358854|gb|EFP47705.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu010] Length = 296 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA Sbjct: 41 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 100 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 101 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 160 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 161 DGGTRTAAITGAYVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 219 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++ Sbjct: 220 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 277 >gi|254449788|ref|ZP_05063225.1| ribonuclease PH [Octadecabacter antarcticus 238] gi|198264194|gb|EDY88464.1| ribonuclease PH [Octadecabacter antarcticus 238] Length = 235 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 129/239 (53%), Positives = 172/239 (71%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ ++MR IS+ V+++AEGSCL+K GDTH+L TA+++E+VP +++N+ GW+T Sbjct: 1 MRPSGRKIDEMRSISIEVNVTRHAEGSCLIKCGDTHVLCTASIDERVPPFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G Q GR+QEIQR+IGR+LR+ VD ALG RQIIIDCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALGERQIIIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + S L VAA+SCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMKAGDVI--SDPLLIPVAAVSCGIYAGQSVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NFVMT ++E+Q SAE +TFS+D AM++LA IA+L Q + Sbjct: 178 EDSEAGVDGNFVMTGD-KLIEIQMSAEGSTFSRDQMNAMMDLADKGIAELTAAQIAAVG 235 >gi|315282015|ref|ZP_07870521.1| ribonuclease PH [Listeria marthii FSL S4-120] gi|313614342|gb|EFR87980.1| ribonuclease PH [Listeria marthii FSL S4-120] Length = 248 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRFDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEETPFTKF--PVKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQKETLG 238 Query: 240 NEV 242 +V Sbjct: 239 EKV 241 >gi|258516735|ref|YP_003192957.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771] gi|257780440|gb|ACV64334.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771] Length = 244 Score = 325 bits (833), Expect = 5e-87, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++MR++ +TR +KYAEGS L++ GDTH+L TAT+E+KVP ++R GW+TA Sbjct: 3 RVDGRKPDEMRQVRMTRNFNKYAEGSVLIEVGDTHVLCTATVEDKVPPFLRGANKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE G+ GR+ EIQR+IGRALRSVV+L ALG R +++DCDV+QA Sbjct: 63 EYAMLPRATDLRTGRE--RGKVSGRTMEIQRLIGRALRSVVNLEALGERTVLVDCDVLQA 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ D L + + +K +AA S G + ++DL Y E Sbjct: 121 DGGTRTASITGAFVAMTDALYKLAVNGQIKKF--PIKEFIAATSVGRVNNEMVLDLCYKE 178 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N VMT VE+QG+ E ATFS+ ++L+LA I LI Q +V+ + Sbjct: 179 DSAAEVDMNIVMTGGDRFVEIQGTGEEATFSRAEVNSLLDLAAGGIKSLIAFQSEVLGS 237 >gi|261346766|ref|ZP_05974410.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541] gi|282565165|gb|EFB70700.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541] Length = 237 Score = 325 bits (833), Expect = 5e-87, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +QMR I +TR +K+AEGS L++FGDT +L TAT+E+ VP +++ GW+T Sbjct: 1 MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCTATVEDGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L +M + LK VAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALNNM--IAQGKITKSPLKAMVAAVSVGIVKQEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM D G ++EVQG+AE FS + +L LAK + + + Q++ + Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQREALK 237 >gi|293569789|ref|ZP_06680876.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071] gi|291587537|gb|EFF19414.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071] Length = 451 Score = 325 bits (833), Expect = 5e-87, Method: Composition-based stats. Identities = 120/242 (49%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 A+Y MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL +G R II+DCDVIQ Sbjct: 61 AKYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKIGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|82523716|emb|CAI78497.1| hypothetical protein [uncultured beta proteobacterium] Length = 243 Score = 325 bits (833), Expect = 5e-87, Method: Composition-based stats. Identities = 115/238 (48%), Positives = 156/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R +S TR +K+AEGS LV GDT +L TA++ +K+P + + GW+TA Sbjct: 6 RPSGRAPDALRTLSFTRGFTKHAEGSVLVSMGDTRVLCTASVLDKIPPHKKGSGEGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LR+VVDL LG R + IDCDV+QA Sbjct: 66 EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+I GA+VA+ D + + + L +AA+S G+ G+P++DLDY E Sbjct: 126 DGGTRCASICGAYVAVADAVAGLLREGKLAET--PLNDSIAAVSVGVYEGHPVLDLDYIE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D D N VMT SG IVE+QG+AE FS+ A+++LA I + Q+ + Sbjct: 184 DFECDTDMNVVMTGSGGIVEIQGTAEGVPFSRATLDALVDLAAAGIVQISTAQQAALK 241 >gi|239827937|ref|YP_002950561.1| ribonuclease PH [Geobacillus sp. WCH70] gi|259494121|sp|C5D5M7|RNPH_GEOSW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|239808230|gb|ACS25295.1| ribonuclease PH [Geobacillus sp. WCH70] Length = 255 Score = 324 bits (832), Expect = 5e-87, Method: Composition-based stats. Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R + + + K+AEGS + GDT ++ TA++++KVP ++R GWIT Sbjct: 1 MRIDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L LG + + IDCDVIQ Sbjct: 61 AEYAMLPRATEQRNVRESSKGKLSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VA+ + + K + +AA S G+ + I+DL+Y Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLME--EKKLDELPVNDFLAATSVGIDPEHGIILDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ +VD N VMT +G VE+QG+ E ATFS++ +L+ A+ I LI +Q+ + Sbjct: 179 AEDARAEVDMNIVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTLG 238 Query: 240 N 240 Sbjct: 239 E 239 >gi|16803278|ref|NP_464763.1| ribonuclease PH [Listeria monocytogenes EGD-e] gi|46907457|ref|YP_013846.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365] gi|47093490|ref|ZP_00231252.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858] gi|217964696|ref|YP_002350374.1| ribonuclease PH [Listeria monocytogenes HCC23] gi|224503807|ref|ZP_03672114.1| ribonuclease PH [Listeria monocytogenes FSL R2-561] gi|226223838|ref|YP_002757945.1| ribonuclease PH [Listeria monocytogenes Clip81459] gi|254823508|ref|ZP_05228509.1| ribonuclease PH [Listeria monocytogenes FSL J1-194] gi|254932884|ref|ZP_05266243.1| ribonuclease PH [Listeria monocytogenes HPB2262] gi|284801558|ref|YP_003413423.1| ribonuclease PH [Listeria monocytogenes 08-5578] gi|284994700|ref|YP_003416468.1| ribonuclease PH [Listeria monocytogenes 08-5923] gi|290893280|ref|ZP_06556266.1| ribonuclease PH [Listeria monocytogenes FSL J2-071] gi|21759401|sp|Q8Y7N6|RNPH_LISMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215964|sp|Q720J1|RNPH_LISMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808591|sp|B8DHZ4|RNPH_LISMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|259494123|sp|C1L2E3|RNPH_LISMC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|16410654|emb|CAC99316.1| lmo1238 [Listeria monocytogenes EGD-e] gi|46880725|gb|AAT04023.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365] gi|47018108|gb|EAL08879.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858] gi|217333966|gb|ACK39760.1| ribonuclease PH [Listeria monocytogenes HCC23] gi|225876300|emb|CAS05009.1| Putative ribonuclease PH [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|284057120|gb|ADB68061.1| ribonuclease PH [Listeria monocytogenes 08-5578] gi|284060167|gb|ADB71106.1| ribonuclease PH [Listeria monocytogenes 08-5923] gi|290557088|gb|EFD90616.1| ribonuclease PH [Listeria monocytogenes FSL J2-071] gi|293584438|gb|EFF96470.1| ribonuclease PH [Listeria monocytogenes HPB2262] gi|293592728|gb|EFG00489.1| ribonuclease PH [Listeria monocytogenes FSL J1-194] gi|307570743|emb|CAR83922.1| ribonuclease PH [Listeria monocytogenes L99] gi|313609161|gb|EFR84844.1| ribonuclease PH [Listeria monocytogenes FSL F2-208] gi|328475256|gb|EGF46037.1| ribonuclease PH [Listeria monocytogenes 220] gi|332311624|gb|EGJ24719.1| Ribonuclease PH [Listeria monocytogenes str. Scott A] Length = 248 Score = 324 bits (832), Expect = 5e-87, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238 Query: 240 NEV 242 ++V Sbjct: 239 DKV 241 >gi|302381326|ref|YP_003817149.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264] gi|302191954|gb|ADK99525.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264] Length = 242 Score = 324 bits (832), Expect = 6e-87, Method: Composition-based stats. Identities = 125/235 (53%), Positives = 164/235 (69%), Gaps = 2/235 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R Q+R ++L V++YAEGSCLV FG T +L TA++EE VP W+R GW+T Sbjct: 1 MRPSDRTPEQLRAVTLETGVNRYAEGSCLVSFGHTKVLVTASVEENVPGWMRGKGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQ++IDCDVIQ Sbjct: 61 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVLIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVA+ L ++ + + VAA+SCG+ P++DLDY Sbjct: 121 ADGGTRTASITGAWVAMATALNYLR--AEGVMKVDPILDQVAAVSCGIFADTPVLDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 EDS + D NFV+T SG IVE+Q + E+ FS+ F + LA+ DL LQ+ Sbjct: 179 EDSNAEADGNFVLTGSGTIVEIQATGEKRGFSRPEFDRLFQLAELGCNDLFALQR 233 >gi|254524022|ref|ZP_05136077.1| ribonuclease PH [Stenotrophomonas sp. SKA14] gi|219721613|gb|EED40138.1| ribonuclease PH [Stenotrophomonas sp. SKA14] Length = 241 Score = 324 bits (832), Expect = 6e-87, Method: Composition-based stats. Identities = 116/228 (50%), Positives = 157/228 (68%), Gaps = 2/228 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R + + R +++AEGS LV FG+T +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMKRGDI--KRNPILGAVAAVSVGVYRGTPVLDLDYAE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 DS D D N VM D G +E+QG+AE F +D A+L LA+ + + Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVRE 230 >gi|212712586|ref|ZP_03320714.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM 30120] gi|212684802|gb|EEB44330.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM 30120] Length = 237 Score = 324 bits (832), Expect = 6e-87, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +QMR I +TR +K+AEGS L++FGDT +L AT+EE VP +++ GWIT Sbjct: 1 MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +REA G+Q GR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L +M + LK VAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASISGACVALVDALNNMVAQGKLAK--SPLKSMVAAVSVGIVGQEGLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM + G ++EVQG+AE FS + +L LAK + + + Q++ + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQREALK 237 >gi|332289145|ref|YP_004419997.1| ribonuclease PH [Gallibacterium anatis UMN179] gi|330432041|gb|AEC17100.1| ribonuclease PH [Gallibacterium anatis UMN179] Length = 239 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 123/241 (51%), Positives = 166/241 (68%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R + MR I +TR +K+AEGS L++FGDT +L AT+EE VP +++ GWIT Sbjct: 1 MRPNNRDNHAMRPIKITRHYTKHAEGSVLIEFGDTKVLCNATVEETVPRFLKGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA G+Q GR+ EIQR+IGR+LR++VDL+ LG R I +DCDVIQ Sbjct: 61 AEYGMLPRATNVRTQREAAKGKQSGRTMEIQRLIGRSLRAMVDLTLLGERTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+G+ VALHD +Q + D +K VAA+S G++ + DL+Y Sbjct: 121 ADGGTRTAAISGSAVALHDAIQTLLD--KGLIKQNPIKNLVAAVSVGIVEQQQLCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMTD G ++EVQG+AE FS D A+L+LAK IA + + QK + + Sbjct: 179 EDSNAETDMNVVMTDDGRMIEVQGTAEGEPFSHDELLALLDLAKQGIAQINQAQKAALQD 238 Query: 241 E 241 + Sbjct: 239 K 239 >gi|242237612|ref|YP_002985793.1| ribonuclease PH [Dickeya dadantii Ech703] gi|242129669|gb|ACS83971.1| ribonuclease PH [Dickeya dadantii Ech703] Length = 238 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q R I+LTR +K+AEG+ LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPTGRSAQQTRPITLTRHYTKHAEGAVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAARGKQGGRTLEIQRLIARSLRAAVDLAKLGEYTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D + + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADAIAGLVASGKLAK--NPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VMT+ G ++EVQG+AE FS + +L LA+ I D+I+ QK ++N Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEQLLELLALARGGIEDIIRAQKAALAN 238 >gi|190575702|ref|YP_001973547.1| ribonuclease PH [Stenotrophomonas maltophilia K279a] gi|226736944|sp|B2FT17|RNPH_STRMK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|190013624|emb|CAQ47259.1| putative ribonuclease PH [Stenotrophomonas maltophilia K279a] Length = 241 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 116/228 (50%), Positives = 157/228 (68%), Gaps = 2/228 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ +Q+R + + R +++AEGS LV FG+T +L TA++E +VP ++R GW+TA Sbjct: 5 RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMKRGDI--KRNPILGAVAAVSVGVYRGTPVLDLDYAE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 DS D D N VM D G +E+QG+AE F +D A+L LA+ + + Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVGE 230 >gi|157783152|ref|YP_001491547.1| defective ribonuclease PH [Escherichia coli str. K-12 substr. MG1655] gi|298351814|sp|P0CG19|RNPH_ECOLI RecName: Full=Inactive ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|290493|gb|AAA61996.1| RNase PH [Escherichia coli] gi|157672248|gb|ABV59576.1| defective ribonuclease PH [Escherichia coli str. K-12 substr. MG1655] Length = 228 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 119/213 (55%), Positives = 153/213 (71%), Gaps = 2/213 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWIT Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213 EDS + D N VMT+ G I+EVQG+AE F+ Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTH 211 >gi|241762326|ref|ZP_04760406.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373120|gb|EER62759.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 234 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 5/239 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R +S+ +++AEGSCL+ FGDT +L TA+LEE++P W+R GW+T Sbjct: 1 MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR+ +DL LG RQI IDCDV+Q Sbjct: 61 AEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G WVAL + + + VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGGWVALRLAVNKLLASGQL--TEDPIISQVAAVSCGISQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST + DANFVM ++EVQ SAE A + ++ +L LA+ + QK ++ Sbjct: 179 EDSTAEADANFVMMGDSRLIEVQASAEGAPYDEE---GLLRLARMGCQQIFAEQKKAVA 234 >gi|254460324|ref|ZP_05073740.1| ribonuclease PH [Rhodobacterales bacterium HTCC2083] gi|206676913|gb|EDZ41400.1| ribonuclease PH [Rhodobacteraceae bacterium HTCC2083] Length = 237 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 126/239 (52%), Positives = 171/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR NQMR++S+ V+K+AEGSC++K GDTH+L TATLE +VP +I+ + GW+T Sbjct: 1 MRPSGRDLNQMRDVSIETNVTKHAEGSCMIKMGDTHVLCTATLENRVPPFIKGSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRSTTSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + S L VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRCASITGGWVALKLAVNKLIKAGEI--TSDPLISPVAAISCGIYAGQPVLDLDYP 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF+M +G ++E Q SAE +T+S+D +++LA+ +++L +Q + Sbjct: 179 EDSEAGVDGNFIMLANGQMIETQMSAEGSTYSRDQMNQLIDLAEKGVSELAAMQLAATA 237 >gi|157828824|ref|YP_001495066.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933550|ref|YP_001650339.1| ribonuclease PH [Rickettsia rickettsii str. Iowa] gi|166228313|sp|A8GT33|RNPH_RICRS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043770|sp|B0BUM3|RNPH_RICRO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157801305|gb|ABV76558.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908637|gb|ABY72933.1| ribonuclease PH [Rickettsia rickettsii str. Iowa] Length = 239 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGRA+R V+D+ LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKREAALGQQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G I+DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRVLKVNPLISQIAAISCGIYKGEVILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD+NFV +G+++EVQG+AE+ FS++ F AML LAK A+L KLQ V+ Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236 >gi|257869443|ref|ZP_05649096.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2] gi|257803607|gb|EEV32429.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2] Length = 450 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +R + + V K+ EGS ++ FGDT ++ +AT+E++VP ++R++ GW+T Sbjct: 1 MRHDGRKAGSIRPVEIKTNVFKHPEGSVVISFGDTTVICSATIEDRVPPFLRDSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDVIQ Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + + +N +K H+AAIS G+L + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIDQL--LTNHELTEDPIKEHLAAISVGILPDNTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VMT+SG +E+QG+ E ATF ML K I +LI QK+ + Sbjct: 179 EEDSAAAVDMNLVMTESGRFIEIQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237 >gi|254670670|emb|CBA06757.1| ribonuclease PH [Neisseria meningitidis alpha153] gi|261392252|emb|CAX49772.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria meningitidis 8013] gi|325204479|gb|ADY99932.1| ribonuclease PH [Neisseria meningitidis M01-240355] Length = 242 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 172/239 (71%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+S R + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R GW+T Sbjct: 5 IRIS-RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240 >gi|170749350|ref|YP_001755610.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831] gi|226736917|sp|B1M4N1|RNPH_METRJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|170655872|gb|ACB24927.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831] Length = 237 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 135/239 (56%), Positives = 172/239 (71%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R +SL R VS+YAEGSCLV FG+T +L TA+LEE+ P W+R + GW+T Sbjct: 1 MRPSKRAADELRPVSLERAVSRYAEGSCLVSFGNTRVLCTASLEERAPPWLRGSGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE SG+ GR+QEIQR+IGR+LR+V +L A+G RQI IDCDVIQ Sbjct: 61 AEYAMLPRATHERTRREVGSGKPSGRTQEIQRLIGRSLRAVTNLPAMGERQITIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVALHDC M + L+ HVAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTAAITGAWVALHDCFAWMR--TRSIISVDPLRDHVAAVSCGLYKGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + DANFV+T G IVEVQG+AE F+Q+ +L LA+ L+ LQK+ I+ Sbjct: 179 EDSAAETDANFVLTGRGGIVEVQGTAEMEPFTQEQLLELLGLARAGTERLVALQKEAIA 237 >gi|269793131|ref|YP_003318035.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100766|gb|ACZ19753.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589] Length = 248 Score = 324 bits (831), Expect = 8e-87, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R + + R ++YAEGS L+++G+TH+L TA++EEKVP ++R + GW++A Sbjct: 3 RIDGRSSGDLRPVRIERGCNRYAEGSALIRWGNTHVLCTASVEEKVPQFLRGSGRGWVSA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R +RE G+ R QEIQR+IGR+LR+ VDLS LG R I IDCDV+QA Sbjct: 63 EYAMLPRSTHQRTQREISRGKPNARGQEIQRLIGRSLRASVDLSLLGERTIWIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAIT ++VAL D + + SN S + VAA+S G++ G ++DL Y E Sbjct: 123 DGGTRTAAITASFVALVDACRWL--MSNGLVGSMPVVHQVAAVSAGIVAGEVMLDLCYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS+ VD N VM + G VE+QG+ E A FS + F ML+LA I L LQ +V+ Sbjct: 181 DSSAQVDCNVVMAEDGRFVEIQGTGEDALFSMESFRDMLSLADVGIRRLHALQLEVLG 238 >gi|238764323|ref|ZP_04625274.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638] gi|238697474|gb|EEP90240.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638] Length = 238 Score = 324 bits (831), Expect = 8e-87, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 160/240 (66%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPAGRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLVAAGKL--KANPMKGLVAAVSVGIVKGEALCDLEYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L LA+ I + QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLELARGGIETIFLAQKAALEQ 238 >gi|237748601|ref|ZP_04579081.1| ribonuclease PH [Oxalobacter formigenes OXCC13] gi|229379963|gb|EEO30054.1| ribonuclease PH [Oxalobacter formigenes OXCC13] Length = 247 Score = 324 bits (831), Expect = 8e-87, Method: Composition-based stats. Identities = 121/239 (50%), Positives = 160/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR + MR I R +KYAEGS L FGDT ++ TA++EE VP ++R GW+T Sbjct: 7 IRANGRPLDSMRSIEFIRNYTKYAEGSVLTVFGDTKVICTASIEESVPPFLRGRGRGWLT 66 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA GRQ GR+QEIQR+IGR++R+ DL A G R + +DCDVIQ Sbjct: 67 AEYGMLPRSTHTRMDREAARGRQSGRTQEIQRLIGRSIRAAFDLDAFGERTLKLDCDVIQ 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +A +D M + L+ VAAIS G+ G P++DLDY Sbjct: 127 ADGGTRTASISGVMIAAYDAFSMMVE--EGLIDKVPLRHFVAAISVGVNQGVPLLDLDYQ 184 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST D D N VMT++G VE+QG+AE FS+ ML +A+ I++LI +QK V+ Sbjct: 185 EDSTCDTDMNVVMTEAGEFVEIQGTAEGGAFSRQTLNDMLGMAEKGISELIGMQKKVLG 243 >gi|332686498|ref|YP_004456272.1| ribonuclease PH [Melissococcus plutonius ATCC 35311] gi|332370507|dbj|BAK21463.1| ribonuclease PH [Melissococcus plutonius ATCC 35311] Length = 453 Score = 324 bits (831), Expect = 8e-87, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 161/239 (67%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR E Q+R I++ V KY EGS ++ FGDT ++ +AT+EEKVP ++++++ GW+T Sbjct: 2 IRNDGRGEQQLRSITIETNVFKYPEGSVVISFGDTKVICSATIEEKVPFFLKDSEKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +R++ G+ GR+ EIQR+I R+LR+VVDL L + IIIDCDVIQ Sbjct: 62 AEYSMLPRATQRRNRRDSNKGKLNGRATEIQRLISRSLRAVVDLEKLTGKSIIIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + +K ++AA+S GML I DL+Y Sbjct: 122 ADGGTRTASITGAFVALKLAVEKL--LQQGLLTENPIKEYLAAVSVGMLSNDNCITDLNY 179 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ VD N VMT++G+ VE+QG+ E ATFS + ML K I +LI +QK I Sbjct: 180 EEDTAAKVDMNLVMTETGNFVEIQGTGEEATFSGEELNTMLFYGKQAIEELISIQKQAI 238 >gi|291166728|gb|EFE28774.1| ribonuclease PH/Ham1 protein [Filifactor alocis ATCC 35896] Length = 471 Score = 323 bits (830), Expect = 9e-87, Method: Composition-based stats. Identities = 106/233 (45%), Positives = 158/233 (67%), Gaps = 2/233 (0%) Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69 Q+R+I++ ++KYAEGS LV FGDT ++ TA++EEKVP +++ T GW++AEY MLPRS Sbjct: 6 QLRDINIETGINKYAEGSVLVSFGDTRVICTASVEEKVPAFLKGTGKGWVSAEYAMLPRS 65 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 T R KR++ G+ GR QEIQR+IGR+LR+ +D LG R I IDCDVIQADGGTRTA+ Sbjct: 66 TEQRKKRDSSRGKVDGRGQEIQRLIGRSLRNAIDFDLLGERTIWIDCDVIQADGGTRTAS 125 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I+G++VA+ + + D K + +++A+S G++ G I+DL+Y DS DVD Sbjct: 126 ISGSFVAMAIACKQLYD--KKMIEEFPISHYISAVSVGIVNGKNILDLNYEFDSKADVDL 183 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N VM ++ VE+QG+AE F + ++L LA+ ++I+LQK + ++ Sbjct: 184 NVVMNENLEYVELQGTAEGVAFRRQQLDSLLTLAEIGCKEIIELQKTALGKQI 236 >gi|313619283|gb|EFR91024.1| ribonuclease PH [Listeria innocua FSL S4-378] gi|313624060|gb|EFR94144.1| ribonuclease PH [Listeria innocua FSL J1-023] Length = 248 Score = 323 bits (830), Expect = 9e-87, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 164/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR++N +REI +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEEVPFTKF--PVKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQKETLG 238 Query: 240 NEV 242 +++ Sbjct: 239 DKI 241 >gi|294101305|ref|YP_003553163.1| ribonuclease PH [Aminobacterium colombiense DSM 12261] gi|293616285|gb|ADE56439.1| ribonuclease PH [Aminobacterium colombiense DSM 12261] Length = 260 Score = 323 bits (830), Expect = 9e-87, Method: Composition-based stats. Identities = 115/238 (48%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N++R IS R + YAEG+ L FGDT ++ TA++E++VP ++R + GWI+ Sbjct: 6 LRSDGRKFNEIRPISFQRHFTCYAEGAVLACFGDTKVICTASVEDRVPPFLRGSGQGWIS 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R R G GRS EIQR+IGR+LR+ DLS LG R I +DCDVIQ Sbjct: 66 AEYAMLPRATAERTSRMTSKGAISGRSHEIQRLIGRSLRASADLSLLGERTIWLDCDVIQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GA+VAL D ++ ++ + +K VAA+S G + G ++DL Y Sbjct: 126 ADGGTRTAAISGAFVALFDAMRCLK--AQDVIEKIPVKSFVAAVSVGKIEGSLLLDLCYE 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD N VM ++E+QG+ ER TF++D F AML+LA+D I ++ Q +V+ Sbjct: 184 EDSCADVDCNVVMNGDKQLIEIQGTGERGTFARDEFDAMLDLAEDGIQTIMFSQAEVL 241 >gi|116872609|ref|YP_849390.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463713|sp|A0AHX9|RNPH_LISW6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|116741487|emb|CAK20611.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334] Length = 248 Score = 323 bits (830), Expect = 9e-87, Method: Composition-based stats. Identities = 111/243 (45%), Positives = 165/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR++N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGREKNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDE--QVPFTKFPVKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+++ Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKEILG 238 Query: 240 NEV 242 +++ Sbjct: 239 DKI 241 >gi|256396655|ref|YP_003118219.1| ribonuclease PH [Catenulispora acidiphila DSM 44928] gi|256362881|gb|ACU76378.1| ribonuclease PH [Catenulispora acidiphila DSM 44928] Length = 243 Score = 323 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 158/239 (66%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ Q+R ++LTR+ S + EGS LV+FG T +L TA++ E VP W+R + GW+TA Sbjct: 5 RVDGRKVGQLRPVTLTRKWSIHPEGSVLVEFGQTKVLCTASVTEGVPRWLRGSGKGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+QEI R+IGRALR+VVD ALG II+DCDV+QA Sbjct: 65 EYAMLPRATNTRGDRESVKGKVGGRTQEISRLIGRALRAVVDTKALGENTIIVDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + M D + L G V+A+S G++ G P++DL Y E Sbjct: 125 DGGTRTAAITGAYVALQDAVTWMRDKKMIKASREPLAGSVSAVSVGIIDGVPMLDLCYEE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + D N V T G VEVQG+AE A F + A+L+LA +L Q + + Sbjct: 185 DVRAETDMNVVCTADGKFVEVQGTAEGAPFDRAELDALLDLAAAGCRELASHQVKALLS 243 >gi|332981492|ref|YP_004462933.1| ribonuclease PH [Mahella australiensis 50-1 BON] gi|332699170|gb|AEE96111.1| ribonuclease PH [Mahella australiensis 50-1 BON] Length = 247 Score = 323 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 116/240 (48%), Positives = 157/240 (65%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +Q+R ++LTR K+ +GS L++ G+T ++ TA +E+KVP +++ T GWIT Sbjct: 1 MRAYHRGFDQLRPVTLTRDYLKHPDGSVLIEAGETKIICTAMIEDKVPPFLKGTGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +EYGMLP ST R RE+ G GR+QEIQR+IGR LRSVVD+SALG R I IDCDVIQ Sbjct: 61 SEYGMLPGSTQARKIRESTRGHIEGRTQEIQRIIGRTLRSVVDISALGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG++VAL + + + K + VAA+S G++ G ++DL Y Sbjct: 121 ADGGTRTASITGSFVALAIAINKLFE--KKKIERFPISNLVAAVSVGIVDGQIMLDLCYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED+ VD N MTD G VEVQG+ E A FS+ ++NLA I +L+ LQ D + Sbjct: 179 EDARAQVDMNIAMTDDGRFVEVQGTGEAAPFSRRQMDELINLADKGIQELMALQIDCLGE 238 >gi|297625967|ref|YP_003687730.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921732|emb|CBL56290.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 253 Score = 323 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 115/238 (48%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +S+TR +AEGSCL++ G T +L A++ E VP W R + GW+T+ Sbjct: 10 RSDGRSLDQLRPVSITRHWLDHAEGSCLIEAGRTRVLVAASVTEGVPRWRRGSGLGWVTS 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EI R+IGR+LR+V+D ALG I++D DV+QA Sbjct: 70 EYEMLPRATNTRNDRESRRGKISGRTHEISRLIGRSLRAVIDYKALGENTIVVDADVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VALHD ++ + + + + L G V+AIS G++ G P++DL Y E Sbjct: 130 DGGTRTASITGAYVALHDAVEWLRERGSL--AGEPLTGSVSAISVGIVKGVPMLDLAYDE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DST DVD N V T +G VEVQG+AE ATF + +L+LA +L LQ+ VI+ Sbjct: 188 DSTADVDMNIVATGTGDFVEVQGTAEGATFDRKLLGRLLDLADKGNRELTDLQQRVIA 245 >gi|160872895|ref|ZP_02063027.1| ribonuclease PH [Rickettsiella grylli] gi|159121694|gb|EDP47032.1| ribonuclease PH [Rickettsiella grylli] Length = 237 Score = 323 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 155/240 (64%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R I+L R + YAEGS V FG T +L TA++ VP +++ + HGWIT Sbjct: 1 MRASQRALDELRAITLIRSYTNYAEGSVWVAFGQTKVLCTASIIPGVPKFLKGSNHGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GRS EIQR+IGR LR VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRATHTRSDREASRGKQTGRSLEIQRLIGRVLRMSVDLKQLGENTIFLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D L M+ VAA+S G+ G ++DLDY Sbjct: 121 ADGGTRTAAITGASVALKDALATMK----GEMKYNPWCFLVAAVSVGIYKGQALLDLDYE 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS ++D N +MT+ G ++E+Q +AE+A FS+ +LNLA+ I +K QK+V+ Sbjct: 177 EDSHAEMDMNVIMTEQGKLLEIQATAEKAAFSKQQLNQLLNLAETGIKQCVKKQKEVLGE 236 >gi|31792536|ref|NP_855029.1| ribonuclease PH [Mycobacterium bovis AF2122/97] gi|59798839|sp|Q7U076|RNPH_MYCBO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|31618125|emb|CAD94236.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase) [Mycobacterium bovis AF2122/97] Length = 259 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR ++ GS L++FG T +L TA++ E VP W + T GW+TA Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GR+QEI R+I R+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLISRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF++ +L++A L Q+D ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240 >gi|16800270|ref|NP_470538.1| ribonuclease PH [Listeria innocua Clip11262] gi|21759406|sp|Q92CH1|RNPH_LISIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|16413660|emb|CAC96432.1| lin1201 [Listeria innocua Clip11262] Length = 248 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 164/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR++N +REI +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEEVPFTKF--PVKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238 Query: 240 NEV 242 +++ Sbjct: 239 DKI 241 >gi|298253316|ref|ZP_06977108.1| ribonuclease PH [Gardnerella vaginalis 5-1] gi|297532711|gb|EFH71597.1| ribonuclease PH [Gardnerella vaginalis 5-1] Length = 247 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 105/229 (45%), Positives = 151/229 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +++R + +TR+ + EGS L++ G+T ++ TAT VP W R++ GW+T Sbjct: 8 IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ A+G QI IDCDV+Q Sbjct: 68 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D L E + + V+K ++A+S G++ G P++DL Y Sbjct: 128 ADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYV 187 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS D N MT SG +E+QG+AE F++D +L+LA + Sbjct: 188 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKGNHE 236 >gi|257866170|ref|ZP_05645823.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30] gi|257872500|ref|ZP_05652153.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10] gi|257800104|gb|EEV29156.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30] gi|257806664|gb|EEV35486.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10] Length = 450 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E +R + + V K+ EGS ++ FGDT ++ +AT+E++VP ++R+T GW+T Sbjct: 1 MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDV+Q Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + + +K +K H+AAIS G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ VD N VMT+SG VE+QG+ E ATF ML K I +LI QK+ + Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237 >gi|319637683|ref|ZP_07992449.1| ribonuclease PH [Neisseria mucosa C102] gi|317400838|gb|EFV81493.1| ribonuclease PH [Neisseria mucosa C102] Length = 242 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 116/237 (48%), Positives = 168/237 (70%), Gaps = 2/237 (0%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR + +R I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEYG Sbjct: 8 GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 67 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGG Sbjct: 68 MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 128 TRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 185 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ QK + + Sbjct: 186 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQKAALLSR 242 >gi|73748973|ref|YP_308212.1| ribonuclease PH [Dehalococcoides sp. CBDB1] gi|147669740|ref|YP_001214558.1| ribonuclease PH [Dehalococcoides sp. BAV1] gi|289432969|ref|YP_003462842.1| ribonuclease PH [Dehalococcoides sp. GT] gi|123619918|sp|Q3ZYH8|RNPH_DEHSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043760|sp|A5FQ49|RNPH_DEHSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|73660689|emb|CAI83296.1| ribonuclease PH [Dehalococcoides sp. CBDB1] gi|146270688|gb|ABQ17680.1| RNAse PH [Dehalococcoides sp. BAV1] gi|288946689|gb|ADC74386.1| ribonuclease PH [Dehalococcoides sp. GT] Length = 241 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 107/234 (45%), Positives = 151/234 (64%), Gaps = 2/234 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R I++T +AEGS L++ G T ++ + ++E++VP ++RN+ GW+TA Sbjct: 3 RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDRVPQFLRNSGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R +R++ +G+ GRSQEIQR+IGR+LRS VD++ALG R I+DCDVIQA Sbjct: 63 EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDMAALGERSFIVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITG+++AL+ + M D VAA+S + G ++D Y E Sbjct: 123 DAGTRTASITGSYIALYLAFKKMVDMG--ILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D +VD N VM D G VE+QG+AE FS+D +L L + I L +QK Sbjct: 181 DFQAEVDFNLVMNDRGEFVEIQGTAEGKAFSRDTLDQVLKLGEAGIRQLFDIQK 234 >gi|325499450|gb|EGC97309.1| ribonuclease PH [Escherichia fergusonii ECD227] Length = 228 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 120/230 (52%), Positives = 159/230 (69%), Gaps = 2/230 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWITAEYGMLPRST Sbjct: 1 MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+QGGR+ EIQR+I RALR+ VDL ALG I +DCDV+QADGGTRTA+I Sbjct: 61 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TGA VAL D L + + N + +KG VAA+S G++ G + DL+Y EDS + D N Sbjct: 121 TGACVALADALNKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 VMT+ G I+EVQG+AE F+ + +L LA+ I ++ QK ++N Sbjct: 179 VVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 228 >gi|146328830|ref|YP_001209573.1| ribonuclease PH [Dichelobacter nodosus VCS1703A] gi|166228278|sp|A5EV74|RNPH_DICNV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|146232300|gb|ABQ13278.1| ribonuclease PH [Dichelobacter nodosus VCS1703A] Length = 238 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +QMRE+ + R V+ +AEGS L+ G T +L TA++EE+VP ++R GW+T Sbjct: 1 MRPHHRLPDQMRELHIERAVNCHAEGSALITLGRTQVLCTASIEERVPPFLRGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDLSALG R I +DCDV+Q Sbjct: 61 AEYGMLPRATHERSTREAARGKQQGRTQEIQRLIGRSLRAVVDLSALGERSITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+G ++AL D ++ + + L+G +AA+S G G ++DL+Y Sbjct: 121 ADGGTRTAAISGGFIALADAIRVLMQQGRL--KANPLRGQLAAVSVGFYQGEALLDLEYC 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D N VM D+G ++E+QG+AE FS+ A+L+LA+ I++++ Q+ V+ Sbjct: 179 EDSAAETDMNIVMNDAGALIEIQGTAEGRAFSRQEMNALLDLAEKGISEIMAEQRRVLG 237 >gi|310643658|ref|YP_003948416.1| ribonuclease ph:ham1-like protein [Paenibacillus polymyxa SC2] gi|309248608|gb|ADO58175.1| Ribonuclease PH:Ham1-like protein [Paenibacillus polymyxa SC2] Length = 253 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 158/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR +++R + LT V+KYAEGS ++ G+T ++ TAT+EE+VP +++ GW+TA Sbjct: 3 RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQA Sbjct: 63 EYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT +ITG++VAL + + + +A++S G++ ++DL+Y E Sbjct: 123 DGGTRTTSITGSFVALAIAVNKIAIQHKLPVF--PITDFLASVSVGVVGDKALLDLNYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS VD N VMT SG VE+QG+ E + F + +L+L + I +I+ QK+V+ Sbjct: 181 DSKAKVDMNLVMTGSGKYVELQGTGEESPFDRQELDQLLSLGEQGILQMIERQKEVLG 238 >gi|315302796|ref|ZP_07873561.1| ribonuclease PH [Listeria ivanovii FSL F6-596] gi|313628833|gb|EFR97201.1| ribonuclease PH [Listeria ivanovii FSL F6-596] Length = 248 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 113/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + ++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLD--AEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K IA+LI++QK+ + Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLG 238 Query: 240 NEV 242 +V Sbjct: 239 EKV 241 >gi|22124017|ref|NP_667440.1| ribonuclease PH [Yersinia pestis KIM 10] gi|45439910|ref|NP_991449.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001] gi|51594399|ref|YP_068590.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953] gi|108809489|ref|YP_653405.1| ribonuclease PH [Yersinia pestis Antiqua] gi|108813966|ref|YP_649733.1| ribonuclease PH [Yersinia pestis Nepal516] gi|145601101|ref|YP_001165177.1| ribonuclease PH [Yersinia pestis Pestoides F] gi|150260892|ref|ZP_01917620.1| ribonuclease PH [Yersinia pestis CA88-4125] gi|153946899|ref|YP_001399057.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758] gi|162421592|ref|YP_001604689.1| ribonuclease PH [Yersinia pestis Angola] gi|165926075|ref|ZP_02221907.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016] gi|165936276|ref|ZP_02224845.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275] gi|166011471|ref|ZP_02232369.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001] gi|166213648|ref|ZP_02239683.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004] gi|167402127|ref|ZP_02307604.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419312|ref|ZP_02311065.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426642|ref|ZP_02318395.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468220|ref|ZP_02332924.1| ribonuclease PH [Yersinia pestis FV-1] gi|170026367|ref|YP_001722872.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII] gi|186893387|ref|YP_001870499.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+] gi|218927265|ref|YP_002345140.1| ribonuclease PH [Yersinia pestis CO92] gi|229836156|ref|ZP_04456324.1| ribonuclease PH [Yersinia pestis Pestoides A] gi|229839893|ref|ZP_04460052.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841975|ref|ZP_04462130.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195] gi|229904496|ref|ZP_04519607.1| ribonuclease PH [Yersinia pestis Nepal516] gi|270488496|ref|ZP_06205570.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27] gi|294502151|ref|YP_003566213.1| ribonuclease PH [Yersinia pestis Z176003] gi|21759404|sp|Q8ZJP8|RNPH_YERPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61215882|sp|Q66GE1|RNPH_YERPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|122382629|sp|Q1C262|RNPH_YERPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|122384026|sp|Q1CCZ7|RNPH_YERPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228325|sp|A4TSE2|RNPH_YERPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166991087|sp|A7FCS9|RNPH_YERP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736955|sp|B2JYM8|RNPH_YERPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736956|sp|A9R668|RNPH_YERPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736957|sp|B1JQX8|RNPH_YERPY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|21956760|gb|AAM83691.1|AE013610_3 RNase PH [Yersinia pestis KIM 10] gi|45434765|gb|AAS60326.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001] gi|51587681|emb|CAH19281.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953] gi|108777614|gb|ABG20133.1| RNAse PH [Yersinia pestis Nepal516] gi|108781402|gb|ABG15460.1| RNAse PH [Yersinia pestis Antiqua] gi|115345876|emb|CAL18734.1| ribonuclease PH [Yersinia pestis CO92] gi|145212797|gb|ABP42204.1| RNAse PH [Yersinia pestis Pestoides F] gi|149290300|gb|EDM40377.1| ribonuclease PH [Yersinia pestis CA88-4125] gi|152958394|gb|ABS45855.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758] gi|162354407|gb|ABX88355.1| ribonuclease PH [Yersinia pestis Angola] gi|165915890|gb|EDR34498.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275] gi|165921935|gb|EDR39112.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016] gi|165989617|gb|EDR41918.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001] gi|166205050|gb|EDR49530.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004] gi|166963306|gb|EDR59327.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048502|gb|EDR59910.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054331|gb|EDR64148.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752901|gb|ACA70419.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII] gi|186696413|gb|ACC87042.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+] gi|229678614|gb|EEO74719.1| ribonuclease PH [Yersinia pestis Nepal516] gi|229690285|gb|EEO82339.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195] gi|229696259|gb|EEO86306.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706604|gb|EEO92610.1| ribonuclease PH [Yersinia pestis Pestoides A] gi|262360230|gb|ACY56951.1| ribonuclease PH [Yersinia pestis D106004] gi|262364176|gb|ACY60733.1| ribonuclease PH [Yersinia pestis D182038] gi|270337000|gb|EFA47777.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27] gi|294352610|gb|ADE62951.1| ribonuclease PH [Yersinia pestis Z176003] gi|320013398|gb|ADV96969.1| ribonuclease PH [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 238 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L+LA+ I + + QK + + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQKAALES 238 >gi|299535538|ref|ZP_07048859.1| ribonuclease PH [Lysinibacillus fusiformis ZC1] gi|298728738|gb|EFI69292.1| ribonuclease PH [Lysinibacillus fusiformis ZC1] Length = 249 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 109/240 (45%), Positives = 151/240 (62%), Gaps = 3/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R + + + EGS L++ G+T ++ TAT+E+KVP ++R GWITA Sbjct: 3 RFDGRNADGLRPVKIDSEYLLHPEGSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQA Sbjct: 63 EYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYG 180 DGGTRTA+ITGA+VA+ + + K + +AA S G++ I+DL+Y Sbjct: 123 DGGTRTASITGAFVAMTQAIAKFAE--EKPFEKFPVTDFLAATSVGIVEEQGAILDLNYV 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED VD N VMT +G VE+QG+ E ATFS++ +L L + I L++LQK + Sbjct: 181 EDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQLVELQKITLGE 240 >gi|157826032|ref|YP_001493752.1| ribonuclease PH [Rickettsia akari str. Hartford] gi|166228310|sp|A8GPB9|RNPH_RICAH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157799990|gb|ABV75244.1| ribonuclease PH [Rickettsia akari str. Hartford] Length = 239 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 127/238 (53%), Positives = 168/238 (70%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL EGSC++K G+TH++ +AT E VP ++R GW+T Sbjct: 1 MRQSGRKSNQLRPISLELSPLINTEGSCIIKIGNTHVMCSATCETTVPPFLRGQNQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST R+KREA G+QGGR+QEIQR+IGR++R V+DL LG RQIIIDCDVI Sbjct: 61 AEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRSMRCVMDLKKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG++VALH ++ + + L +AA+SCG+ G I+DLDY Sbjct: 121 ADGGTRTASITGSYVALHLAIRSLMK--KRILKVNPLISQIAAVSCGIYKGEAILDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD+NFV +G+++EVQG+AE+ FS++ F ML LAK A+L KLQ V+ Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEQEPFSEEQFIEMLKLAKCGAAELFKLQNQVL 236 >gi|308070476|ref|YP_003872081.1| tRNA nucleotidyltransferase [Paenibacillus polymyxa E681] gi|305859755|gb|ADM71543.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Paenibacillus polymyxa E681] Length = 253 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 160/238 (67%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR +++R + LT V+KYAEGS ++ G+T ++ TAT+EE+VP +++ GW+TA Sbjct: 3 RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R +REA G+ GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQA Sbjct: 63 EYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT +ITG++VAL + + + + +A++S G++ ++DL+Y E Sbjct: 123 DGGTRTTSITGSFVALAIAVNKI--ATQHKLPVFPITDFLASVSVGVVGEKALLDLNYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS VD N VMT SG VE+QG+ E + F ++ +L+L + I +I+ QK+V+ Sbjct: 181 DSKAKVDMNLVMTGSGKYVELQGTGEESPFDRNELDQLLSLGEQGILQMIERQKEVLG 238 >gi|254852893|ref|ZP_05242241.1| ribonuclease PH [Listeria monocytogenes FSL R2-503] gi|254993151|ref|ZP_05275341.1| ribonuclease PH [Listeria monocytogenes FSL J2-064] gi|300764387|ref|ZP_07074381.1| ribonuclease PH [Listeria monocytogenes FSL N1-017] gi|258606228|gb|EEW18836.1| ribonuclease PH [Listeria monocytogenes FSL R2-503] gi|300515039|gb|EFK42092.1| ribonuclease PH [Listeria monocytogenes FSL N1-017] Length = 248 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIVLGKKGISELIEIQKETLG 238 Query: 240 NEV 242 ++V Sbjct: 239 DKV 241 >gi|57233914|ref|YP_182001.1| ribonuclease PH [Dehalococcoides ethenogenes 195] gi|123618391|sp|Q3Z6Z8|RNPH_DEHE1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|57224362|gb|AAW39419.1| ribonuclease PH [Dehalococcoides ethenogenes 195] Length = 239 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 110/233 (47%), Positives = 150/233 (64%), Gaps = 2/233 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R I++T +AEGS L++ G T ++ + ++E+KVP ++RN+ GW+TA Sbjct: 3 RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R +R++ +G+ GRSQEIQR+IGR+LRS VDL+ALG R IIDCDVIQA Sbjct: 63 EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLAALGERSFIIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGA++AL+ + M D VAA+S + G ++D Y E Sbjct: 123 DAGTRTASITGAYIALYLAFKKMVDMG--ILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D +VD N VM D VE+QG+AE TFS+D +L L + I L +Q Sbjct: 181 DFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGEAGIWQLFDIQ 233 >gi|254421303|ref|ZP_05035021.1| ribonuclease PH [Synechococcus sp. PCC 7335] gi|196188792|gb|EDX83756.1| ribonuclease PH [Synechococcus sp. PCC 7335] Length = 241 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 104/241 (43%), Positives = 155/241 (64%), Gaps = 4/241 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R RQ +Q+R R+ ++Y+ GS L G+T +L TA++ E VP +++++ GW+TA Sbjct: 5 RPDQRQPDQLRPFKFERQFTQYSAGSVLAHCGNTRVLCTASVLEGVPRFLKDSGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE + + GR+QEIQR+IGR+LR+ +D+ ALG R I ID DV+QA Sbjct: 65 EYRMLPGSTQTRKSREFM--KLSGRTQEIQRLIGRSLRAALDMEALGERTITIDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT +ITGA+VAL D + H+ + + L+ +AA S G++ G P +DL+Y E Sbjct: 123 DGGTRTTSITGAYVALEDAIAHLIKTNEL--TTSPLRHQIAATSVGLIEGDPFLDLNYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D D+D N VM + +EVQG+AE +F++ AML A+ I+ L+++QK +S Sbjct: 181 DFAADIDFNVVMNEKLEFIEVQGTAEAGSFTRSQLNAMLEYAEKGISQLMQIQKATLSES 240 Query: 242 V 242 + Sbjct: 241 L 241 >gi|139438503|ref|ZP_01772019.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC 25986] gi|133776042|gb|EBA39862.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC 25986] Length = 241 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 124/238 (52%), Positives = 166/238 (69%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR N++R + LTR V K+A GSCL +FGDT +L AT+EE VP W + K GW+TA Sbjct: 8 RANGRAANELRPVKLTRGVMKHAHGSCLAEFGDTRVLCAATIEEGVPGWRKGAKAGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP STG R KRE + + GRS EI+R+IGR+LR+VV++ ALG + +DCDVIQA Sbjct: 68 EYAMLPASTGKRCKREYANRK--GRSMEIERLIGRSLRTVVNMKALGEYTVTVDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVALHD L + ++ L G VAAIS G++ G ++DLDY E Sbjct: 126 DGGTRTASITGAWVALHDALAMWVEAGKIERI--PLTGQVAAISMGVVDGNTMLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G I+E+QG+ E+A F + A+L+L IA+LI+LQ+ ++ Sbjct: 184 DSHAEVDMNLVATDTGEIIELQGTGEQAPFDRKRLNALLDLGDKGIAELIELQRQALA 241 >gi|269128062|ref|YP_003301432.1| ribonuclease PH [Thermomonospora curvata DSM 43183] gi|268313020|gb|ACY99394.1| ribonuclease PH [Thermomonospora curvata DSM 43183] Length = 239 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 153/238 (64%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R +Q+R + + R +AEGS L++FG T +L A++++ VP W R++ GW+TA Sbjct: 3 RPDDRAPDQLRPVRIQRNWLDHAEGSVLIEFGATRVLCAASVQDSVPRWRRDSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R +RE+V GR GGR+QEI R+IGR+LR+ VD LG +++DCDV+QA Sbjct: 63 EYAMLPRATHTRGERESVKGRLGGRTQEISRLIGRSLRACVDFKELGENTVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + M + + L VAA+S G++ G P +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAWMRE--RELIKGDPLICSVAAVSVGVVDGEPRLDLCYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N V T G VEVQG+AE F + A+L+LA A+L +LQ++ ++ Sbjct: 181 DVEAGTDMNVVCTGDGKFVEVQGTAEGQPFDRAELDALLDLAAGGCAELTRLQQEALN 238 >gi|123440458|ref|YP_001004452.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166228324|sp|A1JHW7|RNPH_YERE8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|122087419|emb|CAL10200.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 238 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 118/240 (49%), Positives = 159/240 (66%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I + + QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETIFQAQKAALEQ 238 >gi|325570405|ref|ZP_08146182.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC 12755] gi|325156615|gb|EGC68792.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC 12755] Length = 450 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E +R +++ V K+ EGS ++ FGDT ++ +AT+E++VP ++R+T GWIT Sbjct: 1 MRHDGRKETMLRPVNIQTNVYKHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDV+Q Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + + +K +K H+AAIS G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS+ VD N VMT+SG VE+QG+ E ATF ML K I +LI QK+ + Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237 >gi|256824846|ref|YP_003148806.1| RNAse PH [Kytococcus sedentarius DSM 20547] gi|256688239|gb|ACV06041.1| RNAse PH [Kytococcus sedentarius DSM 20547] Length = 288 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 111/226 (49%), Positives = 151/226 (66%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R++ +TR +A GS L++FG T +L A+ + VP W++ GW+T Sbjct: 23 RHDGRAPDQLRDVRITRGWLDHAAGSVLIEFGRTRVLCAASFQPGVPRWLKGQGTGWVTG 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GR+QEI R++GRALR+ VD SALG I+IDCDV+QA Sbjct: 83 EYAMLPAATHTRSDRESVKGKVKGRTQEISRLLGRALRAAVDTSALGENTIVIDCDVLQA 142 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGAWVAL D + + + +QVL+ + AIS G++ G P++DLDY E Sbjct: 143 DGGTRTAAITGAWVALADAVAAGKASGDIPANAQVLRDSIQAISVGIVDGQPVLDLDYPE 202 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 DS D N VMT +G +VEVQG+AE TF + A+L+LA+D Sbjct: 203 DSGAGADMNVVMTGAGELVEVQGTAEGQTFDRAMLNALLDLAQDGC 248 >gi|297242886|ref|ZP_06926824.1| ribonuclease PH [Gardnerella vaginalis AMD] gi|296889097|gb|EFH27831.1| ribonuclease PH [Gardnerella vaginalis AMD] Length = 253 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 105/229 (45%), Positives = 151/229 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +++R + +TR+ + EGS L++ G+T ++ TAT VP W R++ GW+T Sbjct: 14 IRVDGRNVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ A+G QI IDCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D L E + + V+K ++A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVIKDSISAVSVGVINGTPMLDLPYV 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS D N MT SG +E+QG+AE F++D +L+LA + Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKGNRE 242 >gi|296314065|ref|ZP_06864006.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768] gi|296839317|gb|EFH23255.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768] Length = 241 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 114/234 (48%), Positives = 166/234 (70%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM Sbjct: 9 RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILTENPIREAVAAVSAGVVNGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ QK ++ Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIRELVRYQKAALN 240 >gi|313638210|gb|EFS03458.1| ribonuclease PH [Listeria seeligeri FSL S4-171] Length = 248 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 114/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + ++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLD--AEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K IA+LI++QK+ + Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLG 238 Query: 240 NEV 242 EV Sbjct: 239 EEV 241 >gi|317050112|ref|YP_004117760.1| ribonuclease PH [Pantoea sp. At-9b] gi|316951729|gb|ADU71204.1| ribonuclease PH [Pantoea sp. At-9b] Length = 238 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR NQ+R ++LTR +K+AEGS LV+FG+T +L TAT++E VP +++ GW+T Sbjct: 1 MRPAGRHTNQVRPVTLTRHYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL ALG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLQALGEYTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + ++ S LKG VAAIS G++ G DL+Y Sbjct: 121 ADGGTRTASITGACVALADALNKL--VADGKLKSSPLKGMVAAISVGIVEGEARCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I LI QK +++ Sbjct: 179 EDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLELLALARGGIEQLIVAQKAALAD 238 >gi|154486637|ref|ZP_02028044.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis L2-32] gi|154084500|gb|EDN83545.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis L2-32] Length = 254 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 105/229 (45%), Positives = 152/229 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 14 VRADGRKVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q Sbjct: 74 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D + E+ + +VLK V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVALVDAMHWAEEHKHVKSADRVLKDWVSAVSVGVINGKPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS D N MT SG +E+QG+AE F++ +L+LA+ + Sbjct: 194 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNRE 242 >gi|283782839|ref|YP_003373593.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05] gi|283441100|gb|ADB13566.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05] Length = 253 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 105/229 (45%), Positives = 151/229 (65%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +++R + +TR+ + EGS L++ G+T ++ TAT VP W R++ GW+T Sbjct: 14 IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR LR VVD+ A+G QI IDCDV+Q Sbjct: 74 AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA++TGA+VAL D L E + + V+K ++A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYV 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS D N MT SG +E+QG+AE F++D +L+LA + Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKGNRE 242 >gi|86609199|ref|YP_477961.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502063|sp|Q2JKT3|RNPH_SYNJB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|86557741|gb|ABD02698.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)] Length = 244 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 154/239 (64%), Gaps = 3/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R Q+R +S R ++YA GS LVKFG TH+L TA++ E+VP +++NT GW+TA Sbjct: 5 RPDNRTAAQLRPVSFERHFTRYAPGSVLVKFGHTHVLCTASVAEEVPPFLQNTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+ EIQR+IGR+LR+ +D LGSR I +D DV+QA Sbjct: 65 EYRMLPGATQQRQPREML--KLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITG +VALHD + + L+ VAA+S G++ G +VDL Y Sbjct: 123 DGGTRTAAITGGYVALHDAITWLYKQGALDPAQGSPLRQQVAALSVGIVQGEVLVDLCYE 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VM + G +E+QG+AE A FS+ ML +A+ I +L++ Q+ ++ Sbjct: 183 EDSQAEVDMNIVMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQELLQAQRQALN 241 >gi|172039437|ref|YP_001805938.1| ribonuclease PH [Cyanothece sp. ATCC 51142] gi|254808585|sp|B1WUL8|RNPH_CYAA5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|171700891|gb|ACB53872.1| ribonuclease PH [Cyanothece sp. ATCC 51142] Length = 240 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 106/239 (44%), Positives = 153/239 (64%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ NQ+R ++ ++++ GS L + G+T +L TA++EE VP ++ + GW+TA Sbjct: 5 RPDGRQPNQLRPVNFELNFTRFSAGSVLAQCGETKVLCTASIEEYVPRFLLGSGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LRS +DL LG R I IDCDV+QA Sbjct: 65 EYRMLPSATQERQRRELL--KLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG +VAL L + Q L+ VAAIS G++ G +DL+Y E Sbjct: 123 DAGTRTTSITGGYVALALALNKLIKKGELIQ--SPLRFPVAAISVGLIEGEAFLDLNYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D+D N VMT + ++EVQG+AE +F++ +L+LA+ I +L+ LQ +S Sbjct: 181 DSKADIDFNVVMTGNLDLIEVQGTAEENSFTRSQLNDILDLAELGIKELVSLQNQALSQ 239 >gi|15615630|ref|NP_243934.1| ribonuclease PH [Bacillus halodurans C-125] gi|21759418|sp|Q9K8D8|RNPH_BACHD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|10175690|dbj|BAB06787.1| ribonuclease PH [Bacillus halodurans C-125] Length = 257 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 107/240 (44%), Positives = 152/240 (63%), Gaps = 3/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ R+ +++R IS+ + EGS L+ G+T ++ TA+LE++VP ++R GWIT Sbjct: 1 MRMDERKADELRPISIEINYLHHPEGSVLISIGNTKVICTASLEDRVPPFLRGQGKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALRS++DL +G R + IDCDVIQ Sbjct: 61 AEYSMLPRATEQRNMRESTRGKVSGRTMEIQRLIGRALRSIIDLDKIGERTVWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179 ADGGTRT +ITGA+VAL ++ +N + +AA+S G+ I+DL Y Sbjct: 121 ADGGTRTTSITGAFVALSLAMEK--ALANGAIQEWPIDDFLAAVSVGIDPKLGAILDLCY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ +VD N VMT G VE+QG+ E ATFS + +L LA I LI+ Q++ + Sbjct: 179 AEDAQAEVDMNVVMTGKGEYVELQGTGEEATFSHNQLLTILALADKGIKQLIEEQRNALG 238 >gi|298369114|ref|ZP_06980432.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str. F0314] gi|298283117|gb|EFI24604.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str. F0314] Length = 246 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 117/234 (50%), Positives = 170/234 (72%), Gaps = 2/234 (0%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEYG Sbjct: 8 GRAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASVDENVPPFLRGKEQGWVTAEYG 67 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLP ST R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGG Sbjct: 68 MLPASTATRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTA+ITGA+VAL ++ + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 128 TRTASITGAFVALQIAVEKL--LSDGLIGENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 185 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N VMT SG I+E+QG+AE A FS D ++ LA+ IA+L++ Q++ + Sbjct: 186 CDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELVRHQQNAL 239 >gi|238918030|ref|YP_002931544.1| ribonuclease PH, [Edwardsiella ictaluri 93-146] gi|259494120|sp|C5B9C9|RNPH_EDWI9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|238867598|gb|ACR67309.1| ribonuclease PH, putative [Edwardsiella ictaluri 93-146] Length = 238 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 160/240 (66%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR Q+R + LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T Sbjct: 1 MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + LKG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALGALVAAGKL--KESPLKGMVAAVSVGIVAGGAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+D I +I+ QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQKTALEQ 238 >gi|254520650|ref|ZP_05132706.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA] gi|226914399|gb|EEH99600.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA] Length = 248 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ Q+R +TR +KYAEGS L++ GDT ++ TA++E+KVP +++ GWIT Sbjct: 1 MRIDGRKNEQVRIAKITRGYTKYAEGSVLIEVGDTKVICTASIEDKVPPFLKGQGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRSTG R R+ + GR+ EIQR+IGRALRSV+DL ALG + I IDCDVIQ Sbjct: 61 AEYNMLPRSTGTRKVRDIARLKVDGRTMEIQRLIGRALRSVMDLKALGEKTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +ITGA+VAL D + + K ++ V+A S G+L I+DL Y Sbjct: 121 ADGGTRTTSITGAFVALVDAVNKLHK--EKPFEVYPIRKFVSATSVGILNDEKILDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N + TD G +E+QG+ E + FS+D +L+LA+ I ++++QKD + Sbjct: 179 EDSNAKVDMNVIATDEGEFIEIQGTGEESPFSRDDLNDLLDLAQKGIKQMVQIQKDALK 237 >gi|258592582|emb|CBE68891.1| RNase PH [NC10 bacterium 'Dutch sediment'] Length = 258 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 116/242 (47%), Positives = 165/242 (68%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + + R ++AEGS L++ G+T +L TAT+EEKVP ++R T GW+T Sbjct: 14 VRSDGRKIDEIRPVKVDRGYLRHAEGSLLIEVGETRVLCTATVEEKVPPFLRATGQGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R RE+ +GR GR+ EIQR+IGR+LR+V+DL+ LG R ++IDCDVIQ Sbjct: 74 AEYGMLPRATKTRTPRESATGRASGRTFEIQRLIGRSLRAVIDLTRLGERTVLIDCDVIQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT AITGA+VA+ D L +++ +LK VA IS G + G ++DL+Y Sbjct: 134 ADGGTRTTAITGAFVAMADALSRLQENGQL--KGPLLKDFVAGISIGYVDGELLLDLNYA 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DVD N VMT + VEVQG+AE + + ML+LA I L+ LQ+ ++ Sbjct: 192 EDSMADVDMNVVMTGARKFVEVQGTAEEVPYDKAQLDRMLDLATRGIDQLVDLQRQLLGT 251 Query: 241 EV 242 ++ Sbjct: 252 DI 253 >gi|288921256|ref|ZP_06415540.1| ribonuclease PH [Frankia sp. EUN1f] gi|288347346|gb|EFC81639.1| ribonuclease PH [Frankia sp. EUN1f] Length = 256 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 109/241 (45%), Positives = 151/241 (62%), Gaps = 7/241 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+ +Q+R+I++ R ++AEGS L+ G T +L A++ E VP W + + GW+T Sbjct: 2 IRVDGRKTDQLRDITIVRGWQEHAEGSALISAGLTRVLCAASVTEGVPRWRKGSGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I IDCDV+ Sbjct: 62 AEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLL 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + V A+S G++ G P++DL Y Sbjct: 122 ADGGTRTAAITGAYVALADACRWLGR-------PSAIVTSVCAVSVGIVKGVPMLDLAYT 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST D D N V T +G VEVQG+AE F + +LNLA L ++Q ++ Sbjct: 175 EDSTADTDMNVVCTGTGGFVEVQGTAEGTPFDRAALDELLNLATAGCNRLTEIQNAALAQ 234 Query: 241 E 241 Sbjct: 235 P 235 >gi|237745873|ref|ZP_04576353.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS] gi|229377224|gb|EEO27315.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS] Length = 248 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR + MR I R +KYAEGS L FGDT ++ TA++EE VP ++R GW+T Sbjct: 9 IRSNGRPLDAMRSIEFIRNYTKYAEGSVLTVFGDTQVICTASIEESVPPFLRGRGRGWLT 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA GRQ GR+QEIQR+IGR++R+ DL+A G R + +DCDVIQ Sbjct: 69 AEYGMLPRSTHTRMEREAARGRQSGRTQEIQRLIGRSIRAAFDLNAFGERTLRLDCDVIQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +A +D M + L+ VAAIS G++ G P++DLDY Sbjct: 129 ADGGTRTASISGVMIAAYDAFSLMVE--EGLIEKVPLRHFVAAISVGVIQGVPMLDLDYQ 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ D D N VMT++G VE+QG+AE FS ML +A+ I +LI +QK V+ Sbjct: 187 EDSSCDTDMNVVMTEAGDFVEIQGTAEGGAFSHSLLNEMLGMAQQGIGELIHMQKRVLG 245 >gi|325068398|ref|ZP_08127071.1| ribonuclease PH [Actinomyces oris K20] Length = 268 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 106/242 (43%), Positives = 146/242 (60%), Gaps = 2/242 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D++ALG I +DCDV+QA Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTAAITGA+VAL D + VL ++AIS G++ G P +DL Y Sbjct: 128 DGGTRTAAITGAYVALADAVAWGTQRGLIKARPGRPVLSDSLSAISVGIIDGVPCLDLPY 187 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D N V T G +EVQG+AE A F + +L+LA + L LQ+ ++ Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALA 247 Query: 240 NE 241 Sbjct: 248 GP 249 >gi|326773720|ref|ZP_08233003.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505] gi|326636950|gb|EGE37853.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505] Length = 268 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 106/242 (43%), Positives = 146/242 (60%), Gaps = 2/242 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D++ALG I +DCDV+QA Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTAAITGA+VAL D + VL ++AIS G++ G P +DL Y Sbjct: 128 DGGTRTAAITGAYVALTDAVAWGTQRGLIKARPGKPVLSDSLSAISVGIIDGVPCLDLPY 187 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D N V T G +EVQG+AE A F + +L+LA + L LQ+ ++ Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALA 247 Query: 240 NE 241 Sbjct: 248 GP 249 >gi|257466146|ref|ZP_05630457.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563] gi|315917304|ref|ZP_07913544.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563] gi|313691179|gb|EFS28014.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563] Length = 249 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 114/240 (47%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ENQ+REI +TR + +AEGS L++ G+T ++ TA++ EKVP +I+NT GW+TA Sbjct: 3 RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+TG R +REA G+ GR+ EIQR+IGRALRS +DL LG R I +DCDVIQA Sbjct: 63 EYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ + + VAA+S G G +DL+Y E Sbjct: 123 DGGTRTASITGAFVAMAIAAAKL--LREGTITESPVLSSVAAVSVGKCEGNIFLDLNYVE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS+ +VD N + D G +EVQG+ E ATF + A+L++A+ I L++ Q++V+ + Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQREVLGED 240 >gi|288573194|ref|ZP_06391551.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568935|gb|EFC90492.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002] Length = 257 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 118/238 (49%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR MR++S R S YAEGSCLV FG T +L TA++EEKVP ++R + GW+TA Sbjct: 10 RADGRSGYDMRKVSFQRGFSCYAEGSCLVSFGKTKVLCTASVEEKVPPFLRGSDRGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LPRST RV R+ G+ GRS EIQR++GR+LR+ VD+ +LG R I IDCDV+QA Sbjct: 70 EYSLLPRSTSTRVPRDISRGKLNGRSSEIQRLVGRSLRAAVDMESLGERTIWIDCDVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR+AA+TG +VAL D L+H+ S L+ +VAA+S G + G + DL Y E Sbjct: 130 DGGTRSAAVTGGFVALVDALRHLWRIGKL--KSIPLRSYVAAVSVGKISGKLLTDLCYDE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N VM G ++E+QG+ E+ TFS+D ML+LA + +LI LQ+ + Sbjct: 188 DSRAEVDMNVVMDGLGRLIEIQGTGEKDTFSRDEMNGMLDLAFRSVEELIVLQERALE 245 >gi|310778905|ref|YP_003967238.1| ribonuclease PH [Ilyobacter polytropus DSM 2926] gi|309748228|gb|ADO82890.1| ribonuclease PH [Ilyobacter polytropus DSM 2926] Length = 245 Score = 322 bits (825), Expect = 3e-86, Method: Composition-based stats. Identities = 106/240 (44%), Positives = 158/240 (65%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R+ +Q+R+I + + YAEGS L++ G+T ++ TA++ ++VP ++RN GW+T Sbjct: 5 LRDDNRKLDQIRDIKIKPNFTIYAEGSVLIEMGNTKVICTASISDRVPPFLRNQGRGWLT 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R REAV G+ GR+ EIQR+IGR+LR+ +DL +G + I +DCDVIQ Sbjct: 65 AEYSMLPRATEDRNMREAVKGKLSGRTMEIQRLIGRSLRACIDLEKIGEKTITVDCDVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG + + L + L +VAAIS G++ G P++DL Y Sbjct: 125 ADGGTRTASITGGY--MALALAVKKLLKKDKLKENPLIANVAAISAGIVGGQPMLDLKYT 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST +VD N +M G VEVQG+ E AT+++ ML+LA+ I +L++LQ ++ Sbjct: 183 EDSTAEVDMNVIMNSKGEFVEVQGTGEEATYTRRELNEMLDLAEKGIMELVELQNKIVEE 242 >gi|289434487|ref|YP_003464359.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170731|emb|CBH27271.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 248 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 114/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVENKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + ++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLD--AEVPFTKFPVKDLLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K IA+LI++QK+ + Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLG 238 Query: 240 NEV 242 EV Sbjct: 239 EEV 241 >gi|269137419|ref|YP_003294119.1| RNase PH [Edwardsiella tarda EIB202] gi|267983079|gb|ACY82908.1| RNase PH [Edwardsiella tarda EIB202] gi|304557493|gb|ADM40157.1| Ribonuclease PH [Edwardsiella tarda FL6-60] Length = 238 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 159/240 (66%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR Q+R + LTR +K+AEGS LV+FGDT +L TA+++E VP +++ GW+T Sbjct: 1 MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R+ REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDVIQ Sbjct: 61 AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA VAL D L + LKG VAA+S G++ + DL+Y Sbjct: 121 ADGGTRTASITGACVALADALGALVAAGKL--KESPLKGMVAAVSVGIVADEAVCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+D I +I+ QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQKTALEQ 238 >gi|227495770|ref|ZP_03926081.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434] gi|226834699|gb|EEH67082.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434] Length = 263 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 2/242 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TRR ++ EGS LV+FG T +L A+ E VP W + + GW+TA Sbjct: 9 RKDGRATDELRPVTITRRWQEHGEGSVLVEFGRTRVLCVASFTEGVPRWRKGSGEGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R RE+V G+ GGR+ EI R+IGRALR VVD++ALG I +DCDV+QA Sbjct: 69 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRALRGVVDVAALGENTIALDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTA++TGA+VAL D + + + V+ ++AIS G++ G P +DL Y Sbjct: 129 DGGTRTASVTGAYVALADAVAWGTERGLISPRAGKPVIADSLSAISVGIIDGVPCLDLPY 188 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D N V T +G +EVQG+AE A F++D A+L+LA +L +LQK V++ Sbjct: 189 EEDVRAHTDMNVVQTGAGKFIEVQGTAEHAPFNRDELCALLDLATKGNGELAELQKAVLA 248 Query: 240 NE 241 Sbjct: 249 GP 250 >gi|238789552|ref|ZP_04633336.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641] gi|238722305|gb|EEQ13961.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641] Length = 238 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 118/240 (49%), Positives = 161/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L+LA+ I + + QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQKAALEQ 238 >gi|257452055|ref|ZP_05617354.1| ribonuclease PH [Fusobacterium sp. 3_1_5R] gi|317058603|ref|ZP_07923088.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R] gi|313684279|gb|EFS21114.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R] Length = 249 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 113/240 (47%), Positives = 161/240 (67%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ENQ+REI +TR + +AEGS L++ G+T ++ TA++ EKVP +I+NT GW+TA Sbjct: 3 RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+PR+TG R +REA G+ GR+ EIQR+IGRALRS +DL LG R I +DCDVIQA Sbjct: 63 EYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA+ + + VAA+S G G +DL+Y E Sbjct: 123 DGGTRTASITGAFVAMAIAAAKL--LREGTITDSPVLSSVAAVSVGKCEGNIFLDLNYVE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS+ +VD N + D G +EVQG+ E ATF + +L++A+ I L++ Q++V+ + Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNTLLDMAEIGIHQLLEKQREVLGED 240 >gi|225351161|ref|ZP_03742184.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158617|gb|EEG71859.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 253 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 106/229 (46%), Positives = 153/229 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS LV+ G+T ++ TAT VP W +++ GW+T Sbjct: 13 IRTDGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVT 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q Sbjct: 73 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 132 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ E + +V+K V+A+S G++ G P++DL Y Sbjct: 133 ADGGTRTASITGAYVALVDAMRWAEKHKHIRSAERVIKDSVSAVSVGVIDGTPMLDLPYI 192 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS D N MT SG +E+QG+AE F++ A+L+LA+ + Sbjct: 193 EDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNALLDLAEKGNKE 241 >gi|86607255|ref|YP_476018.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab] gi|123504955|sp|Q2JRJ9|RNPH_SYNJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|86555797|gb|ABD00755.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab] Length = 242 Score = 321 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 156/239 (65%), Gaps = 3/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR Q+R IS R ++YA GS LVKFGDTH+L TA++ E+VP +++NT GW+TA Sbjct: 5 RPDGRTAAQLRPISFQRHFTRYAPGSVLVKFGDTHVLCTASVAEEVPPFLQNTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+ EIQR+IGR+LR+ +D LGSR I +D DV+QA Sbjct: 65 EYRMLPTATQQRQPRETL--KVSGRTAEIQRLIGRSLRAALDFHKLGSRTITVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG TRTAAITG +VALHD + + L+ VAA+S G++ G +VDL Y Sbjct: 123 DGSTRTAAITGGYVALHDAITWLYKQGLLDPAQGSPLRQQVAALSVGIVRGEVLVDLCYE 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VM + G ++E+QG+AE F + ML++A+ I +L++ Q++ ++ Sbjct: 183 EDSQAEVDMNIVMNEQGALIEIQGTAEAGCFDRSQLLQMLDMAQAGIQELLRAQRETLN 241 >gi|319943444|ref|ZP_08017726.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599] gi|319743259|gb|EFV95664.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599] Length = 253 Score = 321 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 122/245 (49%), Positives = 162/245 (66%), Gaps = 7/245 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R + RR +++AEGS LV FGDT +L TA++ + VP ++R GW+TA Sbjct: 9 RHDGRALDGLRPVRFQRRFTRHAEGSVLVSFGDTRVLCTASVLDSVPPFLRGKGQGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R I +DCDV+QA Sbjct: 69 EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVTDLKRLGERTIHLDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYP---IVD 176 DGGTRTAAITGAWVAL D + + S L+ VAAIS G++ G ++D Sbjct: 129 DGGTRTAAITGAWVALRDAVNGLLAAGKL--TSDPLREAVAAISVGIVALPGAAPACVLD 186 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 LDY EDS + D N VMT SG +VE+QG+AE A FS+ +L+LA I +L++LQ+ Sbjct: 187 LDYQEDSGCETDMNVVMTASGGLVEIQGTAEGAPFSRQQASELLDLAAKGIDELVRLQRA 246 Query: 237 VISNE 241 + E Sbjct: 247 ALQEE 251 >gi|126656098|ref|ZP_01727482.1| ribonuclease PH [Cyanothece sp. CCY0110] gi|126622378|gb|EAZ93084.1| ribonuclease PH [Cyanothece sp. CCY0110] Length = 240 Score = 321 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 104/239 (43%), Positives = 158/239 (66%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ NQ+R ++ ++++ GS +++ G+T +L TA++E++VP ++ + GW+TA Sbjct: 5 RPDGRQPNQLRPVNFELNFTRFSAGSVVIECGETKVLCTASIEDRVPRFLLGSGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LRS +DL LG R I IDCDV+QA Sbjct: 65 EYRMLPSATQERQRRELL--KLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITG +VAL + + Q L+ VAAIS G++ G +DL+Y E Sbjct: 123 DAGTRTASITGGYVALGLAVNKLIKQGELIQ--SPLRFPVAAISVGLIEGEAFLDLNYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS D+D N VMT++ ++EVQG+AE +F++ +L+LA+ I +L+ LQ V++ Sbjct: 181 DSKADIDFNVVMTENLDLIEVQGTAEENSFTRSQLNDILDLAEIGIKELVSLQNKVLNE 239 >gi|313633649|gb|EFS00407.1| ribonuclease PH [Listeria seeligeri FSL N1-067] Length = 251 Score = 321 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 113/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R+I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 4 MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 64 AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + ++ + +K +AA S G+L G ++DL+Y Sbjct: 124 ADGGTRTASITGAFIAMVMAIAKLD--AEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNY 181 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N +MT SG VE+QG+ E TFS+ ++ L K IA+LI++QK+ + Sbjct: 182 IEDSAAQVDMNIIMTGSGAFVELQGTGEETTFSEAELAELIALGKKGIAELIEIQKETLG 241 Query: 240 NEV 242 EV Sbjct: 242 EEV 244 >gi|212716722|ref|ZP_03324850.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM 16992] gi|212660426|gb|EEB21001.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM 16992] Length = 254 Score = 321 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 105/229 (45%), Positives = 152/229 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TR + EGS LV+ G+T ++ TAT VP W +++ GW+T Sbjct: 14 IRADGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q Sbjct: 74 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ E + +V+K V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAEKHKHIRSADRVIKDSVSAVSVGVIDGKPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS D N MT SG +E+QG+AE F++ +L+LA+ + Sbjct: 194 EDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNTLLDLAEKGNKE 242 >gi|258616327|ref|ZP_05714097.1| ribonuclease PH/Ham1 protein [Enterococcus faecium DO] Length = 253 Score = 321 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ ++R++ L V KY EGS +++FGDT ++ +AT+E+ VP ++R T GW+T Sbjct: 1 MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+IGR+LR+VVDL LG R II+DCDVIQ Sbjct: 61 AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + K +K H+AA+S G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT+SG VE+QG+ E ATF + ML K+ I DLIK QK + Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238 Query: 240 NE 241 E Sbjct: 239 TE 240 >gi|85859450|ref|YP_461652.1| ribonuclease PH [Syntrophus aciditrophicus SB] gi|123516627|sp|Q2LTS3|RNPH_SYNAS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|85722541|gb|ABC77484.1| ribonuclease PH [Syntrophus aciditrophicus SB] Length = 240 Score = 321 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 114/242 (47%), Positives = 169/242 (69%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R E+++RE+ +TR K+ +GS L++ GDT ++ TA LE KVP ++RN+ GW+T Sbjct: 1 MRKNRRHEDELREVKITRNYLKHPQGSVLIEVGDTKVICTAALEAKVPPFLRNSGKGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T R +RE+V G GGR+ EIQR+IGR+LR+V DL +LG + IDCDVIQ Sbjct: 61 AEYAMLPMATQERNQRESVRGHIGGRTHEIQRLIGRSLRAVTDLDSLGENTVYIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG++VAL D + M++ + ++ +V+A+S G++ G ++DL+Y Sbjct: 121 ADGGTRTASITGSFVALVDLFRKMKE--KGICETMPIRDYVSAVSVGVVDGQLLLDLEYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DVD N VMT +G +EVQG+AER F +D AM+ LA I L ++Q++++ Sbjct: 179 EDSRADVDMNVVMTGAGEFIEVQGTAERVPFGRDRLTAMVELAGRGIRKLTEVQREILGG 238 Query: 241 EV 242 ++ Sbjct: 239 QI 240 >gi|332970986|gb|EGK09959.1| tRNA nucleotidyltransferase [Kingella kingae ATCC 23330] Length = 242 Score = 321 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 116/233 (49%), Positives = 162/233 (69%), Gaps = 2/233 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R N++REI +T +A+GS L++ G+T ++ TAT++E VP ++R GW+TAEYGM Sbjct: 8 RAANELREIRITPNFLPHADGSVLIECGNTKVICTATIDENVPPFLRGKNQGWVTAEYGM 67 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VD+ LG RQI+IDCDVIQADGGT Sbjct: 68 LPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDMQKLGERQILIDCDVIQADGGT 127 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL +Q M ++ L G VAAIS G++ G P++DLDY EDS Sbjct: 128 RTASITGAFVALKIAVQKM--LNDGRLTDTPLMGSVAAISVGVVGGVPLLDLDYPEDSGC 185 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N VM ++ I+E+QG+AE A F D ++ L + I +L + Q+ + Sbjct: 186 DSDVNLVMLNAEKIIEIQGTAEGAAFGLDELQQLIALGQKGIRELTEWQEKAV 238 >gi|121635173|ref|YP_975418.1| ribonuclease PH [Neisseria meningitidis FAM18] gi|161870362|ref|YP_001599532.1| ribonuclease PH [Neisseria meningitidis 053442] gi|218768484|ref|YP_002342996.1| ribonuclease PH [Neisseria meningitidis Z2491] gi|304387097|ref|ZP_07369348.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091] gi|21759416|sp|Q9JTN2|RNPH_NEIMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228298|sp|A1KUT9|RNPH_NEIMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|189043768|sp|A9M0T5|RNPH_NEIM0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|120866879|emb|CAM10638.1| ribonuclease PH [Neisseria meningitidis FAM18] gi|121052492|emb|CAM08831.1| ribonuclease PH [Neisseria meningitidis Z2491] gi|161595915|gb|ABX73575.1| ribonuclease PH [Neisseria meningitidis 053442] gi|304338846|gb|EFM04949.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091] gi|308389647|gb|ADO31967.1| ribonuclease PH [Neisseria meningitidis alpha710] gi|319410733|emb|CBY91115.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria meningitidis WUE 2594] gi|325132653|gb|EGC55339.1| ribonuclease PH [Neisseria meningitidis M6190] gi|325134681|gb|EGC57321.1| ribonuclease PH [Neisseria meningitidis M13399] gi|325138569|gb|EGC61132.1| ribonuclease PH [Neisseria meningitidis ES14902] gi|325198624|gb|ADY94080.1| ribonuclease PH [Neisseria meningitidis G2136] gi|325201806|gb|ADY97260.1| ribonuclease PH [Neisseria meningitidis M01-240149] gi|325205751|gb|ADZ01204.1| ribonuclease PH [Neisseria meningitidis M04-240196] gi|325208441|gb|ADZ03893.1| ribonuclease PH [Neisseria meningitidis NZ-05/33] Length = 242 Score = 321 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 171/239 (71%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T Sbjct: 5 IRIS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ Sbjct: 64 AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240 >gi|196230861|ref|ZP_03129722.1| ribonuclease PH [Chthoniobacter flavus Ellin428] gi|196225202|gb|EDY19711.1| ribonuclease PH [Chthoniobacter flavus Ellin428] Length = 256 Score = 321 bits (823), Expect = 6e-86, Method: Composition-based stats. Identities = 115/241 (47%), Positives = 157/241 (65%), Gaps = 4/241 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59 R GR+ +Q+R IS T ++ ++ GS LV G+T ++ +A +EE +P W++ K GW+ Sbjct: 3 RNDGRKNDQLRPISFTPNIAPHSTGSVLVAAGNTRVICSAMIEESIPNWMKFQKVPGGWL 62 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP ST R +R++ GR GRS EIQR+IGR+LR+VVDL LG R + IDCDV+ Sbjct: 63 TAEYSMLPYSTLERKQRDSAKGRIDGRSVEIQRLIGRSLRAVVDLDLLGPRTLCIDCDVL 122 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA+ITGA VA ++ + + K +K VAA+S G++ G P++DL+Y Sbjct: 123 QADGGTRTASITGACVAASLAVEKLIE--KKLLTKSPIKQLVAAVSVGVVNGEPMLDLNY 180 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED VD N VMT +G VEVQGS E TFS+ AM+ L K I +LI Q+ IS Sbjct: 181 LEDKDASVDMNLVMTANGQFVEVQGSGEEQTFSESELAAMMTLGKKGIGELIAAQRAAIS 240 Query: 240 N 240 + Sbjct: 241 S 241 >gi|15604475|ref|NP_220993.1| ribonuclease PH [Rickettsia prowazekii str. Madrid E] gi|6226021|sp|Q9ZCT5|RNPH_RICPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|3861169|emb|CAA15069.1| RIBONUCLEASE PH (rph) [Rickettsia prowazekii] gi|292572257|gb|ADE30172.1| Ribonuclease PH [Rickettsia prowazekii Rp22] Length = 240 Score = 321 bits (823), Expect = 6e-86, Method: Composition-based stats. Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGM+P ST +R+KREA G+QGGR+QEIQR+IGRA+R V++L LG RQIIIDCDVI Sbjct: 61 AEYGMIPGSTSHRIKREAALGKQGGRTQEIQRLIGRAMRCVINLQKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG++VALH ++ + + L +AAISCG+ G ++DLDY Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRILKVNPLISQIAAISCGIYKGNAVLDLDYL 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS +VD+NFV +G+++EVQG+AE+ FS++ F AML LAK + +L KLQ V+ Sbjct: 179 EDSDAEVDSNFVFACNGNLIEVQGTAEKEPFSEEQFLAMLKLAKSGVVELFKLQNQVL 236 >gi|254805268|ref|YP_003083489.1| ribonuclease PH [Neisseria meningitidis alpha14] gi|254668810|emb|CBA06795.1| ribonuclease PH [Neisseria meningitidis alpha14] gi|325136604|gb|EGC59205.1| ribonuclease PH [Neisseria meningitidis M0579] Length = 242 Score = 321 bits (823), Expect = 7e-86, Method: Composition-based stats. Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM Sbjct: 9 RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240 >gi|103485749|ref|YP_615310.1| ribonuclease PH [Sphingopyxis alaskensis RB2256] gi|123380170|sp|Q1GWJ5|RNPH_SPHAL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|98975826|gb|ABF51977.1| RNAse PH [Sphingopyxis alaskensis RB2256] Length = 238 Score = 320 bits (822), Expect = 7e-86, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR I++ + +AEGS LV FG+T +L TA++EEKVP ++R GW+T Sbjct: 1 MRPSGRAADQMRPIAIETNFTIHAEGSVLVSFGNTRVLVTASVEEKVPPFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMQKLGERQIVIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GAWVAL + + + K + VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGAWVALRLAVDKLIEA--KQLTEDPIVDSVAAISCGIYKGTPVLDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS + D NFV+T G IVEVQ SAE AT+ ++ +L LA+ ++ Q + Sbjct: 179 EDSVAEADGNFVLTGKGQIVEVQASAEGATYDEEGLLRLLRLARIGCGEIFAAQAKAVG 237 >gi|119503532|ref|ZP_01625615.1| ribonuclease PH [marine gamma proteobacterium HTCC2080] gi|119460594|gb|EAW41686.1| ribonuclease PH [marine gamma proteobacterium HTCC2080] Length = 243 Score = 320 bits (822), Expect = 8e-86, Method: Composition-based stats. Identities = 115/238 (48%), Positives = 159/238 (66%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +++R I+ R + +AEGS LV FG T +L TA+L VP ++R GW+TA Sbjct: 7 RPSGRALDELRAITFERNFTCHAEGSVLVSFGQTRVLCTASLTPGVPGFLRGKGQGWLTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRSTG+R+ REA G+Q GR+ EIQR+IGR+LR+ +DL ALG + +DCDVIQA Sbjct: 67 EYGMLPRSTGSRMNREASRGKQSGRTVEIQRLIGRSLRAAIDLKALGENTLTLDCDVIQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+I+GA VA+ D L ++ + S LK + A+S G+ G ++DLDY E Sbjct: 127 DGGTRTASISGACVAVVDALNTLQRKQSL--QSDPLKFLIGAVSVGVWKGQAVLDLDYAE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DST D D N V+ + G ++EVQG+AE A F + +ML+LA +I Q++ +S Sbjct: 185 DSTADTDMNVVVAEGGGLIEVQGTAEGAAFERAELNSMLDLAVAGGEIIISKQREALS 242 >gi|241760285|ref|ZP_04758380.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114] gi|241319163|gb|EER55641.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114] Length = 242 Score = 320 bits (822), Expect = 8e-86, Method: Composition-based stats. Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR + +R I +T +A+GSCL++ G+T ++ TA+++E VP ++R + GW+TAEYG Sbjct: 8 GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 67 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGG Sbjct: 68 MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 128 TRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 185 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N +MT SG I+E+QG+AE A FS + ++ LA IA+L++ Q+ + Sbjct: 186 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAAL 239 >gi|254475610|ref|ZP_05088996.1| ribonuclease PH [Ruegeria sp. R11] gi|214029853|gb|EEB70688.1| ribonuclease PH [Ruegeria sp. R11] Length = 227 Score = 320 bits (822), Expect = 8e-86, Method: Composition-based stats. Identities = 122/227 (53%), Positives = 161/227 (70%), Gaps = 2/227 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ T GW+TAEYGMLPR+T Sbjct: 1 MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R++REA G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+QADGGTR A+I Sbjct: 61 NTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTRCASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TG WVAL + + + L VAA+SCG+ G P++DLDY EDS VD N Sbjct: 121 TGGWVALRLAVNKLMKAGDVTI--DPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 F+MT SG ++EVQ SAE + FS+D +++LA A+L ++QK Sbjct: 179 FIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTAELAEIQKAA 225 >gi|163856581|ref|YP_001630879.1| ribonuclease PH [Bordetella petrii DSM 12804] gi|163260309|emb|CAP42611.1| ribonuclease PH [Bordetella petrii] Length = 246 Score = 320 bits (822), Expect = 8e-86, Method: Composition-based stats. Identities = 121/238 (50%), Positives = 167/238 (70%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R SL R ++YAEGS LV+ G+TH+L TA++ +KVP +++ GW+TA Sbjct: 11 RPSGRAVDQLRPFSLQRGYTRYAEGSVLVRAGNTHVLCTASVLDKVPPFLKGRGEGWVTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA Sbjct: 71 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQA 130 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVA D + + + + ++ VAA+S GM+ G P++DLDY E Sbjct: 131 DGGTRCASITGAWVAAADAVALLMQRGDL--AANPIRDAVAAVSVGMVAGRPVLDLDYQE 188 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VMT +G VEVQG+ E ATF++ AML LA+ IA L++ Q++ ++ Sbjct: 189 DSACDADVNVVMTGAGAFVEVQGTGEGATFARSELDAMLGLAEQGIAQLVRAQREALA 246 >gi|332159681|ref|YP_004296258.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318603777|emb|CBY25275.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica Y11] gi|325663911|gb|ADZ40555.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 238 Score = 320 bits (822), Expect = 8e-86, Method: Composition-based stats. Identities = 118/240 (49%), Positives = 158/240 (65%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I + QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETIFLAQKAALEQ 238 >gi|325128546|gb|EGC51419.1| ribonuclease PH [Neisseria meningitidis N1568] gi|325143439|gb|EGC65766.1| ribonuclease PH [Neisseria meningitidis M01-240013] Length = 242 Score = 320 bits (822), Expect = 8e-86, Method: Composition-based stats. Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM Sbjct: 9 RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240 >gi|114326689|ref|YP_743846.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1] gi|114314863|gb|ABI60923.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1] Length = 250 Score = 320 bits (821), Expect = 9e-86, Method: Composition-based stats. Identities = 122/237 (51%), Positives = 163/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R +SL + +AEGSCL++ G T +L TA+ E ++P ++R T GW+TA Sbjct: 10 RPSGRAADALRSVSLETGFAHHAEGSCLIRMGRTEVLCTASAEPRIPGFLRGTGKGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGRALR+VVD A+G I +DCDV+ A Sbjct: 70 EYGMLPRATHKRGDREAARGKQSGRTQEIQRLIGRALRAVVDRDAMGEMSITLDCDVLNA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A++TGA+VAL M + L G VAA+SCG++ G P++DLDY E Sbjct: 130 DGGTRCASVTGAYVALSLAFHKMVKAG--VLKAVPLHGQVAAVSCGVVGGQPVLDLDYIE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS + D+NFV+TD+G IVE+QG+AE A FS+ F AML LA+ A L +Q+D I Sbjct: 188 DSGAEADSNFVLTDAGGIVEIQGTAEGAPFSEADFSAMLGLARQGTAQLFTMQRDAI 244 >gi|329114777|ref|ZP_08243534.1| Ribonuclease PH [Acetobacter pomorum DM001] gi|326695908|gb|EGE47592.1| Ribonuclease PH [Acetobacter pomorum DM001] Length = 267 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +QMR I++ + +AEGS L++ G T +L TA++E +VP ++R GW+T Sbjct: 24 MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVT 83 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL+ALG I +DCDV+ Sbjct: 84 AEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLNALGEMSITLDCDVLN 143 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGAWVAL L + + L+G VAA+SCG+ ++DLDY Sbjct: 144 ADGGTRCASITGAWVALRLALGKL--VATNVLPRLPLRGQVAAVSCGLTTEGAVLDLDYV 201 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ D NFV+T IVE+QG+AE A F++D F + LA+ + +L + Q + Sbjct: 202 EDSSASADTNFVLTADRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQIAAVE 260 >gi|319948537|ref|ZP_08022668.1| ribonuclease PH [Dietzia cinnamea P4] gi|319437784|gb|EFV92773.1| ribonuclease PH [Dietzia cinnamea P4] Length = 261 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 110/238 (46%), Positives = 157/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R++++TR + + GS LV FG T ++ TA++ E VP W + + GW+TA Sbjct: 8 RADGRGVDELRDVTITRGFTSHPAGSVLVTFGQTRVMCTASVTEGVPRWRKGSGLGWLTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V G+ GGR+ EI R++GR+LR+ +DLSALG I +DCDV+QA Sbjct: 68 EYAMLPAATHERSGRESVRGKVGGRTHEISRLVGRSLRACIDLSALGENTIALDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ L G VAA+S G++ G+ + DL Y E Sbjct: 128 DGGTRTAAITGAYVALADAITWLQSSGAV--TGNPLTGAVAAVSVGVVDGHVLCDLPYEE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD G ++EVQG+AE A F +D AML+ A+ L LQ++ ++ Sbjct: 186 DSRAEVDMNVVCTDGGKLIEVQGTAEGAAFGRDVLDAMLDSAQAGCERLFALQREALA 243 >gi|183601855|ref|ZP_02963224.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis HN019] gi|219682769|ref|YP_002469152.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011] gi|183218740|gb|EDT89382.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis HN019] gi|219620419|gb|ACL28576.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011] gi|289178068|gb|ADC85314.1| Ribonuclease PH [Bifidobacterium animalis subsp. lactis BB-12] Length = 246 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 104/228 (45%), Positives = 145/228 (63%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R + +TR + EGS L++ G+T ++ TAT + VP W +++ GW+TA Sbjct: 5 RADGRAYDELRPVRITRAFTDVPEGSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GGR+ EI R+IGR LR V+D+ ALG I +DCDV+QA Sbjct: 65 EYSMLPRATAQRTDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + VL V+A+S G++ G P++DL Y E Sbjct: 125 DGGTRTASITGAHVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 DS D N MT SG VE+QG+AE FS++ +L+LA + Sbjct: 185 DSRAMTDMNVAMTGSGKFVEIQGTAEHRPFSRNELGVLLDLATKGNRE 232 >gi|320534625|ref|ZP_08035070.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337] gi|320133145|gb|EFW25648.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337] Length = 268 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 105/242 (43%), Positives = 146/242 (60%), Gaps = 2/242 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVSFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D++ALG I +DCDV+QA Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTAAITGA+VAL D + + L ++AIS G++ G P +DL Y Sbjct: 128 DGGTRTAAITGAYVALADAVAWGTERGLIKARPGKPALSDSLSAISVGIIDGVPCLDLPY 187 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D N V T G +EVQG+AE A F + +L+LA + L LQ+ ++ Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAAVGNSRLAALQRQALA 247 Query: 240 NE 241 Sbjct: 248 GP 249 >gi|15677352|ref|NP_274507.1| ribonuclease PH [Neisseria meningitidis MC58] gi|21759417|sp|Q9JYN5|RNPH_NEIMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|7226741|gb|AAF41855.1| ribonuclease PH [Neisseria meningitidis MC58] gi|316986046|gb|EFV64983.1| ribonuclease PH [Neisseria meningitidis H44/76] gi|325140644|gb|EGC63162.1| ribonuclease PH [Neisseria meningitidis CU385] gi|325199896|gb|ADY95351.1| ribonuclease PH [Neisseria meningitidis H44/76] Length = 242 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 170/239 (71%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+S R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+T Sbjct: 5 IRIS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP ST +R+ REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQ Sbjct: 64 AEYGMLPASTASRMLREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240 >gi|311031422|ref|ZP_07709512.1| ribonuclease PH [Bacillus sp. m3-13] Length = 253 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 109/239 (45%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR++NQ+REI + + EGS L+ G+T ++ +AT+E++VP ++R GWITA Sbjct: 3 RTDGREQNQLREIEIITDYITHPEGSVLISVGNTKVICSATIEDRVPPFMRGGGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+ G+ GR+ EIQR+IGRALRSVV+L +G + I IDCDVIQA Sbjct: 63 EYSMLPRATEKRTMRESTKGKVTGRTMEIQRLIGRALRSVVELDKIGEKTIWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180 DGGTRTA+ITGA+VA+ Q + + K S + +AA S G++ G ++DL+Y Sbjct: 123 DGGTRTASITGAFVAMVLAFQKLVEA--KRIASLPVTDFLAATSVGVMKDGQALLDLNYI 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST VD N +MT S +VE+QG+ E +TF++ +L++A++ I L+++QK + Sbjct: 181 EDSTAQVDMNVIMTGSLDLVELQGTGEESTFTRKQLNELLDMAEEGILHLVEVQKKALG 239 >gi|291286002|ref|YP_003502818.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809] gi|290883162|gb|ADD66862.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809] Length = 236 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 111/239 (46%), Positives = 155/239 (64%), Gaps = 3/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ + +R++ + + + EGS LV FGDT ++ A++ E VP ++R++ GW+T Sbjct: 1 MR-NERKNDSLRKVEIIKDYISHPEGSVLVAFGDTKVICNASVSEGVPPFLRDSGTGWVT 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+Q GRSQEI R+IGR+LR+ VD LG + IDCDVIQ Sbjct: 60 AEYAMLPRATHTRNQRESKRGKQDGRSQEISRLIGRSLRAAVDFEKLGENTVTIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG + AL+ + M + G V+AIS G++ G P++DL+Y Sbjct: 120 ADGGTRTAAITGGFCALYMACEWM--IKQGMIAENPVTGMVSAISVGIVMGEPMLDLEYA 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N V+ D+ IVE+QGSAE+ F +D ML+L I +L +QK VI Sbjct: 178 EDSIADVDMNLVVKDNAEIVEIQGSAEKVAFDRDLLNKMLDLGFKGIKELTDIQKQVIK 236 >gi|261365535|ref|ZP_05978418.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996] gi|288565953|gb|EFC87513.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996] Length = 246 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 116/234 (49%), Positives = 166/234 (70%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R+I +T +A+GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM Sbjct: 9 RDADSLRDIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 129 RTASITGAFVALQIAVNKL--ISDDLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS D ++ LA+ IA+L Q++ + Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELTAHQQNALK 240 >gi|285017590|ref|YP_003375301.1| ribonuclease ph protein [Xanthomonas albilineans GPE PC73] gi|283472808|emb|CBA15313.1| hypothetical ribonuclease ph protein [Xanthomonas albilineans] Length = 241 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 117/228 (51%), Positives = 157/228 (68%), Gaps = 2/228 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR Q+R + + R +++AEGS LV FGDT +L A+++ +VP ++R GW+TA Sbjct: 5 RPSGRTAEQLRPVRIERAFTRHAEGSVLVSFGDTRVLCNASVDNRVPGFLRGKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R +REA G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRATHSRSEREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + V+ G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALVDAVNWLRQRGELKK--PVVLGAVAAVSVGIYRGVPVLDLDYAE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 DS D D N VM D G +E+QG+AE F +D A+L LA+ I + Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAERGIGE 230 >gi|56550910|ref|YP_161749.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4] gi|260753398|ref|YP_003226291.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|61215796|sp|Q5NRL6|RNPH_ZYMMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56542484|gb|AAV88638.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4] gi|258552761|gb|ACV75707.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 237 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +Q+R +S+ +++AEGSCL+ FGDT +L TA+LEE++P W+R GW+T Sbjct: 1 MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+Q GR+QEIQR+IGR+LR+ +DL LG RQI IDCDV+Q Sbjct: 61 AEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G WVAL + + + VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGGWVALRLAVNKLLASGQL--TEDPIISQVAAVSCGISQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST + DANFVM ++EVQ SAE A + ++ +L LA+ + QK ++ Sbjct: 179 EDSTAEADANFVMMGDSRLIEVQASAEGAPYDEEGLLRLLRLARMGCQQIFAEQKKAVA 237 >gi|329947440|ref|ZP_08294644.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str. F0386] gi|328525190|gb|EGF52241.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str. F0386] Length = 264 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 108/242 (44%), Positives = 148/242 (61%), Gaps = 2/242 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++TR +AEGS LV FG T +L A+ E VP W + + GW+TA Sbjct: 8 RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R RE+V G+ GGR+ EI R+IGR+LR ++D+SALG I +DCDV+QA Sbjct: 68 EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVSALGENTIALDCDVLQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179 DGGTRTAAITGA+VAL D + + S VL ++AIS G++ G P +DL Y Sbjct: 128 DGGTRTAAITGAYVALADAVTWGTERGLIKARSGKPVLSDSLSAISVGIIDGVPCLDLPY 187 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D N V T G +EVQG+AE A F + ++L+LA L LQ+ ++ Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGSLLDLAATGNTRLAALQRRALA 247 Query: 240 NE 241 Sbjct: 248 GP 249 >gi|118580726|ref|YP_901976.1| ribonuclease PH [Pelobacter propionicus DSM 2379] gi|118503436|gb|ABK99918.1| RNAse PH [Pelobacter propionicus DSM 2379] Length = 239 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR +R +++TR +KYAEG+ LV+FGDT ++ TA++EE VP ++R GW+T Sbjct: 2 VRKNGRDSRALRPVAITRNFTKYAEGAVLVEFGDTRVICTASVEESVPSFLRGRGTGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+Q GR+ EIQR+IGR+LR+V DL+ALG R + +DCDV+Q Sbjct: 62 AEYSMLPRATHTRSSREASKGKQSGRTLEIQRLIGRSLRAVTDLAALGERSVYLDCDVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D L ++ L+ VAA+S G++ G ++DLDY Sbjct: 122 ADGGTRTASITGAYVALADALATLKQ--RGLLERIPLREAVAAVSVGIVGGESLLDLDYD 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ +VD NFVMT S VEVQG+AE F+ + AM +LA D I L LQ++ + Sbjct: 180 EDSSAEVDMNFVMTSSQRFVEVQGTAEVEPFTLEQMDAMRSLAMDGIQCLFDLQREALKG 239 >gi|126734415|ref|ZP_01750162.1| ribonuclease PH [Roseobacter sp. CCS2] gi|126717281|gb|EBA14145.1| ribonuclease PH [Roseobacter sp. CCS2] Length = 235 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 125/239 (52%), Positives = 172/239 (71%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ N+MRE+S+ V+ +AEGSCL+K G+TH+L TAT++E+VP +++N+ GW+T Sbjct: 1 MRPSGRQTNEMREVSIETGVTMHAEGSCLIKCGNTHVLCTATIDERVPPFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G Q GR+QEIQR+IGR+LR+ VD AL RQI++DCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALSERQIVVDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + S L VAAISCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMKAGDVI--SDPLIDPVAAISCGIYAGQEVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NFVMT G ++E+Q SAE +TF++ +++LA+ + +L +Q +S Sbjct: 178 EDSEAGVDGNFVMTG-GKMIEIQMSAEGSTFTRAQMDGLVDLAEKGVGELTAIQLAAVS 235 >gi|225165849|ref|ZP_03727626.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2] gi|224799908|gb|EEG18360.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2] Length = 254 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 111/243 (45%), Positives = 155/243 (63%), Gaps = 4/243 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59 R GR+ +Q+R I+ ++ +A GS L FG+T ++ AT+E KVP+W++ K GW+ Sbjct: 6 RADGRRPDQLRPITFEANIAPHATGSVLASFGNTRVICAATIEPKVPLWMKQQKVPGGWL 65 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY +LP ST +R R+ G+ GR+ EIQR+IGRALR+V+DLS LG + IDCDV+ Sbjct: 66 TAEYSLLPYSTHDRKARDISKGKLDGRTVEIQRLIGRALRAVLDLSKLGENTLWIDCDVL 125 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA+ITGA++A LQ + D +AAIS G+L G ++DL Y Sbjct: 126 QADGGTRTASITGAYLATRLALQKLLDTGKL--AENPFTDSIAAISVGILGGRELLDLPY 183 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED +VDAN VMT GH VEVQ S E ATF+ D A+L LA+ + ++ LQ ++ Sbjct: 184 TEDKDAEVDANIVMTGRGHFVEVQTSGEEATFTYDQLQALLGLAQKGLKEIAALQTAFLT 243 Query: 240 NEV 242 ++ Sbjct: 244 RQL 246 >gi|308177068|ref|YP_003916474.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117] gi|307744531|emb|CBT75503.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117] Length = 244 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 114/240 (47%), Positives = 160/240 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR Q+R+I++TR S AEGS L++FG+T +L TA+ E VP W++ GW+T Sbjct: 3 LRADGRGAAQLRDITITRGWSAQAEGSALIEFGNTRVLCTASFTEGVPRWLKGQGTGWVT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GR+ EI R+IGR+LR+VVD ALG I++DCDV+Q Sbjct: 63 AEYAMLPRATNTRNSRESVKGKLSGRTHEISRLIGRSLRAVVDTKALGENTIVLDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL + + Q ++VL VAAIS G++ G P++DL Y Sbjct: 123 ADGGTRTAAITGAYVALAEAIAWATSQGIVKQNAKVLTDSVAAISVGIIDGTPMLDLPYE 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D N V+T SG VEVQG+AE F + A+L+LA ++L ++Q++ + + Sbjct: 183 EDVRAETDMNVVVTGSGDFVEVQGTAEGVPFKRAELDALLDLALGGTSELAEIQRETLGS 242 >gi|238750796|ref|ZP_04612294.1| Ribonuclease PH [Yersinia rohdei ATCC 43380] gi|238710940|gb|EEQ03160.1| Ribonuclease PH [Yersinia rohdei ATCC 43380] Length = 238 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 118/240 (49%), Positives = 160/240 (66%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS + D N VM + G ++EVQG+AE FS + A+L+LA+ I + QK + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFLAQKAALEQ 238 >gi|163737986|ref|ZP_02145402.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis BS107] gi|161388602|gb|EDQ12955.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis BS107] Length = 227 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 121/227 (53%), Positives = 160/227 (70%), Gaps = 2/227 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ + GW+TAEYGMLPR+T Sbjct: 1 MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R++REA G+QGGR+ EIQR+IGRALR+ VD ALG RQI IDCDV+QADGGTR A+I Sbjct: 61 NTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTRCASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TG WVAL + + L VAA+SCG+ G P++DLDY EDS VD N Sbjct: 121 TGGWVALRLAVNKLMKTGEVKI--DPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 F+MT SG ++EVQ SAE + FS++ +++LA A+L +LQK Sbjct: 179 FIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQKAA 225 >gi|188586564|ref|YP_001918109.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351251|gb|ACB85521.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF] Length = 246 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 105/240 (43%), Positives = 157/240 (65%), Gaps = 3/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +++R + + K+ EGS L+ GDT ++ +AT+E KVP +++ GW+T Sbjct: 1 MREN-RKVDEIRPVKIETDFVKHPEGSVLITVGDTKVICSATIESKVPSFLKGEGKGWVT 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R REA G+ GGR+QEIQR+IGR+LRS+V+L LG R I +DCDVIQ Sbjct: 60 AEYSMLPRATESRNIREAAKGKLGGRTQEIQRLIGRSLRSMVNLKKLGERTIWLDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+V++ L + + +L ++G++AAIS G++ ++DLD Sbjct: 120 ADGGTRTASITGAFVSMVLALNKLVEEKELSEL--PVEGYLAAISVGIVNDEIMLDLDGK 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED D D N TD G VE+QG+ E FS++ ML+ A+ + L+++Q +S Sbjct: 178 EDFQADTDMNVAGTDKGEFVEIQGTGENHPFSKNEMEKMLSYAEKGMHALMEVQSQALSE 237 >gi|255263447|ref|ZP_05342789.1| ribonuclease PH [Thalassiobium sp. R2A62] gi|255105782|gb|EET48456.1| ribonuclease PH [Thalassiobium sp. R2A62] Length = 235 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 129/237 (54%), Positives = 172/237 (72%), Gaps = 4/237 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR I++ V+K+AEGSCL++ GDTH+L AT+E++VP ++RN+ GW+T Sbjct: 1 MRPSGRSIDEMRAITIETDVTKHAEGSCLIQCGDTHVLCAATVEDRVPPFMRNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G Q GR+QEIQR+IGR+LR+ VD ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + + S L+ VAAISCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALKLAVNKLIKAGDII--SDPLETPVAAISCGIYAGQAVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS VD NFVMT S ++EVQ SAE ATFS+D +++LA+ +A+L +LQ D Sbjct: 178 EDSEAGVDGNFVMTGS-QMIEVQMSAEGATFSRDQMNELVDLAEKGVAELSRLQIDA 233 >gi|255659135|ref|ZP_05404544.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544] gi|260848582|gb|EEX68589.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544] Length = 248 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 112/242 (46%), Positives = 153/242 (63%), Gaps = 5/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R + +R + R KY GS L++ G+T ++ A++E++VP ++R T GWI A Sbjct: 3 RPDRRTADALRPYEMHRHFQKYPAGSVLIEMGNTKVICAASIEDRVPFFLRGTGEGWIAA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP +T R +REAV G+Q GR+QEI+R+IGR+LRSVVD ALG R I+IDCDVIQA Sbjct: 63 EYSLLPSATETRTQREAVRGKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180 DGGTRTA+ITGA+VAL + + F +K ++AIS G+ G PI+DL Y Sbjct: 123 DGGTRTASITGAFVALVEACASFYEKGKIF----PVKDFLSAISVGVSHEGVPILDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT G VEVQG+ E F+ + +L L + +LI +KDV+ Sbjct: 179 EDSRAIVDMNVVMTGVGRFVEVQGTGEGRPFTHEELGELLALGEKGCRELISYEKDVLGG 238 Query: 241 EV 242 E+ Sbjct: 239 EL 240 >gi|330813340|ref|YP_004357579.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063] gi|327486435|gb|AEA80840.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063] Length = 237 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 121/240 (50%), Positives = 168/240 (70%), Gaps = 3/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R+ ++R+I +T K A+ SCL+K GDTH++ TA++EEKVP W++ + GW+T Sbjct: 1 MRND-RKNLELRKIEITTDFIKNADASCLIKSGDTHVVCTASIEEKVPRWLKGSGKGWVT 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++RE+ G+ GGR+ EIQR+IGR+LR+ ++L LG I IDCDV+Q Sbjct: 60 AEYGMLPRSTHERMRRESSVGKVGGRTSEIQRLIGRSLRASMNLKLLGEYLITIDCDVLQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL C+ M K +K +VAAISCG++ G ++DLDY Sbjct: 120 ADGGTRTASITGGFVALKKCIDLM--IKRKQINHNPIKSYVAAISCGIVNGEFLMDLDYE 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DVD+N+VM D G I+E+Q + E+ T S++ F ML +K IA++I LQK +S Sbjct: 178 EDSQADVDSNYVMNDKGDIIELQLTGEQTTCSEEEFMKMLRHSKSSIAEIITLQKKALSE 237 >gi|171741378|ref|ZP_02917185.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC 27678] gi|283455270|ref|YP_003359834.1| ribonuclease PH [Bifidobacterium dentium Bd1] gi|306823668|ref|ZP_07457043.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679] gi|309803034|ref|ZP_07697135.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022] gi|171276992|gb|EDT44653.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC 27678] gi|283101904|gb|ADB09010.1| rph Ribonuclease PH [Bifidobacterium dentium Bd1] gi|304553375|gb|EFM41287.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679] gi|308220501|gb|EFO76812.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022] Length = 254 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 108/229 (47%), Positives = 154/229 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R + +TRR + EGS L++ G+T ++ TAT VP W +++ GW+T Sbjct: 14 IRADGRKVDELRPVRITRRFTDVPEGSVLIECGNTRVMCTATFTSGVPRWRKDSGLGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R+IGR LR VVD+ ALG Q+ IDCDV+Q Sbjct: 74 AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL D ++ E + +VLK V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAERHRHIKSADRVLKDCVSAVSVGVINGKPMLDLPYI 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 EDS D N MT SG +E+QG+AE FS+ A+L+LA+ + Sbjct: 194 EDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFSRAELNALLDLAEQGNKE 242 >gi|28198628|ref|NP_778942.1| ribonuclease PH [Xylella fastidiosa Temecula1] gi|71274728|ref|ZP_00651016.1| Ribonuclease PH [Xylella fastidiosa Dixon] gi|71899591|ref|ZP_00681746.1| Ribonuclease PH [Xylella fastidiosa Ann-1] gi|71900258|ref|ZP_00682395.1| Ribonuclease PH [Xylella fastidiosa Ann-1] gi|170730030|ref|YP_001775463.1| ribonuclease PH [Xylella fastidiosa M12] gi|182681311|ref|YP_001829471.1| ribonuclease PH [Xylella fastidiosa M23] gi|32129976|sp|Q87DG3|RNPH_XYLFT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736953|sp|B2IA38|RNPH_XYLF2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736954|sp|B0U6W7|RNPH_XYLFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|28056712|gb|AAO28591.1| ribonuclease PH [Xylella fastidiosa Temecula1] gi|71164460|gb|EAO14174.1| Ribonuclease PH [Xylella fastidiosa Dixon] gi|71729971|gb|EAO32065.1| Ribonuclease PH [Xylella fastidiosa Ann-1] gi|71730633|gb|EAO32709.1| Ribonuclease PH [Xylella fastidiosa Ann-1] gi|167964823|gb|ACA11833.1| tRNA nucleotidyltransferase [Xylella fastidiosa M12] gi|182631421|gb|ACB92197.1| ribonuclease PH [Xylella fastidiosa M23] gi|307579762|gb|ADN63731.1| ribonuclease PH [Xylella fastidiosa subsp. fastidiosa GB514] Length = 241 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 121/238 (50%), Positives = 164/238 (68%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ + +R + + R + +AEGS LV FG+T ++ TA++E KVP+++RN GWITA Sbjct: 5 RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWITA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R +REA G+Q GR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ +E + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLEQRGQLKK--SPLIGAVAAVSVGIYRGMPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM D G +E+QG+AE+ F + +L LA+ A L +Q++ ++ Sbjct: 183 DSDCDTDMNVVMNDEGGFIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREALA 240 >gi|116626750|ref|YP_828906.1| ribonuclease PH [Candidatus Solibacter usitatus Ellin6076] gi|122251374|sp|Q01NZ9|RNPH_SOLUE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|116229912|gb|ABJ88621.1| RNAse PH [Candidatus Solibacter usitatus Ellin6076] Length = 238 Score = 318 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 114/240 (47%), Positives = 157/240 (65%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R Q+R + +T AEGS L+K G+TH+L AT+E+ VP ++RNT GW+T Sbjct: 1 MRTDNRTAGQLRPVQITTGCLMTAEGSALIKVGNTHVLCAATIEDTVPPFLRNTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE GR GR+ EIQR+IGR++RS VD+S+ G R +IIDCDVIQ Sbjct: 61 AEYSMLPRATAKRTPREVTKGRPSGRTHEIQRLIGRSMRSAVDMSSFGERTLIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ + + + + + ++ +VAA S G++ G P++DL Y Sbjct: 121 ADGGTRTASITGAFVAMALAFRQLIEY--RALKANPIRDYVAATSVGLVGGIPMLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DVD N VMT G VEVQ +AE + F + LA+ IA L+++QK++I Sbjct: 179 EDSQADVDMNVVMTGGGKFVEVQATAEHSAFDDAQMAELTELARTGIAQLVRMQKEIIEG 238 >gi|225175207|ref|ZP_03729203.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1] gi|225169383|gb|EEG78181.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1] Length = 239 Score = 318 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 116/238 (48%), Positives = 162/238 (68%), Gaps = 4/238 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ ++MR + +T KY EGS L++ GDT ++ TA++EEKVP ++R GW+T Sbjct: 1 MRVDGRRTDEMRPLKITPEFLKYPEGSVLIEVGDTRVICTASVEEKVPPFLRGENKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE G+ GRS EIQR+IGRALRSVVDL ALG R + +DCDV+Q Sbjct: 61 AEYAMLPRATQIRTMRE--RGKISGRSSEIQRLIGRALRSVVDLKALGERTVWVDCDVVQ 118 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+G++VAL+ L + ++ + ++AA S G++ ++DL + Sbjct: 119 ADGGTRTAAISGSFVALYLALSKLVAAGTLSEV--PVTDYLAATSIGIVDDKLMLDLAFS 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS DVD N VMT SG+IVEVQG+AE A FS+ M++LA I +++ QK ++ Sbjct: 177 EDSKADVDMNVVMTGSGNIVEVQGTAEGAAFSRQAMDEMMDLAAKGIDEIVDYQKRLL 234 >gi|296533566|ref|ZP_06896135.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957] gi|296266103|gb|EFH12159.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957] Length = 239 Score = 318 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R +SL V+++AEGSCL++ G T +L TA++E +VP ++R GW+T Sbjct: 1 MRPSGRAADALRSVSLQPGVARHAEGSCLIRMGVTEVLCTASVEGRVPPFLRGKGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD A+G I++DCDVI Sbjct: 61 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRKAMGEVSIVLDCDVIT 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITGAWVALH L+H + + L+ VAAISCG+ G PI+DL+Y Sbjct: 121 ADGGTRCAAITGAWVALHQALEH--CVTKNLISANPLRDQVAAISCGLWEGEPILDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DANFV+T G IVEVQG+AE FS ++ LA+ A+L Q+ I Sbjct: 179 EDSAAQADANFVLTGKGGIVEVQGTAEGEPFSDAQLLGLMALARKGTAELFAAQRRAIG 237 >gi|323489951|ref|ZP_08095172.1| ribonuclease PH [Planococcus donghaensis MPA1U2] gi|323396247|gb|EGA89072.1| ribonuclease PH [Planococcus donghaensis MPA1U2] Length = 249 Score = 318 bits (816), Expect = 4e-85, Method: Composition-based stats. Identities = 111/240 (46%), Positives = 159/240 (66%), Gaps = 7/240 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ RQ N++R +++ + EGS L+ G T ++ TAT+E+KVP ++R GWITA Sbjct: 3 RIDNRQTNELRPVTVDVEYLIHPEGSVLITVGQTKVICTATIEDKVPGFLRGQGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R +REA +G+ GGR+ EIQR+IGRALR+VVDL LG R + IDCDVIQA Sbjct: 63 EYSMLPRATNSRNRREASAGKIGGRTMEIQRLIGRALRAVVDLEKLGERTLWIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180 DGGTRTA+ITGA++A+ + +E + +AA S G+ PI+DL+Y Sbjct: 123 DGGTRTASITGAFIAMTMAIGKLE------LPDFPVTDFLAATSVGVTAENGPILDLNYV 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ +VD N VMT +GH VE+QG+ E +TF++ +L+L + I LI +Q+D + Sbjct: 177 EDSSAEVDMNLVMTGAGHFVELQGTGEESTFTRAQLNELLDLGEAGIRQLIAMQQDALGE 236 >gi|262038518|ref|ZP_06011887.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264] gi|261747387|gb|EEY34857.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264] Length = 230 Score = 318 bits (816), Expect = 4e-85, Method: Composition-based stats. Identities = 110/233 (47%), Positives = 157/233 (67%), Gaps = 3/233 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR++ R+ ++MRE+ +T+ + EGS L++FG+T ++ AT+EEKVP ++R T GWIT Sbjct: 1 MRVN-RKNDEMREVKVTKNYIMHPEGSVLIEFGNTKVICNATVEEKVPPFLRGTNSGWIT 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T NRV+REA GR GR+ EIQR+IGRALR+ V+L LG R +IIDCDVIQ Sbjct: 60 AEYSMLPRATNNRVQREANKGRLSGRTMEIQRLIGRALRAAVNLEKLGERTVIIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG ++AL ++ + D ++ + VAA+S G + ++DL+Y Sbjct: 120 ADGGTRTASITGGYLALELAIEKLIDKGKLNEI--PINSRVAAVSVGKIKNEILLDLEYE 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ED DVD N +M D G +E+QG+ E ATF+Q+ + ++K L L Sbjct: 178 EDFRADVDMNIIMNDKGEFIELQGTGEEATFTQEELLKFIEISKKGFEKLFNL 230 >gi|224585533|ref|YP_002639332.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470061|gb|ACN47891.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 228 Score = 318 bits (816), Expect = 4e-85, Method: Composition-based stats. Identities = 120/230 (52%), Positives = 157/230 (68%), Gaps = 2/230 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWITAEYGMLPR+T Sbjct: 1 MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDV+QADGGTRTA+I Sbjct: 61 HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQADGGTRTASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TGA VAL D L + +N + +KG VAA+S G++ G I DL+Y EDS + D N Sbjct: 121 TGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 179 VVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 228 >gi|294056535|ref|YP_003550193.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221] gi|293615868|gb|ADE56023.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221] Length = 252 Score = 318 bits (815), Expect = 5e-85, Method: Composition-based stats. Identities = 106/240 (44%), Positives = 143/240 (59%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59 R R +Q+R I ++ +A GS LV FG T ++ A++++KVP W+R + GW+ Sbjct: 11 RPDQRAVDQLRPIHFETGIAPHALGSVLVSFGQTRVICAASIDKKVPGWMRAQGVEGGWM 70 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP ST +R R+ G+ GR+ EIQR+IGR+LR+V DL L R I IDCDV+ Sbjct: 71 TAEYSMLPYSTLDRKPRDISRGKADGRTIEIQRLIGRSLRAVFDLKKLPGRTIWIDCDVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA+I+GA+VA +Q + + VAAIS G+ P++DL+Y Sbjct: 131 QADGGTRTASISGAYVAAQIAVQKLIAAGEL--EANPFTDSVAAISVGVFQDTPVLDLNY 188 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED VDAN VMT +G VEVQ S E ATF + +L L I +L LQ+ I Sbjct: 189 PEDKDASVDANIVMTGTGKYVEVQSSGEEATFDRAELDTLLELGAKGIQELSALQQQAIE 248 >gi|237654670|ref|YP_002890984.1| ribonuclease PH [Thauera sp. MZ1T] gi|237625917|gb|ACR02607.1| ribonuclease PH [Thauera sp. MZ1T] Length = 243 Score = 318 bits (815), Expect = 5e-85, Method: Composition-based stats. Identities = 126/242 (52%), Positives = 168/242 (69%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S RQ +Q+R + LTR + +AEGS LV+FG T +L TA++EE VP ++R GW+T Sbjct: 1 MRPSLRQPDQLRAVRLTRGFTCHAEGSVLVEFGATRVLCTASVEETVPGFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI++DCDV+Q Sbjct: 61 AEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLGALGERQIVVDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VA+HD L + ++ VAA+S G+ G P++DLDY Sbjct: 121 ADGGTRTAAITGACVAVHDALVGLVAAGKL--AHNPMREFVAAVSVGIHQGVPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D D N VMT+ G ++EVQG+AE FS+ A+L+LA+ L +LQ+ + + Sbjct: 179 EDSDCDTDMNVVMTEGGGLIEVQGTAEGTPFSRAELDALLDLAELGGRQLFELQRGAVRS 238 Query: 241 EV 242 + Sbjct: 239 AI 240 >gi|313668116|ref|YP_004048400.1| ribonuclease PH [Neisseria lactamica ST-640] gi|313005578|emb|CBN87014.1| ribonuclease PH [Neisseria lactamica 020-06] Length = 242 Score = 318 bits (815), Expect = 5e-85, Method: Composition-based stats. Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R+I +T R + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM Sbjct: 9 RAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R++REA G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTASRMRREASEGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSAGVVNGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240 >gi|297583709|ref|YP_003699489.1| ribonuclease PH [Bacillus selenitireducens MLS10] gi|297142166|gb|ADH98923.1| ribonuclease PH [Bacillus selenitireducens MLS10] Length = 261 Score = 318 bits (815), Expect = 6e-85, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 3/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R +Q+R+I + K+ EGS L+ FGDT ++ +A++E++VP ++R GW+TA Sbjct: 3 RAFERLNHQLRDIDMIPGYIKHPEGSVLISFGDTKVICSASIEDRVPPFLRGQGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R RE+ G+ GR+ EIQR+IGRALRSVV+L LG R + +DCDVIQA Sbjct: 63 EYAMLPRATESRNIRESSKGKVTGRTMEIQRLIGRALRSVVNLDLLGERTVWVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180 DGGTRTA+ITGA+ A+ +++ + L +AAIS G+ G ++DLDY Sbjct: 123 DGGTRTASITGAFTAVALAFENLMEEGKL--EENPLTDFLAAISVGVASDGDILLDLDYS 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST DVD N VMT +G +VEVQG+ E ATFS+ ML++A++ I LI QK VI Sbjct: 181 EDSTADVDMNIVMTGTGQLVEVQGTGEEATFSRAEMNKMLDVAEEGIGKLIDKQKAVIG 239 >gi|282858123|ref|ZP_06267318.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455] gi|282584045|gb|EFB89418.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455] Length = 251 Score = 318 bits (815), Expect = 6e-85, Method: Composition-based stats. Identities = 116/233 (49%), Positives = 158/233 (67%), Gaps = 2/233 (0%) Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66 + + +R +++ R + YAEGSC++ G T +L TAT+E+KVP ++R GW+TAEY +L Sbjct: 13 RADALRPVTMERNWNVYAEGSCVISCGRTRVLCTATVEDKVPPFLRGQGKGWVTAEYSLL 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 PRST RV R++ GR GRSQEIQR+IGR+LR+ VDL ALG R + +DCDVIQADGGTR Sbjct: 73 PRSTMTRVPRDSTKGRINGRSQEIQRLIGRSLRAAVDLDALGERCVTLDCDVIQADGGTR 132 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 TA+ITGA+VAL D L+ + +L LK VAA+S G + G ++DL Y EDST + Sbjct: 133 TASITGAYVALVDALRWLRGQGAFEKL--PLKSPVAAVSVGKVRGQLLLDLCYEEDSTAE 190 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 VD N VM G +EVQG+ E FS++ ML+LA I +L+ LQ+ V+ Sbjct: 191 VDFNVVMNGQGDFIEVQGTGEGGVFSREEMAGMLDLASAGIHELMALQRHVLR 243 >gi|299822585|ref|ZP_07054471.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601] gi|299816114|gb|EFI83352.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601] Length = 248 Score = 317 bits (814), Expect = 6e-85, Method: Composition-based stats. Identities = 113/243 (46%), Positives = 159/243 (65%), Gaps = 3/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR + ++R+I L + + EGS L+ GDT ++ +A++EEKVP ++R GWI+ Sbjct: 1 MRHDGRNKGELRKIELIKDYLIHPEGSVLISTGDTKVICSASIEEKVPPFMRGEGKGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GGR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ Sbjct: 61 AEYAMLPRATTTRNIRESSKGKVGGRTMEIQRLIGRALRAVVDLDALGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179 ADGGTRTA+ITGA+VAL ++ + + +K +AA S G+L ++DL+Y Sbjct: 121 ADGGTRTASITGAFVALALAIEKLYQTVPLAKF--PIKDFLAATSVGILENEGAVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT +G VE+QG+ E ATFS+ ++ L K I L +Q++++ Sbjct: 179 IEDSAAEVDMNIVMTGAGQFVELQGTGEEATFSETDLQELITLGKKGIQALNIMQQEILG 238 Query: 240 NEV 242 + Sbjct: 239 AAL 241 >gi|205374390|ref|ZP_03227188.1| ribonuclease PH [Bacillus coahuilensis m4-4] Length = 247 Score = 317 bits (814), Expect = 6e-85, Method: Composition-based stats. Identities = 106/241 (43%), Positives = 153/241 (63%), Gaps = 3/241 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +++R +++ + EGS L+ G T ++ TA++EE+VP ++R GW+ Sbjct: 1 MRRNERKVDELRPVTIETDYLIHPEGSVLISIGQTKVICTASVEERVPPFMRGEGKGWVN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+I R+LR+VVDL+ALG R I IDCDVIQ Sbjct: 61 AEYSMLPRATEKRTIRESSKGKVTGRTMEIQRLISRSLRAVVDLTALGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + + K + ++AIS G+ I+DL Y Sbjct: 121 ADGGTRTASITGAFIAMTIAIDKI--SKEKKLPRFPVNDFLSAISVGIDREKTVILDLSY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST VD N VMT SG VEVQG+ E ATF+ +L++A+ +L+K QK+ + Sbjct: 179 DEDSTARVDMNVVMTGSGEFVEVQGTGEEATFTMSELQQLLSVAEKGNRELMKFQKEALG 238 Query: 240 N 240 Sbjct: 239 E 239 >gi|254439955|ref|ZP_05053449.1| ribonuclease PH [Octadecabacter antarcticus 307] gi|198255401|gb|EDY79715.1| ribonuclease PH [Octadecabacter antarcticus 307] Length = 235 Score = 317 bits (814), Expect = 7e-85, Method: Composition-based stats. Identities = 125/234 (53%), Positives = 170/234 (72%), Gaps = 4/234 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + MR IS+ V+++AEGSCL+K GDT +L TA+++E+VP +++N+ GW+T Sbjct: 1 MRPSGRTIDGMRPISIEIDVTRHAEGSCLIKCGDTQVLCTASIDERVPSFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA +G Q GR+QEIQR+IGR+LR+ +D ALG RQI+IDCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGIDRVALGERQIVIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL +Q + + + S L VAA+SCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMNAGDVI--SDPLLIPVAAVSCGIYAGQSVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS VD NFVMT ++E+Q SAE +TF++D AM++LA IA+L +Q Sbjct: 178 EDSEAGVDGNFVMTAD-KLIEIQMSAEGSTFTRDQMNAMMDLAHKGIAELTAVQ 230 >gi|38234421|ref|NP_940188.1| ribonuclease PH [Corynebacterium diphtheriae NCTC 13129] gi|61215954|sp|Q6NFN6|RNPH_CORDI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|38200684|emb|CAE50380.1| Putative ribonuclease PH [Corynebacterium diphtheriae] Length = 241 Score = 317 bits (814), Expect = 7e-85, Method: Composition-based stats. Identities = 105/239 (43%), Positives = 147/239 (61%), Gaps = 3/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR + +TR + GS LV+FG+T ++ TA++E VP + R++ GW+TA Sbjct: 6 RADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE++ G+ GR+ EI R+IGR+LR+ VDL LG I IDCDV+QA Sbjct: 66 EYAMLPAATAERNARESMRGKVKGRTHEISRLIGRSLRAAVDLDELGENTINIDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VAL D + +++ LK VAA+S G++ G +DL Y E Sbjct: 126 DGGTRTASITGAYVALADAIAVLKE--QGVVPGNPLKAAVAAVSVGVIDGQVCLDLPYEE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS DVD N +M VE+QG+ E TF +D +L+ A+ +L QK + Sbjct: 184 DSRADVDMNVIMQGD-RFVEIQGTGEHNTFDRDELAVILDFAQKGCQELFAAQKAALEQ 241 >gi|33592677|ref|NP_880321.1| ribonuclease PH [Bordetella pertussis Tohama I] gi|33601937|ref|NP_889497.1| ribonuclease PH [Bordetella bronchiseptica RB50] gi|61216026|sp|Q7VXY3|RNPH_BORPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61216032|sp|Q7WI90|RNPH_BORBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|33572323|emb|CAE41877.1| ribonuclease PH [Bordetella pertussis Tohama I] gi|33576375|emb|CAE33453.1| ribonuclease PH [Bordetella bronchiseptica RB50] gi|332382092|gb|AEE66939.1| ribonuclease PH [Bordetella pertussis CS] Length = 246 Score = 317 bits (814), Expect = 7e-85, Method: Composition-based stats. Identities = 118/237 (49%), Positives = 160/237 (67%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R SL R ++YAEGS LV+ G+TH+L TA++ EKVP +++ GW+TA Sbjct: 11 RPSGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R + +DCDV+QA Sbjct: 71 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQA 130 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVA D + + + ++ VAA+S G++ G ++DLDY E Sbjct: 131 DGGTRCASITGAWVAAADAVALLMQRGDL--AHNPIRDAVAAVSVGLVDGRAVLDLDYQE 188 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D N VMT SG VEVQG+ E ATF++ ML LA+ IA L++ Q++ + Sbjct: 189 DSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREAL 245 >gi|229918348|ref|YP_002886994.1| ribonuclease PH [Exiguobacterium sp. AT1b] gi|229469777|gb|ACQ71549.1| ribonuclease PH [Exiguobacterium sp. AT1b] Length = 249 Score = 317 bits (814), Expect = 8e-85, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 154/239 (64%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R+ +++R + + V+K+AEGS L+ GDT ++ TAT+EE+VP ++R K GWI Sbjct: 1 MR-DARRFDELRPVEIVPHVNKHAEGSVLISIGDTKVICTATVEERVPNFLRGKKQGWIN 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+TG+R RE+V G+Q GR+ EIQR+IGR+LRSVVDL LG R I +DCDVIQ Sbjct: 60 AEYAMLPRATGDRTVRESVRGKQSGRTMEIQRLIGRSLRSVVDLERLGERTIWVDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG + AL + + +K VAAIS G ++DLDY Sbjct: 120 ADGGTRTASITGGFCALVLAVDRLIRQGKLEDT--PIKEGVAAISVGRTD-ELVLDLDYL 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ +VD N VMT SG VEVQG+ E ATF+ ML LA+ I L K + + Sbjct: 177 EDAAAEVDMNVVMTASGRFVEVQGTGEEATFTLQEMNEMLALAQHGIESLFKTAEAALG 235 >gi|296114411|ref|ZP_06833065.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769] gi|295979172|gb|EFG85896.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769] Length = 242 Score = 317 bits (813), Expect = 8e-85, Method: Composition-based stats. Identities = 116/242 (47%), Positives = 164/242 (67%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R +S+ +++AEGS L++ G T +L A++E +VP ++R GW+T Sbjct: 1 MRPSGRAIDALRPVSIQTGFARHAEGSALIRMGGTEVLCAASIESRVPPFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA G+QGGR+ EIQR+I RALR+ +DL ALG I +DCDV+ Sbjct: 61 AEYGMLPRATHSRGPREAAKGKQGGRTHEIQRLIARALRAGIDLRALGEISITVDCDVLN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITGAWVAL L + + + + VAA+SCG+ ++DLDY Sbjct: 121 ADGGTRCAAITGAWVALRLALDGLVRAN--VIPALPITAQVAAVSCGLTGAGAVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DANFV+T++G IVE+QG+AE+A FSQ+ F ++ LA+ A L ++Q+D ++ Sbjct: 179 EDSNAVADANFVLTETGGIVEIQGTAEQAPFSQEQFNELMRLAQVGTAQLFEIQRDAVAQ 238 Query: 241 EV 242 V Sbjct: 239 AV 240 >gi|84514911|ref|ZP_01002274.1| ribonuclease PH [Loktanella vestfoldensis SKA53] gi|84511070|gb|EAQ07524.1| ribonuclease PH [Loktanella vestfoldensis SKA53] Length = 235 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 129/239 (53%), Positives = 168/239 (70%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ N+MR +++ V+ +AEGSCL+K G+TH+L TAT++++VP +++N+ GW+T Sbjct: 1 MRPSGRQINEMRNVTIETNVTMHAEGSCLIKCGNTHVLCTATIDDRVPPFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R++REA G Q GR+QEIQR+IGR+LR+ VD ALG RQII+DCDVIQ Sbjct: 61 AEYGMLPRATNTRMRREAKEG-QSGRTQEIQRLIGRSLRAGVDRVALGERQIIVDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG WVAL + + S L VAAISCG+ G ++DLDY Sbjct: 120 ADGGTRCASITGGWVALKLAVLKLMKTGQII--SDPLVDPVAAISCGIYAGQEVLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NFVMT G +VEVQ SAE ATFS+ +L LA+ +A+L LQ + Sbjct: 178 EDSEAGVDGNFVMTG-GRLVEVQMSAEGATFSRAQMDGLLGLAEKGVAELTALQLAAVR 235 >gi|15838106|ref|NP_298794.1| ribonuclease PH [Xylella fastidiosa 9a5c] gi|21759420|sp|Q9PD74|RNPH_XYLFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|9106537|gb|AAF84314.1|AE003980_6 ribonuclease PH [Xylella fastidiosa 9a5c] Length = 241 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 120/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGRQ + +R + + R + +AEGS LV FG+T ++ TA++E KVP+++RN GW+TA Sbjct: 5 RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R +REA G+Q GR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA Sbjct: 65 EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ +E + L G VAA+S G+ G P++DLDY E Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLEQRGQLKK--SPLIGAVAAVSVGIYRGMPVLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS D D N VM D G ++E+QG+AE+ F + +L LA+ A L +Q++ ++ Sbjct: 183 DSDCDTDMNVVMNDEGGVIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREALA 240 >gi|134097802|ref|YP_001103463.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338] gi|166228314|sp|A4F913|RNPH_SACEN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|133910425|emb|CAM00538.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338] Length = 251 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 155/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++ +RE+ +TR + GS LV+FG T +L A+++E VP W + GW+TA Sbjct: 3 RADGRSDDALREVRITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+V GR GGR+ EI R++GR+LR+ +DL+ALG I +DCDVIQA Sbjct: 63 EYAMLPSSTNTRSARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + + L +AA+S G++ G +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAITWL-SAAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD G +VEVQG+ E ATF++ M++ A ++L ++Q + ++ Sbjct: 182 DSRAEVDMNVVATDHGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALA 239 >gi|225874384|ref|YP_002755843.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196] gi|225793778|gb|ACO33868.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196] Length = 246 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 114/240 (47%), Positives = 158/240 (65%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R SGR+ ++MR + LT + EGS L++ G T +L AT+E+ VP W+RN+ GW+T Sbjct: 7 FRASGRRPDEMRPVKLTAGYTSMPEGSVLIEVGHTRVLCAATVEQGVPGWMRNSGRGWVT 66 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R RE+ G+ GGR+ EIQR+IGR+LR+VVD+ ALG R +I+DCDV+Q Sbjct: 67 AEYGMLPRATLTRTARESERGKVGGRTHEIQRLIGRSLRAVVDMQALGERTVILDCDVLQ 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA AL Q + + L+ VAA S G++ G ++DL Y Sbjct: 127 ADGGTRTAAITGACTALAIACQRLVKAGTL--KASPLRQLVAATSVGIVEGTTLLDLAYE 184 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N VMT+ G +VEVQ +AER F + M++ A+ I +L+ LQ+ + + Sbjct: 185 EDSQAEVDMNLVMTEDGGLVEVQATAERQAFPRARMMEMMDYAEKGIRELLALQRAAMES 244 >gi|302529720|ref|ZP_07282062.1| ribonuclease PH [Streptomyces sp. AA4] gi|302438615|gb|EFL10431.1| ribonuclease PH [Streptomyces sp. AA4] Length = 258 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++Q+RE+ LTR K+ GS LV+FG+T +L A++ E VP W + GW+TA Sbjct: 3 RKDGRNDDQLREVKLTRGFQKWPAGSVLVEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R REAV GR GGR+ EI R+IGR+LR+ +DL+ALG I+IDCDVIQA Sbjct: 63 EYAMLPSATNTRSDREAVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TG +VAL D + + +N+ Q L VAA+S G++ G +DL Y E Sbjct: 123 DGGTRTAAVTGGYVALADAITWL-GAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G ++EVQG+ E ATF++ ML+LA +L +LQK+ ++ Sbjct: 182 DSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDLALAGCEELTRLQKEALA 239 >gi|255029953|ref|ZP_05301904.1| ribonuclease PH [Listeria monocytogenes LO28] Length = 244 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 160/239 (66%), Gaps = 3/239 (1%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+AEY Sbjct: 1 GRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYS 60 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQADGG Sbjct: 61 MLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG 120 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDS 183 TRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y EDS Sbjct: 121 TRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNYVEDS 178 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 VD N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + ++V Sbjct: 179 AAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 237 >gi|257056884|ref|YP_003134716.1| ribonuclease PH [Saccharomonospora viridis DSM 43017] gi|256586756|gb|ACU97889.1| RNAse PH [Saccharomonospora viridis DSM 43017] Length = 258 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 161/239 (67%), Gaps = 1/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR ++Q+RE+ +TR ++ GS L++ G+T +L A++ E VP W + GW+T Sbjct: 2 VRVDGRDDDQLREVRITRGFQQWPAGSVLIEVGNTRVLCAASVVEGVPRWRNGSGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T R RE+V GR GGR+ EI R+IGR+LRS +DL+ALG I+IDCDVIQ Sbjct: 62 AEYSMLPSATHTRGDRESVKGRIGGRTHEISRLIGRSLRSCIDLAALGENTIVIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VAL D + + + + + L V+A+S G++ G +DL Y Sbjct: 122 ADGGTRTAAITGGYVALADAITWL-GAAGRLADPKPLSAAVSAVSVGVVDGRVRLDLPYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N V TD+G ++EVQG+ E ATF++ ML+LA+ A+L ++Q + ++ Sbjct: 181 EDSRAEVDMNVVATDAGTLIEVQGTGEGATFTRSTLDKMLDLAQAGCAELARIQAEALA 239 >gi|148272475|ref|YP_001222036.1| ribonuclease PH [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830405|emb|CAN01340.1| ribonuclease PH (tRNA nucleotidyltransferase) [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 245 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 120/238 (50%), Positives = 156/238 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+REI++ R S+ AEGS L+ FG T +L TA+ +VP W + GW+TA Sbjct: 7 RHDGRTADQLREITIERNWSEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG I+IDCDV+QA Sbjct: 67 EYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L+ + Q + LK VAA+S G++ G P++DL Y E Sbjct: 127 DGGTRTAAITGAYVALADALEWGREKKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N VMT SG VEVQG+AE A F + A+L+LA L LQ + Sbjct: 187 DVRAETDMNVVMTGSGSFVEVQGTAEGAPFDRAELDALLDLALGGGTTLTALQAQALG 244 >gi|59801347|ref|YP_208059.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090] gi|194098405|ref|YP_002001463.1| ribonuclease PH [Neisseria gonorrhoeae NCCP11945] gi|239998810|ref|ZP_04718734.1| putative ribonuclease PH [Neisseria gonorrhoeae 35/02] gi|240014274|ref|ZP_04721187.1| putative ribonuclease PH [Neisseria gonorrhoeae DGI18] gi|240016710|ref|ZP_04723250.1| putative ribonuclease PH [Neisseria gonorrhoeae FA6140] gi|240080902|ref|ZP_04725445.1| putative ribonuclease PH [Neisseria gonorrhoeae FA19] gi|240112738|ref|ZP_04727228.1| putative ribonuclease PH [Neisseria gonorrhoeae MS11] gi|240115487|ref|ZP_04729549.1| putative ribonuclease PH [Neisseria gonorrhoeae PID18] gi|240117781|ref|ZP_04731843.1| putative ribonuclease PH [Neisseria gonorrhoeae PID1] gi|240121837|ref|ZP_04734799.1| putative ribonuclease PH [Neisseria gonorrhoeae PID24-1] gi|240123337|ref|ZP_04736293.1| putative ribonuclease PH [Neisseria gonorrhoeae PID332] gi|240125585|ref|ZP_04738471.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-92-679] gi|240128040|ref|ZP_04740701.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-93-1035] gi|254493595|ref|ZP_05106766.1| ribonuclease PH [Neisseria gonorrhoeae 1291] gi|260440703|ref|ZP_05794519.1| ribonuclease PH [Neisseria gonorrhoeae DGI2] gi|268594653|ref|ZP_06128820.1| ribonuclease PH [Neisseria gonorrhoeae 35/02] gi|268597020|ref|ZP_06131187.1| ribonuclease PH [Neisseria gonorrhoeae FA19] gi|268598803|ref|ZP_06132970.1| ribonuclease PH [Neisseria gonorrhoeae MS11] gi|268601161|ref|ZP_06135328.1| ribonuclease PH [Neisseria gonorrhoeae PID18] gi|268603481|ref|ZP_06137648.1| ribonuclease PH [Neisseria gonorrhoeae PID1] gi|268681961|ref|ZP_06148823.1| ribonuclease PH [Neisseria gonorrhoeae PID332] gi|268684174|ref|ZP_06151036.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679] gi|268686430|ref|ZP_06153292.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035] gi|291044013|ref|ZP_06569729.1| ribonuclease PH [Neisseria gonorrhoeae DGI2] gi|293399206|ref|ZP_06643371.1| ribonuclease PH [Neisseria gonorrhoeae F62] gi|75432481|sp|Q5F840|RNPH_NEIG1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|226736920|sp|B4RL28|RNPH_NEIG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|59718242|gb|AAW89647.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090] gi|193933695|gb|ACF29519.1| putative ribonuclease PH [Neisseria gonorrhoeae NCCP11945] gi|226512635|gb|EEH61980.1| ribonuclease PH [Neisseria gonorrhoeae 1291] gi|268548042|gb|EEZ43460.1| ribonuclease PH [Neisseria gonorrhoeae 35/02] gi|268550808|gb|EEZ45827.1| ribonuclease PH [Neisseria gonorrhoeae FA19] gi|268582934|gb|EEZ47610.1| ribonuclease PH [Neisseria gonorrhoeae MS11] gi|268585292|gb|EEZ49968.1| ribonuclease PH [Neisseria gonorrhoeae PID18] gi|268587612|gb|EEZ52288.1| ribonuclease PH [Neisseria gonorrhoeae PID1] gi|268622245|gb|EEZ54645.1| ribonuclease PH [Neisseria gonorrhoeae PID332] gi|268624458|gb|EEZ56858.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679] gi|268626714|gb|EEZ59114.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035] gi|291012476|gb|EFE04465.1| ribonuclease PH [Neisseria gonorrhoeae DGI2] gi|291610620|gb|EFF39730.1| ribonuclease PH [Neisseria gonorrhoeae F62] gi|317164098|gb|ADV07639.1| ribonuclease PH [Neisseria gonorrhoeae TCDC-NG08107] Length = 242 Score = 316 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 113/234 (48%), Positives = 163/234 (69%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R+I +T + +GSCL++ G+T ++ TA+++E P ++ GW+TAEYGM Sbjct: 9 RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENAPPFLHGKNQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTALRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL + + S+ + VAA+S G++ G P++DLDY EDS Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILSENPILEAVAAVSAGVVNGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L++ Q++ +S Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLVALAQKGIGELLRYQQNALS 240 >gi|332188380|ref|ZP_08390105.1| ribonuclease PH [Sphingomonas sp. S17] gi|332011609|gb|EGI53689.1| ribonuclease PH [Sphingomonas sp. S17] Length = 238 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 124/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR I++ +++AEGS L+ FGDT +L TA++EE+VP ++R GW+T Sbjct: 1 MRPSGRMPDQMRPITIEPNFTRHAEGSVLIGFGDTKVLVTASVEERVPPFLRGKGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG RQI +DCDVIQ Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVCDLKALGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GAWVAL + + S ++ VAA+SCG+ G P++DLDY Sbjct: 121 ADGGTRTAAISGAWVALRMAVNKLMAEGKL--TSDPIRHKVAAVSCGIHQGTPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D DANFV+ ++GHI EVQ +AE AT+ ++ +L LA+ ++ Q+ I Sbjct: 179 EDSNADADANFVLIENGHIAEVQATAEHATYDEEALLRLLRLARMGCTEIFAAQERAIR 237 >gi|310817156|ref|YP_003965120.1| ribonuclease PH [Ketogulonicigenium vulgare Y25] gi|308755891|gb|ADO43820.1| ribonuclease PH [Ketogulonicigenium vulgare Y25] Length = 235 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 126/239 (52%), Positives = 167/239 (69%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ ++MR++++ VS++AEGSCL+K GDTH+L TA+L+ +VP +++N+ GW+T Sbjct: 1 MRPSGRKPDEMRKVTIETGVSRHAEGSCLIKMGDTHVLCTASLDARVPPFLKNSGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R+KREA G Q GR+QEIQR++GRALR+ VD ALG RQI IDCDVIQ Sbjct: 61 AEYGMLPRATHSRMKREAKDG-QSGRTQEIQRLVGRALRAGVDRVALGERQITIDCDVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITG WVAL + + +S L V+AISCG+ G ++DLDY Sbjct: 120 ADGGTRCAAITGGWVALRLAVNKLLKAG--VIISDPLSAPVSAISCGIYAGQALLDLDYP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD NF+MT +VE+Q SAE ATFS+ +L+LA A L Q + + Sbjct: 178 EDSEAGVDGNFIMTAD-RLVEIQMSAEGATFSRAQMDTLLDLATQGNAWLAAAQLEAVK 235 >gi|257783975|ref|YP_003179192.1| ribonuclease PH [Atopobium parvulum DSM 20469] gi|257472482|gb|ACV50601.1| ribonuclease PH [Atopobium parvulum DSM 20469] Length = 253 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 121/237 (51%), Positives = 160/237 (67%), Gaps = 4/237 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R +Q+R ++L R + K A+GSCLV FGDT +L AT+EE VP W R ++ GW+T Sbjct: 16 LRSYNRAWDQIRPVTLERNLMKNADGSCLVSFGDTRVLCAATIEEGVPAWRRASRAGWVT 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST R KRE + + GRS EI+R+IGR+LRSVVDL+ LG I +DCDV+Q Sbjct: 76 AEYAMLPASTNQRTKRERANRK--GRSMEIERLIGRSLRSVVDLNRLGEYTITLDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVALHD L + + L G VAAIS G++ G ++DLDY Sbjct: 134 ADGGTRTASITGAWVALHDALFSLVE--KDVLSRLPLTGQVAAISMGVVDGQVLLDLDYP 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS D+D N V T+SG I+EVQG+ E F ++ +L++ + IA L++LQ V Sbjct: 192 EDSHADIDMNLVGTESGQIIEVQGTGEGGPFDREKLNQLLDVGQAGIAHLVELQNQV 248 >gi|307294011|ref|ZP_07573855.1| ribonuclease PH [Sphingobium chlorophenolicum L-1] gi|306880162|gb|EFN11379.1| ribonuclease PH [Sphingobium chlorophenolicum L-1] Length = 238 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 123/237 (51%), Positives = 163/237 (68%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMREI++ + +AEGSCL+ FGDT +L TA++EEKVP ++R GW+T Sbjct: 1 MRPSGRAPDQMREITMEPGFTIHAEGSCLISFGDTRVLCTASIEEKVPPFLRGKGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI++DCDVIQ Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+G+WVAL + + ++ + VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAISGSWVALRIAVDKL--LASGALKEDPIVQKVAAISCGIYKGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS + DAN ++T G EVQ +AE AT+ ++ +L LA+ A + Q V Sbjct: 179 EDSNAEADANLILTGDGKFAEVQATAEGATYDEEELLRLLRLARIGCAQIFAAQDKV 235 >gi|258541167|ref|YP_003186600.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01] gi|256632245|dbj|BAH98220.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01] gi|256635302|dbj|BAI01271.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-03] gi|256638357|dbj|BAI04319.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-07] gi|256641411|dbj|BAI07366.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-22] gi|256644466|dbj|BAI10414.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-26] gi|256647521|dbj|BAI13462.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-32] gi|256650574|dbj|BAI16508.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653565|dbj|BAI19492.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-12] Length = 244 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGRQ +QMR I++ + +AEGS L++ G T +L TA++E +VP ++R GW+T Sbjct: 1 MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG I +DCDV+ Sbjct: 61 AEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLDALGEMSITLDCDVLN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGAWVAL L + + L+G VAA+SCG+ ++DLDY Sbjct: 121 ADGGTRCASITGAWVALRLALGKL--VATNVLPRLPLRGQVAAVSCGLTTEGAVLDLDYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ D NFV+T IVE+QG+AE A F++D F + LA+ + +L + Q + Sbjct: 179 EDSSASADTNFVLTADRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQMAAVE 237 >gi|227875768|ref|ZP_03993896.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243] gi|269977414|ref|ZP_06184386.1| ribonuclease PH [Mobiluncus mulieris 28-1] gi|306819041|ref|ZP_07452758.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239] gi|307700330|ref|ZP_07637370.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16] gi|227843710|gb|EEJ53891.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243] gi|269934330|gb|EEZ90892.1| ribonuclease PH [Mobiluncus mulieris 28-1] gi|304648234|gb|EFM45542.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239] gi|307614541|gb|EFN93770.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16] Length = 252 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 112/234 (47%), Positives = 155/234 (66%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +Q+R ++ EG+ L++ G+T +L A+L E VP W ++T GW+T Sbjct: 1 MRKDGRRIDQLRNMAFHLDWVSTPEGAVLIEAGNTRVLCCASLSEGVPRWRKDTGLGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+QEI R+IGR+LR+ VD +ALG I IDCDV+Q Sbjct: 61 AEYSMLPRATATRSTRESVKGKLGGRTQEISRLIGRSLRAGVDYTALGENTIEIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAW+ALH ++ E ++ F + LK V AIS G++ G +DL Y Sbjct: 121 ADGGTRTAAITGAWIALHRAIE--EGKTSGFIPGEPLKDSVCAISVGIIDGEARLDLPYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ED + D N VMT +G ++EVQG+AE FS++ +L+LA+ ADL + Q Sbjct: 179 EDVRAETDMNVVMTGTGKLIEVQGTAEGEPFSREDLSKLLDLAQGGCADLTRAQ 232 >gi|317124457|ref|YP_004098569.1| RNAse PH [Intrasporangium calvum DSM 43043] gi|315588545|gb|ADU47842.1| RNAse PH [Intrasporangium calvum DSM 43043] Length = 256 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 155/239 (64%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++ RE+ +TR +AEGS LV+FG T +L A+ E VP W++ GW+TA Sbjct: 11 RHDGRAPDETREVRITRGWLDHAEGSVLVEFGRTRVLCAASFTEGVPRWLKGRGTGWVTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D ALG I++DCDV+QA Sbjct: 71 EYAMLPRATNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDTKALGENTIVLDCDVLQA 130 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + +Q L G VAA+S G++ G ++DLDY E Sbjct: 131 DGGTRTAAITGAYVALADAIEDARARGLIAKGAQPLTGSVAAVSVGIVGGRAVIDLDYPE 190 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DST + D N VMT G +EVQG+AE F + +L LA ADL Q+ +++ Sbjct: 191 DSTAETDMNVVMTGDGRYIEVQGTAEGEPFDRALLDDLLELAAKGCADLTAAQRAALAS 249 >gi|293605635|ref|ZP_06688015.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553] gi|292816015|gb|EFF75116.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553] Length = 244 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +++R SL R ++YAEGS LVK GDTH+L TA++ EKVP +++ GW+TA Sbjct: 9 RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGDTHVLCTASVLEKVPPFLKGKGEGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA Sbjct: 69 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVA D + + + ++ VAA+S G++ G ++DLDY E Sbjct: 129 DGGTRCASITGAWVAAADAVALLMKRGDLAV--NPIRDAVAAVSVGLVQGRSVLDLDYQE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS D D N +MT SG VEVQG+ E ATF++ ML LA+ IA L++ Q+ + Sbjct: 187 DSACDADVNVIMTGSGAFVEVQGTGEGATFTRAELDTMLVLAEGGIASLVRAQRAAL 243 >gi|195953232|ref|YP_002121522.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1] gi|226736913|sp|B4U8T3|RNPH_HYDS0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|195932844|gb|ACG57544.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1] Length = 255 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 106/234 (45%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ +++R I + R + +AEGSCLV+FG+T ++ TA++ E VP +++ GWIT Sbjct: 1 MRKNNRKLDELRPIRIQRDFNIHAEGSCLVEFGNTRVICTASIAESVPPFLKGKNQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V+G+ GGR+ EIQRMIGRA+R+V+DL+ +G R I IDCDVIQ Sbjct: 61 AEYSMLPRATATRNMRESVTGKIGGRTHEIQRMIGRAMRAVIDLTKIGERTIWIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I GA++A+ D + + + K S ++ V A+S G++ ++DLD+ Sbjct: 121 ADGGTRTASIVGAFIAMTDAIIKLNE--QKLINSVPIRDTVGAVSVGIVNDRLMLDLDFE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDS VD V T +G +VE+ E AT+++ F AML+L + + + +LQ Sbjct: 179 EDSNAAVDMTIVATGNGEMVEIHSLGEEATYTRKEFEAMLDLGLESLKQIAELQ 232 >gi|254445470|ref|ZP_05058946.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235] gi|198259778|gb|EDY84086.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235] Length = 252 Score = 315 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 108/243 (44%), Positives = 150/243 (61%), Gaps = 4/243 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59 R GR+ + +REIS + A GS LV FGDT ++ A LE++VP W+R GW+ Sbjct: 6 RPDGRKCDALREISFQADFAANATGSVLVSFGDTKVICGAMLEKRVPGWMRAQNVSGGWL 65 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP ST +R +R+A G+Q GR EIQR+IGR+LR+V+DL L + +DCDV+ Sbjct: 66 TAEYSMLPYSTLDRKQRDASRGKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDCDVL 125 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA+ITGA++A +Q + D + +AA+S G+ G P++DL Y Sbjct: 126 QADGGTRTASITGAYLAARLAVQKLIDAGTL--KENPFRDSIAAVSVGIYEGEPVLDLPY 183 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED VD N VMT G VE+QG+ E ATFS+D ++ LAK I +L +Q ++ Sbjct: 184 IEDRDASVDFNVVMTGKGEFVELQGTGEEATFSEDELAKLIGLAKKGIKELSSMQAAFLT 243 Query: 240 NEV 242 + Sbjct: 244 QRL 246 >gi|238022211|ref|ZP_04602637.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147] gi|237866825|gb|EEP67867.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147] Length = 243 Score = 315 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 117/225 (52%), Positives = 162/225 (72%), Gaps = 2/225 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R +Q+R +++T +A+GS L+ G+T ++ TAT+++ VP ++R GW+TAEYGM Sbjct: 8 RAAHQLRPVAITPNFLPHADGSVLMVCGNTKVICTATVDDNVPPFLRGKNQGWVTAEYGM 67 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VDL+ LG RQI+IDCDVIQADGGT Sbjct: 68 LPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDLTLLGERQILIDCDVIQADGGT 127 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL +Q + D N + L G VAA+S GM+ G P++DLDY EDS Sbjct: 128 RTASITGAFVALQIAIQKLLD--NGTLPANPLIGSVAAVSAGMVNGVPLLDLDYPEDSGC 185 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 D D N VM ++ +I+E+QG+AE A FS A++ LA+ IA L Sbjct: 186 DSDVNIVMLNAENIIEIQGTAEGAAFSVAELNALIALAQQGIAQL 230 >gi|298345213|ref|YP_003717900.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063] gi|304390773|ref|ZP_07372725.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235274|gb|ADI66406.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063] gi|304325656|gb|EFL92902.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 257 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 113/237 (47%), Positives = 151/237 (63%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +Q+RE++L EG LV G+T +L +A+L E VP W +++ GW+TA Sbjct: 7 RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGFGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GR+ EI R+IGRALR+ VD +ALG I IDCDV+QA Sbjct: 67 EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAW+AL + D F + V AIS G++ P +DL Y E Sbjct: 127 DGGTRTASITGAWIALQRAIAVGRDSG--FIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS + D N VMT SG +VEVQG+AE A FS+ A+L+LA+ DL +LQ+ + Sbjct: 185 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAV 241 >gi|238927868|ref|ZP_04659628.1| ribonuclease PH [Selenomonas flueggei ATCC 43531] gi|238884288|gb|EEQ47926.1| ribonuclease PH [Selenomonas flueggei ATCC 43531] Length = 248 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 111/242 (45%), Positives = 154/242 (63%), Gaps = 5/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R+ +Q+R + + R +YA+GS L++ G T ++ AT+EE+VP +++ T GW+TA Sbjct: 3 RRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERVPFFLKGTGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP + R REAV G Q GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QA Sbjct: 63 EYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180 DGGTRTA++TGA+VAL + F ++ +VAA+S G+ P++DL Y Sbjct: 123 DGGTRTASVTGAFVALVEACASFYAKRGIF----PVRDYVAAVSVGINAENEPLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT +G VEVQG+ E F++ A+L+L + I LI QK + + Sbjct: 179 EDSAAMVDMNIVMTGAGAFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKVALGD 238 Query: 241 EV 242 + Sbjct: 239 VL 240 >gi|320106016|ref|YP_004181606.1| ribonuclease PH [Terriglobus saanensis SP1PR4] gi|319924537|gb|ADV81612.1| ribonuclease PH [Terriglobus saanensis SP1PR4] Length = 246 Score = 315 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 119/240 (49%), Positives = 155/240 (64%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R GR Q+R I LT AEGS L++ G+T +L AT+E VP W+RN+ GW+T Sbjct: 9 FRPGGRTAAQLRSIKLTPDYVATAEGSVLIEAGNTRVLCNATIEPSVPGWLRNSGKGWVT 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GGR+ EIQR+IGR+LRSVVDL ALG R II+DCDV+Q Sbjct: 69 AEYSMLPRATLTRTPRESERGKIGGRTHEIQRLIGRSLRSVVDLKALGERMIILDCDVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL L + LK VAA S G++ G ++DL Y Sbjct: 129 ADGGTRTAAITGACVALAMALDKLVAAGTL--PVSPLKQLVAATSVGIVDGNILLDLAYE 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS DVD N VMT+ G +VEVQ +AE T+++ A+L++A + +L+ Q+ V+ Sbjct: 187 EDSRADVDMNVVMTEDGGLVEVQATAEHNTYTRPQLDALLDIAASGVKNLLVHQRSVLKK 246 >gi|254819170|ref|ZP_05224171.1| ribonuclease PH [Mycobacterium intracellulare ATCC 13950] Length = 259 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 106/240 (44%), Positives = 156/240 (65%), Gaps = 1/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR + + GS L++FG T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GR+QEI R+IGR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAFVALADAVTYL-GAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D+ +VD N V TD+G +VEVQG+ E ATF + +L++A L Q++ ++ Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALAQP 242 >gi|292669539|ref|ZP_06602965.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541] gi|292648748|gb|EFF66720.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541] Length = 248 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 111/242 (45%), Positives = 157/242 (64%), Gaps = 5/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R+ +Q+R + + R +Y GS LV+ G T ++ AT+EE+VP +++ + GW+TA Sbjct: 3 RRDLRRTDQLRPVHIERGYQRYPAGSALVETGHTRVVCAATVEERVPFFLKGSGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP + R REAV GRQ GR+QEIQR+IGRALR+VVD+ LG R I IDCDV+QA Sbjct: 63 EYAMLPGAGAERTAREAVRGRQSGRTQEIQRLIGRALRAVVDMKVLGERTIHIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180 DGGTRTA++TGA+VAL + F ++ +VAA+S G+ G P++D+ Y Sbjct: 123 DGGTRTASVTGAFVALVEACATFYTKHGIF----PVRDYVAAVSVGIDTEGTPLLDICYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ VD N VMT +G VEVQG+ E +FS+ A+L+L + I +LI+ QK + Sbjct: 179 EDSSAMVDMNLVMTGAGEFVEVQGTGEGRSFSRAEMNALLDLGERGIRELIEHQKTALGE 238 Query: 241 EV 242 + Sbjct: 239 TL 240 >gi|119512637|ref|ZP_01631712.1| Ribonuclease PH [Nodularia spumigena CCY9414] gi|119462708|gb|EAW43670.1| Ribonuclease PH [Nodularia spumigena CCY9414] Length = 247 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 104/239 (43%), Positives = 147/239 (61%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ ++R IS +++A GS L KFGDT +L T ++ E VP ++ T GW+T+ Sbjct: 5 RPDGRQPYELRPISFHAGFTRFAPGSVLTKFGDTQILCTVSVSEGVPKFLAGTGKGWLTS 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE + + GR+QEIQR+IGR+LR+ +D ALG R + +D DV+QA Sbjct: 65 EYRMLPSSTQERQPRELL--KLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITG +VAL + + + L G VAAIS G+L G P +DL+Y E Sbjct: 123 DAGTRTAAITGGFVALAHAVGQL--LHSGVLERSPLCGQVAAISVGLLQGEPYLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D VD N VM + I+E+QG+AE ++S+ +L+ A+ I L+ Q++ I+ Sbjct: 181 DVGAAVDFNVVMNQNLGIIEIQGTAEEGSYSRTQLNQLLDFAEKGIQQLLIAQREAIAG 239 >gi|33597539|ref|NP_885182.1| ribonuclease PH [Bordetella parapertussis 12822] gi|61216028|sp|Q7W6C1|RNPH_BORPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|33573967|emb|CAE38285.1| ribonuclease PH [Bordetella parapertussis] Length = 250 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR + +R SL R ++YAEGS LV+ G+TH+L TA++ EKVP +++ GW+T Sbjct: 14 VRPAGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG R + +DCDV+Q Sbjct: 74 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGAWVA D + + + ++ VAA+S G++ G ++DLDY Sbjct: 134 ADGGTRCASITGAWVAAADAVALLMQRGDL--AHNPIRDAVAAVSVGLVDGRAVLDLDYQ 191 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N VMT SG VEVQG+ E ATF++ ML LA+ IA L++ Q++ + Sbjct: 192 EDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREAL 249 >gi|304438692|ref|ZP_07398630.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368341|gb|EFM22028.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 248 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 111/242 (45%), Positives = 154/242 (63%), Gaps = 5/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R+ +Q+R + + R +YA+GS L++ G T ++ AT+EE+VP +++ T GW+TA Sbjct: 3 RRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERVPFFLKGTGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP + R REAV G Q GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QA Sbjct: 63 EYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180 DGGTRTA++TGA+VAL + F ++ +VAA+S G+ P++DL Y Sbjct: 123 DGGTRTASVTGAFVALVEACASFYAKRGIF----PVRDYVAAVSVGINAENEPLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N VMT +G VEVQG+ E F++ A+L+L + I LI QK + + Sbjct: 179 EDSAAMVDMNIVMTGAGVFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKVALGD 238 Query: 241 EV 242 + Sbjct: 239 VL 240 >gi|254465231|ref|ZP_05078642.1| ribonuclease PH [Rhodobacterales bacterium Y4I] gi|206686139|gb|EDZ46621.1| ribonuclease PH [Rhodobacterales bacterium Y4I] Length = 224 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 118/224 (52%), Positives = 159/224 (70%), Gaps = 2/224 (0%) Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 +S+ +K+AEGSCL+K GDTH+L TAT+E++VP +I+ T GW+TAEYGMLPR+T R Sbjct: 1 MSIETGFTKHAEGSCLIKVGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRATNTR 60 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++REA SG+QGGR+ EIQR+IGRALR+ VD ALG RQI +DCDV+QADGGTR A+ITG Sbjct: 61 MRREASSGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGGTRCASITGG 120 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 WVAL + + + L V+A+SCG+ G P++DLDY EDS VD NF+M Sbjct: 121 WVALRLAVNKLMKAGDVHI--DPLLDPVSAVSCGIYAGQPVLDLDYPEDSEAGVDGNFIM 178 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 T SG ++EVQ SAE + FS+D +++LA +L ++QK Sbjct: 179 TGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTVELAEMQKAA 222 >gi|300867701|ref|ZP_07112346.1| ribonuclease PH [Oscillatoria sp. PCC 6506] gi|300334284|emb|CBN57518.1| ribonuclease PH [Oscillatoria sp. PCC 6506] Length = 243 Score = 315 bits (807), Expect = 4e-84, Method: Composition-based stats. Identities = 105/239 (43%), Positives = 154/239 (64%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ NQ+R IS R +K+A GS L + GDT +L T +++ VP +++ T GW+TA Sbjct: 5 RPDGRQPNQLRPISFQREFTKFATGSVLARSGDTQVLCTVSIQPGVPKFLQFTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LRS +D++ LG R II+D DV+QA Sbjct: 65 EYRMLPGATPQRQERELM--KLSGRTQEIQRLIGRSLRSCLDMNLLGERTIIVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG +VAL D L + Q + VAA+S G+L G P +DL+Y E Sbjct: 123 DAGTRTTSITGGFVALADALDKLVKNGELEQ--SPIVSQVAAVSVGLLEGEPFLDLNYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D +VD N VM ++ I+E+QG+AE +FS+ +L++A+ I +L++ Q+ + Sbjct: 181 DVAAEVDFNVVMKENLSIIEMQGTAEEGSFSRTQLNQILDVAEKGIKELLEFQRQALRT 239 >gi|296284093|ref|ZP_06862091.1| ribonuclease PH [Citromicrobium bathyomarinum JL354] Length = 237 Score = 315 bits (807), Expect = 4e-84, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR IS+ +K+AEGSCL+ FGDT +L TA++E VP W+R GW+T Sbjct: 1 MRPSGRAPDQMRAISIETGFTKHAEGSCLISFGDTRVLCTASVENSVPPWMRGKGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY MLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI +DCDVIQ Sbjct: 61 GEYSMLPRATHTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDMKKLGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+GAWVAL + ++ + + G +AAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAISGAWVALRLAIDGLKKSGAILE--DPITGKIAAISCGVYKGTPVLDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS+ D DANFV+ + G I EVQ +AE A + ++ +L LA+ ++ K Q + Sbjct: 179 EDSSADADANFVLIEGGKIAEVQATAEGAAYDEEALLRLLRLAQMGCGEIFKAQDAAVK 237 >gi|163840218|ref|YP_001624623.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209] gi|162953694|gb|ABY23209.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209] Length = 250 Score = 315 bits (807), Expect = 4e-84, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 162/239 (67%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R+IS+TR S AEGS L++FG+T +L T++L E VP W+R GW+T Sbjct: 10 LRADGRTADQLRDISITRGWSSQAEGSALIEFGNTRVLCTSSLTEGVPRWLRGEGRGWVT 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V G+ GGR+ EI R+IGR+LRS++D ALG I++DCDV+Q Sbjct: 70 AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL + ++ + +Q L VAA+S G++ P++DL Y Sbjct: 130 ADGGTRTAAITGAYVALAESIRFARENKLISATAQPLTDTVAAVSAGIIDTVPMLDLAYV 189 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D N V+T SG VEVQG+AE A F ++ A+L+LA A L ++Q++ + Sbjct: 190 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNQLDALLDLALLGTAQLAQIQRETLG 248 >gi|167720743|ref|ZP_02403979.1| ribonuclease PH [Burkholderia pseudomallei DM98] Length = 219 Score = 315 bits (807), Expect = 5e-84, Method: Composition-based stats. Identities = 118/221 (53%), Positives = 158/221 (71%), Gaps = 2/221 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR++ +TR +K+AEG+ LV+FGDT ++ TA++ E+VP ++R GW+TAEYGMLPR+T Sbjct: 1 MRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQADGGTRTA+I Sbjct: 61 HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQADGGTRTASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TGA+VA HD + + + +VAAIS G+ G P++DLDY EDS D D N Sbjct: 121 TGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGVFGGTPVLDLDYDEDSACDTDMN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 VMT +G VEVQG+AE A FS+ A+L+LA+ I +L+ Sbjct: 179 VVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELV 219 >gi|322436088|ref|YP_004218300.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9] gi|321163815|gb|ADW69520.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9] Length = 245 Score = 314 bits (806), Expect = 5e-84, Method: Composition-based stats. Identities = 115/238 (48%), Positives = 152/238 (63%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R R NQ+R +T EGS L++ G+T +L AT+E VP W+RN+ GW+T Sbjct: 6 FRPDNRTANQLRPTRITPGYVSTPEGSVLIEVGNTRVLCNATIETGVPGWMRNSGKGWVT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+ GGR+ EIQR+IGR+LR +VD+ ALG R II+DCDV+Q Sbjct: 66 AEYGMLPRATLTRSPREAEKGKIGGRTHEIQRLIGRSLRGIVDMRALGERTIILDCDVLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL L + + LK +AA S G++ G ++DL Y Sbjct: 126 ADGGTRTAAITGASVALAIALGKLVQAGTL--KASPLKQMIAATSVGIVDGNTLLDLAYE 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS VD N VM SG +VE Q +AE+ ++S+ ML+LA+ I DL+ LQ+ + Sbjct: 184 EDSRATVDMNVVMLASGGLVETQATAEKDSYSRQQLTEMLDLAEAGIRDLLILQQTAL 241 >gi|315656450|ref|ZP_07909339.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493009|gb|EFU82611.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 259 Score = 314 bits (806), Expect = 5e-84, Method: Composition-based stats. Identities = 113/237 (47%), Positives = 151/237 (63%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +Q+RE++L EG LV G+T +L +A+L E VP W +++ GW+TA Sbjct: 9 RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GR+ EI R+IGRALR+ VD +ALG I IDCDV+QA Sbjct: 69 EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAW+AL + D F + V AIS G++ P +DL Y E Sbjct: 129 DGGTRTASITGAWIALQCAIAVGRDSG--FIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS + D N VMT SG +VEVQG+AE A FS+ A+L+LA+ DL +LQ+ + Sbjct: 187 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAV 243 >gi|172058161|ref|YP_001814621.1| ribonuclease PH [Exiguobacterium sibiricum 255-15] gi|226736909|sp|B1YJW6|RNPH_EXIS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|171990682|gb|ACB61604.1| ribonuclease PH [Exiguobacterium sibiricum 255-15] Length = 250 Score = 314 bits (806), Expect = 5e-84, Method: Composition-based stats. Identities = 118/239 (49%), Positives = 155/239 (64%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL R ++ MR+I L V+K+AEGS L+ GDT +L TAT+EEKVP ++R +HGWI Sbjct: 1 MRLDQRAQSDMRKIQLETDVNKHAEGSVLISVGDTRVLCTATVEEKVPPFLRGKRHGWIN 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REAV G+Q GR+ EIQR+I RALRSVV+L LG R + IDCDV+Q Sbjct: 61 AEYAMLPRATAQRTGREAVRGKQTGRTMEIQRLISRALRSVVNLEKLGERTVWIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG ++AL + + +K +AA+S G + ++DL Y Sbjct: 121 ADGGTRTAAITGGFLALVLAVDGLIQSGKLTDT--PIKEGIAAVSVGKVGTELLLDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ DVD N VMT SG IVE+Q + E ATFS+ ML L + I +L+ + + Sbjct: 179 EDAAADVDLNLVMTSSGKIVELQATGEEATFSRKEMLDMLELGEKGIEELLHAAEQSLG 237 >gi|158335996|ref|YP_001517170.1| ribonuclease PH [Acaryochloris marina MBIC11017] gi|189043752|sp|B0CAB9|RNPH_ACAM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|158306237|gb|ABW27854.1| ribonuclease PH [Acaryochloris marina MBIC11017] Length = 239 Score = 314 bits (806), Expect = 6e-84, Method: Composition-based stats. Identities = 103/239 (43%), Positives = 150/239 (62%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R I R + +A GS L + G T +L T +++ VP ++ +T GW+TA Sbjct: 5 RPDGRQPDQLRPIRFHREYTHFAAGSVLAECGQTKVLCTVSVQPGVPRFLEDTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R +RE + + GR+QEIQR+IGR+LR+ +DL ALG R +++D DV+QA Sbjct: 65 EYRMLPGSTPERQRRELM--KLSGRTQEIQRLIGRSLRAALDLQALGERTLVVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG +VAL D + + Q ++ HVAA+S G+L G P +DL+Y E Sbjct: 123 DAGTRTTSITGGFVALVDAVNQLVSKGEIPQ--SPIRHHVAAVSVGLLEGQPFLDLNYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D VD N V T+ ++EVQG+AE T + ML+LA+ I LI+ Q+ +++ Sbjct: 181 DVGAAVDLNVVATEQLELLEVQGTAEEGTLPRPQLNQMLDLAEIGIQQLIEAQRQALAS 239 >gi|315655635|ref|ZP_07908533.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333] gi|315489699|gb|EFU79326.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333] Length = 257 Score = 314 bits (806), Expect = 6e-84, Method: Composition-based stats. Identities = 113/237 (47%), Positives = 151/237 (63%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +Q+RE++L EG LV G+T +L +A+L E VP W +++ GW+TA Sbjct: 7 RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V G+ GR+ EI R+IGRALR+ VD +ALG I IDCDV+QA Sbjct: 67 EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAW+AL + D F + V AIS G++ P +DL Y E Sbjct: 127 DGGTRTASITGAWIALQRAIAVGRDSG--FIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS + D N VMT SG +VEVQG+AE A FS+ A+L+LA+ DL +LQ+ + Sbjct: 185 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAV 241 >gi|309378698|emb|CBX22648.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 242 Score = 314 bits (806), Expect = 6e-84, Method: Composition-based stats. Identities = 116/234 (49%), Positives = 169/234 (72%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R+I +T R + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM Sbjct: 9 RAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VALH + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 129 RTASITGAFVALHIAVGKL--VSDGILTENPIREAVAAVSAGVVGGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VMT SG I+E+QG+AE A FS + ++ LA+ I +L++ Q++ +S Sbjct: 187 DSDVNIVMTTSGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240 >gi|300789523|ref|YP_003769814.1| ribonuclease PH [Amycolatopsis mediterranei U32] gi|299799037|gb|ADJ49412.1| ribonuclease PH [Amycolatopsis mediterranei U32] Length = 258 Score = 314 bits (806), Expect = 6e-84, Method: Composition-based stats. Identities = 112/238 (47%), Positives = 160/238 (67%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++Q+R+I +TR ++ GS L++FG+T +L A++ E VP W + GW+TA Sbjct: 3 RKDGRNDDQLRDIKITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+ EI R+IGR+LR+ +DL+ALG I+IDCDVIQA Sbjct: 63 EYAMLPSATNTRGDRESVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TG +VAL D + + +N+ Q L VAA+S G++ G +DL Y E Sbjct: 123 DGGTRTAAVTGGYVALADAITWL-SAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G ++EVQG+ E ATF++ ML++A A+L +LQ + ++ Sbjct: 182 DSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDMALAGCAELTRLQNEALA 239 >gi|294011052|ref|YP_003544512.1| ribonuclease PH [Sphingobium japonicum UT26S] gi|292674382|dbj|BAI95900.1| ribonuclease PH [Sphingobium japonicum UT26S] Length = 238 Score = 314 bits (805), Expect = 7e-84, Method: Composition-based stats. Identities = 122/237 (51%), Positives = 162/237 (68%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR+I++ + +AEGSCLV FGDT +L TA++EEKVP ++R GW+T Sbjct: 1 MRPSGRAPDQMRDITMEPGFTIHAEGSCLVSFGDTRVLCTASIEEKVPPFLRGKGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI++DCDVIQ Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+G+WVAL + + ++ + VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAISGSWVALRIAIDGL--LASGALAEDPIVQKVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS + DAN ++T G EVQ +AE AT+ ++ +L LA+ A + Q Sbjct: 179 EDSNAEADANLILTGDGKFAEVQATAEGATYDEEELLRLLRLARIGCAQIFAAQDKA 235 >gi|163797073|ref|ZP_02191028.1| molecular chaperone DnaK [alpha proteobacterium BAL199] gi|159177589|gb|EDP62142.1| molecular chaperone DnaK [alpha proteobacterium BAL199] Length = 243 Score = 314 bits (805), Expect = 7e-84, Method: Composition-based stats. Identities = 131/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +RE+ L +K+AEGSCLV+FGDTH+L TA++E++VP W++ GW+TA Sbjct: 8 RPSGRAVDALREVRLEPGFAKHAEGSCLVRFGDTHVLCTASVEDRVPPWLKGGGKGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRST R REA G+Q GR+QEIQR+IGR+LRSV DL ALG RQI +DCDVIQA Sbjct: 68 EYGMLPRSTHTRTDREAARGKQSGRTQEIQRLIGRSLRSVTDLVALGERQIRVDCDVIQA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG+WVALH + + S L VAAISCG+ G P++DLDY E Sbjct: 128 DGGTRTAAITGSWVALHQAMSTLLRFGAV--KSLPLTDKVAAISCGIYKGQPVLDLDYAE 185 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS + DANFV+T G IVE+Q +AE F + F +L LA+ I +L LQ++ ++ Sbjct: 186 DSNCETDANFVLTGRGGIVEIQATAEAEPFEEAAFHELLRLARKGIGELAVLQEEAVA 243 >gi|269836459|ref|YP_003318687.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745] gi|269785722|gb|ACZ37865.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745] Length = 246 Score = 314 bits (805), Expect = 8e-84, Method: Composition-based stats. Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +++R +++ + YAEGS L+ G+TH+L TAT+EE+VP ++ GW+TA Sbjct: 9 RPGGRANDELRPVTIQPGFAPYAEGSALITMGNTHVLCTATIEERVPPFLVGKGQGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPRS+ R+ RE GGR+QEIQR+IGR+LR+V L LG R I+IDCDV++A Sbjct: 69 EYGMLPRSSPQRIPRE--RSLTGGRTQEIQRLIGRSLRAVTKLDLLGERTILIDCDVLRA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG +VAL L+ + + L G+VAA+S G++ +DL+Y E Sbjct: 127 DGGTRTAAITGGYVALRLALERLVRTGQLKAV--PLTGYVAAVSVGVVWDEVRLDLEYEE 184 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N VMTD G IVEVQG+AE F + AML+LA+ + L++ QK +S+ Sbjct: 185 DSQAEVDCNVVMTDRGDIVEVQGTAEGKPFPRARLDAMLDLAERGVRQLVEYQKAALSSH 244 >gi|119715559|ref|YP_922524.1| ribonuclease PH [Nocardioides sp. JS614] gi|166228299|sp|A1SGA2|RNPH_NOCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|119536220|gb|ABL80837.1| RNAse PH [Nocardioides sp. JS614] Length = 242 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 157/238 (65%), Gaps = 2/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R I++TR +A GS LV+FG T +L A+ E VP W + + GW+TA Sbjct: 6 REDGRADDELRPITITRHWLDHAAGSVLVEFGRTRVLCAASAAEGVPRWRKGSGLGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+V GR GGR+ EI R+IGR+LR+++D ALG I +DCDV+QA Sbjct: 66 EYAMLPASTNTRSDRESVKGRIGGRTHEISRLIGRSLRAIIDYKALGENTIQLDCDVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++H+ + L G VAA+S G++ G P +DL Y E Sbjct: 126 DGGTRTAAITGAYVALADAVEHLRSTGAL--TGEPLTGSVAAVSVGIIDGVPRLDLPYVE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N VMT SG VEVQG+AE A F + A+L LA+ ADL +LQ++ +S Sbjct: 184 DVRAETDMNVVMTGSGKFVEVQGTAEGAAFDRAELDALLALAEKGCADLTRLQQEALS 241 >gi|94496905|ref|ZP_01303479.1| RNase PH [Sphingomonas sp. SKA58] gi|94423581|gb|EAT08608.1| RNase PH [Sphingomonas sp. SKA58] Length = 238 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 123/237 (51%), Positives = 160/237 (67%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR I++ + +AEGSCLV FGDT +L TA++EEKVP ++R GW+T Sbjct: 1 MRPSGRAPDQMRNITMEPGFTIHAEGSCLVSFGDTRVLCTASVEEKVPPFLRGKGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI++DCDVIQ Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRTVVDLKALGERQIVVDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+G+WVAL + + Q + VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTAAISGSWVALRIAVDKLLASGALTQ--DPIIQKVAAISCGIYNGTPVLDLDYA 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS + DAN ++T G EVQ +AE A + ++ +L LA+ A + Q Sbjct: 179 EDSNAETDANLILTGDGKFAEVQATAEGAAYDEEELLRLLRLARIGCAKIFAAQDAA 235 >gi|183984013|ref|YP_001852304.1| ribonuclease RphA [Mycobacterium marinum M] gi|183177339|gb|ACC42449.1| ribonuclease RphA [Mycobacterium marinum M] Length = 276 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+++++R + +TR ++ GS L++FG T ++ TA++ E VP W + + GW+TA Sbjct: 21 REDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVPRWRKGSGLGWLTA 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I +DCDV+QA Sbjct: 81 EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 140 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 141 DGGTRTAAITGAYVALADAVNYL-AAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 199 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+ E ATF + +L++A L Q+D ++ Sbjct: 200 DSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQRDALA 257 >gi|170782454|ref|YP_001710787.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus] gi|169157023|emb|CAQ02196.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus] Length = 245 Score = 313 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 119/238 (50%), Positives = 156/238 (65%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+REI++ R S+ AEGS L+ FG T +L TA+ +VP W + GW+TA Sbjct: 7 RHDGRTADQLREITIERDWSEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG ++IDCDV+QA Sbjct: 67 EYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTVVIDCDVLQA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D L+ + Q + LK VAA+S G++ G P++DL Y E Sbjct: 127 DGGTRTAAITGAYVALADALEWGRERKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + D N VMT SG VEVQG+AE A F + A+L+LA L LQ + Sbjct: 187 DVRAETDMNVVMTGSGSFVEVQGTAEGAPFDRAELDALLDLALGGGTTLTALQAQALG 244 >gi|145222946|ref|YP_001133624.1| ribonuclease PH [Mycobacterium gilvum PYR-GCK] gi|315443409|ref|YP_004076288.1| RNAse PH [Mycobacterium sp. Spyr1] gi|189043767|sp|A4T8F7|RNPH_MYCGI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145215432|gb|ABP44836.1| RNAse PH [Mycobacterium gilvum PYR-GCK] gi|315261712|gb|ADT98453.1| RNAse PH [Mycobacterium sp. Spyr1] Length = 260 Score = 313 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 159/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R +++TR + + GS LV+FG+T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVTITRGFTTHPAGSVLVEFGETRVMCTASVTEGVPRWRKGSGQGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPAATHDRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAFVALSDAVTYL-GAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYTE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VE+QG+ E ATF + ML+ A L ++Q+ + Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAALE 240 >gi|296129173|ref|YP_003636423.1| ribonuclease PH [Cellulomonas flavigena DSM 20109] gi|296020988|gb|ADG74224.1| ribonuclease PH [Cellulomonas flavigena DSM 20109] Length = 257 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 110/226 (48%), Positives = 150/226 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+ +++R +++TRR EGS LV+FG T +L A+ E VP W + + GW+T Sbjct: 1 MRKDGRRADELRPVTITRRFLDAGEGSVLVEFGGTKVLCVASFTEGVPRWRKGSGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V G+ GGR+ EI R++GR+LR+VVD++ALG I++DCDV+Q Sbjct: 61 AEYAMLPRATNSRSDRESVRGKVGGRTHEISRLVGRSLRAVVDVAALGENTIVLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + VL+ VAAIS G++ G P++DL Y Sbjct: 121 ADGGTRTAAITGAYVALADAVAWATTKRLVKPGRTVLRDSVAAISVGVVDGVPVLDLPYE 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED + D N V T +G VEVQG+AE A F + A+L+LA Sbjct: 181 EDVRAETDMNVVTTGAGAFVEVQGTAEHAPFDRAELDALLDLAVAG 226 >gi|319942267|ref|ZP_08016582.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B] gi|319804140|gb|EFW01040.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B] Length = 277 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 118/240 (49%), Positives = 157/240 (65%), Gaps = 2/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R + +TRR +KYAEGS L+ GDTH+L TA++ VP ++R GW+TA Sbjct: 35 RPDGRAVDALRPVEITRRFTKYAEGSVLMCAGDTHVLCTASVTVGVPNFLRGKGEGWVTA 94 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYG+LPRSTG R REA G+Q GR+QEIQR+IGR+LR+VVD LG I IDCDV+QA Sbjct: 95 EYGLLPRSTGTRTDREAARGKQTGRTQEIQRLIGRSLRAVVDRKKLGEHTIQIDCDVLQA 154 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAW+AL D + M + + V+A+S GM G P++DL+Y E Sbjct: 155 DGGTRCASITGAWIALRDAVDWM--LAKGMISEDPILAQVSAVSVGMWSGEPVLDLNYAE 212 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS D D N VMT +G VE+QG+AE FS+ +L LAK A+L Q+ ++ + Sbjct: 213 DSASDTDMNVVMTSAGKYVEIQGTAEGDPFSEGDLAKLLALAKKGNAELAAFQRKALTEK 272 >gi|159036643|ref|YP_001535896.1| ribonuclease PH [Salinispora arenicola CNS-205] gi|189043771|sp|A8M4I1|RNPH_SALAI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|157915478|gb|ABV96905.1| ribonuclease PH [Salinispora arenicola CNS-205] Length = 241 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R ++LTR S + EGS LV+FG T +L TA++ E VP W + + GW+TA Sbjct: 3 RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG +++DCDV+QA Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VAL+D + + + + V+ VAA+S G++ G P +DL+Y Sbjct: 123 DGGTRTAAITGAYVALYDAVTWLAARRSLAGRPENVMHRSVAAVSVGVVAGEPRLDLNYD 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+T +VD N V T +G VEVQG+ E FS+ A+L+LA DL + Q+ +S Sbjct: 183 EDATAEVDLNVVCTGTGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCLDLAEAQRKALS 241 >gi|148553491|ref|YP_001261073.1| ribonuclease PH [Sphingomonas wittichii RW1] gi|166228323|sp|A5V3R9|RNPH_SPHWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|148498681|gb|ABQ66935.1| RNAse PH [Sphingomonas wittichii RW1] Length = 238 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 120/237 (50%), Positives = 163/237 (68%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR +QMR IS+ + +AEGS L+ FGDT +L TA++EEKVP ++R GW+T Sbjct: 1 MRPSGRAPDQMRAISIETGFTVHAEGSVLISFGDTRVLVTASVEEKVPPFLRGKGQGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD++ LG RQI+IDCDV+Q Sbjct: 61 AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMAKLGERQIVIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G WVAL + + ++ + VAAISCG+ G P++DLDY Sbjct: 121 ADGGTRTASISGGWVALRLAVDKL--LASGAIAEDPITAQVAAISCGIHEGTPVLDLDYI 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS DANFV+ D+G+I E Q +AE AT+ ++ +L LA+ ++ Q+ Sbjct: 179 EDSNAHADANFVLLDNGNIAEAQATAEGATYDEEALLRLLRLARIGCGEIFAAQRKA 235 >gi|169628575|ref|YP_001702224.1| ribonuclease PH [Mycobacterium abscessus ATCC 19977] gi|226736919|sp|B1MLZ3|RNPH_MYCA9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|169240542|emb|CAM61570.1| Probable ribonuclease PH [Mycobacterium abscessus] Length = 258 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 114/238 (47%), Positives = 158/238 (66%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ++++R +++TR + + GS L++FG T ++ TA+ E VP W + + GW+TA Sbjct: 4 REDGRQDDELRPVTITRGFTSHPAGSVLIEFGQTRVMCTASATEGVPRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R RE+V GR GGR+QEI R+IGR+LR+ +DLSALG I IDCDV+QA Sbjct: 64 EYAMLPASTHTRSDRESVKGRVGGRTQEISRLIGRSLRACIDLSALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYLAAHG-KLADDEPLSCAIAAVSVGVVDGRVRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+ E ATF++ +L+ A L LQK+ ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFARSTLDKLLDAAVGAADQLFVLQKEALA 240 >gi|145593656|ref|YP_001157953.1| ribonuclease PH [Salinispora tropica CNB-440] gi|189043773|sp|A4X3X5|RNPH_SALTO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|145302993|gb|ABP53575.1| RNAse PH [Salinispora tropica CNB-440] Length = 241 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R ++LTR S + EGS LV+FG T +L TA++ E VP W + + GW+TA Sbjct: 3 RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I++DCDV+QA Sbjct: 63 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSIVLDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180 DGGTRTAAITGA+VALHD + + + + V+ VAA+S G++ G P +DL+Y Sbjct: 123 DGGTRTAAITGAYVALHDAVTWLAARRSLAGRPETVMHRSVAAVSVGVVAGEPRLDLNYA 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED++ +VD N V T +G VEVQG+ E FS+ A+L+LA +L + Q+ +S Sbjct: 183 EDASAEVDLNVVCTGAGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCVELAEAQRKALS 241 >gi|28493589|ref|NP_787750.1| ribonuclease PH [Tropheryma whipplei str. Twist] gi|28572785|ref|NP_789565.1| ribonuclease PH [Tropheryma whipplei TW08/27] gi|28410918|emb|CAD67303.1| ribonuclease PH [Tropheryma whipplei TW08/27] gi|28476631|gb|AAO44719.1| ribonuclease PH [Tropheryma whipplei str. Twist] Length = 256 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 106/238 (44%), Positives = 151/238 (63%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R + R +++R + + R + YAEGS L+ FG+T +L AT + VP ++R + GWIT Sbjct: 20 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRS R RE+V G+ GRS EI R+IGR++R+++D AL II+DCDV+Q Sbjct: 80 AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 139 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+++AL+D L ++ K L V+A+S G++ +DLDY Sbjct: 140 ADGGTRTAAITGSYIALYDALVWAKN--QKILSKHPLTDSVSAVSVGLVGDQIFLDLDYS 197 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N V T SG +VE+QG+AE++ FS F M+ LAK L ++Q + Sbjct: 198 EDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQAASL 255 >gi|169831661|ref|YP_001717643.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C] gi|226736902|sp|B1I4W9|RNPH_DESAP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|169638505|gb|ACA60011.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C] Length = 261 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 117/240 (48%), Positives = 163/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR QMR + +TR +KYAEGS L++ GDT ++ TA+++ +VP +++ GW+T Sbjct: 2 IRVDGRAPAQMRPVYITRHYNKYAEGSALIEVGDTRVICTASIDNRVPTFLKGAGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AE+GMLPR+TG R RE+V G GGRS EIQR+IGR+LR+VVDL ALG R +I+DCDVIQ Sbjct: 62 AEFGMLPRATGVRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VAL D +Q + + + +VAA S G+ G ++DL + Sbjct: 122 ADGGTRTAAITGGFVALVDAMQTL--VTEGVTPRLPVLDYVAATSVGLFEGEAVLDLCFA 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS +VD N VMT +G VEVQG+ E TF + +L+LA I L++ Q+ V+ + Sbjct: 180 EDSAAEVDFNVVMTGTGRFVEVQGTGEGTTFERADVDRLLDLAVVGIRSLVEQQRAVLGS 239 >gi|61216045|sp|Q83FT1|RNPH_TROWT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|61216046|sp|Q83HF6|RNPH_TROW8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase Length = 247 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 106/238 (44%), Positives = 151/238 (63%), Gaps = 2/238 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R + R +++R + + R + YAEGS L+ FG+T +L AT + VP ++R + GWIT Sbjct: 11 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 70 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRS R RE+V G+ GRS EI R+IGR++R+++D AL II+DCDV+Q Sbjct: 71 AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+++AL+D L ++ K L V+A+S G++ +DLDY Sbjct: 131 ADGGTRTAAITGSYIALYDALVWAKN--QKILSKHPLTDSVSAVSVGLVGDQIFLDLDYS 188 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D N V T SG +VE+QG+AE++ FS F M+ LAK L ++Q + Sbjct: 189 EDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQAASL 246 >gi|86159780|ref|YP_466565.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-C] gi|123496476|sp|Q2IEX1|RNPH_ANADE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|85776291|gb|ABC83128.1| RNAse PH [Anaeromyxobacter dehalogenans 2CP-C] Length = 239 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 125/241 (51%), Positives = 166/241 (68%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +R I L RVSK+AEGSCLV+FGDTH+L TA+++EKVP + T GW+T Sbjct: 1 MRKNGRGPLDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA G+Q GR+ EIQR++GRALR+ VDL A+G R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL ++ ++ K +K VAA+S G++ G +DLDY Sbjct: 121 ADGGTRTAAITGAYVALVQAVRSIQK--RKQLAHDPVKRSVAAVSVGIVAGEVHLDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST +VD N V T G +VEVQG+AE F++ ML+ A ++ L +LQ+ + Sbjct: 179 EDSTAEVDMNVVATGEGALVEVQGTAEGKPFARAELDRMLDAALAGLSRLKELQEAALRT 238 Query: 241 E 241 Sbjct: 239 P 239 >gi|260654137|ref|ZP_05859627.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1] gi|260631122|gb|EEX49316.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1] Length = 250 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 162/239 (67%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R +GR +R+ISLT V+++AEGSCLV++G+T +L TA+++ KVP ++R + GW+T Sbjct: 6 LRNNGRGACDLRKISLTLDVNRWAEGSCLVEWGETKVLCTASVDNKVPPFLRGSGQGWVT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R RE+V GRQ GRS EI R+IGR+LR+ VDL+ LG + +DCDV+Q Sbjct: 66 AEYAMLPRATSSRTVRESVKGRQSGRSMEISRLIGRSLRASVDLAQLGELTVTLDCDVLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA++AL ++ + + + + VAA+S G + G + DLDY Sbjct: 126 ADGGTRTASITGAFLALAGAVRSL--IAGGRIAASPFRMPVAAVSIGKVDGQILTDLDYS 183 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N V +G +E+QG+ E TFS+ +L+ ++ +A + +LQ+ + Sbjct: 184 EDSRAEVDFNVVGNGNGVFIELQGTGEGGTFSRSELNELLDCGENALAQITELQRKTMG 242 >gi|332295803|ref|YP_004437726.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796] gi|332178906|gb|AEE14595.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796] Length = 241 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 103/240 (42%), Positives = 157/240 (65%), Gaps = 3/240 (1%) Query: 1 MRLSG-RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59 MRL R+ +++R I + + Y EGS L+ FG+T ++ A++E+KVP +++ + GWI Sbjct: 1 MRLDKSRKNDELRHIEIIKDFLIYPEGSVLISFGNTKVICNASVEDKVPPFLKGSGSGWI 60 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T+EY M+PR+T +R RE+ SG+ GR+QEIQR+IGR+LRS VDLS LG R I ID +VI Sbjct: 61 TSEYSMIPRATQDRNVRESTSGKISGRNQEIQRIIGRSLRSAVDLSLLGERTIYIDAEVI 120 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A+ITG +VAL L+ +++ + LK +VAA+S +L I+D ++ Sbjct: 121 QADAGTRCASITGGFVALVLALRKLKEYG--LIKTSPLKYYVAAVSVAVLNDEVILDPNF 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED DVD N + ++ I+E+QG+AE+ FS++ +L +A I +I +QK V+ Sbjct: 179 EEDVIADVDLNIIANENREIIEIQGTAEKKPFSKEKLNEILYIAYSGIEKIIAIQKKVLK 238 >gi|300087418|ref|YP_003757940.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527151|gb|ADJ25619.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 240 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 153/239 (64%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR N MR +++T +A+GS L++ G T ++ + ++EE+VP ++RN+ GW+TA Sbjct: 3 RIDGRAANAMRPVTITPGFQAFADGSVLIEQGKTRVICSVSMEERVPAFLRNSGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T +R RE+V G+ GRSQEIQR+IGR+LR+V DLSALG R ++DCDVIQA Sbjct: 63 EYAMLPRATTSRTPRESVKGKVSGRSQEIQRLIGRSLRAVTDLSALGERSFVVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITG +VAL+ L + L+ VAAIS M ++D Y E Sbjct: 123 DAGTRTAAITGGYVALYLALNKLFRLG--VFKEMPLRAQVAAISVVMRQNNLLLDPVYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D D N VM G +E+QG+AE+ F ++ A+L LA+ I L ++Q+ ++ Sbjct: 181 DCGADADFNLVMNSKGEFLEIQGTAEQRPFKRNTLDAVLGLAEKGIGQLFEIQQTTLAG 239 >gi|330859984|emb|CBX70312.1| ribonuclease PH [Yersinia enterocolitica W22703] Length = 239 Score = 312 bits (799), Expect = 3e-83, Method: Composition-based stats. Identities = 116/230 (50%), Positives = 155/230 (67%), Gaps = 2/230 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R Q+R ++LTR +K+AEGS LV+FGDT +L TAT+EE VP +++ GWIT Sbjct: 1 MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST +R REA G+QGGR+ EIQR+I R+LR+ VDL LG I +DCDV+Q Sbjct: 61 AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GA VAL D L + + +KG VAA+S G++ G + DL+Y Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 EDS + D N VM + G ++EVQG+AE FS + +L LA+ I + Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETI 228 >gi|326403855|ref|YP_004283937.1| ribonuclease PH [Acidiphilium multivorum AIU301] gi|325050717|dbj|BAJ81055.1| ribonuclease PH [Acidiphilium multivorum AIU301] Length = 243 Score = 312 bits (799), Expect = 4e-83, Method: Composition-based stats. Identities = 117/237 (49%), Positives = 162/237 (68%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R++ + S++AEGS L++ G T +L A++E +VP ++R GW+TA Sbjct: 6 RPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD +ALG I +DCDV+ A Sbjct: 66 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR AAITGAWVAL ++ + + + L G VAA+SCG+ G P++DLDY E Sbjct: 126 DGGTRCAAITGAWVALALAIRTLRKAN--VIATDPLIGQVAAVSCGVFGGVPVLDLDYAE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS + DANFV+T +G IVE+Q +AERATF + F +L LA+ A+L Q+ + Sbjct: 184 DSNAEADANFVLTGTGGIVEIQATAERATFEEATFGTLLGLARKGTAELFTAQRAAL 240 >gi|330991184|ref|ZP_08315137.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1] gi|329761770|gb|EGG78261.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1] Length = 253 Score = 312 bits (799), Expect = 4e-83, Method: Composition-based stats. Identities = 114/242 (47%), Positives = 160/242 (66%), Gaps = 2/242 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR + +R + + +++AEGS L++ G T +L A++E +VP ++R GW+T Sbjct: 12 MRPSGRATDALRPVFIQTGFARHAEGSALIRMGGTEVLCAASVETRVPSFLRGKGQGWVT 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R REA GRQ GR+QEIQR+I R+LR+V DL ALG I +DCDV+ Sbjct: 72 AEYGMLPRATHSRGPREAAKGRQSGRTQEIQRLIARSLRAVTDLRALGEISITVDCDVLN 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AAITGAWVAL L+ + + LKG VAA+SCG+ ++DLDY Sbjct: 132 ADGGTRCAAITGAWVALRLALETLVRAGTL--PAVPLKGQVAAVSCGLTQEGAVLDLDYA 189 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST D+NFV+T G IVE+QG+AE+ F++ F ++ LA+ A+L ++Q + Sbjct: 190 EDSTARADSNFVLTADGGIVEIQGTAEQDPFTEAQFNTLMRLARTGTAELFRIQTATVEE 249 Query: 241 EV 242 + Sbjct: 250 AL 251 >gi|114571545|ref|YP_758225.1| ribonuclease PH [Maricaulis maris MCS10] gi|122314919|sp|Q0AKA6|RNPH_MARMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|114342007|gb|ABI67287.1| RNAse PH [Maricaulis maris MCS10] Length = 238 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 164/240 (68%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR + MREI L VS YAEGSCL +FG TH+L TA++EE VP W+R GW+T Sbjct: 1 MRPHGRARDAMREIKLEAGVSVYAEGSCLARFGGTHVLCTASIEESVPPWMRGGGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDV+Q Sbjct: 61 AEYGMLPRATHTRSRREATAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITIDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL ++ + S + G +AAISCG++ G +DL+Y Sbjct: 121 ADGGTRTAAITGAWVALKQATGYLIE--EGLLTSDPVHGQLAAISCGVIDGETRLDLEYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + DANFV+TD+G IVE+Q +AE + F + LAK + DL + Q + Sbjct: 179 EDRRAEADANFVLTDTGGIVEIQATAEDKPIPETDFDLLFALAKAGVVDLCEAQLAALKG 238 >gi|315924264|ref|ZP_07920488.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622425|gb|EFV02382.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 247 Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 156/238 (65%), Gaps = 3/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N+ R + R +K+A GS L+ GDT ++ TA EE VP ++R GW+TA Sbjct: 10 RQDGRFYNEGRPTQVMRHFTKHAHGSVLMAVGDTKVICTAMCEETVPGFMRGEGRGWVTA 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +R+ +G+ GRS EIQR+IGR+LR+V+D+ LG R I IDCDVIQA Sbjct: 70 EYSMLPSATETRKRRD-RNGKTDGRSVEIQRLIGRSLRAVMDMETLGERTIRIDCDVIQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT AITGA++AL DC+ + D ++G VAA S G+ G PI+DL Y E Sbjct: 129 DGGTRTTAITGAFIALWDCVASLLDSG--MIEKNPIRGFVAATSVGVWQGTPILDLCYLE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N VMTD G I+E+QG+ E F++D F ++ L +D IA LI +QKDV+ Sbjct: 187 DSHAEVDMNLVMTDDGRIIEIQGTGEARPFTRDEFDRLMALGQDGIAHLIAVQKDVLG 244 >gi|118467865|ref|YP_889156.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155] gi|166228292|sp|A0R1W8|RNPH_MYCS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|118169152|gb|ABK70048.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155] Length = 259 Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats. Identities = 110/237 (46%), Positives = 156/237 (65%), Gaps = 1/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR + + GS LV+FG T ++ TA++ E VP W + + GW+TA Sbjct: 4 REDGRLDDELRPVVITRGFTSHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GGR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPAATHDRSDRESVKGRIGGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + + + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALSDAVTWL-AAAGRLSDPRPLSCAIAAVSVGVVDGRVRVDLPYSE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS +VD N V TD+G +VE+QG+ E ATF + ML+ A L LQ++ + Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAALGATEQLFVLQREAL 239 >gi|182416017|ref|YP_001821083.1| ribonuclease PH [Opitutus terrae PB90-1] gi|177843231|gb|ACB77483.1| ribonuclease PH [Opitutus terrae PB90-1] Length = 260 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 105/241 (43%), Positives = 148/241 (61%), Gaps = 4/241 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59 R GR +Q+R I+ ++ YA GS LV FG T ++ A +E KVP+W+R GW+ Sbjct: 17 RSDGRHPDQLRPITFEANIAPYATGSVLVSFGSTRVICAAMIEPKVPLWMRQQGVRGGWL 76 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP ST +R R+ G+ GR+ EIQR+IGR+LR+VVDL LG + IDCDV+ Sbjct: 77 TAEYSMLPYSTLDRKPRDISKGKLDGRTVEIQRLIGRSLRAVVDLMKLGENTLWIDCDVL 136 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA+ITGA++A +Q + D + VAA+S G+ G ++DL+Y Sbjct: 137 QADGGTRTASITGAYLATRLAVQRLVDAGKL--AENPVLDSVAAVSAGVCGGQELLDLNY 194 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED +VDAN VMT G VE+Q S E ATF+ + ++ LA+ + ++ LQ ++ Sbjct: 195 VEDKDAEVDANIVMTGRGQFVEMQSSGEEATFTHEQLLSLTALAQKGLKEIAALQTAFLT 254 Query: 240 N 240 Sbjct: 255 K 255 >gi|332711140|ref|ZP_08431074.1| RNAse PH [Lyngbya majuscula 3L] gi|332350122|gb|EGJ29728.1| RNAse PH [Lyngbya majuscula 3L] Length = 234 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 103/234 (44%), Positives = 149/234 (63%), Gaps = 4/234 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R RQ +Q+R I R ++YA GS L G+T +L T T++E+VP ++++T GW+TA Sbjct: 5 RPDNRQPDQLRPILFEREFTRYAPGSVLAHCGETKVLCTVTVQEEVPRFLKDTGSGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ VDL ALG R + +D DVIQA Sbjct: 65 EYRMLPGATPERQRRELL--KLSGRTQEIQRLIGRSLRAAVDLKALGERTLTVDADVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG +VAL D + + L VAA+S G+L G P +DL+Y E Sbjct: 123 DAGTRTTSITGGYVALVDAVDKLVKTG--VLERSPLIHQVAAVSVGLLEGEPFLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D +VD N VM D I+EVQG+AE +++ +++LA+ I +L++ Q+ Sbjct: 181 DVAAEVDFNVVMNDEMGIIEVQGTAESGAYTRHQLNQLIDLAEKGIKELLEAQR 234 >gi|88856298|ref|ZP_01130957.1| ribonuclease PH [marine actinobacterium PHSC20C1] gi|88814382|gb|EAR24245.1| ribonuclease PH [marine actinobacterium PHSC20C1] Length = 255 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 113/233 (48%), Positives = 155/233 (66%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ N++R++++ R S AEGS L+ FG T +L TA+ VP W+ GW+TA Sbjct: 3 RHDGRENNELRKVTIERGWSDQAEGSALISFGKTKVLCTASFTNGVPRWMAGKGKGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST +R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG I+IDCDV+QA Sbjct: 63 EYSMLPRSTNSRMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D ++ + + S+ L +AA+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAIEWGREKKFIGKNSKALFDSLAAVSVGIIDGEPMLDLAYVE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + D N V+T G VEVQG+AE A F + ++L+LA DL +Q Sbjct: 183 DVRAETDMNVVVTGRGLFVEVQGTAEGAPFDRRELDSLLDLALAGAVDLTAMQ 235 >gi|329119666|ref|ZP_08248347.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327464263|gb|EGF10567.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 241 Score = 311 bits (797), Expect = 7e-83, Method: Composition-based stats. Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R + +T +A+GS L++ G+T ++ TA+++E VP ++R GWITAEYGM Sbjct: 9 RAADALRPVRITPHFLPHADGSALIECGNTRVICTASIDENVPPFLRGQGQGWITAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP +T R +REA +G+Q GR+QEIQR+IGR+LR+ DL LG RQI+IDCDVIQADGGT Sbjct: 69 LPAATATRSRREAAAGKQSGRTQEIQRLIGRSLRAAADLQKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL ++ + S+ L +AA+S G++ G P++DLDY EDS Sbjct: 129 RTASITGAYVALALAVRKL--LSDGLIAENPLVSQIAAVSAGIVGGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VM +G I+E+QG+AE A FS A+L LA+ I +L+ QK ++ Sbjct: 187 DSDVNIVMNGAGGIIEIQGTAEGAPFSPAELAALLRLAQKGIGELMAEQKRALA 240 >gi|187734903|ref|YP_001877015.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835] gi|187424955|gb|ACD04234.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835] Length = 270 Score = 311 bits (797), Expect = 7e-83, Method: Composition-based stats. Identities = 109/242 (45%), Positives = 149/242 (61%), Gaps = 4/242 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59 R R +Q+R IS ++ A S LV FG T ++ T+EE VP W++ + GW+ Sbjct: 12 RQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWL 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP ST +R +R+ +G+ GRS EIQR+IGR+LR+ VDL +G R I +DCDV+ Sbjct: 72 TAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCDVL 131 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA+ITGA VAL + + +K V+A+S G+L G ++DL Y Sbjct: 132 QADGGTRTASITGASVALAIAVNKLVAEGKL--AESPMKRLVSAVSVGILEGEALLDLCY 189 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED +VD N VMTD G VEVQGS E A F+ D ML L + + ++ +LQ+ VI+ Sbjct: 190 VEDKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQRQVIA 249 Query: 240 NE 241 E Sbjct: 250 EE 251 >gi|187478429|ref|YP_786453.1| ribonuclease PH [Bordetella avium 197N] gi|115423015|emb|CAJ49545.1| ribonuclease PH [Bordetella avium 197N] Length = 244 Score = 310 bits (796), Expect = 8e-83, Method: Composition-based stats. Identities = 115/237 (48%), Positives = 158/237 (66%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + +R SL R ++YAEGS LV G+T +L TA++ EKVP +++ GW+T Sbjct: 8 LRADGRAVDTLRAFSLKRGFTRYAEGSVLVVAGNTQVLCTASVLEKVPPFLKGKGEGWVT 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL ALG R + +DCDV+Q Sbjct: 68 AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLHLDCDVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITGAWVA D + + + ++ HVAA+S G++ G ++DL+Y Sbjct: 128 ADGGTRCASITGAWVAAADAVALLME--RGLLTQNPIRDHVAAVSVGLVGGRAVLDLNYE 185 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS + D N +MT +G VEVQG+ E ATF++ ML LA+ IA L+ Q+ Sbjct: 186 EDSACEADVNVIMTGAGAFVEVQGTGEEATFTRAQLDTMLTLAEGGIAKLVAEQRAA 242 >gi|119493583|ref|ZP_01624247.1| ribonuclease PH [Lyngbya sp. PCC 8106] gi|119452573|gb|EAW33756.1| ribonuclease PH [Lyngbya sp. PCC 8106] Length = 241 Score = 310 bits (796), Expect = 8e-83, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 148/240 (61%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL R+ +Q+R + ++Y+ S L K G+T ++ T++ VP +++++ GW+TA Sbjct: 5 RLDDRKPDQLRPVHFELNYTRYSSASVLTKCGNTQVICNVTIQPGVPNFLKDSGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+QEIQR+IGR+LR+ VDL LG + +IID DV+QA Sbjct: 65 EYRMLPGATQQRHSRELM--KLSGRTQEIQRLIGRSLRAAVDLKVLGEKTVIIDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITG +VAL + + D + + +AAIS G+L G P +DL+Y E Sbjct: 123 DAGTRTASITGGFVALANAFNKLVDKGELEK--SPISHQIAAISVGLLEGEPYLDLNYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D DVD N VM D ++E+QG+AE +F++ +++ A+ I L++ Q + ++ Sbjct: 181 DVAADVDCNIVMNDQLGMIELQGTAEAESFTRQQLNKIMDYAEIGIKQLLEAQNQALKSD 240 >gi|320530746|ref|ZP_08031790.1| ribonuclease PH [Selenomonas artemidis F0399] gi|320137033|gb|EFW28971.1| ribonuclease PH [Selenomonas artemidis F0399] Length = 248 Score = 310 bits (796), Expect = 8e-83, Method: Composition-based stats. Identities = 107/242 (44%), Positives = 153/242 (63%), Gaps = 5/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R+ +Q+R + + R +Y GS L++ G T ++ +AT+EE+VP +++ + GW+TA Sbjct: 3 RRDLRRPDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSATVEERVPFFLKGSGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP + R REA GRQ GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QA Sbjct: 63 EYAMLPGAGTERTAREAARGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180 DGGTRTA+ITGA+VAL + F ++ + AA+S G+ P++D+ Y Sbjct: 123 DGGTRTASITGAFVALVEACATFYTKRGVF----PVRDYAAAVSVGIGAENTPLLDICYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED+ VD N VMT +G +EVQG+ E FS+ A+L+L + I +LI +QK + Sbjct: 179 EDAQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRALGE 238 Query: 241 EV 242 + Sbjct: 239 TL 240 >gi|317050733|ref|YP_004111849.1| ribonuclease PH [Desulfurispirillum indicum S5] gi|316945817|gb|ADU65293.1| ribonuclease PH [Desulfurispirillum indicum S5] Length = 244 Score = 310 bits (796), Expect = 8e-83, Method: Composition-based stats. Identities = 108/242 (44%), Positives = 152/242 (62%), Gaps = 3/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +++R I++TR +KYAEGS L+ G+T +L AT+++ VP ++ GW+T Sbjct: 1 MRT-QRAPHELRPITITRNYTKYAEGSVLIAMGETIVLCNATVQKTVPRFLIGKDSGWVT 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ GR GR+ EIQR+IGR+LRS++DL A+ I IDCDV+Q Sbjct: 60 AEYSMLPRATDVRNRRESQQGRPSGRTMEIQRLIGRSLRSIIDLHAMSGYTITIDCDVLQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A++ GA++AL D + M + L+ VAAIS G+ +P+ DLDY Sbjct: 120 ADGGTRCASVNGAFIALADAVDSM--LAAGMIGESPLRSTVAAISVGIFNNWPLADLDYL 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS VD N V T G VE+QG+ E FS+ +L LA D I + LQ + +S Sbjct: 178 EDSQAMVDMNVVATGKGEFVEIQGTGESRPFSRKDHDILLELALDGIGQISALQFEQLSA 237 Query: 241 EV 242 ++ Sbjct: 238 QI 239 >gi|58039735|ref|YP_191699.1| ribonuclease PH [Gluconobacter oxydans 621H] gi|58002149|gb|AAW61043.1| Ribonuclease PH [Gluconobacter oxydans 621H] Length = 240 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 117/239 (48%), Positives = 158/239 (66%), Gaps = 7/239 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR ++ R +S+ +++AEGS L++ G T +L TAT+E++VP ++RN GWITA Sbjct: 8 RPSGRAPDENRIVSIETGFARHAEGSALIRVGGTEVLCTATIEDRVPPFLRNKGQGWITA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T +R +REA G+Q GR+QEIQR+I R+LR+ VDL +G R I +DCDV+ A Sbjct: 68 EYGMLPRATHSRGQREAAKGKQSGRTQEIQRLIARSLRACVDLKKIGERTITLDCDVLNA 127 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVAL L K + SQ L VAA+SCG+ ++DLDY E Sbjct: 128 DGGTRCASITGAWVALSLAL-------KKAKRSQALTAQVAAVSCGLTDAGAVLDLDYVE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS+ D NFV+T G I+E+QG+AE F + FF +L LAK A L + Q + Sbjct: 181 DSSAQADTNFVLTADGGIIEIQGTAEDKPFQESEFFELLRLAKLGTARLFEAQNKALET 239 >gi|332655285|ref|ZP_08421025.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16] gi|332515790|gb|EGJ45400.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16] Length = 237 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 102/238 (42%), Positives = 149/238 (62%), Gaps = 3/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R I + ++K+AEGSCL++ G+TH+L TA++E+K P + GW+TA Sbjct: 3 RIDGRKNDELRPIEIIPNINKFAEGSCLIRCGNTHVLCTASVEDKPPRHV-PEGEGWVTA 61 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R +R+ + GRS EIQR+IGR+LRSVVD LG I IDCDV+Q Sbjct: 62 EYSMLPRANRERSRRDISKLKLNGRSAEIQRLIGRSLRSVVDRKKLGPWNITIDCDVLQG 121 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITG +VA+ Q M + + G+VAA+S G++ P++DL Y E Sbjct: 122 DGGTRTASITGGFVAMMLAFQKMMEKGQL--SEYPISGYVAAVSAGVVNDVPMLDLCYEE 179 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS+ VD N VM D G ++E+QG+ E F+ + ++ L I +L QK + Sbjct: 180 DSSAMVDLNCVMDDQGRLIEIQGTGEGRPFTLEEQQKLVELCAKGIQELQAAQKKALG 237 >gi|254673252|emb|CBA08277.1| ribonuclease PH [Neisseria meningitidis alpha275] Length = 261 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 113/227 (49%), Positives = 160/227 (70%), Gaps = 2/227 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R+I +T + +GSCL++ G+T ++ TA+++E VP ++R GW+TAEYGM Sbjct: 9 RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTA+ITGA+VAL + + S+ ++ VAA+S G++ G P++DLDY EDS Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGC 186 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D D N VMT SG I+E+QG+AE A FS D ++ LA+ I +L Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELAA 233 >gi|313895897|ref|ZP_07829451.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975322|gb|EFR40783.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str. F0430] Length = 248 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 106/242 (43%), Positives = 154/242 (63%), Gaps = 5/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R+ +Q+R + + R +Y GS L++ G T ++ +A++EE+VP +++ + GW+TA Sbjct: 3 RRDLRRHDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSASVEERVPFFLKGSGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP + R REA+ GRQ GR+QEIQR+IGRALR+VVD ALG R I IDCDV+QA Sbjct: 63 EYAMLPGAGTERTAREAMRGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180 DGGTRTA+ITGA+VAL + F ++ + AA+S G+ P++D+ Y Sbjct: 123 DGGTRTASITGAFVALVEACATFYTKRGVF----PVRDYTAAVSVGIGAENTPLLDICYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED+ VD N VMT +G +EVQG+ E FS+ A+L+L + I +LI +QK + Sbjct: 179 EDAQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRALGE 238 Query: 241 EV 242 + Sbjct: 239 TL 240 >gi|281356100|ref|ZP_06242593.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548] gi|281317469|gb|EFB01490.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548] Length = 247 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 103/243 (42%), Positives = 150/243 (61%), Gaps = 4/243 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59 R+ GR +++R+I +T + S L++ G T ++ +++ KVP W++N K GWI Sbjct: 3 RIDGRAPDELRKIVITPDYLSHPLASVLIRNGGTRVVCAVSIDAKVPAWMKNRKVPGGWI 62 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T EYGMLP ST +R+KRE+ +G+QGGR+ EIQR+IGR+LR DL LG +DCDVI Sbjct: 63 TCEYGMLPASTHDRMKRESSAGKQGGRTVEIQRLIGRSLRMSADLLKLGENTAYLDCDVI 122 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTR A ITGA AL + + K VAAIS G++ G P++DL Y Sbjct: 123 DADGGTRCAGITGAATALAIACR--RGVAKGIFPENPFKESVAAISVGVIGGVPMLDLCY 180 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT+SG +VEVQG+AE FS+ +++LA+ + + +Q++ + Sbjct: 181 EEDSNAEVDMNVVMTESGKLVEVQGTAEGEPFSRARLNELIDLAEHGLKQVFAMQREAVE 240 Query: 240 NEV 242 + Sbjct: 241 TAL 243 >gi|118619118|ref|YP_907450.1| ribonuclease PH [Mycobacterium ulcerans Agy99] gi|166228296|sp|A0PUG0|RNPH_MYCUA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|118571228|gb|ABL05979.1| ribonuclease RphA [Mycobacterium ulcerans Agy99] Length = 259 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 107/238 (44%), Positives = 156/238 (65%), Gaps = 1/238 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+++++R + +TR ++ GS L++FG T ++ TA++ E V W + + GW+TA Sbjct: 4 REDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVSRWRKGSGLGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+QEI R++GR+LR+ +DL+ALG I +DCDV+QA Sbjct: 64 EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVNYL-AAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G +VEVQG+ E ATF + +L++A L Q D ++ Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQCDALA 240 >gi|197123834|ref|YP_002135785.1| ribonuclease PH [Anaeromyxobacter sp. K] gi|220918599|ref|YP_002493903.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1] gi|226736882|sp|B4UBI2|RNPH_ANASK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|254808575|sp|B8J5H5|RNPH_ANAD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|196173683|gb|ACG74656.1| ribonuclease PH [Anaeromyxobacter sp. K] gi|219956453|gb|ACL66837.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1] Length = 239 Score = 308 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 126/241 (52%), Positives = 166/241 (68%), Gaps = 2/241 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR E +R I L RVSK+AEGSCLV+FGDTH+L TA+++EKVP + T GW+T Sbjct: 1 MRKNGRGELDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R++REA G+Q GR+ EIQR++GRALR+ VDL A+G R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL ++ ++ Q +K VAA+S G++ G +DLDY Sbjct: 121 ADGGTRTAAITGAYVALVQAVRGIQKRRQLAQ--DPVKRSVAAVSVGIVAGQVHLDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST +VD N V T G +VEVQG+AE F + ML+ A ++ L +LQ+ + Sbjct: 179 EDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRAELDRMLDAALAGLSRLKELQEAALRT 238 Query: 241 E 241 Sbjct: 239 P 239 >gi|87308273|ref|ZP_01090414.1| ribonuclease PH [Blastopirellula marina DSM 3645] gi|87288830|gb|EAQ80723.1| ribonuclease PH [Blastopirellula marina DSM 3645] Length = 237 Score = 308 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 108/240 (45%), Positives = 148/240 (61%), Gaps = 8/240 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ NQ+RE+ + RR +K A GS L++ G T +L TA++E VP W++ + GWITA Sbjct: 3 RHDGRKANQLRELKIKRRFTKNAAGSVLIQTGATTVLCTASVESSVPPWLKGSGKGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R R + GR+ EIQR+IGR+LR+V DL ALG + I +DCDV+ A Sbjct: 63 EYNMLPGSTPTRKSR-----KVDGRTTEIQRLIGRSLRAVADLEALGEQMITVDCDVLDA 117 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA++AL D ++ L VAA+S G++ G +DLDY E Sbjct: 118 DGGTRTASITGAFIALVDA---LQTIVLPDPKKFPLVDSVAAVSVGLVNGAGALDLDYIE 174 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D VD N VMT SG VEVQG+ E ATF+++ ++ L K + L + Q + + Sbjct: 175 DVDAAVDMNVVMTGSGKFVEVQGAGEEATFTEEELMKLIQLGKHGVKVLTEAQAKALGKK 234 >gi|258651924|ref|YP_003201080.1| ribonuclease PH [Nakamurella multipartita DSM 44233] gi|258555149|gb|ACV78091.1| ribonuclease PH [Nakamurella multipartita DSM 44233] Length = 246 Score = 308 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 109/240 (45%), Positives = 156/240 (65%), Gaps = 1/240 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R ++ TR ++ GS LV+FG T +L A++ VP W + + GW+TA Sbjct: 3 RADGRADHELRPVTFTRGFQQHPAGSVLVEFGGTKVLCAASVTTGVPRWRKGSGLGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE+V GR GGR+ EI R+IGR+LR+ +DL +LG I +DCDV+QA Sbjct: 63 EYAMLPSATHERSDRESVKGRVGGRTHEISRLIGRSLRACLDLRSLGENTIAVDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + Q L +AA+S G++ G +DL Y E Sbjct: 123 DGGTRTAAITGAYVALADAVAYLRERGQLAD-PQPLSCQIAAVSVGVVGGRVRLDLPYEE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D+ +VD N V TD G +VEVQG+AE AT+S+ AML+ A IA L ++Q+ ++ Sbjct: 182 DARAEVDMNVVATDVGTLVEVQGTAEGATYSRSTLDAMLDSALAGIATLTEMQRAALAGP 241 >gi|254409968|ref|ZP_05023748.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420] gi|196183004|gb|EDX77988.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420] Length = 238 Score = 307 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R RQ NQ+R IS R +K+A S L K GDT +L T++ +P ++ T GW+TA Sbjct: 5 RPDHRQPNQLRPISFVRGFTKFAPASVLTKCGDTQVLCNVTIQPGIPRFLEGTGSGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+QEIQR+IGR+LR+ VDL+ALG R + +D DV+QA Sbjct: 65 EYRMLPGATPQRQTRELL--KLSGRTQEIQRLIGRSLRAAVDLTALGERTVFVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITG +VAL + L + ++ +AA+S G+L G P +DL Y E Sbjct: 123 DAGTRTASITGGYVALAEALDKLVQAGEL--ERSPIRHQIAAVSVGLLAGEPFLDLKYEE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N VM D +I+E+QG+AE +FS+ +++LA+ I +L+ Q+ +S Sbjct: 181 DVAAQTDFNIVMNDELNIIEIQGTAEAESFSRTQLNQLIDLAETGIQELLDAQRHALS 238 >gi|113475741|ref|YP_721802.1| ribonuclease PH [Trichodesmium erythraeum IMS101] gi|110166789|gb|ABG51329.1| RNAse PH [Trichodesmium erythraeum IMS101] Length = 238 Score = 307 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 102/238 (42%), Positives = 149/238 (62%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ NQ+R IS +K+A S L KFG+T +L T++ VP ++ +T GW+TA Sbjct: 5 RPDGRKSNQLRPISFELDYTKFATSSVLTKFGETKVLCNVTIQPGVPKFLADTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ +D++ LG R II+D DV+QA Sbjct: 65 EYRMLPAATSERQQREFM--KLSGRTQEIQRLIGRSLRAALDMNLLGERTIIVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG +VA+ + + + D + VAA+S G+L P +DL+Y E Sbjct: 123 DAGTRTVSITGGFVAVANAISKLIDQGKL--ERSPILHQVAAVSVGLLEKEPYLDLNYPE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D ++D N VM D ++EVQG+AE +FS+ +L+LA+ I L Q+ VIS Sbjct: 181 DVAAEIDFNVVMNDQPALIEVQGTAEIGSFSRTQLNQILDLAEAGIKKLFDAQRQVIS 238 >gi|269218709|ref|ZP_06162563.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211820|gb|EEZ78160.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str. F0332] Length = 245 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 109/231 (47%), Positives = 147/231 (63%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR +S++R EGS LV FG T +L A+ E VP W ++T GW+TAEY MLPR+T Sbjct: 1 MRPVSISRGWLDAGEGSVLVSFGKTTVLCVASFTEGVPRWRKDTGLGWVTAEYSMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R RE+V G+ GGR+ EI R+IGRALR+ VD+ ALG I +DCDV++ADGGTRTA+I Sbjct: 61 DERSARESVKGKIGGRTHEISRLIGRALRACVDMRALGENTIQLDCDVLRADGGTRTASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 TGA+ AL D + VL V+A+S G++ G P++DL Y EDS D D N Sbjct: 121 TGAFAALADAVDWAVGEGIVKPRRPVLSDTVSAVSVGVVDGRPVLDLPYEEDSRADTDMN 180 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 V T +G +E+QG+AERA FS+ +L+LA A L +QK+ ++ E Sbjct: 181 VVATGAGQFIEIQGTAERAPFSRGELGELLDLAAIGTAHLAAVQKEALTGE 231 >gi|324997302|ref|ZP_08118414.1| ribonuclease PH [Pseudonocardia sp. P1] Length = 245 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 107/225 (47%), Positives = 150/225 (66%), Gaps = 1/225 (0%) Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 +++TR K+ GS LV+FGDT +L A++ E VP W + + GW+TAEY MLP ST R Sbjct: 1 MTITRGFQKHPAGSVLVEFGDTKVLCAASVTEGVPRWRKGSGLGWVTAEYAMLPSSTDTR 60 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 RE+V G+ GGR+ EI R+IGR+LR+ +DL ALG I IDCDV+QADGGTRTAAITGA Sbjct: 61 SSRESVKGKIGGRTHEISRLIGRSLRACIDLRALGENTIAIDCDVLQADGGTRTAAITGA 120 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 +VAL D + + + K + + VAA+S G++ G +DL Y EDS +VD N V Sbjct: 121 YVALCDAVTWLGEHG-KLTDPKPISCQVAAVSVGVVDGRVRLDLPYEEDSRAEVDTNVVA 179 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T++G ++EVQG+ E ATF++ AML+ A IA + ++Q + + Sbjct: 180 TETGTLIEVQGTGEGATFARKTLDAMLDSALAGIAGIARMQIEAL 224 >gi|326387915|ref|ZP_08209521.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370] gi|326207961|gb|EGD58772.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370] Length = 238 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 119/237 (50%), Positives = 160/237 (67%), Gaps = 2/237 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR ++MR I++ +K+AEGS L+ FGDT ++ TA++EE+VP ++R GW+T Sbjct: 1 MRASGRAADEMRAITIETHFTKHAEGSVLIGFGDTKVIVTASVEERVPPFLRGKGEGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R REA G+Q GR+QEIQR+IGR+LR+V DL LG RQI +DCDVIQ Sbjct: 61 AEYSMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+GAW+AL + + L VAAISCG++ G P++DLDY Sbjct: 121 ADGGTRTASISGAWIALRLAVDKLMASGQI--KEDPLPRKVAAISCGIVDGTPVLDLDYT 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDST D DANFV+ + G I EVQ +AE AT+ ++ +L LA+ ++ Q Sbjct: 179 EDSTADADANFVLIEGGQIAEVQATAEGATYDEEALLRLLRLARIGCGEIFAAQDRA 235 >gi|332669877|ref|YP_004452885.1| ribonuclease PH [Cellulomonas fimi ATCC 484] gi|332338915|gb|AEE45498.1| ribonuclease PH [Cellulomonas fimi ATCC 484] Length = 262 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 119/235 (50%), Positives = 161/235 (68%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R ++LTRR EGS LV+FG T +L A+L E VP W + + GW+T Sbjct: 8 LRADGRRPDELRPVTLTRRFLDAGEGSVLVEFGGTKVLCVASLTEGVPRWRKGSGEGWVT 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+QEI R+IGR+LR+VVD+SALG I++DCDV+Q Sbjct: 68 AEYAMLPRATSTRSDRESVKGRVGGRTQEISRLIGRSLRAVVDVSALGENTIVLDCDVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + QVL+ VAA+S G++ G P++DL Y Sbjct: 128 ADGGTRTAAITGAYVALADAVAWAQQRRLVPAGRQVLRDSVAAVSVGIVDGVPVLDLPYV 187 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED + D N V+T SG VEVQG+AE A F + ++L+LA A+L +LQ+ Sbjct: 188 EDVRAETDMNVVVTGSGTFVEVQGTAEHAPFDRRELDSLLDLALAGTAELTRLQR 242 >gi|325110867|ref|YP_004271935.1| RNAse PH [Planctomyces brasiliensis DSM 5305] gi|324971135|gb|ADY61913.1| RNAse PH [Planctomyces brasiliensis DSM 5305] Length = 245 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 114/243 (46%), Positives = 156/243 (64%), Gaps = 4/243 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGW 58 MR GRQ Q+R I + R + A GS +K G T LL TA+++ VP W ++ + GW Sbjct: 1 MRNDGRQAEQLRPIRVQRHFTGSAPGSVYIKAGRTTLLCTASVDLDVPPWKKHEENPSGW 60 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +TAEY MLP ST R +RE + GRS EIQR+IGR+LR+VVD +ALG R I IDCDV Sbjct: 61 VTAEYNMLPGSTSPRKRRE--RTKVDGRSSEIQRLIGRSLRAVVDFAALGPRTITIDCDV 118 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ++ADGGTRT ITG ++AL D L ++ ++L VAAIS G++ P++DLD Sbjct: 119 LEADGGTRTLGITGGFIALVDALIWLQKQEPTCDPKKILTDTVAAISVGIVRQTPMLDLD 178 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 Y EDST +VD N VMT SG VE+QG+AE+ +FS+ L LA+ I +L ++Q+D Sbjct: 179 YSEDSTAEVDLNVVMTGSGEFVEIQGTAEQKSFSRTQLDQQLGLAEKAIVELTRIQRDAF 238 Query: 239 SNE 241 ++ Sbjct: 239 GDQ 241 >gi|294787659|ref|ZP_06752903.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453] gi|294483952|gb|EFG31635.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453] Length = 245 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 114/235 (48%), Positives = 160/235 (68%), Gaps = 2/235 (0%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R N++REI++ +A+GS L+ G+T ++ TAT+++ VP ++R GW+TAEYGM Sbjct: 12 RAANELREITIQPNFLPHADGSVLISCGNTKVICTATIDQNVPSFLRGKGEGWVTAEYGM 71 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST +R+KREA SG+Q GR+QEIQR+IGR+LR+ VD+ LG RQI+IDCDVIQADGGT Sbjct: 72 LPASTQSRMKREAASGKQSGRTQEIQRLIGRSLRACVDMKKLGERQILIDCDVIQADGGT 131 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RT +ITGA+VAL +Q M ++ L G VAA+S G++ G P++DLDY EDS Sbjct: 132 RTTSITGAFVALKMAIQKM--LNDGRLPETPLIGSVAAVSVGVVGGVPLLDLDYPEDSNC 189 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D N VM ++ I+E+QG+AE A FS ++ L + I L +LQ+ + Sbjct: 190 DSDVNLVMLNADKIIEIQGTAEGAAFSLAELQTLIALGQKGITQLAQLQQKALRT 244 >gi|186682825|ref|YP_001866021.1| ribonuclease PH [Nostoc punctiforme PCC 73102] gi|226736921|sp|B2J9Q1|RNPH_NOSP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|186465277|gb|ACC81078.1| ribonuclease PH [Nostoc punctiforme PCC 73102] Length = 247 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 100/239 (41%), Positives = 146/239 (61%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++R IS +++A GS L + GDT +L T ++ + VP ++ T GW+TA Sbjct: 5 RPDGRLPYELRPISFYPSFTRFAPGSVLARCGDTQVLCTVSVNKGVPKFLEGTGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ VD ALG R + +D DV+QA Sbjct: 65 EYRMLPSATQKRQERELL--KLSGRTQEIQRLIGRSLRAAVDFEALGERTLTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT AITG++VAL + + L G VAA+S G+L P +DL+Y E Sbjct: 123 DAGTRTTAITGSFVALAHAISKL--LQEGVLERSPLCGQVAAVSVGLLEAEPFLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D VD N VM I+EVQG+AE +FS+ +L++A+ I +L+ Q++ I++ Sbjct: 181 DVAATVDFNVVMDQHLGIIEVQGTAEEGSFSRTQLDQLLDVAQKGIQELLIAQREAIAD 239 >gi|153006268|ref|YP_001380593.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5] gi|166228263|sp|A7HFW3|RNPH_ANADF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|152029841|gb|ABS27609.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5] Length = 238 Score = 305 bits (783), Expect = 3e-81, Method: Composition-based stats. Identities = 126/240 (52%), Positives = 162/240 (67%), Gaps = 2/240 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR +GR +R + L VSK+AEGSCL +FGDTH+L TA+++EKVP + T GW+T Sbjct: 1 MRTNGRGPRDLRNVVLEPGVSKHAEGSCLARFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R+ REA G+QGGR+ EIQR+IGRALR+ VDL ALG+R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHERMAREAARGKQGGRTLEIQRLIGRALRAAVDLRALGTRTVTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG +VAL L+ ++ K L VAA+S G++ G VDLDYG Sbjct: 121 ADGGTRTAAITGGYVALALALRGLQQ--RKTLSRNPLARSVAAVSVGLVEGEVCVDLDYG 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST +VD N V T G +VEVQG+AE F + M++ A + I L + Q+ + Sbjct: 179 EDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRSDLDRMVDAALEAIGRLKERQEQALRG 238 >gi|299139261|ref|ZP_07032437.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8] gi|298598941|gb|EFI55103.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8] Length = 248 Score = 305 bits (782), Expect = 4e-81, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 154/239 (64%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R GR +Q R + LT AEGS L++ G T +L AT+E VP W+RN+ GW+T Sbjct: 10 FRSGGRAASQARALRLTPGFVATAEGSVLIEVGHTRVLCNATVENGVPGWMRNSGRGWVT 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R RE+ G+ GGR+ EIQR+IGR+LRSVVD+ LG R II+DCDV+Q Sbjct: 70 AEYGMLPRATLTRTARESERGKIGGRTHEIQRLIGRSLRSVVDMRLLGERTIILDCDVLQ 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA AL L + + LK VAA S G++ G ++DL Y Sbjct: 130 ADGGTRTAAITGACTALALALGKLVQAGSL--KESPLKQMVAATSVGIVDGRVLLDLAYE 187 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VD N VMT G +VE Q +AER T+++ ML++A I +L+K Q++ ++ Sbjct: 188 EDSRAEVDMNVVMTADGGLVETQATAERGTYTRAQLNEMLDVAAVGIEELLKAQRECLA 246 >gi|209523065|ref|ZP_03271622.1| ribonuclease PH [Arthrospira maxima CS-328] gi|209496652|gb|EDZ96950.1| ribonuclease PH [Arthrospira maxima CS-328] Length = 242 Score = 305 bits (782), Expect = 4e-81, Method: Composition-based stats. Identities = 97/238 (40%), Positives = 146/238 (61%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R + +++A S L K G+T +L T T++ VP ++++T GW+TA Sbjct: 6 RPDGRQPHQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+QEIQR+IGR+LR+ VDL A+G + +D DV+QA Sbjct: 66 EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG +VAL M + +AAIS GM+ G P++DL+Y E Sbjct: 124 DAGTRTTSITGGFVALAHAFNKMVKQGQL--KRSPIIHQIAAISVGMMHGEPLLDLNYQE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D+D N VM D I+E+QG+AE + +++ +L+ A+ I +L +LQ+ V+ Sbjct: 182 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVLG 239 >gi|229821215|ref|YP_002882741.1| ribonuclease PH [Beutenbergia cavernae DSM 12333] gi|229567128|gb|ACQ80979.1| ribonuclease PH [Beutenbergia cavernae DSM 12333] Length = 279 Score = 305 bits (781), Expect = 5e-81, Method: Composition-based stats. Identities = 105/215 (48%), Positives = 144/215 (66%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + +R I +TR AEGS LV+FG+T +L A+ VP W + + GW+T Sbjct: 14 VRADGRAPDDLRPIRITRGWLDAAEGSVLVEFGNTRVLCAASFTAGVPRWRKGSGEGWVT 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+V+D++ALG I++DCDV+Q Sbjct: 74 AEYAMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRAVIDVAALGENTIVVDCDVLQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + + VL+ V+A+S G++ G P++DL Y Sbjct: 134 ADGGTRTAAITGAYVALADAVAWGLEHGEVRRGAHVLRDSVSAVSVGIVDGAPLLDLPYA 193 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215 ED + D N V+T SG VEVQG+AE A F + Sbjct: 194 EDVRAETDMNVVVTGSGSFVEVQGTAEGAPFDRAE 228 >gi|75908883|ref|YP_323179.1| ribonuclease PH [Anabaena variabilis ATCC 29413] gi|123609297|sp|Q3M9Q2|RNPH_ANAVT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|75702608|gb|ABA22284.1| RNAse PH [Anabaena variabilis ATCC 29413] Length = 247 Score = 304 bits (780), Expect = 6e-81, Method: Composition-based stats. Identities = 97/239 (40%), Positives = 145/239 (60%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++R I+ + +++A GS L G+T +L T ++ E VP ++ + GW+TA Sbjct: 5 RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVAESVPKFLAGSGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ +D ALG R + +D DV+QA Sbjct: 65 EYRMLPSATQQRHERELL--KLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITG +VAL + + + L G VAA+S G+L +DL+Y E Sbjct: 123 DAGTRTAAITGGFVALAEAISQL--LQRGVLERSPLCGQVAAVSVGLLEQEAYLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D VD N VM + I+EVQG+AE +FS+ +L+ A+ I L+ Q+ I++ Sbjct: 181 DVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETGIQQLLIAQQKAITD 239 >gi|260886704|ref|ZP_05897967.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185] gi|330839468|ref|YP_004414048.1| ribonuclease PH [Selenomonas sputigena ATCC 35185] gi|260863556|gb|EEX78056.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185] gi|329747232|gb|AEC00589.1| ribonuclease PH [Selenomonas sputigena ATCC 35185] Length = 248 Score = 304 bits (780), Expect = 6e-81, Method: Composition-based stats. Identities = 115/242 (47%), Positives = 155/242 (64%), Gaps = 5/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + +R + + R K GS L++ G T ++ A++E++VP ++R T GWI A Sbjct: 3 RIRGRAADALRPLKMMRGFQKGPAGSVLIEMGRTRVICAASVEDRVPYFLRGTGTGWIKA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP +T R REA GRQ GR+QEIQR+IGR+LRSVVDL+ALG R I +DCDVI+A Sbjct: 63 EYALLPSATSTRTPREACQGRQSGRTQEIQRLIGRSLRSVVDLAALGERTIALDCDVIEA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180 DGGTRTAAITGA+VAL + + F +K +AA+S G+ G PI+DL Y Sbjct: 123 DGGTRTAAITGAFVALVEACASFYEKGKTF----PVKDFLAAVSVGLAQDGEPILDLCYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST VD N VMT + VEVQG+ E FS+ +L LA+ + +LI QKD + Sbjct: 179 EDSTALVDMNVVMTGAYDFVEVQGTGEGRPFSRREMADLLALAEKGVDELIARQKDALGG 238 Query: 241 EV 242 E+ Sbjct: 239 EL 240 >gi|148260661|ref|YP_001234788.1| ribonuclease PH [Acidiphilium cryptum JF-5] gi|146402342|gb|ABQ30869.1| RNAse PH [Acidiphilium cryptum JF-5] Length = 243 Score = 304 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 116/230 (50%), Positives = 159/230 (69%), Gaps = 2/230 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R++ + S++AEGS L++ G T +L A++E +VP ++R GW+TA Sbjct: 6 RPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVD +ALG I +DCDV+ A Sbjct: 66 EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR AAITGAWVAL ++ + + + L G VAA+SCG+ G P++DLDY E Sbjct: 126 DGGTRCAAITGAWVALALAIRTLRKAN--VIATDPLIGQVAAVSCGVFGGVPVLDLDYAE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 DS + DANFV+T +G IVE+Q +AERATF + F +L LA+ A+L Sbjct: 184 DSNAEADANFVLTGTGGIVEIQATAERATFEEATFGTLLGLARKGTAELF 233 >gi|218439976|ref|YP_002378305.1| ribonuclease PH [Cyanothece sp. PCC 7424] gi|226736901|sp|B7KB81|RNPH_CYAP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|218172704|gb|ACK71437.1| ribonuclease PH [Cyanothece sp. PCC 7424] Length = 242 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 102/239 (42%), Positives = 150/239 (62%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R RQ +Q+R I S++ GS L G+T +L TAT++ VP ++ N+ GW+TA Sbjct: 5 RPDSRQPDQLRPILFETNYSRFRVGSVLAHCGETRVLCTATIQPNVPKFLLNSGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + GR+QEIQR+IGR+LR+ +D LG R IIID DV+QA Sbjct: 65 EYRMLPGATPERQSRELMQ--LSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT AITG ++AL ++ + + LK VAA+S G++ G P +DL+Y E Sbjct: 123 DAGTRTTAITGGYIALGLAIKKLLEVGEL--QESPLKLPVAAVSVGLIEGEPFLDLNYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+ +VD N VMT + ++EVQG+AE +FS+ +L+LA+ I +L+ Q++ I++ Sbjct: 181 DTAAEVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQTGIQELLVAQQNAINS 239 >gi|168702929|ref|ZP_02735206.1| RNase PH [Gemmata obscuriglobus UQM 2246] Length = 243 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 152/239 (63%), Gaps = 2/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R + R +RE+S TR ++ A GS LVK G T +L T +E KVP ++ GW+TA Sbjct: 3 RPNDRSPTALRELSFTRGYTRPAPGSVLVKMGRTTVLCTCCVEPKVPDFLVGKGKGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLP ST R R+ G+ GRS EIQR+IGR+LR+VV+L LG R + IDCDV++A Sbjct: 63 EYGMLPGSTHTRKPRDKA-GKVDGRSVEIQRLIGRSLRAVVNLDKLGERTLWIDCDVLEA 121 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA+VA D + ++ +++VL VAA+S G++ G +DL+Y E Sbjct: 122 DGGTRTASITGAFVAAVDAINSIKSLLT-VPVTEVLTDSVAAVSVGLIEGEERLDLEYVE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D DVD N VMT SG I+EVQGS E ATF++ +++L + I + QK + + Sbjct: 181 DRDADVDMNLVMTGSGKIIEVQGSGEEATFTRKQLDRLVDLGEAGIQAITLAQKAALGS 239 >gi|210632429|ref|ZP_03297357.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279] gi|210159524|gb|EEA90495.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279] Length = 244 Score = 304 bits (779), Expect = 8e-81, Method: Composition-based stats. Identities = 119/238 (50%), Positives = 160/238 (67%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R + MR ++LTR V K A GSCLV+FGDT +L AT+EE VP W + ++ GW+TA Sbjct: 8 RSFDRAADAMRPVNLTRDVMKNALGSCLVEFGDTKVLCAATIEEGVPGWRKASRQGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R +RE + + GRS EI+R+IGR+LR+VV++ ALG + +DCDVIQA Sbjct: 68 EYAMLPASTNRRTRRETSNRK--GRSMEIERLIGRSLRTVVNMKALGEHTVTVDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVALHD L + +L L G VAA+S G++ G ++DLDY E Sbjct: 126 DGGTRTASITGAWVALHDALMAWVEAGKISRL--PLTGQVAAVSMGLVDGCELLDLDYAE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V TD+G I+E+QG+ E+ F + +L+L + I LI LQ +V + Sbjct: 184 DSHAEVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEVTA 241 >gi|163845843|ref|YP_001633887.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl] gi|222523554|ref|YP_002568024.1| ribonuclease PH [Chloroflexus sp. Y-400-fl] gi|163667132|gb|ABY33498.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl] gi|222447433|gb|ACM51699.1| ribonuclease PH [Chloroflexus sp. Y-400-fl] Length = 250 Score = 304 bits (779), Expect = 9e-81, Method: Composition-based stats. Identities = 110/230 (47%), Positives = 152/230 (66%), Gaps = 4/230 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR +Q+R IS+ + YAEGS L+ +G T +L TAT+E+ VP W+R + GW+T Sbjct: 2 MRIDGRSPDQLRPISIEIGAAPYAEGSALIAYGKTRVLCTATVEDGVPAWMRGQQSGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE GR+QEIQR+IGR+LR+ +DL+ALG R I IDCDV+Q Sbjct: 62 AEYAMLPRATLQRTRRE--RNGPSGRTQEIQRLIGRSLRAAIDLNALGERTITIDCDVLQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAI+G +VAL + ++ ++ VAA+S GML G ++DL Y Sbjct: 120 ADGGTRTAAISGGYVALALAVDYLVRSG--VLETRPTLTPVAAVSVGMLQGVLLLDLCYE 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 EDS D+D N VM +G +EVQ +AER+ ++D A+L+LA I + Sbjct: 178 EDSQADLDCNVVMNSAGGYIEVQATAERSAVTRDQLNALLDLAGRGIQQI 227 >gi|262193889|ref|YP_003265098.1| ribonuclease PH [Haliangium ochraceum DSM 14365] gi|262077236|gb|ACY13205.1| ribonuclease PH [Haliangium ochraceum DSM 14365] Length = 250 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 110/229 (48%), Positives = 153/229 (66%), Gaps = 5/229 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ NQ+R + +T +YAEGS L+K G+T +L A++EE+VP ++ GW+TA Sbjct: 3 RPDGREANQLRPVEITTGFQQYAEGSALIKSGNTWVLCAASIEERVPPFLAGRGTGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPRST R R + GGR +EIQR+IGR+LR+ V++ ALG R I IDCDV+QA Sbjct: 63 EYAMLPRSTHTRSGRHS-----GGRGKEIQRLIGRSLRAAVNMEALGERAITIDCDVLQA 117 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITG +VAL + + + VL+ +AAIS G++ G +DL Y E Sbjct: 118 DGGTRVASITGGYVALALAVDGLVRAGLVASVESVLREPIAAISVGIIDGEARLDLPYAE 177 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 DST +VD N VMT+SGH+VEVQG+ E+ TFS+ ++L+LA + + L Sbjct: 178 DSTAEVDMNVVMTESGHLVEVQGTGEQGTFSRAQLDSLLDLATEGVKRL 226 >gi|269925889|ref|YP_003322512.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798] gi|269789549|gb|ACZ41690.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798] Length = 245 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 5/240 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+ N++R S+ + GS +++ G T +L A+++E VP ++ T GW+T Sbjct: 6 IRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAASIQEGVPKFLEGTGQGWLT 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST R RE+ +GR GR+QEIQR+IGR+LR+ V L +G II+DCDV+Q Sbjct: 66 AEYSMLPASTQTRTPRESHTGRLQGRTQEIQRLIGRSLRAAVKLDQIGEITIIVDCDVLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VA L+ + + + +S VAA+S G++ G P++DL+Y Sbjct: 126 ADGGTRTASITGGYVATVLALRKIFPDTYRDLVS-----PVAAVSVGIVNGTPMLDLNYA 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST D D N V G +E+Q +AER +FS++ AML+LA IA+L++ Q V+S+ Sbjct: 181 EDSTADTDLNVVKNHLGDYIEIQATAERVSFSREELDAMLSLADKGIAELMESQSKVLSS 240 >gi|209966225|ref|YP_002299140.1| ribonuclease PH [Rhodospirillum centenum SW] gi|209959691|gb|ACJ00328.1| ribonuclease PH [Rhodospirillum centenum SW] Length = 239 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 127/228 (55%), Positives = 166/228 (72%), Gaps = 2/228 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +QMR +SL VSK+AEGSCLV+FGDTH+L TA++E++VP ++R GW+TA Sbjct: 3 RPSGRSLDQMRPVSLETNVSKHAEGSCLVRFGDTHVLCTASVEDRVPPFLRGQGQGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA GRQ GR+QEIQR+IGR+LR+V D+ A+G + IDCDV+QA Sbjct: 63 EYGMLPRATAERTDREAAKGRQTGRTQEIQRLIGRSLRAVTDVKAMGEITVKIDCDVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG++VAL +H+ F +Q L VAA+SCG+ G P++DLDY E Sbjct: 123 DGGTRTAAITGSYVALALAFRHLTSIG--FLKAQPLTDSVAAVSCGLYQGAPVLDLDYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 DS+ DANFV+T G IVE+QG+AE+ F + F A+L LA+ I + Sbjct: 181 DSSAQADANFVLTGKGGIVEIQGTAEKTPFQEAEFLALLALARKGIGE 228 >gi|220910436|ref|YP_002485747.1| ribonuclease PH [Cyanothece sp. PCC 7425] gi|254808586|sp|B8HPC6|RNPH_CYAP4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|219867047|gb|ACL47386.1| ribonuclease PH [Cyanothece sp. PCC 7425] Length = 239 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 102/239 (42%), Positives = 148/239 (61%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +Q+R IS R +++A GS L + G T +L T+ VP ++ GW+TA Sbjct: 5 RPDGRQSHQLRPISFERGFTRFAAGSVLTRCGQTQVLCNVTVRPGVPKFLEGRGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ +D LG R +++D DV+QA Sbjct: 65 EYRMLPAATPQRQEREML--KLSGRTQEIQRLIGRSLRAALDFDLLGERTLVVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT AITG++VAL D + + ++ +VAA+S G+L G P +DL Y E Sbjct: 123 DAGTRTTAITGSFVALADAIDQLLQAGEL--QRSPIRNYVAAVSVGLLEGEPFLDLSYQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D VD N VMT+S I+E+QG+AE +FS+ +L++A+ I +LI QK V+ Sbjct: 181 DVAASVDFNVVMTESLQILELQGTAEGESFSRTQLNQILDVAEVGIRELIAAQKSVLGQ 239 >gi|309792378|ref|ZP_07686846.1| ribonuclease PH [Oscillochloris trichoides DG6] gi|308225599|gb|EFO79359.1| ribonuclease PH [Oscillochloris trichoides DG6] Length = 240 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 114/238 (47%), Positives = 154/238 (64%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR ++R I + + YAEGS L+ G+T +L A+LE +VP W+R + GW+TA Sbjct: 7 RQSGRLPTELRSIEILVNAAPYAEGSALISCGNTRVLCAASLEPQVPGWLRGQQRGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LPRST R +RE GR+QEIQR+IGR+LR+ VDL ALG I +DCDV+QA Sbjct: 67 EYSLLPRSTHTRTRRE--RSGPSGRTQEIQRLIGRSLRAAVDLEALGECMITVDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG +VAL L+ + + + ++ VAAIS G++ G ++DLDY E Sbjct: 125 DGGTRTAAITGGYVALALALRKLH--AEGLIATNPIRYAVAAISVGVVEGQMLLDLDYAE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS+ D+D N V T SG VEVQG+AE + A+L+LA IA LI +Q+ V+ Sbjct: 183 DSSADLDCNIVQTASGAFVEVQGTAEGMPIDRAQLDALLDLASQGIARLITIQQAVLG 240 >gi|154507583|ref|ZP_02043225.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC 17982] gi|153797217|gb|EDN79637.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC 17982] Length = 235 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 107/227 (47%), Positives = 150/227 (66%) Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +TR S EGS L++FG+T +L A+ E VP W R++ GW+T EY MLPR+T R Sbjct: 1 MTRGWSGTGEGSVLIEFGNTRVLCVASFTEGVPRWKRDSGEGWVTGEYSMLPRATEQRSS 60 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE+V G+ GGR+QEI R+IGR+LR +VD+SALG I++DCDV++ADGGTRTAAITGA+V Sbjct: 61 RESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLRADGGTRTAAITGAYV 120 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL D + ++ ++VL ++AIS G++ G P++DL Y ED + D N V T Sbjct: 121 ALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYVEDVRAETDMNVVQTG 180 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 SG +EVQG+AE A F++D +L+LA A L + QK + + Sbjct: 181 SGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQKLALEAPL 227 >gi|254166930|ref|ZP_04873784.1| ribonuclease PH [Aciduliprofundum boonei T469] gi|254168500|ref|ZP_04875344.1| ribonuclease PH [Aciduliprofundum boonei T469] gi|289596090|ref|YP_003482786.1| ribonuclease PH [Aciduliprofundum boonei T469] gi|197622555|gb|EDY35126.1| ribonuclease PH [Aciduliprofundum boonei T469] gi|197624540|gb|EDY37101.1| ribonuclease PH [Aciduliprofundum boonei T469] gi|289533877|gb|ADD08224.1| ribonuclease PH [Aciduliprofundum boonei T469] Length = 234 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 102/239 (42%), Positives = 150/239 (62%), Gaps = 6/239 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R+ +++R + + K GS L+K GDT +L +A + E VP W++ GW+T Sbjct: 1 MR--NRKPDEIRNVEIIPNYQKKPYGSALIKQGDTVVLCSAQVIENVPDWLKEQNSGWLT 58 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP S+ R+ R+ G GRS+EI+R+IGR LR+ VDL LG R I IDCDVIQ Sbjct: 59 AEYSMLPGSSETRIFRD--RGHVNGRSKEIERIIGRCLRAAVDLKKLGPRTIWIDCDVIQ 116 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+IT +VAL ++ + + +K VAAIS G++ G P++DL Y Sbjct: 117 ADGGTRTASITAGFVALSLAIRRLMKEGKLGE--NPIKYKVAAISAGIVNGEPLLDLAYE 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N M + G +E+QG++E+ S+++ +L+LA+ I +L K Q++ ++ Sbjct: 175 EDSQADVDINIAMNEEGKYIEIQGTSEKEPLSRENLNILLDLAEKGIKELFKKQEEALN 233 >gi|302336447|ref|YP_003801654.1| RNAse PH [Olsenella uli DSM 7084] gi|301320287|gb|ADK68774.1| RNAse PH [Olsenella uli DSM 7084] Length = 267 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 126/236 (53%), Positives = 158/236 (66%), Gaps = 4/236 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +QMR LTR + K A+GSCL +FGDT ++ TAT+EE VP W + ++ GW++A Sbjct: 31 RSYGRAADQMRPAKLTRDIMKNADGSCLAEFGDTRVICTATVEEGVPAWRKGSRAGWVSA 90 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R +RE + GRS EI+R+IGR+LR+VVDL LG +I DCDVIQA Sbjct: 91 EYAMLPASTSTRSRREYKGRK--GRSMEIERLIGRSLRAVVDLHRLGELTVICDCDVIQA 148 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVALHD L D +L L G VAAIS GM+ G ++DLDY E Sbjct: 149 DGGTRTASITGAWVALHDALMASVDAGRLARL--PLTGQVAAISMGMVDGSLLLDLDYPE 206 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DS VD N V TD+G IVEVQG+ ER+T + A+L+L + I L+ LQ V Sbjct: 207 DSHAQVDMNLVGTDAGGIVEVQGTGERSTIDRAQLNALLDLGQVGIGRLVALQNQV 262 >gi|86739583|ref|YP_479983.1| ribonuclease PH [Frankia sp. CcI3] gi|123765222|sp|Q2JEN8|RNPH_FRASC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|86566445|gb|ABD10254.1| RNAse PH [Frankia sp. CcI3] Length = 247 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 104/242 (42%), Positives = 149/242 (61%), Gaps = 7/242 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R++++ R ++AEGS L+ G T +L A++ VP W + + GW+T Sbjct: 2 IRADGRRPDELRQVTILRGWQEHAEGSALISAGRTRVLCAASVTTGVPRWRKGSGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GR+ EI R+IGR+LR+ +DL ALG I IDCDV+ Sbjct: 62 AEYSMLPRATDTRNDRESVRGRISGRTHEISRLIGRSLRACIDLKALGENTIAIDCDVLL 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + V+A+S G++ G ++DL Y Sbjct: 122 ADGGTRTAAITGAYVALVDAARWLGR-------PDAIITSVSAVSVGVVKGEAMLDLAYS 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDST D D N V T + VEVQG+AE F + ++L+LA A L +Q + + Sbjct: 175 EDSTADTDMNVVCTGADGFVEVQGTAEGTPFDRTMLDSLLDLAVRGCAQLTAIQTEALRG 234 Query: 241 EV 242 V Sbjct: 235 PV 236 >gi|56750485|ref|YP_171186.1| ribonuclease PH [Synechococcus elongatus PCC 6301] gi|81299882|ref|YP_400090.1| ribonuclease PH [Synechococcus elongatus PCC 7942] gi|61215786|sp|Q5N4V3|RNPH_SYNP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|123557014|sp|Q31PB6|RNPH_SYNE7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|56685444|dbj|BAD78666.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168763|gb|ABB57103.1| RNAse PH [Synechococcus elongatus PCC 7942] Length = 238 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 99/239 (41%), Positives = 147/239 (61%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +Q+R I+ RR +++ GS L +FG T +L T T++ VP W+ GW+T Sbjct: 4 IRPDGRRPDQLRAIAFQRRFTQFPAGSVLAQFGQTQVLCTVTIQAGVPRWLTGQGQGWLT 63 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T +R RE + + GR+QEIQR+IGR+LR+ +DL LG R ++ID DV+Q Sbjct: 64 AEYRMLPGATPDRQSREWL--KLSGRTQEIQRLIGRSLRAAIDLKKLGERTLLIDADVLQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTRT AI G+WVAL D + + + ++ +AA+S ++ G +D DY Sbjct: 122 ADAGTRTTAINGSWVALQDAIAQL--IAQGELTESPIQRSIAAVSVALIGGEAFLDPDYP 179 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED DVD N VM D G ++E+QG+AE FS+ +L+LA+ IA + Q + + Sbjct: 180 EDVQADVDCNVVMGDRGELIEIQGTAEANPFSRTQLNHILDLAEQGIAQIQAAQLEALR 238 >gi|238897732|ref|YP_002923411.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259494122|sp|C4K3X0|RNPH_HAMD5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|229465489|gb|ACQ67263.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 241 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 126/243 (51%), Positives = 161/243 (66%), Gaps = 5/243 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR Q+R ++ TR +KYAEG+ LV+FG+T +L TAT+EE VP +++ GWIT Sbjct: 1 MRPSGRTAQQLRPLTFTRHYTKYAEGAVLVEFGETRVLCTATVEEGVPRFLKGQNKGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPRST R RE+V G+QGGR+ EIQR+I RALR+ VDL+ LG I +DCDV+Q Sbjct: 61 AEYSMLPRSTHQRHARESVKGKQGGRTLEIQRLIARALRAAVDLTKLGEFTIKLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA VAL D LQ M S +KG VAA+S G++ G I DL+Y Sbjct: 121 ADGGTRTAAITGACVALQDALQKMRVEGKL--KSNPMKGLVAAVSVGVVGGESICDLEYI 178 Query: 181 EDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED+ + D N VM + G I+E+QG+AE A FS +L LA D I + + QK V Sbjct: 179 EDAIAETDMNVVMIEEGAGRKIIEIQGTAEGAPFSHQQLLELLALADDGIKTIFQAQKKV 238 Query: 238 ISN 240 + Sbjct: 239 LEK 241 >gi|296137098|ref|YP_003644340.1| ribonuclease PH [Thiomonas intermedia K12] gi|294341380|emb|CAZ89797.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Thiomonas sp. 3As] gi|295797220|gb|ADG32010.1| ribonuclease PH [Thiomonas intermedia K12] Length = 243 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 119/235 (50%), Positives = 159/235 (67%), Gaps = 2/235 (0%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR + +R I++ R +++AEGS LV FG T +L TA++EE+VP R + GW+TAEYG Sbjct: 10 GRGLSALRAIAIERHFTRHAEGSVLVAFGHTRVLCTASVEERVPPHKRGSGQGWVTAEYG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T R +REA G+Q GR++EIQR+IGR+LR+V D SALG RQI +DCDV+QADGG Sbjct: 70 MLPRATHTRGEREAKRGKQQGRTEEIQRLIGRSLRAVFDFSALGERQITLDCDVLQADGG 129 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTAAITGA VA D Q + Q ++ VAA+S G+L +DLDY EDS Sbjct: 130 TRTAAITGAAVAAWDACQWLMAQGRIPQ--NPMRQLVAAVSVGLLGDDYRLDLDYAEDSQ 187 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D N V T G ++EVQG+AE A FS+ M++LA+ IA+L+ LQ+ + Sbjct: 188 CDTDMNVVGTADGALIEVQGTAEGAPFSRQQLDGMIDLAQRGIAELVALQRQALE 242 >gi|158317399|ref|YP_001509907.1| ribonuclease PH [Frankia sp. EAN1pec] gi|226736910|sp|A8L766|RNPH_FRASN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|158112804|gb|ABW15001.1| ribonuclease PH [Frankia sp. EAN1pec] Length = 260 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 107/234 (45%), Positives = 148/234 (63%), Gaps = 7/234 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +Q+R++++ R ++AEGS L+ G T +L A++ E VP W + + GW+T Sbjct: 2 IRVDGRTTDQLRDVTIERGWQEHAEGSALISAGRTRVLCAASVTEGVPRWRKGSGLGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG I IDCDV+ Sbjct: 62 AEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLL 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL D + + + V A+S G++ G P++DL Y Sbjct: 122 ADGGTRTAAITGAYVALADACRWLGRPAAIV-------TSVCAVSVGVVGGVPMLDLAYT 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 EDST D D N V T +G VEVQG+AE F + +L+LA L ++Q Sbjct: 175 EDSTADTDMNVVRTGAGGFVEVQGTAEGTPFERSTLDELLDLAVAGCTRLTEIQ 228 >gi|254479649|ref|ZP_05092951.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653] gi|214034420|gb|EEB75192.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653] Length = 229 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 107/209 (51%), Positives = 147/209 (70%), Gaps = 2/209 (0%) Query: 32 FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91 G+T ++ TA++E+KVP + + T GWIT+EYGMLPR+T R RE GR GR+ EIQ Sbjct: 1 MGETKVICTASIEDKVPPFQKGTGKGWITSEYGMLPRATEVRNPREVTKGRPSGRTMEIQ 60 Query: 92 RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151 R+IGR+LR+VVDL ALG R I IDCDVIQADGGTRTA+ITG+++AL D L + + Sbjct: 61 RLIGRSLRAVVDLEALGERTIWIDCDVIQADGGTRTASITGSFIALADALNKLVEKGELQ 120 Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211 ++ LK VAA+S G++ G ++DL + ED+ VD N VMTD G IVE+QG+ E F Sbjct: 121 KI--PLKSFVAAVSVGIVEGNKLLDLSFQEDANALVDMNVVMTDKGEIVEIQGTGEGGPF 178 Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVISN 240 S+ +F +L+LA I +IK+QK+V+S+ Sbjct: 179 SRQNFEELLDLAAHGIEQIIKIQKEVLSD 207 >gi|298490673|ref|YP_003720850.1| ribonuclease PH ['Nostoc azollae' 0708] gi|298232591|gb|ADI63727.1| ribonuclease PH ['Nostoc azollae' 0708] Length = 246 Score = 301 bits (772), Expect = 5e-80, Method: Composition-based stats. Identities = 101/239 (42%), Positives = 146/239 (61%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++R +S +++A GS L K GDT +L T ++ + VP ++ T GW+TA Sbjct: 5 RPDGRNSYELRPLSFYSNFTRFASGSVLAKCGDTQVLCTVSVSDSVPKFLNGTGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ +D LG R +IID DV+QA Sbjct: 65 EYRMLPSATQKRQERELL--KLSGRTQEIQRLIGRSLRAALDFEVLGERTLIIDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT AITG++VAL + M L VAA+S G+L G +DL+Y E Sbjct: 123 DAGTRTTAITGSFVALAHAISQM--LQQGVLERSPLCRQVAAVSVGLLAGEAFLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D VD N VM + I+EVQG+AE +F++ +L++A+ I +L+ Q+D I+N Sbjct: 181 DVAATVDFNVVMNQNLEIIEVQGTAEEGSFNRQQLNKLLDVAEKGIQELLIAQRDAITN 239 >gi|328466632|gb|EGF37767.1| ribonuclease PH [Listeria monocytogenes 1816] Length = 228 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 106/226 (46%), Positives = 149/226 (65%), Gaps = 3/226 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GR+ N +R I +T + EGS L+ G+T ++ +A++E KVP ++R GWI+ Sbjct: 1 MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ Sbjct: 61 AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA++A+ + +++ + +K +AA S G+L G ++DL+Y Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 EDS VD N +MT SG VE+QG+ E ATFS+ ++ L K Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKK 224 >gi|291005562|ref|ZP_06563535.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338] Length = 237 Score = 301 bits (771), Expect = 7e-80, Method: Composition-based stats. Identities = 103/226 (45%), Positives = 147/226 (65%), Gaps = 1/226 (0%) Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 + +TR + GS LV+FG T +L A+++E VP W + GW+TAEY MLP ST R Sbjct: 1 MRITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTAEYAMLPSSTNTR 60 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 RE+V GR GGR+ EI R++GR+LR+ +DL+ALG I +DCDVIQADGGTRTAAITGA Sbjct: 61 SARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQADGGTRTAAITGA 120 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 +VAL D + + + + + L +AA+S G++ G +DL Y EDS +VD N V Sbjct: 121 YVALADAITWL-SAAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVA 179 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 TD G +VEVQG+ E ATF++ M++ A ++L ++Q + ++ Sbjct: 180 TDHGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALA 225 >gi|85708632|ref|ZP_01039698.1| RNase PH [Erythrobacter sp. NAP1] gi|85690166|gb|EAQ30169.1| RNase PH [Erythrobacter sp. NAP1] Length = 227 Score = 301 bits (771), Expect = 7e-80, Method: Composition-based stats. Identities = 119/229 (51%), Positives = 156/229 (68%), Gaps = 2/229 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR I++ +K+AEGSCL+ FGDT +L TA++EE++P W+R GW+T EY MLPR+T Sbjct: 1 MRTITIETGYTKHAEGSCLISFGDTKVLCTASVEERIPPWLRGKGEGWVTGEYSMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+Q GR+QEIQR+IGR+LR+VVDL LG RQI +DCDVIQADGGTRTA+I Sbjct: 61 HTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQITLDCDVIQADGGTRTASI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 +GAWVAL + + + + G VAAISCG+ G P++DLDY EDS+ D DAN Sbjct: 121 SGAWVALRLAVSKL--MAEGAIKEDPITGQVAAISCGIFEGTPVLDLDYDEDSSADADAN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 FV+ D G I EVQ +AE AT+ ++ +L LA + K Q D + Sbjct: 179 FVLIDGGQIAEVQATAEGATYDEEGLLRLLRLANIGCDAIFKAQLDAVK 227 >gi|255522701|ref|ZP_05389938.1| ribonuclease PH [Listeria monocytogenes FSL J1-175] Length = 229 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 104/224 (46%), Positives = 151/224 (67%), Gaps = 3/224 (1%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 + EGS L+ G+T ++ +A++E KVP ++R GWI+AEY MLPR+T R RE+ Sbjct: 1 YLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESS 60 Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139 G+ GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQADGGTRTA+ITGA++A+ Sbjct: 61 KGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVM 120 Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVDANFVMTDSGH 198 + +++ + +K +AA S G+L G ++DL+Y EDS VD N +MT SG Sbjct: 121 AIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGA 178 Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 VE+QG+ E ATFS+ ++ L K I++LI++QK+ + ++V Sbjct: 179 FVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 222 >gi|88808003|ref|ZP_01123514.1| Ribonuclease PH [Synechococcus sp. WH 7805] gi|88788042|gb|EAR19198.1| Ribonuclease PH [Synechococcus sp. WH 7805] Length = 340 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 100/240 (41%), Positives = 151/240 (62%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ +++R ++ +A S +V+ G T +L + E+ VP W R+ GW++A Sbjct: 105 RKDGRQASELRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEQGVPRWRRDQGLGWLSA 164 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R +RE + + GR+QEIQR+IGR+LR+ + + ALG +++DCDVIQA Sbjct: 165 EYRLLPGSTPERQRREWL--KLSGRTQEIQRLIGRSLRAALSMEALGENTLLVDCDVIQA 222 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAW+ALH + S + ++ VAA+S G+L G ++DLDY E Sbjct: 223 DAGTRTASITGAWLALHHACASL--VSQGLIPANPVRAQVAAVSVGLLQGEALLDLDYSE 280 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N VM SG ++E+QG+AE ATFS+ +L+ A+ + L++ Q + + + Sbjct: 281 DSQADVDLNVVMNASGELLELQGTAEGATFSRQQLNLLLDRAEPGLKQLMRAQNEALRTQ 340 >gi|154500957|ref|ZP_02038995.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC 29799] gi|150269981|gb|EDM97500.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC 29799] Length = 238 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 104/239 (43%), Positives = 153/239 (64%), Gaps = 3/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R I + ++K+AEGSCL++ G+TH+L TA++E++VP + GW+TA Sbjct: 3 RIDGRANDQLRPIEIIPGINKFAEGSCLIRCGNTHVLCTASVEDRVPPHV-PEGEGWVTA 61 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+ R KR+ + RS EIQR++GR+LR+ VD+ ALG R I +DCDV+Q Sbjct: 62 EYSMLPRANRERSKRDIAKLKLSARSAEIQRLVGRSLRAAVDMKALGPRTITVDCDVLQG 121 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA++TG +VAL L + + + LK VAAIS G++ ++DL Y E Sbjct: 122 DGGTRTASVTGGFVALSFALHKLVE--EGVLEAMPLKTCVAAISAGIVDDQLLLDLCYEE 179 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS+ VD N VMT G +VE+QG+ E +F+ + A++ L I D+ +QK V+ Sbjct: 180 DSSAQVDLNCVMTGEGELVELQGTGEGRSFTLEEQRALVELCAKGIRDVQAVQKAVLGG 238 >gi|170078680|ref|YP_001735318.1| ribonuclease PH [Synechococcus sp. PCC 7002] gi|169886349|gb|ACB00063.1| ribonuclease PH [Synechococcus sp. PCC 7002] Length = 240 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 98/239 (41%), Positives = 144/239 (60%), Gaps = 6/239 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL R +Q+R +K+A+ S L GDT +L T ++EE VP ++R++ GW+TA Sbjct: 5 RLDNRFFDQLRPFKFELDFTKFAQASVLTSCGDTKVLCTVSVEEGVPPFLRDSGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY M+P +T R +RE + + GR+QEIQR+IGR+LR+ +DL ALG R I ID DV+QA Sbjct: 65 EYRMMPGATPERQRREFM--KLSGRTQEIQRLIGRSLRAAIDLKALGERTITIDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRT AITG +V L + + + VAAIS G++ G +DL+Y E Sbjct: 123 DGGTRTTAITGGYVGLAIACERLVKAG--ILGKSPIIAPVAAISVGLIAGQAYLDLNYLE 180 Query: 182 DSTIDVDANFVMTD--SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D DVD N VM +++EVQG+AE ++++ +L++A+ I ++ LQ I Sbjct: 181 DVAADVDFNVVMIGGQGLNLIEVQGTAEAGSYNRAQLNQILDVAEKGIQTIMTLQTKAI 239 >gi|108800808|ref|YP_641005.1| ribonuclease PH [Mycobacterium sp. MCS] gi|119869948|ref|YP_939900.1| ribonuclease PH [Mycobacterium sp. KMS] gi|126436406|ref|YP_001072097.1| ribonuclease PH [Mycobacterium sp. JLS] gi|123368907|sp|Q1B585|RNPH_MYCSS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228293|sp|A3Q379|RNPH_MYCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|166228294|sp|A1UJV2|RNPH_MYCSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|108771227|gb|ABG09949.1| RNAse PH [Mycobacterium sp. MCS] gi|119696037|gb|ABL93110.1| RNAse PH [Mycobacterium sp. KMS] gi|126236206|gb|ABN99606.1| RNAse PH [Mycobacterium sp. JLS] Length = 260 Score = 298 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 111/237 (46%), Positives = 159/237 (67%), Gaps = 1/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++++R + +TR + + GS LV+FG+T ++ TA++ E VP W + T GW+TA Sbjct: 4 REDGRLDDELRPVRITRGFTSHPAGSVLVEFGETRVMCTASVTEGVPRWRKGTGQGWLTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T +R RE+V GR GGR+QEI R+IGR+LR+ +DL+ALG I IDCDV+QA Sbjct: 64 EYAMLPAATHDRSDRESVKGRVGGRTQEISRLIGRSLRACIDLNALGENTIAIDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + ++ + K + L +AA+S G++ G VDL Y E Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-AAAEKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYSE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS +VD N V TD+G +VE+QG+ E ATF + +L+LA L +Q++ + Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDLALASCDQLFVVQREAL 239 >gi|257126136|ref|YP_003164250.1| ribonuclease PH [Leptotrichia buccalis C-1013-b] gi|257050075|gb|ACV39259.1| ribonuclease PH [Leptotrichia buccalis C-1013-b] Length = 231 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 114/233 (48%), Positives = 158/233 (67%), Gaps = 2/233 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R+ ++MRE+ +T+ + EGS L++FG+T ++ AT+EEK+P W+R T GWIT Sbjct: 1 MRNNNRKNDEMREVKVTKNYIIHPEGSVLIEFGNTKVICNATVEEKIPRWLRGTGSGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T RV+RE+ G+ GR+ EIQR+IGRALR+ +DL LG R I+IDCDVIQ Sbjct: 61 AEYSMLPRATNTRVQRESTKGKLSGRTMEIQRLIGRALRATIDLEKLGERTIMIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA++AL ++ + D + +K VAAIS G + ++DL+Y Sbjct: 121 ADGGTRTASITGAYLALELAIEKLID--ERKLKEMPIKAKVAAISVGKVRNELLLDLEYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS DVD N VM D G +E+QG+ E ATF+Q + L+K+ L KL Sbjct: 179 EDSRADVDMNIVMNDKGEFIELQGTGEEATFTQTELLKFIELSKNAFDKLFKL 231 >gi|284989916|ref|YP_003408470.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160] gi|284063161|gb|ADB74099.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160] Length = 250 Score = 298 bits (763), Expect = 6e-79, Method: Composition-based stats. Identities = 112/239 (46%), Positives = 152/239 (63%), Gaps = 1/239 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +++TR +AEGS LV+FG T +L A++ E VP W + + GW+TA Sbjct: 9 RPDGRAADQLRPVTITRGWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 68 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL ALG + IDCDV+QA Sbjct: 69 EYAMLPRATHTRGDRESVKGRIGGRTHEISRLIGRSLRAAIDLGALGENSVAIDCDVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + K + + VAA+S G++ G P +DL Y E Sbjct: 129 DGGTRTAAITGAYVALADAVGWLGE-RRKLARPRAVLQSVAAVSVGVVDGQPRLDLAYEE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D N V T G VEVQG+AE F + A+L+LA A+L ++Q D + Sbjct: 188 DVRAGTDMNVVCTGDGSFVEVQGTAENGVFDRAALDALLDLAVGGCAELSRIQADALQQ 246 >gi|284053737|ref|ZP_06383947.1| ribonuclease PH [Arthrospira platensis str. Paraca] Length = 241 Score = 298 bits (763), Expect = 6e-79, Method: Composition-based stats. Identities = 94/238 (39%), Positives = 144/238 (60%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +Q+R + +++A S L K G+T +L T T++ VP ++++T GW+TA Sbjct: 5 RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+QEIQR+IGR+LR+ VDL A+G + +D DV+QA Sbjct: 65 EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +I G +VAL M + +AAIS GM+ G ++DL+Y E Sbjct: 123 DAGTRTTSINGGFVALAHAFNKMVKRGEL--KRSPIIHQIAAISVGMMHGEALLDLNYQE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D+D N VM D I+E+QG+AE + +++ +L+ A+ I +L +LQ+ V+ Sbjct: 181 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVLG 238 >gi|320096011|ref|ZP_08027624.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977082|gb|EFW08812.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 255 Score = 297 bits (762), Expect = 7e-79, Method: Composition-based stats. Identities = 111/239 (46%), Positives = 151/239 (63%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +S+TR S EGS L++FG T +L A+ VP W R++ GW+TA Sbjct: 7 RADGRAPDQLRPVSITRGWSGTGEGSVLIEFGATRVLCVASFTTGVPRWKRDSGEGWVTA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+QEI R+IGR+LR VVD ALG + +DCDV++A Sbjct: 67 EYAMLPRATDQRSPRESVKGRVGGRTQEISRLIGRSLRGVVDTRALGENTVTLDCDVLRA 126 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA++TGA++AL D + + ++VL V+AIS G++ G P++DL Y E Sbjct: 127 DGGTRTASVTGAYIALADAVAWAKRNGAVSPGAKVLTDSVSAISVGIVDGAPVLDLPYAE 186 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D N V T G +EVQG+AE A FS+ A+L+LA A L Q+ +S Sbjct: 187 DVRAHTDMNVVQTGDGRFIEVQGTAEHAPFSRAELSALLDLAALGNARLADAQRAALSG 245 >gi|312199598|ref|YP_004019659.1| ribonuclease PH [Frankia sp. EuI1c] gi|311230934|gb|ADP83789.1| ribonuclease PH [Frankia sp. EuI1c] Length = 250 Score = 297 bits (762), Expect = 8e-79, Method: Composition-based stats. Identities = 111/235 (47%), Positives = 147/235 (62%), Gaps = 7/235 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R++++ R AEGS L+ FG T +L A++ E VP W + + GW+TA Sbjct: 3 RHDGRAADQLRDVTIVRGWQDQAEGSALINFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL LG I IDCDV+ A Sbjct: 63 EYSMLPRATNTRNDRESVKGRIGGRTHEISRLIGRSLRACIDLKQLGENTIAIDCDVLLA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITGA+VAL D + + + G V+A+S G++ G P++DL Y E Sbjct: 123 DGGTRTAAITGAYVALADACGWLGR-------PKAISGGVSAVSVGVVGGVPMLDLAYVE 175 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 DS D D N V TD+G VEVQG+AE F + +L+LA A L K Q D Sbjct: 176 DSAADTDMNVVCTDTGSFVEVQGTAEGVVFDRAMLDQLLDLAVAGCAQLAKAQAD 230 >gi|291567427|dbj|BAI89699.1| ribonuclease PH [Arthrospira platensis NIES-39] Length = 242 Score = 297 bits (762), Expect = 8e-79, Method: Composition-based stats. Identities = 94/238 (39%), Positives = 144/238 (60%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +Q+R + +++A S L K G+T +L T T++ VP ++++T GW+TA Sbjct: 6 RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R RE + + GR+QEIQR+IGR+LR+ VDL A+G + +D DV+QA Sbjct: 66 EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +I G +VAL M + +AAIS GM+ G ++DL+Y E Sbjct: 124 DAGTRTTSINGGFVALAHAFNKMVKRGEL--KRSPIIHQIAAISVGMMHGEALLDLNYQE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D+D N VM D I+E+QG+AE + +++ +L+ A+ I +L +LQ+ V+ Sbjct: 182 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVLG 239 >gi|296122989|ref|YP_003630767.1| ribonuclease PH [Planctomyces limnophilus DSM 3776] gi|296015329|gb|ADG68568.1| ribonuclease PH [Planctomyces limnophilus DSM 3776] Length = 239 Score = 297 bits (762), Expect = 8e-79, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 152/243 (62%), Gaps = 7/243 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57 MR GRQ +++R I + R+ +K A GS L+ GDT LL TA+++E +P W + G Sbjct: 1 MRHDGRQPDELRPIRIQRQFTKVAPGSVLISAGDTTLLVTASIDETLPPWKAADPAAQKG 60 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 W+TAEY MLP ST R +RE + GRS EIQR+IGR+LR+ VD LG R I+ID + Sbjct: 61 WLTAEYCMLPGSTSPRKRRE--REKVDGRSTEIQRLIGRSLRACVDFETLGPRTIMIDVE 118 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+QADGGTRT ITG ++AL D + + D + VL +AA+S G+ G PI+DL Sbjct: 119 VLQADGGTRTLGITGGYIALCDAIATLGD--KVSKDRPVLTTSIAAVSVGISHGTPILDL 176 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DY EDS +VD N VMT SG +E+QG+AE +F++ L LA+ I L++LQ+ Sbjct: 177 DYIEDSQAEVDLNVVMTGSGEFIEIQGTAEGRSFTRAQLDQQLALAEKGIRQLMELQQAA 236 Query: 238 ISN 240 + Sbjct: 237 LKG 239 >gi|241190345|ref|YP_002967739.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195751|ref|YP_002969306.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140] gi|240248737|gb|ACS45677.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250305|gb|ACS47244.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793332|gb|ADG32867.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis V9] Length = 230 Score = 297 bits (761), Expect = 8e-79, Method: Composition-based stats. Identities = 100/216 (46%), Positives = 138/216 (63%) Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 + +TR + EGS L++ G+T ++ TAT + VP W +++ GW+TAEY MLPR+T R Sbjct: 1 MRITRAFTDVPEGSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTAEYSMLPRATAQR 60 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 RE+V G+ GGR+ EI R+IGR LR V+D+ ALG I +DCDV+QADGGTRTA+ITGA Sbjct: 61 TDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQADGGTRTASITGA 120 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 VAL D L + + VL V+A+S G++ G P++DL Y EDS D N M Sbjct: 121 HVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVEDSRAMTDMNVAM 180 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 T SG VE+QG+AE FS++ +L+LA + Sbjct: 181 TGSGKFVEIQGTAEHRPFSRNELGVLLDLATKGNRE 216 >gi|300813206|ref|ZP_07093574.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512659|gb|EFK39791.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 238 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 107/237 (45%), Positives = 147/237 (62%), Gaps = 3/237 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR RQ +++REI ++ A+GS L++ G+T ++ TA +EEKVP ++R + GW++ Sbjct: 1 MRTD-RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVS 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST R R+ G+Q GR EIQR+IGR+LR VDL ALG R I +DCDVI Sbjct: 60 AEYSMLPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVIN 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +I G+++AL + NK +K V +IS G + G +VDLDY Sbjct: 120 ADGGTRTTSINGSYIALEMAVNK--ALKNKKLEVNPIKCKVGSISVGKVKGIKLVDLDYK 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS DVD N VM D I+E+QG++ER TF+ + L A+ I D+ K + V Sbjct: 178 EDSNADVDLNLVMNDKFEIIEIQGTSERDTFTTEELAEFLKFAQIGIKDIFKYMEIV 234 >gi|115377533|ref|ZP_01464733.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1] gi|115365473|gb|EAU64508.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1] Length = 276 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 114/239 (47%), Positives = 149/239 (62%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R +R ++LT VS++AEGS V+FG T ++ T ++EE+VP + GW+T Sbjct: 40 VRSFQRGVLDLRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVT 99 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+ EIQR+IGR++R+ V+LS LG R + +DCDVIQ Sbjct: 100 AEYGMLPRSTHTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQ 159 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL L+ + S +AA+S G++ G VDLDY Sbjct: 160 ADGGTRTASITGAYVALVMALRSL--NSKGTLSRMPSLTPLAAVSVGVVKGEVRVDLDYE 217 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N V T G IVEVQG+AE F + AML+ I L Q V+ Sbjct: 218 EDSAADVDLNLVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKVLG 276 >gi|257063633|ref|YP_003143305.1| RNAse PH [Slackia heliotrinireducens DSM 20476] gi|256791286|gb|ACV21956.1| RNAse PH [Slackia heliotrinireducens DSM 20476] Length = 240 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 114/238 (47%), Positives = 155/238 (65%), Gaps = 5/238 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R + +R ++L R V K A GSCLVKFGDTH+L AT+EE+VP W +N+ GW+TA Sbjct: 5 RVDNRADRAIRPVTLERGVMKNATGSCLVKFGDTHVLCAATIEERVPGWRKNSGLGWVTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-GSRQIIIDCDVIQ 120 EY MLP ST R RE + GRSQEI+R+IGR+LR+V D+ A+ G + +DCDV+Q Sbjct: 65 EYAMLPASTSKRTPREYKGRK--GRSQEIERLIGRSLRNVCDMGAMGGEVLMTVDCDVLQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVA +D + L G VAAIS GM+ G ++DLDY Sbjct: 123 ADGGTRTASITGAWVAAYDAFEMWRKSGK--CKRNPLFGQVAAISVGMVGGRLLLDLDYR 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS ++D N VM G +E+QG+ E+A F + ML++A+ I +L+ LQ+ + Sbjct: 181 EDSKAEIDMNVVMNAKGEFIEIQGTGEQAPFGKATLDDMLSMAQSGIEELLALQRAAV 238 >gi|284043327|ref|YP_003393667.1| ribonuclease PH [Conexibacter woesei DSM 14684] gi|283947548|gb|ADB50292.1| ribonuclease PH [Conexibacter woesei DSM 14684] Length = 245 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 112/229 (48%), Positives = 148/229 (64%), Gaps = 2/229 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +R +S + A GS L+ G+T ++ TA++EE VP W+ GW+TA Sbjct: 5 RSYGRTAEGLRPVSFEPGFVRSATGSALIAIGETRVICTASVEESVPRWMTGRGTGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLP STG R R+ GR GR+ EIQR+IGR+LR VVD SALG R + +DCDV+QA Sbjct: 65 EYGMLPASTGQRKARDVTKGRADGRTVEIQRLIGRSLRGVVDFSALGERTVYVDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITG +VAL + + ++ L G VAA+S G++ G P++DLDY E Sbjct: 125 DGGTRCASITGGFVALQLACERL--VADGLLERLPLTGSVAAVSAGIVDGVPLLDLDYPE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 DST +VDAN VMT G +VEVQ +AER S+ H +L LA+ IA+L Sbjct: 183 DSTAEVDANVVMTGEGGLVEVQATAERTPLSRAHLDDLLALAERGIAEL 231 >gi|113954193|ref|YP_729551.1| ribonuclease PH [Synechococcus sp. CC9311] gi|113881544|gb|ABI46502.1| ribonuclease PH [Synechococcus sp. CC9311] Length = 241 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 97/238 (40%), Positives = 146/238 (61%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +R S++ +A S ++ G T +L + +E VP W ++ GW++A Sbjct: 6 RNDGRRPGDLRPFSISWDPMGFALSSVIIHSGRTTVLCSVCHQEGVPRWRKDQGKGWLSA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+ +D+ ALG + IDCDVIQA Sbjct: 66 EYRLLPGSTPERQNRELL--KLSGRTQEIQRLIGRSLRAAIDMEALGENTLRIDCDVIQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAI+G+WVAL + + + ++ VAA+S G++ P++DLDY E Sbjct: 124 DAGTRTAAISGSWVALQRACERLVQ--QGVLNTNPVQSQVAAVSVGVIHKRPLLDLDYSE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS DVD N VM GH++E+QG+AE A FS+ +L+LA+ + ++ Q+ +S Sbjct: 182 DSQADVDLNVVMNGEGHLLELQGTAEGAPFSRHQLNDLLDLAEPGLKKIMDDQRAALS 239 >gi|219850495|ref|YP_002464928.1| ribonuclease PH [Chloroflexus aggregans DSM 9485] gi|219544754|gb|ACL26492.1| ribonuclease PH [Chloroflexus aggregans DSM 9485] Length = 250 Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 105/230 (45%), Positives = 146/230 (63%), Gaps = 4/230 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q+R I++ + YAEGS L+ +G+T +L TAT+E+ VP W+R + GW+T Sbjct: 2 VRRDGRAPDQLRPITIEIGAAPYAEGSALIAYGNTRVLCTATIEDGVPAWMRGQQGGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE GR+QEIQR+IGRALR+ +DL A+G R I IDCDV+Q Sbjct: 62 AEYAMLPRATLQRSRRE--RNGPSGRTQEIQRLIGRALRAAIDLHAIGERTITIDCDVLQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I+G +VAL + H+ + +AA+S GM+ ++DL Y Sbjct: 120 ADGGTRTASISGGYVALALAVDHLVRSGAV--ETYPTLTPLAAVSVGMIQDTLLLDLCYE 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 EDS D+D N VM + VEVQ +AER S+ A+L+LA I + Sbjct: 178 EDSQADLDCNVVMNINSAFVEVQATAERTPVSRAQLDALLDLAARGIQQI 227 >gi|282882977|ref|ZP_06291581.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B] gi|281297184|gb|EFA89676.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B] Length = 238 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 107/237 (45%), Positives = 147/237 (62%), Gaps = 3/237 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR RQ +++REI ++ A+GS L++ G+T ++ TA +EEKVP ++R + GW++ Sbjct: 1 MRTD-RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVS 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST R R+ G+Q GR EIQR+IGR+LR VDL ALG R I +DCDVI Sbjct: 60 AEYSMLPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVIN 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +I G+++AL + NK +K V +IS G + G +VDLDY Sbjct: 120 ADGGTRTTSINGSYLALEMAVNK--ALKNKRLEVNPIKCKVGSISVGKVKGIKLVDLDYK 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS DVD N VM D I+E+QG++ER TF+ + L A+ I D+ K + V Sbjct: 178 EDSNADVDLNLVMNDKFEIIEIQGTSERDTFTAEELAEFLKFAQIGIKDIFKYMEIV 234 >gi|61216057|sp|Q8DLA4|RNPH_THEEB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase Length = 242 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ ++R R +++A GS L + G T +L T + +E VP ++ T GW+TA Sbjct: 5 RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LRS VDLS LG +I+D DV+QA Sbjct: 65 EYRMLPSATRPRQEREFL--KLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTR+ AITG ++AL D L + L+ VAA+S G++ P +DL Y E Sbjct: 123 DAGTRSLAITGGYIALVDALSAL--LQQGVLRKSPLRHQVAAVSVGLIDDEPYLDLSYAE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D VD N VMT SG +EVQG+AE +F + +L++A+ I +LI++Q+ V++ Sbjct: 181 DVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRVLA 238 >gi|310820087|ref|YP_003952445.1| ribonuclease ph [Stigmatella aurantiaca DW4/3-1] gi|309393159|gb|ADO70618.1| Ribonuclease PH [Stigmatella aurantiaca DW4/3-1] Length = 237 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 149/239 (62%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +R ++LT VS++AEGS V+FG T ++ T ++EE+VP + GW+T Sbjct: 1 MRSFQRGVLDLRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPRST R REA G+Q GR+ EIQR+IGR++R+ V+LS LG R + +DCDVIQ Sbjct: 61 AEYGMLPRSTHTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL L+ + S +AA+S G++ G VDLDY Sbjct: 121 ADGGTRTASITGAYVALVMALRSL--NSKGTLSRMPSLTPLAAVSVGVVKGEVRVDLDYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS DVD N V T G IVEVQG+AE F + AML+ I L Q V+ Sbjct: 179 EDSAADVDLNLVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKVLG 237 >gi|282900962|ref|ZP_06308895.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505] gi|281194053|gb|EFA69017.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505] Length = 246 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 149/239 (62%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GRQ +Q+R ++ +++A GS L + G+T +L T ++ E VP ++ + GW+TA Sbjct: 5 RLDGRQPDQLRTLNFYPHFTRFAPGSVLAQCGETQVLCTVSITEGVPKFLMGSGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ ++ LG + + +D DV+QA Sbjct: 65 EYRMLPSATQQRQERELL--KLSGRTQEIQRLIGRSLRAALNFEILGEKTLTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRT +ITG ++AL + H+ L G +AA+S G+L G +DLD+ E Sbjct: 123 DAGTRTISITGGFIALAHAITHL--LQQGVLERSPLCGQIAAVSVGLLKGEAFLDLDFTE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D +VD N VM +I+EVQG+AE +FS+ +L++A+ I +L+ Q+ VI + Sbjct: 181 DVNAEVDFNVVMNSKLNIIEVQGTAEAGSFSRQQLNQLLDVAETGIRELLIAQRSVIPD 239 >gi|162147173|ref|YP_001601634.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5] gi|161785750|emb|CAP55321.1| putative Ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5] Length = 275 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 118/237 (49%), Positives = 157/237 (66%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R IS+ + +AEGS L++ G T +L AT+E +VP ++R GW+TA Sbjct: 31 RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTA 90 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG I +DCDV+ A Sbjct: 91 EYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNA 150 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVAL L+ + N+ L VAA+SCG+ ++DLDY E Sbjct: 151 DGGTRCASITGAWVALRLALETLVR--NRVLARLPLTAQVAAVSCGLTGAGAVLDLDYDE 208 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS DANFV+T++G IVE+Q +AE A F+QD F +L LA+ A L Q+ + Sbjct: 209 DSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQRQAV 265 >gi|148656132|ref|YP_001276337.1| ribonuclease PH [Roseiflexus sp. RS-1] gi|148568242|gb|ABQ90387.1| RNAse PH [Roseiflexus sp. RS-1] Length = 245 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 152/239 (63%), Gaps = 4/239 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +R + +T YAEGS L++ G+T +L TA++EE VP W+R + GW+T Sbjct: 2 VRNDGRAPADLRPVRITIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQRGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY +LPRST R +RE GR+QEIQR+IGRALR+ V L AL + +DCDV+Q Sbjct: 62 GEYALLPRSTAQRTRRE--RNGVSGRTQEIQRLIGRALRAAVSLEALDGFTVTVDCDVLQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL L + + S L+ VAA+S G + G ++DLDY Sbjct: 120 ADGGTRTASITGGYVALALALHRL--TAEGRLASNPLQRAVAAVSAGYVAGCALLDLDYS 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS D+D N V+TD G IVEVQ +AE S+ F A+++LA D I L+ +Q+ ++ Sbjct: 178 EDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDALIDLATDGIRRLLAIQRAALA 236 >gi|229815851|ref|ZP_04446175.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM 13280] gi|229808546|gb|EEP44324.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM 13280] Length = 244 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 121/236 (51%), Positives = 162/236 (68%), Gaps = 4/236 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R +GR NQMR ++LTR V K+A GSCLV+FGDT +L AT+EE VP W + + GW+TA Sbjct: 8 RANGRAANQMRTVNLTRDVMKHALGSCLVEFGDTKVLCAATIEEGVPGWRKASHQGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP ST R +RE + + GRS EI+R+IGR+LR+VV++ +LG + +DCDVIQA Sbjct: 68 EYAMLPASTNRRTRRETNNRK--GRSMEIERLIGRSLRTVVNMKSLGEHTVTVDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGAWVALHD L + +L L G VAA+S G++ G ++DLDY E Sbjct: 126 DGGTRTASITGAWVALHDALMAWVEAGKIARL--PLTGQVAAVSMGLVDGCELLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DS +VD N V TD+G I+E+QG+ E+ F + +L+L + I LI LQ +V Sbjct: 184 DSHAEVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEV 239 >gi|87200077|ref|YP_497334.1| ribonuclease PH [Novosphingobium aromaticivorans DSM 12444] gi|87135758|gb|ABD26500.1| RNAse PH [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 118/229 (51%), Positives = 157/229 (68%), Gaps = 2/229 (0%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR IS+ +K+AEGS L+ FGDT +L TA++EE+VP ++R GW+TAEY MLPR+T Sbjct: 1 MRAISIETAFTKHAEGSVLICFGDTKVLVTASVEERVPPFLRGKGEGWVTAEYSMLPRAT 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R REA G+Q GR+QEIQR+IGR+LR+V DL LG RQI +DCDVIQADGGTRTAAI Sbjct: 61 HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQADGGTRTAAI 120 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 +GAWVAL +Q + D L VAA+SCG++ G P++DLDY EDS+ D DAN Sbjct: 121 SGAWVALRLAVQKLLDSG--AIKEDPLTEKVAAVSCGIVNGQPVLDLDYIEDSSADADAN 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 FV+ + G I E Q +AE AT+ ++ +L LA+ A++ Q+ + Sbjct: 179 FVLIEGGKIAEAQATAEGATYDEEGLLRLLRLARMGCAEIFAAQEKAVR 227 >gi|22298135|ref|NP_681382.1| ribonuclease PH [Thermosynechococcus elongatus BP-1] gi|22294313|dbj|BAC08144.1| ribonuclease PH [Thermosynechococcus elongatus BP-1] Length = 249 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ ++R R +++A GS L + G T +L T + +E VP ++ T GW+TA Sbjct: 12 RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTA 71 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LRS VDLS LG +I+D DV+QA Sbjct: 72 EYRMLPSATRPRQEREFL--KLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQA 129 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTR+ AITG ++AL D L + L+ VAA+S G++ P +DL Y E Sbjct: 130 DAGTRSLAITGGYIALVDALSAL--LQQGVLRKSPLRHQVAAVSVGLIDDEPYLDLSYAE 187 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D VD N VMT SG +EVQG+AE +F + +L++A+ I +LI++Q+ V++ Sbjct: 188 DVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRVLA 245 >gi|51245125|ref|YP_065009.1| ribonuclease PH [Desulfotalea psychrophila LSv54] gi|61215901|sp|Q6ANS2|RNPH_DESPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|50876162|emb|CAG36002.1| probable ribonuclease PH [Desulfotalea psychrophila LSv54] Length = 236 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 107/236 (45%), Positives = 152/236 (64%), Gaps = 4/236 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + R +R IS+ R V +A+ S L++ G+TH++ ++EE VP ++R + GWIT Sbjct: 3 MRQNNRTAESLRPISIERGVQLHADASVLIRMGNTHVICGVSVEESVPPFMRGSGKGWIT 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP +T +R +RE GR+ EIQR+IGR+LR +VDL +G R + +DCDV+ Sbjct: 63 AEYGMLPCATDSRYRRETNGR--SGRTMEIQRLIGRSLRMMVDLETIGERTLRVDCDVLN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +AL D + ++ +++ V AIS GM G ++DLDY Sbjct: 121 ADGGTRTASITGGALALRDAFTKLHTTGLLEKMPEIM--PVVAISVGMKDGQALLDLDYV 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS+ D DANFVM G +EVQ +AE FS D F AM +LA+ A+L++L +D Sbjct: 179 EDSSADADANFVMAGDGRWIEVQSTAEGRPFSHDQFLAMADLAQKGSAELLQLWRD 234 >gi|51891481|ref|YP_074172.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium thermophilum IAM 14863] gi|61215887|sp|Q67SL5|RNPH_SYMTH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|51855170|dbj|BAD39328.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium thermophilum IAM 14863] Length = 273 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++MR + +TR + +AEGS L++ G T ++ TATLE++VP ++R GWIT Sbjct: 1 MRQDGRLPHEMRPVRITRHYNIHAEGSVLIEVGRTRVICTATLEDRVPPFLRGRGEGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+TG R REA GRQGGR+ EIQR+IGRALRSV+DL+ALG R +IIDCDVIQ Sbjct: 61 AEYGMLPRATGQRTAREAARGRQGGRTMEIQRLIGRALRSVIDLAALGERTLIIDCDVIQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VA+ D L + +K ++AA S G++ G P++DL Y Sbjct: 121 ADGGTRTASITGAYVAMVDALAGLRAAG--LIDRLPVKDYLAATSVGVVGGVPVLDLTYE 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS VD N VMT SG +VE+QG+ E F++ +L LA+ + L+ LQ++ + Sbjct: 179 EDSRAAVDLNLVMTGSGEVVEIQGTGEERPFTRRELEELLALAESGVRRLVALQREQLG 237 >gi|149198134|ref|ZP_01875181.1| ribonuclease PH [Lentisphaera araneosa HTCC2155] gi|149138736|gb|EDM27142.1| ribonuclease PH [Lentisphaera araneosa HTCC2155] Length = 238 Score = 294 bits (754), Expect = 7e-78, Method: Composition-based stats. Identities = 103/232 (44%), Positives = 141/232 (60%), Gaps = 5/232 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR+ GRQ +Q+REI K + GS L G T ++ T +++ +P W + GW+T Sbjct: 1 MRVDGRQNDQLREIKFELGFVKNSLGSALSACGLTEVICTVNIKDGLPGWKSSGSGGWLT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP +T R KREA G GRS EIQR+IGR LR+ VDL LG R I IDCDV+ Sbjct: 61 AEYRMLPGATHTRSKREAGVG---GRSSEIQRLIGRTLRAAVDLDKLGDRTIQIDCDVLN 117 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+I GA +AL + L+ ME+ +S ++K ++AIS G++ G ++DL Y Sbjct: 118 ADGGTRCASINGAMLALMNALKKMEE--QGVDISGIIKTPLSAISVGVVKGQALLDLCYK 175 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS DVD N +MT G VEVQG+ E A FS+ +L+ + ++ Sbjct: 176 EDSAADVDMNVIMTAKGDFVEVQGTGEEAVFSRQELNELLDAGEKGTKEISA 227 >gi|156743859|ref|YP_001433988.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941] gi|156235187|gb|ABU59970.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941] Length = 261 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 110/242 (45%), Positives = 154/242 (63%), Gaps = 4/242 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + +R + ++ YAEGS L++ G+T +L TA++EE VP W+R + GW+T Sbjct: 2 IRNDGRAPSDLRPVRISIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQRGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY +LPRST R +RE GR+QEIQR+IGRALR+ V L AL + IDCDV+Q Sbjct: 62 AEYALLPRSTAQRTRRE--RNGLSGRTQEIQRLIGRALRAAVALEALDGFTVTIDCDVLQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITG +VAL L + + ++ VAA+S G + G ++DLDY Sbjct: 120 ADGGTRTASITGGYVALALALHRLTAAGRL--AANPIRRAVAAVSAGYVGGNALLDLDYS 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS D+D N V+TD G IVEVQ +AE S+ F +++LA D I L+ LQ++ ++ Sbjct: 178 EDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDVLIDLASDGIHRLLALQREALAP 237 Query: 241 EV 242 V Sbjct: 238 VV 239 >gi|260889914|ref|ZP_05901177.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254] gi|260860520|gb|EEX75020.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254] Length = 239 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 109/233 (46%), Positives = 156/233 (66%), Gaps = 2/233 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R + R+ ++MRE+ +T+ + EGS L++FG+T ++ AT+EEK+P W++ T GW+T Sbjct: 9 VRKNNRKNDEMREVKVTKNYIIHPEGSVLMEFGNTKVICNATVEEKIPRWLKGTGSGWVT 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T RV+RE+ G+ GR+ EIQR+IGRALR+ +DL LG R I+IDCDVIQ Sbjct: 69 AEYSMLPRATNARVQRESTKGKLSGRTMEIQRLIGRALRAAIDLEKLGERTIMIDCDVIQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA++AL ++ + D + +K VAAIS G + ++DL+Y Sbjct: 129 ADGGTRTASITGAYLALELAIEKLIDEGKLKDI--PIKSKVAAISVGKVRNELLLDLEYE 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS DVD N VM D G +E+QG+ E ATF+ + L+K+ L L Sbjct: 187 EDSRADVDMNIVMNDKGEFIELQGTGEEATFTHAELLKFIELSKNAFDKLFSL 239 >gi|260435940|ref|ZP_05789910.1| ribonuclease PH [Synechococcus sp. WH 8109] gi|260413814|gb|EEX07110.1| ribonuclease PH [Synechococcus sp. WH 8109] Length = 247 Score = 294 bits (753), Expect = 8e-78, Method: Composition-based stats. Identities = 101/240 (42%), Positives = 147/240 (61%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ Q+R S+ +A S +V G T +L + LE+KVP W + GW++A Sbjct: 8 RTDGRRPQQLRPFSVNWNPMGFALSSLVVHTGRTAVLCSVCLEDKVPRWRKGEGFGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+V+D+ LG R ++IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAW+AL + + D L VAA+S G++ G ++DLDY E Sbjct: 126 DAGTRTASITGAWLALDQACRSLVD--QGVLEQSPLIDQVAAVSVGLVDGQALLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V + G ++E+QG+AE A FS+ +L+LA+ + L++ Q+ + Sbjct: 184 DSRAEVDLNVVQSGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLTSLMQAQRQAFNEH 243 >gi|328953246|ref|YP_004370580.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109] gi|328453570|gb|AEB09399.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109] Length = 255 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 111/239 (46%), Positives = 158/239 (66%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R++ +T R AEG+ L+ G T ++ TAT+EE+VP +++++ GW+T Sbjct: 12 IRSEGRRLDELRQVKITPRYLSQAEGAVLISLGRTWVICTATVEERVPAFLQDSGQGWVT 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T +R R A G+ RSQEIQR+IGR+LR+VVDL ALG R I++DCDVIQ Sbjct: 72 AEYDMLPRATHSRHPRSANLGKPSSRSQEIQRLIGRSLRAVVDLDALGERTIVLDCDVIQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGA+VAL + L ++ + + + VAA+S G+ +VDLDY Sbjct: 132 ADGGTRTAAITGAFVALCEALAGLQR--QEIIATLPVLDQVAAVSVGLANDQILVDLDYQ 189 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS +VDANFV+T G +VEVQ + ER F ML A+ + L + Q+ + Sbjct: 190 EDSRAEVDANFVVTGRGQLVEVQATGERGPFRPALLLEMLERAQPALQRLRQAQEKALR 248 >gi|209544228|ref|YP_002276457.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5] gi|209531905|gb|ACI51842.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5] Length = 248 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 118/237 (49%), Positives = 157/237 (66%), Gaps = 2/237 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + +R IS+ + +AEGS L++ G T +L AT+E +VP ++R GW+TA Sbjct: 4 RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG I +DCDV+ A Sbjct: 64 EYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTR A+ITGAWVAL L+ + N+ L VAA+SCG+ ++DLDY E Sbjct: 124 DGGTRCASITGAWVALRLALETL--VRNRVLARLPLTAQVAAVSCGLTGAGAVLDLDYDE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 DS DANFV+T++G IVE+Q +AE A F+QD F +L LA+ A L Q+ + Sbjct: 182 DSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQRQAV 238 >gi|108758625|ref|YP_630239.1| ribonuclease PH [Myxococcus xanthus DK 1622] gi|122389586|sp|Q1DAT4|RNPH_MYXXD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|108462505|gb|ABF87690.1| ribonuclease PH [Myxococcus xanthus DK 1622] Length = 237 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 114/239 (47%), Positives = 152/239 (63%), Gaps = 2/239 (0%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R +R + LT VS+YAEGS V+FG T +L T + EE+VP + GW+T Sbjct: 1 MRSFQRGALDLRPVVLTPGVSRYAEGSVQVEFGHTKVLVTCSTEERVPPHLMGKGSGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T +R +RE+ G+Q GR+ EIQR+IGR+LR+ VDLS LG R + +DCDV+Q Sbjct: 61 AEYGMLPRATHSRNQRESAKGKQTGRTMEIQRLIGRSLRAAVDLSTLGPRTLTLDCDVLQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGA+VAL L+ ++ +L +AA+S G++ G VDLDY Sbjct: 121 ADGGTRTASITGAYVALVLALRSLQKAGTISKL--PKLTPLAAVSVGIVKGEVRVDLDYD 178 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDST DVD N V T G +VE+QG+AE F + AM++ I L Q V+ Sbjct: 179 EDSTADVDLNLVATADGRMVELQGTAEHQLFDRKALDAMVDGGLAAIQKLTAAQAQVLG 237 >gi|78211822|ref|YP_380601.1| RNAse PH [Synechococcus sp. CC9605] gi|123578898|sp|Q3AMY6|RNPH_SYNSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|78196281|gb|ABB34046.1| ribonuclease PH [Synechococcus sp. CC9605] Length = 247 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 101/240 (42%), Positives = 147/240 (61%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ Q+R S+T +A S +V G T +L + LE KVP W + GW++A Sbjct: 8 RTDGRRPEQLRPFSVTWNPMGFALSSLVVHTGRTAVLCSVCLEGKVPRWRKGEGLGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+V+D+ LG R ++IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAW+AL + + + L VAA+S G++ G ++DLDY E Sbjct: 126 DAGTRTASITGAWLALDQACRSLVE--QGVLEQSPLVDQVAAVSVGLVDGQALLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V G ++E+QG+AE A FS+ +L+LA+ ++ L++ Q+ + Sbjct: 184 DSRAEVDLNVVQAGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLSSLMQAQRQAFTEH 243 >gi|313887997|ref|ZP_07821675.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845952|gb|EFR33335.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 238 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 101/232 (43%), Positives = 141/232 (60%), Gaps = 3/232 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR RQ ++ R+I +T + +GS L++ G T ++ +A +E KVP ++R GW++ Sbjct: 1 MRED-RQNDEARQIRITPNYLDHPDGSVLIECGKTRVICSAMIENKVPGFLRGKNKGWLS 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +EY MLP ST R R+ G+ GRS EI R+IGRALR+ +DL +G R I IDCDVI Sbjct: 60 SEYSMLPGSTPTRKVRDISKGKLDGRSSEISRLIGRALRTCIDLDKIGERTIWIDCDVIS 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITG+++AL ++ NK + VAAIS G + G +VDLD+ Sbjct: 120 ADGGTRTAAITGSYIALKLAVKK--ALENKKFEEDPIVSKVAAISVGKVNGVKLVDLDFK 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 EDS DVD N VM D ++E+QG+ E+ TFS + L AK I ++ Sbjct: 178 EDSNADVDLNVVMNDDFQLIEIQGTGEKDTFSIEELNEFLLGAKRCIGEIFD 229 >gi|226226977|ref|YP_002761083.1| ribonuclease PH [Gemmatimonas aurantiaca T-27] gi|226090168|dbj|BAH38613.1| ribonuclease PH [Gemmatimonas aurantiaca T-27] Length = 247 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 109/237 (45%), Positives = 141/237 (59%), Gaps = 4/237 (1%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R +R +SL R YAEGSCL+ FG T +L A++E VP W + + GW+TAEY M Sbjct: 13 RSNEALRPVSLERGAVLYAEGSCLISFGKTRVLCAASVETGVPGWKKGSGEGWVTAEYAM 72 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LPR+T R RE + GGR+QEIQR+IGR++R+++D G I +DCDV+QADGGT Sbjct: 73 LPRATRTRSSRE--RQQVGGRTQEIQRLIGRSVRAMLDDYRFGEFTIKVDCDVLQADGGT 130 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 RTAAITGA VA+ D M +K VAAIS GM+ G +DLDY ED Sbjct: 131 RTAAITGACVAVQDAFNWMVSTGRIIA--SPVKRRVAAISVGMVDGEVRLDLDYEEDVRA 188 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 VD N VM+ G VEVQG+ E TFS+ +L A I L++ Q V++ V Sbjct: 189 GVDMNVVMSSEGRFVEVQGTGEHGTFSRQELDGLLGTAVAGIEQLLEAQTRVLAGPV 245 >gi|308234186|ref|ZP_07664923.1| RNAse PH [Atopobium vaginae DSM 15829] gi|328944441|ref|ZP_08241903.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829] gi|327491025|gb|EGF22802.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829] Length = 272 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 119/236 (50%), Positives = 154/236 (65%), Gaps = 4/236 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R +L R+V KYA+GSCL+ GDT +L +AT+E+ +P W + + GW++A Sbjct: 38 RSYGRSAFEARPCTLERQVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHLGWVSA 97 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP S R RE + GRS EI+R+IGR+LRSVVD S LG I IDCDV+QA Sbjct: 98 EYAMLPASAKRRTPREYKGRK--GRSMEIERLIGRSLRSVVDFSKLGEHTITIDCDVLQA 155 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+I GAWVALHD + M + + L G VAAIS G++ G +VDLDY E Sbjct: 156 DGGTRTASIVGAWVALHDACRKMVEADKIARC--PLTGQVAAISMGIVHGELLVDLDYPE 213 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DS DVD N VM D G +VE+QG+ ERAT S+ A+L+ ++ + L LQK V Sbjct: 214 DSNADVDLNVVMRDDGGLVEIQGTGERATLSRHDLNALLDASEPALTKLFALQKSV 269 >gi|992693|gb|AAB01514.1| RNase PH [Caulobacter crescentus CB15] Length = 238 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 118/233 (50%), Positives = 163/233 (69%), Gaps = 3/233 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +Q+R ++L V++YA + L+ FG T +L TAT+EE VP W+RN GW+T Sbjct: 1 MRPSERAPDQLRAVTLETGVNRYAR-ALLIGFGHTKVLVTATVEENVPGWMRNKGAGWVT 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLPR+T R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q Sbjct: 60 AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAITGAWVAL +++ D + + G VAA+SCG+ G P++DLDY Sbjct: 120 ADGGTRTAAITGAWVALRLATKYLLD--EGVLKTDPILGQVAAVSCGVFNGVPVLDLDYE 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS + D+NFV+T G IVE+Q + E F++ F ++ ++ + ++L Sbjct: 178 EDSNAEADSNFVLTGVGDIVEIQATGETRGFTRAEFESLYGAGREGVQRTVRL 230 >gi|33864097|ref|NP_895657.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313] gi|61216018|sp|Q7V4V8|RNPH_PROMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|33635681|emb|CAE22005.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313] Length = 244 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 104/240 (43%), Positives = 150/240 (62%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + MR + +T +A S +++ G T +L + +EE VP W + GW++A Sbjct: 8 RADGRLADVMRPLQITWDPMGFALSSLIIRTGRTSVLCSVCVEEGVPRWRKGQGKGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+V+D++ALG + IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQNRELL--KLSGRTQEIQRLIGRSLRAVIDMAALGETTLRIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAW+AL + + Q + VAA+S G++ YP++DLDY E Sbjct: 126 DAGTRTASITGAWIALKRGCDRLLE--QGLLTHQPVIEQVAAVSVGLVESYPLLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N VM +GH++E+QG+AE A FS++ +LNLA+ + L Q+ + E Sbjct: 184 DSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQAFQRSALMQE 243 >gi|148238656|ref|YP_001224043.1| ribonuclease PH [Synechococcus sp. WH 7803] gi|147847195|emb|CAK22746.1| Ribonuclease PH [Synechococcus sp. WH 7803] Length = 241 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 100/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ + +R ++ +A S +V+ G T +L + EE VP W R+ GW++A Sbjct: 6 RKDGRQASALRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEEGVPRWRRDQGLGWLSA 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R +RE + + GR+QEIQR+IGR+LR+ + + ALG ++IDCDVIQA Sbjct: 66 EYRLLPGSTPERQRREWL--KLSGRTQEIQRLIGRSLRAALSMEALGENTLLIDCDVIQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA++TGAW+AL + + + S + VAA+S G+L G ++DLDY E Sbjct: 124 DAGTRTASVTGAWLALQNACESLVK--QGVLQSNPVCSQVAAVSVGLLGGEALLDLDYSE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS DVD N VM DSG ++E+QG+AE FS+ +L+ A+ + L+ QK+ + Sbjct: 182 DSQADVDLNVVMNDSGELLELQGTAEGKAFSRQQLNLLLDRAEPGLKQLMDAQKEALR 239 >gi|116075628|ref|ZP_01472887.1| ribonuclease PH [Synechococcus sp. RS9916] gi|116066943|gb|EAU72698.1| ribonuclease PH [Synechococcus sp. RS9916] Length = 255 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 99/240 (41%), Positives = 144/240 (60%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +R ++ +A S +V+ G T +L + +E VP W + GW++A Sbjct: 17 RNDGRSAADLRPFAINWDPMGFAISSLIVRTGRTAVLCSVCHQEGVPRWRKGQGKGWLSA 76 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+ +D+ ALG ++IDCDVIQA Sbjct: 77 EYRLLPGSTPERQNRELL--KLSGRTQEIQRLIGRSLRACIDMEALGENTLLIDCDVIQA 134 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAWVAL + + Q + VAA+S G++ P++DLDY E Sbjct: 135 DAGTRTASITGAWVALKHACDQL--LAQGLVTRQPITKQVAAVSVGLVNSAPLLDLDYSE 192 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N VM + H++E+QG+AE A FS+ +L+LA+ + L+ Q+ + N Sbjct: 193 DSRADVDLNVVMDEHQHLLEIQGTAEGAAFSRSELNGLLDLAEPGLQQLMDSQRQALRNR 252 >gi|33864812|ref|NP_896371.1| ribonuclease PH [Synechococcus sp. WH 8102] gi|61216015|sp|Q7U9I1|RNPH_SYNPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|33632335|emb|CAE06791.1| ribonuclease PH [Synechococcus sp. WH 8102] Length = 249 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 105/239 (43%), Positives = 152/239 (63%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++R S+ +A S +V+ G T +L + +LEE VP W R GW++A Sbjct: 8 RADGRGATELRPFSVDWDPMSFALSSLIVRTGRTAVLCSVSLEEDVPRWRRGNGCGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+V+D+ ALG R ++IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAW+AL + S ++ +AA+S G++ G P++DLDY E Sbjct: 126 DAGTRTASITGAWIALRRACDLLR--SQGVLTQDPIRQQLAAVSVGLIDGTPLLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS DVD N V G ++E+QG+AE+A FS+ AMLNLA+ + +L++ Q+ ++ Sbjct: 184 DSRADVDLNVVTAGDGRLLELQGTAEQAPFSRSELDAMLNLAESGLQELMQGQRHALAT 242 >gi|328955985|ref|YP_004373318.1| RNAse PH [Coriobacterium glomerans PW2] gi|328456309|gb|AEB07503.1| RNAse PH [Coriobacterium glomerans PW2] Length = 246 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 120/238 (50%), Positives = 157/238 (65%), Gaps = 4/238 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +R + L R V K A GSC+V+FGDT +L AT+E+ +P W R ++ GW+TA Sbjct: 8 RADGRGAGDLRRVRLERDVMKNALGSCMVEFGDTRVLCAATIEDGLPGWRRASRSGWVTA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP STG R +RE R GRSQEI+R+IGR+LR+ +L ALG + IDCDVIQA Sbjct: 68 EYAMLPASTGRRTRREFGQRR--GRSQEIERLIGRSLRTATNLRALGEHTVTIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA+TGAWVALHD L + + ++ L VAA+S G++ G ++DLDY E Sbjct: 126 DGGTRTAALTGAWVALHDALAAWVEAARIPRI--PLVSQVAAVSMGLVDGNVLLDLDYAE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 DS +VD N V T S IVE+QG+ ER F + H A+L+L + I LI LQ +V + Sbjct: 184 DSRAEVDMNLVCTQSREIVEIQGTGERTPFDRAHLDALLDLGFEGIERLIALQNEVTA 241 >gi|301168382|emb|CBW27972.1| putative ribonuclease [Bacteriovorax marinus SJ] Length = 234 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 107/231 (46%), Positives = 149/231 (64%), Gaps = 5/231 (2%) Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69 Q R+I T ++ YA GS + +FG+T + TAT+EE VP ++++ GWITAEY MLP S Sbjct: 8 QPRDIKFTAGINPYAAGSVIAEFGNTKVHITATVEESVPRFLKDKGQGWITAEYSMLPSS 67 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 T R +RE + GR+QEIQR+IGR+LR+++DL LG R I IDCDV+ ADGGTRT + Sbjct: 68 THTRNRRE--RSKVSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVLVADGGTRTTS 125 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVD 188 I+GA+VAL ++ + + +K +AA+S G+ G I DL+Y EDST + D Sbjct: 126 ISGAYVALEMAVEKLLESG--LIEETPIKEPLAALSVGINSAGKVIADLNYDEDSTCETD 183 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 N VMT SG +EVQG+AE FS+D A+L A + I + K Q+ V+S Sbjct: 184 MNIVMTKSGKFIEVQGTAEGEAFSRDELNAILECATEAIQSVFKEQEKVLS 234 >gi|312968015|ref|ZP_07782226.1| ribonuclease PH [Escherichia coli 2362-75] gi|312287274|gb|EFR15183.1| ribonuclease PH [Escherichia coli 2362-75] Length = 211 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 110/212 (51%), Positives = 145/212 (68%), Gaps = 2/212 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 LV+FGDT +L TA++EE VP +++ GWITAEYGMLPRST R REA G+QGGR+ Sbjct: 2 LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTM 61 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+I RALR+ VDL ALG I +DCDV+QADGGTRTA+ITGA VAL D L + + Sbjct: 62 EIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALNKLVE-- 119 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 N + +KG VAA+S G++ G + DL+Y EDS + D N VMT+ G I+EVQG+AE Sbjct: 120 NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 179 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 F+ + +L LA+ I ++ QK ++N Sbjct: 180 EPFTHEELLTLLALARGGIESIVATQKAALAN 211 >gi|257875805|ref|ZP_05655458.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20] gi|257809971|gb|EEV38791.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20] Length = 210 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 109/212 (51%), Positives = 149/212 (70%), Gaps = 3/212 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR+E +R + + V K+ EGS ++ FGDT ++ +AT+EE+VP ++R+T GW+T Sbjct: 1 MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATIEERVPPFLRDTGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +RE+ G+ GR+ EIQR+I R+LR+VVDL LG R I++DCDV+Q Sbjct: 61 AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADGGTRTA+ITGA+VAL + + +K +K H+AAIS G+L G + DLDY Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211 EDS+ VD N VMT+SG VE+QG+ E ATF Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATF 210 >gi|332749902|gb|EGJ80314.1| ribonuclease PH [Shigella flexneri K-671] Length = 211 Score = 288 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 112/212 (52%), Positives = 146/212 (68%), Gaps = 2/212 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 LV+FGDT +L TA++EE VP +++ GWITAEYGMLPRST R REA G+QGGR+ Sbjct: 2 LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTM 61 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+I RALR+ VDL ALG I +DCDV+QADGGTRTA+ITGA VAL D LQ + + Sbjct: 62 EIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKLVE-- 119 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 N + +KG VAA+S G++ G I DL+Y EDS + D N VMT+ G I+EVQG+AE Sbjct: 120 NGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 179 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 F+ + +L LA+ I ++ QK ++N Sbjct: 180 EPFTHEELLTLLALARGGIESIVATQKAALAN 211 >gi|304440366|ref|ZP_07400255.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371118|gb|EFM24735.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 435 Score = 288 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 100/240 (41%), Positives = 154/240 (64%), Gaps = 4/240 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R+ N++R++ +T +GSCLV+ G+T ++ TA +E+KVP +++ GW++ Sbjct: 1 MR--DREFNKIRDLKITPNYLSSPDGSCLVEMGNTKIIVTAMIEDKVPFFLKGQGVGWLS 58 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY M+P ST R R+ G+ GRSQEIQR+IGRALRS +DLS +G R I IDCDVI Sbjct: 59 AEYSMIPGSTQRRKPRDISRGKIDGRSQEIQRLIGRALRSAIDLSLIGERTIWIDCDVIS 118 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT ++TG +VAL + K + +K VAAIS G + G +VDLD+ Sbjct: 119 ADGGTRTLSVTGGFVALKLAVNKY--LKEKLIFANPIKRKVAAISLGKVYGRLMVDLDFN 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +DS DVD N VM + +I+E+QG++E++ ++ L+++ I +++K+ +D + + Sbjct: 177 DDSKADVDMNIVMDEDHNIIEIQGTSEKSPLKIKELEELVKLSEETIDEIMKIVEDTVPS 236 >gi|17227565|ref|NP_484113.1| ribonuclease PH [Nostoc sp. PCC 7120] gi|21759403|sp|Q8Z0M2|RNPH_ANASP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|17135047|dbj|BAB77593.1| ribonuclease PH [Nostoc sp. PCC 7120] Length = 247 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 92/225 (40%), Positives = 137/225 (60%), Gaps = 4/225 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++R I+ + +++A GS L G+T +L T ++ E VP ++ + GW+TA Sbjct: 5 RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVAESVPKFLTGSGKGWLTA 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLP +T R +RE + + GR+QEIQR+IGR+LR+ +D ALG R + +D DV+QA Sbjct: 65 EYRMLPSATQQRHERELL--KLSGRTQEIQRLIGRSLRAALDFEALGERTLTVDADVLQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITG +VAL + + + L G +AA+S G+L +DL+Y E Sbjct: 123 DAGTRTAAITGGFVALAEAISQL--LQRGVLERSPLCGQIAAVSVGLLEQEAYLDLNYIE 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 D VD N VM + I+EVQG+AE +FS+ +L+ A+ Sbjct: 181 DVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETG 225 >gi|256372516|ref|YP_003110340.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331] gi|256009100|gb|ACU54667.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331] Length = 238 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 115/231 (49%), Positives = 156/231 (67%), Gaps = 2/231 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++R +++T ++ A GS L++ G T +L T +LEE+VP W+R GW++A Sbjct: 4 RPVGRGAAELRPVAITPDFTEMAPGSVLMRMGRTAVLCTVSLEERVPAWLRGQGRGWVSA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R REAV GRQ GR+ EIQR+IGRALRSVVDL LG Q+++DCDV+QA Sbjct: 64 EYALLPGSTPTRTAREAVRGRQQGRTVEIQRLIGRALRSVVDLERLGEHQLVVDCDVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAAITG ++AL L+ + + L G +AA+S G++ G P++DLDY E Sbjct: 124 DGGTRTAAITGGFLALERALERLAE--GGLVQPAALTGRLAAVSVGVVDGEPLLDLDYDE 181 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 DS DVD N VMTD G VEVQG+AE A F++ +L LA+ I +L++ Sbjct: 182 DSRADVDMNVVMTDGGRYVEVQGAAEGAPFAKATLVELLKLAERGIGELLE 232 >gi|116072072|ref|ZP_01469340.1| Ribonuclease PH [Synechococcus sp. BL107] gi|116065695|gb|EAU71453.1| Ribonuclease PH [Synechococcus sp. BL107] Length = 243 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 104/240 (43%), Positives = 151/240 (62%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N +R S+T +A S V+ G T +L + L++ VP W R GW++A Sbjct: 8 RADGRCRNDLRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+ VD++ LG R ++IDCDVI+A Sbjct: 68 EYRLLPGSTPQRQGRELM--KLSGRTQEIQRLIGRSLRAAVDMAKLGERTLLIDCDVIEA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITGAW+AL + S S L+ VAA+S G++ G ++DLDY E Sbjct: 126 DAGTRTAAITGAWLALQRACSRL--VSQGILESSPLQSQVAAVSVGLVDGQALLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V D G ++EVQG+AE A FS+ +L+LA+ + L++ Q++ ++++ Sbjct: 184 DSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDELLDLAEPGLKQLMQAQREALASD 243 >gi|327542216|gb|EGF28707.1| ribonuclease PH [Rhodopirellula baltica WH47] Length = 246 Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 104/238 (43%), Positives = 143/238 (60%), Gaps = 4/238 (1%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R +Q+R + + + S L K G T +L TA++E VP W+ GW+TAEY M Sbjct: 9 RPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEYNM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R +R+ SG+ GR+ EIQR+IGR+LR+++DL ALG R I +DCDV+QADGGT Sbjct: 69 LPGSTSPRKRRD-RSGKVDGRTTEIQRLIGRSLRAIIDLHALGERSITVDCDVLQADGGT 127 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV---LKGHVAAISCGMLCGYPIVDLDYGED 182 RTA+ITG ++AL + + L+ VAAIS G++ ++DLDY D Sbjct: 128 RTASITGGYIALSLAVSQLASIPELAPPIDPTAVLRDSVAAISVGVIGEDVVLDLDYRLD 187 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 S DVD N +MT SG +E+QG+ E ATF +L L K IA+L KLQK ++ Sbjct: 188 SAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQKAQLAT 245 >gi|293393625|ref|ZP_06637935.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582] gi|291423960|gb|EFE97179.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582] Length = 211 Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 107/212 (50%), Positives = 143/212 (67%), Gaps = 2/212 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 LV+FGDT +L TAT+E+ VP +++ GWITAEYGMLPRST +R REA G+QGGR+ Sbjct: 2 LVEFGDTKVLCTATVEDGVPRFLKGQGQGWITAEYGMLPRSTHSRNAREAAKGKQGGRTL 61 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+I R+LR+ VDL LG I +DCDV+QADGGTRTA+ITGA VAL D L + Sbjct: 62 EIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTASITGACVALADALNALVAAG 121 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 + +KG VAA+S G++ G + DL+Y EDS + D N VM + G ++EVQG+AE Sbjct: 122 KL--KANPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEG 179 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 FS D A+L LA+ I + + QK +++ Sbjct: 180 EPFSHDELLALLALARGGIETIFQAQKAALAD 211 >gi|32473863|ref|NP_866857.1| ribonuclease PH [Rhodopirellula baltica SH 1] gi|61216016|sp|Q7URE2|RNPH_RHOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|32444399|emb|CAD74398.1| ribonuclease PH [Rhodopirellula baltica SH 1] Length = 246 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 105/236 (44%), Positives = 142/236 (60%), Gaps = 4/236 (1%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R +Q+R + + + S L K G T +L TA++E VP W+ GW+TAEY M Sbjct: 9 RPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEYNM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R +R+ SG+ GR+ EIQR+IGR+LR++VDL ALG R I +DCDV+QADGGT Sbjct: 69 LPGSTSPRKRRD-RSGKVDGRTTEIQRLIGRSLRAIVDLHALGERSITVDCDVLQADGGT 127 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV---LKGHVAAISCGMLCGYPIVDLDYGED 182 RTA+ITG ++AL + + L+ VAAIS G++ ++DLDY D Sbjct: 128 RTASITGGYIALSLAVSQLAAIPELDPPVDPTAVLRDSVAAISVGVIGEDVVLDLDYRLD 187 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 S DVD N +MT SG +E+QG+ E ATF +L L K IA+L KLQK + Sbjct: 188 SAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQKAQL 243 >gi|261415038|ref|YP_003248721.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371494|gb|ACX74239.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326761|gb|ADL25962.1| tRNA nucleotidyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 241 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 104/241 (43%), Positives = 152/241 (63%), Gaps = 5/241 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R+ + R + +T A+GS L++ G T ++ ATL KVP W+ GWITA Sbjct: 5 RTD-RKPEEFRNLKMTTGFISSADGSVLIEMGRTRVICNATLLPKVPDWLAGRGTGWITA 63 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP+STG RV+RE GR+QEIQR++GR+LR DL+ALG I++DCDVI+A Sbjct: 64 EYSLLPQSTGKRVERERKGA--SGRTQEIQRLVGRSLRGAADLAALGENAIVVDCDVIEA 121 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+I G +VAL ++ +++ Q Q+LK + AIS G++ G P+ DL Y E Sbjct: 122 DGGTRTASIIGGFVALAIAVKKIKERLGITQ--QILKHGITAISVGVVDGNPLCDLCYVE 179 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N VM D+ + +EVQG+ E A+F + +L+L ++ ++ K Q ++I E Sbjct: 180 DSAADVDMNVVMQDAKNFIEVQGTGEHASFDRAMLNTLLDLGENACKEIYKKQMELIGGE 239 Query: 242 V 242 + Sbjct: 240 L 240 >gi|317968641|ref|ZP_07970031.1| ribonuclease PH [Synechococcus sp. CB0205] Length = 244 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 101/239 (42%), Positives = 145/239 (60%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +R +A S V G+T ++ + LEE VP W + + GW++A Sbjct: 7 RRDGRSATDLRSTRFAWDPMGFALSSVTVYTGNTAVICSVCLEEGVPKWRKGSGKGWLSA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +Y +LP ST +R RE + + GR+QEIQR+I R+LR+ +DL ALG R + IDCDV+QA Sbjct: 67 DYRLLPASTPSRQPRELM--KLSGRTQEIQRLIARSLRACLDLEALGERTLQIDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTA+ITGAW AL LQ +E L G VAA+S G++ G ++DLDY E Sbjct: 125 DAGTRTASITGAWAALAVGLQRLEQ--RGVLERSPLVGQVAAVSVGLVDGAALLDLDYSE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N VM H++E+QG+AE A FS+ ++++LA+ I L++ QK ++ Sbjct: 183 DSRAEVDLNVVMNQEQHLLEIQGTAEGAPFSRQQLSSLVDLAESGIDQLMQAQKQALAE 241 >gi|78185641|ref|YP_378075.1| ribonuclease PH [Synechococcus sp. CC9902] gi|78169935|gb|ABB27032.1| RNAse PH [Synechococcus sp. CC9902] Length = 243 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 106/240 (44%), Positives = 150/240 (62%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N +R S+T +A S V+ G T +L + L++ VP W R GW++A Sbjct: 8 RADGRCRNALRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+ VD++ LG R ++IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQGRELM--KLSGRTQEIQRLIGRSLRAAVDMAQLGERTLLIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITGAW+ALH + S + L+ VAA+S G++ ++DLDY E Sbjct: 126 DAGTRTAAITGAWLALHRACSRL--VSQGILENSPLQSQVAAVSVGLVDSQALLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS +VD N V D G ++EVQG+AE A FS+ A+L+LA+ + L++ Q+ + +E Sbjct: 184 DSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDALLDLAEPGLRQLMEAQRQALVSE 243 >gi|124024144|ref|YP_001018451.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303] gi|123964430|gb|ABM79186.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303] Length = 244 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 104/240 (43%), Positives = 149/240 (62%), Gaps = 4/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + MR + +T +A S +++ G T +L + +EE VP W + GW++A Sbjct: 8 RADGRLADVMRPLQVTWDPMGFALSSLIIRTGRTAVLCSVCVEEGVPRWRQGQGKGWLSA 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP ST R RE + + GR+QEIQR+IGR+LR+V+D++AL + IDCDVIQA Sbjct: 68 EYRLLPGSTPQRQNRELL--KLSGRTQEIQRLIGRSLRAVIDMAALRETTLRIDCDVIQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTRTAAITGAW+AL + + Q + VAA+S G++ YP++DLDY E Sbjct: 126 DAGTRTAAITGAWIALKRGCDRLLE--QGLLTHQPVIDQVAAVSVGLVDSYPLLDLDYSE 183 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS DVD N VM +GH++E+QG+AE A FS++ +LNLA+ + L Q+ + E Sbjct: 184 DSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQTFQRSALMQE 243 >gi|289644629|ref|ZP_06476695.1| ribonuclease PH [Frankia symbiont of Datisca glomerata] gi|289505557|gb|EFD26590.1| ribonuclease PH [Frankia symbiont of Datisca glomerata] Length = 234 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 103/228 (45%), Positives = 141/228 (61%), Gaps = 7/228 (3%) Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 +++TR +AEGS L++FG T +L A++ E VP W + + GW+TAEY MLPR+T R Sbjct: 1 MNITRGWQDHAEGSALIEFGRTRVLCAASVTEGVPRWRKGSGLGWVTAEYSMLPRATNTR 60 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 RE+V GR GGR+ EI R+IGR+LR+ +DL LG I IDCDV+ ADGGTRTA+ITGA Sbjct: 61 NDRESVRGRIGGRTHEISRLIGRSLRTCIDLKILGENTIAIDCDVLVADGGTRTASITGA 120 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 +VAL D + L VAA+S G++ G P++DL Y EDS D D N + Sbjct: 121 YVALSDACGWLGR-------PDALIRSVAAVSVGVVAGRPLLDLAYDEDSGADTDMNVIC 173 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 T G VEVQG+AE F + +L+LA A L ++Q+ ++ Sbjct: 174 TGDGGFVEVQGTAEGLPFDRAMLDQLLDLAVGGCARLTEVQRAALAGP 221 >gi|89052697|ref|YP_508148.1| ribonuclease PH [Jannaschia sp. CCS1] gi|88862246|gb|ABD53123.1| RNAse PH [Jannaschia sp. CCS1] Length = 209 Score = 283 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 109/209 (52%), Positives = 152/209 (72%), Gaps = 2/209 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 +++ GDTH+L TATLE +VP +++N+ GW+TAEYGMLPR+T R++REA +G+Q GR+Q Sbjct: 1 MIRCGDTHVLCTATLEARVPPFLKNSGLGWVTAEYGMLPRATHTRMRREAAAGKQSGRTQ 60 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+IGR+LR+ +D SALG RQI +DCDVIQADGGTR A+ITG WVAL + + Sbjct: 61 EIQRLIGRSLRAGIDRSALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKLLKSG 120 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 + + H+AA+SCG+ G P++DLDY EDS D NF+MT +G +VE+Q SAE Sbjct: 121 EIV--TDPIVDHIAAVSCGIYAGQPVLDLDYPEDSEAGTDGNFIMTGAGQVVELQASAEG 178 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ATFS+D F + +LA+ +A+L++ Q Sbjct: 179 ATFSRDEFNELYSLAEKGVAELVQAQAAA 207 >gi|283780454|ref|YP_003371209.1| ribonuclease PH [Pirellula staleyi DSM 6068] gi|283438907|gb|ADB17349.1| ribonuclease PH [Pirellula staleyi DSM 6068] Length = 247 Score = 283 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 109/239 (45%), Positives = 152/239 (63%), Gaps = 6/239 (2%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R +++R I + R +K + GS L++ G+T +L TA+++ KVP W+ GWITAEY M Sbjct: 3 RTASELRPIKIKRNYTKMSPGSVLIEAGETVVLCTASVDAKVPDWLAGKGKGWITAEYNM 62 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R +RE + GR+ EIQR+IGR+LR+V+DL ALG R + +DCDV+QADGGT Sbjct: 63 LPHSTRPRKQRE--RAKTDGRTTEIQRLIGRSLRAVIDLEALGERLLQVDCDVLQADGGT 120 Query: 126 RTAAITGAWVALHDCLQHMED----CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 RTA+ITGA++A+ D ++ ++ N VL VAAIS G++ G P +DL+Y + Sbjct: 121 RTASITGAFIAVVDAIRSIKGDANNPKNLPITRPVLLDSVAAISVGIVEGKPTLDLEYVQ 180 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D DVD N VMT SG VE+QG+ E ATF A+L LA+ I L +QK + Sbjct: 181 DVDADVDMNVVMTGSGKFVEIQGTGEEATFDDAQLAALLKLARQGITQLTTIQKTALGK 239 >gi|156936190|ref|YP_001440106.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894] gi|156534444|gb|ABU79270.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894] Length = 211 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 107/212 (50%), Positives = 143/212 (67%), Gaps = 2/212 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 LV+FGDT +L TA++EE VP +++ GWITAEYGMLPR+T R REA G+QGGR+ Sbjct: 2 LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTL 61 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+I R+LR+ VDL ALG I +DCDVIQADGGTRTA+ITGA VAL D L + Sbjct: 62 EIQRLIARSLRAAVDLKALGEFTITLDCDVIQADGGTRTASITGACVALADALNALVAAG 121 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 + +KG VAA+S G++ G + DL+Y EDS + D N VMT+ G ++EVQG+AE Sbjct: 122 KL--KTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEG 179 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 F+ + +L LA+ I ++ QK ++N Sbjct: 180 EPFTHEELLDLLALARGGIESIVASQKAALAN 211 >gi|320352955|ref|YP_004194294.1| RNAse PH [Desulfobulbus propionicus DSM 2032] gi|320121457|gb|ADW17003.1| RNAse PH [Desulfobulbus propionicus DSM 2032] Length = 235 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 108/233 (46%), Positives = 147/233 (63%), Gaps = 3/233 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR R + +R S+ V +A+GS L++ G+TH+L T+E++VP ++++ GWIT Sbjct: 1 MRSGERSADALRPFSVEYGVQPHADGSVLIRMGNTHVLCGVTVEDRVPPFLKDKGQGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGMLP +T +R +REAVSG GR+ EIQR+IGR+LR +VDLS LG + +DCDV+ Sbjct: 61 AEYGMLPCATHSRGRREAVSG-LSGRTHEIQRLIGRSLRMMVDLSLLGEHTLRVDCDVLN 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR A+ITG +A+ L M + L VAAIS G++ G P++DLDY Sbjct: 120 ADGGTRCASITGGALAVKMALARMVERGRLPALPP--LLPVAAISAGVVAGQPVLDLDYA 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 EDS+ +VDANFVM+ G +EVQ +AE F F AM LA L L Sbjct: 178 EDSSAEVDANFVMSGDGRWIEVQSTAEGGPFHPQLFTAMAELAARGTGQLFGL 230 >gi|149173903|ref|ZP_01852532.1| ribonuclease PH [Planctomyces maris DSM 8797] gi|148847433|gb|EDL61767.1| ribonuclease PH [Planctomyces maris DSM 8797] Length = 246 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 112/242 (46%), Positives = 149/242 (61%), Gaps = 12/242 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGW 58 MR RQ Q+R I + R +K GS L+ GDT +L TA+L+ VP W +N + GW Sbjct: 1 MRHDSRQPEQLRPIKVERGYTKATPGSILISAGDTVVLCTASLDNSVPPWKKNDENPSGW 60 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +TAEY MLP ST R +R R GRS EIQR+IGR+LR+V+D ALG R I +DCDV Sbjct: 61 VTAEYNMLPGSTSPRKQR-----RADGRSSEIQRLIGRSLRAVIDFGALGPRTITVDCDV 115 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDC-----SNKFQLSQVLKGHVAAISCGMLCGYP 173 +QADGGTRT +ITG ++AL D + + + F ++ VAA+S G++ G P Sbjct: 116 LQADGGTRTLSITGGFLALLDTVLAIPETCELAPGEVFDPKRIFSDSVAAVSVGVVNGEP 175 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++DLDY EDST VD N VMT G +EVQG+AE TF++ A L LA I L ++ Sbjct: 176 VLDLDYVEDSTAGVDMNVVMTGGGDFIEVQGTAEGQTFNRGMLDAQLELATAGIQQLSEI 235 Query: 234 QK 235 Q+ Sbjct: 236 QR 237 >gi|149912896|ref|ZP_01901430.1| ribonuclease PH [Roseobacter sp. AzwK-3b] gi|149813302|gb|EDM73128.1| ribonuclease PH [Roseobacter sp. AzwK-3b] Length = 210 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 111/211 (52%), Positives = 154/211 (72%), Gaps = 2/211 (0%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 +++ GDTH+L TA+LEE+VP +++ T GW+TAEYGMLPRST +R++REA +G+QGGR+ Sbjct: 1 MIRVGDTHVLCTASLEERVPPFMKGTGLGWVTAEYGMLPRSTSSRMRREATAGKQGGRTV 60 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 EIQR+IGR+LR+ VD ALG RQI +DCDVIQADGGTR AAITG W+AL + + Sbjct: 61 EIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGGTRCAAITGGWIALRLAVNKLMKAG 120 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 + S L VAA+SCG+ G P++DLDY EDS VD NF+MT S ++EVQ SAE Sbjct: 121 DVI--SDPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGNFIMTGSKRLIEVQMSAEG 178 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +T+S+D +++LA+ +A+L+ QK ++ Sbjct: 179 STYSRDQMNLLMDLAEKGVAELVAAQKAAVN 209 >gi|254434220|ref|ZP_05047728.1| ribonuclease PH [Nitrosococcus oceani AFC27] gi|207090553|gb|EDZ67824.1| ribonuclease PH [Nitrosococcus oceani AFC27] Length = 210 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 107/210 (50%), Positives = 147/210 (70%), Gaps = 2/210 (0%) Query: 31 KFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI 90 +FG+T ++ A++E+++P +++ T GWITAEYGMLPRST NR+ REA GRQGGR+ EI Sbjct: 2 EFGNTRVICNASVEDRIPRFLKGTGRGWITAEYGMLPRSTHNRMGREAAQGRQGGRTLEI 61 Query: 91 QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK 150 QR IGRALR+VVDL+ALG + +DCDVIQADGGTRTAAITG++VAL D + + Sbjct: 62 QRFIGRALRAVVDLAALGEVTVTLDCDVIQADGGTRTAAITGSYVALVDAIN--NRLKKR 119 Query: 151 FQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210 + G +A+IS G+ G P++DLDY EDST + D N VM ++G +E+QG+AE Sbjct: 120 IITHSPIHGQLASISVGIYEGTPVLDLDYREDSTAETDMNVVMNEAGAFIEIQGTAEGHA 179 Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 F + AML+LAK I L+ Q +V++ Sbjct: 180 FRMNELQAMLDLAKSGINTLLAQQTEVLAK 209 >gi|269216890|ref|ZP_06160744.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122] gi|269129697|gb|EEZ60781.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122] Length = 246 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 154/239 (64%), Gaps = 5/239 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R + MR+++L R V K A GSCLVKFGDTH+L +AT+E++V W + + GW+TA Sbjct: 11 RVDNRLDRAMRDVTLERGVMKNASGSCLVKFGDTHVLVSATIEDRVAGWRKGSGLGWLTA 70 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG-SRQIIIDCDVIQ 120 EY MLP + R RE + GRSQEI+R+IGR+LR+V D+ +G + IDCDV+Q Sbjct: 71 EYAMLPAAGTKRTPRETKGRK--GRSQEIERLIGRSLRNVCDMGRMGGEVTMTIDCDVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+ITGAWVA D + + L G VAA+S GM+ G ++DLDY Sbjct: 129 ADGGTRTASITGAWVAAWDAFEMWRMAGR--CKTNPLFGQVAAVSVGMVGGRLLLDLDYR 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 EDS ++D N VM G +VEVQG+ E+ +FS+ ML++A+ I L++ Q+ + Sbjct: 187 EDSQAEIDMNVVMNGKGELVEVQGTGEQVSFSRATLNEMLDMAQAGIDGLLEKQRAAVG 245 >gi|318042724|ref|ZP_07974680.1| ribonuclease PH [Synechococcus sp. CB0101] Length = 244 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 139/239 (58%), Gaps = 4/239 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + +R +A S V G T ++ + LEE VP W + + GW++A Sbjct: 7 RSDGRSPSDLRPTRFDWDPMGFALSSVTVHTGRTAVICSVCLEEDVPKWRQGSGKGWLSA 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +Y +LP ST +R RE + + GR+QEIQR+I R+LR+ +DL ALG R + IDCDV+QA Sbjct: 67 DYRLLPASTPSRQPRELM--KLSGRTQEIQRLIARSLRACLDLEALGERSLHIDCDVLQA 124 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 D GTR+A+ITGAW AL L+ +E + + VAA+S G++ ++DLDY E Sbjct: 125 DAGTRSASITGAWAALALGLRRLE--ARGVLNGTPMLEQVAAVSVGLVGSQALLDLDYSE 182 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 DS +VD N VM G ++EVQG+AE A FS+ +L+LA + + L Q + Sbjct: 183 DSRAEVDLNVVMNSQGQLLEVQGTAEGAPFSRQQLNQLLDLADEGLQLLRHSQLQALEQ 241 >gi|189184292|ref|YP_001938077.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda] gi|189181063|dbj|BAG40843.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda] Length = 251 Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 114/244 (46%), Positives = 158/244 (64%), Gaps = 7/244 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59 MRL R++++MR IS+ ++GSCL+K G+TH++ +AT+EE +P++++N K G W+ Sbjct: 1 MRLCSRKDSEMRPISIELGTMLNSKGSCLIKIGNTHVICSATVEESLPLFLKNKKQGGWV 60 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP S+ RVKRE + G+ GR+QEIQR+I RA+R+ VDL LG RQI+IDCDVI Sbjct: 61 TAEYSMLPGSSLQRVKREGIQGK-SGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVI 119 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTR A+ITG +VA+ + + N + VAAISCG+ G IVDLDY Sbjct: 120 NADGGTRAASITGGYVAMCLAVNKLMQEKNLAVY--PILYQVAAISCGISNGRVIVDLDY 177 Query: 180 GEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS +VDANFV +G IVE+Q +AE+ F + ML LA+ I + +Q Sbjct: 178 QEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQNQ 237 Query: 237 VISN 240 + Sbjct: 238 SLLK 241 >gi|223940166|ref|ZP_03632028.1| ribonuclease PH [bacterium Ellin514] gi|223891183|gb|EEF57682.1| ribonuclease PH [bacterium Ellin514] Length = 255 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 99/217 (45%), Positives = 137/217 (63%), Gaps = 4/217 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58 +R GR Q+R + ++ YA GS LV++G+T ++ T+EE VP W++ GW Sbjct: 17 LRTDGRLPGQLRPLRFQNHIAPYATGSTLVEWGNTRVICGVTVEESVPRWMKEQNVIGGW 76 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 ITAEY MLP ST R +R+ G+ GRSQEIQR+IGRA+R+ +DL +GSR I +DCDV Sbjct: 77 ITAEYSMLPYSTLQRKQRDISKGKIDGRSQEIQRLIGRAMRAAIDLEKIGSRTIWVDCDV 136 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTRTAAITGA+VAL ++ + + VAA+S G++ P++DL Sbjct: 137 LQADGGTRTAAITGAYVALSLAVRKLMSEGKL--KESPMLHAVAAVSVGVVNRQPLLDLC 194 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215 Y ED+ VD N VM G +E+QG+ E ATFS+ Sbjct: 195 YVEDAAAAVDLNLVMNSVGEFIELQGTGEEATFSETE 231 >gi|148284140|ref|YP_001248230.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong] gi|146739579|emb|CAM79326.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong] Length = 251 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 114/244 (46%), Positives = 157/244 (64%), Gaps = 7/244 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59 MRL R++++MR IS+ ++GSCL K G+TH++ +AT+EE +P++++N K G W+ Sbjct: 1 MRLCSRKDSEMRPISIELGAMLNSKGSCLTKIGNTHVICSATVEESLPLFLKNKKQGGWV 60 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 TAEY MLP S+ RVKRE + G+ GR+QEIQR+I RA+R+ VDL LG RQI+IDCDVI Sbjct: 61 TAEYSMLPGSSLQRVKREGIQGK-SGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVI 119 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGGTR A+ITG +VA+ + + N + VAAISCG+ G IVDLDY Sbjct: 120 NADGGTRAASITGGYVAMCLAVNKLMQEKNLAVY--PILYQVAAISCGISNGRVIVDLDY 177 Query: 180 GEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 EDS +VDANFV +G IVE+Q +AE+ F + ML LA+ I + +Q Sbjct: 178 QEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQNQ 237 Query: 237 VISN 240 + Sbjct: 238 SLLK 241 >gi|162456258|ref|YP_001618625.1| ribonuclease PH [Sorangium cellulosum 'So ce 56'] gi|161166840|emb|CAN98145.1| ribonuclease PH [Sorangium cellulosum 'So ce 56'] Length = 257 Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats. Identities = 104/240 (43%), Positives = 137/240 (57%), Gaps = 3/240 (1%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R + + + AEGS L + G T +L TA++E VP W+ GW+TA Sbjct: 3 RPDGRALDVHRPVEMILGFHRNAEGSVLYRAGRTVVLCTASVEPTVPAWMMGKGAGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 EY M PRS+ R + G+ GR+QEIQR+IGRALR+ +DL LG + I IDCDV++ Sbjct: 63 EYQMHPRSSPARREPRDGRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDCDVLE 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+IT +VAL L M + + VL+ VAAIS G L G +DL Y Sbjct: 123 ADGGTRTASITAGFVALALALDRMRAAGSL--EAPVLRDQVAAISVGHLPGGLALDLVYT 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 EDS+ VD N V T G IVEVQ +AE + M +LA +A L Q +S+ Sbjct: 181 EDSSARVDMNVVATAVGSIVEVQATAEDEAIPRAELDRMTDLALAGVASLASAQHRALSS 240 >gi|302338872|ref|YP_003804078.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293] gi|301636057|gb|ADK81484.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293] Length = 236 Score = 274 bits (702), Expect = 7e-72, Method: Composition-based stats. Identities = 97/230 (42%), Positives = 146/230 (63%), Gaps = 4/230 (1%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR++ + GSCL +GDT ++ T +LE++VP ++ GW+TAEYGMLP ST Sbjct: 1 MRDVQFQTSYLIHPAGSCLASYGDTKVICTVSLEDRVPSFLEGRGCGWLTAEYGMLPGST 60 Query: 71 GN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G R +RE G++ GRS EIQR+IGR+LR+ VD+ LG R + +DCDVIQADGGTRTA+ Sbjct: 61 GGGRKQREI--GKRDGRSTEIQRLIGRSLRASVDMEKLGERTLTVDCDVIQADGGTRTAS 118 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 ++G WVAL++ L + + + LKG +AA+S G++ G + DLDY DS +VD Sbjct: 119 VSGGWVALYEALSALAEREGRGGADYYLKGQLAAVSVGIVDGQVVCDLDYAHDSRAEVDM 178 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 N V + VE+QG+ E+ TFS + +++ A + + + + Q+D + Sbjct: 179 NIVKLEEA-FVELQGTGEKGTFSSEQLASLIAAADEGLTFIFQKQRDALK 227 >gi|307719046|ref|YP_003874578.1| ribonuclease PH [Spirochaeta thermophila DSM 6192] gi|306532771|gb|ADN02305.1| ribonuclease PH [Spirochaeta thermophila DSM 6192] Length = 226 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 102/229 (44%), Positives = 136/229 (59%), Gaps = 5/229 (2%) Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 MR +S V Y GSCLV FG+T +L A++EE VP +I GW+TAEY MLP S Sbjct: 1 MRPVSFEAGVLAYPAGSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASV 60 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 KR + R+ EIQR IGR+LR+ VD + LG I++DCDV+QADGGTRTAAI Sbjct: 61 PEGRKR----RERDSRAVEIQRFIGRSLRAAVDRTRLGPYTIVMDCDVLQADGGTRTAAI 116 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 +G WVAL+ L + + L G VAA+S GM+ G + DLD+ D VD N Sbjct: 117 SGGWVALYQALGKLAEMQGVEGPDYFLVGQVAAVSVGMVEGRLVADLDFAHDLAAQVDMN 176 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 VM D +VEVQG+ E+ +F++D AML+LA I + + Q+ + Sbjct: 177 VVMCDD-RLVEVQGNGEKGSFTRDELDAMLDLAAREIRIIYEAQRAALG 224 >gi|221632459|ref|YP_002521680.1| ribonuclease PH [Thermomicrobium roseum DSM 5159] gi|221156234|gb|ACM05361.1| ribonuclease PH [Thermomicrobium roseum DSM 5159] Length = 243 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 111/235 (47%), Positives = 153/235 (65%), Gaps = 4/235 (1%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR +++R + + YAEGS L+ G+TH+L AT+EE+VP ++ + GWITAEYG Sbjct: 11 GRANDELRPVEIVPHYIPYAEGSALIMLGNTHVLCAATVEERVPSFLVGSGQGWITAEYG 70 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPRS R+ RE + GGR+ EIQR+IGR+LR+ VDL+ALG R IIIDCDV++ADGG Sbjct: 71 MLPRSGRERIPRERMG--PGGRTAEIQRLIGRSLRAAVDLAALGERTIIIDCDVLRADGG 128 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTAAITG WV L + S + VAA+S G++ G P +DL+Y EDS Sbjct: 129 TRTAAITGGWV--ALHLALQHLLAEGRIESLPVVRQVAAVSVGVVAGQPRLDLEYAEDSC 186 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +VD N VMTD G VE+QG+AE F ++ +L LA+ I++L+ +Q+ + Sbjct: 187 AEVDMNIVMTDRGEFVELQGTAEGQPFGREVLEQLLRLAERGISELMLVQRRALG 241 >gi|126730097|ref|ZP_01745909.1| ribonuclease PH [Sagittula stellata E-37] gi|126709477|gb|EBA08531.1| ribonuclease PH [Sagittula stellata E-37] Length = 206 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 103/208 (49%), Positives = 145/208 (69%), Gaps = 2/208 (0%) Query: 32 FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91 GDTH+L TA+LEE+VP +++ + GW+TAEYGMLPRST +R++REA G+QGGR+ EIQ Sbjct: 1 MGDTHVLCTASLEERVPPFVKGSGQGWVTAEYGMLPRSTSSRMRREAAMGKQGGRTVEIQ 60 Query: 92 RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151 R+IGRALR+ VD +ALG RQI +DCDVIQADGGTR A+ITG WVAL + + + Sbjct: 61 RLIGRALRAGVDRNALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKLMKAGDIV 120 Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211 + L VAA+SCG+ G ++DLDY EDS VD NF++ ++EVQ SAE + F Sbjct: 121 --TDPLISEVAAVSCGIYAGQAVLDLDYPEDSEAGVDGNFILRGDNALIEVQMSAEGSVF 178 Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVIS 239 S++ +++LA+ + +L+ Q+ + Sbjct: 179 SRNQMTQLMDLAEKGVVELVAAQRAAVK 206 >gi|289672870|ref|ZP_06493760.1| ribonuclease PH [Pseudomonas syringae pv. syringae FF5] Length = 186 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 98/184 (53%), Positives = 130/184 (70%), Gaps = 1/184 (0%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + +DCDVIQA Sbjct: 63 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTA+ITGA VAL D L + + LK +AA+S GM G P++DLDY E Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181 Query: 182 DSTI 185 DS Sbjct: 182 DSAA 185 >gi|315186954|gb|EFU20712.1| RNAse PH [Spirochaeta thermophila DSM 6578] Length = 223 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 98/226 (43%), Positives = 134/226 (59%), Gaps = 5/226 (2%) Query: 14 ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73 +S V Y GSCLV FG+T +L A++EE VP +I GW+TAEY MLP S Sbjct: 1 MSFEVGVLAYPAGSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASVPEG 60 Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 KR + R+ EIQR IGR+LR+ +D + LG I+IDCDV+QADGGTRTAAI+G Sbjct: 61 RKR----RERDSRAVEIQRFIGRSLRAALDRTRLGPYTIVIDCDVLQADGGTRTAAISGG 116 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 WVAL+ L+ + + L G VAA+S G++ G + DLD+ D VD N VM Sbjct: 117 WVALYQALEKLAELHGVEGPEYFLAGQVAAVSVGIVEGQLVADLDFAHDLAAQVDMNVVM 176 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D +VEVQG+ E+ F+++ AML+LA I + + Q+ + Sbjct: 177 CDD-RLVEVQGNGEKGAFTREELDAMLDLAAQEIGLIYEAQRAALG 221 >gi|87125085|ref|ZP_01080932.1| ribonuclease PH [Synechococcus sp. RS9917] gi|86167405|gb|EAQ68665.1| ribonuclease PH [Synechococcus sp. RS9917] Length = 220 Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats. Identities = 96/221 (43%), Positives = 139/221 (62%), Gaps = 4/221 (1%) Query: 21 SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 +A S LV+ G T +L + E VP W + GW++AEY +LP ST R KRE + Sbjct: 1 MGFALSSVLVRSGRTAVLCSIGHEAGVPRWRMGSGKGWLSAEYRLLPGSTPERQKRELL- 59 Query: 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140 + GR+QEIQR+IGR+LR+ +D+ ALG +++DCDVIQAD GTRTAAITGAWVAL Sbjct: 60 -KLSGRTQEIQRLIGRSLRACLDMEALGENTLLVDCDVIQADAGTRTAAITGAWVALQRA 118 Query: 141 LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200 + + + ++ VAA+S G++ G ++DL+Y EDS DVD N VM SG ++ Sbjct: 119 CERLVKRGDL--SHNPVRDQVAAVSVGLIGGEALLDLNYSEDSQADVDLNVVMDGSGRLL 176 Query: 201 EVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 E+QG+AE A FS+ +L+LA+ + L+ Q+ ++ E Sbjct: 177 ELQGTAEGAPFSRSELTRLLDLAEPGLTALMAAQQRALAPE 217 >gi|149924421|ref|ZP_01912786.1| ribonuclease PH [Plesiocystis pacifica SIR-1] gi|149814728|gb|EDM74302.1| ribonuclease PH [Plesiocystis pacifica SIR-1] Length = 248 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 103/254 (40%), Positives = 147/254 (57%), Gaps = 23/254 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR +Q+R ++LT + A+GS L+ G T +L TA++E + P W+ + GW+T Sbjct: 1 MRFDGRSNDQLRPLTLTPGFTSAADGSVLIATGGTRVLCTASVESRTPSWL--SSGGWVT 58 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSRQIIIDC 116 AEY MLP +T R R + GR++EIQR+IGR+LR+ VDLS L G I+ DC Sbjct: 59 AEYAMLPGATRPRGGR-----KANGRAKEIQRLIGRSLRAAVDLSKLVGPDGGVSIVCDC 113 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-----CG 171 DVI+ADGGTRTAAITGAWVAL L+ + + VAA+S G++ Sbjct: 114 DVIEADGGTRTAAITGAWVALELALRRL--VAGGKLSEHPGIAPVAAVSVGVIPVEGSEP 171 Query: 172 YPIVDLDYGEDSTIDVDANFVM-----TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ++DL Y EDS VD N VM + +VE+QG+ E+ FS++ ML+LA+ Sbjct: 172 EVMLDLPYSEDSRAIVDLNVVMRRAPEGGTPRLVEIQGTGEQGDFSREQLNRMLDLAEGG 231 Query: 227 IADLIKLQKDVISN 240 I +L+ Q+ + Sbjct: 232 ITNLLAGQQAALRE 245 >gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT] gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta thermophila PT] Length = 245 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 22/239 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +++R I + V K A+GSC ++ GD ++ +V P ++ I Sbjct: 11 IRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRAII 70 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M S R + RS E+ ++ AL V+ S I I +V+ Sbjct: 71 RYRYNMASFSVEERRR-----PGPDRRSYELSKVSREALEPVILTSYFPKSVIDIFVEVL 125 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTRTA I A VAL D M V++ + G + G ++D Sbjct: 126 QADAGTRTAGINAASVALADAGIPMRSL-------------VSSCAAGKVDGQIVLDPMK 172 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ D +T +G I +Q ++D F + LAK ++ K+Q+ V+ Sbjct: 173 DEDNFGQADMPIAITPTGEITLLQMDG---ILTRDEFRQAMELAKKGCQEIYKIQRRVL 228 >gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola SANAE] gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola SANAE] Length = 254 Score = 255 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 102/241 (42%), Gaps = 22/241 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 RL GR N++R I V K A+GSC ++FG ++ +V P ++N + Sbjct: 13 RLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAIVR 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M S R KR RS EI ++ AL SVV + I +++Q Sbjct: 73 YRYNMAAFSVEER-KRPG----PDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A I A VAL D M + V+A S G + G ++DL+ Sbjct: 128 ADAGTRVAGINAASVALADAGIPM-------------RCLVSACSVGKIDGEVVLDLNKD 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED+ D + G + Q +++ F L++A D L ++QK + Sbjct: 175 EDNYGQADLPVAVNQFGEVTLCQMDGH---LTEEEFGKALDMAVDGCKKLHEMQKQALVE 231 Query: 241 E 241 + Sbjct: 232 K 232 >gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus mahii DSM 5219] gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus mahii DSM 5219] Length = 297 Score = 254 bits (650), Expect = 7e-66, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR+ +++R + + V A+GSC +++G+ +L + P ++ + Sbjct: 14 LRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPNEVLV 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M S +R++ RS EI ++ G A VV I + +V+ Sbjct: 74 RYKYNMASFSVEDRIR-----PGPSRRSTEISKVSGEAFEPVVMTQYYPGAVIDVFAEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTRTAAI A +AL D M KG V+A + G + G ++DL+ Sbjct: 129 QADAGTRTAAINAATLALADAGIPM-------------KGLVSACAVGKVDGQLVLDLNK 175 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ D MT G I +Q + + L + K +I++Q++ + Sbjct: 176 PEDNYGQADLPVAMTQDGEITLLQMDGH---LTPEELEEGLEMVKKGCQQIIEIQREAL 231 >gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM 12710] gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM 12710] Length = 240 Score = 254 bits (650), Expect = 7e-66, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 21/242 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ +++R I + V K A+GS V++G T ++ +V P + I Sbjct: 12 LRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRALI 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST +R S R E+ ++I AL S+V I + +V+ Sbjct: 72 RCRYHMAPFSTSDRK-----SPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVL 126 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRT +T A +AL D M D VA ++ G + G ++D+D Sbjct: 127 QADGGTRTTGLTAASLALADAGIPMRDL-------------VAGVAAGKVDGVLVLDIDE 173 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D + I E+ F+ + F LNLAK + K+ K+ + Sbjct: 174 VEDEYGEADMPI--GYAAGIDEIVLLQLNGVFTVEEFKEALNLAKRGAEQIYKIMKETLH 231 Query: 240 NE 241 + Sbjct: 232 KK 233 >gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP] gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP] Length = 246 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A+GS +++G +L ++ P ++ + Sbjct: 16 RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDRAILR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L I + +V+Q Sbjct: 76 VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M+D V+A + G + G ++DL+ Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDL-------------VSACAAGKIEGQIVLDLNKE 177 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D +M I +Q +++ F + LA + + Q++ + Sbjct: 178 EDNYGEADVPVAIMPIKNDITLLQMDG---YLTREEFLEAVRLAIKGAKAVYQKQREALK 234 Query: 240 NE 241 + Sbjct: 235 EK 236 >gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1] gi|73919276|sp|Q5JIR6|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1 gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus kodakarensis KOD1] Length = 249 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A+GS V++G +L ++ P ++ + Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L I + +++Q Sbjct: 77 VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M+D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMKDL-------------VAACAAGKIDGEIVLDLNKE 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D +M I +Q ++D F + LA + + Q++ + Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKDEFLEAVRLAIKGAKAVYQKQREALK 235 Query: 240 NE 241 + Sbjct: 236 EK 237 >gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [uncultured methanogenic archaeon RC-I] gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [uncultured methanogenic archaeon RC-I] Length = 253 Score = 251 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 97/241 (40%), Gaps = 22/241 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 RL GR +R I V K A+GSC ++FG ++ +V P ++ + + Sbjct: 13 RLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASNAIVR 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M S R KR RS EI ++ AL SV+ I I +++Q Sbjct: 73 YRYNMASFSVEER-KRPG----PDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A I A VAL D M K V+A + G ++DL+ Sbjct: 128 ADAGTRVAGINAASVALADAGIPM-------------KCLVSACAVGKADDTLVLDLNKD 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED+ D M G I Q + D F LN+A + L +LQK + Sbjct: 175 EDNYGQADLPIAMNQFGEITLCQMDGH---MTSDEFSTALNMAIEGCKKLHELQKQALVE 231 Query: 241 E 241 + Sbjct: 232 K 232 >gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus marinus F1] gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus marinus F1] Length = 240 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 104/242 (42%), Gaps = 21/242 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ N++R I + V K A+GS V++G T ++ +V P + I Sbjct: 12 LRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRALI 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST +R S R E+ ++I AL S+V I + +V+ Sbjct: 72 RCRYHMAPFSTSDRK-----SPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVL 126 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRT +T A +AL D M D VA ++ G + G ++D+D Sbjct: 127 QADGGTRTTGLTAASLALADAGIPMRDL-------------VAGVAVGKVDGVLVLDIDE 173 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D + I E+ + + F LNLAK + K K+ + Sbjct: 174 VEDEYGEADMPI--GYAAGIDEIVLLQLNGVLTVEEFREALNLAKWGAEQIYKTMKETLH 231 Query: 240 NE 241 + Sbjct: 232 KK 233 >gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638] gi|29336822|sp|Q8U0L9|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1 gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638] Length = 250 Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 RL GR++ ++R I + V K A GS +++G ++ ++ P ++ + Sbjct: 17 RLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L I + +V+Q Sbjct: 77 VRYNMAPFSVEERKK-----PGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA S G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACSAGKIEGEIVLDLNKE 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D +M I +Q +++ F + LA + + Q++ + Sbjct: 179 EDNYGEADVPVAIMPIKNDITLLQMDG---YLTKEEFIEAVKLAIKGAKAVYQKQREALK 235 Query: 240 NE 241 + Sbjct: 236 EK 237 >gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1] gi|226740341|sp|B6YSI2|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1 gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1] Length = 249 Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A+GS V++G +L ++ P ++ + Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L I I +V+Q Sbjct: 77 VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D +M I +Q ++D F + LA + + Q++ + Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTRDEFIEAVRLAIKGAKAVYQKQREALK 235 Query: 240 NE 241 + Sbjct: 236 EK 237 >gi|297622726|ref|YP_003704160.1| ribonuclease PH [Truepera radiovictrix DSM 17093] gi|297163906|gb|ADI13617.1| ribonuclease PH [Truepera radiovictrix DSM 17093] Length = 236 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 99/237 (41%), Positives = 138/237 (58%), Gaps = 7/237 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGW 58 MR GRQ Q+REI +T +++AEGS LV++GDT +L T T+E K+P +R K GW Sbjct: 1 MRK-GRQPFQLREIRVTPGYNRFAEGSALVEWGDTRVLATVTVENKLPPHLRGKKGRVGW 59 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +TAEY MLPRST R +RE + GGRS EIQR+IGR+LRSV DL+ + + +D DV Sbjct: 60 LTAEYAMLPRSTAERTQRERLYA--GGRSLEIQRLIGRSLRSVTDLTLFHGQTLTVDVDV 117 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR A I + ALH + L VAA+S G++ G ++DLD Sbjct: 118 LQADGGTRCAGILAGYAALHHAAGRLVR--KGALDEWPLTHEVAAVSVGVVRGETLLDLD 175 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 + ED+ ++D N V T G +VEVQGS E + ++ + L+ + Sbjct: 176 FHEDAAAEIDLNVVATADGKLVEVQGSGEERPIDAGRYVELVAQGISAVQGLLAHVR 232 >gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM 739] gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM 739] Length = 246 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R+I + V K A+GS V++G ++ ++ P ++ + Sbjct: 16 RVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKPDRAILR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL V L I I +V+Q Sbjct: 76 VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M+D VAA + G + G ++DL+ Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDL-------------VAACAAGKIDGEIVLDLNKE 177 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D +M I +Q +++ F + LA + + Q++ + Sbjct: 178 EDNYGEADVPVAIMPIKNDITLLQMDG---YLTKEEFLEAVKLAIKGAKAVYQKQREALR 234 Query: 240 NE 241 + Sbjct: 235 EK 236 >gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5] gi|29337010|sp|Q9V119|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1 gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Adp In Double Conformation gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With A Single Stranded 10-Mer Poly(A) Rna gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Cdp gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi GE5] Length = 249 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A GS +++G ++ + P ++ + Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L I + +V+Q Sbjct: 77 VRYNMAPFSVEERKK-----PGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D +M I +Q ++D F + LA + + Q++ + Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKDEFIEAVKLAIKGAKAVYQKQREALK 235 Query: 240 NE 241 + Sbjct: 236 EK 237 >gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2] gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2] Length = 249 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A+GS +++G ++ ++ P ++ + Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L I + +V+Q Sbjct: 77 VRYNMAPFSVEERKK-----PGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D +M I +Q +++ F + LA + + Q++ + Sbjct: 179 EDNYGEADVPVAIMPLRNDITLLQMDG---YLTKEEFIEAVKLAIKGAKAVYQKQREALK 235 Query: 240 NE 241 ++ Sbjct: 236 DK 237 >gi|291295492|ref|YP_003506890.1| ribonuclease PH [Meiothermus ruber DSM 1279] gi|290470451|gb|ADD27870.1| ribonuclease PH [Meiothermus ruber DSM 1279] Length = 238 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 131/242 (54%), Gaps = 7/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++R ++L YAEGS LV+ G T +L +L + VP + + GW+ A Sbjct: 3 RKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDGVPRHVSGRE-GWLMA 61 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LPRST R +RE + GR+ EIQR +GRA R+ +DLS L ++ ++ID DVIQA Sbjct: 62 EYNLLPRSTKERKERE--RQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADVIQA 119 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180 DGGTR A++ G + ALH + + + +L + AA+S G + ++DL Sbjct: 120 DGGTRVASLLGGYAALHMAMDRLVNQG---KLDEWPLTEFAAVSVGWMSDDSLLLDLTQI 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED D V T SG I+E+ G+ E + + AML + I +L++ + N Sbjct: 177 EDENAWADLTVVATQSGDIIELHGAGEGRPVPRSTYQAMLEMGLAHIPELVRRVHAQLKN 236 Query: 241 EV 242 V Sbjct: 237 RV 238 >gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1] gi|29336795|sp|Q8PTT8|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1 gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1] Length = 493 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 22/242 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR+ +++R + + V A+GSC +++G +L + P + I Sbjct: 16 LRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVI 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M S +R RS EI ++ A V+ I I +V+ Sbjct: 76 RYRYNMASFSVEDR-----ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTRTAAI + +AL D M KG + + + G + G ++DL+ Sbjct: 131 QADAGTRTAAINASSIALADAGIPM-------------KGLITSCAFGKVDGKIVLDLNK 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D MT G I +Q + D L L K +++++Q+ V+ Sbjct: 178 EEDNYGEADFPVAMTQDGEITLIQMDG---NLTPDEIKQGLELVKKGCKEILEIQQAVLR 234 Query: 240 NE 241 + Sbjct: 235 KK 236 >gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456] gi|254782534|sp|A2BKC0|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1 gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456] Length = 255 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 107/243 (44%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R GR Q+R I + V A+GS LV++G T ++ + P + I Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST R + R E+ ++I AL +VV I + +V+ Sbjct: 84 RCRYHMAPFSTAERK-----TPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVL 138 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q+DGGTRTAAIT A +AL D M D VA ++ G + G ++D+D Sbjct: 139 QSDGGTRTAAITAASLALADAGIAMRDL-------------VAGVAVGKVDGVLVLDIDE 185 Query: 180 GEDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D M S ++ +Q + + D F L LA+ I + LQK+ + Sbjct: 186 IEDNYAEADMPVAMAPSLDKVLLLQLNG---VLTHDEFVKALELARKGIQVIYNLQKEAL 242 Query: 239 SNE 241 + Sbjct: 243 RKK 245 >gi|169829487|ref|YP_001699645.1| ribonuclease PH [Lysinibacillus sphaericus C3-41] gi|168993975|gb|ACA41515.1| Ribonuclease PH [Lysinibacillus sphaericus C3-41] Length = 196 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 88/190 (46%), Positives = 120/190 (63%), Gaps = 3/190 (1%) Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 WITAEY MLPR+T R RE+ G+ GR+ EIQR+IGRALR+VVDL ALG R + Sbjct: 2 GKGKDWITAEYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTV 61 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 IDCDVIQADGGTRTA+ITGA+VA+ + + + + +AA S G++ Sbjct: 62 WIDCDVIQADGGTRTASITGAFVAMTQAIAKFAEEKPFVKF--PVTDFLAATSVGIVEEQ 119 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 ++DL+Y ED VD N VMT +G VE+QG+ E ATFS++ +L L + I L+ Sbjct: 120 GAVLDLNYVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQLV 179 Query: 232 KLQKDVISNE 241 +LQK ++ + Sbjct: 180 ELQKTALAEQ 189 >gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19] gi|29336819|sp|Q8TYC1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1 gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19] Length = 239 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 98/243 (40%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR+ ++MR + + V K A+GS ++ G ++ + P + + Sbjct: 14 LRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVV 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R KR RS EI ++ AL + I I +V+ Sbjct: 74 RFRYNMAPFSVDER-KRPG----PDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A I+ A VAL D M D VAA + G + G ++D Y Sbjct: 129 QADAGTRCAGISAASVALADAGIEMRDL-------------VAACAAGKVEGKVVLDPMY 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D +M G I +Q + + F + LAK + K Q+ + Sbjct: 176 YEDGYGEADVPLAMMPKEGKITLLQMDGD---MTPGEFKQAVKLAKKGCKIVYKEQRRAL 232 Query: 239 SNE 241 + Sbjct: 233 KEK 235 >gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG6J21] Length = 245 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ N+ R++++ V K A+GS ++FG +L V P + N G + Sbjct: 16 IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R + R EI +++ AL V L I + +V+ Sbjct: 76 RVRYHMAPFSVSERK-----NPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR AA+ A VAL D M D V + + G + I+D++ Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCSCAAGKVADALILDVNN 177 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D M + G I +Q + D F + L + + ++QK+ + Sbjct: 178 EEDQAGQADMPIGYMPNFGKITLLQLDG---VLTTDEFKKCIELGIEGCKQVYEIQKNAL 234 Query: 239 SNE 241 + Sbjct: 235 REK 237 >gi|330952125|gb|EGH52385.1| ribonuclease PH [Pseudomonas syringae Cit 7] Length = 186 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 95/187 (50%), Positives = 127/187 (67%), Gaps = 1/187 (0%) Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 G +TAEYGMLPR+TG R +REA G+QGGR+ EIQR+IGR+LR+ +D+S LG + Sbjct: 1 RGRGGLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLY 60 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 +DCDVIQADGGTRTA+ITGA VAL D L + + LK +AA+S GM G P Sbjct: 61 VDCDVIQADGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP 119 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++DLDY EDS + D N VMT +G +EVQG+AE A F + AML LA+ + +L +L Sbjct: 120 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEL 179 Query: 234 QKDVISN 240 Q+ +++ Sbjct: 180 QRAALAD 186 >gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7] gi|29336896|sp|Q975G8|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1 gi|15621438|dbj|BAB65433.1| 247aa long hypothetical ribonuclease PH [Sulfolobus tokodaii str. 7] Length = 247 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 21/242 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59 +RL GR+ ++MR I + V K A+GS + + G+T ++ E P + + Sbjct: 19 LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVL 78 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST R + R E+ ++I AL S + + I + +V+ Sbjct: 79 RVRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVL 133 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 134 QADAGTRLVSLMAASMALADAGIPMRDL-------------IAGVAVGKADGVLVLDLNE 180 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D M S +V + F L +A+ I + L+K+ I Sbjct: 181 PEDMWGEADMPVAMMPSLK--QVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKEAIR 238 Query: 240 NE 241 ++ Sbjct: 239 SK 240 >gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG5E24] Length = 245 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 100/243 (41%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ N+ R++++ V K A+GS ++FG +L V P + N G + Sbjct: 16 IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R + R EI +++ AL V L I + +V+ Sbjct: 76 RVRYHMEPFSVSERK-----NPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR AA+ A VAL D M D V + + G I+D++ Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCSCAAGKAADTLILDVNN 177 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D M + G I +Q + D F + L + + ++QK+ + Sbjct: 178 EEDQAGQADMPIGYMPNFGKITLLQLDG---VLTTDEFKKCIELGIEGCKQVYEIQKNAL 234 Query: 239 SNE 241 + Sbjct: 235 REK 237 >gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi] gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi] Length = 248 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 102/243 (41%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59 +R+ GR+ +++R I + A+GS + G+T +L +V + I Sbjct: 13 LRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAII 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG R KR+ ++ RS EI +I + SV+ QI I V+ Sbjct: 73 NCEYSMATFSTGER-KRQF---KKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR A I A +AL D M K V + + G + G P+ DL+Y Sbjct: 129 QADGGTRCACINAATLALLDAGIPM-------------KDFVVSCAAGFIQGSPLTDLNY 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D + + +Q ++ S D F +L A + + K+ + + Sbjct: 176 IEDCAGGPDVPIALLPKHDKVTLLQMDSK---LSLDQFEKVLEHAIEGCKQIHKVIDEQL 232 Query: 239 SNE 241 Sbjct: 233 KKH 235 >gi|297565611|ref|YP_003684583.1| ribonuclease PH [Meiothermus silvanus DSM 9946] gi|296850060|gb|ADH63075.1| ribonuclease PH [Meiothermus silvanus DSM 9946] Length = 235 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 90/239 (37%), Positives = 127/239 (53%), Gaps = 7/239 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +MR +S+ + YAEGS LV+ G T +L T +L + VP +R + GW+ Sbjct: 3 RKDGRAPLEMRPLSIHTGYNLYAEGSALVELGHTKVLVTVSLTDGVPRHVR-PREGWLMT 61 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LPRST R +RE + GR+ EIQR +GRA R+V+DLS+L + ++ID DV+QA Sbjct: 62 EYNLLPRSTKERKERE--RQKLSGRTAEIQRFMGRAFRAVLDLSSLPGKTVVIDADVLQA 119 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYG 180 DGGTR A++ G + ALH L M L + AAIS G ++DL + Sbjct: 120 DGGTRVASLIGGYAALHQALDKMVRSG---ALDEWPLQEFAAISLGWFGEERILLDLTHV 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D V T G ++EV G E Q + ML I +L++ +S Sbjct: 177 EDENAWADLTVVATQGGEVIEVHGGGEGRAVPQPVYKQMLETGLGFIPELVRRIHQALS 235 >gi|320104936|ref|YP_004180527.1| RNAse PH [Isosphaera pallida ATCC 43644] gi|319752218|gb|ADV63978.1| RNAse PH [Isosphaera pallida ATCC 43644] Length = 240 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 105/239 (43%), Positives = 141/239 (58%), Gaps = 8/239 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR ++R + R + + GS LV+ G T +L TA L ++VP ++ GW+T Sbjct: 2 MRHDGRTPQEIRPVRFERGFAAASAGSVLVRSGSTVILVTANLVDQVPPFLEGRGTGWLT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLP ST +R R + GR EIQR+IGR+LR++VDL LG R + +D DVIQ Sbjct: 62 AEYAMLPGSTPSRKPR-----KVDGRCTEIQRLIGRSLRAMVDLERLGPRTLHLDADVIQ 116 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAAIT A VA D L C + +LKG +AA+S G++ G ++DLDY Sbjct: 117 ADGGTRTAAITAACVATADALNK---CLGAEEARAILKGRLAAVSVGVVDGVGLLDLDYS 173 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED +VD N V +VEVQG+AE A F + +L+LA I L+ LQ D + Sbjct: 174 EDVRAEVDLNVVRLGPRGLVEVQGTAEGAPFDRRRLEELLDLADQGIDRLMALQLDAVG 232 >gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348] gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula DSM 5348] Length = 245 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 RL GR+ +++R + + V K A+GS LV+ G+T ++ + P + + Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R S R E+ ++I AL S + + I + +VIQ Sbjct: 76 VRYHMTPFSTDERK-----SPVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEVIQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A++ A +A+ D +K +AA++ G G ++DL+ Sbjct: 131 ADAGTRLASLMAASLAVVDAGI-------------PVKDVIAAVAVGKADGVVVLDLNEP 177 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D M G I +Q + +Q F L LA I+ + L+K+V+ Sbjct: 178 EDMWGEADMPVAMLPSLGQITLIQLNG---NMTQQEFKQGLELAYKGISTIYNLEKEVLR 234 Query: 240 NE 241 N+ Sbjct: 235 NK 236 >gi|254172979|ref|ZP_04879653.1| exosome complex exonuclease 1 [Thermococcus sp. AM4] gi|214033135|gb|EEB73963.1| exosome complex exonuclease 1 [Thermococcus sp. AM4] Length = 248 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R+I + V K A+GS +++G +L ++ P ++ + Sbjct: 16 RIDGRKKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L + + +V+Q Sbjct: 76 VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 131 ADAGTRVAGITAASLALADAGVPMRDL-------------VAACAAGKIDGEIVLDLNKD 177 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D +M I +Q +++ F + LA + + Q++ + Sbjct: 178 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKEEFIEAVKLAIKGAKAVYQKQREALK 234 Query: 240 NE 241 + Sbjct: 235 EK 236 >gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3] gi|259645401|sp|C5A2B9|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1 gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like protein (Rrp41p) [Thermococcus gammatolerans EJ3] Length = 249 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR++ ++R+I + V K A+GS +++G +L ++ P ++ + Sbjct: 17 RIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L + + +V+Q Sbjct: 77 VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGVPMRDL-------------VAACAAGKIDGEIVLDLNKD 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D +M I +Q +++ F + LA + + Q++ + Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKEEFIEAVKLAIKGAKAVYQKQREALK 235 Query: 240 NE 241 + Sbjct: 236 EK 237 >gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28] gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28] Length = 246 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 101/242 (41%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWIT 60 R GR N+ R + + V AEGS LV +G+T +L +VP + + Sbjct: 15 RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M+P ST K R EI ++I AL VV L I + +V+Q Sbjct: 75 VRYHMIPFSTSEGRKSPT----PSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG TR IT A +AL D M D + +S G + G IVDL+ Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDL-------------LVGVSVGKVSGTIIVDLNQL 177 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D +M G I +Q E ++ + LA + +LQKDV+ Sbjct: 178 EDQYGEGDMPLAIMYGRGLITLMQADGE---WTPTEVNQAVELAFKAAEQIYRLQKDVLK 234 Query: 240 NE 241 N+ Sbjct: 235 NK 236 >gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1] gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1] Length = 243 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR+ +++R + + V K A+GS +V+ G+T +L + P + + Sbjct: 15 LRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVL 74 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST R + R E+ ++I AL S + + I + +V+ Sbjct: 75 RVRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A++ A +A+ D ++ +AA++ G G ++DL+ Sbjct: 130 QADAGTRLASLMAASLAVVDAGI-------------PVRDLIAAVAVGKADGVVVLDLNE 176 Query: 180 GEDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D M S G I +Q + + + F + LA I + L+K+ + Sbjct: 177 PEDMWGEADMPVAMMPSIGQINLLQLNG---NMTPEEFRQGMELAMKGINIIYNLEKETL 233 Query: 239 SNE 241 N+ Sbjct: 234 KNK 236 >gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3] gi|29336584|sp|O59223|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1 gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 249 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 R+ GR++ ++R I + V K A GS +++G ++ + ++ + Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++I AL + L I + +V+Q Sbjct: 77 VRYNMAPFSVEERKK-----PGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A IT A +AL D M D VAA + G + G ++DL+ Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D +M I +Q +++ F + LA + + Q++ + Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKEEFIEAVRLAIKGAKAVYQKQREALK 235 Query: 240 NE 241 + Sbjct: 236 EK 237 >gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro] gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri str. Fusaro] Length = 501 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 22/242 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR +++R + + V A+GSC +++G +L + P + I Sbjct: 14 LRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTAVI 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M ST +R RS EI ++ A V+ I I +++ Sbjct: 74 RYKYNMASFSTEDR-----ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTRTAAI + +AL D M KG V + + G + G ++DL+ Sbjct: 129 QADAGTRTAAINASSIALADAGIPM-------------KGLVTSCAFGKVDGQIVLDLNK 175 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D MT G I +Q + D L K +++++Q+ V+ Sbjct: 176 EEDNYGEADFPVAMTQDGEITLLQMDG---NLTTDEIRKGFELVKKGCKEILEIQQAVLR 232 Query: 240 NE 241 + Sbjct: 233 TK 234 >gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4] gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4] Length = 245 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 RL GR+ +++R + + V K A+GS LV+ G+T ++ + P + + Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R S R E+ ++I AL S V + I + +VIQ Sbjct: 76 VRYHMTPFSTDERK-----SPVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEVIQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A++ A +A+ D ++ +AA++ G G ++DL+ Sbjct: 131 ADAGTRLASLMAASLAIIDAGI-------------PVRDAIAAVAVGKADGVVVLDLNEP 177 Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D M S G I +Q + + + F L+LA I + ++K+V+ Sbjct: 178 EDMWGEADMPVAMMPSLGQITLIQLNGH---MTPEEFKQGLDLAYKGINTIYSMEKEVLK 234 Query: 240 NE 241 ++ Sbjct: 235 SK 236 >gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304] gi|29336576|sp|O29757|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1 gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304] Length = 258 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 20/240 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +++R I + V K A+GSC ++ G ++ +V P +++ I Sbjct: 16 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAII 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R + RS EI ++ A +V+ I I +V+ Sbjct: 76 RYRYNMAPFSVEERKR-----PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD G+RTA + A VAL D M KG + +++ G G ++D Sbjct: 131 QADAGSRTACLNAASVALVDAGVPM-------------KGMITSVAVGKADGQLVLDPMK 177 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D F + +G I + ++D + LAK + ++Q++ I Sbjct: 178 EEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAI 237 >gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM 6242] gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides burtonii DSM 6242] Length = 343 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 22/242 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR+ +++R +++ V A+GSC +++G+ +L + P ++ + Sbjct: 14 LRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPSEALV 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M S +R++ RS EI ++ G A +VV I + +V+ Sbjct: 74 RYRYNMAAFSVEDRIR-----PGPSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTRTAAI A +AL D M KG VAA + G + G ++DL+ Sbjct: 129 QADAGTRTAAINAATLALVDAGIPM-------------KGLVAACAVGKVDGQLVIDLNK 175 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ D D MT+ G I +Q + D + + + + +QK+ + Sbjct: 176 PEDNYGDADLPIAMTEDGEITLLQMDG---NLTADEIAKGVEMVRKGCEQIFAIQKEALL 232 Query: 240 NE 241 ++ Sbjct: 233 SK 234 >gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM 639] gi|76364178|sp|Q4JB27|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1 gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639] Length = 243 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59 +R GR+ +++R I + V K A+GS + + G+T ++ E P + + Sbjct: 15 LRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASL 74 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST R + R E+ ++I AL S + L+ I I +V+ Sbjct: 75 RVRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A+ A +AL D M D +A ++ G G ++DL+ Sbjct: 130 QADAGTRLVALMAASMALADAGIPMRDL-------------IAGVAVGKADGSLVLDLNE 176 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D V+ G +V +Q + + D F LA+ I+ + LQK+ + Sbjct: 177 QEDMWGEADMPIAVLPSLGQVVLLQLNG---FMTPDEFRRAFELAQKGISSIYALQKEAL 233 Query: 239 SNE 241 N+ Sbjct: 234 KNK 236 >gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429] gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429] Length = 246 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 100/242 (41%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWIT 60 R GR N+ R + + V K AEGS LV +G+T +L +VP + + Sbjct: 15 RSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST K R EI ++I AL VV L I + +V+Q Sbjct: 75 VRYHMAPFSTSEGRKSPT----PSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG TR IT A +AL D M D + +S G + G +VDL+ Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDL-------------LVGVSIGKVSGTIVVDLNQL 177 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D +M G I +Q E ++ L+LA + +L+K+ + Sbjct: 178 EDQYGEGDMPLAIMYGRGLITLMQADGE---WTPTEVNQALDLAFKAAEQIYRLEKETLK 234 Query: 240 NE 241 + Sbjct: 235 SR 236 >gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG8G2] Length = 245 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ N+ R++++ V K A+GS ++FG +L V P + N G + Sbjct: 16 IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R + R EI +++ AL V L I + +V+ Sbjct: 76 RVRYHMEPFSVSERK-----NPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG+R AA+ A VAL D M D V + + G I+D++ Sbjct: 131 QADGGSRCAALDAASVALADAGIPMRD-------------MVCSCAAGKAADALILDVNN 177 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D M + G I +Q + D F + L + + ++QK+ + Sbjct: 178 EEDQAGQADMPIGYMPNLGKITLLQLDG---VLTTDEFKKCIELGLEGCKQVYEIQKNAL 234 Query: 239 SNE 241 + Sbjct: 235 REK 237 >gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303] gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303] Length = 333 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 22/242 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R+ GR+ +++R + + V A+GSC +++G+ +++ + P ++ I Sbjct: 14 LRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAVYGPRELHPRRMQRPDAAVI 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M S +R + RS EI ++ A VV + I + +V+ Sbjct: 74 RYKYNMASFSVEDRQR-----PGPSRRSSEISKVSSEAFEPVVMTQFYPNTVIDVFSEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +AD GTRTAAI A +AL D LK V+A + G + G ++DL+ Sbjct: 129 EADAGTRTAAINAATLALIDAGI-------------PLKSLVSACAVGKVDGQLVLDLNK 175 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D +T G I +Q ++D + L K+ + ++Q++ + Sbjct: 176 KEDNEGEADLPVAITQDGEITLLQMDGH---LTEDEIKQAMELVKNGCQQIQQIQREALL 232 Query: 240 NE 241 + Sbjct: 233 KK 234 >gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631] gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631] Length = 244 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 20/242 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 RL GR ++R I + V A+GSC ++ G ++ +V P + + I Sbjct: 12 RLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSKAIIR 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R KR RS EI ++ AL V+ I I +V+Q Sbjct: 72 YRYSMAPFSVEER-KRPG----PDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQ 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+RTA + A VAL D M KG V +++ + G ++D Sbjct: 127 ADAGSRTACLNAASVALIDAGIPM-------------KGMVTSVAVAKVDGILVLDPMKE 173 Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D F + +G I + S++ L +AK + +LQ++ I Sbjct: 174 EDNYGEADIPFAFLIRNGKIESITLLQMDGRVSKEELKKALEMAKKGAMQIYQLQREAIL 233 Query: 240 NE 241 + Sbjct: 234 KK 235 >gi|218884635|ref|YP_002429017.1| Probable exosome complex exonuclease 1 [Desulfurococcus kamchatkensis 1221n] gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus kamchatkensis 1221n] Length = 242 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 23/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R+ GR+ ++R + + V K A GS LV++G+T L + +P I + Sbjct: 12 LRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAIL 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST R S R E+ ++I AL SVV S I + +++ Sbjct: 72 RVRYHMAPFSTTERK-----SPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEIL 126 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRT +T A +AL D M D V ++ G + G ++D++ Sbjct: 127 QADGGTRTTGLTAASLALADAGIPMRDL-------------VIGVAVGKVDGVLVLDINE 173 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D +M ++G IV +Q + + F L++A + + K K+ + Sbjct: 174 LEDEYGEADLPVGIMPNTGEIVLLQLNG---VLTSGEFKQALDMAYKGVEQIYKTAKEAM 230 >gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG8O8] Length = 245 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ N+ R++++ V K A+GS ++FG +L V P + N G + Sbjct: 16 IRCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R + R EI +++ AL V L I + +V+ Sbjct: 76 RVRYHMEPFSVDERK-----NPAPSRREIEISKVVKEALEPAVILEKFPRTVIDVFLEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR AA+ A VAL D M D V A + G + I+D++ Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCACAAGKVADTLIIDVNN 177 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D M + G + +Q + + F + L + + ++QK + Sbjct: 178 EEDQAGQADMPVGYMPNLGKVTLLQLDG---VLTPEEFKKCVELGIEGSKQVYEIQKQAL 234 Query: 239 SNE 241 + Sbjct: 235 REK 237 >gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site Length = 258 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 20/240 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +++R I + V K A+GSC ++ G ++ +V P +++ I Sbjct: 16 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAII 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R + RS EI ++ A +V+ I I +V+ Sbjct: 76 RYRYNMAPFSVEERKR-----PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD G+RTA + A VAL D M KG + +++ G G ++D Sbjct: 131 QADAGSRTACLNAASVALVDAGVPM-------------KGMITSVAVGKADGQLVLDPMK 177 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D F + +G I + ++D + LAK + ++Q++ I Sbjct: 178 EEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAI 237 >gi|126640155|ref|YP_001083139.1| ribonuclease PH [Acinetobacter baumannii ATCC 17978] Length = 174 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 92/175 (52%), Positives = 117/175 (66%), Gaps = 2/175 (1%) Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPRST +R REA G+Q GR+QEIQR+IGR+LR++VDL LG I IDCDVIQADGG Sbjct: 1 MLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG 60 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTA+ITGA VAL D + + + K LKG VAAIS GM ++DL Y EDS Sbjct: 61 TRTASITGAAVALVDAMNVL--LAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYEEDSN 118 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D N VMT +G +E+QG+AE F++ AML +A+ IA+LIK Q++ + Sbjct: 119 CQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEALG 173 >gi|328949911|ref|YP_004367246.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884] gi|328450235|gb|AEB11136.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884] Length = 240 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 122/242 (50%), Gaps = 6/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +MR + +T + +AEGS LV+ G T +L T ++ + VP + + GW+ Sbjct: 3 RKDGRGPLEMRPLVITPNYNAFAEGSALVELGQTRVLATVSITDGVPRHVHPRRSGWLMC 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LPR+T R +RE + GGR+QE+QR +GRA R+ +DL AL + +I+D DV+QA Sbjct: 63 EYSLLPRATPTRTQRE--RFKLGGRTQEVQRFLGRAFRAALDLKALAGKTVIVDADVLQA 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180 DGGTR A+I G + AL L M L A+S G ++DL Sbjct: 121 DGGTRVASILGGYAALFLALDRMVRDGT---LDDWPLLEFGAVSLGWFGEDRVLLDLTAI 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED D V T G ++E+ G E + + M+ + I L+ +S Sbjct: 178 EDENAWADLTVVATRDGELIEIHGGGEGRPVPRAVYERMVAAGLEVIPSLVAAVHRAVSK 237 Query: 241 EV 242 + Sbjct: 238 PL 239 >gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642] gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642] Length = 245 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 20/242 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R+ GR +++R I + V K A+GSC ++ G ++ KV P + + + Sbjct: 13 RIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQAIVR 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R + RS EI ++ AL S++ I I +V+Q Sbjct: 73 YRYNMAPFSVEERKR-----PGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+RTA + A VAL D M KG + +++ + G ++D Sbjct: 128 ADAGSRTACLNAASVALVDAGIPM-------------KGIITSVAVAKVDGVLVLDPMKE 174 Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D F +G I + +++ + LAK ++ KLQ++ I Sbjct: 175 EDNYGEADIPFAFFIRNGKIESIALLQMDGRVTKEELMQAVELAKKGAMEIYKLQREAIM 234 Query: 240 NE 241 + Sbjct: 235 RK 236 >gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6] gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6] Length = 246 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 20/242 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 RL GR +++R I + V + A+GSC ++ G ++ +V P +++ I Sbjct: 14 RLDGRDFDELRPIKIEAGVLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSRAIIR 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S R K RS EI ++ AL V+ I I +V+Q Sbjct: 74 YRYNMAPFSVEERKK-----PGPDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTRTA + A VAL D M +G + A++ + G ++D Sbjct: 129 ADAGTRTACLNAASVALIDAGVAM-------------RGMITAVAVAKVEGEIVLDPMKE 175 Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D F + +G I + S + L LAK + +Q++ I Sbjct: 176 EDNYGEADVPFAFLIRNGKIESIALLQMDGKMSAEEMKKALELAKKGAMQIYNIQREAIM 235 Query: 240 NE 241 + Sbjct: 236 RK 237 >gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5] Length = 247 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 23/239 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 R GR +++R I + V K A+GSC ++ G+ ++ + P ++ K I Sbjct: 13 RSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVIK 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST +R KR RS EI ++ A V+ I + +++Q Sbjct: 73 FRYNMAPFSTDDR-KRPG----PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A +AL D M+D V++I+ G + G ++DL+ Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKINGEVVLDLNAA 174 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D M + I +Q +Q+ F L LA + +LQ+ + Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---MTQEEFGRGLKLAMGACHQIYELQRAAL 230 >gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A] Length = 245 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R+ GR+ +++R I + V K A+GS + + G+T + E P + + Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R + R E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D M S + +V + + F +LA I + L+++ + + Sbjct: 178 EDMWGEADMPVAMMPS--LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKS 235 Query: 241 E 241 + Sbjct: 236 K 236 >gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10] Length = 242 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 RLSGR ++R I + V K A+GSC + G+ ++ + P +N K + Sbjct: 14 RLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGVYGPREMHPRHFQNAKMAVVK 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S +R KR RSQEI + +AL V+ I + +V+Q Sbjct: 74 YRYNMAPFSVDDR-KRPG----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A VAL D M D V++++ G + G ++DLD Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D M + I +Q ++ F L LA D + +LQK + Sbjct: 176 EDNFGEADMPIAMIARTNTITLLQMDGR---LKKEEFERGLKLAMDGSRKIYELQKAALV 232 Query: 240 NE 241 + Sbjct: 233 EK 234 >gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1] Length = 245 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 23/239 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 RL GR +++R I + V K A+GSC ++ G+ ++ + P ++ K + Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVVK 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST +R KR RS EI ++ A V+ I + +++Q Sbjct: 73 FRYNMAPFSTDDR-KRPG----PDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A +AL D M+D V++I+ G + G ++DL+ Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKIGGEMVLDLNAA 174 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D M + I +Q +Q+ F L LA + +LQ+ + Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---MTQEEFGRGLKLAMGACHQIYELQRAAL 230 >gi|320335008|ref|YP_004171719.1| ribonuclease PH [Deinococcus maricopensis DSM 21211] gi|319756297|gb|ADV68054.1| ribonuclease PH [Deinococcus maricopensis DSM 21211] Length = 236 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 88/234 (37%), Positives = 126/234 (53%), Gaps = 4/234 (1%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + R + +TR V+ +AEGS L+ G T +L T T++ KVP +R K GW+ AEY M Sbjct: 5 RPTTEPRPLHVTRGVNMHAEGSALLHLGRTQVLATVTVDPKVPPHMRGKKTGWLMAEYSM 64 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +PR+T +R R+ GR EIQR++GRA R+ VDL R +++DCDV+QADGGT Sbjct: 65 MPRATQDRTPRDRNLS--NGRRHEIQRLLGRAFRATVDLRHFRDRTLVVDCDVLQADGGT 122 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 R A++ + AL D + L V A S G++ G VDLDY ED Sbjct: 123 RVASVLAGYAALWDYADRLIRTGKL--SEWPLLHEVGACSVGLVGGEVRVDLDYLEDVQA 180 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + D N V T SG ++E QG AE A + + +L D L+ + ++ Sbjct: 181 EADLNVVATSSGLLIEAQGGAEGAPIAPGVYEQLLRAGLDGTRTLLARVHEDLA 234 >gi|226357252|ref|YP_002786992.1| tRNA nucleotidyltransferase [Deinococcus deserti VCD115] gi|226319242|gb|ACO47238.1| putative tRNA nucleotidyltransferase (Phosphate-dependent exonuclease) (Ribonuclease PH) (RNase PH) [Deinococcus deserti VCD115] Length = 249 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 93/228 (40%), Positives = 125/228 (54%), Gaps = 4/228 (1%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR + R +S+ R V+ +A GS + G T +L T TLE+K +R K GW+TAEY Sbjct: 14 GRGLLEPRPVSVKRGVNPHAPGSAHLIMGRTEILATVTLEDKPAPHMRGKKEGWLTAEYS 73 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T +R RE Q GR EIQR++GRALR+ VDL ++ I +DCDV+ ADGG Sbjct: 74 MLPRATNDRQARE--RNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIYVDCDVLVADGG 131 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TR A+I ALHD + + L V AIS G++ VDLDY ED Sbjct: 132 TRVASILAGHAALHDFCDRLINSGQL--SEWPLTHKVGAISVGLVGEEVRVDLDYAEDKV 189 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D N V TD+G ++EVQG AE S + +L+ I ++ Sbjct: 190 ARADLNVVATDTGLVIEVQGGAEEGPISLAEYSQLLHTGVQAIHGVMD 237 >gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus fervidus DSM 2088] gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus fervidus DSM 2088] Length = 236 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 100/244 (40%), Gaps = 23/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59 +R GR N++R + + V K A+GS ++ G +L I+ I Sbjct: 11 VRKDGRAYNELRPVKIKAGVLKRADGSSYIELGSNKILAAVYGPRDPQITKIKRPDRAII 70 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R KR RS EI ++ AL + L I I +V+ Sbjct: 71 RCRYNMAPFSVEER-KRPG----PDRRSIEISKITAEALAPSIILEKFPRSSIDIFIEVL 125 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +ADGGTR A IT A VAL D + D V A S G + G+ ++DL Sbjct: 126 EADGGTRCAGITAASVALADAGIPLRDL-------------VVACSAGKVNGHVVLDLTE 172 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D +M + I +Q E + + ++LA + + KLQK I Sbjct: 173 EEDKEGEADVPVAIMPRTKEITLLQVDGE---LTPEELEKAIDLAIEGCMSINKLQKKSI 229 Query: 239 SNEV 242 ++ Sbjct: 230 ERKI 233 >gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25] gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4] gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25] gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4] Length = 245 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R+ GR+ +++R I + V K A+GS + + G+T + E P + + Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R + R E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D M S + +V + + F +LA I + L+++ + + Sbjct: 178 EDMWGEADMPVAMMPS--LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKS 235 Query: 241 E 241 + Sbjct: 236 K 236 >gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera aggregans DSM 11486] gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera aggregans DSM 11486] Length = 249 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 23/239 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 RL GR+ +++R + + V K A GS LV++G T +L + +P I + Sbjct: 20 RLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRATLR 79 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R S R E+ ++I AL SVV I I +V+Q Sbjct: 80 VRYHMAPFSTSERK-----SPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQ 134 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA +T A VAL D M+D V ++ G + G ++D+ Sbjct: 135 ADGGTRTAGLTAASVALADAGIPMKDL-------------VIGVAVGKIEGNLVLDISEL 181 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D + + G IV +Q + + + A + LA + + K+ K+ + Sbjct: 182 EDEYGEADLPLGIAPNIGEIVLLQLNG---VLTPEELKAGIELAWKGVDSIYKIAKEAL 237 >gi|313680799|ref|YP_004058538.1| RNAse PH [Oceanithermus profundus DSM 14977] gi|313153514|gb|ADR37365.1| RNAse PH [Oceanithermus profundus DSM 14977] Length = 240 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 89/242 (36%), Positives = 125/242 (51%), Gaps = 6/242 (2%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R + +T R YAEGS LV+ G T +L +L VP ++ + GW+ A Sbjct: 3 RPDGRSPTGRRPLKITPRYLDYAEGSALVELGRTRVLVAVSLTPGVPRHMQGKRSGWLMA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LPRST +R +RE + GGR+QE+QR +GRA R+ VDL L ++ I++D DVIQA Sbjct: 63 EYNLLPRSTESRTQRE--RFKLGGRTQEVQRFLGRAFRAAVDLDLLPNQTIVVDADVIQA 120 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYG 180 DGGTR AAI G + AL + L AAIS G G +VDLD Sbjct: 121 DGGTRVAAILGGYAALVQAFDALVRAGR---LDDWPLTEFAAISLGWAGGDEVLVDLDAR 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D V T G ++E+ G E + + M++ +I L+ ++ Sbjct: 178 EDDRVHADLTVVGTAEGELIEIHGGGEGRPVPRAIYDRMVDEGLRQIPGLVAEVHKQLAE 237 Query: 241 EV 242 V Sbjct: 238 GV 239 >gi|237739458|ref|ZP_04569939.1| ribonuclease PH [Fusobacterium sp. 2_1_31] gi|229423066|gb|EEO38113.1| ribonuclease PH [Fusobacterium sp. 2_1_31] Length = 171 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 86/172 (50%), Positives = 117/172 (68%), Gaps = 2/172 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T GW+T Sbjct: 2 LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEY MLPR+T R +REA G+ GR+ EIQR+IGRALRS +DL LG R I IDCDVIQ Sbjct: 62 AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 121 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 ADGGTRT +ITG +VAL ++ + + L +VAAIS G + Sbjct: 122 ADGGTRTTSITGGYVALALAIKKL--LKEEILEENPLIANVAAISVGKIDSE 171 >gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20] gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20] Length = 245 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 R GR +QMRE+ ++ V A+GS +V +G+T + + P + + Sbjct: 14 RADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDRAVMR 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST + K A R EI +++ AL + L +I + +++Q Sbjct: 74 VRYHMAPFSTRDERKNPA----PSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIVQ 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG TR A++T A +AL D M D V +S G++ G ++DL+ Sbjct: 130 ADGSTRVASLTAASLALADAGVPMRDL-------------VIGVSVGLVNGTVVLDLNGL 176 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D M + G I +Q ++S+D F L LA + ++ + Sbjct: 177 EDNYGEGDMPVGYMPNLGRITLLQLDG---SWSRDKFAEALKLAIKGAEYVYSKAREALK 233 Query: 240 NE 241 + Sbjct: 234 TK 235 >gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27] gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27] Length = 245 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R+ GR+ +++R I + V K A+GS + + G+T + E P + + Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R + R E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEA 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D M S + +V + + F +LA I + L+++ + + Sbjct: 178 EDMWGEADMPVAMMPS--LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKS 235 Query: 241 E 241 + Sbjct: 236 K 236 >gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6] Length = 242 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 RLSGR ++R I + V K A+GSC + G+ + + P +N K + Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAVYGPREMHPRHFQNAKMAVVK 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S +R KR RSQEI + +AL V+ I + +V+Q Sbjct: 74 YRYNMAPFSVDDR-KRPG----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A VAL D M+D V++++ G + G ++DLD Sbjct: 129 SDAGTRTAGINAASVALADAGIPMKDL-------------VSSVAIGKIDGEVVLDLDAK 175 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D M + I +Q ++ F L LA + +LQK + Sbjct: 176 EDNFGEADMPIAMVARTNTITLLQMDGR---LKKEEFERGLQLAMTGCRKIYELQKAALV 232 Query: 240 NE 241 + Sbjct: 233 EK 234 >gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans DSM 17230] gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans DSM 17230] Length = 242 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 102/242 (42%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R GR+ +R I + V K A+GS +V+ G T +L +V P I Sbjct: 14 RHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAVIR 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y ML ST K A R E+ ++I AL + S I I +VI Sbjct: 74 CRYRMLSFSTLGERKSPA----PSRREIELSKVIREALEPAIISSMYPRTAIDIFVEVIN 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 A+GGTRTA IT A +AL D + D VAA++ G + G ++DLD Sbjct: 130 ANGGTRTAGITAASLALADAGIPLADL-------------VAAVAVGKIDGVIVLDLDEL 176 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D M I +Q + +++ F A L L I + +LQK+ + Sbjct: 177 EDMYGEADMPIAAMPSLNRITMLQLNG---VLTKEEFKAALKLGLQGIKQIYELQKETLR 233 Query: 240 NE 241 + Sbjct: 234 RK 235 >gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2] gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2] Length = 245 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R GR+ +++R I + V K A+GS + + G+T + E P + + Sbjct: 16 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R + R E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G I+DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 177 Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D M S + Q + + + D F +LA I + L+++ + Sbjct: 178 EDMWGEADMPIAMMPSLNQVTLFQLNG---SMTPDEFRQAFDLAVKGINIIYNLEREALK 234 Query: 240 NE 241 ++ Sbjct: 235 SK 236 >gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9] Length = 242 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 RLSGR ++R I + + K A+GSC + G+ L + P +N K + Sbjct: 14 RLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAVYGPREMHPRHFQNAKRAVVK 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S +R KR RSQEI + +AL V+ I + +V+Q Sbjct: 74 YRYNMAPFSVDDR-KRPG----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A VAL D M D V++++ G + G ++DLD Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D M + I +Q ++ F L LA + + +LQK + Sbjct: 176 EDNFGEADVPIAMIARTNTITLLQMDGR---LKKEEFERGLKLAMNGCRKIYELQKAALV 232 Query: 240 NE 241 + Sbjct: 233 EK 234 >gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4] Length = 245 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 21/241 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R+ GR+ ++R I + V K A+GS + + G+T + E P + + Sbjct: 16 RIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R + R E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D M S + +V + + F +LA I + L+++ + + Sbjct: 178 EDMWGEADMPVAMMPS--LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKS 235 Query: 241 E 241 + Sbjct: 236 K 236 >gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8] Length = 247 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 23/239 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 RL GR +++R I + V K A+GSC ++ GD ++ + P ++ K + Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVK 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST +R KR RS EI ++ A V+ I + +++Q Sbjct: 73 FRYNMAPFSTDDR-KRPG----PDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A +AL D M+D V++I+ G + G ++DL+ Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKIGGEMVLDLNAA 174 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D M + I +Q +++ F L LA + +LQ+ + Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---LTKEEFGRGLKLAMGACHQIYELQRTAL 230 >gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM 1728] gi|29336949|sp|Q9HIP2|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1 gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum] Length = 248 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59 +RL GR N++R I + V A+GS +++G ++ E P ++ H + Sbjct: 17 LRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIV 76 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 A Y M S R KR R+ EI ++I AL S + + +I + +V+ Sbjct: 77 KARYNMAAFSVDER-KRPG----PDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVL 131 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A +T A VAL D M D V + G + G+ ++DL Sbjct: 132 QADAGTRIAGLTAATVALADAGVPMRD-------------MVVGCTAGKVDGHMVLDLSK 178 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D +M +G IV +Q + ++D + +++ + + ++Q++ + Sbjct: 179 EEDNYGEADIPIAIMPKTGDIVLMQMDGD---VTEDELYQAMDMIFEATKRISQIQREAL 235 Query: 239 SNE 241 N+ Sbjct: 236 LNK 238 >gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2] gi|29337007|sp|Q9UXC2|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1 gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2] gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2] Length = 248 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 21/241 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R GR+ +++R I + V K A+GS + + G+T + E P + + Sbjct: 19 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 78 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R + R E+ ++I AL S V + I + +++Q Sbjct: 79 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G I+DL+ Sbjct: 134 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 180 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D M S + +V + + D F +LA I + L+++ + + Sbjct: 181 EDMWGEADMPIAMMPS--LNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKS 238 Query: 241 E 241 + Sbjct: 239 K 239 >gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5] Length = 247 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 23/239 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 RL GR +++R I + V K A+GSC ++ GD ++ + P ++ K + Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVK 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST +R KR RS EI ++ A V+ I + +++Q Sbjct: 73 FRYNMAPFSTDDR-KRPG----PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A +AL D M+D V++I+ G + G ++DL+ Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKINGEMVLDLNAA 174 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D M + I +Q +++ F L LA + +LQ+ + Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---LTKEEFERGLKLAVGACHQIYELQRTAL 230 >gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5] gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens Hrk 5] Length = 245 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 98/242 (40%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R+ GR ++MR + + V K A+GS V+ G+ +L E +P + Sbjct: 16 RVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEALPDRAILK 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y MLP S R S + R E+ ++I AL V L+ I + +++ Sbjct: 76 CRYSMLPFSVAERK-----SPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHILE 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTA+I VAL D M D VAAI+ G + ++D++ Sbjct: 131 ADGGTRTASIIAGSVALADAGIAMRDL-------------VAAIAVGKIGNVLVLDINGI 177 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D D +M G I +Q F+ L LA+ + Q + Sbjct: 178 EDQYGDGDMPIAMMPQRGEITLLQADG---VFTPQEIEEALRLAQKAFQKIYAEQVRALK 234 Query: 240 NE 241 + Sbjct: 235 TK 236 >gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15] gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14] gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51] gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5] gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15] gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14] gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51] gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5] Length = 245 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R+ GR+ +++R I + V K A+GS + + G+T + E P + + Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R + R E+ ++I AL S V + I + +++Q Sbjct: 76 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G ++DL+ Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED + D M S + +V + + F +L+ I + L+++ + + Sbjct: 178 EDMWGEADMPVAMMPS--LNQVTLFQLNGNMTPEEFRQAFDLSVKGINIIYNLEREALKS 235 Query: 241 E 241 + Sbjct: 236 K 236 >gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM 3091] gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera stadtmanae DSM 3091] Length = 232 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR N +R + + V A+GS ++ G+ +L ++ + Sbjct: 6 IRKDGRAYNTLRNMKMEVGVLNNADGSAYIECGNNKILVGVYGPREIHSKKHSKPDGAVL 65 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M P S R KR RS EI ++I A+ + L I I +V+ Sbjct: 66 RCKYNMAPFSVKER-KRPG----PNRRSTEISKLISEAITPNIFLEKYPRASIDISIEVL 120 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +A+GGTR I GA +AL D M+D ++A + G + + ++DL Sbjct: 121 EAEGGTRCLGIVGASLALADAEIPMKDL-------------ISACAVGKVDDHIVLDLSE 167 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED T D ++ +G I +Q +Q+ F L+LA D + +LQK+ + Sbjct: 168 QEDQTGQADMPLAIIPRTGEITFLQMDG---NLTQEEFEEALDLAYDGCYYINQLQKEAL 224 Query: 239 SNE 241 ++ Sbjct: 225 LSK 227 >gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1] gi|29336899|sp|Q97BZ5|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1 gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1] Length = 248 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59 +RL GR N++R I + V A+GS +++G ++ E P ++ H + Sbjct: 17 LRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVV 76 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 A Y M S R KR R+ EI ++I AL S + + +I + +V+ Sbjct: 77 KARYNMAAFSVDER-KRPG----PDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVL 131 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A +T A VAL D M D V + G + G+ ++DL Sbjct: 132 QADAGTRIAGLTAATVALADAGIPMRD-------------MVVGCTAGKVDGHIVLDLSK 178 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D +M +G IV +Q + ++D F+ ++ + + ++Q++ + Sbjct: 179 EEDNFGEADIPMAIMPKTGEIVLLQMDGD---VTEDEFYEATSMIIEATKKISQIQRNAL 235 Query: 239 SNE 241 N+ Sbjct: 236 LNK 238 >gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon] gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon] Length = 242 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 103/242 (42%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60 RLSGR ++R I + V K A+GSC + GD L + P +N K + Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAVYGPREMHPRHFQNAKMAVVK 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S +R KR RSQEI + +AL V+ I + +V+Q Sbjct: 74 YRYNMAPFSVDDR-KRPG----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +D GTRTA I A VAL D M D V++++ G + G ++DLD Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D M + I +Q ++ F L +A + +LQ+ + Sbjct: 176 EDNFGEADMPIAMIARTNTITLLQMDGR---LKKEEFERGLKIAMSGCRKIYELQRAALV 232 Query: 240 NE 241 + Sbjct: 233 EK 234 >gi|27528790|emb|CAD29620.1| hypothetical protein [Streptomyces olivaceoviridis] Length = 180 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 85/174 (48%), Positives = 112/174 (64%) Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T R RE+V GR GGR+ EI R+IGR+LR+VVD ALG I++DCDV+QADGG Sbjct: 1 MLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVVDYKALGENTIVLDCDVLQADGG 60 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTAAITGA+VAL D + + + + G V+A+S G++ G P++DL Y ED Sbjct: 61 TRTAAITGAYVALADAVAWAQGKKLIRAGRKPITGTVSAVSVGIVGGVPLLDLCYEEDVK 120 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D N V T G VEVQG+AE F++D A+L+LA +L LQ + Sbjct: 121 ADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVSGCTELAALQTKAL 174 >gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21] gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21] Length = 243 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R R +++R++ + V + A+GS ++ G +L ++ + + Sbjct: 19 RADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAVYGPRELFVRRLMQPNKAVLR 78 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y M P S +R KR RS EI ++ +AL V L I + +VI+ Sbjct: 79 CKYNMAPFSVDDR-KRPG----PDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIEVIE 133 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 A+GGTR A IT A VAL D M D V A + G G I+DL Sbjct: 134 AEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKSDGKVILDLSEV 180 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D +M +G I +Q +++ F L+LA + + + QK I Sbjct: 181 EDKEGQADVPIAIMPRTGEITLLQMDG---NLTEEEFEQALDLAINGCKIISEKQKAAIK 237 Query: 240 NE 241 N Sbjct: 238 NR 239 >gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] Length = 243 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R+ GR NQ+R I + V K A+GS +++G ++ + P ++ + Sbjct: 13 LRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 A Y M P S R + R+ E+ ++I AL SV+ + I + +V+ Sbjct: 73 RARYSMAPFSVDERKR-----PGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVL 127 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A IT A +AL D M D + + G + ++DL+ Sbjct: 128 QADAGTRVAGITVASLALADAGIPMRDL-------------IVGCAAGKIDDVVVLDLNK 174 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ D +M + I +Q + S + +++A D + ++Q + + Sbjct: 175 EEDNFGQADVPMAIMPRTKEIALLQMDGD---MSYEELTTAMDMAMDAAEKIHEMQVEAL 231 Query: 239 SNE 241 + Sbjct: 232 KRK 234 >gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group] gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group] Length = 242 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 23/241 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58 R+ GR+ N+MR++ V A+GS L + G+T ++ +V + N+K Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKDAL 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R ++ + RS EI +I + + + + + QI I V Sbjct: 70 VRCEYRMADFSTGDRRRKP----KGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR A I A +AL D M D V + S G LC P++DL+ Sbjct: 126 LQADGGTRAACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172 Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y EDS D +T + +Q A+ D F +++LA + + ++V Sbjct: 173 YIEDSAGGPDVTVGFLTKMDKVTLLQMDAK---LPMDTFETVMDLAIEGCKAIANYIREV 229 Query: 238 I 238 + Sbjct: 230 L 230 >gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] Length = 245 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R+ GR NQ+R I + V K A+GS +++G ++ + P ++ + Sbjct: 15 LRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIV 74 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 A Y M P S R + R+ E+ ++I AL SV+ + I + +V+ Sbjct: 75 RARYSMAPFSVDERKR-----PGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTR A IT A +AL D M D + + G + ++DL+ Sbjct: 130 QADAGTRVAGITVASLALADAGIPMRDL-------------IVGCAAGKIDDVVVLDLNK 176 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ D +M + I +Q + S + +++A D + ++Q + + Sbjct: 177 EEDNFGQADVPMAIMPRTKEIALLQMDGD---MSYEELTTAMDMAMDAAEKIHEMQVEAL 233 Query: 239 SNE 241 + Sbjct: 234 KRK 236 >gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions Length = 250 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 21/241 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R GR+ +++R I + V K A+GS + + G+T + E P + + Sbjct: 21 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 80 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R + R E+ ++I AL S V + I + +++Q Sbjct: 81 VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 135 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD G+R ++ A +AL D M D +A ++ G G I+DL+ Sbjct: 136 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 182 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 E + D M S + +V + + D F +LA I + L+++ + + Sbjct: 183 EAMWGEADMPIAMMPS--LNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKS 240 Query: 241 E 241 + Sbjct: 241 K 241 >gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6] gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6] Length = 253 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 22/239 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +++R + + + A+GSC ++ G ++ +V P ++ + Sbjct: 16 LRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAVYGPREVHPRHLQEVTRAIV 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M S R KR RS E+ ++ AL V+ S I + +V+ Sbjct: 76 RYRYNMASFSVEER-KRPG----PDRRSYELSKVSREALEPVILTSFFPRSVIDVFVEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QAD GTRTA I +K +++ + G + ++D Sbjct: 131 QADAGTRTAGIN-------------AAAVALADAGIPMKSMISSCAAGKVGDTIVLDPMK 177 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ D MT +G I +Q + D F + +A D+ +LQ+ + Sbjct: 178 EEDNFGQADLPIAMTPNGDITLMQMDG---NLTPDEFGQAVTMAMKGAKDIYELQRRAL 233 >gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1] gi|259645400|sp|A9A5C9|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1 gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1] Length = 244 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R GR ++ R I + K A+GS ++FGD +L V P + +T G + Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S G R + R EI ++I AL V L + + +V+Q Sbjct: 77 VRYHMEPFSVGERK-----NPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTR AA+T A VAL D M D VAAI+ G + I+D++ Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRD-------------MVAAIAAGKVADTVILDVNNE 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED D M + I +Q + + + + + D + +LQK ++ Sbjct: 179 EDQAGQADMPIGYMPNLEKITLLQLDG---VLTPEEYKKCIQVGVDGCKLVYELQKKALN 235 Query: 240 NE 241 ++ Sbjct: 236 DK 237 >gi|111220956|ref|YP_711750.1| ribonuclease PH [Frankia alni ACN14a] gi|111148488|emb|CAJ60159.1| ribonuclease PH [Frankia alni ACN14a] Length = 204 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 92/193 (47%), Positives = 123/193 (63%), Gaps = 7/193 (3%) Query: 46 KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105 VP W + + GW+TAEY MLPR+T R RE+V GR GGR+ EI R+IGR+LR+ +DL+ Sbjct: 4 GVPRWRKGSGLGWVTAEYSMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRACIDLA 63 Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165 ALG I IDCDV+ ADGGTRTAAITGA+VAL D + + + + VAA+S Sbjct: 64 ALGENTIAIDCDVLLADGGTRTAAITGAYVALVDAARWLGRPAA-------ITTSVAAVS 116 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 G++ G P++DL Y EDST D D N V T + VEVQG+AE F + +L+LA Sbjct: 117 VGVVRGEPMLDLAYTEDSTADTDMNVVCTGADGFVEVQGTAEGVPFDRAMLDNLLDLAVF 176 Query: 226 RIADLIKLQKDVI 238 A L ++Q + + Sbjct: 177 GCAQLAEIQAEAL 189 >gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis] Length = 243 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 22/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59 +RL GR+ +MR++ V A+GS + + G+T ++ +V + + Sbjct: 9 LRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAVYGPHEVQNKNQQLPDQALV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG+R +R + R+ EI +I + + + + + QI I V+ Sbjct: 69 RCEYSMANFSTGDRPRR----SKGDRRATEISLVIRQTMEATILTHLMPRTQIDIFVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR+A I A +AL D M D V + + G L P++D++Y Sbjct: 125 QADGGTRSACINAATLALADAGIPMCDL-------------VTSCAAGYLNSTPLLDMNY 171 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D +MT + +Q ++ D F ++ LA + +++ +DV+ Sbjct: 172 MEDSAGGPDVAVGLMTKMDKLSLLQMDSK---LPMDIFETVMQLAIEGCKAIVRYIQDVL 228 >gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii DSM 2375] gi|222434092|gb|EEE41257.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii DSM 2375] Length = 233 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R GR+ N++R I + V + A+GS ++ G +L + + G I Sbjct: 5 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S +R + RS EI ++ ALR + L + I +VI Sbjct: 65 RCRYNMAPFSVDDRKR-----PGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVI 119 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +A+GGTR A IT A VAL D M+D V + G + ++DL Sbjct: 120 EAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDKIVLDLSE 166 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D +M +G I +Q + SQ+ F +NLA + + ++QK+ + Sbjct: 167 VEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKEAL 223 Query: 239 SNE 241 + Sbjct: 224 MKK 226 >gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC 35061] gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061] Length = 234 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R GR+ N++R I + V + A+GS ++ G +L + + G I Sbjct: 6 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 65 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S +R + RS EI ++ ALR + L + I +VI Sbjct: 66 RCRYNMAPFSVDDRKR-----PGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVI 120 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +A+GGTR A IT A VAL D M+D V + G + I+DL Sbjct: 121 EAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDEIILDLSE 167 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D +M +G I +Q + SQ+ F +NLA + + ++QK+ + Sbjct: 168 VEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKEAL 224 Query: 239 SNE 241 + Sbjct: 225 MKK 227 >gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374] gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374] Length = 234 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R GR+ N++R I + V + A+GS ++ G +L + + G I Sbjct: 6 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 65 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S +R + RS EI ++ ALR + L + I +VI Sbjct: 66 RCRYNMAPFSVDDRKR-----PGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVI 120 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +A+GGTR A IT A VAL D M+D V + G + ++DL Sbjct: 121 EAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDKIVLDLSE 167 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D +M +G I +Q + SQ+ F +NLA + + ++QK+ + Sbjct: 168 VEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKEAL 224 Query: 239 SNE 241 + Sbjct: 225 MKK 227 >gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor] gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor] Length = 242 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 23/241 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58 R+ GR+ N+MR++ V A+GS L + G+T ++ +V + N+ Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEAL 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R ++ + RS EI +I + + + + + QI I V Sbjct: 70 VRCEYRMAEFSTGDRRRKP----KGDRRSTEISLVIRQTMEASILTHLMPRSQIDIYVQV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR+A I A +AL D M D V + S G LC P++DL+ Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172 Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y EDS D ++ + +Q A+ D F ++ LA + + ++V Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPMDTFENVMGLAIEGCKAIATYIREV 229 Query: 238 I 238 + Sbjct: 230 L 230 >gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184] gi|254782537|sp|A1RST0|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1 gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum DSM 4184] Length = 246 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R GR +QMRE+++T + A+GS +V +G T + + P + G + Sbjct: 13 VRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST + K R EI +++ AL V L +I + +++ Sbjct: 73 RVRYHMAPFSTKDERKSPT----PTRREIEISKILREALEPAVVLEQYPRSRIDVFIEIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADG TR A++T A +AL D +M D V +S G++ G ++DL+ Sbjct: 129 QADGSTRVASLTAASLALADAGVYMRDL-------------VIGVSVGLVDGAVVLDLNG 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D M + +Q +++D F LNLA + + +D + Sbjct: 176 LEDQYGEGDLPVGYMPNLKRFTLLQLDG---AWTRDKFLEALNLAIKGAEFVYQKARDAL 232 Query: 239 SNE 241 ++ Sbjct: 233 KSK 235 >gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi] Length = 246 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 22/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N++R I V +GS V+ G+T +L + N + + Sbjct: 9 LRLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSKKSNHEEAIVN 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y M STG R KR R +SQE+ + +AL + + + QI + +V+Q Sbjct: 69 CQYSMATFSTGERKKRP----RGDRKSQEMTIHLKQALSAAIKMELYPRSQIDVYIEVLQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179 ADGG A++ A +AL D + K +V A + + G P++D+ + Sbjct: 125 ADGGNYCASVNAATLALIDAGICL-------------KEYVCACTASLANGNVPLMDVSH 171 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+++ + SG I ++ S F DH +L A ++ + + Sbjct: 172 LEENSGGPTLTVASLPSSGKIAFMEMSQR---FHLDHLPKVLETALKGCREVQNVIDRAV 228 Query: 239 SNEV 242 V Sbjct: 229 REHV 232 >gi|225454436|ref|XP_002280302.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera] gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera] Length = 241 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 22/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59 +RL GR+ +MR+I A+GS + G+T ++ +V + + + Sbjct: 9 LRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQQISDQALV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG+R+++ + RS EI +I + + + + + QI I V+ Sbjct: 69 RCEYTMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR+A I A +AL D M D V + S G L P++DL+Y Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDLNY 171 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D ++ + +Q A+ D F ++ LA + + ++V+ Sbjct: 172 VEDSAGGPDVTVGILPKLDKVTLLQMDAK---LPMDIFENVMQLAIEGCKAIANYIREVL 228 >gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus mucosus DSM 2162] gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus mucosus DSM 2162] Length = 243 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 23/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R+ GR+ +++R + + V K A GS LV++G+T L + P I + Sbjct: 13 LRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAVL 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST R S R E+ ++I AL SVV + I + +++ Sbjct: 73 RVRYHMAPFSTSERK-----SPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEIL 127 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA +T A +AL D M+D + +V V +D++ Sbjct: 128 QADGGTRTAGLTAASLALADAGIPMKDLVIGVAVGKVGGVLV-------------LDINE 174 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D + ++ IV +Q + + + F + +A + + K+ K+ + Sbjct: 175 LEDEYGEADLPVGIAPNTNEIVLLQLNG---VLTPEEFKQAMEMAFKGVEQIYKVAKEAM 231 >gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp. lyrata] gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp. lyrata] Length = 241 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 24/241 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58 +RL GR+ N+MR+I V A+GS + + G+T ++ ++ + H Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R ++ + RS E+ +I + + + + + QI I V Sbjct: 69 VLCEYSMAQFSTGDRRRQ-----KFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR+A I A +AL D M D + + S G L P++DL+ Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDLA-------------VSCSAGYLNSTPLLDLN 170 Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y EDS D ++ + +Q A+ + F + LA + + + ++V Sbjct: 171 YVEDSAGGADVTVGILPKLDKVTLLQMDAK---LPMETFETVFALASEGCKAIAERIREV 227 Query: 238 I 238 + Sbjct: 228 L 228 >gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter thermautotrophicus str. Delta H] gi|29336573|sp|O26779|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1 gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta H] Length = 240 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59 +R GR +++R + + + + A+GS ++FG +L + ++ I Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R + RS EI ++ ALR + L I + +V+ Sbjct: 76 RCRYNMAPFSVEERKR-----PGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +A+GGTR A IT A VAL D M D V A + G + ++DL Sbjct: 131 EAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKVGDQVVLDLSE 177 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D ++ + I +Q + + F L+LA + + ++QK+ + Sbjct: 178 EEDKEGQADVPVAILPRTREITLLQSDG---NLTPEEFERALDLAVEGCLRIHEVQKEAL 234 Query: 239 SNE 241 Sbjct: 235 RKR 237 >gi|15806593|ref|NP_295308.1| ribonuclease PH [Deinococcus radiodurans R1] gi|21759421|sp|Q9RU11|RNPH_DEIRA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase gi|6459349|gb|AAF11146.1|AE002002_4 ribonuclease PH [Deinococcus radiodurans R1] Length = 246 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 91/228 (39%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR R +S+ R V+ +A GS +K G T +L T TL++K +R K GW+TAEY Sbjct: 11 GRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEYS 70 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPRST +R RE Q GR EIQR++GRALRS +DL ++ + +DCDV+ ADGG Sbjct: 71 MLPRSTTDRQARE--RNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGG 128 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TR A++ ALHD + + + +V AIS G++ VDLDY ED Sbjct: 129 TRVASVLAGHAALHDFCDRLINSGQL--SEWPIVHNVGAISVGLIGDELRVDLDYEEDKV 186 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D N + TD+G +VEVQG AE + D + +L+ + D+++ Sbjct: 187 ARADLNVIATDTGLLVEVQGGAELGPITVDEYTRLLSCGVASVQDVMR 234 >gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790] gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790] Length = 239 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 22/242 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR N+MR I +T V A+GS +++G ++ + E P +N + Sbjct: 12 LRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVK 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 A Y M S R + R+ EI ++I AL S + + L +I + +V++ Sbjct: 72 ARYNMAGFSVEERKR-----PGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLE 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A++T A VA+ D M+D + G G ++DL Sbjct: 127 ADAGTRIASLTAASVAVADAGIPMKDL-------------PVGCTAGKANGKVVLDLSKD 173 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ D D ++ SG I+ +Q + S+ + + + ++ ++Q++ + Sbjct: 174 EDNYGDADIPMAILPKSGKIILLQLDGD---VSEQELEEAMEMMLGAMKNISRIQREALM 230 Query: 240 NE 241 N Sbjct: 231 NR 232 >gi|15233167|ref|NP_191721.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana] gi|186511299|ref|NP_001118878.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana] gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana] gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana] gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana] gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana] gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana] gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana] Length = 241 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 24/241 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58 +RL GR+ N+MR+I V A+GS + + G+T ++ ++ + H Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R ++ + RS E+ +I + + + + + QI I V Sbjct: 69 VLCEYSMAQFSTGDRRRQ-----KFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR+A I A +AL D M D + + S G L P++DL+ Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDLA-------------VSCSAGYLNSTPLLDLN 170 Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y EDS D ++ + +Q A+ + F + LA + + + ++V Sbjct: 171 YVEDSAGGADVTVGILPKLDKVSLLQMDAK---LPMETFETVFALASEGCKAIAERIREV 227 Query: 238 I 238 + Sbjct: 228 L 228 >gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa] gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides] gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa] Length = 241 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 22/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59 +RL GR+ +MR++ A+GS + + G+T ++ +V + + Sbjct: 9 LRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG+R ++ + RS EI +I +A+ + + + QI I V+ Sbjct: 69 RCEYSMANFSTGDRRRKP----KGDRRSTEISLVIRQAMEECILTNLMPRSQIDIYVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR+A I A +AL D M D V + S G L P++DL+Y Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGFLNSTPLLDLNY 171 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D ++ + +Q A+ D F ++ LA + + ++V+ Sbjct: 172 VEDSAGGPDVTVGILPKLDKVTLLQMDAK---LPIDTFENVMQLAVEGCKAIANYIREVL 228 >gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor] gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor] Length = 242 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 23/241 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58 R+ GR+ N+MR++ + A+GS L + G+T ++ +V + N+ Sbjct: 10 FRVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEAL 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R ++ + RS EI +I + + + + + QI I V Sbjct: 70 VRCEYRMAEFSTGDRRRKP----KGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR+A I A +AL D M D V + S G LC P++DL+ Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172 Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y EDS D ++ + +Q A+ D F ++ LA + + ++V Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPMDTFENVMGLAIEGCKAIASYIREV 229 Query: 238 I 238 + Sbjct: 230 L 230 >gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus] gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus] Length = 245 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 21/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N++R I V +GS V+ G+T +L + P N + + Sbjct: 9 LRLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAKKSNHEECVVN 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y M STG R KR R +SQE+ + +AL + + QI + +V+ Sbjct: 69 CQYSMATFSTGERKKRP----RGDRKSQEMTIHLQQALSAAIKTDLYPKSQIDVYIEVLM 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGG A++ A +AL D + K +V A + + P++D+ Sbjct: 125 ADGGNYCASVNAATLALIDAGICL-------------KEYVCACTASLAGKVPLMDVSNL 171 Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + + +SG I ++ S F DH +L A ++ K+ + Sbjct: 172 EEMSGGPTLTVASLPNSGKIAFMEMSQR---FHLDHLPNVLETALQGCREVQKIIDQAVR 228 Query: 240 NEV 242 + V Sbjct: 229 DHV 231 >gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str. Marburg] gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter marburgensis str. Marburg] Length = 231 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 98/243 (40%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59 +R GR +++R + + + + A+GS ++FG +L + ++ I Sbjct: 7 VREDGRAFDELRPLRIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 66 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R + RS EI ++ ALR + L I + +V+ Sbjct: 67 RCRYNMAPFSVEERKR-----PGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVL 121 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +A+GGTR A IT A VAL D M D V A + G + ++DL Sbjct: 122 EAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKVNDQVVLDLSE 168 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D ++ + I +Q S D F L+LA + + ++QK+ + Sbjct: 169 EEDKAGQADVPVAILPRTREITLLQSDG---NLSDDEFERALDLAVEGCLRIHEVQKEAL 225 Query: 239 SNE 241 Sbjct: 226 RKR 228 >gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays] gi|194692034|gb|ACF80101.1| unknown [Zea mays] Length = 242 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 23/241 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58 R+ GR+ N+MR++ V A+GS L + G+T ++ +V + N+K Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEAL 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R ++ + RS EI +I + + + + + QI I V Sbjct: 70 VRCEYRMAEFSTGDRRRKP----KGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR+A I A +AL D M D + + S G LC P++DL+ Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIA-------------TSCSAGYLCSTPLLDLN 172 Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y EDS D ++ + +Q A+ D F ++ LA + + ++V Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPIDTFENVMGLAIEGCKAIATYIREV 229 Query: 238 I 238 + Sbjct: 230 L 230 >gi|302341929|ref|YP_003806458.1| ribonuclease PH [Desulfarculus baarsii DSM 2075] gi|301638542|gb|ADK83864.1| ribonuclease PH [Desulfarculus baarsii DSM 2075] Length = 232 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 141/240 (58%), Gaps = 12/240 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR QMR + ++ V+ YAEGS + FG T +L TA++E+ P ++ GWITA Sbjct: 3 RIDGRNPGQMRPVVISGGVNPYAEGSAICAFGQTKVLCTASVEQGAPRFLEGAGQGWITA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY MLPR+T R R+ Q GR++EI R++GRALR+ DL+AL I IDCDV+ A Sbjct: 63 EYAMLPRATHTRTGRDHA---QAGRAKEISRLVGRALRAAADLAALDGYTIRIDCDVLVA 119 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGTRTAA++G WVA + + Q + V A+S G + G +VDL Y E Sbjct: 120 DGGTRTAAVSGGWVA--------LALALRGLGLQPPR-QVMALSAGRVDGRLLVDLCYAE 170 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 DS+ ++D N V+ G ++E+QG+ ER FS + ++ +++ D++ Q ++ Sbjct: 171 DSSAELDLNMVLAADGQLIEIQGTGERGVFSPEELMELIAISRQAAGDIVAAQLAAVNGP 230 >gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays] Length = 242 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 23/241 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58 R+ GR+ N+MR++ V A+GS L + G+T ++ +V + N+K Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEAL 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + EY M STG+R ++ + RS EI +I + + + + + QI I V Sbjct: 70 VRCEYRMAEFSTGDRRRKP----KGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGGTR+A I A +AL D M D + + S G LC P++DL+ Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIA-------------TSCSAGYLCSTPLLDLN 172 Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y EDS D ++ + +Q A+ D F ++ LA + + ++V Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPIDTFENVMGLAIEGCKAIATYIREV 229 Query: 238 I 238 + Sbjct: 230 L 230 >gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus V24Sta] gi|254782538|sp|B1Y978|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1 gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Thermoproteus neutrophilus V24Sta] Length = 246 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R GR +QMRE+ ++ V A+GS +V +G T + + P + G + Sbjct: 13 VRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST + K R EI +++ AL V L +I + +++ Sbjct: 73 RVRYHMAPFSTKDERKSPT----PSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADG TR A++T A +AL D +M D V +S G++ G ++DL+ Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDL-------------VIGVSVGLVDGTVVLDLNG 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D M + +Q + +D LNLA + + +D + Sbjct: 176 LEDQYGEGDLPVGYMPNLRRYTLLQLDG---AWGRDKLLEALNLAVKGAEFVYQKARDAL 232 Query: 239 SNE 241 N Sbjct: 233 KNR 235 >gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis] gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis] Length = 241 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 22/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +RL GR+ +MR++ A+GS + + G+T ++ +V + + Sbjct: 9 LRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQQIIDQALV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG+R+++ + RS EI +I + + + + QI I V+ Sbjct: 69 RCEYTMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR+A I A +AL D M D V + S G L P++DL+Y Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDLNY 171 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D ++ + +Q A+ D F ++ LA + + ++++ Sbjct: 172 VEDSAGGPDVTVGILPKLDKVTLLQMDAK---LPIDTFENVMQLAVEGCKAIANYIREIL 228 >gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii] Length = 246 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 99/245 (40%), Gaps = 23/245 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58 R GR+ +++R+I V + A+GS ++ G+T +L T ++ Sbjct: 12 FRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKVL 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + +Y M STG R R + RSQE+ + R ++ + QI I V Sbjct: 72 LNCQYSMATFSTGERKTRP----KGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q+DGG A + A +A+ D M D +V A + +L P+VD+ Sbjct: 128 LQSDGGNYCACVNAATLAVIDAGIPMRD-------------YVCACTSSLLEDTPVVDIS 174 Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y E+S + + S IV Q + + D+ +L++ D+ + Sbjct: 175 YLEESVGSPEMVVALLPKSEQIVLFQ---QNSRLHVDNLEKVLDMGIKGCTDVYGILDQS 231 Query: 238 ISNEV 242 + V Sbjct: 232 VREHV 236 >gi|94986185|ref|YP_605549.1| ribonuclease PH [Deinococcus geothermalis DSM 11300] gi|94556466|gb|ABF46380.1| RNAse PH [Deinococcus geothermalis DSM 11300] Length = 237 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 87/233 (37%), Positives = 128/233 (54%), Gaps = 5/233 (2%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR R +S+ R V+ +A GS ++ G T +L T ++E+K +R K GW+TAEY Sbjct: 8 GRDALTPRPLSVRRGVNPHAPGSVHLQLGRTEILATVSVEDKPAPHMRGKKEGWLTAEYA 67 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T +R RE Q GR EIQR++GRALR+ +DL + + +DCDV+ ADGG Sbjct: 68 MLPRATTDRQARE--RNLQNGRRHEIQRLLGRALRAGIDLRHFRGQTLYVDCDVLVADGG 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TR A++ + ALHD + L V A+S G++ VDLDY ED Sbjct: 126 TRVASVLAGYAALHDFADRLIHSGKL--SEWPLVHAVGAVSVGLVGDELRVDLDYAEDKA 183 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236 D N V TDSG ++E QG AE + + +L + + + L+ ++Q+ Sbjct: 184 ARADLNVVATDSGLLIEAQGGAEEGPITPAEYVRLLTVGVEAVGALLREVQRQ 236 >gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti] gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti] gi|108870517|gb|EAT34742.1| exosome complex exonuclease RRP41, putative [Aedes aegypti] gi|108870766|gb|EAT34991.1| exosome complex exonuclease RRP41, putative [Aedes aegypti] Length = 245 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 21/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N++R I V +GS ++ G+T +L + P + + + Sbjct: 9 LRLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAKKSSHEEVIVN 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y M STG R +R R +SQE+ + +AL + + QI + +V+ Sbjct: 69 CQYSMATFSTGERKRRP----RGDRKSQEMTIHLQQALSAAIKTELYPKSQIDVYIEVLM 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGG A++ A +AL D + K +V A + + P++D+ Sbjct: 125 ADGGNYCASVNAATLALIDAGICL-------------KEYVCACTASLAGKIPLMDVSNL 171 Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + + SG I ++ S F DH +L A ++ K+ + Sbjct: 172 EEMSGGPTLTVASLPSSGKIAFMEMSQR---FHLDHLPKVLETALQGCREVQKIIDQAVR 228 Query: 240 NEV 242 V Sbjct: 229 EHV 231 >gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM 11548] gi|254782536|sp|A3MUP1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1 gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum calidifontis JCM 11548] Length = 246 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R GR +QMRE+ + A+GS +V +G T + + P + G + Sbjct: 13 LRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST + K R EI +++ AL V L +I + +++ Sbjct: 73 RVRYHMAPFSTKDERKSPT----PSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADG TR A++T A +AL D +M D + + G ++DL+ Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGL-------------VDGTVVLDLNG 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D M + +Q ++++ F L LA + ++ ++ + Sbjct: 176 LEDNYGEGDMPVGYMPNLRRFTLLQLDG---AWTREKFLEALGLAVKGAEYVYQVAREAL 232 Query: 239 SNE 241 N+ Sbjct: 233 KNK 235 >gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum subterraneum] gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum subterraneum] Length = 246 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R+ GR+ ++MR++ + V + +GS V+ G T + +V P + G I Sbjct: 15 LRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGVIGPREVHPKHLELPDKGVI 74 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M S R R E+ ++I AL +VV L I I +VI Sbjct: 75 NCRYHMASFSVDERK-----PLGMTRREIELSKVIREALETVVFLEEFPRMMIDIFVEVI 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTRTA IT A +AL D M D +AAI+ G + G ++D++ Sbjct: 130 QADGGTRTAGITAASLALADAGIPMAD-------------MIAAIAVGKVDGVLVLDINE 176 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D + IV +Q + + + L +A+ + + +Q + + Sbjct: 177 QEDKYGEADMPVAIAPHLNSIVLLQLNGR---MTPEEVDKGLEMAQQAVQKIHHMQIEAL 233 Query: 239 SNE 241 + Sbjct: 234 KRK 236 >gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis] gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis] Length = 247 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59 +R+ GR+ +++R++ V A+GS ++ G+T L T +V + + Sbjct: 12 LRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRVLL 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 ++GM STG R K+ R ++ E+ M+ R + + ++ QI I V+ Sbjct: 72 NVQFGMATFSTGERKKKP----RGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVL 127 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG A I +AL + LK +V+A + + P++D++Y Sbjct: 128 QADGGNHVACINAVTLALINAGI-------------PLKDYVSACTVSFVNDTPLMDINY 174 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+ST ++ S IV Q + D+ +L LA D+ L I Sbjct: 175 LEESTGGPQLTLAILPKSDKIVLFQMDSR---LHMDNMDKVLALAMKGCKDIYVLLHRTI 231 Query: 239 SNE 241 + Sbjct: 232 LED 234 >gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae] gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae] Length = 246 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59 R+ GR+ +++R++ V A+GS ++ G+T L T +V + Sbjct: 13 RIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATVYGPHEVRKGRGKIQHDRAVV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 ++ M STG R R + RSQE+ + + +V+ QI I ++ Sbjct: 73 NCQFSMATFSTGERKSRP----KGDRRSQEMSMHLRQTFEAVIVTELFPRSQIDIYVQIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG A + A +A+ D M K +V A + G + P++D+ Y Sbjct: 129 QADGGNYCACVNAATLAVIDAGIPM-------------KDYVCACTAGFIQDSPLLDISY 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+S +M S IV ++ ++ D+ +L+LA D+ + + Sbjct: 176 VEESAGAPFLTVAMMPKSEQIVLLEMNSR---LHADNMEKVLDLATQGCKDVFAVLDRHV 232 Query: 239 SNEV 242 + V Sbjct: 233 RDHV 236 >gi|161616815|ref|YP_001590779.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161366179|gb|ABX69947.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 174 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 90/176 (51%), Positives = 115/176 (65%), Gaps = 2/176 (1%) Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 MLPR+T R REA G+QGGR+ EIQR+I RALR+ VDL LG I +DCDVIQADGG Sbjct: 1 MLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG 60 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 TRTA+ITGA VAL D L + +N + +KG VAA+S G++ G I DL+Y EDS Sbjct: 61 TRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSA 118 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D N VMT+ G I+EVQG+AE FS + +L LA+ I ++ QK + N Sbjct: 119 AETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 174 >gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2] gi|29336868|sp|Q8ZVM9|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1 gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2] Length = 246 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R GR +QMRE+ + V A+GS +V +G T + + P + G + Sbjct: 13 VRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST + K R EI +++ AL + L +I + +++ Sbjct: 73 RVRYHMAPFSTKDERKSPT----PSRREIEISKILREALEPAIVLEQYPRSRIDVFVEIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADG TR A++T A +AL D +M D + + G ++DL+ Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGL-------------VDGTVVLDLNG 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED + D M + +Q +++D F LNLA + ++ +D + Sbjct: 176 LEDQYGEGDLPLGYMPNLKRFTLLQLDG---AWTRDMFLQALNLAVRGAEYVYQIARDAL 232 Query: 239 SNE 241 N+ Sbjct: 233 KNK 235 >gi|294668514|ref|ZP_06733611.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309477|gb|EFE50720.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 157 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 74/137 (54%), Positives = 107/137 (78%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65 R + +R + +T +A+GS L++ G+T ++ TA+++E VP ++R GW+TAEYGM Sbjct: 9 RAADALRAVKITPHFLPHADGSVLIECGNTKVICTASIDESVPPFLRGKGQGWVTAEYGM 68 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 LP ST R++REA +G+QGGR+QEIQR+IGR+LR+ VD++ LG RQI+IDCDVIQADGGT Sbjct: 69 LPASTATRMRREAAAGKQGGRTQEIQRLIGRSLRAAVDMAKLGERQILIDCDVIQADGGT 128 Query: 126 RTAAITGAWVALHDCLQ 142 RTA+I+GA+VAL ++ Sbjct: 129 RTASISGAYVALALAMK 145 >gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167] gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167] Length = 242 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 21/241 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R+ GR + R +++ V A GS LV +G+T +L E +P +I + Sbjct: 15 RVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKAVVR 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST +R + R EI +++ +AL +VV L I + +V+Q Sbjct: 75 VRYHMAPFSTDDRK-----NPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEVLQ 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG TR +IT A +AL D M D V +S G + IVDL+ Sbjct: 130 ADGSTRVTSITAASLALADAGIPMRDL-------------VVGVSVGKINDTVIVDLNKL 176 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ED+ D D + + V + + L LA ++ + ++V+ Sbjct: 177 EDNYGDGDLPIAIAYRKNWVLL--MQLDGVWKPSEVKRGLELAFKAAENIYRNMREVLKG 234 Query: 241 E 241 Sbjct: 235 R 235 >gi|51473808|ref|YP_067565.1| ribonuclease PH [Rickettsia typhi str. Wilmington] gi|51460120|gb|AAU04083.1| Phosphate-dependent exonuclease [Rickettsia typhi str. Wilmington] Length = 168 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 93/169 (55%), Positives = 121/169 (71%), Gaps = 2/169 (1%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ NQ+R ISL +AEGSCL+K G+TH++ +AT E VP ++R GWIT Sbjct: 1 MRQSGRKSNQLRPISLELSPLIHAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNRGWIT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 AEYGM+P ST NR+KRE G+QGGR+QEIQR+IGR +R V++L LG RQIIIDCDVI Sbjct: 61 AEYGMIPGSTSNRIKREVALGKQGGRTQEIQRLIGRVMRCVINLQKLGERQIIIDCDVIN 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 ADGGTRT+AITG+++ALH ++ + + L +AAISCG+ Sbjct: 121 ADGGTRTSAITGSYIALHLAIRLLMK--KRILKVNTLISQIAAISCGIY 167 >gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex] Length = 246 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 23/245 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58 +R+ GR+ N++R I + + A+GS ++ G+T +L ++ + Sbjct: 12 LRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVYGPHEIRGSKSKALHDKAF 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + +Y S G R +R R +S E+ + + + QI I +V Sbjct: 72 VNCQYSTATFSMGERKRRP----RGDRKSTEMSTHLEETFAAAIRTELYPRSQIDIFVEV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADGG TA + A +AL D LK V + + ++ P+VD++ Sbjct: 128 LQADGGNYTACVNAAMMALVDAGV-------------PLKDTVVSCTASLVKDVPLVDVN 174 Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + E S + ++ SG IV + + F DH +L+ A D+ + ++ Sbjct: 175 HVERSGGSPELVVSILPHSGEIVYMSLTQR---FHIDHLSKVLDTAIKGCKDIGAILNEI 231 Query: 238 ISNEV 242 + + Sbjct: 232 MKGHL 236 >gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium M1] gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium M1] Length = 236 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R GR +++R I + V K A+GS ++ G +L + + + G I Sbjct: 11 LRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKILASVYGPRESYIRRLLKPNTGVI 70 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S +R + RS EI ++ ALR + L + + + +VI Sbjct: 71 RVRYNMAPFSVDDRKR-----PGPDRRSTEISKIAADALRPALMLESFPRSMVDVSIEVI 125 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 +A+GGTR A IT +K V + G + ++DL Sbjct: 126 EAEGGTRCAGIT-------------AAAVALADAGIPMKDIVVGCAAGKVNDEIVLDLSE 172 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D +M +G I +Q +++ F L+LA + + ++Q + + Sbjct: 173 KEDKEGQADVPIAIMPRTGEITLLQADG---NLTEEEFEEALDLAIEGCMKISEIQHEAL 229 Query: 239 SNE 241 Sbjct: 230 KTR 232 >gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1] gi|29337017|sp|Q9YC03|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1 gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1] Length = 246 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 99/241 (41%), Gaps = 23/241 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R GR +R + + + A+GS LV+FG T +L E + + Sbjct: 17 RHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALR 76 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R S R E+ +++ AL VV I + +V+Q Sbjct: 77 VRYHMAPFSTDERK-----SPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRTAA+T A +AL D M V ++ G + G +VD+D Sbjct: 132 ADGGTRTAAVTAASLALADAGIPMRAL-------------VGGVAVGKIQGVLVVDVDEL 178 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D D G I +Q + + + F L +A I +++++K+ I Sbjct: 179 EDMYGEADMPVAAAPDIGEITLLQLNG---VLTGEEFRTALAMALRAIDRVVEMEKEAIR 235 Query: 240 N 240 Sbjct: 236 K 236 >gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative [Tribolium castaneum] Length = 249 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 98/244 (40%), Gaps = 22/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ +++R I V +GS ++ G T +L +V + Sbjct: 13 LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVGFAKAQHDSAVVN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ M STG R KR R +S EI + +AL + + + QI + +V+ Sbjct: 73 CQFSMAVFSTGERKKRP----RGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLH 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179 ADGG A + A +AL D LK +V A + + P++D+ + Sbjct: 129 ADGGIYPACVNAATLALIDAGI-------------PLKEYVCACTASLANNDVPLLDVSH 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+ + SG IV ++ S F DH +L+ A D+ + + + Sbjct: 176 QEEIIGGPTLTVAALPMSGKIVLMEMSQR---FHVDHLQKVLDKALQGCKDIKSILDEAV 232 Query: 239 SNEV 242 + + Sbjct: 233 KSHI 236 >gi|289607155|emb|CBI60875.1| unnamed protein product [Sordaria macrospora] Length = 148 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 80/127 (62%), Positives = 103/127 (81%) Query: 8 ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67 ++MR I++ +++AEGSCL+ FGDT +L TA+LEE++P W+R GW+TAEYGMLP Sbjct: 22 PDEMRPITIETNFTRHAEGSCLIGFGDTKVLVTASLEERLPPWLRGKGEGWVTAEYGMLP 81 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 R+T R REA G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQADGGTRT Sbjct: 82 RATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQADGGTRT 141 Query: 128 AAITGAW 134 A+I+GAW Sbjct: 142 ASISGAW 148 >gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1] Length = 240 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 22/242 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR N+MR I + V + A+GS +++G ++ + E P +N + Sbjct: 13 LRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVK 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 A Y M S R + R+ EI +++ AL S + L L +I + V++ Sbjct: 73 ARYNMSGYSVEERKR-----PGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLE 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A++T + VA+ D M D V + G G ++DL Sbjct: 128 ADAGTRIASLTASSVAVADAGVPMRDL-------------VVGCTAGKADGKIVLDLSKD 174 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ D ++ +G +V +Q + +++ F ++ D + + +LQ++ + Sbjct: 175 EDNFGQADIPMAILPRTGKVVLLQLDGD---VTEEEFNEATSMMMDAMPRISELQRNALM 231 Query: 240 NE 241 ++ Sbjct: 232 SK 233 >gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum] Length = 251 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 98/246 (39%), Gaps = 24/246 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGW 58 +R GR+ +++R I V +GS ++ G T +L +V Sbjct: 13 LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSAV 72 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + ++ M STG R KR R +S EI + +AL + + + QI + +V Sbjct: 73 VNCQFSMAVFSTGERKKRP----RGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEV 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDL 177 + ADGG A + A +AL D LK +V A + + P++D+ Sbjct: 129 LHADGGIYPACVNAATLALIDAGI-------------PLKEYVCACTASLANNDVPLLDV 175 Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + E+ + SG IV ++ S F DH +L+ A D+ + + Sbjct: 176 SHQEEIIGGPTLTVAALPMSGKIVLMEMSQR---FHVDHLQKVLDKALQGCKDIKSILDE 232 Query: 237 VISNEV 242 + + + Sbjct: 233 AVKSHI 238 >gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar] gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar] Length = 245 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 96/244 (39%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59 RL GR+ ++R++ V A+GS ++ G+T L +V T I Sbjct: 13 RLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVI 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M ST R +R + S E+ + + + V + QI I ++ Sbjct: 73 NCQYSMATFSTAERKRRPHGDRK----STEMSLHLKQTFEAAVLTNLYPRSQIDIYVKIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q+DGG +A + A +A+ D M D +V A + G + P+ DL + Sbjct: 129 QSDGGNYSACVNAATLAVVDAGIPMRD-------------YVCACTAGFVDETPLADLCH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+S + GHI +Q A QDH ++ A + K+ +V+ Sbjct: 176 AEESGGGTSLALALLPRGGHIALLQMDAR---LHQDHLETLMEAAMTACKGVSKVLDEVV 232 Query: 239 SNEV 242 + Sbjct: 233 RQHL 236 >gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius] Length = 245 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59 RL GR+ ++R++ V A+GS ++ G+T L +V M T I Sbjct: 13 RLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVI 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M ST R +R + S E+ + + + V + QI I ++ Sbjct: 73 NCQYSMATFSTAERKRRPHGDRK----STEMSLHLKQTFEAAVLTNLYPRSQIDIYVKIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q+DGG +A + A +A+ D M D +V A + G + P+ DL + Sbjct: 129 QSDGGNYSACVNAATLAVIDAGIPMRD-------------YVCACTAGFVDETPLADLCH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+S + GHI +Q A QDH ++ A + K+ V+ Sbjct: 176 AEESGGGTSLALALLPRGGHIALLQMDAR---LHQDHLETLMEAAMTACKGVSKVLDQVV 232 Query: 239 SNEV 242 + Sbjct: 233 RQHL 236 >gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum OPF8] gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum OPF8] Length = 248 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR ++MR I + V + A+GS V++G +L +V P + I Sbjct: 18 IRTDGRLPHEMRPIKMMVGVLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALI 77 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 A Y M P ST R + RS E+ ++I AL+ + I I +V+ Sbjct: 78 RARYNMAPFSTPERRR-----PGPDRRSIELSKVIREALKPAIFAENYPGSVIDIFVEVL 132 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ++D GTR A I ++G V+A S G + + +VD ++ Sbjct: 133 RSDAGTRVAGIN-------------AASLALASAGVAMRGLVSACSVGRVGSFIVVDPNH 179 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D D +M +S I +Q T S++ F L+L + I + ++QK+ + Sbjct: 180 DEDMWGDSDMPLAMMMESEEITLLQADG---TLSEEEFKEALDLGRRAIRFVYEVQKEAL 236 Query: 239 SNE 241 Sbjct: 237 KRP 239 >gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio] gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio] gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio] gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio] Length = 245 Score = 214 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 RL GR+ ++R++ V A+GS ++ G+T L ++ I Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAII 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M ST R +R + S E+ + + + V QI I ++ Sbjct: 73 NCQYSMATFSTAERKRRPHGDRK----SSEMSLHLKQTFEAAVLTELYPRSQIDIYVKIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG +A + A +AL D M D +V A S G + P+ DL + Sbjct: 129 QADGGNYSACVNAATLALVDAGIPMRD-------------YVCACSAGFVEDTPLADLCH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+S + SG+I +Q A QDH ++ A + K+ V+ Sbjct: 176 AEESGGGTALALALLPRSGNIALLQMDAR---LHQDHLDTLMEAAMTACKEFSKVLDSVV 232 Query: 239 SNEV 242 + Sbjct: 233 RQHL 236 >gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum] gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum] Length = 247 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 24/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +R+ GR+ N++R I++ VS A+GS + G+T ++ ++ + ++ + Sbjct: 12 LRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSIFDRAIV 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E+ ST R ++ G + EI ++ +A S + QI I V+ Sbjct: 72 KCEFATSSFSTTERKPQQKTKG--DRATTEISNLVKQAFESTIQTHLYPRSQINIYIQVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q+DGG + AAI + +AL D M K V A+S + G ++DL++ Sbjct: 130 QSDGGLKAAAINASTLALIDAGISM-------------KDFVCAVSTSCIDGVAVLDLNH 176 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+ + D + G ++ + ++ QD F ++L L + + + + Sbjct: 177 IEERSGGPDCLLSIQPQIGGVISLNMDSK---VPQDLFESVLELGEKGCKKIFSI----L 229 Query: 239 SNEV 242 S++V Sbjct: 230 SDQV 233 >gi|291533813|emb|CBL06926.1| ribonuclease PH [Megamonas hypermegale ART12/1] Length = 153 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 75/141 (53%), Positives = 101/141 (71%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R +Q+R +T+ KY GS L++ G+T ++ AT+++ VP ++R + GW+ A Sbjct: 3 RIDRRNADQLRRFKITKYFQKYPAGSVLIETGNTKVICAATIQDGVPSFLRGSGTGWLNA 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY +LP +T R REA GRQ GR+QEIQR+IGR LRSV+D ALG R +IIDCDVIQA Sbjct: 63 EYSLLPSATLTRSPREASRGRQNGRTQEIQRLIGRCLRSVMDFKALGERTVIIDCDVIQA 122 Query: 122 DGGTRTAAITGAWVALHDCLQ 142 DGGTRTA+ITGA+VAL + L Sbjct: 123 DGGTRTASITGAFVALAEALA 143 >gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative [Ixodes scapularis] gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative [Ixodes scapularis] Length = 246 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 99/236 (41%), Gaps = 25/236 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT---KHGW 58 RL GR+ N+ R+I V A+GS ++ G+ +L + P R+ Sbjct: 13 RLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHE-PRGNRSRALHDRVL 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + ++ M ST R +R R +SQE+ I + + + QI I +V Sbjct: 72 VNCQFSMATFSTFERKRRP----RGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q+DGGT + + A +AL D + K +V A S G + G P+VD+ Sbjct: 128 LQSDGGTLSVCVNAATLALIDAGIAL-------------KDYVCACSVGFIDGVPLVDIS 174 Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 E+S + V+ S IV ++ S+ D+ ML+ A DL + Sbjct: 175 SIEESNRGPELTVAVLPKSQQIVLLEMSSR---VHVDNLEKMLDAAMKGCTDLHAI 227 >gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus corporis] gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus corporis] Length = 253 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 23/245 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59 +RL GR+ +++R+I V +GS ++ G+T +L +V + I Sbjct: 10 LRLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAVYGPHQVRGRTKPLLDAAVI 69 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y ST R KR R +SQE + +AL + + QI I +V+ Sbjct: 70 NCQYSSAVFSTEERKKRP----RGDKKSQEKSMHLCQALSAAIKTELYPKSQIDIFVEVL 125 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLD 178 Q+DGG+ +AA+ + +AL D LK +V + + + P+VD+ Sbjct: 126 QSDGGSFSAAVNVSTLALIDAGI-------------PLKEYVTSCTASLANENIPLVDVT 172 Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y E+S + + I ++ S F DH +LN A + ++ + + Sbjct: 173 YLEESCGGPTLTIATLPLAKKIALMEMSQR---FHLDHLEKVLNTAMEGCKNIQVILNEA 229 Query: 238 ISNEV 242 + + Sbjct: 230 VKRHI 234 >gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM 13514] gi|254782535|sp|A4WM67|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1 gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum arsenaticum DSM 13514] Length = 246 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +R GR +QMRE+ ++ V A+GS +V +G T + + P + G + Sbjct: 13 VRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P ST + K R EI +++ AL V L +I + ++I Sbjct: 73 RVRYHMAPFSTKDERKSPT----PSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEII 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADG TR A++T A +AL D +M D + V V + + Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDL-------------NG 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED+ + D M + V +Q + ++ F LNLA + ++ +D + Sbjct: 176 LEDNYGEGDLPVGYMPNLKRFVLLQLDG---AWKREVFLQALNLAVKGAEYVYQIARDAL 232 Query: 239 SNE 241 N+ Sbjct: 233 KNK 235 >gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864] Length = 252 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 95/240 (39%), Gaps = 22/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59 +R+ GR+ N++R I V A+GS ++ G+T +L T +V + I Sbjct: 14 LRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRAII 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY + +T R K R R+ ++ + A V QI I V+ Sbjct: 74 NCEYRVASFATAERKK----PVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q+DGG R I A +AL D M K V A S G + P++D++Y Sbjct: 130 QSDGGNRAVCINAATLALMDAGIAM-------------KDFVCACSVGCIDDTPLLDINY 176 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D V+ S V V+ + D F +L LA D + + + Sbjct: 177 IEDSAGGPDLTVAVLARSRKTVLVEMDSR---LHIDRFDDVLRLAIDGCQAIHSILDSAM 233 >gi|213417938|ref|ZP_03351026.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 148 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 104/149 (69%), Gaps = 2/149 (1%) Query: 38 LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA 97 L TA++EE VP +++ GWITAEYGMLPR+T R REA G+QGGR+ EIQR+I RA Sbjct: 2 LCTASIEEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARA 61 Query: 98 LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157 LR+ VDL LG I +DCDVIQADGGTRTA+ITGA VAL D L + +N + + Sbjct: 62 LRAAVDLKTLGEFTITLDCDVIQADGGTRTASITGACVALADALNKL--VANGKLKTNPM 119 Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTID 186 KG VAA+S G++ G I DL+Y EDS + Sbjct: 120 KGMVAAVSVGIVNGEAICDLEYVEDSAAE 148 >gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis] gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis] gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis] Length = 249 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRSVV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M STG R +R + S E+ + + + + QI I ++ Sbjct: 73 NCQYSMATFSTGERKRRPHGDRK----SSEMTLHLKQTFEAAILTQLYPRSQIDIYVQIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG + A +A+ D M D +V A S G + P+ DL Y Sbjct: 129 QADGGNYCTCVNAATLAVIDAGIPMRD-------------YVCASSAGFIEDTPLADLSY 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + S I ++ ++ +DH +++ A D+ + V+ Sbjct: 176 VEEAAGGPQLALALLPKSDQIALLEMNSR---LHEDHLERVMDAASKACKDVYAVLDQVV 232 Query: 239 SNEV 242 + Sbjct: 233 REHL 236 >gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis KIN4/I] gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis KIN4/I] Length = 241 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWIT 60 R GR +R + + V A+GS ++ G T ++ + P + I Sbjct: 15 RHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDRAVIR 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R + R E+ ++I AL + + I + +VI+ Sbjct: 75 CRYHMAPFSTDERK-----NPAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEVIR 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGTRT +KG VA ++ G + G ++D+D Sbjct: 130 ADGGTRT-------------AALTAASLALADAGIPMKGLVAGVAVGKVQGTLVLDIDEL 176 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED + D + IV +Q + F L LA + I + +QK V++ Sbjct: 177 EDMYGEADMPVAAIPSLNKIVLLQLNG---VLEPREFPQALKLAWEGIKKIHAMQKKVLA 233 Query: 240 NE 241 + Sbjct: 234 EK 235 >gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A] gi|259645399|sp|A0RXU1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1 gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A] Length = 243 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 92/243 (37%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ ++ R + +T V A GS ++FGD +L V P + T+ G + Sbjct: 16 IRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R K R EI ++I AL + L + + +V+ Sbjct: 76 RCRYHMSPFSVSERKK-----PAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG+R ++ V+A + G + ++D++ Sbjct: 131 QADGGSRC-------------AALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNN 177 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D M + + +Q + D + +A D + ++QK + Sbjct: 178 EEDQAGQADMPVGYMPNLDQVTLIQLDG---VLTPDEYSRCAAMAIDGCKQVYEVQKKAL 234 Query: 239 SNE 241 S+ Sbjct: 235 SDR 237 >gi|255644780|gb|ACU22892.1| unknown [Glycine max] Length = 190 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 19/199 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59 +RL GR+ +MR+I A+GS + + G+T ++ +V + + H + Sbjct: 9 LRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG+R+++ + RS EI +I + + + + L QI I V+ Sbjct: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR+A I A +AL D M D V + S G L P++DL+Y Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDLNY 171 Query: 180 GEDSTIDVDANF-VMTDSG 197 EDS D ++ G Sbjct: 172 VEDSAGGPDVTLGILPKLG 190 >gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia SFB1] Length = 245 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 97/243 (39%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R GR+ ++ R I + K A+GS ++FGD +L V P + NT G + Sbjct: 16 IRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGIL 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 Y M P S R + R EI ++I AL V L + + +V+ Sbjct: 76 RVRYHMEPFSVTERK-----NPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVL 130 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR AA++ A VAL D M D VAA + G I+D++ Sbjct: 131 QADGGTRCAALSAASVALADAGIPMRD-------------MVAACAAGKAADTIILDVNN 177 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ED D M I +Q + + + + +LQK + Sbjct: 178 EEDQAGQADMPIGYMPSLEKITLLQLDG---VLTPAEYKKCVETGIHGCKIVYELQKKAL 234 Query: 239 SNE 241 +++ Sbjct: 235 TDK 237 >gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia] Length = 245 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 24/246 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N++R I V K +GS ++ G+T +L + + + + Sbjct: 8 LRLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSNEGVVVN 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y M STG R R + S E+ + +AL + + QI + +V+Q Sbjct: 68 CQYSMATFSTGERKNRPHGDRK----STEMSLHLRQALTAAIKTELYPRSQIDVYVEVLQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPIVDL 177 ADG + A +AL D L+ + A S M P++D+ Sbjct: 124 ADGSCYCVCVNAATLALIDAGI-------------PLRAYACACSASMSWRDDAEPLLDV 170 Query: 178 DYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + E++ V + +G I ++ S D+F +L+ A D+ + Sbjct: 171 GHVEEAAGGVCLTVASLPSTGRIALLEMS---HRLHMDYFDIVLSRAMQGCRDIEVVLDK 227 Query: 237 VISNEV 242 + + Sbjct: 228 AVREHL 233 >gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis] gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis] Length = 249 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 23/243 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ I Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRCVI 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M STG R +R + S E+ + + + + QI I ++ Sbjct: 73 NCQYSMATFSTGERKRRPHGDRK----SSEMTLHLKQTFEAAILTQLYPRSQIDIYVQIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG + A +A+ D M D +V A S G + P+ DL Y Sbjct: 129 QADGGNYCTCVNAATLAVIDAGIPMRD-------------YVCACSAGFIEDTPLADLSY 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++T + S I ++ ++ +DH ++ D+ + V+ Sbjct: 176 VEEATGGPQLALALLPKSDQIALLEMNSR---LHEDHLERVMEAVSKACKDVYTVLDQVV 232 Query: 239 SNE 241 Sbjct: 233 REH 235 >gi|302348936|ref|YP_003816574.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15] gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15] Length = 242 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 23/243 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 RL GR ++MR + + V A+GS +V +G T +L E + + + Sbjct: 15 RLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRASLF 74 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST R S R EI +++ AL VV I + +V+Q Sbjct: 75 VRYHMAPFSTEERK-----SPVPTRREVEISKVLREALEPVVITELFPRTVIEVYVEVLQ 129 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +DGGTRTA+ T A +AL D M VA ++ G + ++DL+ Sbjct: 130 SDGGTRTASATAASLALADAGIPMRAL-------------VAGVAIGKVDNVVVLDLNEP 176 Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D V D G I Q + + + L++A I++L++ +K + Sbjct: 177 EDNFGEADMPVVAAPDLGLITLFQLNG---VMTVEETQKGLDMALKAISELVEKEKQTLR 233 Query: 240 NEV 242 + + Sbjct: 234 SSI 236 >gi|225023880|ref|ZP_03713072.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC 23834] gi|224943354|gb|EEG24563.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC 23834] Length = 167 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 110/158 (69%), Gaps = 2/158 (1%) Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++REA G+Q GR+QEIQR+IGR+LR+ VDLS LG RQI+IDCDVIQADGGTRTA+ITGA Sbjct: 1 MRREAAQGKQSGRTQEIQRLIGRSLRAAVDLSQLGERQILIDCDVIQADGGTRTASITGA 60 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 +VALH + + ++ VAA+S G++ G P++DLDY EDS D D N VM Sbjct: 61 YVALHLAIGKLLAAGKL--AHNPIREAVAAVSLGIVGGVPLLDLDYPEDSGCDSDINLVM 118 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 T SG+I+E+QG+AE FS +L L + I +L+ Sbjct: 119 TASGNIIEIQGTAEGDAFSPAALTQLLALGQKGIVELL 156 >gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum] Length = 244 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 21/242 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+ N++R +++ V A+GS + G+T + + I Sbjct: 12 LRIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTKITVAIYGPHESTTQKSLFDRASIK 71 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 E+ M ST R V R + E +I +A S V QI I V+Q Sbjct: 72 CEFAMSSFSTSERK----VKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIYVQVLQ 127 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +DGG ++AAI +A+ D M D +V A S + G ++DL++ Sbjct: 128 SDGGLKSAAINAVTLAMIDAGIPMRD-------------YVCACSATFIEGSALMDLNHM 174 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + D + G ++ + + Q+ F ++L++A + L ++ + Sbjct: 175 EERSGGADLLLSIHPQLGGVISINM---ESKVPQEMFESVLDMALAGCKKIYYLLQEQVK 231 Query: 240 NE 241 Sbjct: 232 KH 233 >gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens] Length = 246 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 99/240 (41%), Gaps = 22/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59 +RL GR+ +MR + V A+GS L G+T ++ +V + + Sbjct: 11 LRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKALV 70 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG G+ R+ E+ +IG+ L + + L QI I V+ Sbjct: 71 RCEYSMAAFSTGE----RRRRGKTDRRATELSLVIGQTLEAAIMTHLLPRSQIDIYVQVL 126 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR A I A +AL D M D V + + G L P++DL+Y Sbjct: 127 QADGGTRAACINAASMALADAGIPMRDL-------------VVSCAAGYLNSTPLLDLNY 173 Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D + +Q ++ S + F +L LA + + ++ + Sbjct: 174 QEDSGGGPDLVVGYFPKLEKLSLLQMDSK---VSIETFEKVLELATEGAKAVATFTREKL 230 >gi|126322962|ref|XP_001364428.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 [Monodelphis domestica] Length = 245 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK--VPMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L + + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M STG R +R + + E+ + + + + QI I V+ Sbjct: 73 NCQYSMATFSTGERKRRPHGDRK----ACEMGLQLRQTFEAAILTQLYPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG A + A +A+ D M D V A S G + G + DL + Sbjct: 129 QADGGNYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG + ++ A +DH +L +A D+ L V+ Sbjct: 176 VEEAAGGPQLALALLPASGQLALLEMDAR---LHEDHLQQVLEVASQAARDVHALLDRVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|254468299|ref|ZP_05081705.1| ribonuclease PH [beta proteobacterium KB13] gi|207087109|gb|EDZ64392.1| ribonuclease PH [beta proteobacterium KB13] Length = 161 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 2/160 (1%) Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133 ++REA G+Q GR+QEIQR+IGR+LR+++DL+ +G + +DCDV+QADGGTRTA+ITGA Sbjct: 1 MQREAARGKQSGRTQEIQRLIGRSLRAMIDLTKIGENTLQVDCDVLQADGGTRTASITGA 60 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 A+ D +++M K + +AAIS G++ +VDLDY EDS + D N VM Sbjct: 61 ACAIEDAVEYM--LKAKLISESPIIKKIAAISAGIVDSKVLVDLDYDEDSNCETDMNIVM 118 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 T+ +E+QG+AE FSQD +L L+ D I + ++ Sbjct: 119 TEDKQFIEIQGTAEGNPFSQDELNEILTLSSDAIQSIFQI 158 >gi|71981632|ref|NP_001021274.1| EXOSome (multiexonuclease complex) component family member (exos-4.1) [Caenorhabditis elegans] gi|6226696|sp|Q17533|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName: Full=Ribosomal RNA-processing protein 41 gi|3873830|emb|CAA97771.3| C. elegans protein B0564.1a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 240 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 25/235 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR+ Q+R I+ +++ AEGSC ++ G+T +L + R I Sbjct: 9 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIV 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y S R R R +S EI R++ +A SV+ A Q+ I C+VIQ Sbjct: 69 CQYSATKFSGLERKNRT----RGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG A + +AL D M KG +A +CG++ G PIVDL Sbjct: 125 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGVVDGKPIVDLTSR 171 Query: 181 EDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 E++ + A D +VE+Q DH +++ AK AD+ + Sbjct: 172 EETDLLPRVTLATICGRDEVILVELQNR-----LHIDHLSTVMDAAKATCADVYE 221 >gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 236 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 27/244 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R R N++R + V A+GS + G+T + E+V P I G I Sbjct: 5 RFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVDRGVIV 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y MLP S +R R EI ++I AL + L + I + + Q Sbjct: 65 CKYDMLPFSVPDR-----AKPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A++T A +A D M D VAA++ G + + +DL Sbjct: 120 ADAGTRCASLTAASMACADAGLPMRDL-------------VAAVAAGKIGDHVCLDLSKE 166 Query: 181 EDST----IDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 E+ D + I+ +Q S+D ++ + K+ + +L+K Sbjct: 167 EEDFHEGEGATDVPIAFLPSKNEILLLQLDGR---VSRDELKKVIEVGKEGAMKIYELEK 223 Query: 236 DVIS 239 + + Sbjct: 224 EALK 227 >gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4] gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4_'5-way FS'] Length = 235 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 26/243 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60 R R+ +++R + + A+GS K G+T + E+V P I G I Sbjct: 5 RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIV 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y MLP S +R R EI ++I AL V L + + + + Q Sbjct: 65 CKYDMLPFSVPDR-----ARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD GTR A++T A +A D M D VAA++ G + +DL Sbjct: 120 ADAGTRCASLTAASMACADAGLPMRDL-------------VAAVAAGKIGDSICLDLTKE 166 Query: 181 EDST---IDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E+ D + IV +Q + +++ ++ + K ++ +L+K Sbjct: 167 EEDFHEGGATDVPIALLPSKNEIVLLQLDGK---VTREELKKVIEMGKKGAMEIYELEKA 223 Query: 237 VIS 239 + Sbjct: 224 ALK 226 >gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum] Length = 249 Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 27/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59 RL GR+ +Q+R I+ V A+GS ++ G+T +L + R + Sbjct: 9 FRLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLCAVYGPHEPRQRNRTQEDRCTV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M ST R +R R RS E R++ +A + + + QI I C+++ Sbjct: 69 NCQYSMATFSTNERKERP----RGDRRSMEFARLMEKAFETAILVENYPHAQIDIFCELL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLD 178 QADG A + A +AL D M +G VAA SC L G P D+ Sbjct: 125 QADGSHLAACVNAATLALADAGVPM-------------RGLVAAASCACALDGTPCADVS 171 Query: 179 YGEDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 E+S + AN D + E+Q +DH ML A+ + + + Sbjct: 172 AREESNVMPRITIANISGMDEIILTELQNR-----LHRDHLIPMLQCARMAASQVHSCLE 226 Query: 236 DVISNEV 242 +S + Sbjct: 227 VAVSAHI 233 >gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group] gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group] Length = 245 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 52/265 (19%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW---------- 50 R+ GR+ N+MR++ V A+GS L + G+T ++ +V Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVAAHPDYWLVRLIS 69 Query: 51 ---IRNTKHGWITAEYG--------MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR 99 R G + M STG+R ++ + RS EI +I + + Sbjct: 70 KKAKREGLRGRSRTKVSKSTAKMLWMADFSTGDRRRKP----KGDRRSTEISLVIRQTME 125 Query: 100 SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159 + + + QI I V+QADGGTR A I A +AL D M D Sbjct: 126 ASILTHLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDI------------ 173 Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFA 218 V + S DL+Y EDS D +T + +Q A+ D F Sbjct: 174 -VTSCSA---------DLNYIEDSAGGPDVTVGFLTKMDKVTLLQMDAK---LPMDTFET 220 Query: 219 MLNLAKDRIADLIKLQKDV-ISNEV 242 +++LA + + +++ +SN+V Sbjct: 221 VMDLAIEGCKAIANYIRELSLSNDV 245 >gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus] Length = 245 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + G + DL + Sbjct: 129 QADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ + +DH +L A D+ L V+ Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARDVHTLLDRVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 246 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 95/240 (39%), Gaps = 22/240 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 RL GR N++R + + + A GS +++G+ +L E P + +T I Sbjct: 16 RLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIK 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P S+ R R+ EI ++ +VV L +I I +++Q Sbjct: 76 CRYSMAPFSSMGDHGRSG----PNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQ 131 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +DGGTR +K V A+S G + + ++D++ Sbjct: 132 SDGGTRA-------------AGITAAAVALANAGIHVKDMVYAVSAGRIDEHVVIDVNMI 178 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ D D + ++ +Q F+++ F + + + + K+Q+D + Sbjct: 179 EDNYSDADMPVSISPKDNSVLLLQMDG---GFTKEQFGEAMKMILESGKVISKVQRDALK 235 >gi|221101900|ref|XP_002160475.1| PREDICTED: similar to putative exosome complex exonuclease RRP41 [Hydra magnipapillata] Length = 244 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 22/241 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59 +R GR+ +++R+I+ + + A+GS ++ G+T ++ + +V + I Sbjct: 12 LRFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASVYGPHEVSNRSKTLHDSTLI 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 ++ M S R R + +S EI ++ + + + QI I VI Sbjct: 72 NCQFSMATFSMSERKNRP----KGDRKSTEISMLLEKTFATAIMTELYPRSQIDIYVQVI 127 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q+DGG A I A +AL D M K V A + + + D+++ Sbjct: 128 QSDGGVIAACINVATLALIDAGVPM-------------KDFVCACTSSYVQEKNLTDINH 174 Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+S+ M + +V Q S+ D+ +L + K D+ + + + Sbjct: 175 LEESSGSCQLTLAMLPRTAKVVAFQVSSR---LHLDNLEELLKITKQGCLDIYNVLQQAV 231 Query: 239 S 239 Sbjct: 232 E 232 >gi|194215186|ref|XP_001917049.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA-processing protein 41) (Exosome component 4) (p12A) [Equus caballus] Length = 245 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + G + DL + Sbjct: 129 QADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ A +DH +L A D+ L V+ Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTLLDRVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|311253305|ref|XP_003125500.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Sus scrofa] Length = 243 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 21/242 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++R+I V A+GS ++ G+T L + + Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGRAPLPDRALVNC 72 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +Y STG R +R + S E+ + +A + + QI I V+QA Sbjct: 73 QYSSATFSTGERKRRPHGDRK----SCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQA 128 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGG A + A +A+ D M D V A S G + G + DL + E Sbjct: 129 DGGIYAACVNVATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSHVE 175 Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ + SG I ++ A +DH +L A D+ + V+ Sbjct: 176 EAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTVLDRVVRQ 232 Query: 241 EV 242 V Sbjct: 233 HV 234 >gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex exonuclease RRP41-like [Callithrix jacchus] Length = 245 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + G + DL + Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ A +DH +L A D+ L V+ Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAAQDVHILLDRVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus] Length = 271 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 39 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 98 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 99 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 154 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + G + DL + Sbjct: 155 QADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTALADLSH 201 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ + +DH +L A + L V+ Sbjct: 202 VEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARGVHTLLDLVV 258 Query: 239 SNEV 242 V Sbjct: 259 RQHV 262 >gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine microorganism HF4000_APKG2H5] Length = 238 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 23/241 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R+ GR+ +R IS+ V A GS V++G H++ E P I + Sbjct: 16 RMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLD 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M P ST +R++ RS+EI ++ AL SVV L +I ++ +++ Sbjct: 76 VRYNMAPFSTTDRIRPGF-----NRRSREISKVTSDALESVVLLEMYPRSKIRVEIEILC 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 A+ GTR +T A VAL M V +++ G + G I DL+ Sbjct: 131 AEAGTRCVGLTAASVALAHAGIPM-------------TDMVVSVASGKINGVVICDLNKE 177 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ED+ + D M +SG +V +Q + S D F + + + ++ + Sbjct: 178 EDNYGEADLPMGMLPNSGDLVFLQMDGD---LSPDEFQQAWDYNMEAGLAVHEIMVQALK 234 Query: 240 N 240 Sbjct: 235 G 235 >gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus] gi|21759405|sp|Q921I9|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName: Full=Exosome component 4; AltName: Full=Ribosomal RNA-processing protein 41 gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus] gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus] gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus] gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus] Length = 245 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + G + DL + Sbjct: 129 QADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ + +DH +L A + L V+ Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARGVHTLLDLVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei] gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei] Length = 372 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 64/251 (25%), Positives = 100/251 (39%), Gaps = 41/251 (16%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR+ Q+R I+ +++ AEGSC ++ G+T +L + R I Sbjct: 125 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIV 184 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y S R R R +S EI R++ +A SV+ + QI I C+VIQ Sbjct: 185 CQYSTTTFSGLERKNRP----RGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQ 240 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG A + +AL D M KG +A +CG++ PIVDL Sbjct: 241 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGIVDAKPIVDLTSR 287 Query: 181 EDSTIDVD-------------------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 E++ + A D +VE+Q DH +++ Sbjct: 288 EETDLLPRVTVSGFSSIILLLHSKFQLATICGRDEVILVELQNR-----LHIDHLSVVMD 342 Query: 222 LAKDRIADLIK 232 AK AD+ + Sbjct: 343 AAKATCADVYE 353 >gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae] gi|206557764|sp|A8WQQ5|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41 gi|309371508|emb|CBG92366.1| CBR-EXOS-4.1 protein [Caenorhabditis briggsae AF16] Length = 240 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 25/235 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR+ Q+R I+ +++ AEGSC ++ G+T +L + R I Sbjct: 9 FRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIV 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y S R R R +S EI R++ +A SV+ + QI I C+VIQ Sbjct: 69 CQYSTTTFSGLERKNRP----RGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG A + +AL D M KG +A +CG++ PIVDL Sbjct: 125 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGIVETKPIVDLTSR 171 Query: 181 EDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 E++ + A D +VE+Q DH +++ AK AD+ + Sbjct: 172 EETDLLPRVTLATICGRDEVILVELQNR-----LHIDHLSVVMDAAKATCADVYE 221 >gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens] gi|109087712|ref|XP_001089090.1| PREDICTED: exosome complex exonuclease RRP41 [Macaca mulatta] gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 [Pan troglodytes] gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex exonuclease RRP41-like [Nomascus leucogenys] gi|14285756|sp|Q9NPD3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName: Full=Exosome component 4; AltName: Full=Ribosomal RNA-processing protein 41; AltName: Full=p12A gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens] gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens] gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens] gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens] gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct] gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct] Length = 245 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + G + DL + Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ A +DH +L A D+ L V+ Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHTLLDRVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus] Length = 245 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y ST R +R + S E+ + + + + QI I V+ Sbjct: 73 NCQYSSATFSTAERKRRPHGDRK----SCELGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + G + DL + Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALTDLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+++ + SG I ++ A +DH +L A + L V+ Sbjct: 176 VEEASGSPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARGVHTLLDRVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Ailuropoda melanoleuca] Length = 245 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + + DL + Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDSTALADLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ A +DH +L A D+ L V+ Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTLLDHVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 249 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 17 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 76 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 77 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 132 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + G + DL + Sbjct: 133 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 179 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ A +DH +L A D+ L V+ Sbjct: 180 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHTLLDRVV 236 Query: 239 SNEV 242 V Sbjct: 237 RQHV 240 >gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator] Length = 271 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 106/254 (41%), Gaps = 20/254 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59 +R+ GR+ ++R+I + V A+GS ++ G+T +L + I +NT + Sbjct: 13 LRVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPRNNIAKNTTKAIV 72 Query: 60 TAEYGMLPRS--TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y M S +G R +R R +SQE + A+ +++ L QI I + Sbjct: 73 NCQYSMAVFSFTSGERKRRP----RGDWKSQERSIQLRHAMEAIIHLELYPRSQIDIFVE 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ++Q DG A++ A +AL D +++ + ++ + + G ++D Sbjct: 129 ILQVDGSDYCASVNAATLALIDAGIPIKNYAVGCTVALINTPSTDEQDKTLAGG--VLDA 186 Query: 178 DYGEDSTIDVDANFVM---------TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 ++ E+ + V + V ++G IV G+ +R H A+ A Sbjct: 187 NFVEEYSPGVTLSVVALPGTSEVESNENGLIVVAHGTGQR--LHLSHLEALKQRALQGCK 244 Query: 229 DLIKLQKDVISNEV 242 D+ + + + Sbjct: 245 DIRTIMDQSVRQHL 258 >gi|57095694|ref|XP_539207.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 1 [Canis familiaris] Length = 245 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + + DL + Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDNTALADLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ A +DH +L A D+ + V+ Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae] gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae] Length = 249 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 93/243 (38%), Gaps = 20/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + + I Sbjct: 13 LRLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTESNDVIIN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +SQE + + +AL + + QI + +V+Q Sbjct: 73 CQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG A+ A +AL D + + VA + P+ D+ + Sbjct: 129 ADGANYAVALNAATLALIDAGICLNELI------------VACTASLSKNNIPLTDISHI 176 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + + + I ++ S F DH ++ A ++ + + V+ Sbjct: 177 EEVSGGPKLTVAALPTAQKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAVVK 233 Query: 240 NEV 242 + Sbjct: 234 EHL 236 >gi|75045923|sp|Q7YRA3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName: Full=Exosome component 4; AltName: Full=Ribosomal RNA-processing protein 41 gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus] gi|296480766|gb|DAA22881.1| exosome complex exonuclease RRP41 [Bos taurus] Length = 245 Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + G + DL + Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ A +DH +L A D+ + V+ Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARASRDVHTVLDRVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex exonuclease RRP41-like [Pongo abelii] Length = 343 Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 111 RVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 170 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 171 NCQYSSATFSTGERKRRRHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 226 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + G + DL + Sbjct: 227 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 273 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ A +DH +L A D+ L V+ Sbjct: 274 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHTLLDRVV 330 Query: 239 SNEV 242 V Sbjct: 331 RQHV 334 >gi|73974737|ref|XP_857538.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 5 [Canis familiaris] Length = 238 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 90/242 (37%), Gaps = 26/242 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++R+I V A+GS ++ G+T L + + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGH-----RALVNC 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +Y STG R +R + S E+ + + + + QI I V+QA Sbjct: 68 QYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQA 123 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGT A + A +A+ D M D V A S G + + DL + E Sbjct: 124 DGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDNTALADLSHVE 170 Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ + SG I ++ A +DH +L A D+ + V+ Sbjct: 171 EAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVVRQ 227 Query: 241 EV 242 V Sbjct: 228 HV 229 >gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Ailuropoda melanoleuca] Length = 240 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 24/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++R+I V A+GS ++ G+T L + + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAKGRR---DRALVNC 69 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +Y STG R +R + S E+ + + + + QI I V+QA Sbjct: 70 QYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 125 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGGT A + A +A+ D M D V A S G + + DL + E Sbjct: 126 DGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDSTALADLSHVE 172 Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ + SG I ++ A +DH +L A D+ L V+ Sbjct: 173 EAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTLLDHVVRQ 229 Query: 241 EV 242 V Sbjct: 230 HV 231 >gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Sus scrofa] Length = 245 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + +A + + QI I V+ Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG A + A +A+ D M D V A S G + G + DL + Sbjct: 129 QADGGIYAACVNVATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ A +DH +L A D+ + V+ Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTVLDRVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium dendrobatidis JAM81] Length = 253 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 22/242 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59 +R+ GR+ ++R + + A+GS ++ G+T + ++ + I Sbjct: 24 LRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAVYGPKESKIQSAQLHDRAVI 83 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY + S+G R + ++ R EI +I R VV S +I I ++ Sbjct: 84 NVEYNVASFSSGERK----LKMKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQIL 139 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q DGG AAI +A+ D M D +V A S G G ++DL+Y Sbjct: 140 QLDGGALHAAINATCLAMIDAGIPMSD-------------YVIACSAGFSNGSALLDLNY 186 Query: 180 GEDST-IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+S + V ++ SG + + + +HF +LNLA + L + + + Sbjct: 187 IEESAELPVLTAALLPKSGKLTMLSM---ESRLHLNHFQDVLNLATEGCNTLAESLNETV 243 Query: 239 SN 240 Sbjct: 244 RK 245 >gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi] Length = 246 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 28/249 (11%) Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54 +RL GR+ +++R + A+GS ++ G+T +L + P N Sbjct: 9 LRLDGRKSDELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAVYGPRE-PRGGSSGDNSNK 67 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + + ++ ST R +R+ R RS E+ + + + + QI I Sbjct: 68 EEAILNVQFSSAAFSTAERKQRQ----RGDKRSLEMAAHLKQTFAACIQTELYPRSQIDI 123 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 +V+Q DGG A++ A +AL L+ +V A S ++ P+ Sbjct: 124 FVEVLQTDGGHYCASVNAATLALIHAGI-------------PLRDYVCACSASLIKETPL 170 Query: 175 VDLDYGEDSTIDVDA-NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D+ E + + + SG IV ++ S F DH +++ A + + + Sbjct: 171 LDISMLESNLGGPELILAALPKSGEIVLLEMSQR---FHMDHLEKVIDEALEGTRKIRDI 227 Query: 234 QKDVISNEV 242 +V+ + + Sbjct: 228 LDEVVRDHL 236 >gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis] gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis] Length = 249 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 22/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + I Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLVIN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +SQE + + +AL + + QI I +V+Q Sbjct: 73 CQYSQATFSTSERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179 ADG ++ A +AL D + + V A + + P+ D+ + Sbjct: 129 ADGANYAVSLNAATLALIDAGICLNE-------------FVVACTASLSNANIPLTDISH 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+ + + + I ++ S F D ++ A ++ + + + Sbjct: 176 IEEVSGGPKLTIAALPTAEKIAFMEMS---ERFHIDQLETVIETAMAGCREIRDILESAV 232 Query: 239 SNEV 242 + Sbjct: 233 KEHL 236 >gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4] gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4] Length = 247 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 99/235 (42%), Gaps = 20/235 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +R+ GR+ N++R I++ + K A+GS + G+T ++ ++ + + + Sbjct: 12 LRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAVV 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E+ ST R ++ G + EI ++ +A S + QI I V+ Sbjct: 72 KCEFSSSSFSTTERKPQQKTKG--DRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q+DGG + AAI + +AL D M K + A S + G ++DL+ Sbjct: 130 QSDGGLKAAAINASTLALIDAGISM-------------KDFICACSTSCIDGIAVLDLNN 176 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 E+ + D + G ++ + ++ QD F ++L L + + + Sbjct: 177 IEERSGGPDCLLSIQPQIGGVISLNMDSK---VPQDLFESVLELGEKGCKKIFSI 228 >gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469] Length = 208 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 23/220 (10%) Query: 24 AEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGR 82 A+GS +++G ++ + P ++ + A Y M P S R + Sbjct: 1 ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDERKR-----PG 55 Query: 83 QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142 R+ E+ ++I AL SV+ + I + +V+QAD GTR A IT A +AL D Sbjct: 56 PDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGI 115 Query: 143 HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVE 201 M D + + G + ++DL+ ED+ D +M + I Sbjct: 116 PMRDL-------------IVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAIMPRTKEIAL 162 Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 +Q + S + +++A D + ++Q + + + Sbjct: 163 LQMDGD---MSYEELTTAMDMAMDAAEKIHEMQVEALKRK 199 >gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus] gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus] Length = 245 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRPLV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y STG R +R + S E+ + + + + QI I V+ Sbjct: 73 NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGT A + A +A+ D M D V A S G + G + DL + Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I ++ A +DH +L A D+ + V+ Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARASRDVHTVLDRVV 232 Query: 239 SNEV 242 V Sbjct: 233 RQHV 236 >gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi] gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi] Length = 249 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 22/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + I Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKAKKSEGNDLIIN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +SQE + + +AL + + QI I +V+Q Sbjct: 73 CQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179 ADG ++ A +AL D + + V A + + P+ D+ + Sbjct: 129 ADGANYAVSLNAATLALIDAGICLNE-------------FVVACTASLSKSNIPLTDISH 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+ + + + I ++ S F D ++ A ++ + + + Sbjct: 176 IEEVSGGPKLTIAALPTAEKIAFMEMS---ERFHIDQLETVIETAMAGCREIRDILEAAV 232 Query: 239 SNEV 242 + Sbjct: 233 KEHL 236 >gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis] gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis] Length = 249 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 22/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + I Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLIIN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +SQE + + +AL + + QI I +V+Q Sbjct: 73 CQYSQATFSTSERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179 ADG ++ A +AL D + + V A + + P+ D+ + Sbjct: 129 ADGANYAVSLNAATLALIDAGICLNE-------------FVVACTASLSKSNIPLTDISH 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+ + + + I ++ S F D ++ A ++ + + + Sbjct: 176 IEEVSGGPKLTIAALPTAEKIAFMEMS---ERFHIDQLETVIETAMAGCREIRDILESAV 232 Query: 239 SNEV 242 + Sbjct: 233 KEHL 236 >gi|73974735|ref|XP_857497.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 4 [Canis familiaris] Length = 244 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 22/243 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWIT 60 R+ GR+ ++R+I V A+GS ++ G+T L + + + Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEARGVRTLTQRKALVN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y STG R +R + S E+ + + + + QI I V+Q Sbjct: 73 CQYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGGT A + A +A+ D M D V A S G + + DL + Sbjct: 129 ADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDNTALADLSHV 175 Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E++ + SG I ++ A +DH +L A D+ + V+ Sbjct: 176 EEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVVR 232 Query: 240 NEV 242 V Sbjct: 233 QHV 235 >gi|149430580|ref|XP_001515504.1| PREDICTED: similar to Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 [Ornithorhynchus anatinus] Length = 245 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 23/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59 R+ GR+ ++R+I V A+GS ++ G+T L ++ + Sbjct: 13 RVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGLRSRALPDRALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 ++ M STG R +R + + E+ + + + + QI I ++ Sbjct: 73 NCQFSMATFSTGERKRRPHGDRK----ATEMSQHLQQTFEDAILTQLYPRSQIDIYVQIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG A + A +A+ D L+ V A S G + P+ DL Y Sbjct: 129 QADGGNYAACVNAATLAVLDAGI-------------PLRDFVCASSAGFVEDTPLADLSY 175 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + SG I + A +DH +L A D+ + V+ Sbjct: 176 VEEAAGGPQVALALLPGSGQITLLGLDAR---VHEDHLERVLEAATAAARDVHTVLDRVV 232 Query: 239 SNEV 242 V Sbjct: 233 RRHV 236 >gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior] Length = 272 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 97/210 (46%), Gaps = 10/210 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59 +R+ GR+ ++R+I + V A+GS ++ G+T +L + RN+ I Sbjct: 12 LRIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAVYGPRQSRSSASRNSTKAII 71 Query: 60 TAEYGMLPRS--TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y M S +G R +R R +SQE + A+ +++ L QI + + Sbjct: 72 NCQYSMAVFSFTSGERKRRP----RGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFVE 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+Q DG A++ A +AL D +++ + ++ V K V + G ++D Sbjct: 128 VLQVDGSDYCASVNAATLALIDAGIPIKNYAIGCSVTLVNKPSVEDEDKTLATG--VLDA 185 Query: 178 DYGEDSTIDVDANFV-MTDSGHIVEVQGSA 206 +Y E+ + V + V + + + +EV G+ Sbjct: 186 NYVEECSPGVTLSVVALAGTNNDIEVDGNG 215 >gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii] gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii] Length = 264 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 22/224 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +MR++ V + A GS + + G+T ++ +V + + Sbjct: 9 LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG+ G+ RS EI +I + L + + + + QI I V+ Sbjct: 69 RCEYSMAAFSTGD----RRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR+A I A +AL + M D VA+ + G L G P++DL+Y Sbjct: 125 QADGGTRSACINAAALALAEAGIPMRDL-------------VASCAAGYLNGTPLLDLNY 171 Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNL 222 EDS D + + +Q ++ +HF + L Sbjct: 172 VEDSGGGPDVTVALFPKVDKVSLLQMDSK---MPLEHFENVFQL 212 >gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii] gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii] Length = 242 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 22/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ +MR++ V + A GS + + G+T ++ +V + + Sbjct: 9 LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG+ G+ RS EI +I + L + + + + QI I V+ Sbjct: 69 RCEYSMAAFSTGD----RRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR+A I A +AL + M D VA+ + G L G P++DL+Y Sbjct: 125 QADGGTRSACINAAALALAEAGIPMRDL-------------VASCAAGYLNGTPLLDLNY 171 Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D + + +Q ++ +HF + LA + + ++V+ Sbjct: 172 VEDSGGGPDVTVALFPKVDKVSLLQMDSK---LPLEHFENVFQLAAEGAKAAARYMREVL 228 >gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura] gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis] gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura] gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis] Length = 249 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 20/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + T I Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGMKTETNDVIIN 72 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y +T R R R +S E + + +AL + + QI I +V+Q Sbjct: 73 CQYSQATFATAERKNRP----RGDRKSLEFKMYLEQALSAAIKSELYPRSQIDIYVEVLQ 128 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG A+ A +AL D + + VA + P+ D+ + Sbjct: 129 ADGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSSIPLTDISHT 176 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + + ++ I ++ S F DH ++ A ++ + + + Sbjct: 177 EEVSGGPMLTVAALPNAQKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVR 233 Query: 240 NEV 242 + Sbjct: 234 EHL 236 >gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni] gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni] Length = 251 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 94/245 (38%), Gaps = 22/245 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--W 58 +RL GR+ +++R I V + +GS ++ G+T +L + ++++ Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKNKSSESNDVI 72 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I +Y ST R R R +SQE + + +AL + + QI + +V Sbjct: 73 INCQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEV 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +QADG A+ A +AL D + + VA + P+ D+ Sbjct: 129 LQADGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDIS 176 Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 E+ + + S I ++ S F DH ++ A ++ + + Sbjct: 177 QVEEISGGPKLTVAALPTSEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAA 233 Query: 238 ISNEV 242 + + Sbjct: 234 VKEHL 238 >gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus] Length = 274 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 105/245 (42%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59 +R GR+ ++R+I L V A+GS ++ G+T +L + I RN+ ++ Sbjct: 13 LRSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPKSNISRNSTKAFV 72 Query: 60 TAEYGMLPRS--TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y M S +G R +R R +SQE + A+ +++ L QI I + Sbjct: 73 NCQYSMAVFSFTSGERKRRP----RGDWKSQERSAQLRHAMEAIIHLELYPRSQIDIFVE 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV-AAISCGMLCGYPIVD 176 V+Q DG A++ + +AL D +++ + +S + K + G ++D Sbjct: 129 VLQVDGSDYCASVNASTLALIDAGIPIKNYAVGCTVSLINKLTTEEEEDKTLATG--VLD 186 Query: 177 LDYGEDSTIDVDANFV-MTDSGHIVEVQGSAE-------RATFSQDHFFAMLNLAKDRIA 228 ++ E+ + V + V + ++ + VEV GS A+ A Sbjct: 187 ANFVEECSPGVTLSVVALPETNNEVEVDGSGLIVVAHGAGQRLHLSRLEALKKRALQGCQ 246 Query: 229 DLIKL 233 D+ ++ Sbjct: 247 DIKEI 251 >gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f. nagariensis] gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f. nagariensis] Length = 245 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59 +RL GR+ ++R I+ V A+GS + + G+T +L V + Sbjct: 9 LRLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAAIV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG G+ RS E+ +I L + + QI + V+ Sbjct: 69 VCEYSMAAFSTGE----RRRRGKGDRRSTELSMVIRNTLEQAILRELMPRSQIDVYVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR L+ VA+ + G L G P++DL++ Sbjct: 125 QADGGTRC-------------AAINAAVLALAAAGVPLRDLVASCAAGYLDGTPLLDLNF 171 Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D + G +V VQ D F A+L+LA+D + + + + Sbjct: 172 TEDSGGGPDLAVALAPREGLLVLVQMDNR---LPVDTFQAVLDLARDGCRTISGVMRAAL 228 Query: 239 SNE 241 Sbjct: 229 LEH 231 >gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta] gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta] Length = 246 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQA---KSKHTESIIN 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +S E + + +AL + + QI I +V+Q Sbjct: 70 CQYSQATFSTAERKYRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG A+ A +AL D + + VA + P+ D+ + Sbjct: 126 ADGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDISHF 173 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + + + I ++ S F DH ++ A ++ + + + Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230 Query: 240 NEV 242 + Sbjct: 231 EHL 233 >gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba] gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba] Length = 246 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKG---KQTESIIN 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +S E + + +AL + + QI I +V+Q Sbjct: 70 CQYSQATFSTAERKNRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG A+ A +AL D + + VA + P+ D+ + Sbjct: 126 ADGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDISHF 173 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + + + I ++ S F DH ++ A ++ + + + Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230 Query: 240 NEV 242 + Sbjct: 231 EHL 233 >gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas reinhardtii] gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas reinhardtii] Length = 245 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 91/243 (37%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59 +RL GR+ ++R I+ V A+GS + + G+T +L V + G + Sbjct: 9 LRLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGALV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG G+ RS E+ +I L V L QI + V+ Sbjct: 69 VCEYSMAAFSTGE----RRRRGKGDRRSTELSMVIRNTLEQAVITELLPRSQIDVYVQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR L+ VA + G L G ++DL+Y Sbjct: 125 QADGGTRC-------------AAINAAVLALAAAGVPLRDLVAGCAAGYLDGTALLDLNY 171 Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 EDS D + + VQ D F A++ LA++ + + + + Sbjct: 172 TEDSGGGPDLCVALAPRLDSLYLVQMDNR---LPVDTFQAVMELAREGCRTISGVMRAAL 228 Query: 239 SNE 241 Sbjct: 229 LEH 231 >gi|24584046|ref|NP_609618.2| Ski6 [Drosophila melanogaster] gi|7298022|gb|AAF53263.1| Ski6 [Drosophila melanogaster] gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster] Length = 246 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + N I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKG---NQTESVIN 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +S E + + +AL + + QI I +V+Q Sbjct: 70 CQYSQATFSTAERKNRP----RGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG A+ A +AL D + + VA + P+ D+ Sbjct: 126 DDGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDISQF 173 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + + + I ++ S F DH ++ A ++ + + + Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230 Query: 240 NEV 242 + Sbjct: 231 EHL 233 >gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia] gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia] Length = 246 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + N I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKG---NQTESVIN 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +S E + + +AL + + QI I +V+Q Sbjct: 70 CQYSQATFSTAERKNRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG A+ A +AL D + + VA + P+ D+ Sbjct: 126 DDGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDISQF 173 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + + + I ++ S F DH ++ A ++ + + + Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230 Query: 240 NEV 242 + Sbjct: 231 EHL 233 >gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis mellifera] Length = 284 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 102/253 (40%), Gaps = 21/253 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKH 56 +RL GR+ ++R+I + V A+GS ++ G+T +L T + Sbjct: 29 LRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKITK 88 Query: 57 GWITAEYGMLPR--STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 G + +Y M S+G R ++ R +SQE + A+ +++ L QI I Sbjct: 89 GIVNCQYSMAVFSLSSGERKRKP----RGDRKSQERSLQLKHAMEAIIHLELYPRSQIDI 144 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 + +Q DG A++ A +AL D +++ + ++ + + + G + Sbjct: 145 YVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLEKG--V 202 Query: 175 VDLDYGEDSTIDVDANFV-------MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 +D +Y E+ V + V ++ G IV QG+ +R SQ L Sbjct: 203 LDANYVEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLC--GC 260 Query: 228 ADLIKLQKDVISN 240 D+ + + Sbjct: 261 QDIKTILDHAVRQ 273 >gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster] Length = 246 Score = 187 bits (477), Expect = 8e-46, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ +++R I V + +GS ++ G+T +L + N I Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKG---NQTESVIN 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y ST R R R +S E + + +AL + + QI I +V+Q Sbjct: 70 CQYSQATFSTAERKNRP----RGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG A+ A +AL D + + VA + P+ D+ Sbjct: 126 DDGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDISQF 173 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + + + I ++ S F DH ++ A ++ + + + Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLGTVIETAMAGCREIRDILEAAVK 230 Query: 240 NEV 242 + Sbjct: 231 EHL 233 >gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens] gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens] Length = 243 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 24/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R+ GR+ ++R + V A+GS ++ G+T L + + I Sbjct: 9 LRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASINGPHQAGDKAKIKHDRVHI 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M ST R R + RS +I +++ +S + QI I ++ Sbjct: 69 NFQYSMATFSTNERRNRP----KGDKRSIDISQLMREIFQSAILTDLYPKSQIDIHVQIL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG +A I A +AL D M K + + + ++ I+D++ Sbjct: 125 QADGGNYSACINAATLALMDAGVPM-------------KDFICSCTASLVDSKTIIDVNN 171 Query: 180 GED-STIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ-KD 236 E+ + ++ S I+ Q ++ DH +L D+ ++ ++ Sbjct: 172 SEELHFSNPLLTLAILPTSEEIILCQM---KSRLHADHLEDILKAGIKGCKDIYEIMHRE 228 Query: 237 VIS 239 V++ Sbjct: 229 VLN 231 >gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa] gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa] Length = 247 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 27/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60 R GR+ Q+R ++ V A+GS ++ G+T +L E I Sbjct: 10 RQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIIN 69 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y M ST R +R R RS E R++ +A + V QI + C+++Q Sbjct: 70 CQYSMATFSTNERKERP----RGDRRSLEFARLMEKAFEAAVLTENYPRSQIDVFCELLQ 125 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179 ADG A + +AL D M +G VAA SC G VD++ Sbjct: 126 ADGSHLAACVNVGTLALADAGVPM-------------RGLVAAASCACAPNGVACVDVNS 172 Query: 180 GEDSTIDVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E+ I D+ + E+Q +++ +L A+ A + + Sbjct: 173 REEMGIIPRLTVATISGQDAVVLAELQNR-----LHKNYLIVILEAARRATAHVHSCLEA 227 Query: 237 VISNEV 242 + + Sbjct: 228 AVLTHI 233 >gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis] Length = 247 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 93/245 (37%), Gaps = 24/245 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT---KHGW 58 R GR+ +++R + V A+GS ++ G+T +L + +R+ + Sbjct: 13 RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCF 72 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I E+ S+ R KR R + +++ I + + V QI I V Sbjct: 73 INCEFSQAMFSSAERKKR----SRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQV 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + +DG A + A +AL D M K +V A S + ++D++ Sbjct: 129 LHSDGSLYCACVNAATLALIDAGIAM-------------KDYVCACSASLTKETSLIDIN 175 Query: 179 YGEDSTIDVDAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + E+ + + +M I+ + + QD +++ + D+ + Sbjct: 176 HVEELAGCAEFSAAIMPKLDQIIYSELNGR---IHQDELGQLVDAVTNGCKDIFAVIDRF 232 Query: 238 ISNEV 242 + + + Sbjct: 233 VRSRL 237 >gi|47220383|emb|CAF98482.1| unnamed protein product [Tetraodon nigroviridis] Length = 291 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 56/290 (19%), Positives = 93/290 (32%), Gaps = 69/290 (23%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-------------- 47 R+ GR+ ++R+I V A+GS ++ G+T L +V Sbjct: 13 RIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCVCVCVCVCQ 72 Query: 48 ---PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104 I +Y M ST R +R + S E+ + + + V Sbjct: 73 MRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRK----STEMSLHLKQTFEAAVMT 128 Query: 105 SALGSRQIIIDCDV-------------------------------IQADGGTRTAAITGA 133 QI I V +Q+DGG + + A Sbjct: 129 QLFPRSQIDIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSVCVNAA 188 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV- 192 +A+ D M D +V A + G + P+ DL Y E+S Sbjct: 189 TLAVIDAGIPMRD-------------YVCACTVGFVDETPLADLCYAEESGGVSSLGLAL 235 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 + G I VQ A QD+ A++ A + K+ +V+ + Sbjct: 236 LPRGGQIALVQMDAR---LHQDNLDALMEAAMTACKGVSKVLDEVVRQHL 282 >gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi] gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia malayi] Length = 249 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 21/244 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59 R GR+ +Q+R ++ V A+GS ++ G+T +L E I Sbjct: 9 FRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCII 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y M ST R +R R RS E R++ +A + QI + C+++ Sbjct: 69 NCQYSMATFSTNERKERP----RGDRRSLEFARLMEKAFEEAILTENYPRSQIDVFCELL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLD 178 QADG A + +AL D M +G VAA SC G VD++ Sbjct: 125 QADGSHLAACVNVGTLALADAGVPM-------------RGLVAAASCACAPGGLACVDVN 171 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+ I V T SG V + + ++H +L A+ A + + + Sbjct: 172 SREEMGIVPRLT-VATISGQ-DAVVMAELQNRLHKNHLMVILGNARKATAHVHSCLEAAV 229 Query: 239 SNEV 242 + Sbjct: 230 LTHI 233 >gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500] Length = 248 Score = 184 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 29/252 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +R+ GR+ N++R +++ + A+GS + G+T + +V + Sbjct: 12 LRIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQRMLHDRAIV 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY S+ K + + +S EI +I +A S + ++ QI I V+ Sbjct: 72 NCEYSQAAFSSATDRK---PTRKSDKQSYEIASLIKQAFESTIQITLFPRSQIDIYVQVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG + AA+ A +A+ D M D + A S + G P++D++ Sbjct: 129 QADGGLKAAALNAATLAVIDAGLPMRD-------------FICACSATFIEGVPLLDMNQ 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKDV 237 E+ + D + G ++ + + QD F ++L LA + LQ +V Sbjct: 176 MEERSGGADLLLSIQPQLGGVISLNM---ESKVPQDMFESVLELANLGCMKIFALLQTEV 232 Query: 238 -------ISNEV 242 +SN++ Sbjct: 233 KRHSADLLSNQI 244 >gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1] gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1] Length = 276 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 23/255 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N+ R +S+T +K A+GS LVK GDT +L +E + P + G + Sbjct: 27 IRADGRKFNEYRPLSITLSYAKKADGSALVKLGDTTVLAGVKVEPEEP-FEDTPNQGNLV 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112 +LP + G + E+ R++ R+LR +DLS L G + + Sbjct: 86 VNVELLPLAYET-----FEPGPPDENAIELSRVVDRSLRDSKSIDLSKLVIEPGKKIWTV 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAI 164 +D V+ G A A AL+D L + ++ ++ + + V + Sbjct: 141 WVDIYVLDYGGNILDACTLAAVSALYDTRLPKVVKEGDEIKIIKEEKGEKLPMNFPVVTV 200 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 S + + +VD D E+ +D + T G IV +Q + TF+ + LA+ Sbjct: 201 SVAKIGKHLVVDPDLDEEGIMDAKISLSYTPEGRIVGIQKTG-IGTFTLTEIDNVETLAR 259 Query: 225 DRIADLIKLQKDVIS 239 L++ K I+ Sbjct: 260 SVSQKLLEELKKQIN 274 >gi|146302863|ref|YP_001190179.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera sedula DSM 5348] gi|145701113|gb|ABP94255.1| ribosomal RNA-processing protein RRP42 [Metallosphaera sedula DSM 5348] Length = 280 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 66/254 (25%), Positives = 104/254 (40%), Gaps = 23/254 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ R +S+T +K A+GS LVK GDT +L +EE P + G + Sbjct: 28 RSDGRKFTDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKVEEDEP-YPDTPNQGNLVV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 +LP + G + E+ R++ R+LR VDLS L G + + Sbjct: 87 NAELLPLAYET-----FEPGPPDENAIELSRVVDRSLRDSKAVDLSGLVIEPGKKVWTVW 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAIS 165 +D V+ G A A AL+D + + +K V +S Sbjct: 142 VDISVLDYGGNVLDACTIAAVAALYDAKLPKVVRENDNIIIQKEEKVTPLPIKYPVVTVS 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + + +VD D E+ +D +F SG+IV +Q S E +FSQ +A Sbjct: 202 VAKIGKFLVVDPDLEEEGIMDAKISFSYIPSGNIVGIQKSGE-GSFSQQEVEVAEGMASA 260 Query: 226 RIADLIKLQKDVIS 239 L++ K +I Sbjct: 261 TSQKLLEELKSLIG 274 >gi|70606424|ref|YP_255294.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus acidocaldarius DSM 639] gi|68567072|gb|AAY80001.1| exosome complex exonuclease RRP43-like protein [Sulfolobus acidocaldarius DSM 639] Length = 276 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 23/255 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N+ R++ +T +K AEGS LVK G+T +L LEE P + G + Sbjct: 27 VRLDGRKPNEYRQLKVTLGYAKKAEGSALVKLGNTLVLAGVKLEEDSP-YPDTPNQGNLI 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112 +LP + G S E+ R++ R+LR +DLS L G + + Sbjct: 86 VNVELLPLAYET-----FEPGPPDENSIELARIVDRSLRDSKAIDLSKLVIAPGKKVWTL 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVLKGHVAAI 164 +D V+ DG A + + A++D + ++ V + Sbjct: 141 WVDVYVLDYDGNILDACMLASIAAIYDTKLPKVEVEGDEIKINKEERLSIPLVNYPVVTV 200 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + + Y +VD + E+S D + T G IV +Q + + AM + A+ Sbjct: 201 TTAKIGKYVVVDPNLDEESIADAKLSISYTKEGTIVGLQKNY-SGNLTFKEIDAMESTAR 259 Query: 225 DRIADLIKLQKDVIS 239 L + K I+ Sbjct: 260 ATSQFLFEELKKQIN 274 >gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon pisum] Length = 249 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 25/245 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58 +R GR+ ++R I V +GS ++ G+T ++ ++ Sbjct: 9 LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAV 68 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I +Y M S R +R + +S E+ + +A+ + + QI I V Sbjct: 69 INCQYSMATFSRSERKRRP-----RDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQV 123 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDL 177 +Q+DGG + + A +AL D ME+ V + + + G P+VD+ Sbjct: 124 LQSDGGNYSVCVNAATLALIDAGIAMEE-------------FVISCTSSLANGETPLVDI 170 Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + E++ ++ SG I ++ S +H +L A + + Sbjct: 171 SHLEETMGGPSLTVAILPISGKIAMLETSQR---IHINHLEPVLTEAVRGCRYIYENLNK 227 Query: 237 VISNE 241 +I Sbjct: 228 IIKKH 232 >gi|330835837|ref|YP_004410565.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina Ar-4] gi|329567976|gb|AEB96081.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina Ar-4] Length = 283 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 97/232 (41%), Gaps = 23/232 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ N R +S+T +K A+GS LVK GDT +L +EE P + G + Sbjct: 28 RNDGRKFNDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKIEEDEP-YSDTPNQGNLVV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 +LP + G + E+ R++ R+LR VDLSAL G R + Sbjct: 87 NAELLPLAYET-----FEPGPPDENAIELSRVVDRSLRDSKAVDLSALVIEPGKRVWTVW 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAIS 165 +D V+ G A A AL+D + ++ VA ++ Sbjct: 142 VDISVLDYGGNILDACTLSAVAALYDTKLPRIVNDNGTINIVKEDKTTPFPIRYPVATVT 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217 L + +VD D E+ +D +F GHIV +Q S E +FSQ Sbjct: 202 IAKLGKFLVVDPDLEEEGIMDAKISFSYIPDGHIVGIQKSGE-GSFSQQEIE 252 >gi|242399325|ref|YP_002994749.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM 739] gi|242265718|gb|ACS90400.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM 739] Length = 269 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 103/256 (40%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR R +++ V + AEGS LVK G+T +L +E P + G IT Sbjct: 21 RIDGRGLEDFRPLTVETNVIEKAEGSALVKLGNTQVLVGIKVELGEP-FPDLPDMGVITT 79 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 +P ++ G + E+ R+I R +R +DL L R I Sbjct: 80 NVEFVPLASPT-----FEPGPPDESAIELARIIDRGIRESQAIDLEKLVIVPGKLVRVIF 134 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------LSQVLKGHVAAIS 165 ID V+ DG A+ GA AL D + + + +K ++ Sbjct: 135 IDVHVLDHDGNLLDASGIGAIAALLSTKIPKVDYNEEIEEVVMLEEYEKLPVKRIPIPVT 194 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + G +VD ++ E+ +D ++G+I VQ S E +F + ++LA Sbjct: 195 LAKIGGNLVVDPNFEEEQVMDGKITITTDENGYISAVQKS-EGGSFKLEEVVYAVDLAYK 253 Query: 226 RIADLIKLQKDVISNE 241 + ++ K+ I E Sbjct: 254 KAEEVRKVVFGAIKEE 269 >gi|15920654|ref|NP_376323.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus tokodaii str. 7] gi|29336897|sp|Q975G9|ECX2_SULTO RecName: Full=Probable exosome complex exonuclease 2 gi|15621437|dbj|BAB65432.1| 275aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 275 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 23/255 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ + R IS+T +K AEGS LVK GDT +L LEE+ P + G + Sbjct: 27 IRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEP-FPDTPNQGNLV 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112 +LP + G + E+ R++ R+LR VDLS L G + Sbjct: 86 VNVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPGKKVWTA 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC--------LQHMEDCSNKFQLSQVLKGHVAAI 164 +D V+ G A A AL++ +++ + + V + Sbjct: 141 WVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDNVKIIKEEKTDVTPIAYPVVTV 200 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + + Y +VD E+S DV +F G IV +Q S + S +LA+ Sbjct: 201 TVAKIGKYLVVDPSLDEESIADVKISFSYVQDGRIVGMQKS-NFGSLSLQEVDVAESLAR 259 Query: 225 DRIADLIKLQKDVIS 239 L + K I+ Sbjct: 260 SASQKLFEELKKQIN 274 >gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130] gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130] Length = 263 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 94/239 (39%), Gaps = 21/239 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59 R GR++ ++R++S+ A+GS L+ G T +L + + M I Sbjct: 16 FRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANI 75 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E + STG R KR + R E I VV S QI I ++ Sbjct: 76 NVEVTVASFSTGERRKRL----KGDKRILEFAATIKSTFEPVVRTSLYPRSQIDIYIQIL 131 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q DGGT I G +AL + M D V AIS G+ P++DL Sbjct: 132 QQDGGTLQTCINGTTLALINAGIPMSD-------------FVCAISGGVHSTSPMLDLTT 178 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + VM S +V V + F +L LA+D A L K K+ + Sbjct: 179 LEENDVPHVTVAVMPKSKKVVLVTM---ETRLHVERFEEVLCLARDAAAVLHKEMKEAV 234 >gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM 2088] gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus DSM 2088] Length = 270 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 22/246 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR + R+I + V AEGS VK GDT +L P + N G I Sbjct: 26 RLDGRSFYEFRDIKIKTGVISKAEGSARVKLGDTQVLVGVKPTIGEP-FPDNPNLGIIIT 84 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113 +LP ++ G RS E+ R++ R +R ++DL L G + + Sbjct: 85 NSELLPMASPT-----FEPGPPDERSIELARVVDRCIRESNMLDLEKLCIIEGEKVWILF 139 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQV----LKGHVAAISC 166 ID ++ DG A++ GA AL D +ED S V +K VA + Sbjct: 140 IDLHILDYDGNLFDASVLGAVAALMDTKLPKVSIEDDEVVIDDSSVELLDIKDKVAMCTF 199 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ++D E+ + + M G I +Q + + S++ +N+A+++ Sbjct: 200 AKIGDELVLDPSLEEEEILTARLSIGMNSEGKICAMQKGG-KGSLSREDISKAINIAEEK 258 Query: 227 IADLIK 232 +L++ Sbjct: 259 TPELLQ 264 >gi|3341558|emb|CAA13123.1| z11f [Vibrio cholerae] Length = 138 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 66/140 (47%), Positives = 90/140 (64%), Gaps = 2/140 (1%) Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 +VDL A+G I +DCDVIQADGGTRTA+ITGA VAL D H+ + +KGH Sbjct: 1 MVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGH 58 Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 VAA+S G+L + DL+Y EDS D D N VMT+ G ++E+QG+AE FS + +L Sbjct: 59 VAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELL 118 Query: 221 NLAKDRIADLIKLQKDVISN 240 +AK IAD++ +QK + + Sbjct: 119 AVAKKGIADIVAVQKASLLD 138 >gi|315229928|ref|YP_004070364.1| exosome complex exonuclease 2 [Thermococcus barophilus MP] gi|315182956|gb|ADT83141.1| exosome complex exonuclease 2 [Thermococcus barophilus MP] Length = 270 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R + + V + AEGS VK G+T +L L+ P + G +T Sbjct: 21 RIDGRSLEDLRPLEVKVNVIEKAEGSAWVKLGNTQVLVGIKLDLGEP-FPDLPDKGVMTT 79 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 ++P ++ G R+ E+ R++ R +R +DL L R + Sbjct: 80 NVELVPLASPT-----FEPGPPDERAIELARVVDRGIRESQAIDLEKLVIIPGKLVRVVF 134 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165 ID V+ DG A GA AL +++ E+ L + +S Sbjct: 135 IDVHVLDHDGNLVDATGIGAIAALLSTKMPKIEYNEETGEVMMLDEYEPLPVTKIPIPVS 194 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + G +VD + E+ +D ++G+I VQ S E +F + +++A Sbjct: 195 FAKIGGTIVVDPNLEEEHVMDGKLTITTDENGYISAVQKS-EGGSFKLEEVMYAVDVAFK 253 Query: 226 RIADLIKLQKDVISNE 241 + ++ + + + + Sbjct: 254 KAQEIREKILEAVGKK 269 >gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642] gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642] Length = 259 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 98/244 (40%), Gaps = 15/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R+I + V + AEGS LVK G+T +L ++ P + G I Sbjct: 23 RIDGRKFDEIRKIEIQTGVIEKAEGSALVKLGNTQVLVGVKMQPGEP-FPDAPNKGIIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113 ++P ++ G + E+ R++ R +R VDL L + I Sbjct: 82 NAELVPLASPT-----FEPGPPDENAIELARVVDRGIRESEAVDLEKLCIEEGEKVWLIF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID + DG A+ GA AL + E ++ AI+ ++ Sbjct: 137 IDIWALDDDGNLLDASALGAIAALLNTTVPAERFEVGDDFPLPVRDLPVAITSLIVENKI 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +VD E S +IV +Q S ++ F+ + L+ + ++ KL Sbjct: 197 LVDPIKDETSVAKNFLTITTDSEDNIVAIQKSG-SYLLPEEKFYEAIELSIRKAREVRKL 255 Query: 234 QKDV 237 +V Sbjct: 256 LAEV 259 >gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102 [Chlorella variabilis] Length = 241 Score = 172 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59 +RL GR+ ++R++ V A+GS L + G+T +L + V + + + Sbjct: 8 LRLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAVFGPKPVEQRSQEDERRAIV 67 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY M STG G+ R+ EI I + + L QI I V+ Sbjct: 68 KCEYAMASFSTGE----RRRRGKADRRATEIGMAIRNTMEQTILTELLPRSQIDIYVQVL 123 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGGTR C C + ++ VA+ + G L ++DL+Y Sbjct: 124 QADGGTR-------------CACINAACMAAAAAAIPMRDLVASCAAGYLESTALLDLNY 170 Query: 180 GEDSTIDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 EDS D + +V +Q + S + F +L L + + Sbjct: 171 MEDSGGGPDVAVAIHANHEDRVVLLQ---QDNRLSIETFEEVLELGVAGCRAVAAFMRQQ 227 Query: 238 ISNE 241 + Sbjct: 228 LLQH 231 >gi|298674552|ref|YP_003726302.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303] gi|298287540|gb|ADI73506.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303] Length = 260 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 15/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R +++R+IS+ + AEGS V +GDT L+ L+ P + G I Sbjct: 23 REDNRAFDEIRDISIETDIIGNAEGSAKVYWGDTQLIVGVKLQVGEP-FPDTPDKGIIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QII 113 + P ++ + +G + EI R++ R +R +DL+ L + Sbjct: 82 SLELNPIASPD-----FEAGPPKEDAIEIARVVDRGIRESGAIDLNKLCITEGEEVWTVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID +V+ DG AA GA AL E + ++ IS + G Sbjct: 137 IDVNVLNDDGNIMDAASIGAIAALMTTNIPAESEGYGEDMMMPVRDIPVGISLVDISGEL 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 +VD Y E+S D V G I +Q S + +++ N+A+ R +++ + Sbjct: 197 MVDPTYNEESVCDTKITVVSNQDGSISAMQKSG-TGSLTEEKVLQAANIARTRASEIRE 254 >gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis] gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis] Length = 268 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 24/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +++R + L V A+GS ++ +T ++ + P + G +T Sbjct: 36 RQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTC 95 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P S R K Q +E ++ +AL V L Q+ I V++ Sbjct: 96 EFKFAPFSCIYRRKHI-----QDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLEN 150 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG +A I A VAL M D V+A + + ++D E Sbjct: 151 DGSALSAGIICASVALAMAGIEMLDL-------------VSACTMVQSDNHILMDPCEKE 197 Query: 182 ---DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 S ++ + V G + +QD L+ + A ++ + + + Sbjct: 198 IHSSSASGHTMVAILPS---LNVVSGLVQEGELTQDAATKALSSCIEGCARILPIMQQAL 254 Query: 239 SNEV 242 + Sbjct: 255 VKNI 258 >gi|240104092|ref|YP_002960401.1| exosome complex RNA-binding protein Rrp42 [Thermococcus gammatolerans EJ3] gi|259645408|sp|C5A2B8|ECX2_THEGJ RecName: Full=Probable exosome complex exonuclease 2 gi|239911646|gb|ACS34537.1| 3'-5' exoribonuclease, exosome complex exonuclease 2, Rrp42p-like protein (Rrp42p) [Thermococcus gammatolerans EJ3] Length = 273 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 23/255 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + R+I + + AEGS V+ G T +L ++ P + G +T Sbjct: 24 RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 ++P ++ G R+ E+ R+I R +R V+L L R + Sbjct: 83 NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165 ID V+ DG A A AL +++ E+ +L +K ++ Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEIIKLDEYEPLPVKHVPIPVT 197 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + IVD + E++ +D ++GHI VQ E +F + ++ A Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQK-GEGGSFKLEEVMYAIDTALK 256 Query: 226 RIADLIKLQKDVISN 240 + +L K+ + + + Sbjct: 257 KADELRKILLEAVGS 271 >gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M] gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M] Length = 233 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 92/259 (35%), Gaps = 48/259 (18%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GR N++R+ + V A+GS + G+T + L+ + + Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKP-------GREQSNLK 53 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y MLP + R R E+ +I +AL + + I ++I+ Sbjct: 54 VSYRMLPFAGEERKG-----LGLTRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIK 108 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY- 179 AD GTR AAI +AL M+ V AI+ G + ++DL+ Sbjct: 109 ADAGTRVAAINALSLALAHAGIPMKAL-------------VGAIAVGKVGEKIVLDLNKQ 155 Query: 180 GEDSTID------------------VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 ED + VD M I +Q + + + Sbjct: 156 EEDYDSEIIKKELPQYYEYYGEGKAVDIPMAM-YKNKITLLQLDG---SIDRKSLLEAIK 211 Query: 222 LAKDRIADLIKLQKDVISN 240 L KD I +I LQK I + Sbjct: 212 LGKDGIKRMIDLQKIAIED 230 >gi|156937004|ref|YP_001434800.1| exosome complex RNA-binding protein Rrp42 [Ignicoccus hospitalis KIN4/I] gi|156565988|gb|ABU81393.1| ribosomal RNA-processing protein RRP42 [Ignicoccus hospitalis KIN4/I] Length = 276 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 103/256 (40%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R+ +Q R I +T V A GS LV+ G+T +L +E P + G + Sbjct: 28 RIDKRRLDQYRPIKITLGVGGKAHGSALVEIGNTKVLAGVKVEVGKP-FKDVPDAGVLNV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113 +LP ++ E G + E+ R+I RALR V+DL L G + + Sbjct: 87 NAELLPLASS-----EFEPGPPDENAIELARVIDRALREPGVIDLKELVLIPGEKVLVVW 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAIS 165 +D V+ DG A++ + AL D + + + V +++ Sbjct: 142 LDVYVLDHDGNLFDASMLASMAALLDTRYPEYVVREDGSVEVDEANKRPLPIANKVVSVT 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 +L +VD E+ D F + G +V +Q S A D NLA Sbjct: 202 LNVLENLFMVDPTLEEEVVADGKIVFAFDERGRLVGLQKSG-PAWLDLDKSTTAFNLAYS 260 Query: 226 RIADLIKLQKDVISNE 241 + +L+++ + ++ Sbjct: 261 KYKELLEVLEKSLAER 276 >gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus] Length = 244 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 91/243 (37%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59 +R GR+ ++R + V K A+GS ++ G T ++ +V R G + Sbjct: 13 LRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 EY + P S R KR + EI + + L QI I VI Sbjct: 73 NCEYNVAPFSGSERKKRRPTERK----GMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVI 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q+DGG I A +AL D M D V A S G L G P++DL+Y Sbjct: 129 QSDGGVLPVGINAASLALVDAGVAMSDL-------------VVACSAGYLDGMPVMDLNY 175 Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E + V+ + ++ + + + F +L A D + ++ + + Sbjct: 176 VEQALGGPYLPVAVLPEKDKLLLAKM---ESRLPLEIFEEVLRAATDACQQVHEVLRAAV 232 Query: 239 SNE 241 Sbjct: 233 KEH 235 >gi|147919674|ref|YP_686582.1| exosome complex RNA-binding protein Rrp42 [uncultured methanogenic archaeon RC-I] gi|121687882|sp|Q0W2Y7|ECX2_UNCMA RecName: Full=Probable exosome complex exonuclease 2 gi|110621978|emb|CAJ37256.1| putative exosome complex exonuclease 2 [uncultured methanogenic archaeon RC-I] Length = 260 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 92/239 (38%), Gaps = 15/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++ R IS+ V AEGS VK GD+ ++ ++ P + G I Sbjct: 23 RADGRKFDEFRAISVETGVINKAEGSARVKIGDSQVVVGVKIQPGEP-FPDTPDSGVIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QII 113 ++P ++ SG + E+ R++ R +R +DLS L + Sbjct: 82 NLELVPLASPT-----FESGPPREDAIELARVVDRGVRESGAIDLSKLCIESGQKVWMVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ DG AA GA AL + L ++ + G Sbjct: 137 IDVHVLDHDGNLMDAASLGAIAALKATKIPNSKFGLGEDVKLPLNDVPIGVTAVNIGGAI 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++D E+S + G I +Q S T + D ++ LAK++ L + Sbjct: 197 MLDPSLDEESVAPCKLTVITNKEGAISGMQKSG-VGTLTPDQINHIIRLAKEKANVLRE 254 >gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545] Length = 245 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 23/241 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR+ + R++ V A+GS + G+T ++ + V R+ + I Sbjct: 9 LRLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDERAII 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E+ STG R R G+ RS E+ +I +AL + V + +I + V+ Sbjct: 69 KCEFSQAAFSTGERRAR----GKGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG R AAI A +A+ + M K +AA S G L G P++DL+Y Sbjct: 125 QADGGVRAAAINAAVLAIANAGIPM-------------KDTMAACSAGYLDGTPLLDLNY 171 Query: 180 GEDSTIDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 E+ V + + +V VQ + S + F + LA + A + K+ ++ Sbjct: 172 VEEGGGGVRVHVATHASRGDKVVVVQTDNKA---SVEVFEPVHALAVEGCAVVQKVMREA 228 Query: 238 I 238 + Sbjct: 229 M 229 >gi|156550959|ref|XP_001603897.1| PREDICTED: similar to ENSANGP00000009222 [Nasonia vitripennis] Length = 270 Score = 168 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 24/257 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55 +R GR+ ++R I L V A+GS ++ G T +L T + P N Sbjct: 12 LRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQ-PRGKANANALKAV 70 Query: 56 HGWITAEYGMLPRST--GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 G + +Y S G R K+ R +SQE + + A+ ++++L QI Sbjct: 71 KGIVNCQYSTAVFSFGAGERKKKP----RGDRKSQERSQQLRHAMEAIINLELFARSQID 126 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 I +V+Q DG A+ A +AL D ++D + ++ G G Sbjct: 127 IFVEVLQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSVTVSDNLLGDDDDSG--QGTG 184 Query: 174 IVDLDYGEDSTIDVDANFVMTDSG--------HIVEVQGSAERATFSQDHFFAMLNLAKD 225 I+D ++ E+ + V + V ++ G+ +R S+ + A Sbjct: 185 ILDANWIEECSPGVTLSVVALPKVVDETETKSSVILCHGAGQRLHLSRLEPLRLR--ALQ 242 Query: 226 RIADLIKLQKDVISNEV 242 D+ + + + + Sbjct: 243 GCRDIRAILDQAVKDHL 259 >gi|254172923|ref|ZP_04879597.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4] gi|214033079|gb|EEB73907.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4] Length = 273 Score = 167 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 102/255 (40%), Gaps = 23/255 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + R+I + + AEGS V+ G T +L ++ P + G +T Sbjct: 24 RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 ++P ++ G R+ E+ R+I R +R V+L L R + Sbjct: 83 NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165 ID V+ DG A A AL +++ E+ +L ++ ++ Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALLTTRVPKVEYNEETGEIVKLDEYEPLPVRRIPLPVT 197 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + IVD + E++ +D ++GHI VQ E +F + ++ A Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRITITTDETGHISAVQK-GEGGSFKLEEVMYAIDTALK 256 Query: 226 RIADLIKLQKDVISN 240 + +L K+ + + + Sbjct: 257 KADELRKILLEAVGS 271 >gi|254168306|ref|ZP_04875152.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469] gi|197622815|gb|EDY35384.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469] Length = 270 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 100/241 (41%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R +++T+ AEGS LV G+T +L +E P + G +T Sbjct: 28 RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113 + P ++ G G + E+ R++ R +R +DL L G + + Sbjct: 87 NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ DG AA GA AL + + ++ + ++ + + Sbjct: 142 IDIHVLDYDGNLFDAAGYGALAALTNAIVPASRYDLGEDFKLPVQHYPVPVTFAKIGDWI 201 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD---RIADL 230 + D + E+S + G I +Q TF+ + ++N++ + ++ ++ Sbjct: 202 VADPNLDEESIASARLTVATNEEGKINAMQK-GLSGTFTYEEVKKVINMSMNIGGKVREI 260 Query: 231 I 231 I Sbjct: 261 I 261 >gi|299689088|pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|299689091|pdb|3L7Z|D Chain D, Crystal Structure Of The S. Solfataricus Archaeal Exosome gi|299689094|pdb|3L7Z|G Chain G, Crystal Structure Of The S. Solfataricus Archaeal Exosome Length = 271 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 19/251 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 27 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112 +LP + G + E+ R++ R+LR +DL+ L G + Sbjct: 86 VNVELLPLAYTT-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTV 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGHVAAISCGM 168 +D V+ G A + AL++ ++ + N+ L V IS Sbjct: 141 WLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQISVNKNEVVGKLPLNYPVVTISVAK 200 Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 + Y +VD D E+S +D +F T IV +Q S + + S N A+ Sbjct: 201 VDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTARSTAV 259 Query: 229 DLIKLQKDVIS 239 L++ K + Sbjct: 260 KLLEELKKHLG 270 >gi|289595859|ref|YP_003482555.1| 3' exoribonuclease [Aciduliprofundum boonei T469] gi|289533646|gb|ADD07993.1| 3' exoribonuclease [Aciduliprofundum boonei T469] Length = 270 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 99/241 (41%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R +++T+ AEGS LV G+T +L +E P + G +T Sbjct: 28 RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113 + P ++ G G + E+ R++ R +R +DL L G + + Sbjct: 87 NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ DG AA GA AL + ++ + ++ + + Sbjct: 142 IDIHVLDYDGNLFDAAGYGALAALTNATVPASRYDLGEDFKLPVQHYPVPVTFAKIGDWI 201 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD---RIADL 230 + D + E+S + G I +Q TF+ + ++N++ + ++ ++ Sbjct: 202 VADPNLDEESIASARLTVATNEEGKINAMQK-GLSGTFTYEEVKKVINMSMNIGGKVREI 260 Query: 231 I 231 I Sbjct: 261 I 261 >gi|126031137|pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome gi|145579800|pdb|2JEA|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna gi|145579804|pdb|2JEB|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions Length = 277 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 23/255 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 29 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 87 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112 +LP + G + E+ R++ R+LR +DL+ L G + Sbjct: 88 VNVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTV 142 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAI 164 +D V+ G A + AL++ + +E SN +++ L V I Sbjct: 143 WLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTI 202 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 S + Y +VD D E+S +D +F T IV +Q S + + S N A+ Sbjct: 203 SVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTAR 261 Query: 225 DRIADLIKLQKDVIS 239 L++ K + Sbjct: 262 STAVKLLEELKKHLG 276 >gi|15897635|ref|NP_342240.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus P2] gi|284174961|ref|ZP_06388930.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus 98/2] gi|29337006|sp|Q9UXC0|ECX2_SULSO RecName: Full=Probable exosome complex exonuclease 2 gi|71042716|pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome gi|71042718|pdb|2BR2|C Chain C, Rnase Ph Core Of The Archaeal Exosome gi|71042720|pdb|2BR2|E Chain E, Rnase Ph Core Of The Archaeal Exosome gi|71042722|pdb|2BR2|G Chain G, Rnase Ph Core Of The Archaeal Exosome gi|71042724|pdb|2BR2|I Chain I, Rnase Ph Core Of The Archaeal Exosome gi|71042726|pdb|2BR2|K Chain K, Rnase Ph Core Of The Archaeal Exosome gi|71042728|pdb|2BR2|M Chain M, Rnase Ph Core Of The Archaeal Exosome gi|71042730|pdb|2BR2|O Chain O, Rnase Ph Core Of The Archaeal Exosome gi|71042732|pdb|2BR2|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome gi|71042734|pdb|2BR2|S Chain S, Rnase Ph Core Of The Archaeal Exosome gi|71042736|pdb|2BR2|U Chain U, Rnase Ph Core Of The Archaeal Exosome gi|71042738|pdb|2BR2|W Chain W, Rnase Ph Core Of The Archaeal Exosome gi|83754538|pdb|2C37|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754540|pdb|2C37|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754542|pdb|2C37|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754544|pdb|2C37|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754546|pdb|2C37|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754548|pdb|2C37|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754550|pdb|2C37|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754552|pdb|2C37|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754554|pdb|2C37|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754556|pdb|2C37|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754558|pdb|2C37|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754560|pdb|2C37|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With U8 Rna gi|83754562|pdb|2C38|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754566|pdb|2C38|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754568|pdb|2C38|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754570|pdb|2C38|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754572|pdb|2C38|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754574|pdb|2C38|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754576|pdb|2C38|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754578|pdb|2C38|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754580|pdb|2C38|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754582|pdb|2C38|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|83754586|pdb|2C39|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754588|pdb|2C39|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754590|pdb|2C39|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754592|pdb|2C39|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754594|pdb|2C39|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754596|pdb|2C39|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754598|pdb|2C39|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754600|pdb|2C39|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754602|pdb|2C39|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754604|pdb|2C39|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754606|pdb|2C39|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|83754608|pdb|2C39|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp gi|313507220|pdb|2C38|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|313507221|pdb|2C38|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With A5 Rna gi|6015744|emb|CAB57571.1| conserved hypothetical protein [Sulfolobus solfataricus P2] gi|13813902|gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261602404|gb|ACX92007.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2] Length = 275 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 23/255 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 27 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112 +LP + G + E+ R++ R+LR +DL+ L G + Sbjct: 86 VNVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTV 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAI 164 +D V+ G A + AL++ + +E SN +++ L V I Sbjct: 141 WLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTI 200 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 S + Y +VD D E+S +D +F T IV +Q S + + S N A+ Sbjct: 201 SVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTAR 259 Query: 225 DRIADLIKLQKDVIS 239 L++ K + Sbjct: 260 STAVKLLEELKKHLG 274 >gi|302348935|ref|YP_003816573.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans 345-15] gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans 345-15] Length = 280 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 23/256 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R R +S+ V A+GS VK G+T +L LE +P + G + Sbjct: 27 VRSDQRDFATPRNLSIQVGVIDKADGSAWVKLGNTQVLVGVKLEVGIP-YRDTPNEGVLQ 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112 + P ++ G + E+ R+I R+LR +DLS+L G + + Sbjct: 86 VNSELTPVASPT-----FEPGPPDENAVELSRVIDRSLRDPKAIDLSSLVIRPGEKAWVL 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF------QLSQVLK--GHVAAI 164 ID V+ DG A++ G AL + + + + LK VA + Sbjct: 141 WIDIYVLDYDGNYFDASMLGVMAALMNTKVPEYEETESGEIIINREKGTPLKLNRRVALV 200 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + + Y ++D + E+ D + G IV +Q S +++D ++++++ Sbjct: 201 TSVKVGDYILIDPNIDEELLADSRMVIAFDEQGTIVGMQKSGMGG-YTRDELLKVIDISR 259 Query: 225 DRIADLIKLQKDVISN 240 + KL + + Sbjct: 260 NASQVYFKLLDQALQS 275 >gi|21228726|ref|NP_634648.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina mazei Go1] gi|29336794|sp|Q8PTT7|ECX2_METMA RecName: Full=Probable exosome complex exonuclease 2 gi|20907235|gb|AAM32320.1| Ribonuclease [Methanosarcina mazei Go1] Length = 266 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 89/237 (37%), Gaps = 15/237 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR RE+ L V AEGS V G+T +L L+ P + + G I Sbjct: 25 RQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 + P ++ E G + E+ R++ R +R +D+ L + Sbjct: 84 NLELNPIASP-----EFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID ++ DG A+ A AL + E + +K I+ + Sbjct: 139 IDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGLGENVPLAMKEMPVGITLAKIGSKL 198 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +VD E++ + V + G + +Q ++ F +++A ++ A++ Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG-PVPLTEAELFEAIDMAIEKAAEI 254 >gi|20090627|ref|NP_616702.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina acetivorans C2A] gi|29336812|sp|Q8TGX5|ECX2_METAC RecName: Full=Probable exosome complex exonuclease 2 gi|19915669|gb|AAM05182.1| tRNA nucleotidyltransferase [Methanosarcina acetivorans C2A] Length = 266 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 90/237 (37%), Gaps = 15/237 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R++ L V AEGS V G+T +L L+ P + + G I Sbjct: 25 RQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 + P ++ E G + E+ R++ R +R +D+ L + Sbjct: 84 NLELNPIASP-----EFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ DG A+ A AL + E + +K I+ + Sbjct: 139 IDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGEDVPLAMKEMPVGITIAKIGSKL 198 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +VD E++ + V + G + +Q + ++ F ++LA ++ A+L Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG-ISPLTEAELFEAIDLALEKAAEL 254 >gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus yFS275] gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus yFS275] Length = 243 Score = 164 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 90/237 (37%), Gaps = 22/237 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59 +R GR+ N+MRE V K A GS ++ G+T +L E + +I Sbjct: 13 LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFI 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E P S +R KR R R QE I R + + QI I +V+ Sbjct: 73 NVELNFAPFSLIDRKKRH----RSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + DGG I A +AL D M D +V + G+ ++DL+ Sbjct: 129 EDDGGAIATCINAATLALIDAGIAMVD-------------YVCCATAGIYETQVLLDLNT 175 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL-IKLQK 235 E+S I V+ G + + + S D F L A + +++QK Sbjct: 176 NEESDISWMTVGVLGTKGKVTYL---KQETKLSLDLFEPALTTAIAGCDHIALQMQK 229 >gi|212223176|ref|YP_002306412.1| exosome complex RNA-binding protein Rrp42 [Thermococcus onnurineus NA1] gi|226740342|sp|B6YSE7|ECX2_THEON RecName: Full=Probable exosome complex exonuclease 2 gi|212008133|gb|ACJ15515.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1] Length = 272 Score = 164 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 101/256 (39%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR R++ + V + AEGS VK G+T +L ++ P + + G IT Sbjct: 24 RVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIKVDMGEP-FPDLPEKGVITT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 ++P ++ + G R+ E+ R++ R +R V+L L R + Sbjct: 83 NVELVPLASPS-----FEPGPPDERAIELARVVDRGIRESGAVELEKLVIVPGKLVRVVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------LSQVLKGHVAAIS 165 ID V+ DG A+ GA AL + + ++ Sbjct: 138 IDVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEVQILDEYEPLPVSKMPIPVT 197 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + G +VD + E+ +D ++G I VQ S E +F + ++LA Sbjct: 198 IAKVGGNLLVDPNLDEELVMDGRITITTDENGMISSVQKS-EGGSFKLEEVMYAIDLALT 256 Query: 226 RIADLIKLQKDVISNE 241 + A++ + + + E Sbjct: 257 KAAEIREKVLEAVGAE 272 >gi|282165296|ref|YP_003357681.1| probable exosome complex exonuclease 2 [Methanocella paludicola SANAE] gi|282157610|dbj|BAI62698.1| probable exosome complex exonuclease 2 [Methanocella paludicola SANAE] Length = 259 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 15/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++ R +++ V AEGS V GD+ ++ ++ P ++ G I Sbjct: 23 RADGRKFDEFRPVTIKVGVIGKAEGSSDVMIGDSRVVVGVKIQPGEP-FMDTPDKGVIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QII 113 ++P ++ +G + E+ R++ R +R +DLS L + Sbjct: 82 NLELVPLASPT-----FETGPPREDAIELARVVDRGVRESEAIDLSKLCIESGQKVWMVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ DG AA GA AL L+ ++ + Sbjct: 137 IDVHVLDHDGNLMDAASMGAIAALMSAKIPNAKFGLGEDAKLPLEDVPVGVTAVKIGSSI 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 I+D E++ + G + +Q S T + D ++++AK++ L + Sbjct: 197 ILDPSLDEENVASCKLTVITNKEGALAGMQKSG-VGTLTPDEVKYIVHIAKEKANVLRQK 255 Query: 234 QKD 236 ++ Sbjct: 256 LEE 258 >gi|229582055|ref|YP_002840454.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus Y.N.15.51] gi|259645406|sp|C3NHC2|ECX2_SULIN RecName: Full=Probable exosome complex exonuclease 2 gi|228012771|gb|ACP48532.1| 3' exoribonuclease [Sulfolobus islandicus Y.N.15.51] Length = 275 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 23/254 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 28 RQDGRKLTDYRPLSITLNYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 +LP + G + E+ R++ R+LR +DL+ L G + Sbjct: 87 NVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAIS 165 +D V+ G A + AL++ + +E SN F++++ L V +S Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + Y IVD D E+S +D +F T IV +Q S + + S N A+ Sbjct: 202 IAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTARL 260 Query: 226 RIADLIKLQKDVIS 239 L++ K + Sbjct: 261 VAVKLLEELKKQLG 274 >gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum] Length = 213 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 22/203 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58 +R GR+ ++R I V +GS ++ G+T ++ ++ Sbjct: 9 LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAV 68 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I +Y M S R +R + +S E+ + +A+ + + QI I V Sbjct: 69 INCQYSMATFSRSERKRRP-----RDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQV 123 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDL 177 +Q+DGG + + A +AL D ME+ V + + + G P+VD+ Sbjct: 124 LQSDGGNYSVCVNAATLALIDAGIAMEE-------------FVISCTSSLANGETPLVDI 170 Query: 178 DYGEDSTIDVDANF-VMTDSGHI 199 + E++ ++ SG + Sbjct: 171 SHLEETMGGPSLTVAILPISGKV 193 >gi|227827678|ref|YP_002829458.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus M.14.25] gi|229584882|ref|YP_002843384.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus M.16.27] gi|259645402|sp|C3N5R4|ECX2_SULIA RecName: Full=Probable exosome complex exonuclease 2 gi|259645405|sp|C3MVG5|ECX2_SULIM RecName: Full=Probable exosome complex exonuclease 2 gi|227459474|gb|ACP38160.1| 3' exoribonuclease [Sulfolobus islandicus M.14.25] gi|228019932|gb|ACP55339.1| 3' exoribonuclease [Sulfolobus islandicus M.16.27] Length = 275 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 23/254 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 +LP + G + E+ R++ R+LR +DL+ L G + Sbjct: 87 NVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAIS 165 +D V+ G A + ALH+ + +E SN F++++ L V +S Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + Y IVD D E+S +D +F T IV +Q S + + S N A+ Sbjct: 202 IAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTARL 260 Query: 226 RIADLIKLQKDVIS 239 L++ K + Sbjct: 261 VAVKLLEELKKQLG 274 >gi|227830375|ref|YP_002832155.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus L.S.2.15] gi|229579193|ref|YP_002837591.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus Y.G.57.14] gi|238619849|ref|YP_002914675.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus M.16.4] gi|284997881|ref|YP_003419648.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5] gi|259645403|sp|C4KHE3|ECX2_SULIK RecName: Full=Probable exosome complex exonuclease 2 gi|259645404|sp|C3MQ47|ECX2_SULIL RecName: Full=Probable exosome complex exonuclease 2 gi|259645407|sp|C3NED0|ECX2_SULIY RecName: Full=Probable exosome complex exonuclease 2 gi|227456823|gb|ACP35510.1| 3' exoribonuclease [Sulfolobus islandicus L.S.2.15] gi|228009907|gb|ACP45669.1| 3' exoribonuclease [Sulfolobus islandicus Y.G.57.14] gi|238380919|gb|ACR42007.1| 3' exoribonuclease [Sulfolobus islandicus M.16.4] gi|284445776|gb|ADB87278.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5] Length = 275 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 23/254 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 +LP + G + E+ R++ R+LR +DL+ L G + Sbjct: 87 NVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAIS 165 +D V+ G A + AL++ + +E SN F++++ L V +S Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + Y IVD D E+S +D +F T IV +Q S + + S N A+ Sbjct: 202 IAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTARL 260 Query: 226 RIADLIKLQKDVIS 239 L++ K + Sbjct: 261 VAVKLLEELKKQLG 274 >gi|323474736|gb|ADX85342.1| 3' exoribonuclease [Sulfolobus islandicus REY15A] gi|323477464|gb|ADX82702.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4] Length = 275 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 23/254 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ R +S+T +K A+GS LVK G T +L LE P + G + Sbjct: 28 RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 +LP + G + E+ R++ R+LR +DL+ L G + Sbjct: 87 NVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAIS 165 +D V+ G A + AL++ + +E SN F++++ L V +S Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + Y IVD D E+S +D +F T IV +Q S + + S N A+ Sbjct: 202 IAKIDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTARL 260 Query: 226 RIADLIKLQKDVIS 239 L++ K + Sbjct: 261 VAVKLLEELKKQLG 274 >gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM 5219] gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM 5219] Length = 261 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 98/239 (41%), Gaps = 16/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GRQ N++R+I+L + AEGS +V++GDT ++ ++ P + + G I Sbjct: 24 REDGRQFNELRDIALETGIIDKAEGSAMVQYGDTQVMVGVKMQVGTP-FPDSPAEGVIIT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QII 113 + P ++ + +G ++ E+ R++ R +R +D++ L + Sbjct: 83 SMELNPIASPD-----FEAGPPREKAIEMGRIVDRGIRESGAIDINKLCITEGEEVWMVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ G AA GA AL E ++ +S + Sbjct: 138 IDVHVLNNSGNILDAASLGAIAALMTTTVPSEREGKGEDYPMPVREMPVGVSLVKIGDEM 197 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++D YGE+S + G I +Q S + S +AK++ ++I+ Sbjct: 198 VLDPTYGEESVCETRITISSNQDGSICSMQKSG-SGSLSPAQVVKASKIAKEK-GEIIR 254 >gi|40217447|emb|CAE46380.1| 3'-5' exoribonuclease [uncultured archaeon] gi|268323830|emb|CBH37418.1| 3'-5' exoribonuclase [uncultured archaeon] Length = 260 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 15/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R+I + R + K AEGS V+ GDT +L +E P + G + Sbjct: 23 RADGRGFLDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGEP-FPDTPNKGILMT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ E SG G S E+ R++ R +R +DL L G + I Sbjct: 82 NAELVPLASP-----EFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID + DG AA GA ++L + E + + ++ A++ + G Sbjct: 137 IDIHTLDNDGNLVDAAALGAIMSLLNVAIPYEQYGLTGEDTLQIRDTPVAVTVVEIRGNL 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 +VD + E+S + G I +Q S +++ M + ++ ++ + Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSGSNG-LTEEKIVKMTEIGIEKAREIRE 254 >gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM 3638] gi|29336823|sp|Q8U0M0|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2 gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638] Length = 277 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 99/255 (38%), Gaps = 23/255 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R R I + V + AEGS LVK G+T +L P + G +T Sbjct: 24 RIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEP-FPDTPNMGVMTT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 ++P ++ G R+ E+ R+I R +R ++L + R + Sbjct: 83 NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGKIVRVVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQ----VLKGHVAAIS 165 ID V+ DG A GA AL + + + E+ L + ++ +++ Sbjct: 138 IDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEILEEKEPLPVEKIPISVT 197 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + Y +VD E+ +D ++GHI VQ S E F + + A Sbjct: 198 FAKIGNYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKS-EGGAFKLEEVMYAVETAFK 256 Query: 226 RIADLIKLQKDVISN 240 + ++ K+ + + Sbjct: 257 KAEEIRKIILNALEK 271 >gi|116754658|ref|YP_843776.1| exosome complex RNA-binding protein Rrp42 [Methanosaeta thermophila PT] gi|116666109|gb|ABK15136.1| ribosomal RNA-processing protein RRP42 [Methanosaeta thermophila PT] Length = 257 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 90/239 (37%), Gaps = 15/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR Q R I + R + K AEGS LVK G T ++ ++ P + G I Sbjct: 22 RADGRSFTQYRPIEIERNIIKKAEGSALVKLGKTQVMVGIKIQPGEP-FPDAPNRGVIVT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113 ++P ++ G E+ R++ R +R VDL AL G + I Sbjct: 81 NAELVPLASPI-----FEPGPPNEYGIELARVVDRGVRESGSVDLDALCIVPGEKVWIIF 135 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID ++ G A+ GA AL ++ A + Sbjct: 136 IDIHILDDCGNIMDASSLGAIAALLGATVPASRFGLGEDFQLPVRDIPIATTAVEFGDVV 195 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D D E++ D + G I +Q S S+D + ++++A D ++ + Sbjct: 196 LFDPDVDEEAIADAKLTVITKADGTICGMQKSG-PGMLSEDQVYRIVDIACDNAREIRE 253 >gi|325959905|ref|YP_004291371.1| 3' exoribonuclease [Methanobacterium sp. AL-21] gi|325331337|gb|ADZ10399.1| 3' exoribonuclease [Methanobacterium sp. AL-21] Length = 263 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 22/247 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++ REISL V + AEGS VK G+T ++ A + P + G + Sbjct: 22 RTDGRAFDEYREISLEAGVIEKAEGSARVKIGNTQIIIGAKPQIGTP-FGDTPNVGVLMT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113 +LP + N SG S E+ R+ R +R VVDL L I Sbjct: 81 NTELLPMAAPN-----FESGPPDENSVELSRVTDRCIREGEVVDLEKLCIVPGEKVWMIF 135 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF-------QLSQVLKGHVAAISC 166 +D V+ DG AA+ G+ AL + + + + + Sbjct: 136 LDLHVVDYDGNLMDAAVLGSVAALMNTRLPEAKIIDDEVVLDYDNLIPLPINDTALMSTF 195 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + I+D E+ + + +T G+I +Q E+ T +Q+ +++AK + Sbjct: 196 AKIGEELIIDPSLEEEEVMGARLSIGITKDGNICAMQKGGEK-TLTQEEVLKAVSIAKIK 254 Query: 227 IADLIKL 233 A+L KL Sbjct: 255 TAELRKL 261 >gi|52549122|gb|AAU82971.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos24D9] Length = 260 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 15/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R+I + R + K A+GS V+ GDT +L +E P + G + Sbjct: 23 RADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGAP-FPDTPNKGILMT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ E SG S E+ R++ R +R +DL L G + + Sbjct: 82 NAELVPLASP-----EFESGPPNEDSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID + DG AA GA +L + E + + ++ A++ + G Sbjct: 137 IDIHTLDNDGNLVDAAALGAITSLLNVTIPYERYGLTGEDTLQIRDTPVAVTVVEIGGNL 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 +VD + E+S + G I +Q S +++ M+ + ++ ++ + Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSGSTG-LTEEKIVKMIEIGIEKAREIRE 254 >gi|52550027|gb|AAU83876.1| 3'-5' exoribonuclease [uncultured archaeon GZfos34H10] Length = 260 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 96/239 (40%), Gaps = 15/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R+I + R + K A+GS V+ GDT +L +E P + G + Sbjct: 23 RADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGEP-FSDTPNKGILMT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ E SG S E+ R++ R +R +DL L G + + Sbjct: 82 NAELVPLASP-----EFESGPPNENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMLF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID + DG AA GA +L + E + + ++ A++ + G Sbjct: 137 IDIHTLDNDGNLVDAAALGAITSLLNVAIPYEQYGLTGEDTLQIRDTPVAVTVVEIGGNL 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 +VD + E+S + G I +Q S +++ M + ++ ++ + Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSGSNG-LTEEKIVKMAEIGIEKAREIRE 254 >gi|16082607|ref|NP_394748.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma acidophilum DSM 1728] gi|29336948|sp|Q9HIP1|ECX2_THEAC RecName: Full=Probable exosome complex exonuclease 2 Length = 260 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 16/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ RE+++ A GS V G+T ++ +E P + G +T Sbjct: 26 RIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEP-FPDTPDQGVLTT 84 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 +LP + + +G + E+ R++ R +R ++ L Q + Sbjct: 85 NVELLPIAFPS-----FEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVF 139 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 +D +V+ DG A+ A AL + + + + +++ + Sbjct: 140 LDINVLDYDGNLIDASTIAAVAALRNAVVPASKEGGE-DFKLPVSSTPISVTMVKIGDTL 198 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D ED T+ GHI +Q E F+ + + ++ + L + Sbjct: 199 VCDPSLEEDQICGGRITVTTTEDGHIRAMQK-GEIGAFTVEDVKKAVKMSLEVGKKLRE 256 >gi|10640638|emb|CAC12416.1| rRNA processing protein (yeast RRP45) related protein [Thermoplasma acidophilum] Length = 240 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 16/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ RE+++ A GS V G+T ++ +E P + G +T Sbjct: 6 RIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEP-FPDTPDQGVLTT 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 +LP + + +G + E+ R++ R +R ++ L Q + Sbjct: 65 NVELLPIAFPS-----FEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVF 119 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 +D +V+ DG A+ A AL + + + + +++ + Sbjct: 120 LDINVLDYDGNLIDASTIAAVAALRNAVVPASKEGGE-DFKLPVSSTPISVTMVKIGDTL 178 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D ED T+ GHI +Q E F+ + + ++ + L + Sbjct: 179 VCDPSLEEDQICGGRITVTTTEDGHIRAMQK-GEIGAFTVEDVKKAVKMSLEVGKKLRE 236 >gi|145592135|ref|YP_001154137.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum arsenaticum DSM 13514] gi|145283903|gb|ABP51485.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum arsenaticum DSM 13514] Length = 276 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 101/256 (39%), Gaps = 26/256 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q REI + V K A+GS VK G TH++ + P + G + Sbjct: 29 RVDGRALDQTREIEIKTGVVKTADGSAEVKLGKTHVIAGVKVGLGQP-FPDAPDEGVLVV 87 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL-----GSRQIII 114 +LP ++ G + E+ R++ R +R VD L + + + Sbjct: 88 SAEVLPHASPY-----TEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWV 142 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164 D VI DG AA + AL + D +NK L A+ Sbjct: 143 DLYVINDDGNLVDAANLASVAALKNTQLPAVVKDESGAVKLDRNNKSPLPLETSKVPVAV 202 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 S G + +D ++ E+ ++D F +++ IV Q + F+Q A L+LA Sbjct: 203 SVGKIANVLFLDPNFEEELSLDGRVTFTISED-RIVAAQKTL--GYFTQPELEAALDLAI 259 Query: 225 DRIADLIKLQKDVISN 240 ++ K ++ + Sbjct: 260 KGRDRYLEALKSILGS 275 >gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora infestans T30-4] gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora infestans T30-4] Length = 777 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 86/258 (33%), Gaps = 41/258 (15%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54 +R+ GR+ ++R I + +GS + G+T ++ ++ + Sbjct: 25 LRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNSGAA 84 Query: 55 --------------KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS 100 + E+ +T R + + ++ E+ + + + Sbjct: 85 AVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKK----LEMSLAVKQIFEA 140 Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 + QI I V+ ADGG A+I +AL D + D Sbjct: 141 CIQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALND-------------F 187 Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAM 219 V A S G L + DL+Y E+ + + + +Q + F ++ Sbjct: 188 VVASSAGYLQQTMLCDLNYAEEVARAPQMIIALNPRTQKLNLLQM---ECKLQLELFESL 244 Query: 220 LNLAKDRIADLIKLQKDV 237 + +A + + L ++ Sbjct: 245 MEVATEGCNQIYDLLQNA 262 >gi|13541139|ref|NP_110827.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma volcanium GSS1] gi|29336898|sp|Q97BZ4|ECX2_THEVO RecName: Full=Probable exosome complex exonuclease 2 gi|14324526|dbj|BAB59453.1| nucleotidyltransferase [Thermoplasma volcanium GSS1] Length = 260 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 16/232 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ REI++ A GS V G T ++ +E P + G +T Sbjct: 26 RIDGRLPDEFREITIIENYVPRANGSAYVALGKTRVVAGVKIEAGEP-FPDTPDQGVLTT 84 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 +LP + + +G + E+ R++ R +R ++ L Q + Sbjct: 85 NVELLPIAFPS-----FEAGPPNDLAIEVSRVVDRGIRESKMISPDKLVIEQGKKVWIVF 139 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 +D +V+ DG A A AL + + + V+ + +++ + Sbjct: 140 LDINVLDYDGNLIDACTIAAVSALRNAIVPASREGGEDFKLPVVNTPI-SVTMVKIGDTL 198 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + D ED T+ GHI +Q E F+ D + ++ Sbjct: 199 VCDPSLEEDQICGGRITVTTTEDGHIRAMQK-GEIGVFTLDDVKKAIKMSLK 249 >gi|330508838|ref|YP_004385266.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6] gi|328929646|gb|AEB69448.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6] Length = 258 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 98/239 (41%), Gaps = 15/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q REIS+ R V + AEGS LVK G + +L ++ P + + G I Sbjct: 22 RIDGRKFDQYREISIERDVIRKAEGSALVKLGSSQVLVGVKMQPGEP-FQDSPNRGVIIT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQII--- 113 ++P ++ + G E+ R++ R +R VDL AL +++ Sbjct: 81 NAELVPLASPS-----FEPGPPNEVGIELARLVDRGVRESKAVDLEALCIEPGKKVWIVF 135 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID ++ G AA GA AL ++ A + Sbjct: 136 IDVHILDDCGNILDAASLGAISALLCTKVPASRFGLGEDYILPIRDIPIATTAIEFSDVL 195 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D E++ + + T +G I +Q S + + + ++++A ++ ++ + Sbjct: 196 MFDPGVEEEAIANTKLTVITTTNGDICGMQKSG-TGMLNPEQVYRIIDIACEKAKEIRE 253 >gi|52548824|gb|AAU82673.1| 3'-5' exoribonuclease [uncultured archaeon GZfos19A5] Length = 257 Score = 158 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 15/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R+IS+ R V K AEGS VK GDT +L +E P + G I Sbjct: 23 REDGRGFREYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ SG S ++ R++ R +R +DL L G + + Sbjct: 82 NAELVPLASPK-----FESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ +G AA GA +L + E + + ++ A++ + G Sbjct: 137 IDIHVLDDNGNLVDAAALGAITSLLNLRIPNERYGLTGENTLPMRDTPVAVTTVEIEGNI 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 +VD + E + + G + +Q S + M+ + ++ ++ K Sbjct: 197 LVDPSFDEGNAAASSVTVISNADGALSGMQKSGSGG-LKEAQIAEMVEIGIEKAGEIRK 254 >gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8] gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8] Length = 259 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 89/242 (36%), Gaps = 23/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59 R GR++ ++R++++ A+GS LV G T +L + + P + I Sbjct: 14 RSDGRKQYELRDMTIDLSPRASADGSALVSHGLTQVLVSVYGPRE-PKQRSQSAHDRATI 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E G P S+G GR R+QE+ + + VV S I + ++ Sbjct: 73 NVEVGTAPFSSGE----RRKRGRGDKRTQELCYTVQQTFEPVVLTSIYPRSTIDVFITIL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q DG A I +AL L V A+S G+ ++DL Sbjct: 129 QQDGSLIPACINATTLALICAGV-------------PLLDFVCAVSAGVHDTESMLDLTT 175 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E++ + VM +G +V V F M +A D L + K I Sbjct: 176 LEENDLPWVNAAVMPKTGKVVMV---GLETRLHVQRFEEMFRIALDAAKVLHQEMKAAIQ 232 Query: 240 NE 241 + Sbjct: 233 DR 234 >gi|52549527|gb|AAU83376.1| 3'-5' exoribonuclease [uncultured archaeon GZfos27G5] Length = 257 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 15/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++ R+IS+ R V K AEGS VK GDT +L +E P + G I Sbjct: 23 REDGRGFHEYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ SG S ++ R++ R +R +DL L G + + Sbjct: 82 NAELVPLASPK-----FESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ +G AA GA +L + E + + ++ A + + G Sbjct: 137 IDIHVLDDNGNLVDAAALGAITSLLNLRIPNERYGLTGENTLPMRDTPVAATMVEIEGNI 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 +VD + E + + G + +Q S + M+ + ++ ++ K Sbjct: 197 LVDPSFDEGNAAASSVTVISNADGTLSGMQKSGSSG-LKEAQIAEMVEIGIEKAGEIRK 254 >gi|57641568|ref|YP_184046.1| exosome complex RNA-binding protein Rrp42 [Thermococcus kodakarensis KOD1] gi|73919277|sp|Q5JIR7|ECX2_PYRKO RecName: Full=Probable exosome complex exonuclease 2 gi|57159892|dbj|BAD85822.1| exosome subunit Rrp42p homolog, 3'-5' exoribonuclease [Thermococcus kodakarensis KOD1] Length = 272 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 92/254 (36%), Gaps = 23/254 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR R++ + V + AEGS V+ GDT +L E P + G IT Sbjct: 24 RIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEP-FPDLPDRGVITT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 ++P ++ G + E+ R++ R +R VDL L R I Sbjct: 83 NVELVPLASPT-----FEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRVIF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165 ID V+ G A+ GA AL + + E+ L + ++ Sbjct: 138 IDVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYNEETGEVEILDEYEPLPVNHVPIPVT 197 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + +VD E+ +D ++GHI Q E F + L +A Sbjct: 198 FAKIGNSIVVDPSLDEERVMDGRLTITTDETGHISAAQK-GEAGAFKMEEVMYALEVALK 256 Query: 226 RIADLIKLQKDVIS 239 + ++ + + Sbjct: 257 KGNEIREKVLKAVG 270 >gi|18313177|ref|NP_559844.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum aerophilum str. IM2] gi|29336869|sp|Q8ZVN0|ECX2_PYRAE RecName: Full=Probable exosome complex exonuclease 2 gi|18160691|gb|AAL64026.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2] Length = 274 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 26/255 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR Q R + + V K A+GS VK G TH++ + P + G + Sbjct: 29 RVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQP-FPDAPDEGVLVV 87 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL-----GSRQIII 114 +LP ++ G + E+ R++ R +R VD L + + I Sbjct: 88 NAEVLPHASPY-----TEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWI 142 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164 D VI DG A + AL + + D +NK L + A+ Sbjct: 143 DLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKLDRNNKAPLPVDISKAPIAV 202 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 S G + +D + E+ ++D F ++ IV Q + F+Q A LNLA Sbjct: 203 SVGKIGNVLFLDPTFEEELSLDGRITFTFSED-KIVAAQKTL--GYFTQSEIEAALNLAL 259 Query: 225 DRIADLIKLQKDVIS 239 L++ K + Sbjct: 260 RGRDRLLEALKSALK 274 >gi|327400939|ref|YP_004341778.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6] gi|327316447|gb|AEA47063.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6] Length = 259 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 101/244 (41%), Gaps = 15/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++ R I + + AEGS LVK G+T ++ ++ P + G I Sbjct: 23 RIDGRKFDEFRHIEIETNIIAKAEGSALVKLGNTQVVVGVKMQPGEP-FPDAPDKGIIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113 ++P ++ G S E+ R++ R +R VDL+ L + I Sbjct: 82 NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLTKLCIEEGEKVWLIF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID + DG A+ A AL E ++ +++ ++ Sbjct: 137 IDIHALDDDGNLMDASSLAAIAALLTTTVPAERFDVGEDFPLPVRDLPISVTSLIVNNRI 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +VD E S + + +IV +Q S S++ F+ +++++ ++ ++ +L Sbjct: 197 LVDPSRDEVSVGEYFMTITTDQADNIVAMQKSG-SYLLSEEKFYELIDISIEKAREIREL 255 Query: 234 QKDV 237 KDV Sbjct: 256 LKDV 259 >gi|50550057|ref|XP_502501.1| YALI0D06776p [Yarrowia lipolytica] gi|49648369|emb|CAG80689.1| YALI0D06776p [Yarrowia lipolytica] Length = 287 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 21/242 (8%) Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59 +R GR+ N++R A+GS V++G T ++ T + T I Sbjct: 58 LRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVI 117 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + ST R+KR+ R R E+ +I + L V QI ++ VI Sbjct: 118 SVNVNVASFSTETRIKRQ----RNDKRLAEMNILIRQLLEEAVLTKLNPRTQIAVNITVI 173 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGG A I A +A+ D L +V+A S G+ ++DL+ Sbjct: 174 AQDGGLLPACINAACLAMIDAGV-------------PLTDYVSACSSGVYSNNALIDLNT 220 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + V+ S I + +L + + + + Sbjct: 221 LEEQDVPFLTIGVIGKSDKISMLTL---ETQLPMASLEPVLATSLSGAHAIQDIMDAAVR 277 Query: 240 NE 241 Sbjct: 278 KH 279 >gi|72012895|ref|XP_785829.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus purpuratus] gi|115926426|ref|XP_001179028.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus purpuratus] Length = 192 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 64/189 (33%), Gaps = 21/189 (11%) Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 I +Y M ST R R + S E+ + R + + QI I Sbjct: 14 DKVIINCQYSMATFSTNERKNRPQGDRK----STEMSLHLQRTFEATIQTHLYPRSQIDI 69 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++QADGG A + A +A+ + M K +V A S G + P+ Sbjct: 70 FVQILQADGGNYCACVNAATLAIINAGIPM-------------KDYVCACSSGYVNNTPL 116 Query: 175 VDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D+ Y E+S M S I + DH +L +A D+ + Sbjct: 117 TDVSYLEESQGGPVVTVAMLPKSEQIALFKMDNR---LHVDHLEQVLEVASKGCKDMYAV 173 Query: 234 QKDVISNEV 242 + V Sbjct: 174 MNAAVKEHV 182 >gi|288869793|ref|ZP_06409499.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii DSM 2374] gi|288860271|gb|EFC92569.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii DSM 2374] Length = 265 Score = 154 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 22/246 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++ R+IS+ V AEGS VK GDT ++ + P + G + Sbjct: 25 REDGRELDEYRDISIETGVISKAEGSARVKIGDTQVIVGIKPQIGAP-FPDTPDLGVLMT 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL------GSRQII 113 MLP + G S E+ R++ R +R +VDL L + Sbjct: 84 NCEMLPMADPT-----FEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF 138 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-------VLKGHVAAISC 166 ID +I G A AL ++ + + VA + Sbjct: 139 IDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTF 198 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + I+D E+ N +T G+I +Q +++ F ++ A + Sbjct: 199 VKIGDKLILDPTLNEEKVASARLNVGVTKDGNICAMQKGG-ILPLTKEDIFYCVDKAVSK 257 Query: 227 IADLIK 232 +L++ Sbjct: 258 TKELVE 263 >gi|14591332|ref|NP_143410.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus horikoshii OT3] gi|29336585|sp|O59224|ECX2_PYRHO RecName: Full=Probable exosome complex exonuclease 2 gi|3257977|dbj|BAA30660.1| 274aa long hypothetical autoantigen like protein [Pyrococcus horikoshii OT3] Length = 274 Score = 154 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 91/255 (35%), Gaps = 23/255 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R R I + + + AEGS LVK G T +L P + G +T Sbjct: 24 RIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGIKTTLGEP-FPDTPNMGVMTT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 ++P ++ G R+ E+ R+ R +R ++L + R + Sbjct: 83 NVELVPLASPT-----FEPGPPDERAIELARVTDRGIRESRALNLEKMVIVPGKIVRVVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--------KFQLSQVLKGHVAAIS 165 ID V+ DG A + AL + + + + + ++ ++ Sbjct: 138 IDVHVLDHDGNLMDAIGIASIAALLNAKVPKVEYNEETGEVEILEEKEPLPVERIPIPVT 197 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + +VD E+ +D ++GHI VQ E F + + A Sbjct: 198 FAKIGNILVVDPSLEEELVMDGRLTVTTDETGHISAVQK-GEGGAFKLEEVMYAVETAFK 256 Query: 226 RIADLIKLQKDVISN 240 + ++ K+ + I Sbjct: 257 KAEEIRKIVLEAIKK 271 >gi|73669985|ref|YP_306000.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina barkeri str. Fusaro] gi|72397147|gb|AAZ71420.1| ribosomal RNA-processing protein RRP42 [Methanosarcina barkeri str. Fusaro] Length = 260 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 91/245 (37%), Gaps = 15/245 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR R+I L V AEGS V GDT +L L+ P + + G I Sbjct: 22 RQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVGVKLQPGTP-FPDSQDEGVIIT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 + P ++ E G + E+ R++ R +R +D+ L Sbjct: 81 NLELNPIASP-----EFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCISVGESVWIAY 135 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ DG A+ A AL + E + +K ++ + Sbjct: 136 IDVHVLNDDGNIIDASSLAAIAALMTTIVPNEQHGIGADVPLAMKEMPVGVTLAKIGSKL 195 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +VD E + + V + G + +Q F++ +++A ++ A++ KL Sbjct: 196 MVDPSLDEGAVCETKLTVVSSSDGSVAGMQKMG-TVPFTEAEVLEAIDMACEKAAEIRKL 254 Query: 234 QKDVI 238 + + Sbjct: 255 YLEAL 259 >gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818] Length = 241 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 94/242 (38%), Gaps = 23/242 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ N++R + + +A+GS + GDT ++ ++ + G + Sbjct: 10 LREDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQ--GVGKAGDAGKVV 67 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ M ST R K R ++ E+ I S + QI I V+Q Sbjct: 68 CDFEMAAFSTTQRRK----PLRLDRKNAELGSKIASTFESAIMTDLYPRSQIEISVQVLQ 123 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGG AI +AL D M V A + ++ G ++D+++ Sbjct: 124 ADGGVLAVAINAVTLALMDAGVAM-------------TDFVCACTASVIDGTNVLDINHY 170 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E S + V+ S IV + ++ D + + +LA L+ L K + Sbjct: 171 EASAQGPELTIAVLPSSSTIVMAEM---KSRVHGDLYAGLQDLAIVGGTTLLPLLKKAVH 227 Query: 240 NE 241 + Sbjct: 228 DR 229 >gi|148642301|ref|YP_001272814.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter smithii ATCC 35061] gi|148551318|gb|ABQ86446.1| ribonuclease PH-related protein [Methanobrevibacter smithii ATCC 35061] Length = 262 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 22/246 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++ R+IS+ V AEGS VK GDT ++ + P + G + Sbjct: 22 REDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVGIKPQIGAP-FPDTPDLGVLMT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL------GSRQII 113 MLP + G S E+ R++ R +R +VDL L + Sbjct: 81 NCEMLPMADPT-----FEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF 135 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-------VLKGHVAAISC 166 ID +I G A AL ++ + + VA + Sbjct: 136 IDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTF 195 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + I+D E+ N +T G+I +Q + +++ F ++ A + Sbjct: 196 VKIGDKLILDPTLNEEKVASARLNVGVTKDGNICAMQKGG-ISPLTKEDIFYCVDKAVSK 254 Query: 227 IADLIK 232 +L++ Sbjct: 255 TKELVE 260 >gi|222444528|ref|ZP_03607043.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii DSM 2375] gi|222434093|gb|EEE41258.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii DSM 2375] Length = 265 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 22/246 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ ++ R+IS+ V AEGS VK GDT ++ + P + G + Sbjct: 25 REDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVGIKPQIGAP-FPDTPDLGVLMT 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL------GSRQII 113 MLP + G S E+ R++ R +R +VDL L + Sbjct: 84 NCEMLPMADPT-----FEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF 138 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-------VLKGHVAAISC 166 ID +I G A AL ++ + + VA + Sbjct: 139 IDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTF 198 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + I+D E+ N +T G+I +Q + +++ F ++ A + Sbjct: 199 VKIGDKLILDPTLNEEKVASARLNVGVTKDGNICAMQKGG-ISPLTKEDIFYCVDKAVSK 257 Query: 227 IADLIK 232 +L++ Sbjct: 258 TKELVE 263 >gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica] Length = 216 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 25/208 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHG 57 R GR+ + R+I V +A+GS +++ G+T +L + + + Sbjct: 9 FRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKC 68 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + EY ++ R +R R ++QEI + + + + + I I + Sbjct: 69 IVDVEYSRAAFASAERKRR----ARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVE 124 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI--- 174 V+QADGG + A +AL D ++ A+SCG+ + Sbjct: 125 VLQADGGDYAVCVNAATLALIDAGI-------------PIRDVCCAVSCGVAIKDNVAYS 171 Query: 175 -VDLDYGEDSTIDVDANFV-MTDSGHIV 200 +DL Y E+S M +G +V Sbjct: 172 LLDLAYSEESARIPTIVATGMPKTGEMV 199 >gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter thermautotrophicus str. Delta H] gi|29336572|sp|O26778|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2 gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 271 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 96/246 (39%), Gaps = 22/246 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ R+IS+ V AEGS VK G+T ++ + P + + G I Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 +LP ++ G RS E+ R++ R +R ++DL L + Sbjct: 84 NSELLPMASPT-----FEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLF 138 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK-------FQLSQVLKGHVAAISC 166 +D +I DG AA+ AL D + + + + Sbjct: 139 LDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTF 198 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ++D E+ + + +T+ G I +Q E ++D +++A ++ Sbjct: 199 AKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGE-GPLTRDDVLKAVSIAVEK 257 Query: 227 IADLIK 232 + LI+ Sbjct: 258 VPQLIE 263 >gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica] Length = 216 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 25/208 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHG 57 R GR+ + R+I V +A+GS +++ G+T +L + + + Sbjct: 9 FRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKC 68 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + EY ++ R +R R ++QEI + + + + + I I + Sbjct: 69 IVDVEYSRAAFASAERKRR----ARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVE 124 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI--- 174 V+QADGG + A +AL D ++ A+SCG+ + Sbjct: 125 VLQADGGDYAVCVNAATLALIDAGI-------------PIRDVCCAVSCGVAIKDNVAYS 171 Query: 175 -VDLDYGEDSTIDVDANFV-MTDSGHIV 200 +DL Y E+S M +G +V Sbjct: 172 LLDLAYSEESARIPTIVATGMPKTGEMV 199 >gi|299470099|emb|CBN78128.1| conserved unknown protein [Ectocarpus siliculosus] Length = 270 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 20/240 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWIT 60 R GR MR++ + V +A GS V+F T ++ ++ G + Sbjct: 43 REDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQ 102 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ P + +RE G++ +E+ ++ + L S + + L + + V+Q Sbjct: 103 CDFSYAPFAMPG-GRRETRGGKKDD-ERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQ 160 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADGG A T A +AL D + D V A S G ++D Sbjct: 161 ADGGELAVATTCASMALADAGIELYDL-------------VTACSVGYCGTQMVLDPTKE 207 Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + M S + Q E F L L D + K+ + + Sbjct: 208 EEKSGAGVMTIALMPGSQQVT--QWWQEGR-FDGQKVAEALELCTDGCGCVHKMMEAKLK 264 >gi|52548653|gb|AAU82502.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos18B6] Length = 238 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 17/238 (7%) Query: 5 GR--QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62 GR + R+I + R + K AEGS V+ GDT +L +E P + G + Sbjct: 2 GRWARILDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGAP-FPDTPNKGVLMTN 60 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QIII 114 ++P ++ E SG G S E+ R++ R +R +DL L G + I I Sbjct: 61 AELVPLASP-----EFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIFI 115 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 D + DG AA GA ++L + E + + ++ A++ + G + Sbjct: 116 DIHTLDNDGNLVDAAALGAIMSLLNVTIPYEQYGLTGEDTLQIRDTPVAVTVVEIGGNLL 175 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 VD + E+S + G I +Q S +++ M + ++ ++ + Sbjct: 176 VDPNVYEESAATSKLTVISNADGSISGLQKSGSSG-LTEEKIVKMTEIGIEKAREIRE 232 >gi|284161629|ref|YP_003400252.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631] gi|284011626|gb|ADB57579.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631] Length = 259 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 15/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R I + + K AEGS VK G+T ++ ++ P + G I Sbjct: 23 RIDGRAFDEIRPIEIKTGLIKKAEGSAYVKLGNTQVVAGVKMQIGEP-FPDTPDQGIIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113 ++P ++ G + E+ R++ R +R VDL L + I Sbjct: 82 NAELVPLASPT-----FEPGPPDENAIELARVVDRGIRHSEAVDLKKLCIEEGEKVWIIF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID + DG A+ A AL + E ++ AI+ + Sbjct: 137 IDIWALDDDGNLMDASALAAIAALLNTTVPAERFEVGDDFPLPVRDLPVAITSLVYDDKI 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +VD E S + +IV +Q S S+ F +L ++ + ++ KL Sbjct: 197 LVDPCRDELSVGKNTITITTDQNDNIVSIQKSG-PFLLSEKAFEEVLEVSIRKAREVRKL 255 Query: 234 QKDV 237 DV Sbjct: 256 LADV 259 >gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted) [Schizosaccharomyces pombe 972h-] gi|21759394|sp|O42872|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName: Full=Ribosomal RNA-processing protein 41 gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted) [Schizosaccharomyces pombe] Length = 242 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 21/241 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59 +R GR+ ++MR + GS ++ G+T +L E V ++ Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E + ST + KR + R Q + ++ QI + V+ Sbjct: 72 NVEINIASFSTIDVKKR----FKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q DG + I +AL D +K V + G++ ++DL+ Sbjct: 128 QDDGAVMASCINATTLALIDAGI-------------PVKDFVCCSTAGIVESDMLLDLNS 174 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+S + V+ + +V +Q + D+ +++N+A + + + Sbjct: 175 LEESALSWLTVAVLGNIKKVVYMQL---ETSMHLDYLESVMNMAIAGSEHIYNTMQSAVR 231 Query: 240 N 240 Sbjct: 232 Q 232 >gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis str. Marburg] gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter marburgensis str. Marburg] Length = 267 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 22/246 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ R+IS+ V AEGS VK G+T ++ + P + + G I Sbjct: 21 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 79 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 +LP ++ G RS E+ R++ R +R ++DL L + Sbjct: 80 NSELLPMASPT-----FEPGPPDERSVELSRVVDRCVRESQMIDLEKLCIIEGSKVWMLF 134 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------SQVLKGHVAAISC 166 +D +I DG AA+ AL D + + L + + Sbjct: 135 LDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVLVDRENMQPLPINRKALMCTF 194 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + I+D E+ + + +T+ G I +Q E A ++D +++A+++ Sbjct: 195 AKIGDEIILDPCLEEEDILTARLSIGVTEDGSICAMQKGGEGA-LTRDDVLRAVSIAREK 253 Query: 227 IADLIK 232 + LI+ Sbjct: 254 VPQLIE 259 >gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe] Length = 242 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 21/241 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59 +R GR+ ++MR + GS ++ G+T +L E V ++ Sbjct: 12 LRNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E + ST + KR + R Q + ++ QI + V+ Sbjct: 72 NVEINIASFSTIDVKKR----FKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q DG + I +AL D +K V + G++ ++DL+ Sbjct: 128 QDDGAVMASCINATTLALIDAGI-------------PVKDFVCCSTAGIVESDMLLDLNS 174 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+S + V+ + +V +Q + D+ +++N+A + + + Sbjct: 175 LEESALSWLTVAVLGNIKKVVYMQL---ETSMHLDYLESVMNMAIAGSEHIYNTMQSAVR 231 Query: 240 N 240 Sbjct: 232 Q 232 >gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri AV19] gi|29336820|sp|Q8TYC2|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2 gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to RNase PH [Methanopyrus kandleri AV19] Length = 267 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 97/252 (38%), Gaps = 22/252 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + R I + V A GS LV+ G+T L+ LE P + + G + Sbjct: 23 RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRP-YPDSPNEGALAV 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113 ++P + + G + E+ R++ R +R ++DL L + Sbjct: 82 NAELVPLADPS-----FEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHM-------EDCSNKFQLSQVLKGHVAAISC 166 +D V+ DG A++ G+ AL + + + +++ Sbjct: 137 VDIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDDEVEVMEEDTEPLAINDFPISVTI 196 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + Y +VD E+ +D +T+SG + VQ E F + ++LA + Sbjct: 197 AKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDFPEHLLEDAIDLATKK 255 Query: 227 IADLIKLQKDVI 238 ++ + K + Sbjct: 256 AEEVRRTVKAQL 267 >gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo laibachii Nc14] Length = 261 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--------PMWIR 52 +RL GR+E + R + V A+GS ++ G+T +L +V Sbjct: 18 LRLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVVYGPREVDGTTLKNAKGAAS 77 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K + E +T +R S R+ E+ I + S + + QI Sbjct: 78 LVKKAIVHCECTQASFATSDRKVSRNASDRKN---VEMSSAIKQIFESCIFTNLYPQSQI 134 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 I V+QADGG A+I +AL D + D V A + G + Sbjct: 135 SIYPQVLQADGGELAASINATSLALMDAGIALND-------------FVVASTAGFVQQK 181 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + DL+ E + + V A + + F +++ +A + + Sbjct: 182 SLCDLNAFEQAARGPQITVAINPRSR--HVNYLKMEAKLALEVFESVMGMAINGCDRIGD 239 Query: 233 LQKDVISN 240 + V+ Sbjct: 240 SLQQVVRG 247 >gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome [Pichia pastoris GS115] gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome [Pichia pastoris GS115] gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Pichia pastoris CBS 7435] Length = 246 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 21/242 (8%) Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59 +R+ GR+ N++R A+GS V+ G+T ++ + NT+ G + Sbjct: 9 LRVDGRRWNELRRFYCRINTHPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKGSL 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + P ST R K R R QE+ ++ VV L I ++ V+ Sbjct: 69 DIKLHVSPFSTTERRKVT----RNDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVRVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DGG A +AL D + D +++A+S G+ ++DL+ Sbjct: 125 AQDGGLLAACCNAITLALVDAGIALYD-------------YISAVSAGVFDNQILLDLNR 171 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+ + V+ + + V QD + +A + L ++ Sbjct: 172 LEEQDLSSVTIGVVGKTKKLSLV---LSETRLPQDRLAKVFEVAVNGCHQLKDQMDAQVA 228 Query: 240 NE 241 + Sbjct: 229 KK 230 >gi|213854161|ref|ZP_03382693.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 86 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 51/86 (59%), Positives = 65/86 (75%) Query: 7 QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66 NQ+R ++LTR +K+AEGS LV+FGDT +L TA++EE VP +++ GWITAEYGML Sbjct: 1 SNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGML 60 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQR 92 PRST R REA G+QGGR+ EIQR Sbjct: 61 PRSTHTRNAREAAKGKQGGRTMEIQR 86 >gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1] Length = 1336 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 22/216 (10%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWITAEYGMLP 67 +++R + V + A+GS V+ G+T +L + H ++ E+ Sbjct: 38 DELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYAS 97 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 ST R R + + + I R L SVV L I ++ V+QADGG Sbjct: 98 FSTDQRRARSRLDRKLAEQGTRIA----RTLESVVMGQLLSRSTINLNVQVLQADGGVLA 153 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI A +A+ D M K + A + G+L G ++D ++ E Sbjct: 154 TAINAASLAMMDAGVPM-------------KDFLCACNAGVLEGVAVLDTNHSEALARGP 200 Query: 188 DANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222 D VM + IV Q + F L L Sbjct: 201 DLTVAVMPRTNTIVLNQDEKRQTNF---ELTMALKL 233 >gi|48477465|ref|YP_023171.1| exosome complex RNA-binding protein Rrp42 [Picrophilus torridus DSM 9790] gi|48430113|gb|AAT42978.1| ribonuclease PH [Picrophilus torridus DSM 9790] Length = 260 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 16/232 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR N R+I + A GS +V+ G T ++ +EE P + G + Sbjct: 26 RLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGVKIEEGEP-FPDTPDQGVMAL 84 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL------GSRQII 113 MLP + +G G + E R++ R +R ++D++ L + Sbjct: 85 NIEMLPMAFPT-----FEAGPPGEEAIEYSRVVDRGIRESKMIDVTRLVIEPGTKVWMVF 139 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID D+I G A+ A AL + + + + + +++ + Sbjct: 140 IDIDIINYAGNIIDASTIAAVAALRNAIVPASRIGGE-DFKLPVNANPVSVTMAKIGDEL 198 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ++D D E+ + M + HI +Q + F+ + + ++D Sbjct: 199 VIDPDLEEEQVSNGRITITMAEDDHIHAIQK-GDVGEFTMEDIRKAIKASRD 249 >gi|320101498|ref|YP_004177090.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM 2162] gi|319753850|gb|ADV65608.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM 2162] Length = 286 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR R + + + A GS LV+ G T ++ LE P + G + Sbjct: 28 RIDGRGLYDYRPLEVVLNPIQKASGSSLVRLGGTQVIAGVKLELGEP-FPDRPNEGVLQV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQIII-- 114 +P ++ + G S EI R+I R+LR V L L + + + Sbjct: 87 HAEFVPLASPS-----FEPGPPDENSIEIARIIDRSLREPKAVKLDTLVVEPGKVVWVVF 141 Query: 115 -DCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAIS 165 D ++ G A++ + +AL + K + V ++ Sbjct: 142 DDIYLVDHQGNITDASMMASMLALATARIPGLVKTETGYRVDNTKQTGPLPINTLVVTVT 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 G+ +VD E++ +D + ++G I VQ + FS++ +N A Sbjct: 202 MGIYGDTIVVDPSLEEEAVLDSFLTIAVDEAGRICGVQKRGMKG-FSRNTLENAVNTALS 260 Query: 226 RIADLIKLQKDVISNE 241 + DLI+L + +++N Sbjct: 261 KGRDLIELLRKILNNP 276 >gi|119719493|ref|YP_919988.1| exosome complex RNA-binding protein Rrp42 [Thermofilum pendens Hrk 5] gi|119524613|gb|ABL77985.1| ribosomal RNA-processing protein RRP42 [Thermofilum pendens Hrk 5] Length = 272 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 94/254 (37%), Gaps = 21/254 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR+ +Q REI L + + A+GS V G T ++ L P + G Sbjct: 25 RLDGRKADQYREIRLEKGIIGKADGSARVFLGSTQVIAGVKLAIGTP-FPDAPNEGVQIV 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 + P ++ G G E+ R++ R RS VVDL+ L + Sbjct: 84 NAELSPVASPF-----FEPGPPGEEDIELARVVDRGFRSAKVVDLAKLSIIPSAKCWTLY 138 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------SQVLKGHVAAISCG 167 ID + DG AA A +AL D + V ++ Sbjct: 139 IDIYPLDHDGNLVDAAGLAALLALLDTKLPRTSVQENKIAVLDEKDPLPINTLVVYVTVA 198 Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + Y +VD E+ T D F +T+ G I +Q S E +F D ++A Sbjct: 199 KIGEYLVVDPTLEEELTADAKITFGITERGEICAIQKSGE-GSFRPDEVLRARDMALKAS 257 Query: 228 ADLIKLQKDVISNE 241 + L + K + + Sbjct: 258 STLFEAIKKAVEQK 271 >gi|119872347|ref|YP_930354.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum islandicum DSM 4184] gi|119673755|gb|ABL88011.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum islandicum DSM 4184] Length = 274 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 101/254 (39%), Gaps = 25/254 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++R I + V K A+GS VK G TH++ + P + G + Sbjct: 29 RIDGREPERIRNIEIKTSVIKTADGSAEVKLGKTHVVAGVKVSLGQP-FPDAPDEGVLVV 87 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL-----GSRQIII 114 +LP ++ G + E+ R+I R +R VD L + + + Sbjct: 88 NAEVLPHASPY-----TEVGPPDEFAIELARVIDRGIRHCGYVDFKKLVVEGGKAYVLWV 142 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAIS 165 D VI DG AA A AL D + D +NK L + A+S Sbjct: 143 DLYVINDDGNLIDAANLAAVAALKDTQLPVVVKDEQGVKLDRNNKTPLPIEVSKAPIAVS 202 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 G + G +D + E+ ++D F +++ IV VQ + TF+ L LA Sbjct: 203 VGKIGGVLFLDPTFEEELSLDGRITFTISED-RIVAVQKT--IGTFTSQELEMALELAWK 259 Query: 226 RIADLIKLQKDVIS 239 LI + V+ Sbjct: 260 GKEQLITAARGVLG 273 >gi|91772268|ref|YP_564960.1| exosome complex RNA-binding protein Rrp42 [Methanococcoides burtonii DSM 6242] gi|91711283|gb|ABE51210.1| Archaeal exosome complex exoribonuclease [Methanococcoides burtonii DSM 6242] Length = 259 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 15/225 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++ R++ + V AEGS V GDT +L L+ P + + G I Sbjct: 22 REDGRGFDETRDLIIETNVIDKAEGSAKVLLGDTQVLVGVKLQVGSP-FADSADKGVIIT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113 + P ++ N +G ++ E+ R++ R +R +DL+ L + + Sbjct: 81 SMELNPIASPN-----FEAGPPREKAIEMARVVDRGIRESGAIDLNKLCITEGEEVWIVF 135 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ G AA GA AL E + ++ ++S + G Sbjct: 136 IDVHVLNDSGNLLDAASLGAIAALMTATIPGEREGRGEDVKLPIREMPVSLSFIDIGGEL 195 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218 ++D E+S D+ V G I +Q S T S+++F Sbjct: 196 VIDATNNEESVSDLRLTIVTNQDGSICAMQKSG-PGTLSEENFLR 239 >gi|52550471|gb|AAU84320.1| 3'-5' exoribonuclease [uncultured archaeon GZfos9D1] Length = 257 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 15/237 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + REIS+ R V K AEGS VK GDT +L +E P + G I Sbjct: 23 REDGRGFREYREISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 ++P ++ SG S ++ R++ R +R +DL L G + + Sbjct: 82 NAELVPLASPK-----FESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEKGEKVWMVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ +G AA GA +L + E + + ++ A++ + G Sbjct: 137 IDIHVLDDNGNLADAAALGAIASLLNLRIPNERYGLTGENTLPMRDTPVAVTTVEIEGNI 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +VD + E + + G + +Q S + M+ + ++ ++ Sbjct: 197 LVDPSFDEGNAAASSVTVISNADGTLSGMQKSGSGG-LKEAQIAEMVEIGIEKAGEI 252 >gi|288560608|ref|YP_003424094.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter ruminantium M1] gi|288543318|gb|ADC47202.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter ruminantium M1] Length = 263 Score = 147 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 89/240 (37%), Gaps = 23/240 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR ++ R+I + V AEGS VK GDT ++ P + G + Sbjct: 21 RADGRAFDERRDIFIEPNVIDKAEGSARVKLGDTQVIVGVKPTIGEP-FADTPNLGVLMT 79 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113 +LP + G S E+ R++ R +R +VDL L + Sbjct: 80 NCELLPMAAPG-----FEPGPPSPESIELARVVDRGIRESELVDLEKLCIEEGKKVWMLF 134 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGHVAAISC 166 ID VI DG A AL + + + S + ++ +A + Sbjct: 135 IDLHVIDYDGNLFDCANLAVMSALLNTKLPVAEYIDDEVVLSEDETMDLPVRDKLALSTF 194 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKD 225 + I+D E+ +D +TD G HI +Q E ++D ++LA + Sbjct: 195 VKIGNGLILDPSLEEEEILDARITIGVTDEGNHICSMQKGGEE-PLTRDDILDAVHLAFE 253 >gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1] Length = 240 Score = 147 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 93/243 (38%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58 +R+ GR+ N++R + +GS V+ G+T ++ T E ++++ Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN 68 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I + ST R KR R R E++ + + V ++ I+I+ V Sbjct: 69 IEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQV 124 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + DGG A I +AL D M D +V+ +SCG+ P++D++ Sbjct: 125 LCQDGGMLAAVINSITLALIDAGISMYD-------------YVSGVSCGVYDQTPLLDVN 171 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+ + V+ S + + D ++L++ + +L + Sbjct: 172 NLEEHDMSCLTVGVIGKSEKLALMLL---EDKMPLDRLESVLSIGIAGSHKIRELMDQEV 228 Query: 239 SNE 241 Sbjct: 229 RKH 231 >gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314] gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314] gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314] gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314] Length = 240 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 93/243 (38%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58 +R+ GR+ N++R + +GS V+ G+T ++ T E ++++ Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN 68 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I + ST R KR R R E++ + + V ++ I+I+ V Sbjct: 69 IEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQV 124 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + DGG A I +AL D M D +V+ +SCG+ P++D++ Sbjct: 125 LCQDGGMLAAVINSITLALIDAGISMYD-------------YVSGVSCGLYDQTPLLDVN 171 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+ + V+ S + + D ++L++ + +L + Sbjct: 172 NLEEHDMSCLTVGVIGKSEKLALMLL---EDKMPLDRLESVLSIGIAGSHKIRELMDQEV 228 Query: 239 SNE 241 Sbjct: 229 RKH 231 >gi|126465759|ref|YP_001040868.1| exosome complex RNA-binding protein Rrp42 [Staphylothermus marinus F1] gi|126014582|gb|ABN69960.1| ribosomal RNA-processing protein RRP42 [Staphylothermus marinus F1] Length = 285 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 24/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++ R I + AEGS VK G+T ++T LE P R G + Sbjct: 28 RIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGNTFVITGVKLEIGTPYSDR-PNEGVLQV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQIII-- 114 +P ++ G + E R+I R+LR + L L +++ + Sbjct: 87 HAEFVPLASPT-----FEPGPPDENAIETARVIDRSLREPRAIRLEDLVVIPGKKVWLIF 141 Query: 115 -DCDVIQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 D +I G + +AL+ + + L +V + Sbjct: 142 NDLYLIDHYGNIVDTGMLSTMLALNMTKIPRIVSIEDENVVIDKTVKEAPLPLNLNVVTV 201 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + G++ IVD + E+ +D F + ++ IV +Q + ++++A Sbjct: 202 TLGIIDDVIIVDPNIEEELVVDSRITFAVDETNRIVGIQKMGMKG-IKPKMIDQLVDIAL 260 Query: 225 DRIADLIKLQKDVISNE 241 + ++L L ++V++N Sbjct: 261 KKASELHSLLREVLNNP 277 >gi|254168333|ref|ZP_04875178.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum boonei T469] gi|197622614|gb|EDY35184.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum boonei T469] Length = 226 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 14/203 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R +++T+ AEGS LV G+T +L +E P + G +T Sbjct: 28 RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113 + P ++ G G + E+ R++ R +R +DL L G + + Sbjct: 87 NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V+ DG AA GA AL + ++ + ++ + + Sbjct: 142 IDIHVLDYDGNLFDAAGYGALAALTNATVPASRYDLGEDFKLPVQHYPVPVTFAKIGDWI 201 Query: 174 IVDLDYGEDSTIDVDANFVMTDS 196 + D + E+S + Sbjct: 202 VADPNLDEESIASARLTVATNEE 224 >gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL YB-4239] gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL YB-4239] Length = 244 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 22/236 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58 +R+ GR+ N++R + +GS V+ G+T ++ T E N Sbjct: 12 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVICTVIGPMEPTSRAQMNQDRAN 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + + ST R KR + R E++ + R ++ L I I+ V Sbjct: 72 VEVNLTIANFSTFERKKR----SKTEKRLVELRTTLERTFEQLILLHLYPRTNITINVQV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + DGG A +AL D M D +V++ISCG+ P++DL+ Sbjct: 128 LNQDGGMLAAVTNSITLALMDAGIAMYD-------------YVSSISCGLHDQSPLLDLN 174 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 E++ + V+ S + + D+ +L +A + L Sbjct: 175 NLEENDMSCLTIGVIGKSEKLALLML---EDKMPLDNLEKVLGIAIAGSHRIKDLM 227 >gi|332157778|ref|YP_004423057.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2] gi|331033241|gb|AEC51053.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2] Length = 274 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 99/255 (38%), Gaps = 23/255 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R R IS+ + + AEGS LVK G+T +L P + G +T Sbjct: 24 RIDDRGFEDYRPISIEVGIIEKAEGSALVKIGNTQVLVGIKTTLGEP-FPDTPNMGVMTT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 ++P ++ G R+ E+ R+I R +R ++L + R + Sbjct: 83 NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESRALNLEKMVIVPGKIVRVVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNK----FQLSQVLKGHVAAIS 165 ID V+ DG A A AL + +++ E+ + ++ ++ Sbjct: 138 IDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVEVLEEKEPLPVEKIPVPVT 197 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + +VD E+ ++ ++GHI VQ S E F + +++A Sbjct: 198 FAKIGNILVVDPSLDEELVMEGRLTITTDETGHISAVQKS-EGGAFKLEEVMYAVDVAFK 256 Query: 226 RIADLIKLQKDVISN 240 + ++ K+ + + Sbjct: 257 KAEEIRKMIIEAVKG 271 >gi|170292235|pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp gi|170292237|pdb|2PO0|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Adp In Double Conformation gi|170292240|pdb|2PO1|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With A Single Stranded 10-Mer Poly(A) Rna gi|170292242|pdb|2PO2|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Cdp Length = 277 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 23/255 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R R I + V + AEGS LVK G T +L P + G +T Sbjct: 27 RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEP-FPDTPNMGVMTT 85 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 ++P ++ G R+ E+ R+I R +R ++L + R + Sbjct: 86 NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVF 140 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165 ID V+ DG A A AL + +++ E+ L ++ ++ Sbjct: 141 IDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVT 200 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + +VD E+ +D ++GHI VQ S E F + + A Sbjct: 201 FAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKS-EGGAFKLEEVMYAVETAFK 259 Query: 226 RIADLIKLQKDVISN 240 + ++ KL + + Sbjct: 260 KAEEIRKLILEAVEK 274 >gi|14520827|ref|NP_126302.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi GE5] gi|29337009|sp|Q9V118|ECX2_PYRAB RecName: Full=Probable exosome complex exonuclease 2 gi|5458043|emb|CAB49533.1| RNAse PH-related exoribonuclease [Pyrococcus abyssi GE5] Length = 274 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 23/255 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R R I + V + AEGS LVK G T +L P + G +T Sbjct: 24 RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEP-FPDTPNMGVMTT 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 ++P ++ G R+ E+ R+I R +R ++L + R + Sbjct: 83 NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165 ID V+ DG A A AL + +++ E+ L ++ ++ Sbjct: 138 IDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVT 197 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + +VD E+ +D ++GHI VQ S E F + + A Sbjct: 198 FAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKS-EGGAFKLEEVMYAVETAFK 256 Query: 226 RIADLIKLQKDVISN 240 + ++ KL + + Sbjct: 257 KAEEIRKLILEAVEK 271 >gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa] gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa] Length = 257 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 82/241 (34%), Gaps = 25/241 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q R A GS +FG+T ++ + + + + G + Sbjct: 34 LRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLN 93 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +T R G ++E M+ +AL + L + + V++ Sbjct: 94 CNVSCTTFATPARG--------LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLE 145 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 + G I+ A +AL D M D VA +S L I+D Sbjct: 146 SGGSDLPVVISCASLALADAGIMMYDL-------------VAGVSVSCLGRNLIIDPILE 192 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+S D M + ++ + E +S + L D + L K+ + + Sbjct: 193 EESFQDGSLMITCMPSRYEVTQLSITGE---WSTAKLNEAMQLCLDACSKLDKIMRACLK 249 Query: 240 N 240 Sbjct: 250 E 250 >gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides] Length = 257 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 83/241 (34%), Gaps = 25/241 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q R A GS +FG+T ++ + + + + G + Sbjct: 34 LRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLN 93 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +T R G ++E M+ +AL + L + + V++ Sbjct: 94 CNVSCTTFATPARG--------LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLE 145 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 + G I+ A +AL D M D VA +S L I+D Sbjct: 146 SGGSDLPVVISCASLALADAGIMMYDL-------------VAGVSVSCLGRNLIIDPILE 192 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+S D M + ++ + E +S ++L D + L K+ + + Sbjct: 193 EESFQDGSLMITCMPSRYEVTQLSITGE---WSTAKLNEAMHLCLDACSKLDKIMRACLK 249 Query: 240 N 240 Sbjct: 250 E 250 >gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex exonuclease, putative; ribosomal RNA processing protein, putative [Candida dubliniensis CD36] gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida dubliniensis CD36] Length = 240 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 92/243 (37%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58 +R+ GR+ N++R + +GS V+ G+T ++ T E ++++ Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPTLRSQQHSERAN 68 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I + ST R KR R R E++ + + V ++ I+I+ V Sbjct: 69 IEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQV 124 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + DGG I +AL D M D +V+ +SCG+ P++D++ Sbjct: 125 LCQDGGMLATIINSITLALIDAGISMYD-------------YVSGVSCGLYDQTPLLDVN 171 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+ + V+ S + + D ++L++ + +L + Sbjct: 172 NLEEHDMSCLTIGVIGKSEKLALLLL---EDKMPLDRLESVLSIGIAGSHKIRELMDQEV 228 Query: 239 SNE 241 Sbjct: 229 RKH 231 >gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66] gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris RN66] Length = 250 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 101/245 (41%), Gaps = 25/245 (10%) Query: 1 MRLSGRQENQMREI--SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 R+ GR+ N++R I ++ S ++ S + G T L+T+ +P+ +++ G Sbjct: 16 FRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITSICGP--IPLLNSSSQSGI 73 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + M P T +R KR G+ E +I R S + QIII+ + Sbjct: 74 QLHCNFRMSPFCTPDRRKR----GKNDRFCTENSLIITRTFESAIS-EIYVKSQIIININ 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++ADGG R+AAI +AL + M+D V + + G+ P+ D+ Sbjct: 129 VLEADGGVRSAAINATSLALANAGIGMKDL-------------VISSTIGLYGRIPLYDI 175 Query: 178 DYGEDSTIDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E + +F + + I + +D +L + + K+ ++ Sbjct: 176 VQAEFDVLKTIMSFAIYSTDENIAPITMEL-NTKVDEDILNLLLEHSAAACKHISKILRN 234 Query: 237 VISNE 241 ++ Sbjct: 235 ILRQH 239 >gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa] Length = 257 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 81/241 (33%), Gaps = 25/241 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR Q R A GS +FG+T ++ + + + + G + Sbjct: 34 LRPDGRDFQQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLN 93 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +T R G ++E M+ +AL + L + + V++ Sbjct: 94 CNVSCTTFATPARG--------LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLE 145 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 + G I+ A +AL D M D VA +S L I+D Sbjct: 146 SGGSDLPVVISCASLALADAGIMMYDL-------------VAGVSVSCLGRNLIIDPILE 192 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+S D M + ++ + E +S + L D + L K+ + + Sbjct: 193 EESFQDGSLMITCMPSRYEVTQLSITGE---WSTAKLNEAMQLCLDACSKLDKIMRACLK 249 Query: 240 N 240 Sbjct: 250 E 250 >gi|218884634|ref|YP_002429016.1| exosome complex RNA-binding protein Rrp42 [Desulfurococcus kamchatkensis 1221n] gi|218766250|gb|ACL11649.1| Probable exosome complex exonuclease 2 [Desulfurococcus kamchatkensis 1221n] Length = 286 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 96/256 (37%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR R I + A GS LVK G T ++ LE + P + G + Sbjct: 28 RIDGRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEP-FPDRPGEGVLQV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQII--- 113 +P ++ + G + E+ R+I R+LR V L AL + + Sbjct: 87 HAEFVPLASPS-----FEPGPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIVWSVY 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--------KFQLSQVLKGHVAAIS 165 D ++ G + + +AL K+ + VA ++ Sbjct: 142 TDIYLVDHQGNIIDTGMLASMLALATSRIPELIKGENGYKVDHTKYVGPLPINTLVATVT 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 G+ IVD E++ ID + +SG I +Q + FS+ + +A Sbjct: 202 MGIYNDVIIVDPLLEEEAVIDSFITIAIDESGRICGIQKRGMKG-FSRSVLDNTIEIALS 260 Query: 226 RIADLIKLQKDVISNE 241 + +L+ L K +++N Sbjct: 261 KGRELVDLMKKILNNP 276 >gi|315427142|dbj|BAJ48757.1| exosome complex component RRP42 [Candidatus Caldiarchaeum subterraneum] gi|315427161|dbj|BAJ48775.1| exosome complex component RRP42 [Candidatus Caldiarchaeum subterraneum] Length = 271 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 90/240 (37%), Gaps = 22/240 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R+ Q R+I + V + A GS LV G T +LT +E P + G T Sbjct: 24 RIDEREPLQYRKIEIATNVVEKAHGSALVSLGKTKILTGIKVEVGTP-YPDRPNEGVFTV 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 +LP ++ G R+ E+ R++ R +R +++ L I Sbjct: 83 NAELLPLASKT-----FEPGPPDERAIELSRIVDRVIRESKAIEVEKLCIVEGQKVYMIF 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHM-------EDCSNKFQLSQVLKGHVAAISC 166 IDC V+ DG A++ A AL + + ++ ++ +++ Sbjct: 138 IDCYVLDYDGNYFDASVLSAVAALRTMTLPVYRVVDGRVEAVPGEKMKLPMRTLPVSVTM 197 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ++ IVD E+ D G + +Q S+ + F M+ + D Sbjct: 198 ALIRDKIIVDPLPAEEDVADTVVTIGYDSDGVLSAIQKSS-PGLLPVNMFKEMVKIGLDA 256 >gi|11498105|ref|NP_069330.1| exosome complex RNA-binding protein Rrp42 [Archaeoglobus fulgidus DSM 4304] gi|29336575|sp|O29756|ECX2_ARCFU RecName: Full=Probable exosome complex exonuclease 2 gi|83754328|pdb|2BA0|I Chain I, Archaeal Exosome Core gi|83754329|pdb|2BA0|H Chain H, Archaeal Exosome Core gi|83754330|pdb|2BA0|G Chain G, Archaeal Exosome Core gi|83754337|pdb|2BA1|G Chain G, Archaeal Exosome Core gi|83754338|pdb|2BA1|H Chain H, Archaeal Exosome Core gi|83754339|pdb|2BA1|I Chain I, Archaeal Exosome Core gi|295322010|pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322011|pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|295322012|pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site gi|2650132|gb|AAB90743.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 259 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 15/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ R++ + V + AEGS LVK GDT ++ ++ P + G I Sbjct: 23 RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEP-YPDTPDRGVIIV 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQ--II 113 ++P ++ G S E+ R++ R +R VDLS L G + + Sbjct: 82 NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 +D + DG A+ A AL + E ++ +++ ++ Sbjct: 137 VDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIVGNKY 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +VD E S D ++V +Q S + F +L+++ + L + Sbjct: 197 LVDPSREEMSVGDTTLTITTDKDDNVVAMQKSG-GYLLDEKLFDELLDVSINCARKLREK 255 Query: 234 QKD 236 K+ Sbjct: 256 FKE 258 >gi|305663899|ref|YP_003860187.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230] gi|304378468|gb|ADM28307.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230] Length = 286 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 94/252 (37%), Gaps = 26/252 (10%) Query: 3 LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62 + R R + ++ A+ S L K G+T +L LE P + + G + Sbjct: 28 VDRRPLTSYRSFEVKFNIAPNADSSVLFKLGNTQILAGVKLEVGQP-FPDSPNEGILIVN 86 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--III 114 LP ++ G + E+ R+I R LR V+ L L G R + + Sbjct: 87 AEYLPAASPT-----FEPGPPDENAIELARVIDRGLREAKVIALDKLVIVPGKRVWIVWL 141 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDC----------SNKFQLSQVLKGHVAAI 164 D ++ DG A+ + +AL + + L +V ++ Sbjct: 142 DIYILDHDGNLIDASAMASMLALATTFIPYYEVDPLTSNVKIDRTRKLQRLPLNRYVVSV 201 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + + ++D E++ +++ G+IV +Q ++D +++A Sbjct: 202 TVNKIGDLLVIDPTGEEEAIASSKLAISISEEGNIVGIQKMG-IGYVTEDDINKAIDIAL 260 Query: 225 D-RIADLIKLQK 235 I ++ KL+K Sbjct: 261 SIGIDNIEKLKK 272 >gi|255082324|ref|XP_002504148.1| predicted protein [Micromonas sp. RCC299] gi|226519416|gb|ACO65406.1| predicted protein [Micromonas sp. RCC299] Length = 261 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 22/238 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR+ + R + ++GS + + G+T +L + R + Sbjct: 9 LRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSERLEDRLLV 68 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 E M STG R +R R + E+ + R + + V L Q+ + V+ Sbjct: 69 KCEVSMAAFSTGERRRRTKGDRR----TNELSTFVRRCIETCVSAELLARSQLDVSIQVL 124 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 QADGG R AA+ A +A+ D M+D +A S G L P++DL+Y Sbjct: 125 QADGGVRAAAVNAAVLAIVDAGIPMQDT-------------MACCSAGYLDDTPLLDLNY 171 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E+ + + M +V + + S D F LA D KL ++ Sbjct: 172 MEEGGGGPEVHVAYMPQMDRVVAIVTENKA---SVDVFERAHELALDGCRVASKLMRE 226 >gi|291000756|ref|XP_002682945.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria gruberi] gi|284096573|gb|EFC50201.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria gruberi] Length = 300 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 22/245 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWIT 60 R R ++ R + + V K A GS +++ + T ++ + ++ + G I Sbjct: 65 RQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGAIQ 124 Query: 61 AEYGMLPRSTGNRVKREA----VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 EY + + + + S E + AL + L I + C Sbjct: 125 CEYRVANFAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVIDVYC 184 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++Q DG +AAI+ A +AL + M D V+A + L G+ IVD Sbjct: 185 FILQDDGSALSAAISCASLALANAGIEMYD-------------MVSACTTSELEGHIIVD 231 Query: 177 LDYGEDSTI-DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 E M++ + ++ ++ S ++L D + L +L + Sbjct: 232 PTNLEYKYASGGMVCAYMSNLNQVTQL---SQVGDMSYQKIGEAMDLCIDGCSKLNQLMQ 288 Query: 236 DVISN 240 + N Sbjct: 289 QCLLN 293 >gi|295322022|pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site gi|295322023|pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site gi|295322024|pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site Length = 259 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 15/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ R++ + V + AEGS LVK GDT ++ ++ P G I Sbjct: 23 RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPA-PDTPDRGVIIV 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQ--II 113 ++P ++ G S E+ R++ R +R VDLS L G + + Sbjct: 82 NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVF 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 +D + DG A+ A AL + E ++ +++ ++ Sbjct: 137 VDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIVGNKY 196 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +VD E S D ++V +Q S + F +L+++ + L + Sbjct: 197 LVDPSREEMSVGDTTLTITTDKDDNVVAMQKSG-GYLLDEKLFDELLDVSINCARKLREK 255 Query: 234 QKD 236 K+ Sbjct: 256 FKE 258 >gi|170290982|ref|YP_001737798.1| exosome complex RNA-binding protein Rrp42 [Candidatus Korarchaeum cryptofilum OPF8] gi|170175062|gb|ACB08115.1| 3' exoribonuclease [Candidatus Korarchaeum cryptofilum OPF8] Length = 268 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 95/252 (37%), Gaps = 23/252 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ R I + AEG +K G+T +L + P + G + Sbjct: 25 RVDGRGLHEYRPIEVLNGTFTKAEGEAWLKLGETQVLVGVKADLGEP-FPDTPDKGVFVS 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113 +LP ++ G + E+ R++ RA+RS +DL +L I Sbjct: 84 NAELLPVASPT-----FEPGPPDEGAIELARVVDRAIRSADAIDLGSLVILPGKLVYMIF 138 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-------VLKGHVAAISC 166 +D V+ DG + + +AL + ++ LK S Sbjct: 139 LDMYVLDYDGNLEDSLTLASLIALGRSEIPEVELKENGEIEVKESKRKLELKDIPINFSF 198 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ++D E+S D + G + VQ TF+ + ++N+A+ + Sbjct: 199 VKIGSKILLDPTLEEESVSDASITVAINKDGKVCSVQK--RHGTFTVEEILNIVNVARSK 256 Query: 227 IADLIKLQKDVI 238 +L ++ ++ I Sbjct: 257 WPELARIVREAI 268 >gi|124027457|ref|YP_001012777.1| exosome complex RNA-binding protein Rrp42 [Hyperthermus butylicus DSM 5456] gi|123978151|gb|ABM80432.1| RNase PH-related exoribonuclease [Hyperthermus butylicus DSM 5456] Length = 328 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 90/252 (35%), Gaps = 23/252 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ ++ R + +T AEGS LVK G T +L + V + + Sbjct: 27 VRLDGRKLDETRPVEITPGYIDRAEGSALVKLGQTVVLAGVK-TDIVAPFPDTPNEAVLV 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQII-- 113 +P ++ G + E+ R+I R+LR V L L + + Sbjct: 86 VHAEFVPLASPT-----FEPGPPDENAIELARVIDRSLREIKAVALDKLVLEPGKHVWRL 140 Query: 114 -IDCDVIQADGGTRT--------AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164 +D ++ DG A +T A +KF + V + Sbjct: 141 YVDLYILNHDGNLFDASMLAAMAALMTTRLPAAVKTEDGYTVDRSKFTGLVPVNHKVVTV 200 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + L IVD Y E+ D ++D G I +Q + + + +A Sbjct: 201 TIAKLSNRLIVDPTYEEEQVADTRLVVAVSDDGRIAGIQKTGMGD-LTYKEVLTAVAIAL 259 Query: 225 DRIADLIKLQKD 236 ++ +K ++ Sbjct: 260 NKAQVYLKALEE 271 >gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054] gi|149388461|gb|EAZ63552.2| predicted protein [Pichia stipitis CBS 6054] Length = 241 Score = 141 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 22/236 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58 +R+ GR+ N++R + +GS ++ G+T ++ E N+ Sbjct: 9 LRIDGRRWNEIRNFECRINTHPNSSDGSSYIEQGNTKVICVVQGPMEPALRSQANSNEAT 68 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + + ST R KR + R +++ + R + V + I ID V Sbjct: 69 LEVNLSVANFSTTERKKR----SKSEKRMVQLKTTLERTFQQSVMCNLYPRTLIRIDLHV 124 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + DGG A +AL D M D +VAA++ G+ P++D++ Sbjct: 125 LSQDGGMLAACTNAMTLALIDAGVSMYD-------------YVAAMTAGLHDQTPLLDMN 171 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 E++ + V+ S + + D ++L +A + L Sbjct: 172 GLEENDMSTLTIGVIGKSEKLSLLML---EDKIPLDRLESVLAIAIAGSHKIRDLM 224 >gi|327291858|ref|XP_003230637.1| PREDICTED: exosome complex exonuclease RRP41-like, partial [Anolis carolinensis] Length = 188 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 21/195 (10%) Query: 49 MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108 + ++ + STG R +R ++ E+ + + + + Sbjct: 5 RSKALHDQAVVNCQFSLATFSTGERKRRPHG----DRQTSEMSLHLKQTFEAAILTQLYP 60 Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 QI I ++QADGG A++ A +A+ D L+ +V A S G Sbjct: 61 RSQIDIYVQILQADGGNYCASVNAATLAVIDAGI-------------PLRDYVCASSAGF 107 Query: 169 LCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + P+ DL+Y E+++ + S I ++ +A +DH ++ A Sbjct: 108 IEDTPLADLNYVEEASGGPQLALALLPKSEQIALLEMNAR---LHEDHLERIMEAASKAC 164 Query: 228 ADLIKLQKDVISNEV 242 D+ + V+ + Sbjct: 165 KDVYLVLDQVVREHL 179 >gi|221113409|ref|XP_002164788.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 258 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 79/240 (32%), Gaps = 19/240 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR EN++R + L A GS V+ DT L+ P + + G I Sbjct: 35 RQDGRGENEIRPMYLKAGTIHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFC 94 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E P S RV Q S+E I +A S V L + QI I ++++ Sbjct: 95 EVTFAPFSWHERVSN------QDSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILEY 148 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G + A A +AL D M D + +A S VD E Sbjct: 149 SGNCLSYAFIAASIALADAGIEMLDLVTSCE---------SAFSNETSIQRVCVDPSGEE 199 Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 S M I + E + D + + + K K+ I N Sbjct: 200 VSLCKGRVVIAYMPSLNKISYLSMQGEE---TIDDSMQNVITCIEGCLRIYKYMKECIMN 256 >gi|219127863|ref|XP_002184146.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404377|gb|EEC44324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 274 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 88/257 (34%), Gaps = 33/257 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHG 57 +R GR+ +++R + + + GS LV+ G T +L T + + N Sbjct: 16 LRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRADENPDQA 75 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + P S+ R + + R E M+ RA+ + + L +I + Sbjct: 76 VLDVTVQSAPFSSS--ADRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVS 133 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173 V+ DGG AAI A +AL D M K V A S G+ Sbjct: 134 VLADDGGRLCAAINAATLALMDAGIPM-------------KDFVCACSAGLPGTSATPDS 180 Query: 174 ----IVDLDYGED-----STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 +VDL+ E+ ++ +V Q A D +L+ A Sbjct: 181 HALTLVDLNRQEESSTGGQAATHMPVALLPQRNTLVLAQCEARLPNL--DTLERVLDAAT 238 Query: 225 DRIADLIKLQKDVISNE 241 + + + + + Sbjct: 239 EGCRAVFDILQAAVREH 255 >gi|159040755|ref|YP_001540007.1| exosome complex RNA-binding protein Rrp42 [Caldivirga maquilingensis IC-167] gi|157919590|gb|ABW01017.1| 3' exoribonuclease [Caldivirga maquilingensis IC-167] Length = 279 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 87/237 (36%), Gaps = 26/237 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R RQ MR++++ V K A+GS LV G+T ++ E P + G + Sbjct: 26 RPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGIKFELGKP-FEDTPNEGNLIV 84 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR-----SVVDLSALGSRQI---I 113 P + G + EI R+I RALR + DL + + + Sbjct: 85 NLETPPLAAPT-----FEPGPPDENAIEIARIIDRALRHSNYIPLRDLVIIPGKSVYSMW 139 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAI 164 +D V+ DG +++ A A+ + D S K L+ + + Sbjct: 140 VDIYVLNHDGNLIDSSMLAAVSAIANAQVPRAIIDGENVKLDKSTKIPLNINPQNMPLTV 199 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 + + Y IVD E+ D +IV +Q F+ + +M+N Sbjct: 200 TYYKIDKYLIVDPTLEEEVMSDGRFTVASDGE-NIVALQKG--EGYFTPEEVDSMMN 253 >gi|126459545|ref|YP_001055823.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum calidifontis JCM 11548] gi|126249266|gb|ABO08357.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum calidifontis JCM 11548] Length = 274 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 101/254 (39%), Gaps = 26/254 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +Q+R + + V K A+GS VK G TH++ + P + G + Sbjct: 29 RIDGREVDQVRPVEVKTGVVKTADGSAEVKLGKTHVVAGVKIGLGQP-FPDAPDEGVLVV 87 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL-----GSRQIII 114 +LP ++ G + E+ R++ R LR VD L + + + Sbjct: 88 NAEVLPHASPY-----TEVGPPDEFAIELARVVDRGLRHCGYVDFKKLSVEGGKAYVLWV 142 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164 D VI DG AA A AL + D +++ + L+ A+ Sbjct: 143 DLYVINDDGNLVDAANLAAVAALKNAALPAVVKDETGAVKLDRNSRTPMPLDLEKAPIAV 202 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 S G + +D + E+ ++D + IV +Q + +F+Q A L+LA Sbjct: 203 SVGKIANVLFLDPIFEEELSLDGRITYTFAQE-RIVAIQKTL--GSFTQQELEAALDLAW 259 Query: 225 DRIADLIKLQKDVI 238 + K+V+ Sbjct: 260 RGRESYLASLKEVL 273 >gi|125546411|gb|EAY92550.1| hypothetical protein OsI_14290 [Oryza sativa Indica Group] Length = 260 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 25/240 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R + + A GS +FG T ++ + + + + G + Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +T R QG ++E M+ +AL V L + + V+++ Sbjct: 99 NVSYTTFATPMRG--------QGTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLES 150 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G I+ A +AL D M D V ++S I+D E Sbjct: 151 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCFGKNIIIDPTSDE 197 Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ D M I ++ + E +S + L D + L + ++ + + Sbjct: 198 EAWQDGSLMVAYMPARKEITQLTLTGE---WSDGKITNAVELCMDACSKLCDILREHLKD 254 >gi|41469640|gb|AAS07363.1| putative exoribonuclease [Oryza sativa Japonica Group] gi|108712055|gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed [Oryza sativa Japonica Group] gi|125588609|gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group] gi|215768717|dbj|BAH00946.1| unnamed protein product [Oryza sativa Japonica Group] Length = 260 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 25/240 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R + + A GS +FG T ++ + + + + G + Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +T R QG ++E M+ +AL V L + + V+++ Sbjct: 99 NVSYTTFATPIRG--------QGTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLES 150 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G I+ A +AL D M D V ++S I+D E Sbjct: 151 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCFGKNIIIDPTSDE 197 Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ D M I ++ + E +S + L D + L + ++ + + Sbjct: 198 EAWQDGSLMVAYMPARKEITQLTLTGE---WSDGKITNAVELCMDACSKLCDILRERLKD 254 >gi|296243059|ref|YP_003650546.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM 11486] gi|296095643|gb|ADG91594.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM 11486] Length = 289 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 94/257 (36%), Gaps = 24/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR R I++ + A+GS V G T ++T +E P + G + Sbjct: 28 RIDGRGLLDYRPINVYLNPIEKADGSSHVILGTTQVITGVKIELGEP-FADRPDEGVLQV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQIII-- 114 +P ++ G S E+ R++ R+LR +D L +++ + Sbjct: 87 HAEFVPLASQT-----FEPGPPDENSIEVARVVDRSLREPKAIDFKQLVVAPGKKVWVVF 141 Query: 115 -DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ---------LSQVLKGHVAAI 164 D +I G A++ + +AL + + VA + Sbjct: 142 NDIYLIDHGGNIMDASMLSSMLALATAKIPYYEEKEPGVYVVDNKRHTSPLPVNTLVATV 201 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + G+ IVD E+ ++ + + G + +Q S+ + +A Sbjct: 202 TMGIHEDVIIVDPSIEEEVVLNTFLTIAVDEKGRVCGIQKKGIAG-LSKKMLDQAVEIAL 260 Query: 225 DRIADLIKLQKDVISNE 241 ++ LI L + +++N Sbjct: 261 NKGGFLIDLIRKILNNP 277 >gi|6433781|emb|CAB60663.1| RnpH protein [Bradyrhizobium japonicum] Length = 86 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 51/86 (59%), Positives = 67/86 (77%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR S R +++R ++L R V KYAEGSCLVKFGDTH+L TATLE+++P W++ GW+T Sbjct: 1 MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGR 86 AEYGMLPR+T R +REA +G+Q GR Sbjct: 61 AEYGMLPRATSERTRREASAGKQSGR 86 >gi|84490040|ref|YP_448272.1| exosome complex RNA-binding protein Rrp42 [Methanosphaera stadtmanae DSM 3091] gi|84373359|gb|ABC57629.1| putative exosome complex, exonuclease 2 subunit [Methanosphaera stadtmanae DSM 3091] Length = 265 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 22/247 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R+ ++ R IS+ A+GS +V G T ++ + P + G I Sbjct: 22 RIDDRKFSEYRNISIKTNYIGKADGSAMVSIGCTTVIVGVKAQMTTP-FNNAPNSGIIIT 80 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALG------SRQII 113 +L ++ R G + EI R++ RA+R VVDL L S ++ Sbjct: 81 NTELLAIAS-----RNFEYGPPNKFAVEISRVVDRAIRESPVVDLDKLCVIEGSKSWKLH 135 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------SQVLKGHVAAISC 166 ID ++ DG AA GA AL N + +K + Sbjct: 136 IDMYIVDFDGNIMDAACLGAICALLTTKIPTATSVNGEIVIDEENLTPLPIKNRSILCTV 195 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + IVD E+ +D +F + G + +Q T + + +A R Sbjct: 196 VKINNQLIVDPSKIEEILMDSSVSFGFREDGSLCALQKCGLN-TLTHKEVTKAMKIASIR 254 Query: 227 IADLIKL 233 +L + Sbjct: 255 AKELFSI 261 >gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895] gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895] Length = 246 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 21/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58 +RL GR+ N++R + A +GS ++ G+ L+T T + + + N Sbjct: 12 LRLDGRRWNELRRFECSINTHPTAADGSSYLEQGNNKLITLVTGPHEPALRSQVNPSKAT 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +T M + R K + R E+Q + R V L I + V Sbjct: 72 LTVTVNMTKFAAAERSK---TGHKNERRILEMQTALVRTFEKNVMLQLYPRTAIDVQVHV 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DGG + I G +AL D M + +++ IS G+ P++DL+ Sbjct: 129 LQNDGGVLGSMINGITLALIDAGIAMYE-------------YISGISVGLYDTTPLLDLN 175 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E+ + V+ S + + D ++++L + + V+ Sbjct: 176 RLEEQAMSCFTLGVVGKSEKLSLL---LVEDKVPLDRLESVMSLGIAGTHRVRDMMDKVL 232 Query: 239 SNE 241 Sbjct: 233 RQH 235 >gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404] gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404] Length = 240 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58 +R+ GR+ N++R + +GS V+ G+T ++ T E ++++H Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVVCTVQGPIEPQLRSQQHSEHAN 68 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I + +T R KR + R E++ ++ + + ++ III+ V Sbjct: 69 IEINLTIANFATFERKKR----NKNEKRLIELKNILEKTFMESIMINLYPRTNIIINIQV 124 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + DGG +A +AL D M D +V++I+CG+ P++DL+ Sbjct: 125 LSQDGGLLSAITNSITLALIDSGISMYD-------------YVSSINCGLYDTTPLLDLN 171 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ I V+ S + + D +L+LA + L + Sbjct: 172 NLEENDISNLTIGVIGKSEKLALL---LSEDKMPLDRLENVLSLAIAGSHRIRDLMDQEV 228 Query: 239 SNE 241 Sbjct: 229 RKH 231 >gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa] gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa] Length = 263 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 82/240 (34%), Gaps = 25/240 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q R A GS +FG+T ++ + + + + G + Sbjct: 41 RSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDKGKLNC 100 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +T QG ++E M+ +AL V L + + V+++ Sbjct: 101 NVSYTTFATTVHG--------QGSDNKEFSTMLHKALEGAVMLETFPKTTVDVFALVLES 152 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G I+ A +AL D M D VA +S L I+D E Sbjct: 153 GGSDLPVVISCASLALADAGIMMYDL-------------VAGVSVSCLGRNLIIDPTLEE 199 Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +S D M I ++ + E +S + + L D + L K+ + + Sbjct: 200 ESFQDGSLMITCMPSHYEITQLTITGE---WSTANLNEAMQLCLDACSKLAKILRSCLKE 256 >gi|327310388|ref|YP_004337285.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis 768-20] gi|326946867|gb|AEA11973.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis 768-20] Length = 273 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 95/239 (39%), Gaps = 25/239 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +Q+RE+S+T V A+GS G T ++ + P + G + Sbjct: 28 VRIDGRTPDQLREVSITTNVVNTADGSAEALLGKTRVVAGVKVGLGQP-FPDAPDEGVLI 86 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ-----II 113 +LP ++ + G + E+ R++ R +R VD L Q + Sbjct: 87 VNAEILPHASPY-----SEIGPPDETAIELARVVDRGIRHSGFVDFKKLAIDQNKVYVLW 141 Query: 114 IDCDVIQADGGTRTAAI---------TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164 +D V+ DG AA T A+ D D +NK L L A+ Sbjct: 142 VDLYVLNDDGNLVDAANLAALAALRSTMLPSAVKDETGVKLDRNNKTALPSDLSKAPIAV 201 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S G + IVD ++ E+ ++D + IV +Q + F++ ++LA Sbjct: 202 SIGKIDNRLIVDPNFEEELSLDGRITVTIAQD-SIVSIQKTM--GYFTEQELGQAVDLA 257 >gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp. lyrata] gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp. lyrata] Length = 256 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 25/240 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q R L A GS +FG+T ++ + + + + G + Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVFSDVGRLNC 93 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 ++ QG +E M+ +AL V+ + + + V+++ Sbjct: 94 NVSYTTFASPTLG--------QGTDHKEYSSMLHKALEGVIIMETFPKTTVDVFALVLES 145 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G + I+ A +AL D M D + A+S + ++D E Sbjct: 146 GGSDLSVVISCASLALADAGIMMYDL-------------ITAVSVSCIGKSLMIDPVTEE 192 Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D M I ++ + E ++ + + L D + L ++ +D++ Sbjct: 193 EGCEDGSFMMTCMPSRYEITQLTVTGE---WTTPNINEAMQLCLDACSKLGEIMRDLLKQ 249 >gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium dendrobatidis JAM81] Length = 253 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 25/244 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R+ +Q+R I A GS ++ G+ ++ + ++ G + Sbjct: 31 RADKRRPDQIRPIYTKAGTIPQANGSAYIETGNLKVICAVYGPRQSSSRQLSSSTGTLQC 90 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 ++ P S R + +E ++ +AL + L I + V++ Sbjct: 91 DFKFAPFSGEKRKGYAK-----DDQEKEFSMVLEQALTPSIRLENYPKFTIQVFVIVLEN 145 Query: 122 DG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178 DG AAI+ A +AL + M D VAA S +D+ Sbjct: 146 DGSMSALAAAISCASLALANAGIEMLD-------------MVAASSIAYFGESMLCLDVS 192 Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 E+ D M + + + T + L D + + + ++ Sbjct: 193 LKEEMVQDGAMLVSYMPSLNEVTHLIQTGLATT---SQCTKAIELGVDACSQIHTILQEA 249 Query: 238 ISNE 241 + +E Sbjct: 250 LLSE 253 >gi|291237650|ref|XP_002738745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii] Length = 273 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 83/245 (33%), Gaps = 22/245 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ N +R I L + A+GS ++ DT + +V G +T Sbjct: 37 RHDGRKPNDIRPIFLRCGIISNAKGSAYIETKDTKVTCAVYGPRQVVRREDFKLTGTLTC 96 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 ++ S R + Q +++ ++ +A+ V L QI I V+Q Sbjct: 97 DFKFATFSCQKRQQHM-----QSSNEKDLSLIVLQAMEPAVCLEKYPRAQIDIFITVLQN 151 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G +AAIT A AL M D V S + +VD Y E Sbjct: 152 GGSALSAAITCASAALAAAGIEMYDV-------------VVGCSTRQIGNTCLVDPAYDE 198 Query: 182 DSTIDV----DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + + + + +V E + ++ D + + + Sbjct: 199 EYNSKTGGKNNGSLCLGLMPSLNQVSAFIECGELETEILMQSIHSCVDGCMRIYPVVRQC 258 Query: 238 ISNEV 242 ++ + Sbjct: 259 LTKSI 263 >gi|320581308|gb|EFW95529.1| exosome component Ski6p, putative [Pichia angusta DL-1] Length = 246 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 31/244 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKV-----PMWIRNT 54 +R+ GR+ N++R A +GS V+ G++ +L + + Sbjct: 12 LRVDGRRWNELRRFECQINTHPNAADGSSYVQQGNSKVLCLVKGPMEHGANLAAGTKLDP 71 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 ++ P ++ R KR + R QEI ++ R + L I I Sbjct: 72 NGPVLSLNINYPPFASNERKKRP----KNDRRLQEISIILKRCFMKTIVLKNYSRTAIDI 127 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 + V+ DGG +AL D + D +V+A+S G+ P+ Sbjct: 128 NLTVLAMDGGLLACFCNAITLALIDAGISLYD-------------YVSAVSVGLYDQTPL 174 Query: 175 VDLDYGEDSTIDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRI---ADL 230 +D++ E++ D +F+ G ++ + D +++L + +L Sbjct: 175 LDMNALEEN----DLSFITIGVVGDSDKLNLTLCEDKLPLDKLERLISLGIEGCHRLKEL 230 Query: 231 IKLQ 234 + LQ Sbjct: 231 MDLQ 234 >gi|188996726|ref|YP_001930977.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp. YO3AOP1] gi|254782742|sp|B2V900|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp. YO3AOP1] Length = 703 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 89/250 (35%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55 +R+ GR+ ++R I + V GS + G T T TL I Sbjct: 311 IRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGET 370 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG VS R+ G + RAL ++ I + Sbjct: 371 LKRFMLHYNFPPFSTGEAKPPRPVSRREIGHG----NLAERALEPLIPSEEEFPYVIRVV 426 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 D+++++G T A + G +AL D M K HVA I+ G++ Sbjct: 427 SDILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLIKSEDKF 473 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + +Q + +++ L A++ ++ Sbjct: 474 VVLSDILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKVKGLTREILQKALEQAREGRNYIL 532 Query: 232 KLQKDVISNE 241 L I Sbjct: 533 DLMYQAIPEP 542 Score = 98.2 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 31/231 (13%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67 S+ K A G+ +V+ GDT +L A + E+ + ++ YG +P Sbjct: 14 PYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G VKRE G+ R + R I R +R + +II + AD Sbjct: 74 ---GGFVKRE---GKPSEREILVARNIDRPIRPLFPKGFYND--VIITAYTLSADDQYDP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 I GA ALH +G +A + + G IV+ Y + + Sbjct: 126 DVLGIVGASAALH-------------ISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKS 172 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D++ V IV V+G A+ ++ + I LI+LQ++ Sbjct: 173 DLEI-VVAGSKDAIVMVEGGAKEVP--EEVILEAMLFGHQEIKKLIELQEE 220 >gi|301099917|ref|XP_002899049.1| exosome complex exonuclease MTR3-like protein [Phytophthora infestans T30-4] gi|262104361|gb|EEY62413.1| exosome complex exonuclease MTR3-like protein [Phytophthora infestans T30-4] Length = 252 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 78/226 (34%), Gaps = 22/226 (9%) Query: 9 NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWITAEYGMLP 67 ++MR + A GS V+ G T +L R +K G + + P Sbjct: 35 DEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAP 94 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 + +RE Q E+ ++ AL V L L I + +++ DGG Sbjct: 95 FA-DKLTRRE---RGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLA 150 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ A +AL D M D V A S G++ G ++D E+ D Sbjct: 151 AALNCASLALADAAVEMYDV-------------VTASSAGIVNGSVVLDPSREEEQRGDG 197 Query: 188 DANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 M G + + + ++L D +I+ Sbjct: 198 KLALAYMPSMGRVTYM---LQAGKIHHTQLQEAVDLCTDACTGVIR 240 >gi|257076445|ref|ZP_05570806.1| exosome complex RNA-binding protein Rrp42 [Ferroplasma acidarmanus fer1] Length = 260 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 88/228 (38%), Gaps = 16/228 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR REI +T A GS +V+ G T ++ +EE P + + G + Sbjct: 26 RLDGRGLQDYREIKITENFVPKAAGSAMVEIGKTKVVAGIKVEEGDP-FEDSPDSGVMAL 84 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113 +LP + SG ++ E R++ R +R +VD S L G R I Sbjct: 85 NIELLPMAFPT-----FESGPPSEQAIEYSRVVDRGIRESKMVDTSKLVIESGKRVWMIF 139 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 +D DV+ DG AA A AL + + K S + +I+ + Sbjct: 140 VDIDVLNYDGNIIDAATLAAVTALKNTVVPASKIGQK-DYSLPINATPVSITMVKIGDEI 198 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 + D D E+ + + + +I +Q + FS D + Sbjct: 199 VCDPDLEEEQVSNGRITVTIAEDHNIHAMQK-GDIGEFSLDEIRKAIK 245 >gi|167464772|ref|ZP_02329861.1| ribonuclease PH [Paenibacillus larvae subsp. larvae BRL-230010] Length = 80 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 40/80 (50%), Positives = 58/80 (72%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR GRQ N++R + +T +K+AEGS L++ GDT ++ TAT+EE+VP +++N GW+T Sbjct: 1 MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATIEERVPPFLKNEGKGWVT 60 Query: 61 AEYGMLPRSTGNRVKREAVS 80 AEY MLPR+T R +REA Sbjct: 61 AEYSMLPRATQVRNQREASK 80 >gi|149066120|gb|EDM15993.1| exosome component 4 (predicted), isoform CRA_b [Rattus norvegicus] Length = 211 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 69/195 (35%), Gaps = 21/195 (10%) Query: 49 MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108 + +Y STG R +R + S E+ + + + + Sbjct: 28 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHP 83 Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 QI I V+QADGGT A + A +A+ D M D V A S G Sbjct: 84 RSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGF 130 Query: 169 LCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + G + DL + E++ + SG I ++ + +DH +L A Sbjct: 131 VDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAA 187 Query: 228 ADLIKLQKDVISNEV 242 D+ L V+ V Sbjct: 188 RDVHTLLDRVVRQHV 202 >gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 250 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 84/236 (35%), Gaps = 14/236 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---HG 57 +RL GR+ N++R I A+GS ++ G+T +L + T + + Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + E S R KR + R+ E++ I A V+ L I ++ Sbjct: 73 KVEVEINFAGFSGVERRKR-----KSDKRTSEMEHCIRSAFEGVLLLHLYPHSTITLNIH 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ++ DG A I + +AL D M D + A + P++DL Sbjct: 128 IVSQDGSLLAACINASTLALIDAGIPMTDYLVACTAASSASASAADNASAD---DPLLDL 184 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + E+ + + +S + + + +ML + + + + Sbjct: 185 NNQEELELPFLTVGTLGESDKVAVCLM---ESRVRMERLESMLAVGIEGCKRMRNI 237 >gi|156537299|ref|XP_001606070.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit Rrp41-like protein [Nasonia vitripennis] Length = 284 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 5/143 (3%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R+ ++R++ + V A+GS ++ G T ++ +A ++P + G I Sbjct: 39 RVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICSAFDPREIPNKTSYSTQGEIFC 98 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ +T R + Q +E ++ RAL V + Q+ + V+ Sbjct: 99 EFKFASFATCKRKGHQ-----QDTEEKEYSLIMQRALEPAVCRHEFPNFQVDVYALVLDN 153 Query: 122 DGGTRTAAITGAWVALHDCLQHM 144 G AAI GA +AL + M Sbjct: 154 GGSALGAAIMGASLALANASVPM 176 >gi|260941676|ref|XP_002615004.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720] gi|238851427|gb|EEQ40891.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720] Length = 244 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 84/238 (35%), Gaps = 22/238 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGW 58 +R+ GR+ N++R A+GS ++ G+T ++ ++ N Sbjct: 12 LRVDGRRWNELRRFECKINTHANSADGSSYIEQGNTKVMCMVHGPKEPSLRSQSNQNRAT 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I + ST R KR R R E++ + R + I + V Sbjct: 72 IEINLNVASFSTLERKKR----NRTEKRMVELKTTLERTFEQSILAHLYPRTLIEVHVQV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + DGG + +AL D M D +V+A++ + P++DL+ Sbjct: 128 LAQDGGMLASITNAITLALVDAGIAMYD-------------YVSAVNVALHDQTPLLDLN 174 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E++ + V+ S + + D A+L +A + L + Sbjct: 175 TLEENDMSCLTIGVVGKSEKLAMLLL---EDKMPLDRLEAVLGIAIAGGHRIRDLMDE 229 >gi|115474519|ref|NP_001060856.1| Os08g0116800 [Oryza sativa Japonica Group] gi|50725627|dbj|BAD33094.1| putative ribonuclease PH [Oryza sativa Japonica Group] gi|113622825|dbj|BAF22770.1| Os08g0116800 [Oryza sativa Japonica Group] gi|125559948|gb|EAZ05396.1| hypothetical protein OsI_27604 [Oryza sativa Indica Group] gi|125601990|gb|EAZ41315.1| hypothetical protein OsJ_25825 [Oryza sativa Japonica Group] gi|215686578|dbj|BAG88831.1| unnamed protein product [Oryza sativa Japonica Group] Length = 262 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 79/240 (32%), Gaps = 25/240 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R + + A GS +FG T ++ + + + + G + Sbjct: 41 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 100 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +T R + E M+ +AL V L + + V+++ Sbjct: 101 NVSYTTFATPIRGQGMDNK--------EYSAMLHKALEGAVMLHTFPKTTVDVFALVLES 152 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G I+ A +AL D + D V ++S I+D E Sbjct: 153 GGSDLPIIISCASLALADAGIMIYDL-------------VTSVSVSCFGKNIIIDPTSDE 199 Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ D M I ++ + E +S + L D + L + ++ + + Sbjct: 200 EAWQDGSIMVAYMPARKEITQLTLTGE---WSDGKITNAVELCMDACSKLCDILRERLKD 256 >gi|242046408|ref|XP_002461075.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor] gi|241924452|gb|EER97596.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor] Length = 261 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 82/240 (34%), Gaps = 25/240 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R + + A GS +FG T ++ + + + + G + Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDIGRLNC 98 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +T R QG ++E M+ +AL V L + + V+++ Sbjct: 99 NVSYTTFATPVRG--------QGADNKEYSSMLYKALEGAVMLHTFPKTTVDVFALVLES 150 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G I+ A +AL D M D V ++S I+D E Sbjct: 151 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCFGKNIIIDPTSDE 197 Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ D M I ++ + E +S + L D + L + +D + + Sbjct: 198 EAWQDGSLVVAFMPARKEITQLTLTGE---WSDGRITNAVELCMDACSKLGDILRDHLKD 254 >gi|42567185|ref|NP_194479.2| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] gi|124300968|gb|ABN04736.1| At4g27490 [Arabidopsis thaliana] gi|124301080|gb|ABN04792.1| At4g27490 [Arabidopsis thaliana] gi|332659949|gb|AEE85349.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] Length = 256 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 25/240 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q R L A GS +FG+T ++ + + + + G + Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNC 93 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 ++ QG +E M+ +AL V+ + + + V+++ Sbjct: 94 NVSYTNFASPTLG--------QGTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLES 145 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G + I+ A +AL D M D + A+S + ++D E Sbjct: 146 GGSDLSVLISCASLALADAGIMMYDL-------------ITAVSVSCIGKSLMIDPVTEE 192 Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D M I ++ + E ++ + + L D + L ++ +D + Sbjct: 193 EGCEDGSFMMTCMPSRYEITQLTITGE---WTTPNINEAMQLCLDASSKLGEIMRDCLKQ 249 >gi|73974732|ref|XP_857418.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 3 [Canis familiaris] Length = 226 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 68/195 (34%), Gaps = 21/195 (10%) Query: 49 MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108 + +Y STG R +R + S E+ + + + + Sbjct: 43 RARALPDRALVNCQYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHP 98 Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 QI I V+QADGGT A + A +A+ D M D V A S G Sbjct: 99 RSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGF 145 Query: 169 LCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + + DL + E++ + SG I ++ A +DH +L A Sbjct: 146 VDNTALADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAA 202 Query: 228 ADLIKLQKDVISNEV 242 D+ + V+ V Sbjct: 203 RDVHTVLDRVVRQHV 217 >gi|326514708|dbj|BAJ99715.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 262 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 85/241 (35%), Gaps = 25/241 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R + + A GS +FG T ++ + + + + G + Sbjct: 40 RADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 99 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +TG R QG ++E M+ +AL V L + + V+++ Sbjct: 100 SVSYTTFATGIRG--------QGLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLES 151 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G I+ A +AL D M D V ++S L I+D E Sbjct: 152 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCLGKNVIIDPTSDE 198 Query: 182 DSTID-VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ D M I ++ + E ++ + L D + L ++ ++ + + Sbjct: 199 EAWQDGGLMVSYMPARKEITQLTLTGE---WTDGKITNAVELCMDACSKLCEILRERLKD 255 Query: 241 E 241 Sbjct: 256 P 256 >gi|148697599|gb|EDL29546.1| exosome component 4, isoform CRA_c [Mus musculus] Length = 211 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 68/195 (34%), Gaps = 21/195 (10%) Query: 49 MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108 + +Y STG R +R + S E+ + + + + Sbjct: 28 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHP 83 Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 QI I V+QADGGT A + A +A+ D M D V A S G Sbjct: 84 RSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGF 130 Query: 169 LCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + G + DL + E++ + SG I ++ + +DH +L A Sbjct: 131 VDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAA 187 Query: 228 ADLIKLQKDVISNEV 242 + L V+ V Sbjct: 188 RGVHTLLDLVVRQHV 202 >gi|167045226|gb|ABZ09886.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG8O8] Length = 273 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 22/250 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ R +S+ V +A GS V+ GDT ++ ++ P + + G Sbjct: 24 RIDGRALDEHRPLSIDVGVIPHANGSARVRLGDTEVVAGVKIQPDRP-FPDMGEKGIFIC 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115 +LP + + +G EI R++ R +R ++DLS + I + Sbjct: 83 TAEILPLAHPS-----VETGPPQPYVIEIARVVDRGIRESGMIDLSQMVLVKDKSVIGLF 137 Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQ----VLKGHVAAISC 166 D V DG A + A+ M+D + + +++ Sbjct: 138 ADNVVTDHDGNLFDACSYASTAAVLTSKMPKWEMKDDKPVLVDGEESDTPITTIPVSVTM 197 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G++ Y IVD + E +D G+IV +Q FS D L+ Sbjct: 198 GLIGEYIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSSG-FSLDQLIKCSELSIST 256 Query: 227 IADLIKLQKD 236 ++ ++ K Sbjct: 257 GPEIREIIKQ 266 >gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1] gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1] Length = 250 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 83/233 (35%), Gaps = 14/233 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---HG 57 +RL GR+ N++R I A+GS ++ G+T +L + T + + Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + E S R KR + R+ E++ I A V+ L I ++ Sbjct: 73 KVEVEINFAGFSGVERRKR-----KSDKRTSEMEHCIRSAFEGVLLLHLYPHSIITLNIH 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ++ DG A I + +AL D M D + A + P++DL Sbjct: 128 IVSQDGSLLAACINASTLALIDAGIPMTDYLVACTAASSASASAADNASAD---DPLLDL 184 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + E+ + + DS + + + +ML + + + Sbjct: 185 NNQEELELPFLTVGTLGDSDKVAVCLM---ESRVRMERLESMLAVGIEGCKRM 234 >gi|320591734|gb|EFX04173.1| exosome complex exonuclease rrp41 [Grosmannia clavigera kw1407] Length = 511 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 87/255 (34%), Gaps = 27/255 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------------- 47 +R+ GR+ N++R R A+GS ++ G+T ++ T +V Sbjct: 236 LRVDGRRWNELRRCHAEVRTQAAADGSSYLEMGNTKVMCVLTGPSEVGQSRARMAGGGGG 295 Query: 48 --PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105 + K + + S+ NR +R RQ R+QE+ I R L +V+ Sbjct: 296 GGGGGGGDAKDAEVIVNIVVAGFSSVNRQRR----SRQDKRTQEMAATISRTLAAVLHTH 351 Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165 I I V+ DG A I A +A D M D A + Sbjct: 352 LYPRSTITISLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSSSSYAAADDA 411 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 P++DL+ E+ + + S + + + ML +A D Sbjct: 412 A-----DPLLDLNLQEEQELPGLTVATLGASDRVAALVCESRVQA---GRLEGMLAVAVD 463 Query: 226 RIADLIKLQKDVISN 240 + + V+ Sbjct: 464 GCKQVRAILDKVVRE 478 >gi|171185833|ref|YP_001794752.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus neutrophilus V24Sta] gi|170935045|gb|ACB40306.1| 3' exoribonuclease [Thermoproteus neutrophilus V24Sta] Length = 273 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 97/252 (38%), Gaps = 25/252 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++R + + V K A+GS VK G TH++ + P + G + Sbjct: 29 RVDGREPERVRSVEIRTGVVKTADGSAEVKLGRTHVVAGVKVGLGQP-FPDAPDEGVLVV 87 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL----GSRQI-II 114 +LP ++ G + E+ R++ R +R VD L G I + Sbjct: 88 SAEVLPHASPY-----TEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGKAYILWV 142 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAIS 165 D VI DG AA A AL + D +NK L L A+S Sbjct: 143 DLYVINDDGNLVDAANLAAVAALKNTQLPAVVKEEQGVKLDRNNKTPLPVDLNKAPIAVS 202 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 G + ++D E+ ++D F +++ IV Q + F+ A L+LA Sbjct: 203 IGKIGSVLLLDPTLEEELSLDGRITFTISED-RIVAAQKT--IGAFAPQELEAALDLAWK 259 Query: 226 RIADLIKLQKDV 237 + K+ Sbjct: 260 GRGQYAEFLKNA 271 >gi|118594124|ref|ZP_01551471.1| polynucleotide phosphorylase/polyadenylase [Methylophilales bacterium HTCC2181] gi|118439902|gb|EAV46529.1| polynucleotide phosphorylase/polyadenylase [Methylophilales bacterium HTCC2181] Length = 716 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 96/242 (39%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T + ATL +E++ ++ Sbjct: 324 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQAIVVATLGTGRDEQIIDALQGEFKD 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P +TG + R+ G ++ R L + + I + + Sbjct: 384 RFMLHYNFPPYATGETGRVGTPKRREIGHG----KLAKRGLSAALPSKEDFDYTIRLVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A+I G +A+ D M D + + + + A+ + D+ Sbjct: 440 ITESNGSSSMASICGGTMAMMDAGVPMTDHVAGIAMGLIKEDNRVAV---------LTDI 490 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + + + L+ A++ I ++K+ K Sbjct: 491 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKITGITSEIMQVALSQAREGIDHILKIMKKT 549 Query: 238 IS 239 + Sbjct: 550 LK 551 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A+G+ +V +GDT +L TA E + + T G +P Sbjct: 24 LTIETGEIGRQADGAVMVSYGDTVVLVTAVGNKNAREGQDFFPLTVDYQEKTYAAGKIP- 82 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R LR + + QI+ ++ + Sbjct: 83 --GGFFKRE---GRPSEKETLTCRLIDRPLRPLFPKNFYNEIQIVATVMSSDSEIDSDIP 137 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 AI GA AL G V A G + +++ + ++D Sbjct: 138 AIIGASAALAISGI-------------PFYGPVGASRVGYIDEKFVINPTKTQLVDSELD 184 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V ++ V+ +E + + + +IK+ + Sbjct: 185 L-VVAGSDAAVLMVE--SEAKELPEKVMLDAVLAGHKAMQPVIKMINE 229 >gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS] gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS] Length = 238 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 27/232 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR+ +MR+ + A+GS V+ G+T + + RN + + Sbjct: 10 RLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRR--RNREGAELMV 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 Y +T R +RE + E ++ + ++ L I + V+Q Sbjct: 68 SYSQATFAT--RKRREQM---HDRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQD 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG A I +AL D M D VAA G + G +VD++ E Sbjct: 123 DGSVTAAVINACTLALIDAGIPMIDI-------------VAAAEGGYIDGKMVVDMNKDE 169 Query: 182 DSTIDVDANF---VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 ++ V N +M SG + +Q +L++ ++ + Sbjct: 170 ENVGTV-FNVHTAIMQKSGAVALLQ---TEGKMPLQRLGDLLSIVEEGAKTI 217 >gi|225435349|ref|XP_002285257.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera] gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera] Length = 254 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 82/241 (34%), Gaps = 25/241 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +Q R L A GS +FG+T ++ + + + + G + Sbjct: 31 VRPDGRGFHQCRPAFLKTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMAYSGTGRLN 90 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 + R + G M+ +AL + + + + + V++ Sbjct: 91 CNVSYTTFAMPIRGQGSDHKG--------YSSMLHKALEGAIIVESFPKTTVDVFALVLE 142 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 + G I+ A +AL D M D VA++S L ++D Sbjct: 143 SGGSDLPVVISCASLALADAGIMMYDL-------------VASVSVSCLGKNLVIDPILE 189 Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+S D M + ++ + E +S + + + + L K+ + + Sbjct: 190 EESYQDGSLLITCMPSRNEVTQLTVNGE---WSTPRVHEAMQICLEACSKLAKIIRSCLK 246 Query: 240 N 240 Sbjct: 247 E 247 >gi|326521482|dbj|BAK00317.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 262 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 85/241 (35%), Gaps = 25/241 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R + + A GS +FG T ++ + + + + G + Sbjct: 40 RADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 99 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +TG R QG ++E M+ +AL V L + + V+++ Sbjct: 100 SVSYTTFATGIRG--------QGLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLES 151 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G I+ A +AL D M D V ++S L I+D E Sbjct: 152 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCLGKNVIIDPTSDE 198 Query: 182 DSTID-VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ D M I ++ + E ++ + L D + L ++ ++ + + Sbjct: 199 EAWQDGGLMVSYMPARKEITQLTLTGE---WTDGKITNAVELYMDACSKLCEILRERLKD 255 Query: 241 E 241 Sbjct: 256 P 256 >gi|237757160|ref|ZP_04585586.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium yellowstonense SS-5] gi|237690677|gb|EEP59859.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium yellowstonense SS-5] Length = 613 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 87/249 (34%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTKH 56 R+ GR+ ++R I + V GS + G T T TL I Sbjct: 312 RIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGETL 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG VS R+ G + RAL ++ I + Sbjct: 372 KRFMLHYNFPPFSTGEAKPPRPVSRREIGHG----NLAERALEPLIPSEEEFPYVIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D+++++G T A + G +AL D M K HVA I+ G++ Sbjct: 428 DILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLIKSEDKFV 474 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L A+ ++ Sbjct: 475 VLSDILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKVRGLTKEILQKALEQARVGRYYILD 533 Query: 233 LQKDVISNE 241 L I Sbjct: 534 LMYQAIPEP 542 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 31/231 (13%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67 S+ K A G+ +V+ GDT +L A + E+ + ++ YG +P Sbjct: 14 PYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G VKRE G+ R + R I R +R + +II + AD Sbjct: 74 ---GGFVKRE---GKPSEREILVARNIDRPIRPLFPKGFYND--VIITAYTLSADDQYDP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 I GA ALH +G +A + + G IV+ Y + + Sbjct: 126 DVLGIVGASAALH-------------ISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKS 172 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D++ V IV V+G A+ ++ + I LI+LQ++ Sbjct: 173 DLEI-VVAGSKDAIVMVEGGAKEVP--EEVILEAMLFGHQEIKKLIELQEE 220 >gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans] gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans] Length = 245 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 21/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58 +R+ GR+ N++R + + A +GS ++ G+ ++T T ++ + + N Sbjct: 12 LRVDGRRWNELRRLECSINTHANASDGSSYLEQGNNKVITLVTGPQEPKLRSQMNVTKAT 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I+ + S R K S + R E+Q + R V L QI I V Sbjct: 72 ISVALNITRFSKIERSK---SSHKNERRVLEMQTALVRTFEKNVMLHLYPRTQIEIQIHV 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DGG ++ I G +AL D M D +++ +S G+ P++DL+ Sbjct: 129 LQQDGGLMSSLINGITLALIDAGIAMYD-------------YISGVSIGLYDTTPLLDLN 175 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + V+ S + + D ++L + + +L + Sbjct: 176 SVEENAMSSVTLGVVGKSEKLSLL---LVEDKIPLDRMESVLAIGIAGSHRIRELMDKEL 232 Query: 239 SNE 241 Sbjct: 233 RKH 235 >gi|217967533|ref|YP_002353039.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum DSM 6724] gi|254782720|sp|B8E2S5|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum DSM 6724] Length = 693 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 25/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGW 58 R+ GR+ N++R +S V GS L + G+T +L+ T EE++ + ++ Sbjct: 315 RVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 Y P S G R+ G + RAL ++ I + +V Sbjct: 375 YIHHYNFPPFSVGEAKPLRGPKRREIGHG----ALAERALLPLIPKEEEFPYTIRVVSEV 430 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YPI 174 + ++G T A++ G+ ++L D +K HVA ++ G++ + Sbjct: 431 LSSNGSTSMASVCGSSLSLMDAGV-------------PIKTHVAGVAMGLIKEGEKFEVL 477 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED+ +D T +G I VQ + S + L AK+ ++ + Sbjct: 478 TDIQGLEDALGGMDFKIAGTKNG-ITAVQLDIKVDGLSYEIIEKTLKQAKEARYQILDIM 536 Query: 235 KDVISNE 241 + IS Sbjct: 537 EKTISQP 543 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 27/231 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPR 68 + + V+ A G+ LV++G+T +L T E+ V + ++ G +P Sbjct: 16 LKIDIGKVAWQATGAALVQYGETTVLVTVVASEEKKEDVDFFPLTVEYVERLYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+ R+I R LR + Q+I+ + T Sbjct: 75 --GGFFKRE---GKPTEPEILFARLIDRPLRPLFSKDFRNEVQVIVTVLSYDHENSTDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 +I GA A+ KG + A+ G ++ +++ +D Sbjct: 130 SIIGASCAIMLAGL-------------PFKGPIGAVRVGWDGKEWYINPSVALSNSLLLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T ++ ++G + ++ F + A ++I ++I Q++++S Sbjct: 177 LVVAGTKDA-VLMIEGDGKEVP--EEIFLEGIIRAHEQIGEVINFQEEILS 224 >gi|325969193|ref|YP_004245385.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28] gi|323708396|gb|ADY01883.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28] Length = 283 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 93/239 (38%), Gaps = 28/239 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R N RE+S+ V + A+GS LV G+T ++ +E P + G + Sbjct: 27 VRIDNRGLNDYRELSIRVGVVRTADGSSLVSLGNTKVMAGVKVEVGKP-FEDTPDEGALI 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112 + P ++ + G + EI R++ RA+R ++ +L + Sbjct: 86 VNLEIAPAASPD-----IEPGPPDENAIEIARVVDRAIRHSGFLNFKSLSIVTGRHAWFL 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQVLKGHVA------- 162 +D V+ DG A+ A AL + ++ N ++ + K +A Sbjct: 141 WVDIYVLNHDGNLVDASTIAAITALMNTALPKVELDPAGNILRIDRSNKSPLALNVDKLP 200 Query: 163 -AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 I+ L + +VD E+ D G++V +Q F++D M+ Sbjct: 201 LTITHAKLGNFLLVDPTREEEDLSDG-IYITGIAGGNVVAIQKV--TGAFTKDEVNYMI 256 >gi|307594959|ref|YP_003901276.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429] gi|307550160|gb|ADN50225.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429] Length = 283 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 91/239 (38%), Gaps = 28/239 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R N RE+S+ V K A+GS LV G+T ++ +E P + G + Sbjct: 27 VRIDNRGLNDYRELSIRVNVVKTADGSSLVSLGNTKVMAGVKVEVGKP-FEDTPDEGALI 85 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112 + P ++ + G + EI R++ RA+R +D +L + Sbjct: 86 VNLEIAPTASPD-----IEPGPPDENAIEIARVVDRAIRHSGFLDFKSLSIVTGKHAWFL 140 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQVLKGH--------V 161 +D V+ DG A+ A AL + ++ N ++ + + Sbjct: 141 WVDIYVLNHDGNLVDASTIAAVAALMNTALPKVELDPAGNILKIDRSARSPLRLNTDKLP 200 Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 I+ + + +VD E+ D G++V +Q F++D ++ Sbjct: 201 LTITYVKIGNFLLVDPTREEEDLSDG-VYITGIAGGNVVAIQKV--TGAFTKDEINNII 256 >gi|161527941|ref|YP_001581767.1| exosome complex RNA-binding protein Rrp42 [Nitrosopumilus maritimus SCM1] gi|160339242|gb|ABX12329.1| 3' exoribonuclease [Nitrosopumilus maritimus SCM1] Length = 272 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 92/251 (36%), Gaps = 22/251 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ RE+S+ A GS V+ GDT ++ ++ P + G Sbjct: 24 RVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGVKIQPDRP-FPDTGDKGLFIC 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115 +LP S +G G E+ R++ R +R ++D+S L I + Sbjct: 83 TAELLPLSHPT-----VETGPPGPEVIELARVVDRGIRESHMIDVSQLVIEKDKSVIGVF 137 Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQH-------MEDCSNKFQLSQVLKGHVAAISC 166 D V+ DG A A AL ++ + +++ Sbjct: 138 ADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAPALVEGEEVDVPITTIPVSVTM 197 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G + + IVD + E +++D G+I +Q + F+QD ++ Sbjct: 198 GKIGNHIIVDPNGDEWASMDARITITSDSDGNICALQKGGDDG-FTQDEIVQCGEISVRV 256 Query: 227 IADLIKLQKDV 237 A + + K Sbjct: 257 GAKIREKLKAA 267 >gi|297527571|ref|YP_003669595.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710] gi|297256487|gb|ADI32696.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710] Length = 285 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 24/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++ R I + AEGS VK G+T ++T LE P R G + Sbjct: 28 RIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGNTFVITGVKLEIGTPYSDR-PNEGVLQV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQIII-- 114 +P ++ G + E R+I R+LR + L L +++ + Sbjct: 87 HAEFVPLASPT-----FEPGPPDENAIETARVIDRSLREPKAIRLEDLVVIPGKKVWLIF 141 Query: 115 -DCDVIQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 D +I G + +AL+ + + L +V + Sbjct: 142 NDLYLIDHYGNIIDTGMLSTMLALNMTKIPRIVSIEDENVVIDKTVKEAPLPLNLNVVTV 201 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + G++ IVD + E+ +D F + ++ IV +Q + ++++A Sbjct: 202 TLGIIDDIIIVDPNIDEELVVDSRITFAIDETNRIVGIQKMGMKG-IKPKMIDQLVDIAL 260 Query: 225 DRIADLIKLQKDVISNE 241 + ++L L ++V++N Sbjct: 261 KKASELHGLLREVLNNP 277 >gi|190346269|gb|EDK38314.2| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC 6260] Length = 242 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 22/238 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58 +R+ GR+ N++R + GS V+ G+T ++ E + Sbjct: 12 LRVDGRRWNELRRFECKINTHPNSSTGSSYVEQGNTKVICMVEGPSEPETRSQVDVSRAT 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I + ST R KR + R E++ + R V I ++ V Sbjct: 72 IEVNIAVASFSTIERKKRL----KNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + DGG I +AL D M D +VAA++ G+ P++DL+ Sbjct: 128 LAQDGGMLATMINATTLALIDAGIAMYD-------------YVAAVAAGLHNETPLLDLN 174 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E++ + V+ S + + D +L + + +L Sbjct: 175 TLEENDMSHLTLGVIGKSEKLAVLML---EDKMPMDRLEPVLAIGIAGSHRIRELMDQ 229 >gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria maculans] Length = 280 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 86/242 (35%), Gaps = 14/242 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHG 57 +RL GR+ N++R I A+GS ++ G+T +L + T + G Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQG 72 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + E S +R KR + R+ E++ + A V+ L I ++ Sbjct: 73 KVEVEINFAGFSGVDRRKR-----KSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIH 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +I DG A I A +AL D M D + A + P++DL Sbjct: 128 IISQDGSLLAACINAATLALIDAGIPMSDYLVACTAASSASASAADNASAD---DPLLDL 184 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + E+ + + +S + + + ML + + + + V Sbjct: 185 NNQEELELPFLTVATLGESDKVSVCIM---ESRVRMERLEGMLAVGIEGCKRMRGILDGV 241 Query: 238 IS 239 + Sbjct: 242 LR 243 >gi|14601411|ref|NP_147948.1| exosome complex RNA-binding protein Rrp42 [Aeropyrum pernix K1] gi|29337018|sp|Q9YC05|ECX2_AERPE RecName: Full=Probable exosome complex exonuclease 2 gi|5105129|dbj|BAA80443.1| exosome complex exonuclease Rrp42 homologue [Aeropyrum pernix K1] Length = 276 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 24/255 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R R + + + + AEGS LVK G T ++ P + G +T Sbjct: 28 RPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAP-FKDTPNQGVLTV 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL----GSR--QII 113 +P ++ G + E+ R++ R+LR V VDL +L G + + Sbjct: 87 HAEFVPLASPV-----FEPGPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLW 141 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL---------SQVLKGHVAAI 164 +D +I DG A++ L + S ++ +K V + Sbjct: 142 VDLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETGEIIISKEGEGEELKVKTRVVTV 201 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + + Y +VD + E++ DV + ++G IV +Q + + ++ M+ + Sbjct: 202 TTAKIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTGM-GSLTEADIETMIGYSL 260 Query: 225 DRIADLIKLQKDVIS 239 + K ++ I Sbjct: 261 EASKVYFKALEEAIK 275 >gi|50307027|ref|XP_453491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642625|emb|CAH00587.1| KLLA0D09625p [Kluyveromyces lactis] Length = 245 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 21/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58 +R+ GR+ N++R + + A +GS ++ G+ ++T E NTK Sbjct: 12 LRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQAT 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 ++ + + R K S + R+ E Q + R + L I + Sbjct: 72 LSVTINLTKFAKMERSK---SSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHA 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DGG A + G +AL D M D V+ +S G+ P++DL+ Sbjct: 129 LQLDGGILGAMLNGITLALIDAGIAMYD-------------FVSGVSVGLYDTTPLLDLN 175 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + + S + + ++ + +++ + + L + Sbjct: 176 SLEENAMSSVTIGTIGKSEKLSLL-MVEDKVPLDR--LESVMAIGIAGTHRIRDLMDKEL 232 Query: 239 SNE 241 Sbjct: 233 RKH 235 >gi|146417428|ref|XP_001484683.1| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC 6260] Length = 242 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 22/238 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58 +R+ GR+ N++R + GS V+ G+T ++ E + Sbjct: 12 LRVDGRRWNELRRFECKINTHPNSLTGSSYVEQGNTKVICMVEGPLEPETRSQVDVSRAT 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I + ST R KR + R E++ + R V I ++ V Sbjct: 72 IEVNIAVASFSTIERKKRL----KNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + DGG I +AL D M D +VAA++ G+ P++DL+ Sbjct: 128 LAQDGGMLATMINATTLALIDAGIAMYD-------------YVAAVAAGLHNETPLLDLN 174 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E++ + V+ S + + D +L + + +L Sbjct: 175 TLEENDMSHLTLGVIGKSEKLAVLML---EDKMPMDRLEPVLAIGIAGSHRIRELMDQ 229 >gi|313673255|ref|YP_004051366.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio nitroreducens DSM 19672] gi|312940011|gb|ADR19203.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio nitroreducens DSM 19672] Length = 706 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR+ +++R I + + A GS L G+T L + TL K+ + + G Sbjct: 320 IRVDGRRYDEIRPIDIEVGLLPRAHGSALFTRGETQALVSTTLGTKMDSQLVDDIEGNSS 379 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + RAL V+ + I + Sbjct: 380 KRFMLHYNFPPFSVGEVGRMGAPGRREVGHG----ALAERALSFVIPDESDFPYTIRVVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A + G ++L D +K VA I+ G++ Sbjct: 436 EILESNGSSSMATVCGGCLSLMDAGV-------------PVKDMVAGIAMGLIYEKGRYA 482 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S D L A+ ++ Sbjct: 483 ILSDIMGIEDHLGDMDFKVAGTKDG-ITALQMDIKIEGLSMDLVREALAAARVGRLHILS 541 Query: 233 LQKDVISNE 241 ++V+++ Sbjct: 542 KMQEVLASP 550 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 82/244 (33%), Gaps = 37/244 (15%) Query: 7 QENQMR------EISLTRRV-SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTK 55 + ++R I L +K GS K G+T +L TA + E + + Sbjct: 6 KSYEIRLGSNAEPIILETGWKAKQTNGSIWAKHGETVVLVTAVMSKKVPEDIDFFPLTVN 65 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + G +P G +KRE+ + + I R+I R LR + QI+ Sbjct: 66 YIEKFYSVGKIP---GGFLKRES---KPSDKETLIARLIDRPLRPIFPDGFRNEVQIVAT 119 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +I A AL G V A+ G L G I+ Sbjct: 120 VVSSDQKNSPDVLSINAASAAL-------------MISDIPFNGPVGAVRVGKLNGEYII 166 Query: 176 DLDYG-EDSTIDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D D + N V+ IV V+ + S++ I ++I + Sbjct: 167 NPDAELFDQLV---MNIVLAGTEDAIVMVEAGLKN--VSEEEVVEAFEKGHQAIREIIAV 221 Query: 234 QKDV 237 QK + Sbjct: 222 QKKM 225 >gi|325185608|emb|CCA20090.1| exosome complex exonuclease MTR3like protein putativ [Albugo laibachii Nc14] Length = 251 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 29/249 (11%) Query: 1 MRLSGRQE--NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHG 57 +R + +Q+R + V A GS V+ T ++ P R + G Sbjct: 21 LRADQTRSSMDQIRATYMQVGVIHNASGSAYVELQGTKVICAVYGPRNNPRGRRKFHEGG 80 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + P + NR + Q ++ +++ +AL + L L + Sbjct: 81 QLICDVKFAPFAERNRTRNAG----QDPDEIDLSQIVTKALLPAIFLDKLPKCVVSCFVV 136 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ++Q+DG AI A +AL D M D V A + G++ +VDL Sbjct: 137 ILQSDGSELATAIMCASLALADAAIEMRDL-------------VTACNAGIVDDKLLVDL 183 Query: 178 DYGEDSTIDV-DANFVMT--DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-LIKL 233 E+ + V QG+ + M+++ + L + Sbjct: 184 CTSEERMSQGNTMLAFLPSLQKSTFVMQQGT-----MTHAQVEEMIDVCSIACSSVLNES 238 Query: 234 QKDVISNEV 242 K ++ +V Sbjct: 239 MKVALTQKV 247 >gi|15241441|ref|NP_196962.1| polyribonucleotide nucleotidyltransferase, putative [Arabidopsis thaliana] gi|4971998|emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] gi|4972000|emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] gi|7573307|emb|CAB87625.1| polynucleotide phosphorylase [Arabidopsis thaliana] gi|332004667|gb|AED92050.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] Length = 991 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 11/245 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 R+ GR +++R I GS L GDT +L T TL + Sbjct: 363 FRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPPK 422 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P T KR ++ R+ G + +AL +V+ I I+ Sbjct: 423 KRFMLHYSFPPYCTNEVGKRGGLNRREVGHGT----LAEKALLAVLPPEEAFPYTIRINS 478 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ +DG T A++ G +AL D + + L V S + + D Sbjct: 479 EVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVG--LITDVDPSSGEIKDYRIVTD 536 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + A D L A++ ++ + Sbjct: 537 ILGLEDHLGDMDFKIAGTRDG-VTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMER 595 Query: 237 VISNE 241 I++ Sbjct: 596 NINSP 600 Score = 60.9 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 77/222 (34%), Gaps = 36/222 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEYGMLPRS 69 R +S ++++A GS ++ +T +L+T T + P +T +Y + Sbjct: 62 RVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSPR-----DFLPLTVDYQEKQYA 116 Query: 70 TG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 G ++RE G R R+I R +R + QI+ V+ +DG Sbjct: 117 QGLIPNTYMRRE---GAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMAS--VLSSDG-- 169 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 D L + G + I G +CG +V+ E Sbjct: 170 ---------KQDPDILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDE--LS 218 Query: 186 DVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 D N + D +++VQ S+ A L LA Sbjct: 219 SSDLNLIYACTRDKTMMIDVQ----SREISEKDLAAALRLAH 256 >gi|225848390|ref|YP_002728553.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium azorense Az-Fu1] gi|257096710|sp|C1DTW6|PNP_SULAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225644547|gb|ACN99597.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium azorense Az-Fu1] Length = 707 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 90/250 (36%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR+ ++R I + V GS + G T T TL I + Sbjct: 313 IRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSLSEGQIEESIEAGEV 372 Query: 58 --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG A S R+ G + RAL ++ I + Sbjct: 373 MKRFMLHYNFPPFSTGEAKPPRATSRREIGHG----NLAERALEPLIPPEEEFPYAIRVV 428 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 D+++++G T A + G +AL D M K HVA I+ G++ Sbjct: 429 SDILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLIKAEDKF 475 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + +Q + +++ L A+D ++ Sbjct: 476 VILSDILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKVKGLTKEILEKALQQARDGRNYIL 534 Query: 232 KLQKDVISNE 241 L I Sbjct: 535 DLMYQAIPEP 544 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 86/231 (37%), Gaps = 31/231 (13%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67 + K A G+ +V+ GDT +L A + E+ + ++ YG +P Sbjct: 16 PFIIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGKIP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G VKRE G+ R + R I R +R + I+I + AD Sbjct: 76 ---GGFVKRE---GKPTDREILVARNIDRPIRPLFPKGFYND--IVITAYTLSADDKYDP 127 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 I GA ALH +G +A + + G IV+ Y + + Sbjct: 128 DVLGIVGASAALH-------------ISDIPFEGPIAGVRVCRVNGEFIVNPTYQQKAQA 174 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D++ V IV V+G A+ ++ + I LI+LQ++ Sbjct: 175 DIEI-VVAGSKDAIVMVEGGAKEVP--EEDILEAMMFGHQEIKKLIELQEE 222 >gi|289622237|emb|CBI51415.1| unnamed protein product [Sordaria macrospora] Length = 273 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 89/251 (35%), Gaps = 22/251 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMW--------- 50 +R+ GR+ N++R I R A+GS ++ G T ++ E P Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72 Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110 +K+ + + S+ +R +R GR E+Q I +AL + + Sbjct: 73 GGQSKNAEVAVNIVIAGFSSVDRKRR----GRGDKHILELQSTISQALAASLHTHLFPHS 128 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I I V+ DG A I A +A D M D G + + Sbjct: 129 TINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTA-----GSTSTYAANDEG 183 Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 P++D+++ E+ + + DS + + + ML + D + Sbjct: 184 ADPLLDMNHQEEQELPGLTVATLGDSDRVAVLVCESRVQV---SRLEGMLAVGVDGCKQV 240 Query: 231 IKLQKDVISNE 241 ++ V+ + Sbjct: 241 REILDRVVREK 251 >gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23] Length = 273 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 85/240 (35%), Gaps = 22/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52 +R+ GR+ N++R + R A+GS + G T ++ T + Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQAQAQRRGGQ 72 Query: 53 --NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110 I + S+ +R KR R R+QEI+ I +AL S V Sbjct: 73 APGRDAASIIVNVVIAGFSSVDRKKR----ARSDKRTQEIEITIAKALSSTVHTHLFPHS 128 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I + V+ DG A I A +A+ D M D G ++ + G Sbjct: 129 SITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTA-----GSTSSYAAGDDS 183 Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 P++DL+ E+ + + DS +V + + ML + D + Sbjct: 184 ADPLLDLNNQEEQELPFLTVASLGDSDRVVALVCESRVQV---SRLEGMLVVGLDGCKQV 240 >gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI 77-13-4] gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI 77-13-4] Length = 268 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 17/246 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIR----NTK 55 +R+ GR+ N++R ++ R A+GS ++ G T ++ T E+ R Sbjct: 13 LRVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQTAQRD 72 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 I S+ +R KR GR R+QEI+ I A S + I I Sbjct: 73 VAAINVNVVTAGFSSVDRKKR----GRNDKRTQEIEVTIANAFASNLHTHLFPHSSITIS 128 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 V+ DG A + +AL D M D G + + G P++ Sbjct: 129 LHVLSQDGSLLAALLNATTLALIDAGIPMTDYIAACTA-----GSTSTYAAGDDSADPLL 183 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DL+ E+ + + S + + + ML + D + + Sbjct: 184 DLNNQEEQELPFLTVATLGGSDRVAALVCESRVQV---SRLEGMLVVGVDGCKQVKQFLD 240 Query: 236 DVISNE 241 V+ ++ Sbjct: 241 QVVKDK 246 >gi|291279901|ref|YP_003496736.1| polyribonucleotide nucleotidyltransferase [Deferribacter desulfuricans SSM1] gi|290754603|dbj|BAI80980.1| polyribonucleotide nucleotidyltransferase [Deferribacter desulfuricans SSM1] Length = 700 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR ++R I + + A GS L G+T L TATL K + + Sbjct: 321 RVDGRTYTEIRPIDIEVDLLPCAHGSALFTRGETQALVTATLGTKFDSQLLDDLEGETYK 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G A R+ G + RAL S++ I + + Sbjct: 381 RFMLHYNFPPFSVGEIGFLRAPGRREIGHGF----LAERALASMLPGEDEFPYTIRVVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 +++++G + A + G +AL D ++D + + +G Y I+ D Sbjct: 437 ILESNGSSSMATVCGGSLALMDAGVPIKDVVAGIAMGLIYEGD---------DNYVILSD 487 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T++G I +Q + ++ L AK+ +++ K Sbjct: 488 IMGIEDHLGDMDFKVTGTETG-ITALQMDIKIKGLKREILEKALAQAKEGRLFILQKMKA 546 Query: 237 VISNE 241 V++ Sbjct: 547 VLAKP 551 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 31/232 (13%) Query: 13 EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67 I +K A GS +K G + +L TA E + + + G +P Sbjct: 18 PIIFETGWKAKQANGSIWIKQGGSVVLVTAVASKEASENLDFFPLTVNYIEKFYAVGKIP 77 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE G+ + I R+I R +R + QII V+ +D Sbjct: 78 ---GGFIKRE---GKPSDKETLISRLIDRPIRPLFPEGFRNETQIIAT--VVSSD----- 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD-YGEDSTID 186 V D L + +G + A+ G + G +++ D D Sbjct: 125 ------QVNSTDILALNAASAALMISDIPFEGPIGAVRVGKINGEYVINPSAAIFD---D 175 Query: 187 VDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ++ N V+ IV V+ + S++ L + I L+++QK + Sbjct: 176 LEMNIVVAGTEDSIVMVEAGMKNC--SEEDVVNALEFGHEAIKKLVEVQKRM 225 >gi|241663489|ref|YP_002981849.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii 12D] gi|240865516|gb|ACS63177.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12D] Length = 724 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ ++ Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+ + A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L AK+ ++ + Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMRAA 542 Query: 238 ISN 240 + Sbjct: 543 MGG 545 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ + +++ A G+ L+ DT +L T + + + T G +P Sbjct: 17 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYLEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R LR + Q++I V+ Sbjct: 77 ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVI--HVL-------- 120 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 ++ A D + + G V A G G +++ + + + D+ Sbjct: 121 -SMNPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E S++ + +A + I +L++ Sbjct: 178 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVR 226 >gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus] Length = 282 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 88/243 (36%), Gaps = 30/243 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R I L + A+GS ++ G+T ++ + +VP G + Sbjct: 37 RHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVFDPREVPNKTGYCVQGELFC 96 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P S R + Q +E ++ RAL V L + Q+ + V+ Sbjct: 97 EFKFAPFSHHKRKMHQ-----QDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDN 151 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G AAI A +AL + M G V A + G+ +VD E Sbjct: 152 GGSALAAAIMAASLALANAGVPMF-------------GLVTASTVGIYDHTYLVDPTDTE 198 Query: 182 DSTIDVDAN------------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 ++ + + G I E+ T + H +++ A I Sbjct: 199 ETFCCTKSVPGTVHNHGIIIQAALPQHGQISEMFVVGSVDTDTIVHSMDLISEAHKDICP 258 Query: 230 LIK 232 L++ Sbjct: 259 LLE 261 >gi|297811589|ref|XP_002873678.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp. lyrata] gi|297319515|gb|EFH49937.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp. lyrata] Length = 992 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 89/245 (36%), Gaps = 11/245 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 R+ GR +++R I GS L GDT +L T TL + Sbjct: 363 FRVDGRHLDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPGEAQSLDSLVGPPK 422 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P T KR ++ R+ G + +AL +V+ + I+ Sbjct: 423 KRFMLHYSFPPYCTNEVGKRGGLNRREVGHGT----LAEKALLAVLPPEEAFPYTVRINS 478 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ +DG T A++ G +AL D + + L V S + + D Sbjct: 479 EVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVG--LITDVDPSSGEIKDYRIVTD 536 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T +G + +Q + A D L A++ ++ + Sbjct: 537 ILGLEDHLGDMDFKIAGTRNG-VTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMER 595 Query: 237 VISNE 241 I++ Sbjct: 596 NINSP 600 Score = 60.9 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 37/229 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEYGMLPRS 69 R +S ++++A GS ++ T +L+T T + P +T +Y + Sbjct: 62 RVVSFETGKIARFANGSVVLGMDQTKVLSTVTCAKTDSPR-----DFLPLTVDYQEKQYA 116 Query: 70 TG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 G ++RE G R R+I R +R + QI+ V+ +DG Sbjct: 117 QGLIPNTYMRRE---GAPKERELLCGRLIDRPIRPLFPSGFYHEVQIMAS--VLSSDG-- 169 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 D L + G + I G +CG +V+ E Sbjct: 170 ---------KQDPDILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDE--LS 218 Query: 186 DVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADL 230 D N + D +++VQ S+ A L LA + I L Sbjct: 219 SSDLNLIYACTRDKTMMIDVQ----SREISEKDLAAALRLAHPEAIKYL 263 >gi|312127889|ref|YP_003992763.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor hydrothermalis 108] gi|311777908|gb|ADQ07394.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor hydrothermalis 108] Length = 701 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG R+ G + RAL V+ I + + Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V+ ++G T A++ G+ +AL D +K VA IS G++ G I Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDGSFI 475 Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +++ L A++ ++ Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTREIIEKALYQAREARLKILD 534 Query: 233 LQKDVISNE 241 + VI Sbjct: 535 FMQTVIDKP 543 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 RE+S + A G+ L ++GDT +L TA + + + + G + Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPRKGINFFPLTVDYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + +I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL +G ++ G + G +++ E Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ A+ +D + A++ I +++ Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMLEAIMTAQEEIKKIVE 216 >gi|312876944|ref|ZP_07736919.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor lactoaceticus 6A] gi|311796259|gb|EFR12613.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor lactoaceticus 6A] Length = 701 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 95/249 (38%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG R+ G + RAL V+ I + + Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V+ ++G T A++ G+ +AL D +K VA IS G++ G I Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDGSFI 475 Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +++ L A++ ++ Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILD 534 Query: 233 LQKDVISNE 241 K VI Sbjct: 535 FMKTVIDKP 543 Score = 88.6 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 RE+S + A G+ L ++GDT +L TA E + + + G + Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + +I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL +G ++ G + G +++ E Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ A+ +D + A++ I +++ Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMLEAIMTAQEEIKKIVE 216 >gi|317121863|ref|YP_004101866.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter marianensis DSM 12885] gi|315591843|gb|ADU51139.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter marianensis DSM 12885] Length = 752 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 96/250 (38%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55 +R GR+ +++R I + + A GS L + G T +LT A+L + +T + Sbjct: 320 IRPDGRRPDEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQIEE 379 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG A S R+ G + RAL V+ I + Sbjct: 380 FKRYMHHYNFPPYSTGEVAPLRAPSRREIGHG----ALAERALVPVLPDELEFPYTIRLV 435 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T A+ G+ +AL D +K VA ++ G++ Sbjct: 436 SEVLSSNGSTSMASTCGSTLALMDAGV-------------PIKAPVAGVAMGLIKEGDRF 482 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + +Q + A + L A+ ++ Sbjct: 483 AVLTDIQGIEDHLGDMDFKVAGTREG-VTAIQMDIKIAGVDRAVLETALEQARAGRLFIL 541 Query: 232 KLQKDVISNE 241 + +VI Sbjct: 542 EKMLEVIDKP 551 Score = 95.2 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 27/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + +++ A GS LV++GDT +L TAT + + + G + Sbjct: 21 RPLIVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYAAGRI 80 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G+ +RE G+ R+ R+ R LR + QII+ D Sbjct: 81 P---GSFFRRE---GKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPE 134 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A I GA VAL G V A+ G+L G +++ + Sbjct: 135 IAGIIGASVAL-------------GISDIPWNGPVGAVEVGLLDGELVINPTAAQREHSR 181 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T I V+ A + + + I L++ Q+ +I+ Sbjct: 182 LDLTVAGTKDA-INMVEAGAHEVP--EATILDAIFRGHEEIKKLVEFQEAIIAQ 232 >gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760] gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar SAW760] Length = 238 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 85/232 (36%), Gaps = 27/232 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR+ +MR+ + ++GS V+ G+T + + RN + + Sbjct: 10 RLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVVFGPLEGRR--RNREGAELMV 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 Y +T R +RE + E ++ + V+ L I + ++Q Sbjct: 68 SYSQATFAT--RKRREQM---HDRTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQD 122 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG A I +AL D M D V+A G + G +VD++ E Sbjct: 123 DGSVTAAVINACTLALIDAGIPMIDI-------------VSAAEGGYIDGKMVVDMNKDE 169 Query: 182 DSTIDVDANF---VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 ++ V N +M SG + +Q +L++ ++ + Sbjct: 170 ENVGTV-FNVHTAIMQKSGAVALLQ---TEGKMPLQRLGDLLSIVEEGAKTI 217 >gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001] Length = 266 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 15/244 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW---IRNTKHG 57 +R+ GR+ N++R + R + A+GS ++ G T ++ T + TK Sbjct: 13 LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQTKEA 72 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +T + S+ +R KR GR R+QE++ I +A+ + + I I Sbjct: 73 AVTVNLVVAGFSSVDRRKR----GRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLH 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ DG A + + +AL D M D G + + P++DL Sbjct: 129 VLSQDGSLLAALLNASTLALIDAGIPMTDYIAACTA-----GSTSTYAAADDGADPLLDL 183 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + E+ + + + + + + ML + D + + V Sbjct: 184 NTQEEQELPYMTVGTLGLTDRVAVLVCESRVQV---SRLEGMLAVGVDGCKQVRQFMDRV 240 Query: 238 ISNE 241 + + Sbjct: 241 VKEK 244 >gi|309781847|ref|ZP_07676580.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA] gi|308919488|gb|EFP65152.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA] Length = 722 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ ++ Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+ + A+ + D+ Sbjct: 431 ITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAV---------LTDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L AK+ ++ + Sbjct: 482 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540 Query: 238 ISN 240 + Sbjct: 541 MGG 543 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ + +++ A G+ L+ DT +L T + + + T G +P Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYLEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R LR + Q++I V+ Sbjct: 75 ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVI--HVL-------- 118 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 ++ A D + + G V A G G +++ + + + D+ Sbjct: 119 -SMNPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E S++ + +A + I +L++ Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVR 224 >gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei S13] gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei S13] Length = 713 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D V T G + +Q + +++ L AK+ ++ KD Sbjct: 489 LGDEDHLGDMDFKVVGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547 Query: 238 ISN 240 ++ Sbjct: 548 VAG 550 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|154346012|ref|XP_001568943.1| exosome complex exonuclease RRP41 [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis MHOM/BR/75/M2904] Length = 246 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 25/236 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI- 59 +RL GR+ + R + + +GSC + G + + + + + + KH + Sbjct: 13 LRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRE-SLHKQEAKHDKVL 71 Query: 60 -TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 T E + + +R R+ S++I + + RSV+ LS + QI I +V Sbjct: 72 VTCEVAVAAFAGESRR----NPQRRSKLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DG + A I A +AL D M D V IS G+L + ++DL Sbjct: 128 LQQDGNEKVACINAACLALVDANVAMRDV-------------VCCISVGLLDEHMLIDLA 174 Query: 179 YGE--DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 E + A F D+ +I+ ++ ++ D +L A+ +L + Sbjct: 175 NDELRSQCPVIVAAFTGHDTQNIIWLETTSR---LPPDSVARLLKCAEQGAQELFE 227 >gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138] gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata] Length = 246 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 90/238 (37%), Gaps = 21/238 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58 +RL GR+ N++R +A +GS ++ G+ ++T ++ + + + + Sbjct: 12 LRLDGRRWNELRRFESAINTHPHAADGSSYLEQGNNKVITLVKGPKEPTLKSQMDIQKAI 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + + S R K S + R E+Q + R V L I I+ V Sbjct: 72 LKVTVNITKFSKFERSK---SSHKNERRVLEMQTALVRTFEKNVMLHVYPRTLIDIEIHV 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DGG + G +AL D M D +V+ IS G+ P++D++ Sbjct: 129 LQQDGGIMGTLLNGISLALIDAGIAMYD-------------YVSGISVGLYDTTPLLDIN 175 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E++ + V+ S + +Q D +L + + L + Sbjct: 176 SLEENAMSAVTLGVVGKSEKLSLLQI---EDKIPLDRIENVLAIGIAGAHRIRDLMEQ 230 >gi|260893502|ref|YP_003239599.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4] gi|260865643|gb|ACX52749.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4] Length = 736 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 99/247 (40%), Gaps = 28/247 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR +R +S+ + GS L G T +L+ T +E++ + + Sbjct: 325 IRADGRGFKDIRPLSVEVGLLPRTHGSALFTRGQTQVLSVVTLGAVGDEQILDDLDLEES 384 Query: 57 GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG R R G R ++ RAL +V+ I + Sbjct: 385 KRFMHHYNFPPFSTGEVRPIRS-----PGRREIGHGALVERALEAVIPDEDAFPYTIRVV 439 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V++++G T A++ + +AL D +K VA I+ G++ Sbjct: 440 SEVLESNGSTSMASVCASSLALMDAGV-------------PIKAPVAGIAMGLIKEEDEF 486 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T++G I +Q + A +++ L A++ ++ Sbjct: 487 IVLTDIQGLEDHLGDMDFKVAGTEAG-ITALQMDIKIAGVTKEILATALAQAREARLYIL 545 Query: 232 KLQKDVI 238 ++ + + Sbjct: 546 EVMRRAL 552 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 85/237 (35%), Gaps = 31/237 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A + L K+GDT +L TAT E + + + G + Sbjct: 16 RPLVLEVGRVARQASSAVLAKYGDTVVLVTATMAPEPREGIDFFPLLVDYEERHYAVGKI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE G+ G ++ R+I R++R + ++ + + Sbjct: 76 P---GGFLRRE---GKPGEKAVLSARLIDRSIRPLFPKKMRNDVHVVATILSVDQNCAPE 129 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G + + G++ G +++ ++ Sbjct: 130 ITAMIGASAAL-------------TLSEIPFAGPIGGVIVGLVDGELVLNPTVEQEEKSL 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKDVIS 239 + T +V V+ A +D + + ++ L+++ ++ Sbjct: 177 LHLVVAGTKEA-VVMVECGAREVP--EDKVVEAIEFGHQTVKEIAAFIETLREEALA 230 >gi|118576718|ref|YP_876461.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A] gi|118195239|gb|ABK78157.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A] Length = 270 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 93/250 (37%), Gaps = 21/250 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ ++ R++++ AEGS V G T ++T ++ P + G Sbjct: 24 RIDGRRLDEPRKLTIETNAIPKAEGSARVHLGRTDVVTGVKVQPDRP-FPDVGDRGIFIC 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115 +LP + + +G E+ R++ R +R +VDLS L I I Sbjct: 83 TAEILPLAHPD-----VETGPPSPAVIELARVVDRGIRESGMVDLSKLVLLKDKSVIGIF 137 Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------SQVLKGHVAAISCG 167 D VI DG A A A+ + ++ + + +++ Sbjct: 138 ADSSVIDVDGNLFDACSYAATAAILTAKLPKWEIQDEAPVRIEGETPVPVTTIPVSVTMA 197 Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + G+ +VD + E + +D G+I +Q F+ ++ Sbjct: 198 KINGHILVDPNQDEWAVMDARITITTNSDGNICALQKGGNSG-FTHAELVKCGEISVRVG 256 Query: 228 ADLIKLQKDV 237 AD+ ++ K Sbjct: 257 ADIREIIKRA 266 >gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM 70294] gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM 70294] Length = 246 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 21/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58 +RL GR+ N++R + +A +GS ++ G+ ++T E + + Sbjct: 12 LRLDGRRWNELRRFECSINTHAHASDGSSYLEQGNNKIVTLVKGPQEPILRSQLDATKAS 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + + S R K S + R E+Q + R V L I I+ V Sbjct: 72 LNITVNITKFSKMERSK---SSHKNERRVLEMQTALVRTFEKNVMLHLYPRTLIDIEIHV 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DGG + I +AL D M D +V+AIS G+ P++D++ Sbjct: 129 LQQDGGILGSLINSITLALIDSGIAMYD-------------YVSAISIGLYDTTPLLDVN 175 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E++ + V+ S + + + D ++L + + +L + + Sbjct: 176 TLEENAMSTVTLGVIGKSEKLSLL---SVEDKIPLDRLESVLAIGIAGAHRVRELMDNEL 232 Query: 239 SNE 241 Sbjct: 233 RKH 235 >gi|17546786|ref|NP_520188.1| polynucleotide phosphorylase/polyadenylase [Ralstonia solanacearum GMI1000] gi|81504298|sp|Q8XXP6|PNP_RALSO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|17429086|emb|CAD15774.1| probable polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum GMI1000] Length = 717 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ ++ Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKEDEFAYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+G+ A+ + D+ Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L AK+ ++ + Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540 Query: 238 IS 239 + Sbjct: 541 MG 542 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ + +++ A G+ L+ DT +L T + + + T G +P Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R LR + Q++I V+ Sbjct: 75 ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVI--HVL-------- 118 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I A D + + G V A G G +++ + + + D+ Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E S++ + +A + I DL++ Sbjct: 176 DLVVAGTERAVLMV---ESEANQLSEEVMLGAVVYGHEQMQIAINAIHDLVR 224 >gi|312134904|ref|YP_004002242.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor owensensis OL] gi|311774955|gb|ADQ04442.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor owensensis OL] Length = 701 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG R+ G + RAL V+ I + + Sbjct: 373 RYMHHYNFPPFSTGESKPIRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 V+ ++G T A++ G+ +AL D +K VA IS G++ Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKEDGSFI 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +++ L AK+ ++ Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTREIIEKALYQAKEARLKILD 534 Query: 233 LQKDVISNE 241 + +I Sbjct: 535 FMQTIIDKP 543 Score = 88.6 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 RE+S + A G+ L ++GDT +L TA E + + + G + Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + +I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL +G ++ G + G +++ E Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGRIVINPTAKEREVSK 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ A+ +D + A++ I +++ Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMIEAIMTAQEEIKKIVE 216 >gi|302872107|ref|YP_003840743.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor obsidiansis OB47] gi|302574966|gb|ADL42757.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor obsidiansis OB47] Length = 701 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 93/249 (37%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG R+ G + RAL V+ I + + Sbjct: 373 RYMHHYNFPPFSTGESKPIRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 V+ ++G T A++ G+ +AL D +K VA IS G++ Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDDSFI 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +++ L AK+ ++ Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTREIIEKALYQAKEARLKILD 534 Query: 233 LQKDVISNE 241 + VI Sbjct: 535 FMQTVIDKP 543 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 27/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 RE+S + A G+ L ++GDT +L TA E + + + G + Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + +I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL +G ++ G + G +++ E Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T ++ ++ A+ +D + +A++ I +++ ++++ Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMIEAILIAQEEIKKIVEFIEEIVKE 224 >gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio ammonificans HB-1] gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio ammonificans HB-1] Length = 714 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56 +R+ GR+ +++R IS+ + A GS L G T L T TL E+ + + + Sbjct: 311 VRIDGRKPDEIRPISIEVGLLPRAHGSALFTRGQTQALVTTTLGTPEEYQLVEGLMPEEQ 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G + G R + RAL V+ I + Sbjct: 371 KRFMLHYNFPPFCVGE----ISPMRGPGRREIGHGALAERALAPVIPPEEEFPYVIRVVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 D+++++G + A + G ++L D +K VA I+ G++ Sbjct: 427 DILESNGSSSMATVCGGSLSLMDAGV-------------PIKAQVAGIAMGLIMEGDKFV 473 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L A+ ++ Sbjct: 474 VLSDILGDEDHLGDMDFKVAGTRKG-VTAIQMDLKVKGISREVLSKALEQARRGRMFILD 532 Query: 233 LQKDVISNE 241 VIS Sbjct: 533 KMDAVISEP 541 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 27/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + V+K A+GS LV GDT +L TA E V + ++ G + Sbjct: 13 RPMRFQTGKVAKQADGSVLVSQGDTIVLVTAVMSDEPREDVDFFPLLVEYRERAYAAGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ R+ R++R + Q+I + Sbjct: 73 P---GGFIKRE---GKPTDEEILKARVTDRSIRPIFPKGFRNDVQVIAFVISADQENDPA 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA ALH + V A+ + G +++ Y E D Sbjct: 127 VLAINGASAALH-------------ISRIPFEKPVGAVRVARVDGKLVINPSYEERQRAD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T+ +V V+G A+ ++ + LA + I ++K Q + Sbjct: 174 IDLIVSGTEDA-VVMVEGGAKEVP--EEEVLDAILLAHEEIKKIVKAQDE 220 >gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 246 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR+ + R + + +GSC + G + + + + + + Sbjct: 13 LRLDGRRPREARRMDIAFGTLSACDGSCDITLGQSKVCASVFGPRESLHKQEAKHDKALV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T E + + NR R+ S++I + + RSV+ LS + QI I +V+ Sbjct: 73 TCEVAVAAFAGENRR----NPQRRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q DG + A I A +AL D M D V I G+L + ++DL Sbjct: 129 QQDGNEKIACINAACLALIDANVAMRDA-------------VCCIDAGILDEHMLIDLTN 175 Query: 180 GE--DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKD 236 E + A F D+ +I+ ++ ++ D +L A++ L + + Sbjct: 176 DELRSQCPVIAAAFTGHDTRNIIWLETTSR---LPPDSATRLLKCAEEGATKLFETTMRK 232 Query: 237 VISNE 241 + Sbjct: 233 ALEEH 237 >gi|206901853|ref|YP_002250868.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus thermophilum H-6-12] gi|254782719|sp|B5YEB0|PNP_DICT6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206740956|gb|ACI20014.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus thermophilum H-6-12] Length = 693 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 25/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGW 58 R+ GR+ N++R +S V K GS L + G+T +L+ T EE++ + ++ Sbjct: 315 RVDGRKLNEIRPVSCEVGVLKRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 Y P S G R+ G + RAL ++ I + +V Sbjct: 375 YIHHYNFPPFSVGEAKPLRGPKRREIGHG----ALAERALLPLIPKEEEFPYTIRVVSEV 430 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YPI 174 + ++G T A++ G+ ++L D +K HVA ++ G++ + Sbjct: 431 LSSNGSTSMASVCGSSLSLMDAGV-------------PIKTHVAGVAMGLIKEGDRFEVL 477 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED+ +D T +G I VQ + S + L AK+ ++ + Sbjct: 478 TDIQGLEDALGGMDFKIAGTRNG-ITAVQLDIKVDGLSYEIIERTLKQAKEARYQILDIM 536 Query: 235 KDVISNE 241 + I Sbjct: 537 EKTIPQP 543 Score = 89.0 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 27/233 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 E+ + V+ A G+ LV++G+T +L T +E V + ++ G +P Sbjct: 15 ELKIDIGKVAWQATGAALVQYGETTVLVTVVASEDKKEDVDFFPLTVEYVERLYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE G+ R+I R LR + Q+I+ + T Sbjct: 75 ---GGFFKRE---GKPTEPEILFARLIDRPLRPLFAKDFRNEVQVIVTVLSYDHENSTDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I GA A+ KG + A+ G ++ +++ + Sbjct: 129 PSIIGASCAIILAGL-------------PFKGPIGAVRIGWDGNEWYINPPVTLSNSLLL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T ++ ++G + +D F + A + D+I Q++++S Sbjct: 176 DLVVAGTKDA-VLMIEGDGKEVP--EDIFLEGIIKAHSAMLDVINFQEEILSQ 225 >gi|239826663|ref|YP_002949287.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. WCH70] gi|259534128|sp|C5D9D5|PNP_GEOSW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|239806956|gb|ACS24021.1| 3' exoribonuclease [Geobacillus sp. WCH70] Length = 712 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S V GS L G T +L T A + ++ + + Sbjct: 315 IRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLGIEET 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G G R + RAL VV I + Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDNYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++++ Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTAKG-VTALQMDIKIKGLSREILEEALQQAKKGRMEILE 536 Query: 233 LQKDVISNE 241 I Sbjct: 537 HMMQTIREP 545 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RPLVVEIGQLAKQANGAVLVRYGDTVVLNTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + QI+ + D Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFAEGFRNEVQIVSMVMSVDQDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ GA +AL +G +A ++ G + G +++ + D+ Sbjct: 129 AALFGASLAL-------------TISDIPFEGPIAGVTVGRVDGEFVINPTVEQSEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ A+ ++ + + + LI Q+++ + Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEIAAQ 225 >gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis Bt4] Length = 713 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L AT +E++ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K+ Sbjct: 489 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEA 547 Query: 238 ISN 240 ++ Sbjct: 548 VAG 550 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ LV DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEVPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis LMG 19424] gi|226702643|sp|B3R3W3|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis LMG 19424] Length = 723 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKEDEFAYTIRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L AK+ ++ ++ Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILSNMQEA 542 Query: 238 IS 239 + Sbjct: 543 MG 544 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 ++ + +++ A G+ LV DT +L T + + + + T G +P Sbjct: 17 KVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKSPKPGQDFFPLTVDYIEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R LR + Q+++ + + Sbjct: 77 ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSLNPEVPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A G G +++ + +T D+ Sbjct: 131 PALIGASAALAVSGI-------------PFNGPVGAARVGYKDGQYLLNPTRSQIATSDL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236 D T+ ++ +E S+D + + I + +L ++ Sbjct: 178 DLVVAGTERAVLMV---ESEANQLSEDVMLGAVVYGHEQMQTAINAIHELVRE 227 >gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis E264] gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis TXDOH] gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis E264] gi|123726649|sp|Q2SZN9|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia thailandensis E264] Length = 713 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L AT +E++ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K+ Sbjct: 489 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEA 547 Query: 238 ISN 240 ++ Sbjct: 548 VAG 550 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ LV DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEVPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301] gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301] Length = 709 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ V GS L G+T L ATL +E+V ++ Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQVIDALQGEFKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ R+L + + A + + + Sbjct: 376 RFMLHYNMPPYATGETGRVGTPKRREIGHG----RLAKRSLIAALPDQADFDYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + + +G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGLIKEGNRVAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + + L AK+ A ++ + K Sbjct: 483 LGDEDHLGDMDFKVAGTEDG-ITALQMDIKITGITSQIMQVALAQAKEGRAHILGIMKAA 541 Query: 238 ISN 240 +S+ Sbjct: 542 MSS 544 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 85/237 (35%), Gaps = 46/237 (19%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 ++L +S+ A+ + +V +GDT +L T + +V + + T G +P Sbjct: 16 LTLETGEISRQADAAVMVSYGDTVVLVAVTSKSEVKAGQDFFPLTVDYMEKTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV----IQADGG 124 G KRE GR + R+I R LR + + Q++ I AD Sbjct: 75 --GGFFKRE---GRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSSDPEIDAD-- 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI GA A+ G + A G + +++ + Sbjct: 128 --IPAIIGASAAMSLSGI-------------PFFGPLGAARVGYINDEYVLNPTKAQLEE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAER---------ATFSQDHFFAMLNLAKDRIADLIK 232 ++D T++ ++ V+ A+ F + A++ + IA+L Sbjct: 173 TELDLVVAATETA-VMMVESEAKELSEEVMLGAVVFGHEQMQAVIKM----IAELAA 224 >gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15] gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15] Length = 251 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 13/243 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57 +RL GR+ N++R I A+GS ++ G+T +L + T + + N Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGKQAGQRGGNGGQA 72 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + E S G RS+E++ + A V+ L I ++ Sbjct: 73 KVEVEINFAGFSGME----RRRRGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTITLNIH 128 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +I DG A I + +AL D M D + ++ + P++DL Sbjct: 129 IISQDGSLLAACINASTLALIDAGIPMTDYLVACTAAS---SASSSAADNASAEDPLLDL 185 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + E+ + + +S + + ML + + L + +V Sbjct: 186 NTLEEQELPFLTVGTLGESDKVAVCVL---ETRVRMERLEGMLAVGIEGCKRLRSILDEV 242 Query: 238 ISN 240 + Sbjct: 243 VKG 245 >gi|163855920|ref|YP_001630218.1| polynucleotide phosphorylase/polyadenylase [Bordetella petrii DSM 12804] gi|226702623|sp|A9IGJ9|PNP_BORPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|163259648|emb|CAP41949.1| polyribonucleotide nucleotidyltransferase [Bordetella petrii] Length = 719 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPIEIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL S++ I + + Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHG----RLAKRALVSLLPAHEDFQYTIRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D ++D + +L A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPLQDHVAGVAMGLILDDGKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G I +Q + +++ L A++ ++ ++ Sbjct: 487 LGDEDHLGDMDFKVAGTQNG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMREA 545 Query: 238 ISN 240 + Sbjct: 546 LEG 548 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 78/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + L +++ A G+ LV DT +L T + + + T G +P Sbjct: 16 VVLETGEIARQASGAVLVSVDDTVVLATVVAAKKAKPGQTFFPLTVDYIEKTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+ + R+I R LR + Q+++ + + Sbjct: 75 --GGFFKRE---GKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVLHTVSVNPEIDPDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ + + +D Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVGYVDGQYVLNPTATQLKSSQMD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237 T++ ++ +E S+D + + I + L +D Sbjct: 177 LVVAGTENAVLMV---ESEAKQLSEDVMLGGVVYGHEQMQAAINAIHDLVRDA 226 >gi|157877098|ref|XP_001686881.1| exosome complex exonuclease RRP41 [Leishmania major strain Friedlin] gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain Friedlin] Length = 246 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR+ + R + + +GSC + G + + + + G + Sbjct: 13 LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T E + + NR R+ S++I + + RSV+ LS + QI I +V+ Sbjct: 73 TCEVAVAAFAGENRR----NPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q DG + A + A +AL D M D V I G+L + ++DL Sbjct: 129 QQDGNEKIACVNAACLALIDANVAMRDA-------------VCCIDAGILDEHMLIDLTS 175 Query: 180 GE--DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QKD 236 E + A F D+ +I+ ++ ++ D +L A++ L + + Sbjct: 176 NELRSQCPVIAAAFTGHDTRNIIWLETASR---LPPDSVTRLLKCAEEGATKLFEATMRK 232 Query: 237 VISNE 241 + Sbjct: 233 ALEEH 237 >gi|312793244|ref|YP_004026167.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180384|gb|ADQ40554.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 701 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG R+ G + RAL V+ I + + Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V+ ++G T A++ G+ +AL D +K VA IS G++ G I Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDGSFI 475 Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +++ L A++ ++ Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILD 534 Query: 233 LQKDVISNE 241 + VI Sbjct: 535 FMQTVIDKP 543 Score = 88.6 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 RE+S + A G+ L ++GDT +L TA E + + + G + Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + +I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL +G ++ G + G +++ E Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ A+ +D + A++ I +++ Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMLEAIMTAQEEIKKIVE 216 >gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia thailandensis MSMB43] Length = 706 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L AT +E++ + Sbjct: 315 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K+ Sbjct: 482 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEA 540 Query: 238 ISN 240 ++ Sbjct: 541 VAG 543 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 10 KVRLETGEIARQASGAVVVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 69 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 70 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 123 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 124 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTRAQIKASRL 170 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 171 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 219 >gi|300691020|ref|YP_003752015.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum PSI07] gi|299078080|emb|CBJ50723.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum PSI07] Length = 722 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ + Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALSGEYRD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKEDEFAYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+G+ A+ + D+ Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L AK+ ++ + Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540 Query: 238 IS 239 + Sbjct: 541 MG 542 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ + +++ A G+ L+ DT +L T + + + T G +P Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R LR + Q+++ V+ Sbjct: 75 ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVV--HVL-------- 118 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I A D + + G V A G G +++ + + + D+ Sbjct: 119 -SINPEVPA--DIPALVASSAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236 D T+ ++ +E S+D + + I + L ++ Sbjct: 176 DLVVAGTERAVLMV---ESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVRE 225 >gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 406e] gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 406e] Length = 713 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ KD Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547 Query: 238 ISN 240 ++ Sbjct: 548 VAG 550 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 77/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + T + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKTSRL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1655] gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1655] Length = 713 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ KD Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547 Query: 238 ISN 240 ++ Sbjct: 548 VAG 550 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei K96243] gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 1710b] gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 668] gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 1106a] gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 305] gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei DM98] gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 14] gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 91] gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 9] gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei B7210] gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 7894] gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei NCTC 13177] gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei 112] gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomallei BCC215] gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 576] gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|237811578|ref|YP_002896029.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei MSHR346] gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710a] gi|81380050|sp|Q63VN7|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123599745|sp|Q3JUB3|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470947|sp|A3NTA2|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470948|sp|A3N7L3|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei K96243] gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710b] gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 668] gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106a] gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 305] gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 576] gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9] gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei MSHR346] gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1106b] gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei 1710a] Length = 713 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ KD Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547 Query: 238 ISN 240 ++ Sbjct: 548 VAG 550 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|299066328|emb|CBJ37512.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum CMR15] Length = 717 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ ++ Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+G+ A+ + D+ Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L AK+ ++ + Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540 Query: 238 IS 239 + Sbjct: 541 MG 542 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ + +++ A G+ L+ DT +L T + + + T G +P Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R LR + Q++I V+ Sbjct: 75 ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVI--HVL-------- 118 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I A D + + G V A G G +++ + + + D+ Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236 D T+ ++ +E S++ + + I + + +D Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDMVRD 225 >gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei ATCC 23344] gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Burkholderia mallei GB8 horse 4] gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei SAVP1] gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei NCTC 10229] gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei NCTC 10247] gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei PRL-20] gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 10399] gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH] gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU] gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei 2002721280] gi|81604650|sp|Q62IN1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470944|sp|A3MI97|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470945|sp|A2S463|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470946|sp|A1V2L2|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 23344] gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei SAVP1] gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC 10229] gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC 10247] gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH] gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU] gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei 2002721280] gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC 10399] gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Burkholderia mallei GB8 horse 4] gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei PRL-20] Length = 713 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ KD Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547 Query: 238 ISN 240 ++ Sbjct: 548 VAG 550 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|312622695|ref|YP_004024308.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kronotskyensis 2002] gi|312203162|gb|ADQ46489.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor kronotskyensis 2002] Length = 701 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG R+ G + RAL V+ I + + Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V+ ++G T A++ G+ +AL D +K VA IS G++ G I Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDGSFI 475 Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +++ L A++ ++ Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILD 534 Query: 233 LQKDVISNE 241 + VI Sbjct: 535 FMQTVIDKP 543 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 RE+S + A G+ L ++GDT +L TA E + + + G + Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + +I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL +G ++ G + +++ E Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSK 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ A+ S+D + A++ I +++ Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKE--VSEDIMLEAIMRAQEEIKKIVE 216 >gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa AUO158] gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa AUO158] Length = 722 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L AT +E++ + Sbjct: 330 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 389 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 390 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSAEEFGYSIRVVSE 445 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 446 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 496 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ +++ + Sbjct: 497 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILRKMTEA 555 Query: 238 ISN 240 +S Sbjct: 556 VSG 558 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 25 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 84 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 85 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 138 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 139 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNDQYVLNPTREQLKASRL 185 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 186 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 234 >gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16] gi|122947022|sp|Q0KCT4|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16] Length = 723 Score = 128 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L A++ ++ ++ Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAREGRLHILHKMQEA 542 Query: 238 IS 239 + Sbjct: 543 MG 544 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 31/232 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 + + +++ A G+ LV DT +L T + + + T G +P Sbjct: 18 VRMETGEIARQAGGAVLVDVEDTVVLATVVAAKNPKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R LR + Q++I + + Sbjct: 77 --GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVVSLNPEVPADIP 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G V A G G +++ + +T D+D Sbjct: 132 ALIGASAALAVSGI-------------PFNGPVGAARVGYKDGQYLLNPTRSQLATSDLD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236 T+ ++ +E S+D + + I + +L ++ Sbjct: 179 LVVAGTERAVLMV---ESEANQLSEDVMLGAVVYGHEQMQIAINAIHELVRE 227 >gi|91774427|ref|YP_544183.1| polynucleotide phosphorylase/polyadenylase [Methylobacillus flagellatus KT] gi|123078691|sp|Q1GXD2|PNP_METFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91708414|gb|ABE48342.1| 3' exoribonuclease [Methylobacillus flagellatus KT] Length = 714 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V GS L G+T L ATL I + G Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYAD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL +V+ I + + Sbjct: 375 RFMLHYNMPPYATGETGRVGTPKRREIGHG----RLAKRALLAVLPSQEEFGYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L D ++ + + +G+ A+ + D+ Sbjct: 431 ITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRVAV---------LTDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+SG I +Q + + + L+ AK+ ++ L K+ Sbjct: 482 LGDEDHLGDMDFKVAGTESG-ITALQMDIKITGITAEIMRVALSQAKEGRLHILGLMKEA 540 Query: 238 ISNE 241 + + Sbjct: 541 VGEQ 544 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 33/207 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 E++L +++ A+G+ +V +GDT +L + + +V + + T G +P Sbjct: 14 ELTLETGEIARQADGAVMVSYGDTVVLVSVVGKREVKEGQDFFPLTVDYQEKTYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV----IQADG 123 G KRE GR + R+I R LR + + Q++ I AD Sbjct: 74 ---GGFFKRE---GRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVMSSDPEIDAD- 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AI GA AL G + A G + G +++ + Sbjct: 127 ---IPAIIGASAALAISGI-------------PFYGPIGAARVGYINGEYVLNPTASQLK 170 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERAT 210 +D T+S ++ V+ A+ Sbjct: 171 ETALDLVVAATESA-VLMVESEAKELP 196 >gi|332285140|ref|YP_004417051.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7] gi|330429093|gb|AEC20427.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7] Length = 715 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS++ V A GS L G+T L ATL +E++ I Sbjct: 320 RIDGRDTRTVRPISVSLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDSIMGEHRD 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P +TG + + R+ G R+ RAL S + + I I + Sbjct: 380 RFMLHYNFPPFATGETGRFGSPKRREIGHG----RLAKRALVSSLPEAQDFQYTIRIVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +A+ D +K HVA ++ G++ Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGV-------------PVKDHVAGVAMGLIKDGGKFAV 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 483 LTDILGDEDHLGDMDFKVAGTVTG-ITALQMDIKIQGITREIMQVALAQAKEGRLHILGK 541 Query: 234 QKDVI 238 K+ + Sbjct: 542 MKEAL 546 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 79/232 (34%), Gaps = 36/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 + L +++ A G+ LV DT +L T + + + T G +P Sbjct: 16 VVLETGEIARQASGAVLVSIDDTVVLATVVGAKNAKPGQDFFPLTVDYVEKTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R LR + Q+I+ + + A Sbjct: 75 --GGFFKRE---GRPSEKEILTSRLIDRPLRPLFPEGFYNEVQVILHTVSVNPEIDPDIA 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ + ++ Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVGYIDGQYVLNPTSSQIQASQMN 176 Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232 T++ ++ E Q +E F D A +N I DL+ Sbjct: 177 LVVAGTEAAVLMVESEAQNLSEEVMLGGVMFGHDQMQAAIN----AIHDLVA 224 >gi|242025392|ref|XP_002433108.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518649|gb|EEB20370.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 278 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 87/253 (34%), Gaps = 32/253 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR R+I + V A+GS ++ +T +L + ++P T +G I Sbjct: 41 IRKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPNGEIY 100 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 E+ P R +++ ++ R+L V + Q+ + ++ Sbjct: 101 CEFKFAPFYGLERKGHIM-----DLEEKDLSIILKRSLEPAVCRHEFPNFQVDVYALLLD 155 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG +AAIT + + +++ G+ +D ++ Sbjct: 156 NDGSCLSAAIT-------------AAGLALADAGIPMYDILTSVTLGIHNDMIFIDPNFE 202 Query: 181 EDSTI-------DVDANFV----MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 E+ + + M + + E+ + T S + ++L + Sbjct: 203 EEKFCKSFFKNKTSEIGIISLSYMPEMAQVTEI---TQSGTVSINTILKSMDLLISKCKT 259 Query: 230 LIKLQKDVISNEV 242 + L K + + V Sbjct: 260 ISDLTKKCLMDNV 272 >gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit Rrp41-like protein [Tribolium castaneum] Length = 282 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 18/188 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R+I L V A+GS ++ T ++ + ++P + G I Sbjct: 42 RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYC 101 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P S R + Q Q+ ++ +AL S V + Q+ I V+ Sbjct: 102 EFKFAPFSCHKRRLHQ-----QDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHN 156 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG +AAIT A VAL M D + +++ + + +VD E Sbjct: 157 DGAALSAAITAAGVALAHAGIPMYDL-------------ITSVTLAVQGNHLLVDPTLEE 203 Query: 182 DSTIDVDA 189 + V Sbjct: 204 ERLCQVPL 211 >gi|317402106|gb|EFV82699.1| polyribonucleotide nucleotidyltransferase [Achromobacter xylosoxidans C54] Length = 718 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL ++ I I + Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHG----RLAKRALIPLLPAPEDFQYTIRIVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D ++D + +L G A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G + +Q + +++ L A++ ++ K+ Sbjct: 487 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILGKMKEA 545 Query: 238 I 238 + Sbjct: 546 L 546 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 36/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + L +++ A G+ +V DT +L T + + + T G +P Sbjct: 16 VVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYIEKTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+ + R+I R LR + Q++I + + Sbjct: 75 --GGFFKRE---GKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEIDPDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G ++ + + +D Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVGYIDGQYAINPTASQLKSSKLD 176 Query: 189 ANFVMTDSGHIV----EVQGSAE----RATFSQDHFFAMLNLAKDRIADLIK 232 T++ ++ Q S E + + A++N I +L+K Sbjct: 177 LVVAGTENAVLMVESEADQLSEEIMLGGVVYGHEQMQAVIN----AIHELVK 224 >gi|222529049|ref|YP_002572931.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor bescii DSM 6725] gi|257096680|sp|B9MR54|PNP_ANATD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222455896|gb|ACM60158.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor bescii DSM 6725] Length = 701 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG R+ G + RAL V+ I + + Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V+ ++G T A++ G+ +AL D +K VA IS G++ G I Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDGSFI 475 Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +++ L A++ ++ Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILD 534 Query: 233 LQKDVISNE 241 + VI Sbjct: 535 FMQTVIDKP 543 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 RE+S + A G+ L ++GDT +L TA E + + + G + Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + +I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL +G ++ G + +++ E Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSK 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ A+ S+D + A++ I +++ Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKE--VSEDIMLEAIMRAQEEIKKIVE 216 >gi|66472734|ref|NP_001018322.1| exosome complex exonuclease MTR3 [Danio rerio] gi|123905166|sp|Q6P0I8|EXOS6_DANRE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome component 6; AltName: Full=mRNA transport regulator 3 homolog gi|63101434|gb|AAH95173.1| Exosome component 6 [Danio rerio] gi|68262418|gb|AAH65602.2| Exosome component 6 [Danio rerio] gi|182890526|gb|AAI64622.1| Exosc6 protein [Danio rerio] Length = 271 Score = 127 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 25/244 (10%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWITAEYG 64 R +R + + A+GS ++ G+T ++ + ++ + K G + ++ Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 + P S VKR A R ++ + +LR V L QI ++ V++ DG Sbjct: 97 LAPFSC---VKRGAWIQGSEER--DLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGS 151 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS- 183 A+T A +AL D M D V + +VD Y E+ Sbjct: 152 VLAHAVTCASMALADAGIEMYDI-------------VLGCTLRQSGNACLVDPSYAEECG 198 Query: 184 -----TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + ++ +V G +D + D L + + + Sbjct: 199 SWQEGYGDNQGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQAL 258 Query: 239 SNEV 242 + V Sbjct: 259 TRAV 262 >gi|300703637|ref|YP_003745239.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum CFBP2957] gi|299071300|emb|CBJ42618.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum CFBP2957] Length = 720 Score = 127 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ ++ Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+G+ A+ + D+ Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L AK+ ++ + Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540 Query: 238 IS 239 + Sbjct: 541 MG 542 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ + +++ A G+ L+ DT +L T + + + T G +P Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R LR + Q+++ V+ Sbjct: 75 ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVV--HVL-------- 118 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I A D + + G V A G G +++ + + + D+ Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236 D T+ ++ +E S++ + + I + L ++ Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225 >gi|254585869|ref|XP_002498502.1| ZYRO0G11814p [Zygosaccharomyces rouxii] gi|238941396|emb|CAR29569.1| ZYRO0G11814p [Zygosaccharomyces rouxii] Length = 245 Score = 127 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 93/245 (37%), Gaps = 25/245 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58 +R+ GR+ N++R + +A +GS ++ G+ ++T ++ + + + Sbjct: 12 LRVDGRRWNELRRFDCSINTHSHAADGSSYLEQGNNKIITLVKGPKEPSLRSQMDPTKAL 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + + S R K S + R EIQ + R V L I I+ V Sbjct: 72 LKVSVNITKFSKTERSK---TSHKNERRVLEIQTALTRTFNKNVMLHIYPRTLIDIEIHV 128 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +Q DGG I G +AL D M D +++ +S G+ P+++++ Sbjct: 129 LQQDGGLVGTLINGITLALIDAGIAMFD-------------YISGVSVGLYDTTPLLEVN 175 Query: 179 YGEDSTI-DVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E++ + V V T+ ++ V D ++L + + +L Sbjct: 176 SLEENVMSSVTLGVVGKTEKLSLLLV-----EDKIPLDRLESVLAIGIAGAHRVRELMDS 230 Query: 237 VISNE 241 + Sbjct: 231 ELRKR 235 >gi|83746292|ref|ZP_00943345.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum UW551] gi|83727042|gb|EAP74167.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum UW551] Length = 720 Score = 127 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ ++ Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+G+ A+ + D+ Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L AK+ ++ + Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540 Query: 238 IS 239 + Sbjct: 541 MG 542 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ + +++ A G+ L+ DT +L T + + + T G +P Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R LR + Q+++ V+ Sbjct: 75 ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVV--HVL-------- 118 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I A D + + G V A G G +++ + + + D+ Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236 D T+ ++ +E S++ + + I + L ++ Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225 >gi|322503669|emb|CBZ38755.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 246 Score = 127 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR+ + R + + +GSC + G + + + + G + Sbjct: 13 LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T E + + NR R+ S++I + + RSV+ LS + QI I +V+ Sbjct: 73 TCEVAVAAFAGENRR----NPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q DG + A + A +AL D M D V I G+L + ++DL Sbjct: 129 QKDGNEKIACVNAACLALIDANVAMRDA-------------VCCIDAGILDEHMLIDLTN 175 Query: 180 GE--DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKD 236 E + A F D+ +I+ ++ ++ D +L A++ L + + Sbjct: 176 DELRSQCPVIAAAFTGHDTRNIIWLETASR---LPPDSAARLLKCAEEGATKLFETAMRK 232 Query: 237 VISNE 241 + Sbjct: 233 ALEEH 237 >gi|167044511|gb|ABZ09186.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG6J21] Length = 272 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 25/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R ++ R + + V +A GS + GDT +++ ++ P + G Sbjct: 24 RIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGIKVQPDKP-FPDMGDKGIFIC 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115 +LP + + A +G EI R++ R +R ++DLS + I + Sbjct: 83 TAEILPLAHPS-----AETGPPQPNVIEIARVVDRGIRESGMIDLSQMVLQKDKSVIGVF 137 Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQ----VLKGHVAAISC 166 D V DG A A A+ M+D Q + +++ Sbjct: 138 ADNVVTDHDGNLFDACSYAAVAAIITSKIPKWEMKDDKPVLIEDQASDTPITTIPISVTM 197 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-- 224 G++ + IVD + E +D G+IV +Q FS + L+ Sbjct: 198 GLIGEFIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSDG-FSLEQLVKCAELSIAI 256 Query: 225 -DRIADLIK 232 +I D+IK Sbjct: 257 GKKIRDIIK 265 >gi|294659898|ref|XP_462331.2| DEHA2G18194p [Debaryomyces hansenii CBS767] gi|199434319|emb|CAG90837.2| DEHA2G18194p [Debaryomyces hansenii] Length = 245 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 83/236 (35%), Gaps = 22/236 (9%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58 +R+ GR+ N++R ++GS ++ G+T ++ E N+ Sbjct: 12 LRIDGRRWNELRRFECRINTHPSSSDGSSYIEQGNTKIICMVQGPMEPSLRSQTNSSKAS 71 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I + ST R KR + R E++ + R V I I+ V Sbjct: 72 IEINLSVANFSTIERKKRL----KNEKRLIELKTTLERTFEQSVICKLYPRTVIQINLHV 127 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + DGG +AL D M D +V+AI+ G+ P++DL+ Sbjct: 128 LCQDGGLLAGMTNAITLALIDAGIAMYD-------------YVSAINAGLYDQTPLLDLN 174 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 E++ + V+ S + + D ++L + + L Sbjct: 175 TLEENDMSCLTIGVVGKSEKLALLLL---EDKMPLDMLESVLAIGIAGGHRVRDLM 227 >gi|293603832|ref|ZP_06686247.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii ATCC 43553] gi|292817669|gb|EFF76735.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii ATCC 43553] Length = 720 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ R+L ++ I I + Sbjct: 380 RFMMHYNMPPFATGETGRIGVPKRREIGHG----RLAKRSLIPLLPAPEDFQYTIRIVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D ++D + +L G A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G + +Q + +++ L A++ ++ K+ Sbjct: 487 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILTKMKEA 545 Query: 238 I 238 + Sbjct: 546 L 546 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 36/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + L +++ A G+ +V DT +L T + + + T G +P Sbjct: 16 VVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYIEKTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+ + R+I R LR + Q++I + + A Sbjct: 75 --GGFFKRE---GKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEIDPDIA 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G ++ + + +D Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVGYIDGQYALNPTASQLKSSKLD 176 Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232 T++ ++ E Q +E + + A++N I +L+K Sbjct: 177 LVVAGTENAVLMVESEAQQLSEEIMLGGVVYGHEQMQAVIN----AIHELVK 224 >gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae BGR1] gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae BGR1] Length = 709 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L AT +E++ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+ + A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEDNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G + +Q + +++ L AK+ ++ K+ Sbjct: 489 LGDEDHLGDMDFKVAGTEAG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKES 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I I + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSINPEVPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNQYVLNPTRDQIKASSL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|319778373|ref|YP_004129286.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis MCE9] gi|317108397|gb|ADU91143.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis MCE9] Length = 733 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R IS+ V GS L G+T L ATL K I ++ G + Sbjct: 320 RIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALVIATLGTKQDEQIVDSVMGEVRE 379 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 380 HFMLHYNMPPFATGEVGRFGSPKRREIGHG----RLAKRALIATLPNQDDFQYTIRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D +ED + + +G+ A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVEDHVAGVAMGLIKEGNKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + +++ L AK+ ++ K+ Sbjct: 487 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKIQGINKEIMQVALAQAKEGRLHILGKMKEA 545 Query: 238 ISN 240 IS Sbjct: 546 ISG 548 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 29/203 (14%) Query: 37 LLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR 96 ++ + + + + G +P G KRE G+ + R+I R Sbjct: 44 VVAAKEAKAGQDFFPLTVDYVEKSYAAGRIP---GGYFKRE---GKPTEKETLTSRLIDR 97 Query: 97 ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156 LR + Q+II + + A++ G+ AL Sbjct: 98 PLRPLFPEGFYNEVQVIIHVLSVDPEIDPDIASMIGSSAALS-------------ISGVP 144 Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216 G + A G + G +++ + D+D T+ ++ +E S++ Sbjct: 145 FDGPIGAARVGYINGQYVLNPSESQIKDSDMDLVVAGTEQAVLMV---ESEAKQLSEEIM 201 Query: 217 F-------AMLNLAKDRIADLIK 232 L LA + I DL+K Sbjct: 202 LGGVVFGHEQLQLAINAIHDLVK 224 >gi|239618017|ref|YP_002941339.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF 19.5.1] gi|197321135|gb|ACH68639.1| polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF 19.5.1] gi|239506848|gb|ACR80335.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF 19.5.1] Length = 737 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R+ GR+ ++R I+ + GS L G+T L T T ++E++ + Sbjct: 323 LRMDGRKTTEIRPITCELDILPRTHGSALFTRGETQSLATVTLGAPIDEQIIDTLLEEGS 382 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + R+ G + RAL++++ I + Sbjct: 383 KTFMLHYNFPPFSTGEVKRMRGPGRREIGHGH----LAERALKNMIPPEEEFPYTIRVVS 438 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + +AL +K HVA ++ G++ Sbjct: 439 EILESNGSSSMATVCSGSLALMAAGV-------------PIKRHVAGVAMGLIQEPDETV 485 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + A S++ L AK+ ++ Sbjct: 486 ILTDILGNEDHYGDMDFKVAGTRDG-ITAFQMDVKVAGVSEEIMLKALYQAKEARMKILD 544 Query: 233 LQKDVISNE 241 L + IS Sbjct: 545 LMYETISEP 553 Score = 88.2 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 33/237 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 R+I + K + G+C V+F D+ +L T E+ + +T E+ Sbjct: 14 RKIIVEHGKMAKQSHGACFVRFADSAILATVNASEEP---LPQAGFVPLTVEFQEKFYAA 70 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G VKRE G+ + R+I R +R + Q+I+ D Sbjct: 71 GKIP---GGFVKRE---GKPSENAILSARLIDRPIRPLFPKGMSNEVQVIVTVLSADPDN 124 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 T I + +AL+ G VA + G + G I E Sbjct: 125 PPDTIGIFASSLALN-------------ISPIPFDGMVAGVRVGYVDGEYIFFPTSEELE 171 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++D T + V+G A+ S++ L A + I L++ Q++++S Sbjct: 172 KSELDIVVAGTKEA-VTMVEGEAKE--VSEEVMLKALMKAHEAIKQLVEFQEEIVSE 225 >gi|268679240|ref|YP_003303671.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum deleyianum DSM 6946] gi|268617271|gb|ACZ11636.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum deleyianum DSM 6946] Length = 746 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 94/243 (38%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54 +R GR+ ++R IS+ + A GSCL G T L ATL + +++ Sbjct: 343 VRADGRKLTEIRPISIETNLLPLAHGSCLFTRGQTQALVIATLGNDKDAQMYDLLTEKSS 402 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G A R+ G + RAL VVD++ L + I + Sbjct: 403 VSDTFMVNYNFPGFSVGEASPLRAPGRRELGHG----NLARRALEPVVDINRL--QTIRL 456 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A I G +AL +E + V +G A+ + Sbjct: 457 VSEILESNGSSSMATICGGALALKAAGVEIEKLVAGIAMGLVFEGDKHAV---------L 507 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D T G I +Q + S+D L A++ ++ + Sbjct: 508 SDIMGLEDHDGDMDFKVAGTKDG-ITALQMDIKLGGISRDVLKEALYQAREGREHILAIM 566 Query: 235 KDV 237 + Sbjct: 567 EKA 569 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 73/225 (32%), Gaps = 36/225 (16%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75 V+K A G+ L+K +T +L T ++ + +T +Y + G +K Sbjct: 19 VAKQAAGAALLKIKNTVILATVARDDTQ----VSENFVPLTVQYVEKSYAVGKIPGGYIK 74 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE + G R+I R+LR + QI + A+ + Sbjct: 75 RET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQITVFVLSCDAEVDLQV-------- 123 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 + + + VA + G + G +V+ +D T Sbjct: 124 -----AALNAAGAALYLSDIPVNKAVAGVRIGYVDGAYVVNPSNSLLKKSTLDLYVAGTK 178 Query: 196 SGHIVEVQG----SAERATFSQDHFFAMLN-------LAKDRIAD 229 ++ ++ S E + ML+ +AK I + Sbjct: 179 E-ELLMIEMRSIASMESVSLPVMAIDPMLDPTLAENMMAKQVINE 222 >gi|289548545|ref|YP_003473533.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM 14484] gi|289182162|gb|ADC89406.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM 14484] Length = 704 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 87/247 (35%), Gaps = 23/247 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH----- 56 R+ GR +R I++ + GS + G T T TL + + + Sbjct: 311 RIDGRGPKDIRPITIELHPFERPHGSAIFTRGQTQAFATVTLGAPEEAQMVESIYEGEVF 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG R+ G + RAL ++ I + Sbjct: 371 KRFMLHYNFPPFSTGEARSWGPPRRREIGHG----ALAERALEPLIPPEEEFPYIIRVVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G T A + A +AL D M+ + + +++G I + D Sbjct: 427 NILESNGSTSMATVCAASLALFDAGVPMKKHAAGIAMGLIMEGDRYVI---------LSD 477 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK- 235 + ED D+D T G I VQ + ++ L AK+ L LQK Sbjct: 478 ILGDEDQLGDMDFKVAGTKDG-ITSVQMDIKVKGLKKEIMREALQQAKEG--RLYILQKM 534 Query: 236 -DVISNE 241 + I Sbjct: 535 YEAIPEP 541 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 34/238 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67 I + +K A+G+ +V+ GDT +L TA + E+ V + ++ +G +P Sbjct: 13 PIIIETGHYAKQADGAVVVRQGDTAVLVTAVMSEEPQTNVDFVPLTVDYREQSSAWGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G +KRE G+ R + R+I R +R + +++ + AD Sbjct: 73 ---GGFIKRE---GKPTDREILVSRVIDRPIRPLFPEGFSHD--VVVTALTLSADDKYDP 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AITGA ALH +G +A + + G + + Y E Sbjct: 125 DVLAITGASAALH-------------ISRIPFEGPIAGVRICRVEGRLVANPTYEERQKA 171 Query: 186 DVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D VM S IV V+G A+ ++ L + I DL++ Q++ + +++ Sbjct: 172 --DLEIVMAGSKDAIVMVEGGAKE--VDEEVLTEALYFGLEVIQDLLRAQEE-LRDKI 224 >gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102] Length = 291 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 89/254 (35%), Gaps = 32/254 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----------W 50 +R+ GR+ N++R + R A+GS + G T ++ T + Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQVQAQRRGAQ 72 Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKR---EAVSGRQ-----------GGRSQEIQRMIGR 96 I + S+ +R KR + GR+ G R+QEI+ I + Sbjct: 73 ASGRDAASIIVNVVIAGFSSVDRKKRGRNDKEGGREIEHRALTWRGYGRRTQEIEITIAK 132 Query: 97 ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156 AL S V I + V+ DG A I A +A+ D M D Sbjct: 133 ALSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTA--- 189 Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216 G ++ + G P++DL+ E+ + + DS +V + + Sbjct: 190 --GSTSSYAAGDDSADPLLDLNNQEEQELPFLTVASLGDSDRVVALVCESRVQV---SRL 244 Query: 217 FAMLNLAKDRIADL 230 ML + D + Sbjct: 245 EGMLVVGLDGCKQV 258 >gi|311104446|ref|YP_003977299.1| polyribonucleotide nucleotidyltransferase [Achromobacter xylosoxidans A8] gi|310759135|gb|ADP14584.1| polyribonucleotide nucleotidyltransferase [Achromobacter xylosoxidans A8] Length = 720 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ R+L ++ I I + Sbjct: 380 RFMMHYNMPPFATGETGRIGVPKRREIGHG----RLAKRSLIPLLPAPEDFQYTIRIVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D ++D + +L G A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G + +Q + +++ L A++ ++ K+ Sbjct: 487 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILGKMKEA 545 Query: 238 I 238 + Sbjct: 546 L 546 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + L +++ A G+ +V DT +L T + + + T G +P Sbjct: 16 VVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYIEKTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+ + R+I R LR + Q++I + + A Sbjct: 75 --GGFFKRE---GKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEIDPDIA 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G ++ + + +D Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVGYIDGQYAINPTASQLKSSKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S++ + + I + +L KD Sbjct: 177 LVVAGTENAVLMV---ESEADQLSEEIMLGGVVYGHQQMQAVINAIHELVKDA 226 >gi|146297069|ref|YP_001180840.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|187470950|sp|A4XL64|PNP_CALS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145410645|gb|ABP67649.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 701 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R + + GS L K G T +LT ATL K M + + Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG R+ G + RAL V+ I + + Sbjct: 373 RYMHHYNFPPYSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 V+ ++G T A++ G+ +AL D +K VA IS G++ Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKEDGSFI 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +++ L A++ ++ Sbjct: 476 TLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILD 534 Query: 233 LQKDVISNE 241 + VI Sbjct: 535 FMQTVIDKP 543 Score = 88.6 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 RE+S + A G+ L ++GDT +L TA E + + + G + Sbjct: 13 RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + +I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL +G ++ G + G +++ E Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ A+ +D + A++ I +++ Sbjct: 174 LHLVVSGTKD-KVMMIEAGAQEIP--EDIMLEAIMTAQEEIKKIVE 216 >gi|197106893|ref|YP_002132270.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium zucineum HLK1] gi|226702673|sp|B4RC48|PNP_PHEZH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|196480313|gb|ACG79841.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium zucineum HLK1] Length = 715 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 93/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +Q+R I V A GS L G+T L TL + + G Sbjct: 317 RIDGRTVDQVRPILGEVGVLPRAHGSALFTRGETQALCVTTLGTGDDEQLIDALEGKYFE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G ++ RALR ++ I I + Sbjct: 377 KFMLHYNFPPFSVGETGRMGSPGRREVGHG----KLAWRALRPMLPSYEEFPYTIRIVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A + G+ +AL D LK V+ I+ G++ G+ + Sbjct: 433 IFESNGSSSMATVCGSSLALMDAGV-------------PLKKPVSGIAMGLILEKDGFAV 479 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + A +++ L AK ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKKALEQAKGGRDHILAE 538 Query: 234 QKDVI 238 + Sbjct: 539 MNKAM 543 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 33/228 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + A+G+ L +G+T +L TA + + + + G +P Sbjct: 16 LTLETGRMARQADGAVLATYGETMVLATAVFAKSPKPGQDFFPLTVNYQEKFYAAGKIPG 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 S R G + R+I R +R + Q+I C V+ D Sbjct: 76 SFPRR------EGAPSQKETLTSRLIDRPIRPLFVKGFKNEVQVI--CTVLAHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G +AA G + G +++ E Sbjct: 128 IVAMVAASAALV-------------LSGVPFMGPIAAARVGYVNGEYVLNPTLDEMKESA 174 Query: 187 VDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +VE +E +++ + A + +I Sbjct: 175 MDLVVAGTAEAVMMVE----SEIKELTEEQVLGGVTFAHKGMQPVIDA 218 >gi|307634882|gb|ADI84427.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens KN400] Length = 740 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R IS+ + A GS L G+T L +TL + ++ +G Sbjct: 356 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRK 415 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R A R+ G + RAL VV I I D Sbjct: 416 RFLLHYNFPPFSVGETSFRLAPGRREIGHGM----LAERALERVVPKHEDFPYTIRIVSD 471 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 +++++G + A + G +A+ D +K VA I+ G++ G I Sbjct: 472 ILESNGSSSMATVCGGALAMMDAGV-------------PIKAPVAGIAMGLIKEGEGIAI 518 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G + +Q + +++ L A+D ++ Sbjct: 519 LSDILGDEDHLGDMDFKVAGTEAG-VTAIQMDIKITGVTREIMEKALLQARDGRLHILGK 577 Query: 234 QKDVIS 239 I+ Sbjct: 578 MNQAIA 583 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 79/230 (34%), Gaps = 27/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R I++ +K A G+ +V GDT +L TA + E + + G + Sbjct: 56 RTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQEKAYAGGKI 115 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R I R +R + S L QI+ D Sbjct: 116 P---GGFFKRE---GRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDNDPG 169 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G +A + G + G + + + D Sbjct: 170 ILAMIGASAAL-------------EVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSD 216 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ V ++ V+G A A S+ + + +I+ Q D Sbjct: 217 LEI-VVAASRDAVIMVEGGAAEA--SEKDVLEAIFFGHAAVQPIIEAQTD 263 >gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia oklahomensis EO147] gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia oklahomensis C6786] Length = 714 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ + Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 547 Query: 238 ISN 240 ++ Sbjct: 548 VAG 550 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ LV DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVLVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEVPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177 Query: 188 DANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ E Q E F + ++ I +L++ Sbjct: 178 DLVVAGTERAVLMVESEAQQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|224060110|ref|XP_002300042.1| predicted protein [Populus trichocarpa] gi|222847300|gb|EEE84847.1| predicted protein [Populus trichocarpa] Length = 961 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 86/243 (35%), Gaps = 11/243 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56 R+ GR+ +++R + GS L GDT +L T TL + Sbjct: 366 FRVDGRRLDEVRPLYCEAGYLPNLHGSSLFSRGDTQVLCTVTLGAPRDAQRLDSLVGPPT 425 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + I+ Sbjct: 426 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEDDFPYTVRINS 481 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ +DG T A + G VA+ D +++ + L V + + + D Sbjct: 482 EVMASDGSTSMATVCGGSVAMMDAGIPLQEHVAGVSVG--LVSEVDPSTGEIKDYRIVTD 539 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + VQ + A D L A ++ Sbjct: 540 ILGLEDHLGDMDFKIAGTRKG-VTAVQLDIKPAGIPLDIICECLEPALKGRLQILARMDQ 598 Query: 237 VIS 239 IS Sbjct: 599 EIS 601 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 77/221 (34%), Gaps = 34/221 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R I+ ++++A GS ++ +T +L+T T +T +Y + Sbjct: 65 RLITFETGKIARFANGSVVLGMEETKVLSTVT----SSKGDSVRDFLPLTVDYQEKQFAQ 120 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124 G ++RE G R R+I R +R + Q++ V+ +DG Sbjct: 121 GVIPSTYLRRE---GAPKERELLCGRLIDRPIRPLFPAGFYHEVQVMAS--VLSSDGRRD 175 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A AL G + I G +CG +V+ E S Sbjct: 176 PDVMAANATSAAL-------------MLSDIPWGGPIGVIRIGRICGQFVVNPTMDELSL 222 Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAK 224 D++ + T + ++VQ ++ A L LA Sbjct: 223 SDLNLVYACTKDKTLMIDVQAGG----IAEKDLEAGLRLAH 259 >gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex] Length = 227 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 13/210 (6%) Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 L + A+GS ++ G+T L+ +V + +G + E+ P S R Sbjct: 1 LKTGIISQAKGSAYIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKFAPFSCQKRRG 60 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 + Q + ++ AL + V L Q+ ++ VI+ DG AA+T A + Sbjct: 61 HQ-----QDNEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASL 115 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL M D + Q+ K + +L++ E+++ T Sbjct: 116 ALASASIPMYDLMIGTSVRQIPKLFLLD---PTKDEEWQPELNHDENNSNLTVGFMPSTH 172 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 +V + ML LA + Sbjct: 173 -----QVSAYVHEGVSKTEDLEQMLKLATE 197 >gi|319956216|ref|YP_004167479.1| polyribonucleotide nucleotidyltransferase [Nitratifractor salsuginis DSM 16511] gi|319418620|gb|ADV45730.1| polyribonucleotide nucleotidyltransferase [Nitratifractor salsuginis DSM 16511] Length = 729 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 30/247 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54 +R GR+ +++R IS+ + GSCL G+T L T TL E + R+ Sbjct: 345 VRPDGRKPDEVRPISIETNLLPSVHGSCLFTRGETQALATVTLGEGKEGQLYELLTERSP 404 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y P G A S R+ G + RAL V+D SR I + Sbjct: 405 RTERFMVHYNFPPFCVGEARPIGAPSRRELGHG----NLAKRALEPVIDREL--SRTIRL 458 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++++++G + A + +AL + VA ++ G++ Sbjct: 459 VSEILESNGSSSMATVCAGSLALVSA-------------EAEISALVAGVAMGLVKEGDR 505 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G I +Q + + L AK + Sbjct: 506 HRVLTDIMGLEDHDGDMDFKVAGTRKG-ITAMQLDIKLGGLDLEILSEALTQAKKARFHI 564 Query: 231 IKLQKDV 237 + L ++ Sbjct: 565 LDLMEEA 571 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 56/259 (21%) Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRST 70 S T V++ +GS L + G T +L T +K P ++ +P Sbjct: 16 SFTLGKVARQTDGSVLYRQGKTMILATVVSSDKAVHEPFLPLTVQYIEKAYAAAKIP--- 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G VKRE+ + R+I R+LR + I + V+ AD Sbjct: 73 GGFVKRES---KPSDFETLTSRIIDRSLRPLFPEDFAYPTVITV--LVLSAD-------- 119 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTIDVD 188 + ++ VAA+ G + G ++ L E+S + D Sbjct: 120 ---SEVDLQVAALHAANAALLVSDLPVERSVAAVRLGKIDGERRLNPPLSRMEESAL--D 174 Query: 189 ANFVMTDSGHIVEVQGSA----------------------------ERATFSQDHFFAML 220 V + ++ ++ +A E ++ A++ Sbjct: 175 LLLVGSGE-ELLMIEMAAKATEVIEVEEIPEPELLMGPMPVLLPHQESNELPEEELIALI 233 Query: 221 NLAKDRIADLIKLQKDVIS 239 A+ IA+ + ++ + Sbjct: 234 GEARGEIAEACRRYEEALR 252 >gi|325294385|ref|YP_004280899.1| polyribonucleotide nucleotidyltransferase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064833|gb|ADY72840.1| Polyribonucleotide nucleotidyltransferase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 712 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56 +R+ GR+ N++R I++ + GS L G T L T TL E+ + + + Sbjct: 311 IRIDGRKPNEIRPITIEVGLLPRVHGSALFTRGQTQALVTTTLGTPEEYQLVEGLMPEEQ 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G A G R + RAL V+ I + Sbjct: 371 KRFMLHYNFPPFCVGE----VAPLRGPGRREIGHGALAERALAPVIPEEDEFPYVIRVVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 D+++++G + A + G ++L D +K VA I+ G++ + Sbjct: 427 DILESNGSSSMATVCGGSLSLMDAGV-------------PIKAQVAGIAMGLILEGDKFV 473 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T G + +Q + S+D L A++ ++ Sbjct: 474 VLSDILGDEDHLGDMDFKVAGTRKG-VTAIQMDLKVKGISRDILMTALKQAREGRMYILD 532 Query: 233 LQKDVISNE 241 VIS+ Sbjct: 533 KMDAVISSP 541 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + K A+G+ +V GDT +L TA E + + ++ G + Sbjct: 13 RPLRFQTGKLAKQADGAVIVSQGDTMVLVTAVMSDEPREGIDFFPLLVEYRERAYAAGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G VKRE G+ R+I R++R + Q++ + Sbjct: 73 P---GGFVKRE---GKPTDEEVLKSRVIDRSIRPIFPKGFRNDVQVVAFVISADQENDPA 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA ALH + V A+ + G +V+ Y + D Sbjct: 127 VLAINGASAALH-------------ISRIPFEKPVGAVRVVRVNGKLVVNPSYEQQQNAD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ T+ +V V+G A+ ++ + LA + I I+ Q++ Sbjct: 174 INLVVSGTEDA-VVMVEGGAKEVP--EEEILDAIELAHEEIKKSIRAQQE 220 >gi|167044982|gb|ABZ09647.1| putative 3' exoribonuclease family, domain 1 [uncultured marine crenarchaeote HF4000_APKG8G2] Length = 272 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 25/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ R ++ R + + V +A GS + GDT +++ ++ P + G Sbjct: 24 RIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGIKIQPDKP-FPDMGDKGIFIC 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115 +LP + + A +G EI R++ R +R ++DLS L I + Sbjct: 83 TAEILPLAHPS-----AETGPPQPNVIEIARVVDRGIRESGMIDLSQLVLQKDKSVIGVF 137 Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQ----VLKGHVAAISC 166 D V DG A A A+ M+D Q + +++ Sbjct: 138 ADNVVTDHDGNLFDACSYAAVAAIITSKIPKWEMKDDKPVLIEDQASDTPITTIPISVTM 197 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-- 224 G++ + IVD + E +D G+IV +Q FS + L+ Sbjct: 198 GLMGEFIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSDG-FSLEQLVKCSELSIAI 256 Query: 225 -DRIADLIK 232 +I D+IK Sbjct: 257 GKKIRDIIK 265 >gi|138894789|ref|YP_001125242.1| polynucleotide phosphorylase/polyadenylase [Geobacillus thermodenitrificans NG80-2] gi|196247587|ref|ZP_03146289.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16] gi|187610268|sp|A4IME3|PNP_GEOTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134266302|gb|ABO66497.1| Polynucleotide phosphorylase PNPase [Geobacillus thermodenitrificans NG80-2] gi|196212371|gb|EDY07128.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16] Length = 722 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T +L T A + ++ + + Sbjct: 315 IRPDGRKVDEIRPLSSAVGILPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G G R + RAL VV I + Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNEDHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + ++D L A+ +++ Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTRDILEEALQQARKGRLEILD 536 Query: 233 LQKDVISNE 241 +S Sbjct: 537 HMMQTLSEP 545 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+TAT + V + + G +P Sbjct: 15 RPLVIETGELAKQANGAALVRYGDTVVLSTATASREAKDVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEV 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ VAL +G +A + G + G +++ + D+ Sbjct: 129 AALIGSSVAL-------------TISDIPFEGPIAGVIVGRIDGQFVINPTVEQMEKSDM 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ A+ ++ + + + LI Q+++ + Sbjct: 176 HLIVAGTKDA-INMVEAGADEVP--EEVMLEAIMFGHEEVKRLIAFQEEIAAQ 225 >gi|332030317|gb|EGI70060.1| Exosome complex exonuclease MTR3 [Acromyrmex echinatior] Length = 282 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 19/203 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R +N++R I L + A+GS ++ G+T ++ + ++P G + Sbjct: 37 RHDDRSDNELRNIFLKTGIVSQAKGSAYIEMGNTKVICSVFDPREIPNKTGFCMQGELFC 96 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ S R + Q +E ++ RAL V L + Q+ + V+ Sbjct: 97 EFKFASFSHRKRKLHQ-----QDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDN 151 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G AAI A +AL + M G V A + G+ G +VD E Sbjct: 152 GGSALAAAIMAASLALANAGVPMF-------------GLVTASTIGICKGTYLVDPTDIE 198 Query: 182 DSTIDVDANFVMTDSGHIVEVQG 204 ++ A T+ I+ VQ Sbjct: 199 ENFCSTKAASDTTNDHGII-VQA 220 >gi|328875321|gb|EGG23686.1| hypothetical protein DFA_05820 [Dictyostelium fasciculatum] Length = 307 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 89/253 (35%), Gaps = 23/253 (9%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 R E Q R+I + V A GS ++ +T ++ + P + + E Sbjct: 54 NRSEEQFRQIFMKTGVVSQASGSAYIEIENTKVICSVHGPRASPK-TELFESAKFSCELK 112 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 + E + + + +++ + +++ + L I + V+ DGG Sbjct: 113 FASFA----RPGERIDYMESAKEKDLSINLRQSIIGAIRLEKYPKTVIDVYVMVLNDDGG 168 Query: 125 TRTAAITGAWVALHDCLQHMEDCSN------------KFQLSQVLKGHVAAISCGMLCGY 172 AAIT A +AL D M D + + G+ ++ + + Sbjct: 169 VLVAAITAASMALADAGVEMYDMVSACSSICIRNQSISNGSNGSGSGNGSSGAAPKVQSS 228 Query: 173 PIVDLDYGEDSTIDVDANFV---MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 ++D E+ + D V M I ++ + E S ++ ++L D Sbjct: 229 ILLDPTLQEEESKDSLGCVVVAKMPSLNEITQIIQTGE---LSYNNTIDGIDLCIDGCDK 285 Query: 230 LIKLQKDVISNEV 242 + + K + + + Sbjct: 286 IYSIMKQNLISSL 298 >gi|302834702|ref|XP_002948913.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f. nagariensis] gi|300265658|gb|EFJ49848.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f. nagariensis] Length = 238 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 26/240 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R + + RV A+GS V+FG T ++ + + + T G + Sbjct: 13 RADGRGLEEFRTVFIKTRVLSQAKGSAYVEFGTTKVMVGVFGPRQSEVKLGFTDTGRLNC 72 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQ-EIQRM--IGRALRSVVDLSALGSRQIIIDCDV 118 E + ++ K G++Q E + +AL V L + + Sbjct: 73 EVRLTSFASHKLAK--------SGQTQLESSAAQGLQQALEPSVQLDKFPKAVFDVSAMI 124 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ++A G IT A VAL D + D V A+ G ++D Sbjct: 125 LEAGGSDLAVLITAASVALADAGVELYDL-------------VPAVQVSKQRGLLLLDPS 171 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E + + + EV R ++ L LA L ++ + Sbjct: 172 LEESGAEEGGMLVGLMP--ELNEVTALNVRGLWADSEMQEGLELALGGCGQLKAAMREAL 229 >gi|330952126|gb|EGH52386.1| ribonuclease PH [Pseudomonas syringae Cit 7] Length = 92 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 35/68 (51%), Positives = 50/68 (73%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T ++E VP +++ GW+TA Sbjct: 25 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 84 Query: 62 EYGMLPRS 69 EYGMLPR+ Sbjct: 85 EYGMLPRA 92 >gi|39977801|ref|XP_370288.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15] gi|145013689|gb|EDJ98330.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15] Length = 280 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 88/258 (34%), Gaps = 29/258 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIR------- 52 +R+ GR+ N++R R A+GS ++ G T ++ T E P R Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72 Query: 53 ---------NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103 +K + + S+ +R KR GR R QE+Q + AL + + Sbjct: 73 TATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKR----GRGDKRIQELQATVSHALSATLH 128 Query: 104 LSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA 163 I V+ DG A I A +A D M D A Sbjct: 129 THLFQHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAAD 188 Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S P++DL+ E++ + + + +V + + ML +A Sbjct: 189 ESA-----DPLLDLNQQEETELPGLTAATLGATDRVVVLSCESRVQA---SRLEGMLAVA 240 Query: 224 KDRIADLIKLQKDVISNE 241 D + ++ V+ Sbjct: 241 VDGCKQVREILDRVVKER 258 >gi|330817796|ref|YP_004361501.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli BSR3] gi|327370189|gb|AEA61545.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli BSR3] Length = 712 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRSGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALVACLPSAEEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G + +Q + +++ L AK+ ++ K Sbjct: 489 LGDEDHLGDMDFKVAGTEAG-VTALQMDIKIQGITKEIMQVALEQAKEGRLHILGKMKGA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I I + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSINPEVPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDSQYVLNPTREQIKASSL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E +D + +A D I +L++ Sbjct: 178 DLVVAGTERAVLMV---ESEAQQLPEDVMLGAVVFGHEQMQVAIDAIHELVR 226 >gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium KB13] gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium KB13] Length = 710 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I ++ V GS L G+T L ATL I + G T Sbjct: 320 RIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALAVATLGTPRDAQIIDALQGEYTD 379 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + + R+ G R+ RAL +V+ I + + Sbjct: 380 RFMLHYNFPPFSTGETGRVGSPKRREIGHG----RLAKRALLAVLPEQEDFDYTIRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 +++++G + A++ G +A+ D LK HVA I+ G++ Sbjct: 436 IMESNGSSSMASVCGGCMAMLDAGV-------------PLKSHVAGIAMGLIKEDNRVAI 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D +++G I +Q + + + L AK+ ++ L Sbjct: 483 LTDILGDEDHLGDMDFKVAGSENG-ITALQMDIKIDGITTEIMQVALKQAKEGREHILDL 541 Query: 234 QKDVISN 240 K + + Sbjct: 542 MKKALKS 548 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 27/226 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 E+ L V++ A+G+ +V +G+T +L T ++E + + T G +P Sbjct: 19 ELKLETGEVARQADGAVMVSYGETVVLVTVVGNQNVKEGQDFFPLTVDYQEKTYAAGKIP 78 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R LR + QI+ ++ Sbjct: 79 ---GGFFKRE---GRPSENEILVCRLIDRPLRPLFPKGFYNDVQIVATVLSSDSEIDADI 132 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA AL G + A G + G +++ + ++ Sbjct: 133 PAIIGASAALSISGI-------------PFYGPIGATKVGYVDGEYVINPTKTQLQESEL 179 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D T ++ +E S+ + D+IKL Sbjct: 180 DLVVAGTKDAVLMV---ESEAKELSEKVMLDAVLAGHKAAKDVIKL 222 >gi|320355005|ref|YP_004196344.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus propionicus DSM 2032] gi|320123507|gb|ADW19053.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus propionicus DSM 2032] Length = 695 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 88/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPM--WIRNTKH 56 MRL GR +R IS + A GS L G+T ++ T E + + Sbjct: 311 MRLDGRSFEDVRPISCEVGILPRAHGSALFTRGETQALVICTLGSERDEQHLEGLGGDVY 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G S R G + R + +V+ + + + Sbjct: 371 RRFMLHYNFPPFCVGEVRPLRGPSRRDIGHGT----LARRGIEAVLPANDSFPYTLRVVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + G +AL D +K V+ ++ G++ Sbjct: 427 EVLESNGSSSMATVCGGSLALMDAGV-------------PVKAPVSGVAMGLIKEGDQVV 473 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D V T G I +Q + + L AK +++ Sbjct: 474 VLTDILGDEDHLGDMDFKVVGTRQG-ITGLQMDIKIEGVDRGIMNQALAQAKKGRIHILE 532 Query: 233 LQKDVISNE 241 + +S+ Sbjct: 533 KMEGALSSP 541 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 81/228 (35%), Gaps = 27/228 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 R I+ K A GS +V GDT +L T E + ++ +T EY Sbjct: 12 RTIAFETGKMAKQANGSVVVSSGDTKVLVTVVAESE----SKDMGFLPLTIEYQERMYAA 67 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 R G+ +RE GR + R+I R LR + Q+I + Sbjct: 68 GRIPGSYFRREI--GRPSEKEVLTCRLIDRPLRPLFPDGYSCETQLIATVFSADQEFDPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +AL G VAA G + G +++ + Sbjct: 126 ILAMNGASMAL-------------MLSDIPFAGPVAAARVGYVDGQYVLNPSKKQLEKSQ 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ++ T S +V V+G A ++D + A I LI LQ Sbjct: 173 INLVVAGTRSA-VVMVEGKASE--MAEDTVLEAIFFAHAGIQPLIDLQ 217 >gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae RM11-1a] Length = 246 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 23/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HG 57 +RL GR+ N++R + +A +GS ++ G+ ++T K P Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGP-KEPRLKSQMDTSKA 70 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + S R K S + R EIQ + R V L+ I I+ Sbjct: 71 LLNVSVNITKFSKFERSK---SSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++ DGG + I G +AL D M D +++ IS G+ P++D Sbjct: 128 VLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPLLDT 174 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + E++ + V+ S + + D +L + + L + Sbjct: 175 NSLEENAMSTVTLGVVGKSEKLSLL---LVEDKIPLDRLENVLAIGIAGAHRVRDLMDEE 231 Query: 238 ISNE 241 + Sbjct: 232 LRKH 235 >gi|308513305|ref|NP_952644.3| polynucleotide phosphorylase/polyadenylase [Geobacter sulfurreducens PCA] gi|81702393|sp|Q74CS9|PNP_GEOSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|39983574|gb|AAR34967.1| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens PCA] Length = 697 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R IS+ + A GS L G+T L +TL + ++ +G Sbjct: 313 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRK 372 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R A R+ G + RAL VV I I D Sbjct: 373 RFLLHYNFPPFSVGETSFRLAPGRREIGHGM----LAERALERVVPKHEDFPYTIRIVSD 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 +++++G + A + G +A+ D +K VA I+ G++ G I Sbjct: 429 ILESNGSSSMATVCGGALAMMDAGV-------------PIKAPVAGIAMGLIKEGEGIAI 475 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G + +Q + +++ L A+D ++ Sbjct: 476 LSDILGDEDHLGDMDFKVAGTEAG-VTAIQMDIKITGVTREIMEKALLQARDGRLHILGK 534 Query: 234 QKDVIS 239 I+ Sbjct: 535 MNQAIA 540 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 79/230 (34%), Gaps = 27/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R I++ +K A G+ +V GDT +L TA + E + + G + Sbjct: 13 RTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQEKAYAGGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R I R +R + S L QI+ D Sbjct: 73 P---GGFFKRE---GRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDNDPG 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G +A + G + G + + + D Sbjct: 127 ILAMIGASAAL-------------EVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ V ++ V+G A A S+ + + +I+ Q D Sbjct: 174 LEI-VVAASRDAVIMVEGGAAEA--SEKDVLEAIFFGHAAVQPIIEAQTD 220 >gi|6321634|ref|NP_011711.1| Ski6p [Saccharomyces cerevisiae S288c] gi|1176073|sp|P46948|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName: Full=Extracellular mutant protein 20; AltName: Full=Ribosomal RNA-processing protein 41; AltName: Full=Superkiller protein 6 gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae] gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae] gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae] gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789] gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291] gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118] gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c] gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB] gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796] gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13] gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23] gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3] Length = 246 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 23/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HG 57 +RL GR+ N++R + +A +GS ++ G+ ++T K P Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGP-KEPRLKSQMDTSKA 70 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + S R K S + R EIQ + R V L+ I I+ Sbjct: 71 LLNVSVNITKFSKFERSK---SSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++ DGG + I G +AL D M D +++ IS G+ P++D Sbjct: 128 VLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPLLDT 174 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + E++ + V+ S + + D +L + + L + Sbjct: 175 NSLEENAMSTVTLGVVGKSEKLSLL---LVEDKIPLDRLENVLAIGIAGAHRVRDLMDEE 231 Query: 238 ISNE 241 + Sbjct: 232 LRKH 235 >gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii] gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii] Length = 250 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 21/240 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR R L + A GS + GDT ++ + + + G + Sbjct: 27 RIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLNC 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +T R K G +++ M+ +++ VDL + + V+Q+ Sbjct: 87 NVKYCSFATPVRGK----MGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVLQS 142 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 GG +T A +AL D + D VAA+S + G ++D E Sbjct: 143 GGGDLPVIVTCASLALADAGIVLYDL-------------VAAVSVSSIQGQVLLDPSTSE 189 Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ D M I +V + E +S L+L D A + + + + Sbjct: 190 ENCEDGSLMVAYMPSRKEITQVTMTGE---WSSSRASESLDLCLDACAKIGDVMRSCLKE 246 >gi|146329836|ref|YP_001209934.1| polynucleotide phosphorylase/polyadenylase [Dichelobacter nodosus VCS1703A] gi|187610297|sp|A5EXU0|PNP_DICNV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146233306|gb|ABQ14284.1| polyribonucleotide nucleotidyltransferase [Dichelobacter nodosus VCS1703A] Length = 693 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 99/246 (40%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I++ V A GS L G+T L ATL + +T G + Sbjct: 315 RIDGRDTKTVRPITIHTSVLPRAHGSALFTRGETQALVVATLGTGRDAQLLDTLDGEVRD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y LP S G + + R+ G R+ R L +V+ L I + + Sbjct: 375 NFMLHYNFLPFSVGEIGRIGSPKRREIGHG----RLARRGLSAVLPLEEDFPYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G+ +AL D ++ VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGSSLALMDAGV-------------PVQTPVAGIAMGLIKEGDEFAI 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G + +Q + +++ L+ A + ++++ Sbjct: 478 LTDILGDEDHLGDMDFKVAGSATG-VTALQMDIKINGITEEIMRQALSQAHEGRLHILEV 536 Query: 234 QKDVIS 239 I+ Sbjct: 537 MNQAIA 542 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 27/213 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 +++L +++ A+G+ +V DT +L T T+ E + + G +P Sbjct: 13 QVTLETGEIARQADGAVIVNMDDTIVLVTVVANKTVAEGQDFFPLTVDYQEKNYAAGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR I R+I R +R + L QII + Sbjct: 73 ---GGFFKRE---GRPSEEETLISRLIDRPIRPLFADGFLNEVQIIATVLSYNPEVSPDI 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I GA AL G +AA G + +++ + Sbjct: 127 PSIIGASAAL-------------KLSGLPFNGPIAAARVGYVNDAYVLNPSPKALKNSRL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 D T+S ++ +E S+ + Sbjct: 174 DLVVAGTESAVLMV---ESEADQLSEAVMLEAV 203 >gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease Length = 246 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 23/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HG 57 +RL GR+ N++R + +A +GS ++ G+ ++T K P Sbjct: 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGP-KEPRLKSQMDTSKA 70 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + S R K S + R EIQ + R V L+ I I+ Sbjct: 71 LLNVSVNINKFSKFERSK---SSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++ DGG + I G +AL D M D +++ IS G+ P++D Sbjct: 128 VLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPLLDT 174 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + E++ + V+ S + + D +L + + L + Sbjct: 175 NSLEENAMSTVTLGVVGKSEKLSLL---LVEDKIPLDRLENVLAIGIAGAHRVRDLMDEE 231 Query: 238 ISNE 241 + Sbjct: 232 LRKH 235 >gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD1] gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD1] Length = 713 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSAEEFGYSIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ + Sbjct: 487 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 545 Query: 238 ISN 240 ++ Sbjct: 546 VAG 548 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 77/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 15 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 75 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + + Sbjct: 129 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRL 175 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 176 DLVVAGTERA-VLMVESEADQLPEEVMLGAVVFGHEQMQTAID----AIHELVR 224 >gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia multivorans ATCC 17616] gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia multivorans ATCC 17616] gi|226702628|sp|A9AJP0|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans ATCC 17616] gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans ATCC 17616] Length = 715 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSAEEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ + Sbjct: 489 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 547 Query: 238 ISN 240 ++ Sbjct: 548 VAG 550 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 77/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEEVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha JMP134] gi|123625489|sp|Q473U7|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha JMP134] Length = 728 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L AK+ ++ + Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGAMQGA 542 Query: 238 IS 239 + Sbjct: 543 MG 544 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 31/232 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + + +++ A G+ +V DT +L T + + + + T G +P Sbjct: 18 VRMETGEIARQAGGAVIVDVEDTVVLATVVAAKSPKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R LR + Q+++ + + Sbjct: 77 --GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSLNPEIPADIP 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G V A G G +++ + +T D+D Sbjct: 132 ALIGASAALAVSGI-------------PFNGPVGAARIGYKDGQYLLNPTRSQMATSDLD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236 T+ ++ +E S+D + + I + L ++ Sbjct: 179 LVVAGTERAVLMV---ESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVRE 227 >gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2M] gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2] gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2] gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans CGD2M] Length = 715 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSAEEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ + Sbjct: 489 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 547 Query: 238 ISN 240 ++ Sbjct: 548 VAG 550 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRL 177 Query: 188 DANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ E +E F + ++ I +L++ Sbjct: 178 DLVVAGTERAVLMVESEADQLSEEVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide adenylyltransferase [Burkholderia rhizoxinica HKI 454] gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) / Polynucleotide adenylyltransferase (EC 2.7.7.19) [Burkholderia rhizoxinica HKI 454] Length = 768 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 93/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL K I + G Sbjct: 366 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVATLGTKGDEQIIDAIEGEYRE 425 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ R+L + I + + Sbjct: 426 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRSLVPCLPGDDEFGYTIRVVSE 481 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 482 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 532 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L A++ ++ Sbjct: 533 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILDKMTSA 591 Query: 238 ISN 240 + + Sbjct: 592 VPS 594 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 + L +++ A G+ +V DT +L T + + + + T G +P Sbjct: 61 NVRLETGEIARQASGAVIVDVEDTVVLATVVAAKSAKPGQDFFPLTVDYIEKTYAAGKIP 120 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR I R+I R LR + Q++I I D Sbjct: 121 ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSINPDIPADI 174 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G + A + +++ + + Sbjct: 175 PAMIGASAALAISGI-------------PFNGPIGAARVAYIDNQFVLNPTRSQSKASKL 221 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E ++ + +A D I DL+K Sbjct: 222 DLVVAGTERAVLMV---ESEADQLPEEVMLGAVVFGHEQMQVAIDAIHDLVK 270 >gi|297530556|ref|YP_003671831.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3] gi|297253808|gb|ADI27254.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3] Length = 723 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S V GS L G T +L T A + ++ + + Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G G R + RAL VV I + Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L A+ +++ Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALMQARKGRLEILD 536 Query: 233 LQKDVISNE 241 +S Sbjct: 537 HMMQTLSEP 545 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+TAT + V + + G +P Sbjct: 15 RPLIVETGELAKQANGAVLVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ + R+I R +R + Q++ + D Sbjct: 75 ---GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ VAL +G +A + G + G +++ + D+ Sbjct: 129 AALIGSSVAL-------------TISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ A+ ++ + + + LI Q+++ + Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEIAAQ 225 >gi|261419469|ref|YP_003253151.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. Y412MC61] gi|319766284|ref|YP_004131785.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y412MC52] gi|261375926|gb|ACX78669.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y412MC61] gi|317111150|gb|ADU93642.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y412MC52] Length = 723 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S V GS L G T +L T A + ++ + + Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G G R + RAL VV I + Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L A+ +++ Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALMQARKGRLEILD 536 Query: 233 LQKDVISNE 241 +S Sbjct: 537 HMMQTLSEP 545 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+TAT + V + + G +P Sbjct: 15 RPLIVETGELAKQANGAALVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ + R+I R +R + Q++ + D Sbjct: 75 ---GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ VAL +G +A + G + G +++ + D+ Sbjct: 129 AALIGSSVAL-------------TISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ A+ ++ + + + LI Q+++ + Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEIAAQ 225 >gi|56419804|ref|YP_147122.1| polynucleotide phosphorylase/polyadenylase [Geobacillus kaustophilus HTA426] gi|81347597|sp|Q5L0I2|PNP_GEOKA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56379646|dbj|BAD75554.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Geobacillus kaustophilus HTA426] Length = 723 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S V GS L G T +L T A + ++ + + Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G G R + RAL VV I + Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L A+ +++ Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALMQARKGRLEILD 536 Query: 233 LQKDVISNE 241 +S Sbjct: 537 HMMQTLSEP 545 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+TAT + V + + G +P Sbjct: 15 RPLIIETGELAKQANGAALVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ + R+I R +R + Q++ + D Sbjct: 75 ---GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ VAL +G +A + G + G +++ + D+ Sbjct: 129 AALIGSSVAL-------------TISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ A+ ++ + + + LI Q+++ + Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEIAAQ 225 >gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus metallidurans CH34] gi|187611276|sp|Q1LPW7|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus metallidurans CH34] Length = 725 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 98/242 (40%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L A++ ++ + Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAREGRMHILGAMQGA 542 Query: 238 IS 239 + Sbjct: 543 MG 544 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 31/232 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + + +++ A G+ +V DT +L T + + + + T G +P Sbjct: 18 VRMETGEIARQASGAVIVDVEDTVVLATVVAAKSPKAGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R LR + Q++I V+ Sbjct: 77 --GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVI--HVL--------- 120 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 +I A D + + G V A G G +++ + + D+D Sbjct: 121 SINPEIPA--DIPALIASSAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRAQIAASDLD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236 T+ ++ +E S+D + + I + L ++ Sbjct: 179 LVVAGTERAVLMV---ESEAHQLSEDVMLGAVVYGHEQMQIAINAIHDLVRE 227 >gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis JLW8] gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8] Length = 709 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V GS L G+T L ATL I + G Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYAD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL + + + + + Sbjct: 376 RFMLHYNMPPYATGETGRVGTPKRREIGHG----RLAKRALVAALPAKEDFDYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M++ + + +G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLALMDAGVPMKNHVAGIAMGLIKEGNRVAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + + L AK+ A ++ + K Sbjct: 483 LGDEDHLGDMDFKVAGTEDG-ITALQMDIKITGITAQIMQVALAQAKEGRAHILGIMKQA 541 Query: 238 ISN 240 +S Sbjct: 542 VSG 544 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 35/229 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 ++L +S+ A+ + +V +GDT +L T + +V + + T G +P Sbjct: 16 LTLETGEISRQADAAVMVSYGDTVVLVAVTSKREVKAGQDFFPLTVDYMEKTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV----IQADGG 124 G KRE GR + R+I R LR + + Q++ I AD Sbjct: 75 --GGFFKRE---GRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSSDPEIDAD-- 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI GA A+ G + A G + +++ + Sbjct: 128 --IPAIIGASAAMSLSGI-------------PYYGPLGAARVGYINDEYVLNPTKAQLEE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++D T+S ++ V+ +E S++ + +++ +IK+ Sbjct: 173 TELDLVVAATESA-VMMVE--SEAKELSEEVMLGAVVYGHEQMQAVIKM 218 >gi|257463538|ref|ZP_05627931.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D12] Length = 743 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TATL K + + + Sbjct: 360 RVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKEDEQLVDNLEKEYYK 419 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + RALR V+ I + D Sbjct: 420 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 475 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL +K HVA I+ G++ Sbjct: 476 ITESNGSSSQASICGGSLALMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 522 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ L+ A ++++ Sbjct: 523 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALSQAHVARQQILEV 581 Query: 234 QKDVISNE 241 IS+ Sbjct: 582 MNAAISSP 589 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 29/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +++ + G+ ++++GDT LL+T + V + + G Sbjct: 50 RSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLTVDYIEKFYAAGKF 109 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE+ R + I R+I R +R + I+ Sbjct: 110 P---GGFNKRES---RPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEKNTPD 163 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I + +AL G VA + G + G +++ + Sbjct: 164 YLGIIASSLALS-------------ISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSL 210 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +D + T ++VE A ++ + A + I + Q++ + Sbjct: 211 LDLSVAGTKEAVNMVE----AGAKELDEETMLKAILFAHENIKKICAFQEEFVK 260 >gi|186476768|ref|YP_001858238.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phymatum STM815] gi|226702629|sp|B2JDN2|PNP_BURP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|184193227|gb|ACC71192.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phymatum STM815] Length = 712 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L AT +E++ + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSAEEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 38/233 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 + + +++ A G+ LV DT +L T + + + T G +P Sbjct: 18 VRMETGEIARQASGAVLVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYIEKTYSAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R LR + Q++I I + Sbjct: 77 --GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVMSINPEVPADIP 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G V A + +++ + +D Sbjct: 132 ALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRSQIKGSRLD 178 Query: 189 ANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 T+ ++ V+ A++ F + ++ I +L++ Sbjct: 179 LVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|187479141|ref|YP_787166.1| polynucleotide phosphorylase/polyadenylase [Bordetella avium 197N] gi|123765982|sp|Q2KWI6|PNP_BORA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115423728|emb|CAJ50278.1| polyribonucleotide nucleotidyltransferase [Bordetella avium 197N] Length = 718 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ R+L V+ I I + Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHG----RLAKRSLVPVLPKPEDFQYTIRIVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D + D + +L+ A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPITDHVAGVAMGLILENGKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ L A++ ++ ++ Sbjct: 487 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRES 545 Query: 238 I 238 + Sbjct: 546 L 546 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 36/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + L +++ A G+ LV DT +L T + + + T G +P Sbjct: 16 VVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQDFFPLTVDYIEKTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+ + R+I R LR + Q++I + + Sbjct: 75 --GGFFKRE---GKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVIHTLSVNPEIDPDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A + G +++ + + +D Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVAYVEGQYLLNPTASQLKSSKMD 176 Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232 T++ ++ E Q +E F + A +N I DL++ Sbjct: 177 LVVAGTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAIN----AIHDLVR 224 >gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1] Length = 238 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 13/187 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKH 56 +R+ GR+ N++R + R A+GS ++ G T ++ T + Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDM 72 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 I + S+ +R KR GR R QEI+ I AL S + + I I Sbjct: 73 AAINVNVVVAGFSSVDRKKR----GRNDKRIQEIETTIANALSSNLHTHLFPNSSISISL 128 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 V+ DG A I +AL D M D G + + G P++D Sbjct: 129 HVLSQDGSLLAALINATTLALIDAGIPMSDYIAACTA-----GSTSTYAAGDDNADPLLD 183 Query: 177 LDYGEDS 183 L+ E+ Sbjct: 184 LNNQEEQ 190 >gi|146104020|ref|XP_001469709.1| exosome complex exonuclease RRP41 [Leishmania infantum] gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum JPCM5] Length = 246 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59 +RL GR+ + R + + +GSC + G + + + + G + Sbjct: 13 LRLDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T E + + NR R+ S++I + + RSV+ LS + QI I +V+ Sbjct: 73 TCEVAVAAFAGENRR----NPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 Q DG + A + A +AL D M D V I G+L + ++DL Sbjct: 129 QKDGNEKIACVNAACLALIDANVAMRDA-------------VCCIDAGILDEHMLIDLTN 175 Query: 180 GE--DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKD 236 E + A F D+ +I+ ++ ++ D +L A++ L + + Sbjct: 176 DELRSQCPVIAAAFTGHDTRNIIWLETASR---LPPDSAARLLKCAEEGATKLFETAMRK 232 Query: 237 VISNE 241 + Sbjct: 233 ALEEH 237 >gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter oceani DSM 16646] gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter oceani DSM 16646] Length = 702 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 94/250 (37%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ ++R IS + GS L G T +LT AT + ++ + + Sbjct: 310 IRPDGRKSTEIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILDGLELEES 369 Query: 57 GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG R+ R G R + RAL ++ I + Sbjct: 370 KRFMHHYNFPPYSTGETRMLRG-----PGRREIGHGALAERALEPMIPPEETFPYTIRLV 424 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T A++ G+ +AL D +K VA I+ G++ Sbjct: 425 SEVLSSNGSTSMASVCGSTLALMDAGV-------------PIKAPVAGIAMGLIKQDDKV 471 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + + L A++ ++ Sbjct: 472 TILSDIQGIEDFLGDMDFKVAGTSKG-ITAIQMDIKIKGIDAEILKKALEQAREGRLYIL 530 Query: 232 KLQKDVISNE 241 + IS+ Sbjct: 531 EKMLATISSP 540 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 27/234 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + A G+ L ++GDT +L TAT E V + G + Sbjct: 11 RPFIIETGKLAQQANGAVLARYGDTVVLVTATASKEPREGVDFLPLTVDYEERLYAVGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R LR + QII + Sbjct: 71 P---GGFIKRE---GKPSEKAILSARVIDRPLRPLFPKGFRNDIQIIATILSVDQGNTPD 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA +AL +G V A+S G++ G I++ + Sbjct: 125 VVAINGASIALC-------------ISDIPFEGPVGAVSVGLVDGNFIINPTVEQYEKSR 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T I+ V+ A+ +++ + + I ++K Q+++I+ Sbjct: 172 LRLVVAGTKDA-ILMVEAGADE--VTEEEMINAILFGHEEIKKIVKFQEEIIAK 222 >gi|195952523|ref|YP_002120813.1| polynucleotide phosphorylase/polyadenylase [Hydrogenobaculum sp. Y04AAS1] gi|226702655|sp|B4U6R7|PNP_HYDS0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|195932135|gb|ACG56835.1| Polyribonucleotide nucleotidyltransferase [Hydrogenobaculum sp. Y04AAS1] Length = 703 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 89/249 (35%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTKH 56 R+ GR+E +R I++ + GS + G T L T TL K + Sbjct: 310 RIDGRKETDIRPITIEMHPLERPHGSAVFTRGQTQALATVTLAPKDEAQLVETIFEGETF 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG R+ G + RAL ++ I + Sbjct: 370 KRFMLHYNFPPFSTGEARPWGPPRRREIGHG----ALAERALEPLLAKEEDFPYIIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 D+++++G + A + +AL D M K HVA I+ G++ Sbjct: 426 DILESNGSSSMATVCAGSLALFDAGVPM-------------KKHVAGIAMGLIKDGDNFV 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + VQ + S+D LN AK+ ++ Sbjct: 473 ILTDILGDEDHLGDMDFKVAGTRDG-VTSVQMDIKIKGLSKDIMIKALNQAKEARMFILD 531 Query: 233 LQKDVISNE 241 + I Sbjct: 532 KLYEAIPEP 540 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS-- 69 I + + A+ S L+ G T +L T + E+ + ++ +Y + Sbjct: 12 PIYIEANKYAHQADSSILISQGGTKVLVTVCVSEEP---LCGIDFAPLSVDYRERSFAWG 68 Query: 70 --TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G +KRE G+ R I R+I R LR ++ L +++ C + AD Sbjct: 69 KIPGGFIKRE---GKPTDREVLISRVIDRPLRPLMPKGFLNE--VVVTCLTLSADDKYDP 123 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AITGA AL S +G +A + + G I++ Y + Sbjct: 124 DVLAITGASAALV-------------SSSVPFEGPIAGMRVCRVNGEFIINPTYEQRKNS 170 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+D ++ IV V+G A+ S L ++ LIK Q++++ Sbjct: 171 DMDIVMALSKDA-IVMVEGGAKEVEESV--LLDALFFGLEKGQTLIKAQEELV 220 >gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus HB8] gi|81364132|sp|Q5SJ75|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8] Length = 713 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R GR +R I + V A GS + G+T +L T TL I + + Sbjct: 327 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDDLGIDETE 386 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + VS R+ G + RAL++V+ I + D Sbjct: 387 KFLVHYNFPPFSTGEVRRLRGVSRREVGHG----NLAKRALKAVMPKEEDFPYTIRVVGD 442 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V++++G + A + +AL D ++ VA ++ G++ Sbjct: 443 VLESNGSSSMATVCAGCLALMDAGV-------------PIRAPVAGVAMGLVWEENRAVI 489 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED+ D+D T G + +Q + ++ L A++ ++ L Sbjct: 490 LTDILGLEDALGDMDFKVAGTRKG-VTALQMDNKVGGLPREVLKEALLQAREARLKILDL 548 Query: 234 QKDVI 238 + V+ Sbjct: 549 MEAVL 553 Score = 92.8 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 29/236 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + L +K A GS LV++ DT +L TA E +T E+ + Sbjct: 20 RPLVLETGKYAKQASGSVLVRYADTVVLATAQASET----PVEADFLPLTVEFEERHYAV 75 Query: 71 ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G+ ++RE GR G ++ RM R +R + QII+ V+ AD Sbjct: 76 GKIPGSFMRRE---GRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVT--VLSAD---- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D L + + +G +AA+ G++ G +++ E Sbjct: 127 -------QKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQ 179 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D V I+ V+ AE ++ L A + +++LQ + ++ E+ Sbjct: 180 LDL-VVAGSKEAILMVE--AEAGEVDEETLVQALEFAHKEMQPILELQ-EAMAREL 231 >gi|145220228|ref|YP_001130937.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris vibrioformis DSM 265] gi|189037312|sp|A4SG26|PNP_PROVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145206392|gb|ABP37435.1| Polyribonucleotide nucleotidyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 732 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 90/241 (37%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR +Q+R IS+ V A GS L G+T L TL K + N+ Sbjct: 332 RLDGRTLDQVRPISIDLGVIPRAHGSALFTRGETQALVAVTLGTKKDAQSVDTLTNSADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R +GR R + RA+R V I I + Sbjct: 392 RFMLHYNFPPFSVGE-VGRLGTTGR---REIGHGNLAERAIRMVAPTEQEFPYTIRIVSE 447 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +AL D ++ + + + +G A+ + D+ Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPLKKAVSGIAMGLIKEGSEYAV---------LSDI 498 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + L A+ ++ ++ Sbjct: 499 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILETALEQARRGRFHILDKMEEA 557 Query: 238 I 238 I Sbjct: 558 I 558 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 28/230 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGMLP 67 IS+ K A+G+ +V+ GDT ++ T +K P + ++ G P Sbjct: 15 ISIETGRMAKQADGATVVRMGDTMVIATVVSSKKTPSPNQDFFPLQVEYREKYYAAGKFP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA R + R+I RALR + Q+II+ VI +D Sbjct: 75 ---GGFFKREA---RPSEKEILSARLIDRALRPLFPTGYYYETQVIIN--VISSDQQN-D 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A + G A + + ++ + G + G I++ E D+ Sbjct: 126 ADVLGGLAA----------SAAIMVSDIPFENAMSEVRVGRVNGQFIINPTIDELEGSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D + T +G I ++G E S+ + + I L LQ V Sbjct: 176 DISIGGT-AGTICMLEG--EMKEISEAEMLEAIRFGHEAIKKLCALQDSV 222 >gi|317061093|ref|ZP_07925578.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12] gi|313686769|gb|EFS23604.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12] Length = 707 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TATL K + + + Sbjct: 324 RVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKEDEQLVDNLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + RALR V+ I + D Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLALMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ L+ A ++++ Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALSQAHVARQQILEV 545 Query: 234 QKDVISNE 241 IS+ Sbjct: 546 MNAAISSP 553 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 29/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +++ + G+ ++++GDT LL+T + V + + G Sbjct: 14 RSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLTVDYIEKFYAAGKF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE+ R + I R+I R +R + I+ Sbjct: 74 P---GGFNKRES---RPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEKNTPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I + +AL G VA + G + G +++ + Sbjct: 128 YLGIIASSLALS-------------ISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSL 174 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +D + T ++VE A ++ + A + I + Q++ + Sbjct: 175 LDLSVAGTKEAVNMVE----AGAKELDEETMLKAILFAHENIKKICAFQEEFVK 224 >gi|304316856|ref|YP_003852001.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778358|gb|ADL68917.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 700 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKH 56 +R+ GR + +R I+ V GS + G T ++T ATL + I + + Sbjct: 311 IRVDGRGLDDIRPITCDIGVLPRTHGSAVFTRGQTQVMTVATLGPLGDIQILDGLGDEES 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL ++ I + Sbjct: 371 KRYMHHYNFPPFSVGETRPLRGPGRREIGHG----ALAERALEPMIPSEEEFPYTIRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172 +V+ ++G T A++ G+ +AL D +K VA ++ G++ G Sbjct: 427 EVLSSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGVAMGLIKEGETVS 473 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I +Q + A +D A L A+ ++ Sbjct: 474 ILTDIQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIAGIDRDILSAALEKARKGRLFILN 532 Query: 233 LQKDVISNE 241 + I Sbjct: 533 KMLETIKEP 541 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 26/213 (12%) Query: 24 AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 A GS LV++GDT +L TA E V + + + G +P G +KRE Sbjct: 25 ANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERLYSVGKIP---GGFIKRE-- 79 Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139 G+ ++ R+I R +R + Q+I + D A+ G+ VAL Sbjct: 80 -GKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPEIVAMIGSSVALS- 137 Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199 G ++S ++ G I++ D D+ T I Sbjct: 138 ------------ISDIPFNGPTGSVSVALVDGKFIINPDLATREKSDLHLTVSGTKDA-I 184 Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + V+ A ++ + A + I ++ Sbjct: 185 MMVEAGANEVP--EEVMLDAIMYAHEYIKKIVD 215 >gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972] Length = 252 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 18/182 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +RL GR+ N+ R ++L +G C V G +H+ T +V + I Sbjct: 13 LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTI 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T + + + G R + R S++I + RSVV LS + QI I +V+ Sbjct: 73 TCDVVVAAFA-GERRR---EQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + DG + A I A +AL D M D V + G++ G+ +VDL Sbjct: 129 KQDGSDKAACINAACLALIDASIAMRDV-------------VYTQTVGLIEGFDVVDLTT 175 Query: 180 GE 181 E Sbjct: 176 EE 177 >gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] Length = 735 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V A GS L G+T L TL K + + Sbjct: 333 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGLTGEQRE 392 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 393 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALTAVLPNEEDFQYTMRVVSE 448 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G ++L D LK VA ++ G++ Sbjct: 449 ICESNGSSSMASVCGGCLSLLDAGV-------------PLKDFVAGVAMGLIKEGNKFAV 495 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD G + +Q + S++ L AK+ ++ Sbjct: 496 LTDILGDEDHLGDMDFKVAGTDHG-VTALQMDIKIEGISKEIMQVALAQAKEGRMHILGK 554 Query: 234 QKDVISNE 241 + + Sbjct: 555 MHEAVEGP 562 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 27/233 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 + L +++ A G+ + DT +L T ++ + + T G +P Sbjct: 28 NVRLETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLTVDYIEKTYAAGRIP 87 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + QIII + + Sbjct: 88 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSVNPEVDPDI 141 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 ++ A AL G +AA G + ++ + + + Sbjct: 142 PSMIAASAALA-------------VSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKL 188 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T+ ++ +E S++ + +++ +I+ +++ Sbjct: 189 DLVVAGTERAVLMV---ESEADQLSEEVMLGAVMFGHEKMQVVIEAIDELVEE 238 >gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] gi|257096715|sp|B5YHN2|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 710 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI- 59 +R GR+ +++R I+ + GS L G+T L TL ++ G I Sbjct: 319 IRADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLGTSEDEQKVDSLEGEIF 378 Query: 60 ---TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y LP S G A R+ G + RAL V+ I + Sbjct: 379 KTFMLHYNFLPFSVGEVKPLRAPGRREIGHGY----LAERALSYVIPSKDEFPYTIRVVS 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 D+++++G + A + GA ++L D +K VA ++ G++ Sbjct: 435 DILESNGSSSMATVCGATLSLMDAGV-------------PIKAPVAGVAMGLIKEGDKTV 481 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I Q + + S + F L AK ++K Sbjct: 482 VLTDILGMEDHYGDMDFKVAGTEKG-ITAFQMDVKISGISYEIFKKALKQAKQARLFILK 540 Query: 233 LQKDVISNE 241 + IS Sbjct: 541 KMAETISEP 549 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 79/221 (35%), Gaps = 26/221 (11%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +K GS L K+GDT++L T T +E + + G +P G K Sbjct: 19 FAKQTNGSVLAKYGDTYVLCTVVAEKTPKEGLDFVPLTIDYQEKAYSAGKIP---GGFFK 75 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE G+ R + R+I R +R + Q I + +I G Sbjct: 76 RE---GKPTDREILVSRLIDRPVRPLFPDGFNYETQGIASVLSYGDENIADILSIIGISS 132 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL G VAA+ GM+ I++ D E ++ T+ Sbjct: 133 AL-------------TISDIPFNGPVAAVRVGMVEEEFILNPDNDEAEKSILNLVVAGTE 179 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + V+G A A S++ L A I +I LQK Sbjct: 180 EA-VTMVEGGA--AECSEETLVEALKFAHTHIKKIIALQKK 217 >gi|268316873|ref|YP_003290592.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM 4252] gi|262334407|gb|ACY48204.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM 4252] Length = 772 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 20/243 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R+ GR +++R I + GS + G+T +L + TL + + + Sbjct: 332 RIDGRSLDEIRPIWMEVGYLPRVHGSAIFTRGETQVLASVTLGTSKDVQMIDQIFVQGDK 391 Query: 58 WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG R R G R + RAL +++ + I ++ Sbjct: 392 RFFLHYEFPPFCTGEIRFLRG-----PGRREIGHGYLAERALAAMLPDESSFPYTIRVNA 446 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 DV++++G + A++ +AL D ++ + + +G AI + D Sbjct: 447 DVLESNGSSSMASVCAGSLALMDAGVPVKKHVAGVAMGLIKEGDQVAI---------LTD 497 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + +++ L A+ ++ L + Sbjct: 498 ILGTEDHLGDMDFKVAGTRDG-ITACQMDIKIGGLTREIMQRALEQARRARMYILDLMEQ 556 Query: 237 VIS 239 I Sbjct: 557 TIE 559 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 88/233 (37%), Gaps = 27/233 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 + L ++K A G+ +V+ GDT +L TA E + ++ A G +P Sbjct: 18 LRLETGRLAKQANGAVVVRQGDTMVLCTAVLADEPREGQSFFPLTVEYREKFAAGGRIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+I RA+R + QII C VI AD A Sbjct: 77 --GGFIKRE---GRPTDKEILSSRLIDRAIRPLFPDGFFHEVQII--CYVISAD-DRYDA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + + G +A + G + G +V+ E D++ Sbjct: 129 DVLAGT----------GASAALLLAGAPFDGPIAEVRVGRVDGQFVVNPTLKELEQSDIN 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 V IV V+G E S++ L +A + I L + Q + ++ Sbjct: 179 L-VVAGKEDAIVMVEG--EMKEVSEEDMLEALEVAHEAIRKLCRGQLEFVAAH 228 >gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus Y51MC23] gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus Y51MC23] Length = 713 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R GR +R I + V A GS + G+T +L T TL I + + Sbjct: 328 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQIIDDLGIDETD 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + VS R+ G + RALR+V+ I + D Sbjct: 388 PFLVHYNFPPFSTGEVKRLRGVSRREVGHG----NLAKRALRAVLPSQEAFPYTIRVVGD 443 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGYP 173 V++++G + A + +AL D +K VA ++ G++ Sbjct: 444 VLESNGSSSMATVCAGSLALMDAGV-------------PVKAPVAGVAMGLVWENEKAVI 490 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED+ D+D T G + +Q + ++ L A++ ++ L Sbjct: 491 LTDILGLEDALGDMDFKVAGTRQG-VTALQMDNKVGGLPREVLKEALLQAREARLKILDL 549 Query: 234 QKDVI 238 + V+ Sbjct: 550 MEMVL 554 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 28/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + L +K A GS LV++GDT +L TA ++ +T E+ + Sbjct: 21 RTLILETGKYAKQASGSVLVRYGDTVVLATAQASDE----PVEADFLPLTVEFEERHYAV 76 Query: 71 ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G+ ++RE GR G ++ RM R +R + Q+I+ V+ AD Sbjct: 77 GKIPGSFMRRE---GRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVT--VLSAD---- 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D L + + +G VA++ G+L G +++ E Sbjct: 128 -------QKNPPDILGPIAASAALMLSDIPWEGPVASVRVGLLGGQLVLNPTLQELEESA 180 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +D V I+ V+ A+ ++ L A + ++ LQ+ + Sbjct: 181 LDL-VVAGSRDAILMVEAGAQE--VDEETLVQALEFAHREMQPILDLQERM 228 >gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii] gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii] Length = 250 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 84/240 (35%), Gaps = 21/240 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR R L + A GS + GDT ++ + + + G + Sbjct: 27 RIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLNC 86 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +T R K G +++ M+ +++ VDL + + V+Q+ Sbjct: 87 NVKYCSFATPVRGK----MGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVLQS 142 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 GG +T A +AL D + D VAA+S + G ++D E Sbjct: 143 GGGDLPVIVTCASLALADAGIVLYDL-------------VAAVSASSIQGQVLLDPSTSE 189 Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ D M I +V + E +S L L D A + + + + Sbjct: 190 ENCEDGSLMVAYMPSRKEITQVTMTGE---WSSSRASESLELCLDACAKIGDVMRSCLKE 246 >gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927] gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei] Length = 252 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 18/182 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +RL GR+ N+ R ++L +G C V G +H+ T +V + I Sbjct: 13 LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLEGKYNEVTI 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T + + + G R + R S++I + RSVV LS + QI I +V+ Sbjct: 73 TCDVVVAAFA-GERRR---EQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + DG + A I A +AL D M+D V + G++ G+ +VDL Sbjct: 129 KQDGSDKAACINAACLALIDASIAMKDV-------------VYTQTVGLIEGFDVVDLTT 175 Query: 180 GE 181 E Sbjct: 176 EE 177 >gi|33602856|ref|NP_890416.1| polynucleotide phosphorylase/polyadenylase [Bordetella bronchiseptica RB50] gi|81429864|sp|Q7WCQ0|PNP_BORBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33577298|emb|CAE35855.1| polyribonucleotide nucleotidyltransferase [Bordetella bronchiseptica RB50] Length = 719 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL ++ I + + Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHG----RLAKRALLPLLPAPEDFQYTIRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D D + +L A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ L A++ ++ +D Sbjct: 487 LGDEDHLGDMDFKVAGTETG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRDA 545 Query: 238 ISN 240 + Sbjct: 546 LEG 548 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 74/223 (33%), Gaps = 35/223 (15%) Query: 22 KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77 + A G+ LV DT +L T + + + T G +P G KRE Sbjct: 25 RQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLTVDYIEKTYAAGRIP---GGFFKRE 81 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 G+ + R+I R LR + Q++I + D A+ GA AL Sbjct: 82 ---GKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSVNPDIDPDIPAMIGASAAL 138 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G + A G + G +++ + + +D T++ Sbjct: 139 AISGI-------------PFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVAGTENA 185 Query: 198 HIV----EVQGSAE----RATFSQDHFFAMLNLAKDRIADLIK 232 ++ Q S E F + +N I DL++ Sbjct: 186 VLMVESEAKQLSEEIMLGGVVFGHEQMQTAIN----AIHDLVR 224 >gi|313901841|ref|ZP_07835262.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter subterraneus DSM 13965] gi|313467884|gb|EFR63377.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter subterraneus DSM 13965] Length = 762 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 94/250 (37%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55 +R GR+ ++R I + + A GS L + G T +LT A+L + +T + Sbjct: 323 IRPDGRRPAEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQIEE 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG A S R+ G + RAL V+ I + Sbjct: 383 FKRYMHHYNFPPYSTGEVAPLRAPSRREIGHG----ALAERALVPVLPDELDFPYTIRLV 438 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T A+ G+ +AL D +K VA ++ G++ Sbjct: 439 SEVLSSNGSTSMASTCGSTLALMDAGV-------------PIKAPVAGVAMGLIKEGDRF 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + +Q + A + L A+ ++ Sbjct: 486 AVLTDIQGIEDHLGDMDFKVAGTREG-VTAIQMDIKIAGVDRAVLETALEQARAGRLFIL 544 Query: 232 KLQKDVISNE 241 + VI Sbjct: 545 EKMLAVIDKP 554 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 27/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + +++ A GS LV++GDT +L TAT + + + G + Sbjct: 24 RPLVVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYAAGRI 83 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G+ +RE G+ R+ R+ R LR + QII+ D Sbjct: 84 P---GSFFRRE---GKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPE 137 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A I GA VAL G V A+ G+L G +++ + Sbjct: 138 IAGIIGASVAL-------------GISDIPWNGPVGAVEVGLLDGELVINPTAAQREHSR 184 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T I V+ A + + + I L++ Q+ +I+ Sbjct: 185 LDLTVAGTRDA-INMVEAGAHEVP--EATILDAIFRGHEEIRRLVEFQEAIIAQ 235 >gi|33591966|ref|NP_879610.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis Tohama I] gi|33597949|ref|NP_885592.1| polynucleotide phosphorylase/polyadenylase [Bordetella parapertussis 12822] gi|81425386|sp|Q7VZU0|PNP_BORPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81426411|sp|Q7W570|PNP_BORPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33571610|emb|CAE41100.1| polyribonucleotide nucleotidyltransferase [Bordetella pertussis Tohama I] gi|33574378|emb|CAE38716.1| polyribonucleotide nucleotidyltransferase [Bordetella parapertussis] gi|332381383|gb|AEE66230.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis CS] Length = 719 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V A GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL ++ I + + Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHG----RLAKRALLPLLPAPEDFQYTIRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D D + +L A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ L A++ ++ +D Sbjct: 487 LGDEDHLGDMDFKVAGTETG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRDA 545 Query: 238 ISN 240 + Sbjct: 546 LEG 548 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 35/223 (15%) Query: 22 KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77 + A G+ LV DT +L T + + + T G +P G KRE Sbjct: 25 RQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLTVDYIEKTYAAGRIP---GGFFKRE 81 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 G+ + R+I R LR + Q++I + D A+ GA AL Sbjct: 82 ---GKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSVNPDIDPDIPAMIGASAAL 138 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G + A G + G +++ + + +D T++ Sbjct: 139 AISGI-------------PFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVAGTENA 185 Query: 198 HIV----EVQGSAE----RATFSQDHFFAMLNLAKDRIADLIK 232 ++ Q S E F + A +N I DL++ Sbjct: 186 VLMVESEAKQLSEEIMLGGVVFGHEQMQAAIN----AIHDLVR 224 >gi|323705394|ref|ZP_08116969.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535296|gb|EGB25072.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium xylanolyticum LX-11] Length = 700 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKH 56 +R+ GR + +R I+ V GS + G T ++T ATL + I + + Sbjct: 311 IRVDGRGLDDIRPITCDVGVLPRTHGSAIFTRGQTQVMTVATLGPLGDIQILDGLGDEES 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL ++ I + Sbjct: 371 KRYMHHYNFPPFSVGETRPLRGPGRREIGHG----ALAERALEPMIPSEEEFPYTIRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ +AL D ++ + + +G + +I + D Sbjct: 427 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDIVSI---------LTD 477 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + A +D L A+ ++ + Sbjct: 478 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIAGIDRDILSLALEKARKGRLFILNKMLE 536 Query: 237 VISNE 241 I Sbjct: 537 TIKEP 541 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 27/226 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + A GS LV++GDT +L TA E V + + + G + Sbjct: 12 RKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERLYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q+I + D Sbjct: 72 P---GGFIKRE---GKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL G ++S ++ G I++ D D Sbjct: 126 IVAMIGSSVALS-------------ISDIPFNGPTGSVSVALVDGNFIINPDLEAREKSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T I+ V+ A ++ + A + I +++ Sbjct: 173 LHLTVSGTKDA-IMMVEAGANEVP--EEVMLDAIMYAHEYIKQIVE 215 >gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49] Length = 713 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 487 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 545 Query: 238 ISN 240 ++ Sbjct: 546 VAG 548 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 77/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 15 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 75 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + T + Sbjct: 129 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNDQYVLNPTREQLKTSRL 175 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 176 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 224 >gi|295399860|ref|ZP_06809841.1| polyribonucleotide nucleotidyltransferase [Geobacillus thermoglucosidasius C56-YS93] gi|294978263|gb|EFG53860.1| polyribonucleotide nucleotidyltransferase [Geobacillus thermoglucosidasius C56-YS93] Length = 712 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S V GS L G T +L T A + ++ + + Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLGIEET 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G G R + RAL VV I + Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L A+ +++ Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALLQARKGRMEILD 536 Query: 233 LQKDVISNE 241 I Sbjct: 537 HMMQTIREP 545 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + QI+ + D Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + D+ Sbjct: 129 AALLGSSLAL-------------TISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ A+ ++ + + I LI Q+++ + Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEIMLEAIMFGHEDIKRLIAFQEEIAAQ 225 >gi|121609766|ref|YP_997573.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter eiseniae EF01-2] gi|187611331|sp|A1WLP8|PNP_VEREI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|121554406|gb|ABM58555.1| 3' exoribonuclease [Verminephrobacter eiseniae EF01-2] Length = 757 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L ATL + + G Sbjct: 317 RIDGRDTRTVRPIEIRAGVLPRAHGSALFTRGETQALAVATLGTERDAQRIDALAGEYDD 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 377 RFMLHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKDGNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITREIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 + I Sbjct: 539 MQQAIGQ 545 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 77/230 (33%), Gaps = 34/230 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + + +++ A G+ LV DT +L T +++ + + T G +P Sbjct: 18 VVMETGEIARQASGAVLVSIDDTVVLATVVASRSIKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R LR + ++I T Sbjct: 77 --GSFFKREA---KPSEHETLTSRLIDRPLRPLFPQGFFNEVHLVI-----------HTL 120 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ A D + + G + A G + G ++ + +D Sbjct: 121 SLNPEVDA--DIAALIASSAALALSGIPFNGPIGAARVGYIQGEYRLNPGPTARKSSQLD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML-------NLAKDRIADLI 231 T++ ++ +E S++ + +A D I +L+ Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHQQGKVAIDAIHELV 225 >gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales bacterium 1_1_47] gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales bacterium 1_1_47] Length = 724 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V A GS L G+T L TL K + + Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGLTGEQRE 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALTAVLPNEEDFQYTMRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G ++L D LK VA ++ G++ Sbjct: 438 ICESNGSSSMASVCGGCLSLLDAGV-------------PLKDFVAGVAMGLIKEGNKFAV 484 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD G + +Q + S++ L AK+ ++ Sbjct: 485 LTDILGDEDHLGDMDFKVAGTDHG-VTALQMDIKIEGISKEIMQVALAQAKEGRMHILGK 543 Query: 234 QKDVISNE 241 + + Sbjct: 544 MHEAVEGP 551 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 77/233 (33%), Gaps = 27/233 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 + +++ A G+ + DT +L T ++ + + T G +P Sbjct: 17 NVRFETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLTVDYIEKTYAAGRIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + QIII + + Sbjct: 77 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSVNPEVDPDI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 ++ A AL G +AA G + ++ + + + Sbjct: 131 PSMIAASAALA-------------VSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T+ ++ +E S++ + +++ +I+ +++ Sbjct: 178 DLVVAGTERAVLMV---ESEADQLSEEVMLGAVMFGYEKMQVVIEAIDELVEE 227 >gi|312111628|ref|YP_003989944.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1] gi|311216729|gb|ADP75333.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1] Length = 712 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S V GS L G T +L T A + ++ + + Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLGIEET 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G G R + RAL VV I + Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L A+ +++ Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALLQARKGRMEILD 536 Query: 233 LQKDVISNE 241 I Sbjct: 537 HMMQTIREP 545 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + QI+ + D Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + D+ Sbjct: 129 AALLGSSLAL-------------TISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ A+ ++ + + I LI Q+++ + Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEIMLEAIMFGHEDIKRLIAFQEEIAAQ 225 >gi|332981620|ref|YP_004463061.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis 50-1 BON] gi|332699298|gb|AEE96239.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis 50-1 BON] Length = 708 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 91/250 (36%), Gaps = 28/250 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R GR+ +++R IS + GS L G T +LT ATL + + Sbjct: 312 RPDGRKLDEIRPISCEVGLIPRVHGSGLFTRGQTQVLTIATLGAPGDEQMLEDLSLEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P STG R+ G + RAL ++ I + + Sbjct: 372 RYIHHYNMPPYSTGEAKMMRGPGRREIGHG----ALAERALEPMIPSQEEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 V+ ++G T A++ G+ +AL D +K VA ++ G++ Sbjct: 428 VMSSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGVAMGLMKDEQSDKV 474 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + +Q + + A L A + ++ Sbjct: 475 AILTDIQGLEDFFGDMDFKVAGTADG-VTAIQMDIKVKGIDRSILEAALKQAYEGRMFIM 533 Query: 232 KLQKDVISNE 241 +VIS Sbjct: 534 NKMLEVISEP 543 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 27/234 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + + A G+ LV++GDT + T E + + + G + Sbjct: 12 RKLRIETGKLAEQANGAVLVRYGDTTVFVAVTASKEPREGIDFFPLSVDFEEKLYAVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q++ ++ D Sbjct: 72 P---GGYIKRE---GKPTEKAILTSRLIDRPIRPLFPKGYRNDVQVVAMPLSVEPDVPPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL +G + A+ G++ G +++ D + Sbjct: 126 VVAMVGASAALS-------------ISDIPFEGPIGAVLVGLVDGELVINPDAAQRERSR 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T I+ V+ A +D + + I L+ Q+ ++S Sbjct: 173 LHLTVAGTKDA-IMMVEAGANEVP--EDKILEAIMFGHEHIKQLVAFQEQIVSE 223 >gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius] Length = 277 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 91/254 (35%), Gaps = 34/254 (13%) Query: 2 RLSGRQENQM--REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58 R+ GRQ Q+ R + + + A+GS ++ G+T L+ ++ + K G Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPREMERKDETDMKSGR 95 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + + P S RE S QG +++ M+ +LR V L QI ++ V Sbjct: 96 LMTDMRFAPFSC-----RERGSWIQGSDEKDLSLMLLESLRPGVCLHKYPRSQIEVNVMV 150 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ++ DG A+T A +AL D M D V S ++D Sbjct: 151 LENDGSVLAHAVTCASMALADAGIEMYDL-------------VLGCSIRQESATYLIDPT 197 Query: 179 YGEDSTIDVD----------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 Y E++ ++ + I +Q E +D + + Sbjct: 198 YLEENGCNLASGSGDNFGSLTVAFLPSLNQISGLQSDGEMG---EDILTGGVRTCIEGCF 254 Query: 229 DLIKLQKDVISNEV 242 L + + ++ V Sbjct: 255 KLYPVIQQALTKAV 268 >gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus HB27] gi|75424073|sp|Q9ZAE1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81405907|sp|Q72JJ8|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus] gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27] Length = 713 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R GR +R I + V A GS + G+T +L T TL I + + Sbjct: 327 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDDLGIDETE 386 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + VS R+ G + RAL++V+ I + D Sbjct: 387 KFLVHYNFPPFSTGEVRRLRGVSRREVGHG----NLAKRALKAVMPKEEDFPYTIRVVGD 442 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V++++G + A + +AL D ++ VA ++ G++ Sbjct: 443 VLESNGSSSMATVCAGCLALMDAGV-------------PIRAPVAGVAMGLVWEENRAVI 489 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED+ D+D T G + +Q + ++ L A++ ++ L Sbjct: 490 LTDILGLEDALGDMDFKVAGTRKG-VTALQMDNKVGGLPREVLKEALLQAREARLKILDL 548 Query: 234 QKDVI 238 + V+ Sbjct: 549 METVL 553 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 29/236 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + L +K A GS LV++ DT +L TA E +T E+ + Sbjct: 20 RPLVLETGKYAKQASGSVLVRYADTVVLATAQASET----PVEADFLPLTVEFEERHYAV 75 Query: 71 ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G+ ++RE GR G ++ RM R +R + QII+ V+ AD Sbjct: 76 GKIPGSFMRRE---GRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVT--VLSAD---- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D L + + +G +AA+ G++ G +++ E Sbjct: 127 -------QKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQ 179 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D V I+ V+ AE ++ L A + +++LQ + ++ E+ Sbjct: 180 LDL-VVAGSKEAILMVE--AEAGEVDEETLVQALEFAHKEMQPILELQ-EAMAREL 231 >gi|327399809|ref|YP_004340678.1| polyribonucleotide nucleotidyltransferase [Hippea maritima DSM 10411] gi|327182438|gb|AEA34619.1| Polyribonucleotide nucleotidyltransferase [Hippea maritima DSM 10411] Length = 703 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56 +R+ GR +++R I+ V A GS + G+T L TL + I + Sbjct: 314 VRIDGRGLDEIRPITCEVGVLPRAHGSAVFTRGETQALVATTLGSREDAQIIDDVSEEGY 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y LP STG + G G R + RA+ ++ I + Sbjct: 374 ERFMLHYNFLPFSTGEVKR----LGPPGRREIGHGNLAKRAIEPMLPSEDDFPYAIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 D+++++G + A + G+ ++L D +K V+ ++ G++ GY Sbjct: 430 DILESNGSSSMATVCGSTLSLMDAGV-------------PIKKPVSGVAMGLIKYEGGYA 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 I+ D+ ED D+D T G I +Q + L AK+ ++ Sbjct: 477 ILTDILGDEDHYGDMDFKVAGTKDG-ITALQMDIKITGVDAVLLKEALYKAKEARLFILN 535 Query: 233 LQKDVISNE 241 V+ + Sbjct: 536 KMLAVLDSP 544 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 38/239 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------G 64 ++++ +K A+G+C+++ GDT +L TA ++ P +T Y G Sbjct: 12 KLTIETGWYAKQADGACVIRMGDTMVLATAVSSKEPPKEFL--DFLPLTVNYQERFYAAG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G VKRE G+ + R+I R++R + Q+II + Sbjct: 70 KIP---GGFVKRE---GKPTVHETLVSRLIDRSIRPLFPKDYKQEIQVIITTISADQEND 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDLDYGED 182 +I A +L G VA + L +D Sbjct: 124 PAIISILAASCSLC-------------LSDIPFLGPVAGVRVSRFENGLKAFASLKEIDD 170 Query: 183 STIDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 S N ++ I ++ A S+D + KD I L+ Q+++I Sbjct: 171 SR----LNLILAGTKDAINMIEAGA--GELSEDEMVDAIMFGKDNIDILLDAQEEIIKK 223 >gi|257451721|ref|ZP_05617020.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. 3_1_5R] Length = 743 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TATL K + + + Sbjct: 360 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 419 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + RALR V+ I + D Sbjct: 420 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 475 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL +K HVA I+ G++ Sbjct: 476 ITESNGSSSQASICGGSLALMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 522 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A ++++ Sbjct: 523 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHVARQQILEV 581 Query: 234 QKDVISNE 241 IS+ Sbjct: 582 MNTAISSP 589 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 29/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +++ + G+ ++++GDT LL+T + + + G Sbjct: 50 RTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 109 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE+ R + + R+I R +R + I+ Sbjct: 110 P---GGFNKRES---RPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEQNTPD 163 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I G+ +AL G VA ++ G + G I++ + Sbjct: 164 YLGIIGSSLALS-------------ISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSL 210 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +D + T ++VE A ++ + A D I + Q++ + Sbjct: 211 LDLSVAGTKDAVNMVE----AGAKELDEETMLKAILFAHDNIKKICAFQEEFVK 260 >gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase/polyadenylase [Burkholderia xenovorans LB400] gi|122970578|sp|Q142H7|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia xenovorans LB400] Length = 716 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITREIMQVALAQAKEGRLHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGARTAKPGQDFFPLTVDYLEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR I R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177 Query: 188 DANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ E Q +E F + +A D I DL++ Sbjct: 178 DLIVAGTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQ----IAIDAIHDLVR 226 >gi|289523245|ref|ZP_06440099.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503788|gb|EFD24952.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 741 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 96/248 (38%), Gaps = 22/248 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R GR +++R IS + A GS + G+T L TL +E++ ++ + Sbjct: 313 LRADGRAMDELRPISCEVSLLPRAHGSAVFTRGETQALVVTTLGMFGEDEQILDGLKLDE 372 Query: 56 -HGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 Y P S G R R G R + RA++ ++ + I Sbjct: 373 PPKRFMLHYNFPPFSVGEVRPMRG-----PGRREIGHGALAERAVKPLIPDESQFPYIIR 427 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + D+++++G + A++ GA ++L D + + + +G AI Sbjct: 428 VVSDILESNGSSSMASVCGASMSLMDAGVPIAKSVAGIAMGLIKEGDKYAI--------- 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L+ AK ++ + Sbjct: 479 LTDIQGLEDHYGDMDFKVAGTRDG-VTALQMDNKAGGITREILVQALDQAKRGRLQILDI 537 Query: 234 QKDVISNE 241 + I Sbjct: 538 MEKAIGRP 545 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 78/222 (35%), Gaps = 26/222 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T ++K A G+ ++GDT +L TA +E E V + + G +P G Sbjct: 20 TGHLAKQANGAVYARYGDTAVLVTACMEDEPREDVDFFPLIVDYEERFYAAGKIP---GG 76 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE G+ + R++ R++RS+ + + ++ D Sbjct: 77 FIKRE---GKPSESAILSARLVDRSIRSLFPEHM--KNDVHVVATILSVD---------- 121 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 D L + G V A+ G + G +++ ED V Sbjct: 122 -QTNPPDVLAINAASAALAISDIPWDGPVGAVRVGYIDGSLVINPM-EEDMQNSTLDLVV 179 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 I V+G A ++ L LA+ I L+ Q Sbjct: 180 AGHKEGITMVEGGA--GEVPEEVLVDALELAQQEIRRLVDFQ 219 >gi|257467022|ref|ZP_05631333.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium gonidiaformans ATCC 25563] gi|315918159|ref|ZP_07914399.1| polyribonucleotide nucleotidyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313692034|gb|EFS28869.1| polyribonucleotide nucleotidyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 707 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TATL K + + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + RALR V+ I + D Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLALMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ L+ A ++++ Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALSQAHVARQQILEV 545 Query: 234 QKDVISNE 241 IS+ Sbjct: 546 MNAAISSP 553 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 29/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +++ + G+ ++++GDT LL+T + + + G Sbjct: 14 RTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE+ R + + R+I R +R + I+ Sbjct: 74 P---GGFNKRES---RPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEQNTPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I G+ +AL G VA ++ G + G I++ + Sbjct: 128 YLGIIGSSLALS-------------ISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEQSL 174 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +D + T ++VE A ++ + A D I + Q++ + Sbjct: 175 LDLSVAGTKDAVNMVE----AGAKELDEETMLKAILFAHDNIKKICAFQEEFVK 224 >gi|15605776|ref|NP_213153.1| polynucleotide phosphorylase/polyadenylase [Aquifex aeolicus VF5] gi|81343315|sp|O66593|PNP_AQUAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|2982946|gb|AAC06562.1| polyribonucleotide nucleotidyltransferase [Aquifex aeolicus VF5] Length = 775 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 25/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59 +R+ GR+ N++R I + + G+ + G T T T + I G + Sbjct: 312 VRIDGRKPNEIRPIWIEVHPFERPHGNAIFTRGQTQAYVTVTLGTPDEALIIETIAEGEV 371 Query: 60 ----TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y M P S G R+ G + RA+ ++ I + Sbjct: 372 FKRFMLHYSMPPFSVGEAKPWGPPRRREIGHG----ALAERAIEPLLPPEEEYPFIIRVV 427 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 D+++++G T A + GA +AL D M+D HVA I+ G++ Sbjct: 428 SDILESNGSTSMATVCGASLALFDAGVPMKDNK-----------HVAGIAMGLILEKDRY 476 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I VQ + +++ L A++ ++ Sbjct: 477 VILSDILGDEDHLGDMDFKVAGTKDG-ITSVQMDIKVKGITKEIMLDALKQAREGRLYIL 535 Query: 232 KLQKDVISNE 241 + + I Sbjct: 536 EKMYEAIPEP 545 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 32/237 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67 I + +K +GS +V+ G T +L TA + ++ V + + YG +P Sbjct: 15 PIIIETGKYAKLTDGSVVVRQGGTAVLVTAVMSDEPITDVDFTPLAVDYRERASAYGRIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G KRE G+ R + R+I R +R + +II + AD Sbjct: 75 ---GGFTKRE---GKPTDREILVSRVIDRPIRPLFPEGFFHD--VIITALTLSADDKYDP 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AITGA ALH +G +A + + G + + Y + Sbjct: 127 DVLAITGASAALH-------------ISRIPFEGPIAGVRVCRVNGEFVANPTYEQRKEA 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D+D T IV V+G + ++ L D I ++I+ Q + + +V Sbjct: 174 DLDIVMAGTKDA-IVMVEGGGKEIP--EEVLADALFFGLDAIKEVIEAQ-ERLREKV 226 >gi|317058280|ref|ZP_07922765.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_5R] gi|313683956|gb|EFS20791.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_5R] Length = 707 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TATL K + + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + RALR V+ I + D Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLALMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A ++++ Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHVARQQILEV 545 Query: 234 QKDVISNE 241 IS+ Sbjct: 546 MNTAISSP 553 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 29/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +++ + G+ ++++GDT LL+T + + + G Sbjct: 14 RTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE+ R + + R+I R +R + I+ Sbjct: 74 P---GGFNKRES---RPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEQNTPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I G+ +AL G VA ++ G + G I++ + Sbjct: 128 YLGIIGSSLALS-------------ISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSL 174 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +D + T ++VE A ++ + A D I + Q++ + Sbjct: 175 LDLSVAGTKDAVNMVE----AGAKELDEETMLKAILFAHDNIKKICAFQEEFVK 224 >gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis C4D1M] gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis C4D1M] Length = 715 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 76/233 (32%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 + L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 NVRLETGEIARQASGAVIVDVEDTVILATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR I R+I R LR + Q++I + D Sbjct: 77 ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDVPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177 Query: 188 DANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ E Q +E F + +A D I DL++ Sbjct: 178 DLIVAGTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQ----IAIDAIHDLVR 226 >gi|295696164|ref|YP_003589402.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM 2912] gi|295411766|gb|ADG06258.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM 2912] Length = 727 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 MR GR +++R IS + GS L G T L T A + ++ + + Sbjct: 310 MRPDGRALDEIRPISCEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEES 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A S R G + RAL V+ I + Sbjct: 370 KRFMHHYNFPPFSVGEARPIRAPSRRDIGHG----ALGERALEPVIPSEEEFPYTIRLVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +AL D +K VA ++ G++ Sbjct: 426 EVLESNGSTSQASICGSTLALMDAGV-------------PIKAPVAGVAMGLVKEGDRVA 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G + +Q + ++D + L A ++ Sbjct: 473 ILTDIQGMEDHLGDMDFKVAGTAAG-VTALQMDIKIKGLTRDILASALEQAHRGRMFILG 531 Query: 233 LQKDVISNE 241 +VI Sbjct: 532 KMLEVIQQP 540 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 26/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R + L K A + V++GDT +L T T+ + + + + G +P Sbjct: 12 RRLVLETGKLAKQATAAVTVRYGDTVVLATVTMSKEPKDLDFFPLTVNYEERLYAVGKIP 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D Sbjct: 72 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVALVLSVDQDCPPEI 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A + G AL G +A + G + G +V+ + D+ Sbjct: 126 AGMIGTSAAL-------------TISPIPFDGPIAGLVVGRVDGQFVVNPTVAQTEKSDM 172 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 V +V V+ A + + +++ LI LQ+ + Sbjct: 173 HL-VVAGSRSAVVMVEAGANEVP--ESEMLDAIMFGHEQLQPLIDLQERM 219 >gi|157164996|ref|YP_001467328.1| polynucleotide phosphorylase/polyadenylase [Campylobacter concisus 13826] gi|187470951|sp|A7ZEX0|PNP_CAMC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|112801842|gb|EAT99186.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter concisus 13826] Length = 732 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 88/243 (36%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54 +R GR ++R IS+ V A GSCL G T L ATL + + Sbjct: 343 IRADGRGLEEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDSDAQMYDILTEKAP 402 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G +A R+ G + RAL +DL++ I + Sbjct: 403 LVEKFMFNYNFPGFSVGEASPLKAPGRRELGHG----NLAKRALAPSIDLAS--PYTIRV 456 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A++ G +AL + + + + +G A+ + Sbjct: 457 VSEILESNGSSSMASVCGGSLALRAAGVNTQKLVAGVAMGLIFEGEKHAV---------L 507 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D T G I +Q + S + L AK ++ L Sbjct: 508 TDIMGLEDHDGDMDFKVAGTSDG-ITALQMDIKLGGISLEVLKEALYQAKRGREHILALM 566 Query: 235 KDV 237 Sbjct: 567 TQA 569 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 80/257 (31%), Gaps = 57/257 (22%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 V+K A G+ L++ +T +L T E+ + ++ G +P G VKR Sbjct: 19 VAKQASGAVLLRVKNTVVLATVAREDVQVEEDFLPLTVQYIEKAYAAGKIP---GGYVKR 75 Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAW 134 E + G R+I R+LR + QI++ V+ AD + ++ A Sbjct: 76 ET---KPGDFETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPEVDLQVVSLNAAS 130 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194 VAL+ + V + G + +++ E +D T Sbjct: 131 VALY-------------LSDIPVNRPVCGVRVGYIDDKFVINPSNSELKQSAIDLYVAGT 177 Query: 195 DSGHIVEVQGSAERA------------------------------TFSQDHFFAMLNLAK 224 ++ ++ + FS+D ++ A Sbjct: 178 KD-ELLMIEMRSLPQQTTQLIPMVAIEPMIDPSLSDSMAQKQVMNEFSEDKMVEAIDFAG 236 Query: 225 DRIADLIKLQKDVISNE 241 I ++ Sbjct: 237 KAILRASSAYEEAFKEH 253 >gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1001] gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1001] Length = 715 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 75/233 (32%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 + L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 NVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR I R+I R LR + Q++I + D Sbjct: 77 ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKDSAL 177 Query: 188 DANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ E Q +E F + ++ I DL++ Sbjct: 178 DLVVAGTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQVAID----AIHDLVR 226 >gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1003] gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1003] Length = 715 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 + L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 NVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR I R+I R LR + Q++I + D Sbjct: 77 ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRAQMKDSAL 177 Query: 188 DANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ E Q +E F + A ++ I DL++ Sbjct: 178 DLVVAGTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQAAID----AIHDLVR 226 >gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis] gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis] Length = 180 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 8/155 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR ++ R A GS +FG+T ++ + + + + G + Sbjct: 33 VRPDGRSFSECRPAYFRTGAVNAAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDVGRLN 92 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ST R QG +E M+ ++L + L + + V++ Sbjct: 93 CNVSYTTFSTPVRG--------QGSDCKEFSSMLHKSLEGAIMLETFPKTTVDVFALVLE 144 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155 + G + ++ A +AL D M D + + Sbjct: 145 SGGSDLSVIVSCASLALADAGIMMYDLVAGVSVHE 179 >gi|147677610|ref|YP_001211825.1| polynucleotide phosphorylase/polyadenylase [Pelotomaculum thermopropionicum SI] gi|187610305|sp|A5D2S6|PNP_PELTS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146273707|dbj|BAF59456.1| polyribonucleotide nucleotidyltransferase [Pelotomaculum thermopropionicum SI] Length = 734 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR N++R IS+ V GS L G T +L+ TL EE++ + + Sbjct: 325 LRIDGRALNEVRPISVEVGVLPRPHGSGLFTRGQTQILSVVTLGTVSEEQILDGLGVEES 384 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + R+ G + RAL +V+ I I Sbjct: 385 KRFMHHYNFPPYSTGETRPLRSPGRREIGHG----ALAERALAAVIPGEEEFPYTIRIVS 440 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 + ++++G T ++ G+ +AL D + VA ++ G++ Sbjct: 441 EALESNGSTSMGSVCGSTLALMDAGV-------------PISAPVAGVAMGLIKEGDNFT 487 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +++ F L A + ++ Sbjct: 488 VLTDIQGFEDHLGDMDFKVAGTAKG-ITALQMDIKIPGITREVFEKALAQAYEGRMHILN 546 Query: 233 LQKDVI 238 +V+ Sbjct: 547 KMLEVL 552 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66 R + L ++ A G+ V++GDT +L TAT+ V + + G + Sbjct: 16 RPMILETGRLANQASGAVFVRYGDTAVLVTATVAPTVRAGIDFFPLTVDYEERFYAVGKI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE+ R ++ R+I R +R + Q+I + D Sbjct: 76 P---GGFIKRES---RPSEKAILSGRLIDRPIRPLFPKEMRNEVQVIATILSVDQDNAPE 129 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA ALH LK + + G + G +++ + D Sbjct: 130 IAAMVGASAALH-------------ISEIPLKFPIGGVIVGRVDGRFVINPVLAQAEKSD 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ V+ A+ ++ ++ + + +++ Sbjct: 177 MHLVVAGTKDA-VMMVEAGAKEVP--EEVILEAISFGHETVKEIVA 219 >gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis Bu] Length = 715 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTAA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + D Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPDIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E S+D + +A D I DL++ Sbjct: 178 DLVVAGTERAVLMV---ESEADQLSEDVMLGAVVFGHEQMQIAIDAIHDLVR 226 >gi|291514384|emb|CBK63594.1| polyribonucleotide nucleotidyltransferase [Alistipes shahii WAL 8301] Length = 747 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 93/245 (37%), Gaps = 16/245 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +RL GR+ +++R I A GS + G+T LTT T L+EKV + Sbjct: 323 VRLDGRKTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKLDEKVKDEVLVQGT 382 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG +S R+ G + RAL+ ++ L + + Sbjct: 383 EQFVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMIPLGEDNPYAVRVVS 438 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A + +AL D + + + G ++ G + D Sbjct: 439 DILESNGSSSMATVCAGTLALMDAGVKLRKPVSGIAM-----GLISDSETGKWA--VLSD 491 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + A L A+ ++ + Sbjct: 492 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEVLAAALEQARKGRMHILGKLTE 550 Query: 237 VISNE 241 I+ Sbjct: 551 CIAEP 555 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 87/236 (36%), Gaps = 28/236 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R+I + K A+GS +VK GDT LL T + ++ A G Sbjct: 20 RQIEIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKEKYAAVGRF 79 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KREA R + R+I RALR + ++ + ++I AD + Sbjct: 80 P---GGFMKREA---RANDSEVLVARLIDRALRPLFPAD--YHAEVYVTVNLISADKDIQ 131 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D L + + G ++ + G ++ Y E D Sbjct: 132 -----------PDALAGLAASAALAVSDIPFGGPISEVRVVRRNGEYAINPTYSEMPECD 180 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D V +I+ V+G E S++ + A + I +Q + +S E+ Sbjct: 181 LDI-MVGGTIDNILMVEG--EMKEVSEEVMLGAIKFAHEEIKKHCAVQIE-LSKEL 232 >gi|226493578|ref|NP_001146202.1| hypothetical protein LOC100279772 [Zea mays] gi|219886165|gb|ACL53457.1| unknown [Zea mays] Length = 733 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 11/244 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GRQ +++R + GS L GDT +L T TL ++ G Sbjct: 129 LRVDGRQLDEVRPLYCESNTYPLLHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 188 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + + ++ Sbjct: 189 KRFMLHYSFPPFSIDEVAKRGGLNRREVGHGT----LAEKALLAVLPPESDFPYTVRVNA 244 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ +DG T A++ G +AL D + + + L V + + + D Sbjct: 245 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVG--LVSQVDPATGDISNYRILTD 302 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + A D L A+ ++ Sbjct: 303 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQ 361 Query: 237 VISN 240 IS Sbjct: 362 EIST 365 >gi|153951894|ref|YP_001397657.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. doylei 269.97] gi|187610250|sp|A7H2C7|PNP_CAMJD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152939340|gb|ABS44081.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. doylei 269.97] Length = 718 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R IS+ + A GSCL G T L ATL + + +N Sbjct: 335 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 394 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL VD + I + Sbjct: 395 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 448 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + + A+ + Sbjct: 449 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 499 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G I +Q + Q+ L AK+ ++ + + Sbjct: 500 DIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 558 Query: 236 DV 237 + Sbjct: 559 EA 560 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 85/242 (35%), Gaps = 61/242 (25%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G L++ G + +L T EEK +T +Y G +P G Sbjct: 19 VAKQATG-VLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 70 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 71 YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 125 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + G I++ + E +D Sbjct: 126 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 171 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D LNLA+ Sbjct: 172 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 231 Query: 226 RI 227 I Sbjct: 232 AI 233 >gi|229544442|ref|ZP_04433500.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1] gi|229324927|gb|EEN90604.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1] Length = 704 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S V GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ I + Sbjct: 375 KRFMHHYNFPSFSVGE----TGPMRGPGRREIGHGALGERALEPVIPDEKEFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGI-------------PIKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + A S++ L A+ ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIAGLSREILEEALQQARKGRMQILD 536 Query: 233 LQKDVISN 240 IS Sbjct: 537 HMMSTISK 544 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++G+T +L TA+ E K V + + G +P Sbjct: 15 RPLTVEIGQLAKQANGAALVRYGETAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D Sbjct: 75 ---GGFIKRE---GRPSEKAILSSRLIDRPIRPLFADGFRNEVQVVSMVMSVDQDCTPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------VSDIPFEGPIAGVIVGRVDGKFLINPTVEQMEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ A+ ++ + + I LI Q+ +++ Sbjct: 176 HLTVAGTKDA-INMVEAGAKEVP--EEVMLEAIMFGHEEIKRLIAFQEKIVAE 225 >gi|187929298|ref|YP_001899785.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii 12J] gi|226702680|sp|B2U7R6|PNP_RALPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187726188|gb|ACD27353.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12J] Length = 724 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L A L +E++ ++ Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVAALGTKSDEQIIDALQGEYRD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPPADEFGYTIRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + +L+ + A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGSLALMDAGVPIKAHVAGVAMGLILEDNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L AK+ ++ + Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 542 Query: 238 ISN 240 + Sbjct: 543 MGG 545 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ + +++ A G+ L+ DT +L T + + + T G +P Sbjct: 17 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYLEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R LR + Q++I V+ Sbjct: 77 ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVI--HVL-------- 120 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I A D + + G V A G G +++ + + + D+ Sbjct: 121 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E S++ + +A + I DL++ Sbjct: 178 DLVVAGTERAVLMV---ESEAQQLSEEIMLGAVVYGHEQMQIAINAIHDLVR 226 >gi|78044607|ref|YP_360578.1| polynucleotide phosphorylase/polyadenylase [Carboxydothermus hydrogenoformans Z-2901] gi|123575939|sp|Q3ABA6|PNP_CARHZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77996722|gb|ABB15621.1| polyribonucleotide nucleotidyltransferase [Carboxydothermus hydrogenoformans Z-2901] Length = 731 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 97/250 (38%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R+ GR+ +++R I + GS L G T +L+ TL + I + + Sbjct: 325 IRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLGAVGDVQILDDLGIEES 384 Query: 57 GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G R R G R + RAL V+ + I I Sbjct: 385 KRFMHHYNFPPYSVGEVRPMRG-----PGRREIGHGALAERALEPVIPPEEVFPYTIRIV 439 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G T ++ G+ +AL D +K VA ++ G++ Sbjct: 440 SEVLESNGSTSMGSVCGSTLALMDAGV-------------PIKAPVAGVAMGLIKEGDEV 486 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G I +Q + A ++D L A++ ++ Sbjct: 487 AILTDIQGIEDALGDMDFKVAGTKDG-ITALQMDIKIAGVTRDILTKALAQAREGRMHIL 545 Query: 232 KLQKDVISNE 241 +VIS Sbjct: 546 GKMLEVISEP 555 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R + LT V+ A GS LV +GDT +L TAT E + + + G + Sbjct: 17 RPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLTVDYEERFYAVGKI 76 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + I+ + D Sbjct: 77 P---GGFIKRE---GRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQDNPPE 130 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G + A+ G++ +++ + Sbjct: 131 IAAMNGASAAL-------------TLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSR 177 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ V+ A+ ++ + + + ++ Sbjct: 178 LHLVVAGTRDA-VMMVEAGAQEVP--EEIMIEAITRGHEEVKKIVA 220 >gi|163784067|ref|ZP_02179020.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp. 128-5-R1-1] gi|159880666|gb|EDP74217.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp. 128-5-R1-1] Length = 708 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 87/249 (34%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56 R+ GR+ +++R I + + GS L G T L TL + Sbjct: 316 RIDGRKPDEIRPIWIKVGMLPRVHGSALFTRGQTQALGVVTLGAPGEEQIEESIEEGEEK 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A S R+ G + RAL ++ I + Sbjct: 376 KRFMLHYNFPPFSVGEARPPRAPSRREIGHG----ALAERALEPLIPSEEDFPYVIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G T A + ++L D M+ HVA I+ G+L Sbjct: 432 EILESNGSTSMATVCAGSLSLFDAGVPMQK-------------HVAGIAMGLLKEEDEYI 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L A+ ++ Sbjct: 479 ILTDILGDEDHLGDMDFKVAGTRDG-VTAIQMDIKIKGLTKEILEKALQQARKARFHILD 537 Query: 233 LQKDVISNE 241 L + I Sbjct: 538 LMYEAIPQP 546 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 91/241 (37%), Gaps = 35/241 (14%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGMLP 67 EIS+ K A G+ +VK G+T + A + + I ++ T YG +P Sbjct: 19 EISIETGYFAKQANGAVIVKSGETEVFVAAVVSSEAQPDIDFLPLTVEYREKTYAYGKIP 78 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G VKRE G+ R + R+I R +R + +II + AD Sbjct: 79 ---GGFVKRE---GKPSNREILVSRLIDRPIRPLFPKGF--HNDVIITAMTLSADDKNDP 130 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AITG AL +G +A + + G I + Y E Sbjct: 131 DVLAITGVSAAL-------------MISEAPFEGPIAGVRVARVDGKFIANPTYEERDKS 177 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL----IKLQKDVISNE 241 D+D T IV V+G +E ++ + A + I L I+LQK V + Sbjct: 178 DMDIVVAGTKDA-IVMVEGGSEEVP--EEEILEAIMFAHEHIKQLIDFQIELQKKVGKEK 234 Query: 242 V 242 + Sbjct: 235 I 235 >gi|294464676|gb|ADE77845.1| unknown [Picea sitchensis] Length = 256 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 22/241 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GRQ + R + A GS +FG T ++ + + + G + Sbjct: 31 IRSDGRQLLECRLAFMKTGAVNAAAGSAYAEFGSTKVIVSVFGPRESSKAQIYSDTGRLN 90 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ST R K QG +E M+ +AL V L+ + + V++ Sbjct: 91 CSVSFATFSTPIRGK-----LSQGTEHREYSTMLHKALEGAVMLNTFPKATVDVFALVLE 145 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 + GG IT A +AL D M D + +S + I+D Sbjct: 146 SGGGDLPVVITCATLALADAGIMMFDVVSAVSVS-------------SIGKSLIIDPTTE 192 Query: 181 EDSTID-VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E++ D I ++ + E +S L L D + L + + + Sbjct: 193 EENCQDGGLMVACTPSRNEITQLIITGE---WSSTRVSEALELCLDACSKLAAIMRSCLK 249 Query: 240 N 240 Sbjct: 250 E 250 >gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phytofirmans PsJN] gi|226702630|sp|B2T2E3|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phytofirmans PsJN] Length = 718 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T + ATL K + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVVATLGTKGDEQNIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILSKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR I R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177 Query: 188 DANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ E Q +E F + +A D I DL++ Sbjct: 178 DLIVAGTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQ----IAIDAIHDLVR 226 >gi|145589238|ref|YP_001155835.1| polynucleotide phosphorylase/polyadenylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|187610308|sp|A4SXQ7|PNP_POLSQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145047644|gb|ABP34271.1| 3' exoribonuclease [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 722 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTARDEQIIDALEGEYRD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + + I + + Sbjct: 376 RFMFHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPSAEDFAYSIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D ++ + +L G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G I +Q + +++ L AK+ ++ ++ Sbjct: 483 LGDEDHLGDMDFKVAGTANG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQEA 541 Query: 238 ISN 240 + + Sbjct: 542 MGS 544 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 79/232 (34%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 ++++ +++ + G+ +V DT ++ T + + + + T G +P Sbjct: 17 QVTMETGEIARQSGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLTVDYLEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR I R+I R LR + L Q++I I D Sbjct: 77 ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVIHVLSINPD----- 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 D + + G V A G G +++ E +T ++ Sbjct: 126 --------VPSDIPALIAASAALAISGIPFAGPVGAARVGYANGQYLLNPTRTEQATSEL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T + ++ +E S++ + A + I +L+ Sbjct: 178 DLIVAGTQAAVLMV---ESEANQLSEEVMLGAVVYGHDQMQTAINAINELVA 226 >gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160] gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160] Length = 711 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNRFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547 Query: 238 ISN 240 ++ Sbjct: 548 VAG 550 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 + L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 NVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR I R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRLQMKESAL 177 Query: 188 DANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ E Q +E F + ++ I +L++ Sbjct: 178 DLVVAGTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|156543904|ref|XP_001607068.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase [Nasonia vitripennis] Length = 765 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 17/248 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR+ +R I+ + K GS L + G T +L T TL+ + + M Sbjct: 356 RCDGRKYTDLRNITCQVDLFKPLHGSALFQRGQTQVLCTVTLDSPDSALKMDTMSMLSSG 415 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T + +G G R + R LR+++ I Sbjct: 416 VKEKNFFLHYEFPPYATNETGR----TGPVGRREMGHGALAERGLRAILPKE--YPFTIR 469 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A++ G +AL D + + + V K + + Sbjct: 470 LTSEVLESNGSSSMASVCGGSLALMDAGVPIAAPAAGVAIGLVTKYD--KDTKHIKDYKI 527 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + L A + ++ + Sbjct: 528 LTDILGIEDYLGDMDFKIAGTKKG-VTALQADIKIPGLPLKIVMESLEQATEAKTQILNI 586 Query: 234 QKDVISNE 241 + IS Sbjct: 587 MNEAISKP 594 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 75/222 (33%), Gaps = 28/222 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 ++ A+G + GDT ++ T + V ++ + +Y + G R+ Sbjct: 60 YARLADGCAVATLGDTSVMVTTVSKSQSSGVNSFLP------LVVDYRQKAAAAG-RIPT 112 Query: 77 EAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 G EI R+I R+LR + Q++ + + + +I GA Sbjct: 113 NFFRRELGHTEHEILTSRLIDRSLRPLFPQKYNYETQVVCNMLALDGNNDPDVLSINGAS 172 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194 AL G V A+ G++ +++ E ++ T Sbjct: 173 AALA-------------VSDIPWNGPVGAVRVGLIDNEVLINPTRREIQQSSLNLIVTAT 219 Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQK 235 +V ++GSA+ L +++ +QK Sbjct: 220 QQNLVVMLEGSADNILVP--ELRKALKAGVKECQIIVQSIQK 259 >gi|95929621|ref|ZP_01312363.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas acetoxidans DSM 684] gi|95134318|gb|EAT15975.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas acetoxidans DSM 684] Length = 699 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 95/244 (38%), Gaps = 20/244 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTK 55 +R+ GR+ N++R IS V A GS L G+T L TA+ E+++ I+ + Sbjct: 312 IRIDGRKMNEIRPISCEVGVLPRAHGSALFTRGETQALVSTTLGTASDEQRMDN-IQGME 370 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P G R R+ G + R+ ++ + I Sbjct: 371 FKKFMLHYNFPPFCVGETSMRLFPGRREIGHGM----LAERSATKIMPEFDDFPYTVRIV 426 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A++ GA ++L D +D + + +G AI + Sbjct: 427 SEILESNGSSSMASVCGASMSLMDAGVPAKDAVAGIAMGLIKEGDDIAI---------LS 477 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G + +Q + ++D L AK+ ++ Sbjct: 478 DILGDEDHLGDMDFKVTGTKEG-VAALQMDIKIDGVTRDIMQRALAQAKEGRLHILGEMA 536 Query: 236 DVIS 239 IS Sbjct: 537 KAIS 540 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 27/227 (11%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 +++ + A+G+ +V +G+T +L T T+ E + + G +P Sbjct: 14 PLTIETGKMARQADGATIVTYGETKILCTVVSAKTMREGQDFFPLTVNYQEKFYASGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ +RE + R I R+I R +R + L QII VI AD Sbjct: 74 ---GSFFRRERGA---TERETLICRLIDRPMRPLFPKGYLYETQIIPT--VISAD----- 120 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 V D L + ++ G +A + G + G I + + D+ Sbjct: 121 ------CVNDPDTLSILAASASVSVSDIPFGGPIAGVRVGRVDGEFIANPTLEQQEQSDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + V I+ V+G E S+D + I LI++Q Sbjct: 175 EI-VVAGSKDAIMMVEG--EADLISEDEMLEAVFFGHQAIQPLIEMQ 218 >gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST] gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST] Length = 308 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 18/184 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R+ V A+GS V+ G+T ++ + ++P + + G + Sbjct: 43 RKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFC 102 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + P + R + R + + + AL V + QI + +V++ Sbjct: 103 DLKFSPFAPAVRKTHQT-----DARERSMTAALTSALNPSVCRHLFPNLQIDVFANVLED 157 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG AIT A +AL D M D V A + G+L ++D E Sbjct: 158 DGSALAVAITAAGLALGDACVPMFDI-------------VTAATAGVLGDRVVMDPTAEE 204 Query: 182 DSTI 185 ++ Sbjct: 205 EALC 208 >gi|171463523|ref|YP_001797636.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226702675|sp|B1XUJ5|PNP_POLNS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|171193061|gb|ACB44022.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 722 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTARDEQIIDVLEGEYRD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + + I + + Sbjct: 376 RFMFHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPSAEDFAYSIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D ++ + +L G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G I +Q + +++ L AK+ ++ ++ Sbjct: 483 LGDEDHLGDMDFKVAGTANG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQEA 541 Query: 238 ISN 240 + + Sbjct: 542 MGS 544 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 80/231 (34%), Gaps = 34/231 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 ++++ +++ A G+ +V DT ++ T + + + + T G +P Sbjct: 17 QVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLTVDYLEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR I R+I R LR + L Q+++ I D Sbjct: 77 ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVVHVLSINPD----- 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 D + + S G V A G G +++ E +T ++ Sbjct: 126 --------VPSDIPALIAASAALAVSSIPFAGPVGAARVGYANGQYLLNPTRTEQATSEL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLI 231 D T + ++ +E S++ + A + I DL+ Sbjct: 178 DLIVAGTQAAVLMV---ESEANQLSEEVMLGAVVYGHDQMQTAINAINDLV 225 >gi|74316711|ref|YP_314451.1| polynucleotide phosphorylase/polyadenylase [Thiobacillus denitrificans ATCC 25259] gi|123759157|sp|Q3SKX5|PNP_THIDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|74056206|gb|AAZ96646.1| polyribonucleotide nucleotidyltransferase protein [Thiobacillus denitrificans ATCC 25259] Length = 706 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I++ V A GS L G+T L TL + + Sbjct: 315 RIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQTIDALEGSYSD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 375 RFMLHYNMPPYATGETGRVGSPKRREIGHG----RLAKRALLAVLPSKEEFGYTMRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G ++L D LK HVA I+ G++ Sbjct: 431 ITESNGSSSMASVCGGCLSLMDAGA-------------PLKAHVAGIAMGLIKEGNRFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G + +Q + +++ A L AK+ ++ + Sbjct: 478 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKITGITKEIMQAALTQAKEGRMHILGI 536 Query: 234 QKDVISN 240 K +S Sbjct: 537 MKASVSE 543 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 78/230 (33%), Gaps = 34/230 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 +++L +++ A G+ +V DT +L T + +V + + T G +P Sbjct: 14 QVTLETGEIARQASGAVVVNMDDTMVLVTVVAKNEVKPGQDFFPLTVDYQEKTYAAGRIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE+ R I R+I R +R + QII + Sbjct: 74 ---GGFLKRES---RPSEGETLISRLIDRPIRPLFPEGFFNEVQIIATVMSSNPEVSADI 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A G + G +++ E + Sbjct: 128 PALIGASAALSLSGL-------------PFDGPVGAARVGFINGEYVLNPTNAELKDSAL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADL 230 D T+S ++ +E +D + A + I +L Sbjct: 175 DLVVAGTESAVLMV---ESEAMELPEDIMLGAVVFGHTQMQAAINAINEL 221 >gi|296160625|ref|ZP_06843440.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1] gi|295889151|gb|EFG68954.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1] Length = 716 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L +++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR I R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177 Query: 188 DANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ E Q +E F + +A D I DL++ Sbjct: 178 DLIVAGTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQ----IAIDAIHDLVR 226 >gi|295676033|ref|YP_003604557.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1002] gi|295435876|gb|ADG15046.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. CCGE1002] Length = 711 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNRFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 36/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 + L +++ A G+ +V DT +L T + + + T G +P Sbjct: 18 VRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R LR + Q++I + + Sbjct: 77 --GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADIP 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G V A + +++ + +D Sbjct: 132 ALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALD 178 Query: 189 ANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232 T+ ++ E Q +E F + ++ I +L++ Sbjct: 179 LVVAGTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MEX-5] gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MEX-5] Length = 714 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L V++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. 383] gi|123742554|sp|Q39EE1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383] Length = 715 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L V++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E S+D + +A D I +L++ Sbjct: 178 DLVVAGTERAVLMV---ESEADQLSEDVMLGAVVFGHEQMQVAIDAIHELVR 226 >gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria AMMD] gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria MC40-6] gi|122322637|sp|Q0BDC6|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702626|sp|B1YTR1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD] gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria MC40-6] Length = 714 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L V++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|167043480|gb|ABZ08177.1| putative 3' exoribonuclease family, domain 1 [uncultured marine microorganism HF4000_APKG2H5] Length = 264 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 92/241 (38%), Gaps = 16/241 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R SGR + R+ L V AEGS V+ GDT + L+ VP + G + Sbjct: 23 RHSGRGRWEARDTELEIGVLPRAEGSARVRMGDTIVYAGVKLQIMVP-YPDRPNQGGLMC 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113 + P + N G S E+ R++ R +R +D+ L G + Q+I Sbjct: 82 SAEVRPVAGPN-----WEPGPPSPESIELGRVVDRGIRESGCIDVDGLCLIPGEKAWQVI 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGY 172 +D I DG A A+ + E + + + S + G Sbjct: 137 LDLFAISDDGNLFDAFALAGIAAMRTAMIPEERFEISGEDRPLNISKTPIMCSYHKVGGR 196 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D D E+ D + + D GH+ +Q R F+ F ++ A+ R +L + Sbjct: 197 FVYDADGREELGGDERIHITLGDDGHVHSLQK-GLRGIFTASEFTEIMEHAQSRCNELRE 255 Query: 233 L 233 + Sbjct: 256 M 256 >gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria IOP40-10] gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria IOP40-10] Length = 714 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L V++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T+ ++ V+ A++ F + ++ I +L++ Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226 >gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta] Length = 282 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 77/203 (37%), Gaps = 19/203 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N+ R I L + A+GS ++ G+T ++ + ++P G + Sbjct: 37 RHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSVFDPREIPNKTGYCVQGELFC 96 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P S R + Q +E ++ RAL V L + Q+ + VI Sbjct: 97 EFKFAPFSHRKRKLHQ-----QDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVIDN 151 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 G AAI A +AL + M G V A + G+ +VD E Sbjct: 152 GGSALAAAIMAASLALANAGVPMF-------------GLVTASTVGICDQTYLVDPTDTE 198 Query: 182 DSTIDVDANFVMTDSGHIVEVQG 204 ++ + D+ I+ VQ Sbjct: 199 EAFCSIKTAQGTADNHGII-VQA 220 >gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia vietnamiensis G4] gi|187470949|sp|A4JGD4|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4] Length = 715 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEHG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L V++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + D Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPDIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E +D + +A D I +L++ Sbjct: 178 DLVVAGTERAVLMV---ESEADQLPEDVMLGAVVFGHEQMQIAIDAIHELVR 226 >gi|56478759|ref|YP_160348.1| polynucleotide phosphorylase/polyadenylase [Aromatoleum aromaticum EbN1] gi|81356612|sp|Q5NZR7|PNP_AZOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56314802|emb|CAI09447.1| polyribonucleotide nucleotidyltransferase protein [Aromatoleum aromaticum EbN1] Length = 699 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 95/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I + V GS L G+T L ATL I + G Sbjct: 316 RIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRDEQIIDAIAGEYRE 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RAL + + S + + + Sbjct: 376 SFLLHYNFPPFSTGETGRMGVTKRREVGHG----RLAKRALIAALPADEDFSYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +A+ D M+ + + +G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLAMMDAGVPMKAHVAGIAMGLIKEGNRFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ L A + ++ L K Sbjct: 483 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIQGITKEIMQVALAQAGEGRIHILALMKQA 541 Query: 238 ISNE 241 +++ Sbjct: 542 LASH 545 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 34/232 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +V DT +L T + + + G +P Sbjct: 16 VTLETGEIARQAGGAVIVNMDDTIVLATVVAAKEAKAGQDFFPLTVDYVEKFYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + Q+II + + Sbjct: 75 --GGFFKRE---GRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIITVLSLNPEVDPDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G G +++ + +++ Sbjct: 130 AMIGASAALA-------------ISGVPFDGPIGACRVGYSGGQYLLNPTVEQLKASELN 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 T++ ++ +E S++ + +A I +L+++ Sbjct: 177 LVVAGTEAAVLMV---ESEARELSEEVMLGAVVFGHQQMQVAIRAINELVEV 225 >gi|71018287|ref|XP_759374.1| hypothetical protein UM03227.1 [Ustilago maydis 521] gi|46099099|gb|EAK84332.1| hypothetical protein UM03227.1 [Ustilago maydis 521] Length = 273 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 23/244 (9%) Query: 1 MRLSGRQENQMREISLTRRVSK--YAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHG 57 R+ GR++ ++R I + S+ A+G + G T + T + Sbjct: 12 FRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARSGANVMHDRA 71 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + E + P + R +R R E I V+ QI I Sbjct: 72 SVNVEVSVAPWGSMERRRRNRGDRRL----VEFANSIKSTFEPVIHTHLYPRSQIDIFVQ 127 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V Q DGG AAI + +AL D M+D VA++SCG+ ++DL Sbjct: 128 VHQQDGGVLPAAINASTLALLDAGIAMQD-------------FVASVSCGIHSTSAMLDL 174 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 E+ + V+ + I ++ + F + LA +A L + Sbjct: 175 SNTEEQDLPHVTVAVLPRTKQITL---ASLETRLHVERFEQIFTLAIQAVAVLHNEMELA 231 Query: 238 ISNE 241 + + Sbjct: 232 VRDR 235 >gi|206560707|ref|YP_002231472.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia J2315] gi|257096670|sp|B4E5M6|PNP_BURCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|198036749|emb|CAR52649.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia J2315] Length = 713 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 487 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 545 Query: 238 ISN 240 +S Sbjct: 546 VSG 548 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L V++ A G+ +V DT +L T + + + T G +P Sbjct: 15 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 75 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 129 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E S+D + +A D I +L++ Sbjct: 176 DLVVAGTERAVLMV---ESEADQLSEDVMLGAVVFGHEQMQIAIDAIHELVR 224 >gi|85373534|ref|YP_457596.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter litoralis HTCC2594] gi|123409685|sp|Q2NBZ2|PNP_ERYLH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|84786617|gb|ABC62799.1| polyribonucleotide nucleotidyltransferase [Erythrobacter litoralis HTCC2594] Length = 769 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57 R+ GR+ +++R I + GS L G+T + T TL E++ + + Sbjct: 320 RIDGRKTDEVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDSEQMIDGLEGLSYS 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R+ G ++ RALR V+ + I + D Sbjct: 380 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAFRALRPVLPDNEEFPYTIRVLSD 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D ++ + + +L+G + D+ Sbjct: 436 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGD---------DFTVLSDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D ++ G I +Q + A +Q+ L AK A ++ + Sbjct: 487 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKVAGITQEIMTKALEQAKAGRAHILGKMTEA 545 Query: 238 ISN 240 + + Sbjct: 546 LGS 548 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 78/237 (32%), Gaps = 41/237 (17%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++L +++ A+G+ L +G+T +L T V +T Y S Sbjct: 16 LTLETGQIARQADGAVLATYGETVVLCAVTAARSV---KEGQDFFPLTVHYQ-EKFSAAG 71 Query: 73 RVKREAVS--GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TA 128 R+ GR + R+I R +R + I + V+ DG T Sbjct: 72 RIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNE--INVIAQVLSYDGETEPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG----EDS 183 A+ A AL G + A G G +++ ED Sbjct: 130 AMIAASAAL-------------TISGLPFMGPIGAARVGFTNDGEYVLNPSVVDALGEDG 176 Query: 184 TID----VDANFVMT---DSGHIVEVQGSAERATFSQDH----FFAMLNLAKDRIAD 229 +D + VM ++ + E Q F+ + A+++LA+ D Sbjct: 177 NLDLVVAATQDAVMMVESEAKELTEEQMLG-AVMFAHEESRKVIGAIIDLAEQAAKD 232 >gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei] Length = 252 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 18/182 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +RL GR++N+ R ++L +G C V G +H+ T +V + I Sbjct: 13 LRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTI 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T + + + G R + R S++I + RSVV LS + QI I +V+ Sbjct: 73 TCDVVVAAFA-GERRR---EQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + DG + A I A +AL D M D V + G++ G+ +VDL Sbjct: 129 KQDGSDKAACINAACLALIDASIAMRDV-------------VYTQTVGLIEGFDVVDLTT 175 Query: 180 GE 181 E Sbjct: 176 EE 177 >gi|255019829|ref|ZP_05291905.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254970758|gb|EET28244.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 692 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + + GS L G+T L ATL K ++ Sbjct: 313 RIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTKGDEQIVDALQGESRD 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RA+ +V+ + + I + Sbjct: 373 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAVAAVLPSESEFPYSLRIVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 +++++G + A + GA +AL D LK VA ++ G++ G Sbjct: 429 ILESNGSSSMATVCGASLALMDAGV-------------PLKAPVAGVAMGLIKDGERYAV 475 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G + +Q + +++ L A ++ Sbjct: 476 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKIDGITREIMATALEQAHAGRLHILSK 534 Query: 234 QKDVISN 240 V++ Sbjct: 535 MNAVLAQ 541 Score = 81.7 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 67/198 (33%), Gaps = 26/198 (13%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77 + A+G+ LV G+T +L TA ++ +T Y + G KRE Sbjct: 24 RQADGAVLVTLGETMVLVTAVGRRELKP---GQDFFPLTVNYQEKAYAAGRIPGGFFKRE 80 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 GR + R+I R LR + L Q+I + + A+ GA AL Sbjct: 81 ---GRPTEKETLTSRLIDRPLRPLFPKGFLNEVQVIATVLSVDQENDPDIPAMIGASAAL 137 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 +G + A G + G +++ + + +D T Sbjct: 138 AISGI-------------PFQGPIGAARVGYVDGDFVLNPSFSALARSQLDLVVAGTRQA 184 Query: 198 HIV---EVQGSAERATFS 212 ++ E Q E S Sbjct: 185 VLMVESEAQELPEATMLS 202 >gi|116181272|ref|XP_001220485.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51] gi|88185561|gb|EAQ93029.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51] Length = 277 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 88/255 (34%), Gaps = 26/255 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------------- 46 +R+ GR+ N++R ++ R A+GS ++ G T ++ T + Sbjct: 13 LRVDGRRWNELRRVNAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGVGGAGGG 72 Query: 47 VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106 I + S+ +R + GR R+ E+ + AL + + Sbjct: 73 GGGGGGAGGKAEIVVGIVIAGFSSVDRKRH----GRGDKRTLELASTVANALAASLHTHL 128 Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166 QI + V+ DG A I A +A D M D G + + Sbjct: 129 FPHSQINVSLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTA-----GSTSTYAA 183 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 P++DL++ E+ + + +S + + + ML + D Sbjct: 184 NDEGADPLLDLNHQEEQELPGLTVATLGESDRVAVLVCESRVQV---SRLEGMLAVGVDG 240 Query: 227 IADLIKLQKDVISNE 241 + ++ V+ ++ Sbjct: 241 CKQMREILDRVVRDK 255 >gi|218665115|ref|YP_002424891.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] gi|257096668|sp|B7J4D8|PNP_ACIF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218517328|gb|ACK77914.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 690 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L AT +E++ ++ Sbjct: 311 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALQGESRD 370 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RA+ +V+ + + + + Sbjct: 371 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAIAAVLPTDSEFPYSLRVVSE 426 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V++++G + A + GA +AL D LK VA ++ G++ Sbjct: 427 VLESNGSSSMATVCGASLALMDAGV-------------PLKAPVAGVAMGLIKEGARFAV 473 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G + +Q + +++ L A ++ L Sbjct: 474 LTDILGDEDHLGDMDFKVAGTEQG-VTALQMDIKIDGITREIMAQALQQALAGRLHILGL 532 Query: 234 QKDVIS 239 V+S Sbjct: 533 MNGVLS 538 Score = 88.6 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 31/235 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + L + A+G+ LV GDT +L TA ++ +T Y + Sbjct: 11 RRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKP---GQDFFPLTVNYQEKAYAA 67 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + R+I R +R + + Q+I + D Sbjct: 68 GKIPGGFFKRE---GRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDNDPD 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G + A + G +++ Y + +T Sbjct: 125 ILALVGASAALAVSGI-------------PFNGPIGAARVAYIDGKYVLNPSYAQLTTSQ 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 +D T ++ +E S++ + + I + L ++ Sbjct: 172 LDLVVAGTRQAVLMV---ESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREA 223 >gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter tengcongensis MB4] gi|81481549|sp|Q8RA43|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Thermoanaerobacter tengcongensis MB4] Length = 707 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 94/251 (37%), Gaps = 30/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R+ GR + +R I V GS + G T +LT AT + ++ I + + Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGAIGDIQILEGIGDEEF 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL V+ I + Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V+ ++G T A++ G+ +AL D +K VA I+ G++ Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGIAMGLIKEEDEVL 474 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G + +Q + +D L A+ A L Sbjct: 475 ILTDIQGIEDFLGDMDFKVAGTEKG-VTAIQMDIKIPGIDRDILQMALEKARK--ARLYV 531 Query: 233 LQK--DVISNE 241 LQK +VI Sbjct: 532 LQKMLEVIKEP 542 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + V++ A G+ VK+GDT +L TA E + + ++ G + Sbjct: 13 RKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSIGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q+I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVDPDAQPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL G +++ G++ G +++ Y + Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSL 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T IV V+ A+ ++ + A I +++ Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEVP--EETILDAIVYAHQYIKQIVE 216 >gi|217970113|ref|YP_002355347.1| polynucleotide phosphorylase/polyadenylase [Thauera sp. MZ1T] gi|217507440|gb|ACK54451.1| Polyribonucleotide nucleotidyltransferase [Thauera sp. MZ1T] Length = 699 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL I + G Sbjct: 316 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIAGEYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + R+ G R+ R+L +++ S + + + Sbjct: 376 RFLLHYNFPPFCTGETGRFGITKRREVGHG----RLAKRSLVAMLPKPEEFSYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +A+ D LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGGSLAMMDAGV-------------PLKNHVAGIAMGLIKDGNRFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ A L AK+ ++ L Sbjct: 479 LTDILGDEDHLGDMDFKVAGTENG-ITGLQMDIKIQGITKEIMHAALEQAKEGRLHILGL 537 Query: 234 QKDVISN 240 + + Sbjct: 538 MQQALGT 544 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 78/232 (33%), Gaps = 34/232 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +V +T +L T + + G +P Sbjct: 16 VTLETGEVARQAGGAVIVNMDETVVLATVVGAKEARPGQDFFPLTVDYVEKFYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + + Q+I+ + + + Sbjct: 75 --GGFFKRE---GRPSEKEILTSRLIDRPIRPLFPDGFMNEVQVIVTVLSLNPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G V A G L G I++ E + Sbjct: 130 AMIGASAALA-------------ISGLPFNGPVGAARVGYLDGKYILNPTATELQSS--A 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 N V+ + V + S E +D + A I DL+++ Sbjct: 175 MNLVVAGTQTAVLMVES-EAQELPEDVMLGAVVFGHEQMQTAIKAINDLVEV 225 >gi|198282699|ref|YP_002219020.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|226702590|sp|B5EMD4|PNP_ACIF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|198247220|gb|ACH82813.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 692 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L AT +E++ ++ Sbjct: 313 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALQGESRD 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RA+ +V+ + + + + Sbjct: 373 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAIAAVLPTDSEFPYSLRVVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V++++G + A + GA +AL D LK VA ++ G++ Sbjct: 429 VLESNGSSSMATVCGASLALMDAGV-------------PLKAPVAGVAMGLIKEGARFAV 475 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G + +Q + +++ L A ++ L Sbjct: 476 LTDILGDEDHLGDMDFKVAGTEQG-VTALQMDIKIDGITREIMAQALQQALAGRLHILGL 534 Query: 234 QKDVIS 239 V+S Sbjct: 535 MNGVLS 540 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 31/235 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + L + A+G+ LV GDT +L TA ++ +T Y + Sbjct: 13 RRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKP---GQDFFPLTVNYQEKAYAA 69 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + R+I R +R + + Q+I + D Sbjct: 70 GKIPGGFFKRE---GRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDNDPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G + A + G +++ Y + +T Sbjct: 127 ILALVGASAALAVSGI-------------PFNGPIGAARVAYIDGKYVLNPSYAQLTTSQ 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 +D T ++ +E S++ + + I + L ++ Sbjct: 174 LDLVVAGTRQAVLMV---ESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREA 225 >gi|110597075|ref|ZP_01385364.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans DSM 13031] gi|110341266|gb|EAT59731.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans DSM 13031] Length = 731 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 87/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR ++R IS+ + A GS L G+T L T TL K + N+ Sbjct: 332 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNSADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RA++ V I I D Sbjct: 392 KFMLHYNFPPFSVGETGRIGSTGRREIGHG----NLAERAIKMVAPTEQEFPYTIRIVSD 447 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +AL D + + + + +G A+ + D+ Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKEGSAYAV---------LSDI 498 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + L A+ ++ + Sbjct: 499 LGNEDHLGDMDFKVTGTRDG-ITACQMDIKIDGLDYHVLETALEQARKGRLHILDKMDEA 557 Query: 238 I 238 I Sbjct: 558 I 558 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 80/231 (34%), Gaps = 32/231 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTA-----TLEEKVPMWIRNTKHGWITAEYGMLP 67 +S+ K A+G+ +V+ GDT +L T T + ++ + G P Sbjct: 15 LSIETGKMAKQADGATVVRLGDTMVLATVVSSKKTPPPNQDYFPLQVEYREKYSAAGKFP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ--ADGGT 125 G KRE R + R+I RALR + L QIII DG Sbjct: 75 ---GGFFKRET---RPSEKEVLSARLIDRALRPLFPDGYLYETQIIITVISSDQINDGD- 127 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 + G A + + ++ + G + G I++ D E + Sbjct: 128 ----VLGGIAA----------SAAIMVSDIPFRNAMSEVRVGRINGKFIINPDVNELAES 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D+D T I ++G E S+ + D I L LQ + Sbjct: 174 DLDICIGGTKD-TICMLEG--EMQEISEAEMLDAIKFGHDAIKRLCTLQDE 221 >gi|225871841|ref|YP_002753295.1| polyribonucleotide nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196] gi|254782698|sp|C1F8M1|PNP_ACIC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225791918|gb|ACO32008.1| polyribonucleotide nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196] Length = 806 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56 +R R +++R+I++ V GS L G+T L TATL + Sbjct: 316 VRPDRRGFDEIRQITIEVGVLPRTHGSALFTRGETQALVTATLGTNDDSQRLETFEGEQK 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + V R+ G + RA+ +V+ + + Sbjct: 376 KRFMLHYNFPPFSVGEVGRMTGVGRREVGHG----ALAERAISAVLPGEDESPYALRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A++ GA +AL D ++ + V +G AI + D Sbjct: 432 DILESNGSSSMASVCGASLALMDAGIPLKGAVAGVAMGLVKEGDEYAI---------LTD 482 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + + + + A+ L+ + Sbjct: 483 IAGAEDHYGDMDFKVAGTRKG-ITALQMDIKISGITGQIMREAMEQARRGRMFLLDKMDE 541 Query: 237 VIS 239 +++ Sbjct: 542 ILA 544 Score = 82.1 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 29/230 (12%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 ++ K A G+ LV G++ +L TA +E + + + G +P Sbjct: 14 KLHFETGRMAKQASGAALVTQGESVVLATAVAAPDPKEGIDFFPLTVDYREYAYAGGRIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R R I R +R + Q+I + Sbjct: 74 ---GGFIKRE---GRPSEREILTSRQIDRPIRPLFPEGFRNETQVIALVFSADKENDPDI 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I + G V A+ G + G +++ Y E + Sbjct: 128 VGIN-------------AASAALALSDIPFAGPVGAVRVGYVNGEYVINPSYAERRDSSI 174 Query: 188 DANFVMTDSGHIVEVQ-GSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + V T G IV ++ GSAE ++ ++ I ++ + Sbjct: 175 NITVVGTMDG-IVMIESGSAE---VPEEVVLGAIDFGHTEIKKIVAAINE 220 >gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus SA-01] gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus SA-01] Length = 714 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R GR +R I + V GS + G+T +L T TL I + + Sbjct: 328 RADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLGTVTLGTGRDEQIIDDLGIDETE 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + VS R+ G + RAL++V+ I + D Sbjct: 388 KFLVHYNFPPFSTGEVKRLRGVSRREIGHG----NLAKRALKAVLPPEEAFPYTIRVVGD 443 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 V++++G + A + +AL D LK VA ++ G++ G Sbjct: 444 VLESNGSSSMATVCAGCLALMDAGV-------------PLKAPVAGVAMGLVWEGERAVI 490 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED+ D+D T G + +Q + ++ L A++ ++ L Sbjct: 491 LTDILGLEDALGDMDFKVAGTRKG-VTALQMDNKVGGLPREVLKEALMQAREARMKILDL 549 Query: 234 QKDVI 238 + V+ Sbjct: 550 MESVL 554 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 32/232 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + L +K A GS LV++GDT +L TA E+ +T E+ + Sbjct: 21 RPLVLEAGKYAKQASGSVLVRYGDTVVLATAQASEE----PIEADFLPLTVEFEERHYAV 76 Query: 71 ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 G+ ++RE GR G ++ RM R +R + Q+I+ V+ AD Sbjct: 77 GKIPGSFMRRE---GRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVT--VLSADQKNP 131 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 T A AL +G VAA+ G++ G +++ E S Sbjct: 132 PDILGPTAASAAL-------------MLSDIPWEGPVAAVRVGLIGGQFVLNPTLQELSE 178 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D V I+ V+ A+ ++ L A + ++ LQ++ Sbjct: 179 SALDL-VVAGSRDAILMVEAGAQE--VDEEMLVQALEFAHREMQPILDLQEE 227 >gi|288818483|ref|YP_003432831.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter thermophilus TK-6] gi|288787883|dbj|BAI69630.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter thermophilus TK-6] gi|308752073|gb|ADO45556.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter thermophilus TK-6] Length = 705 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56 +R+ GR+ ++R IS+ + + GS + G T T TL + + + Sbjct: 311 VRIDGRKPEEIRPISIEIKPFERPHGSAIFTRGQTQAFATVTLGSPHEAQLVESIYEGEV 370 Query: 57 -GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG R+ G + RA+ ++ I I Sbjct: 371 FKRFMLHYNFPPFSTGEAKPWGPPRRREIGHG----ALAERAIEPLIPPEEEFPYIIRIV 426 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY-- 172 ++++++G T A + +AL D +K HVA I+ G++ G Sbjct: 427 SNILESNGSTSMATVCAGSLALFDAGV-------------PIKKHVAGIAMGLIMEGERY 473 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I VQ + ++ L AK ++ Sbjct: 474 VILSDILGDEDQLGDMDFKVAGTKDG-ITSVQMDIKIKGLKKEIMIESLMQAKRGRLYIL 532 Query: 232 KLQKDVISNE 241 + + I Sbjct: 533 EKMYEAIPEP 542 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 32/237 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67 I + +K ++G+ +V+ GDT +L TA + E+ + + + ++ +G +P Sbjct: 14 PIIIETGHYAKLSDGAVVVRQGDTAVLVTAVVSEEPLQDIDFMPLSVDYREQSSAWGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G VKRE G+ R + R+I R +R + ++I + AD Sbjct: 74 ---GGFVKRE---GKPTDREVLVSRVIDRPIRPLFPEGFFHD--VVITALTLSADDKYDP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AITGA ALH +G +A + + G + + Y E Sbjct: 126 DVLAITGASAALH-------------ISRIPFEGPIAGLRVCRIEGKFVANPTYEERQKA 172 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D++ + I+ V+G A+ ++ F L + +LI Q++ + +V Sbjct: 173 DLEI-ILAVSKDSIIMVEGGAKE--VDEEVFANALYFGLEAGKELISAQEE-LREKV 225 >gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis RB2256] gi|123380103|sp|Q1GVQ8|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256] Length = 771 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR Q+R I A GS L G+T + T TL K + + +G Sbjct: 316 RIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATCTLGTKDAEQMIDGLNGLSYQ 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G ++ RAL V+ I + D Sbjct: 376 HFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHPVLPSKDEFPYTIRLTSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D ++ + + +L+G AI + D+ Sbjct: 432 ITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAI---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ F A L AK+ A ++ Sbjct: 483 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITREIFEAALAQAKEGRAHILGEMNKA 541 Query: 238 ISN 240 + Sbjct: 542 LGE 544 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 27/225 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++L V++ A+G+ + G+T +L T + V +T Y S Sbjct: 16 LTLETGKVARQADGAVIATLGETVVLCAVTAAKSV---KDGQDFFPLTVHYQ-EKYSAAG 71 Query: 73 RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128 R+ +G +E + R+I R +R + I V+ DG Sbjct: 72 RIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNE--INAIAQVLSYDGHNEPDIL 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ A AL G + A G L G I++ ++ + D Sbjct: 130 AMVAASAAL-------------TISGVPFMGPIGAARVGYLNGEYILNPT--DEQVAEGD 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + V+ + V + S E S++ + A D +++K Sbjct: 175 LDLVVAATHDAVMMVES-EANELSEEVMLGAVLFAHDACKEVVKA 218 >gi|255567379|ref|XP_002524669.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] gi|223536030|gb|EEF37688.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] Length = 958 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 13/241 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 R+ GR+ +++R + GS L GDT +L T TL + Sbjct: 365 FRVDGRRLDEVRPLFCKAGPLPILHGSSLFNRGDTQVLCTVTLGAPGDAQRLESLVGPPT 424 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + I+ Sbjct: 425 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEDDFPYTVRINS 480 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 +V+ +DG T A + G +AL D + + + V + S G + Y ++ Sbjct: 481 EVMASDGSTSMATVCGGSMALMDAGIPLREHVAGVSVGLVSEVDP---STGEIKDYRVLT 537 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T +G + +Q + A D L+ A ++ + Sbjct: 538 DILGLEDHLGDMDFKIAGTRNG-VTAIQLDIKPAGIPLDIICECLDHALKGRLQILDHME 596 Query: 236 D 236 Sbjct: 597 Q 597 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 75/219 (34%), Gaps = 34/219 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ISL ++++A G+ ++ T +L+T T +T +Y + G Sbjct: 66 ISLETGEIARFANGAVVLSMDQTKVLSTVT----SSKGDAVRDFLPLTVDYQEKQFAQGV 121 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 ++RE G R R+I R +R + Q++ V+ +DG Sbjct: 122 IPNTFMRRE---GAPKERELLCGRLIDRPIRPLFAPGFYHEVQVMAS--VLSSDGKQDPD 176 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A AL G + I G + G IV+ E S D Sbjct: 177 VMAANATSAAL-------------MLSDIPWGGPIGVIRIGRIGGQFIVNPTMDELSLSD 223 Query: 187 VDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAK 224 ++ + T + ++VQ S+ A L LA Sbjct: 224 LNLVYACTKDKTLMIDVQA----REISEKDLEAALRLAH 258 >gi|82703668|ref|YP_413234.1| polynucleotide phosphorylase/polyadenylase [Nitrosospira multiformis ATCC 25196] gi|123740603|sp|Q2Y5X9|PNP_NITMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|82411733|gb|ABB75842.1| 3' exoribonuclease [Nitrosospira multiformis ATCC 25196] Length = 701 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I++ + GS L G+T L ATL + G Sbjct: 314 RIDGRDTRTVRPITIRTGLLPRTHGSALFTRGETQALVVATLGTGRDEQKIDALQGDYSE 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL +V+ + + + Sbjct: 374 RFMLHYNMPPYATGETGRVGTPKRREIGHG----RLAKRALVAVLPSPEEFGYSLRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D LKGHVA I+ G++ Sbjct: 430 ITESNGSSSMASVCGGCLALMDAGV-------------PLKGHVAGIAMGLIKEGNRFAV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ A L A++ ++ + Sbjct: 477 LTDILGDEDHLGDMDFKVAGTENG-ITALQMDIKIQGITKEILHAALVQAREGRMHILAI 535 Query: 234 QKDVI 238 + V+ Sbjct: 536 MRQVL 540 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 36/231 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ +++ A + +V GDT +L T + +T +Y + G Sbjct: 13 QLTFETGEIARQAHAAIMVSMGDTVVLVTVVG---AKSAKQGQDFFPLTVDYQERSYAAG 69 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 + KRE GR + R+I R +R + + Q++ + Sbjct: 70 RIPGSFFKRE---GRPSEKEILTSRLIDRPIRPLFPENFYNEVQVVATVLSSDNEVDADI 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G + A G + G +++ D + Sbjct: 127 PAMLGASAALVLSGI-------------PFNGPIGAARIGYINGEYVLNPDTS--ALKQT 171 Query: 188 DANFVMTDSGH-IVEVQGSAERATFSQDHFFAM-------LNLAKDRIADL 230 N V+ + ++ V+ A S+D + +A D I +L Sbjct: 172 QLNLVVAGTRQAVLMVESDAME--LSEDVMLGAIVYGHQQMQVAIDAINEL 220 >gi|270697519|ref|ZP_06222988.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212] gi|270315955|gb|EFA28017.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212] Length = 93 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 52/92 (56%) Query: 148 SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207 N + +KG V+AIS G++ G + DL+Y EDS + D N VM + G ++EVQG+AE Sbjct: 1 ENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAE 60 Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 FS + +L+LAK + Q++ + Sbjct: 61 GEPFSHEELLTLLDLAKQGCNQIFIAQREALG 92 >gi|258516323|ref|YP_003192545.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum acetoxidans DSM 771] gi|257780028|gb|ACV63922.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum acetoxidans DSM 771] Length = 746 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +++R IS+ V GS L G T +L+ TL EE++ + + Sbjct: 322 IRMDGRALDEVRPISVEAGVLPRTHGSGLFTRGQTQILSVVTLGAISEEQILDGLGTEES 381 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + R+ G + GRAL ++ I + Sbjct: 382 KRYMHHYNFPPFSTGETKMMRSPGRREIGHG----ALAGRALEPMIPGEEEFPYTIRVVS 437 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 + ++++G T ++ G+ +AL D +K V+ ++ G++ Sbjct: 438 EALESNGSTSMGSVCGSTLALMDAGV-------------PIKAPVSGVAMGLIKEDDEIV 484 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + A +Q+ L A ++ Sbjct: 485 VLTDIQGLEDALGDMDFKVAGTAKG-INALQMDIKVAGVTQEILEKALQQAYTGRMHIMG 543 Query: 233 LQKDVIS 239 +VIS Sbjct: 544 KMMEVIS 550 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 92/240 (38%), Gaps = 31/240 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +++ V+K A G+ LV +GDT +L+TAT L E + + ++ G + Sbjct: 13 RVLTIETGRVAKQAGGAVLVAYGDTVVLSTATMSRTLREGIDFFPLTVEYEERLYAVGRI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KREA R + R+I R++R + QII + D Sbjct: 73 P---GGFIKREA---RPSENAILSCRLIDRSIRPLFPKGFRNETQIINTIMSVDQDHAPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G AL G + + G + G I++ + + Sbjct: 127 MAAMIGTSAAL-------------TISDAPFNGPIGGVIVGRVDGELIINPNAA--QSAK 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKDVISNEV 242 D + V+ + V + + +++ + D I ++ + +++ I ++ Sbjct: 172 SDLHLVVAGTKDAVMMVEAGANEV-TEEVMLDAIAYGHDVIRQIVDFIDEFRQEAIEQQL 230 >gi|323701874|ref|ZP_08113544.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum nigrificans DSM 574] gi|323533178|gb|EGB23047.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum nigrificans DSM 574] Length = 738 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +++R IS+ V GS L G T +LT ATL +E++ + + Sbjct: 324 LRIDGRAIDEVRPISVEVGVLARTHGSGLFTRGQTQILTVATLGCVSDEQILDGLGLEET 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + R+ G + RAL ++ + + + Sbjct: 384 KRYMHHYNFPPFSTGETKPMRSPGRREIGHG----ALAERALEPMIPPEEVFPYTLRVVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 + ++++G T ++ G+ +AL D +K VA ++ G++ Sbjct: 440 EALESNGSTSMGSVCGSTLALMDAGV-------------PIKAPVAGVAMGLIMEEDQFT 486 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I +Q + +++ F L A ++ Sbjct: 487 VLTDIQGLEDHLGDMDFKVAGTANG-ITALQMDIKIPGITREVFEQALAQAYRGRMHILS 545 Query: 233 LQKDVI 238 +VI Sbjct: 546 KMLEVI 551 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R+++L ++K A G+ LV +GDT +L TAT+ + + + G +P Sbjct: 16 RKLTLETGRLAKQASGAVLVTYGDTMVLVTATVAKNTRDIDFFPLTVDYEERLYAVGKIP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D Sbjct: 76 ---GGFIKRE---GRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVLSVDQDNAPEI 129 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ GA ALH LK + + G + G +++ + D+ Sbjct: 130 AAMIGASAALH-------------ISKIPLKKPIGGVIVGRVDGQFVINPVVRQAENSDM 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 TD ++ V+ A+ +D + + + +++K Sbjct: 177 HLVVAGTDDA-VMMVEAGAKEVP--EDQILEAIMFGHEVVKEVVK 218 >gi|169831097|ref|YP_001717079.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C] gi|257096687|sp|B1I393|PNP_DESAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169637941|gb|ACA59447.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C] Length = 741 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 18/242 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +RL GR +++R+IS+ V GS L + G T +L+ A +E++ + + Sbjct: 324 VRLDGRAFDEIRDISVEVNVLPRTHGSGLFQRGQTQVLSVLTLGAVRDEQILDGLDTQET 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y STG + R+ G + GRAL +V+ + I I Sbjct: 384 KRFMHHYNFPSFSTGEARPIRSAGRREIGHG----ALAGRALEAVLPGEDVFPYTIRIVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ +AL D ++ + + +G A+ + D Sbjct: 440 EVLSSNGSTSMASVCGSCLALMDAGVPIKAPVAGIAMGLIKEGDEVAV---------LTD 490 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G + +Q + A + + + A++ ++ K+ Sbjct: 491 IQGTEDHLGDMDFKVAGTEQG-VTALQMDIKIAGITPEILAQAMAQAREARLYILDRYKE 549 Query: 237 VI 238 VI Sbjct: 550 VI 551 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 84/225 (37%), Gaps = 26/225 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 R S+ V+ A L ++G+T +L AT L E + + + G +P Sbjct: 16 RTFSVDIGRVAGQASAGVLARYGETVVLVAATREALREGLDFFPLTVDYEERHYAVGRIP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ +KRE GR G ++ R+I R++R + + ++ + D Sbjct: 76 ---GSFMKRE---GRPGEKAILAARLIDRSIRPLFPRNFTQDVHVVALVMSVDQDCSPAI 129 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA VAL G V A+ GM+ G +V+ +D D+ Sbjct: 130 TAILGASVAL-------------TLSDIPFAGPVGAVIMGMVDGQLVVNPTLEQDEKSDL 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 T I V+ A+ S++ L A I + + Sbjct: 177 HLTVAGTREA-INMVEAGAKE--VSEEIIVEALTKAHAEIQRIAE 218 >gi|213513832|ref|NP_001134673.1| Exosome complex exonuclease MTR3 [Salmo salar] gi|209735138|gb|ACI68438.1| Exosome complex exonuclease MTR3 [Salmo salar] Length = 277 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 90/254 (35%), Gaps = 34/254 (13%) Query: 2 RLSGRQENQM--REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58 R+ GRQ Q+ R + + + A+GS ++ G+T L+ + + K G Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGR 95 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + + P S RE S QG +++ M+ +LR V L QI ++ V Sbjct: 96 LITDMRFAPFSC-----RERGSWIQGSDEKDLSLMLLESLRPGVCLQKYPRSQIEVNVMV 150 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ++ DG A+T A +AL D M D V S ++D Sbjct: 151 LENDGAVLAHAVTCASMALADAGIEMYDL-------------VLGCSIRQEGATYLIDPT 197 Query: 179 YGEDSTIDVD----------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 + E++ ++ + I +Q E +D + + Sbjct: 198 FLEENGCNLASGSRENLGSLTVAFLPSLNQISGLQSDGEMG---EDTLTGGVRTCIEGCF 254 Query: 229 DLIKLQKDVISNEV 242 L + + +S V Sbjct: 255 KLYPVIQQALSKAV 268 >gi|255022817|ref|ZP_05294803.1| ribonuclease PH [Listeria monocytogenes FSL J1-208] Length = 119 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 70/114 (61%), Gaps = 3/114 (2%) Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDVD 188 +TGA++A+ + +++ + +K +AA S G+L G ++DL+Y EDS VD Sbjct: 1 MTGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVD 58 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N +MT SG VE+QG+ E ATFS+ ++ L K I++LI++QK+ + ++V Sbjct: 59 MNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 112 >gi|57238127|ref|YP_179377.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni RM1221] gi|81353435|sp|Q5HTK8|PNP_CAMJR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|57166931|gb|AAW35710.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni RM1221] gi|315058687|gb|ADT73016.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni S3] Length = 719 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R IS+ + A GSCL G T L ATL + + +N Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL VD + I + Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + + A+ + Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 500 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G + +Q + Q+ L AK+ ++ + + Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559 Query: 236 DV 237 + Sbjct: 560 EA 561 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L T EEK +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 72 YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + G I++ + E +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D LNLA+ Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232 Query: 226 RI 227 I Sbjct: 233 AI 234 >gi|194333349|ref|YP_002015209.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris aestuarii DSM 271] gi|257096703|sp|B4S5G5|PNP_PROA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|194311167|gb|ACF45562.1| Polyribonucleotide nucleotidyltransferase [Prosthecochloris aestuarii DSM 271] Length = 734 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ +++R IS+ + A GS L G+T L T TL K + +T Sbjct: 334 RLDGRRLDEVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQMIDTLTDDADK 393 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R+ G + RA+R V + I I D Sbjct: 394 RFMLHYNFPPFSVGETGRVGGTSRREIGHG----NLAERAIRKVAPAESAFPYTIRIVSD 449 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +A D + + + + +G A+ + D+ Sbjct: 450 ILESNGSSSMASVCGGALAAMDGGVPLRKPVSGIAMGLIKEGDRYAV---------LSDI 500 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + L A ++ + Sbjct: 501 LGNEDHLGDMDFKVAGTADG-ITACQMDIKIDGLDYHILEQALEQALHGRLHILDKMNEA 559 Query: 238 ISNE 241 I Sbjct: 560 IQEP 563 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 82/226 (36%), Gaps = 22/226 (9%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGWITAEYGMLPRST 70 +S+ K A+GS +V+ DT +L T + P +Y + Sbjct: 17 LSIETGKMAKQADGSAIVRLNDTMVLATVVSSKTPPSPNQSFFPLQVEYREKYSAAGKFP 76 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I RALR + QIII VI +D A + Sbjct: 77 GGFFKRE---GRPSEKEILSARLIDRALRPLFPDGYYQDTQIIIS--VISSD-QINDADV 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 G A + + ++ + G + G IV+ + E D+D + Sbjct: 131 LGGVAA----------SAAIMVSDIPFQNSMSEVRVGRVNGEYIVNPNINELRDSDIDIS 180 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T++ I ++G E S+ + + I + LQ + Sbjct: 181 IGGTEN-TICMLEG--EMDEISEAEMLEAIRFGHEAIKKICALQNE 223 >gi|301063439|ref|ZP_07203971.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium NaphS2] gi|300442378|gb|EFK06611.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium NaphS2] Length = 697 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 R+ GR N++R I + GS L G+T + TL + + Sbjct: 312 RIDGRAFNEVRPIECLVGLLPRIHGSALFTRGETQAMVLTTLGTERDRQRIESIFGEELR 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G KR + GR R + RAL V+ I + + Sbjct: 372 SFILHYNFPPYSVGE-AKRLSGPGR---REIGHGALARRALLPVLPSEEDFQYCIRVVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 +++++G + A++ G ++L D +K VA ++ G++ + Sbjct: 428 ILESNGSSSMASVCGGCLSLMDAGV-------------PIKDLVAGVAMGLVAEGDNVVV 474 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L AK+ ++ Sbjct: 475 LTDILGDEDHYGDMDFKVTGTSEG-ITALQMDIKIERLTREIMEQALEQAKEGRLHILGC 533 Query: 234 QKDVISNE 241 K+ I+ Sbjct: 534 MKETIAQP 541 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 87/237 (36%), Gaps = 29/237 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R I + ++K A GS +V G+T +L TA + V +T EY + + Sbjct: 11 RNIHVETGRIAKQANGSVVVTSGETVVLVTAVATDDV---REGIDFLPLTVEYQEMSYAG 67 Query: 71 GN----RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +R+ GR G + I R+I R LR + + Q+I + Sbjct: 68 GQIPGNFFRRDM--GRPGEKETLISRLIDRPLRPLFPDNYHYETQVIATVLSTDKENEAD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL +G +A + G + G + + + + Sbjct: 126 MLAMLGASAAL-------------EISDIPFQGPIAGVKVGRIDGEFVANPTISQQE--E 170 Query: 187 VDAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D N V + IV V+G + S+ + I ++ +Q + + EV Sbjct: 171 SDINLIVAGNRDGIVMVEGGSR--FVSESDMIDAIFYGHQAIQPMLDVQ-ESLKKEV 224 >gi|291613953|ref|YP_003524110.1| polyribonucleotide nucleotidyltransferase [Sideroxydans lithotrophicus ES-1] gi|291584065|gb|ADE11723.1| polyribonucleotide nucleotidyltransferase [Sideroxydans lithotrophicus ES-1] Length = 709 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL ++ Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSVLFTRGETQALVVATLGSMRDSQTIDALQGEYSD 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RAL +V+ I + + Sbjct: 380 RFMLHYNFPPYSTGETGRVGTPKRREIGHG----RLAKRALVAVLPSEEECGYAIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G ++L D +K HVA I+ G++ Sbjct: 436 ITESNGSSSMASVCGGCLSLMDAGV-------------PVKTHVAGIAMGLIKDGGRFAV 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D +D G I +Q + +++ L+ AK+ ++ + Sbjct: 483 LTDILGDEDHLGDMDFKVAGSDKG-ITALQMDIKINGITKEIMQVALSQAKEGRLHILGI 541 Query: 234 QKDVISN 240 K + + Sbjct: 542 MKQAMPS 548 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 50/159 (31%), Gaps = 24/159 (15%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R LR + S QI+ + A+ Sbjct: 79 GGFFKRE---GRPSEKEILTSRLIDRPLRPLFPESFYNEVQIVATVMSSDPQIDSDIPAM 135 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL G + A G L G +++ E +D Sbjct: 136 IGASAALAISGI-------------PFDGPIGAARVGYLNGQYVLNPTKDELVESKMDLV 182 Query: 191 FVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLN 221 T ++ E Q +E F + A++N Sbjct: 183 VAGTAKAVLMVESEAQELSEDVMLGAVVFGHEQMQAVIN 221 >gi|225849804|ref|YP_002730038.1| polynucleotide phosphorylase/polyadenylase [Persephonella marina EX-H1] gi|257096700|sp|C0QTM3|PNP_PERMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225646061|gb|ACO04247.1| polyribonucleotide nucleotidyltransferase [Persephonella marina EX-H1] Length = 709 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTK 55 +R+ GR+ +++R I + + GS + G T TL + Sbjct: 317 VRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEEQIEESIEEGEE 376 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG A S R+ G + RA+ ++ I + Sbjct: 377 KKRFMLHYNFPPFSTGEARPPRAPSRREIGHG----NLAERAIEPLIPDEEEFPYVIRVV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++++++G T A + GA ++L D M K HVA I+ G+L Sbjct: 433 SEILESNGSTSMATVCGASLSLFDAGVPM-------------KKHVAGIAMGLLKEDDDY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 480 VILTDILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKIKGLSKEILQEALEQAKKARMHIL 538 Query: 232 KLQKDVISNE 241 L + Sbjct: 539 DLMYKAMPQP 548 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 89/237 (37%), Gaps = 32/237 (13%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67 IS+ K + G+ +V+ G+T + A + E+ + + T YG +P Sbjct: 20 PISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADIDFLPLTVDYREKTYAYGKIP 79 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G VKRE G+ R + R+I R +R + +II + AD Sbjct: 80 ---GGFVKRE---GKPTVREILVSRLIDRPIRPMFPKGFFND--VIITAMTLSADDKYDP 131 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA ALH +G VA + L G IV+ Y + + Sbjct: 132 DVLAIVGASAALHIT-------------EAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRS 178 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D+D T + + + A+L A + I L LQ++ + ++V Sbjct: 179 DIDIVVAGTKDA--IVMVEGGSEEVSEEVILDAIL-FAHEEIKKLCDLQEE-LRSKV 231 >gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum seropedicae SmR1] gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 712 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 96/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ V GS L G+T L ATL +E+ + Sbjct: 320 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDGLLGEYSD 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL + + + S + + + Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALIAALPAADEFSYSVRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + + +G+ A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G I +Q + +++ L AK+ ++ ++ Sbjct: 487 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALEQAKEGRHHILGKMQEA 545 Query: 238 I 238 + Sbjct: 546 V 546 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 +++L +++ A G+ +V DT +L T ++ + + T G +P Sbjct: 15 QVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYIEKTYAAGRIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE G+ + R+I R +R + L Q+II + + Sbjct: 75 ---GGFFKRE---GKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A G + G +++ + + + Sbjct: 129 PAMIGASAALSLAGI-------------PFNGPVGAARVGYIDGQYVLNPTTSQLKSSQL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T++ ++ +E S++ + D+ +I+ ++ + Sbjct: 176 DLVVAGTETAVLMV---ESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRD 225 >gi|254247654|ref|ZP_04940975.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia cenocepacia PC184] gi|124872430|gb|EAY64146.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia cenocepacia PC184] Length = 730 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 337 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 396 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 397 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 452 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 453 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 503 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 504 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 562 Query: 238 ISN 240 +S Sbjct: 563 VSG 565 Score = 68.6 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 74/232 (31%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L V++ A G+ +V DT +L T + + + T G + Sbjct: 32 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIA 91 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE R R+I R LR + Q++I + + Sbjct: 92 ---GGFFRREC---RPSEHETLTSRLIDRPLRPLFSEGFYNEVQVVIHVLSVNPEIPADI 145 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 146 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 192 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E S++ + +A D I +L++ Sbjct: 193 DLVVAGTERAVLMV---ESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVR 241 >gi|107023192|ref|YP_621519.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia AU 1054] gi|116690274|ref|YP_835897.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia HI2424] gi|123244852|sp|Q1BV09|PNP_BURCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470943|sp|A0K927|PNP_BURCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|105893381|gb|ABF76546.1| 3' exoribonuclease [Burkholderia cenocepacia AU 1054] gi|116648363|gb|ABK09004.1| 3' exoribonuclease [Burkholderia cenocepacia HI2424] Length = 715 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 76/232 (32%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L V++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E S++ + +A D I +L++ Sbjct: 178 DLVVAGTERAVLMV---ESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVR 226 >gi|118399581|ref|XP_001032115.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena thermophila] gi|89286453|gb|EAR84452.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena thermophila SB210] Length = 240 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 87/236 (36%), Gaps = 22/236 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R GR++N++R++ + EGSC + G T ++ R G++ Sbjct: 11 FREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPHN--KSTRRESEGFLN 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y + P S +R K + E + + SV+ LGS +I I VIQ Sbjct: 69 VQYNVAPFSGTDRRK----ISKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIVSVIQ 124 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG +++ +AL D M K + + L ++D Y Sbjct: 125 ADGSAKSSIFNAISLALMDAGIPM-------------KDFTVSSTVISLNSEILLDATYQ 171 Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 E + + S + ++ + + SQ M +A D + ++ + Sbjct: 172 EQKKASAELIISYLPRSDQVDFMEMKSSK--ISQQDTKEMCKIAVDGCKQMYQILR 225 >gi|170733613|ref|YP_001765560.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cenocepacia MC0-3] gi|226702627|sp|B1JVP5|PNP_BURCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169816855|gb|ACA91438.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia MC0-3] Length = 715 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL K I + G Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + +L+G+ A+ + D+ Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L AK+ ++ Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 547 Query: 238 ISN 240 +S Sbjct: 548 VSG 550 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 76/232 (32%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ L V++ A G+ +V DT +L T + + + T G +P Sbjct: 17 KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR R+I R LR + Q++I + + Sbjct: 77 ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A + +++ + + Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 D T+ ++ +E S++ + +A D I +L++ Sbjct: 178 DLVVAGTERAVLMV---ESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVR 226 >gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter thermophilus DSM 20745] gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter thermophilus DSM 20745] Length = 790 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 96/250 (38%), Gaps = 28/250 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR+ +++REI + V A GS + G T LT TL EE++ + + Sbjct: 326 RPDGRRPDEIREIWIETGVLPRAHGSAIFTRGQTQALTVVTLGTTSEEQLLDGLGIEESK 385 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R G + R+L +V+ + + + + Sbjct: 386 RYLHHYNFPPFSVGEVRRLRGPSRRDIGHG----ALAERSLLAVLPDEDVFPYTMRVVSE 441 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 ++ ++G T A++ G+ +AL D ++ VA ++ G++ Sbjct: 442 IVSSNGSTSMASVCGSSLALMDAGV-------------PIRAPVAGVAMGLITDPETGRY 488 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G I +Q + + + L A+ ++ Sbjct: 489 QILTDIQGIEDALGDMDFKVAGTAEG-ITGIQMDIKVMGITPEIMREALEQARRGRLYIL 547 Query: 232 KLQKDVISNE 241 V++ Sbjct: 548 DKMNAVLAQP 557 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 27/230 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66 R +++ A G+ V++GDT +LTT E E + + + G + Sbjct: 21 RRLTIETGRMAGLAHGAVTVRYGDTLVLTTVVGEREPREGLDFFPLTVDYEEKMYAAGKI 80 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+ R +R + Q+I + Sbjct: 81 P---GGFIKRE---GRPTEAAILAARLTDRPIRPLFPKGYKAEVQVITTVLSADQENAPD 134 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 +I GA AL G V A+ G + G +V+ + Sbjct: 135 VLSIIGASAAL-------------MLSPIPWAGPVGAVRIGDIDGELVVNPTEHQLIDSK 181 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ V+G A+ S+D F + LA D I ++ +Q + Sbjct: 182 LDMVVAGTADA-VMMVEGEADE--ISEDRFLEAVLLAHDEIKRIVAMQHE 228 >gi|312129691|ref|YP_003997031.1| polyribonucleotide nucleotidyltransferase [Leadbetterella byssophila DSM 17132] gi|311906237|gb|ADQ16678.1| polyribonucleotide nucleotidyltransferase [Leadbetterella byssophila DSM 17132] Length = 718 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 93/250 (37%), Gaps = 28/250 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR+ ++R I++ A GS L G+T L+T TL K+ I + + Sbjct: 317 RLDGRKLTEIRPITVEVDYLPSAHGSALFTRGETQSLSTTTLGTKLDEQIVDLPMVKGYS 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y STG V R+ G + R+L V+ I + D Sbjct: 377 KFYLHYNFPGFSTGEVRPNRGVGRREIGHG----NLAQRSLERVMPPEEENPYTIRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + ++L D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGCLSLMDAGV-------------PIKAPVSGIAMGLITDPSTGKW 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G IV Q + S D LN A++ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTAQG-IVACQMDIKIGGLSFDIIEKALNQAREGRLHIL 538 Query: 232 KLQKDVISNE 241 +V+ Sbjct: 539 GKMTEVLEKP 548 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 I+L + A+G+ +++ G +L T T +E + + A G +P Sbjct: 17 ITLETGKLARQADGAVVLRSGKLMMLATVCAAKTHKEGTDFLPLSVDYQEKFASNGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE G+ I R+I RALR + Q+++ AD + Sbjct: 76 --GSFQRRE---GKLSDNEILISRLIDRALRPIFPEDFHAEVQVMVTLH--SADENIQ-- 126 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 D L + + G ++ + + G +++ D+D Sbjct: 127 ---------PDALAALAASAAIMASDIPFNGPISEVRVAKINGEYVINPPVQAIGNADLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T S I+ V+G E S+ L A + I + QK+ Sbjct: 178 LIVAGT-SDSIIMVEG--ESNEVSEIEMVEALRAAHEVIKLQVAAQKE 222 >gi|226227170|ref|YP_002761276.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca T-27] gi|257096690|sp|C1A3Y1|PNP_GEMAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226090361|dbj|BAH38806.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca T-27] Length = 732 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 20/245 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGW 58 +R+ GR+++++R IS+ V A GS L G T L ATL + + G Sbjct: 309 LRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQRLDSIKEPGE 368 Query: 59 IT----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 +T Y P STG S R+ G + RAL+ V+ A I I Sbjct: 369 VTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHG----NLAERALQGVLPDFADFPYTIRI 424 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 DV++++G + A++ G ++L D ++ + + +G AI + Sbjct: 425 VSDVLESNGSSSMASVCGGSLSLFDAGVPLKAAVAGVAMGLIKEGERYAI---------L 475 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D T G I +Q + L+ AK ++ Sbjct: 476 TDILGTEDHLGDMDFKVAGTKDG-ITSIQMDIKIEGLDIKIMEEALSQAKAGRLHILGEM 534 Query: 235 KDVIS 239 ++ Sbjct: 535 DKALA 539 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 26/233 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67 R + + K A GS +V+FG+T +L T+ E +P + ++ T G +P Sbjct: 11 RPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENQSPLPFFPLTVEYKEKTYAAGKIP 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+I R++R + Q+ I + Sbjct: 71 ---GGFIKRE---GRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQENDADV 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ A AL+ G +A + G + G+ +++ + + D+ Sbjct: 125 LALVAASFALN-------------ASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDL 171 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + V IV V+G + S++ L L+ D I +LI +Q+++++ Sbjct: 172 EL-VVAGSKDSIVMVEGGSLE--VSEEDVLESLRLSHDGIRELIGMQEELLAK 221 >gi|15834850|ref|NP_296609.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum Nigg] gi|270285016|ref|ZP_06194410.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum Nigg] gi|270289041|ref|ZP_06195343.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum Weiss] gi|301336414|ref|ZP_07224616.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum MopnTet14] gi|81548983|sp|Q9PL77|PNP_CHLMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|7190270|gb|AAF39102.1| polyribonucleotide nucleotidyltransferase [Chlamydia muridarum Nigg] Length = 693 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R+ GR ++R IS+ GSCL G+T + T E + + Sbjct: 313 IRVDGRSTTEIRPISIEVSFLPRTHGSCLFTRGETQSVAVCTLGGESMAQRFEDLNGDGA 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL V+ ++ + ++ Sbjct: 373 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPEASRFPYTVRVES 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A++ G ++L D +K VA I+ G++ Sbjct: 429 NITESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLILDQDKAI 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I Q + + + L AK + ++ Sbjct: 476 VLSDISGIEDHLGDMDFKVAGTEEG-ITAFQMDIKVEGITHEIMEQALAQAKQGRSHILN 534 Query: 233 LQKDVISNE 241 L V+S+ Sbjct: 535 LMTQVMSSP 543 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 85/235 (36%), Gaps = 33/235 (14%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ LVK +T + A+L E V + ++ +++G Sbjct: 18 FETGKIARQANGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGKTSG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR + I R+I R+LR + Q++ DG T A Sbjct: 75 GFLKRE---GRPSEKEILISRLIDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I GA AL VA + G++ G +V+ E +D Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVEGKWVVNPTKDELDASKLDL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241 T S ++ ++G +++ + + IA + I+ + I E Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQKYIAKICDAIEAWQKAIGKE 228 >gi|305431698|ref|ZP_07400867.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20] gi|304445293|gb|EFM37937.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20] Length = 738 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 90/247 (36%), Gaps = 22/247 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R I++ + A GSCL G T L ATL + + +N Sbjct: 355 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPI 414 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y S G +A R+ G + RAL +D + I + Sbjct: 415 NERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSIDEN--YPYIIRLV 468 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + +G AI + Sbjct: 469 SEILESNGSSSMATVCGGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAI---------LT 519 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G I +Q + Q L AK+ ++ + + Sbjct: 520 DIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGIDQKILKEALYQAKEGRIHILNIME 578 Query: 236 DVISNEV 242 + + V Sbjct: 579 EALKEIV 585 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 84/242 (34%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L EEK +T +Y G +P G Sbjct: 38 VAKQAAGAVLMRQGKSVVLAAVAREEK----PVEEDFLPLTVQYIEKAYAAGKIP---GG 90 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 91 YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPQVDLQVMSL 145 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + +++ + E +D Sbjct: 146 NAASVALYLSDIPM-------------KAPVCGVRIGRIEEKFVLNPNNEELKNSTLDL- 191 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D L+LA+ Sbjct: 192 YVAGVKDELLMIEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQK 251 Query: 226 RI 227 I Sbjct: 252 AI 253 >gi|262197030|ref|YP_003268239.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM 14365] gi|262080377|gb|ACY16346.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM 14365] Length = 711 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 94/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR +++R IS + A GS L G+T L +AT+ + +T G + Sbjct: 321 RIDGRAYDEIRAISCEVGILPSAHGSALFTRGETQALVSATMGTRYDEQKLDTLLGGMQK 380 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + S R+ G + R++ V+ + + + Sbjct: 381 PFFLHYNFPPFCTGEAKPIRSTSRRELGHG----NLAERSIAQVMPEREDFPYTVRVVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ GA ++L D + + +++G AI + D+ Sbjct: 437 ILESNGSSSMASVCGASLSLMDAGVPVLSPVAGIAMGLMMEGERYAI---------LSDI 487 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + ++D L A+ ++ + Sbjct: 488 LGDEDHMGDMDFKVTGTARG-VCALQMDIKLKGLTRDILVEALEQARRGRMHILDKMAEA 546 Query: 238 I 238 + Sbjct: 547 L 547 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 83/237 (35%), Gaps = 30/237 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 EI + +K A GS +V+ GDT +L TAT K P +T EY S G Sbjct: 14 EIIIETGKWAKQASGSVVVRCGDTMVLVTATA-SKSPR--VGMDFLPLTCEYQEKTYSAG 70 Query: 72 N----RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 +REA R + R++ R R + Q+I + Sbjct: 71 KIPGNFFRREA---RPSTDEVLVARLMDRPSRPLFPKLWRCETQLIANVVSFDQSNAADV 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TG+ ALH G VAA+ G + G + + E D+ Sbjct: 128 LAMTGSSCALH-------------ISDIPWDGPVAAVRVGRVAGEFVAFPTFEEREQSDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241 D V IV V+G + L A + + LI LQ + + E Sbjct: 175 DM-IVSASRDAIVMVEGGMREVP--EQVLIDALLFAHEAVQPLIDLQEKLRAAVGKE 228 >gi|315124713|ref|YP_004066717.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018435|gb|ADT66528.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 719 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R I++ + A GSCL G T L ATL + + +N Sbjct: 336 RADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL VD + I + Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + + A+ + Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 500 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G + +Q + Q+ L AK+ ++ + + Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559 Query: 236 DV 237 + Sbjct: 560 EA 561 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L T EEK +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 72 YVKRET---KPSDAETLTARIIDRSLRPLFRKGYAYPTQIVV--MVLSADPKVDLQVMSL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + G I++ + E +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D LNLA+ Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232 Query: 226 RI 227 I Sbjct: 233 AI 234 >gi|86150855|ref|ZP_01069071.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 260.94] gi|85842025|gb|EAQ59271.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 260.94] Length = 719 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R I++ + A GSCL G T L ATL + + +N Sbjct: 336 RADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL VD + I + Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + + A+ + Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 500 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G + +Q + Q+ L AK+ ++ + + Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559 Query: 236 DV 237 + Sbjct: 560 EA 561 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L T EEK +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 72 YVKRET---KPSDAETLTARIIDRSLRPLFRKGYAYPTQIVV--MVLSADPKVDLQVMSL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + G I++ + E +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D LNLA+ Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232 Query: 226 RI 227 I Sbjct: 233 AI 234 >gi|255513310|gb|EET89576.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 258 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 21/231 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 R R R++ ++R V +AEGS G T +L ++E V + G + Sbjct: 21 REDSRGSMDFRDLKISRGVIDHAEGSAQADLGATKVLAGVKLVQEDV--YEDTPDQGNLV 78 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL-----GSRQII 113 +LP + E +G + E+ R++ RA+R+ +DL +L + + Sbjct: 79 VSAELLPLAAA-----EYETGPPSPEAIELGRVVDRAIRAGNCIDLKSLLLEEGKAWTVY 133 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN----KFQLSQVLKGHVAAISCGML 169 +D V+ DG A++ A A+ D K + + V++ + + Sbjct: 134 VDVYVLNFDGNLFDASVIAAMSAILDARVPEYADGKADYTKREKKLKVDNVVSSTTFAKI 193 Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 ++D E+ +D TD I +Q +FS + +++ Sbjct: 194 GKAILLDPTGNEELGMDARLTIS-TDGKMIRAMQK-GLAGSFSVEEIESLI 242 >gi|152991076|ref|YP_001356798.1| polynucleotide phosphorylase/polyadenylase [Nitratiruptor sp. SB155-2] gi|187610315|sp|A6Q4N2|PNP_NITSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151422937|dbj|BAF70441.1| polyribonucleotide nucleotidyltransferase [Nitratiruptor sp. SB155-2] Length = 732 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR +R I + + A GSCL G+T L T+ EK + + + Sbjct: 345 RADGRGLKDVRPIDIKTNILPSAHGSCLFTRGETQALVVCTIGEKTDAQMYEMLTSKGPE 404 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P S G A R+ G + RAL VVD+ + + Sbjct: 405 YEHFMVHYNFPPFSVGEAKPISAPGRRELGHG----NLARRALEPVVDVPE--DKTYRLV 458 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + D + +++ AI + Sbjct: 459 SEILESNGSSSMATVCGGALALKAANIDLADLVAGVAMGLIVEDDKYAI---------LT 509 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G + +Q + Q+ L A++ ++K+ + Sbjct: 510 DIMGLEDHDGDMDFKVAGTHDG-VTAMQMDIKLGGVQQEILEQALQQAREARLHILKIME 568 Query: 236 DV 237 + Sbjct: 569 EA 570 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 25/191 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75 V+K GS L+K G T +L T +E++ + + +T +Y + G VK Sbjct: 21 VAKQTNGSVLLKSGKTVMLATVVMEKE----MVDEDFLPLTVQYIEKSYAAGKIPGGFVK 76 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE + G R++ RALR + L I + V+ AD Sbjct: 77 REQ---KPGDFETLTARIVDRALRPLFPKGYLYPTVITV--MVLSAD-----------PE 120 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 + L + F ++ V+ + + G + + + +D T Sbjct: 121 SDLQVLALNAASAALFVSDIPVRKAVSGLRVAKVDGEVLFNPPLSKLKESTLDLYLAGTK 180 Query: 196 SGHIVEVQGSA 206 ++ ++ +A Sbjct: 181 E-ELLMIEMAA 190 >gi|88658296|ref|YP_507529.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia chaffeensis str. Arkansas] gi|123493143|sp|Q2GGA4|PNP_EHRCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88599753|gb|ABD45222.1| polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis str. Arkansas] Length = 796 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 89/245 (36%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +++R+I + V A GS L G+T L L + + Sbjct: 319 RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P + G A G R ++ RA+R V+ + I + + Sbjct: 379 NFLLHYNFPPYAVGE----SAALRAPGRREIGHGKLAWRAIRYVLPEKSDFPYTIRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + ++DG + A + GA +AL D +K VA I+ G++ Sbjct: 435 ITESDGSSSMATVCGASLALMDTGV-------------PIKSPVAGIAMGLIKEDDRFII 481 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + D L AKD ++ Sbjct: 482 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDMKISGIDIDIIEKALLQAKDGRMHILSK 540 Query: 234 QKDVI 238 VI Sbjct: 541 MNAVI 545 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 31/224 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 +++ A G+ +V + T +L T +E V + + G +P G +KR Sbjct: 23 IARQASGAVMVSYAGTTVLATVVTGKTKEPVDFLPLTVQFVAKSYAVGKIP---GGFLKR 79 Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGAW 134 E G+ R I R+I R++R + I I C+++ D T A+ GA Sbjct: 80 E---GKPSDRETLISRLIDRSIRPLFPAGFYDE--ISIVCNLLSYDTVTPPEVTALVGAT 134 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFV 192 AL G V G L G +++ E +D F+ Sbjct: 135 AALS-------------ISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDL-FL 180 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ++ V +E + S+ + ++I L K+ Sbjct: 181 SGNEDSVLMV--ESEASELSESQMLGAITFGHQHCQEVINLIKE 222 >gi|78222801|ref|YP_384548.1| polynucleotide phosphorylase/polyadenylase [Geobacter metallireducens GS-15] gi|123729281|sp|Q39VA1|PNP_GEOMG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78194056|gb|ABB31823.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Geobacter metallireducens GS-15] Length = 697 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I+ + GS L G+T L ATL ++ +G Sbjct: 313 RIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVAATLGTSSDEQRIDSLYGESRK 372 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R A R+ G + RAL V+ I I D Sbjct: 373 RFMLHYNFPPFSVGETSFRLAPGRREIGHGY----LAERALERVLPKHDDFPYTIRIVSD 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++++G + A++ G +++ D + VA I+ G++ Sbjct: 429 ILESNGSSSMASVCGGALSMMDAGV-------------PISAPVAGIAMGLIKEGDDIAI 475 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ L AK+ ++ Sbjct: 476 LSDILGDEDHLGDMDFKVAGTSTG-VTAIQMDIKITGVTREIMGKALEQAKEGRLHILGK 534 Query: 234 QKDVIS 239 + ++ Sbjct: 535 MAEALA 540 Score = 78.2 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 75/230 (32%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A G+ +V G+T +L TA + +E + + G + Sbjct: 13 RTITIATGKMAKQASGAVMVSCGETMVLVTAVALKSAKEGQDFFPLTVNYQEKAYAGGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R I R +R + + L QI+ D Sbjct: 73 P---GGFFKRE---GRPTENETLTCRFIDRPIRPLFPENFLNDTQIMATVVSADQDNDPG 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G +A + G + G I + E Sbjct: 127 ILAMIGASAAL-------------EVSDIPFFGPIAGVKVGRVDGKFICNPT-AEQLAAS 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V ++ V+G A A S+ + + +I Q + Sbjct: 173 DLEVVVAASRDAVIMVEGGA--AEISEADLLEAIFFGHASVQPIIDAQIE 220 >gi|57168155|ref|ZP_00367294.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter coli RM2228] gi|57020529|gb|EAL57198.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter coli RM2228] Length = 719 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 90/247 (36%), Gaps = 22/247 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R I++ + A GSCL G T L ATL + + +N Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPI 395 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y S G +A R+ G + RAL +D + I + Sbjct: 396 NERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSIDEN--YPYIIRLV 449 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + +G AI + Sbjct: 450 SEILESNGSSSMATVCGGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAI---------LT 500 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G I +Q + Q L AK+ ++ + + Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGIDQKILKEALYQAKEGRIHILNIME 559 Query: 236 DVISNEV 242 + + V Sbjct: 560 EALKEIV 566 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 84/242 (34%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L EEK +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRQGKSVVLAAVAREEK----PVEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 72 YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPQVDLQVMSL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + +++ + E +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGRIEEKFVLNPNNEELKNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D L+LA+ Sbjct: 173 YVAGVKDELLMIEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQK 232 Query: 226 RI 227 I Sbjct: 233 AI 234 >gi|257096723|sp|B3DZ86|PNP_METI4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 707 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 32/236 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 I K+A+GS V +G+T +L TA L+E ++ A G P Sbjct: 14 IVFETGKLAKFADGSVTVSYGETAVLVTAVSVTELKEDQDFLPLQVEYREKAAAAGRFP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 G ++E GR + RMI R LR + QI+ ++ ADG Sbjct: 73 --GGYFRKE---GRPTDKEILTSRMIDRPLRPLFPKGYFYETQIL--GTLLSADGQNDPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA AL G V A+ G + G I++ + E D Sbjct: 126 VMAINGASAAL-------------MVSDIPFYGPVGAVRIGQIDGRWIINPTHREREISD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D +V ++ + + ++GSA F ++ F L A + ++I QK+ ++ +V Sbjct: 173 IDLVYVGSEH-YPLMIEGSARE--FPEEEFVKALEFAHQHVQEVIAAQKE-LAEKV 224 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 89/253 (35%), Gaps = 33/253 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR +R I++ V + GS L G+T L ATL +++ + + Sbjct: 313 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQS 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + S R+ G + R+L V+ I + Sbjct: 373 KRFLLHYFFPPFSVGEVGRITGQSRREIGHG----ALAERSLLPVIPSETDFPYAIRVSS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 ++++++G T A + G +AL D LK VA IS G++ G Sbjct: 429 EILESNGSTSMATVCGGSLALMDAGV-------------PLKTSVAGISVGLVKGKEEDF 475 Query: 172 -----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I Q + D + ++ Sbjct: 476 DWSRYCLLTDILGLEDHYGDMDFKIAGTRKG-ITGFQLDLKLRGIPLDVMAKAIFQSQKA 534 Query: 227 IADLIKLQKDVIS 239 ++ VI+ Sbjct: 535 RMVILDCMDKVIN 547 >gi|212639515|ref|YP_002316035.1| polynucleotide phosphorylase/polyadenylase [Anoxybacillus flavithermus WK1] gi|226702595|sp|B7GG69|PNP_ANOFW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|212560995|gb|ACJ34050.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Anoxybacillus flavithermus WK1] Length = 702 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRKVDEIRPLSSAVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGIEET 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G G R + RAL V+ I + Sbjct: 375 KRFMHHYNFPPFSVGE----TGAMRGPGRREIGHGALGERALEPVIPSEKEFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G + +Q + S++ L A+ +++K Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTEKG-VTALQMDIKIKGLSREILEEALQQARKGRLEILK 536 Query: 233 LQKDVISNE 241 IS Sbjct: 537 HMMQTISEP 545 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 26/229 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RPLTVEIGELAKQANGAVLVRYGDTVVLSTATASKEPKSVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + D+ Sbjct: 129 AAMFGSSLAL-------------TISDIPFEGPIAGVTVGRVDGKFVINPSVAQMEQSDM 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T I V+ A ++ + + I LI Q+D Sbjct: 176 HLVVAGTKDA-INMVEAGANEVP--EEVMLEAIMFGHEEIKRLIAFQED 221 >gi|217077873|ref|YP_002335591.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus TCF52B] gi|257096711|sp|B7IE23|PNP_THEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217037728|gb|ACJ76250.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus TCF52B] Length = 697 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKH 56 +R GR+ +++R I+ V GS L G+T + A +EE++ I Sbjct: 320 IRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEGT 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL++VV + + Sbjct: 380 KRFILHYNFPPFSVGEVKPLRGPGRREIGHGH----LAERALKAVVPSEEEFPYVVRVVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 ++++++G + A + +AL D ++ HVA ++ G++ Sbjct: 436 EILESNGSSSMATVCSGSLALMDAGV-------------PIRTHVAGVAMGLIIEDGQEV 482 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + A ++ L AK+ ++ Sbjct: 483 VLTDIQGLEDHWGDMDFKVAGTRNG-ITAFQMDCKVAGVGEELLKRALQQAKEARMKILD 541 Query: 233 LQKDVISNE 241 + + I Sbjct: 542 IMFNTIEKP 550 Score = 94.0 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 37/239 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 R++ + V+K + GS V+FGD+ +L TA + + I +T EY Sbjct: 13 RKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISD---RTIEGVDFVPLTVEYQEKFYAA 69 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G +KRE G+ + R+I R +R + Q+I+ V+ DG Sbjct: 70 GKIP---GGFIKRE---GKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVT--VLSVDG 121 Query: 124 GT--RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 T I A +AL+ +G VA + G + G +V + Sbjct: 122 NTPPDVTGIIAASLALN-------------ISKIPFEGIVAGVRLGYVDGKFVVFPTEEQ 168 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D V I V+G A+ +++ L +A D I +I+ +++++S Sbjct: 169 LEKSRLDI-VVAGSKDAITMVEGEAKE--VTEEEMVNALMVAHDAIKQIIEFEEEILSQ 224 >gi|294101702|ref|YP_003553560.1| polyribonucleotide nucleotidyltransferase [Aminobacterium colombiense DSM 12261] gi|293616682|gb|ADE56836.1| polyribonucleotide nucleotidyltransferase [Aminobacterium colombiense DSM 12261] Length = 748 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 97/251 (38%), Gaps = 30/251 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTK- 55 R GR +++R I+ V GS L G+T L AT +++++ ++ + Sbjct: 312 RADGRAMDEIRPITCEVGVLPRVHGSALFTRGETQALVVATLGMMGVDDQILDGLKQDEP 371 Query: 56 HGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y P S G R R G R + RALR ++ + + Sbjct: 372 NKRFILHYNFPPYSVGEVRPMRG-----PGRREIGHGALAERALRPIIPDEVEFPYVVRL 426 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 D+++++G + A+I G +AL + + HVA I+ G++ Sbjct: 427 VSDILESNGSSSQASICGGSLALMN-------------SGVPINRHVAGIAMGLIKEGEK 473 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G + +Q + +++ LN AK+ + Sbjct: 474 VEILSDIQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITREVLKKALNQAKEGRLFI 532 Query: 231 IKLQKDVISNE 241 ++ + I Sbjct: 533 LEKMESAIEEP 543 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 33/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 E++ V+K A GS + + GDT +LTT T + + G +P Sbjct: 13 EMTFETGCVAKQANGSIVARSGDTVVLTTTCISDTPRTGIDFFPLLVDFEERYYSAGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G +KRE GR + R+I R++RS+ D + I + V+ D Sbjct: 73 ---GGFIKRE---GRPTENAILSARVIDRSIRSLFDENLRYD--IHVVATVLSVDQLNPP 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI A VAL G + A+ G + +V+ E+ + Sbjct: 125 SVLAINAASVAL-------------MISEIPWGGPIGAVRIGYINDQLVVNP--LEEQML 169 Query: 186 DVDAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + + V I V+ A S++ L+LA I ++ +Q++ Sbjct: 170 ESKLDLLVSGHKDGITMVEAGANE--VSEELLVDALDLAHTEIKKIVAMQEE 219 >gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum DSM 5159] gi|257096714|sp|B9KYR9|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum DSM 5159] Length = 790 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 16/241 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRN--TKHG 57 R GR+ +++REI + + GS L G T +L T +E+ + Sbjct: 325 RPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVCTLGTKEEEQFLDSLGIEETK 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + S R G + RAL +V+ + + + Sbjct: 385 RYMHHYNFPPFSTGEIRRLRGPSRRDIGHG----ALAERALLAVLPSEDEFPYTMRLVSE 440 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D + + G V + G + D+ Sbjct: 441 VLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAM-----GLVTDQTTGRY--TILTDI 493 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED+ D+D T G I +Q + + + L A+ ++ +V Sbjct: 494 QGIEDALGDMDFKVAGTRDG-ITAIQMDIKVMGITPEIMRDALEQARRGRLFILDKMSEV 552 Query: 238 I 238 I Sbjct: 553 I 553 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 88/237 (37%), Gaps = 29/237 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66 R +++ V++ A+G+ LV++G+T +LTT E + + ++ G + Sbjct: 15 RLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFPLTVEYEEKMYAAGKI 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +RE G+ + R+ R +R + Q+I + Sbjct: 75 P---GGFFRRE---GKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLSADQENEPD 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 +I GA AL G V A+ G L G +++ + Sbjct: 129 VLSIIGASAAL-------------TLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESR 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--VISNE 241 +D T I+ V+G A S+D F + A I ++ +Q + ++ + Sbjct: 176 MDIVVAGTADA-ILMVEGQANE--ISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGK 229 >gi|167754065|ref|ZP_02426192.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216] gi|167658690|gb|EDS02820.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216] Length = 737 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ +++R I A GS + G+T LTT TL +EKV + Sbjct: 324 RLDGRRTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKMDEKVKDEVLVQGTE 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG +S R+ G + RAL+ +V + + + D Sbjct: 384 QFVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMVPVGEENPYAVRVVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A + +AL D ++ + + G ++ + G + D+ Sbjct: 440 ILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAM-----GLISDSATGRWA--VLSDI 492 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + S + L A+ ++ + Sbjct: 493 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEVLAKALEQARVGRMHILGKLTEC 551 Query: 238 ISNE 241 I+ Sbjct: 552 IAEP 555 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 28/236 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 REI + K A+GS +VK GDT LL T + ++ A G Sbjct: 20 REIMIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKEKYAACGRY 79 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ + R+I RALR + ++ + ++I AD + Sbjct: 80 P---GGFMKRE---GKANDSEILVARLIDRALRPLFPSD--YHAEVYVTVNLISADKDIQ 131 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D L + + G ++ + + G +++ + + D Sbjct: 132 -----------PDALAGLAASAALAVSDIPFGGPISEVRVARIGGQYVINPAFSQMQDAD 180 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D V +I+ V+G E S++ + A + I +Q + +S E+ Sbjct: 181 LDI-MVGGTIDNILMVEG--EMKEVSEEVMLGAIKFAHEEIKKHCAVQIE-LSKEL 232 >gi|299823025|ref|ZP_07054911.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM 20601] gi|299816554|gb|EFI83792.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM 20601] Length = 722 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATL--EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L T E ++ + ++ Sbjct: 317 IRPDGRKVNEIRPLSSETGLLPRVHGSGLFTRGQTQALSICTLAPLREHQIIDGLGTEEY 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 377 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICGSTLAMMDAGV-------------PIKAPVAGIAMGLVKLGDDYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 480 ILTDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILHEALEQAKEGRLHILE 538 Query: 233 LQKDVISNE 241 I+ Sbjct: 539 HLNATIAGP 547 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 26/230 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68 ++S+ ++K A G+ LV++GDT +LT A + + G +P Sbjct: 16 KLSIEVGQLAKQASGAALVRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR ++ R+I R +R + QI + D A Sbjct: 75 --GGFLKRE---GRPSDKATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMA 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL G +A + G++ G +++ + D++ Sbjct: 130 AMLGSSIALC-------------ISDIPFDGPIAGVDVGLIDGKYVINPTPEQFEKSDIN 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A+ S++ + + I L K Q++++ Sbjct: 177 LTVAGTYEA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCKFQEEIV 223 >gi|205356272|ref|ZP_03223038.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345877|gb|EDZ32514.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CG8421] Length = 719 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R IS+ + A GSCL G T L ATL + + +N Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPI 395 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL VD + I + Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + + A+ + Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 500 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G + +Q + Q+ L AK+ ++ + + Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIME 559 Query: 236 DV 237 + Sbjct: 560 EA 561 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 85/242 (35%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L T EEK +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + + Sbjct: 72 YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMGL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + G I++ + E +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D LNLA+ Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232 Query: 226 RI 227 I Sbjct: 233 AI 234 >gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72] gi|187470932|sp|A1K7B5|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72] Length = 699 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L ATL I + G Sbjct: 316 RIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIAGEYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RAL +++ S I + + Sbjct: 376 RFMLHYNFPPFSTGETGRFGVTKRREIGHG----RLAKRALVAMLPKGEDFSYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D M K HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGGSLALMDAGVPM-------------KDHVAGIAMGLIKDGNRFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G + +Q + +++ L A + ++K Sbjct: 479 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAGEGRLHILKQ 537 Query: 234 QKDVIS 239 KD + Sbjct: 538 MKDALG 543 Score = 69.0 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +V DT +L T + + + G +P Sbjct: 16 VTLETGEVARQAGGAVIVNVDDTVVLATVVAAKDAKPGQDFFPLTVDYVEKFYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + Q+I+ + + Sbjct: 75 --GGFFKRE---GRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVTVLSLNPEVDADIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST---- 184 A+ A AL G + A G G +++ + T Sbjct: 130 AMIAASAALSISGI-------------PFDGPIGAARVGYADGQYLLNPTVEQLKTSKLN 176 Query: 185 ---IDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + +M +++ + E F + A +N I +L+++ Sbjct: 177 LVVAGTASAVLMVESEADELSEQVMLG-AVVFGHEQMQAAIN----AINELVEV 225 >gi|86150580|ref|ZP_01068803.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596155|ref|ZP_01099392.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|218562865|ref|YP_002344644.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|123042773|sp|Q0P903|PNP_CAMJE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|85838931|gb|EAQ56197.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190996|gb|EAQ94968.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|112360571|emb|CAL35368.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926478|gb|ADC28830.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni IA3902] gi|315927122|gb|EFV06473.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929391|gb|EFV08594.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 719 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R IS+ + A GSCL G T L ATL + + +N Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPI 395 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL VD + I + Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + + A+ + Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 500 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G + +Q + Q+ L AK+ ++ + + Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIME 559 Query: 236 DV 237 + Sbjct: 560 EA 561 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L T EEK +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 72 YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + G I++ + E +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D LNLA+ Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232 Query: 226 RI 227 I Sbjct: 233 AI 234 >gi|289578380|ref|YP_003477007.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter italicus Ab9] gi|289528093|gb|ADD02445.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter italicus Ab9] Length = 700 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R+ GR + +R I V GS + G T +LT AT + ++ I + + Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL V+ I + Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ +AL D ++ + + +G V ++ + D Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + ++ L A+ ++ + Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLE 537 Query: 237 VISNE 241 VI Sbjct: 538 VIKEP 542 Score = 88.2 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 27/223 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + V++ A G+ VK+GDT +L TA E + + ++ G + Sbjct: 13 RKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + QII + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDVQPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL G A++ G++ G +++ ++ + Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSL 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 + T IV V+ A+ ++ + A + I Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEVP--EETMLEAIMYAHEYIKQ 213 >gi|225452398|ref|XP_002273777.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 997 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 86/240 (35%), Gaps = 11/240 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR N++R + GS L GDT +L T TL ++ G Sbjct: 368 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 427 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + I+ Sbjct: 428 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEEEFPYTVRINS 483 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ +DG T A + G +AL D + + + L V + + + D Sbjct: 484 EVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVG--LVTEVDPSTNTIKDYRILTD 541 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + A D L A ++ + Sbjct: 542 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRMEQ 600 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 34/221 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R I+ ++++A G+ ++ +T +L+T +T +Y + Sbjct: 67 RSITFETGKIARFANGAVVMSMDETKVLSTV----ASSKGDAARDFLPLTVDYQEKHFAQ 122 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124 G ++RE R R+I R +R + Q++ V+ +DG Sbjct: 123 GVIPTTFMRREGAPR---ERELLCGRLIDRPIRPLFPAGFYHEVQVMAS--VLSSDGKQD 177 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A AL G + I G +CG IV+ E S Sbjct: 178 PDVMAANATSAAL-------------MLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSL 224 Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAK 224 D++ + T + ++VQ S+ A L LA Sbjct: 225 SDLNLVYACTRDKTLMIDVQA----REISEKDLEAALRLAH 261 >gi|297544656|ref|YP_003676958.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842431|gb|ADH60947.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 700 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R+ GR + +R I V GS + G T +LT AT + ++ I + + Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL V+ I + Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ +AL D ++ + + +G V ++ + D Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + ++ L A+ ++ + Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLE 537 Query: 237 VISNE 241 VI Sbjct: 538 VIKEP 542 Score = 92.8 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 91/234 (38%), Gaps = 27/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + V++ A G+ VK+GDT +L TA E + + ++ G + Sbjct: 13 RKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + QII + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDVQPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL G A++ G++ G +++ ++ + Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSL 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T IV V+ A+ ++ + A + I +++ ++++ Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEVP--EETMLEAIMYAHEYIKQIVEFIEEIVKE 224 >gi|283956649|ref|ZP_06374128.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 1336] gi|283791898|gb|EFC30688.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 1336] Length = 719 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R IS+ + A GSCL G T L ATL + + +N Sbjct: 336 RADGRSLNEVRPISIETNLLPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL +D + I + Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSIDEN--YPYVIRLV 449 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + A+ + Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDSKFAV---------LT 500 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G + +Q + Q+ L AK+ ++ + + Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559 Query: 236 DV 237 + Sbjct: 560 EA 561 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L T EEK +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 72 YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + G I++ + E +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D LNLA+ Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232 Query: 226 RI 227 I Sbjct: 233 AI 234 >gi|326528505|dbj|BAJ93434.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 726 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 88/244 (36%), Gaps = 11/244 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR+ +++R + GS L GDT +L T TL ++ G Sbjct: 112 LRVDGRRLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 171 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + ++ Sbjct: 172 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPEGDFPYTVRVNS 227 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ +DG T A++ G +AL D + + + V + + D Sbjct: 228 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEADPTTGDISSY--RILTD 285 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + A D L A+ ++ Sbjct: 286 ILGLEDHLGDMDFKIAGTRRG-ITAIQLDIKPAGIPLDIVCESLEPARKARNQILDRMDQ 344 Query: 237 VISN 240 IS Sbjct: 345 EIST 348 >gi|193214790|ref|YP_001995989.1| polynucleotide phosphorylase/polyadenylase [Chloroherpeton thalassium ATCC 35110] gi|226702635|sp|B3QY14|PNP_CHLT3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193088267|gb|ACF13542.1| Polyribonucleotide nucleotidyltransferase [Chloroherpeton thalassium ATCC 35110] Length = 729 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ +++R IS+ + A GS L G+T L T TL K + +T Sbjct: 332 RLDGRRLDEIRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQLTDTLFDDADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + +VS R+ G + RA++ VV + + D Sbjct: 392 RFMLHYNFPPFSVGEVGRMGSVSRREIGHG----NLAERAIKKVVPAENAFPYTMRVVSD 447 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 +++++G + A++ G +A D +K VA I+ G++ G Sbjct: 448 ILESNGSSSMASVCGGTLAAMD-------------GGVPIKSPVAGIAMGLIKEGERYAV 494 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I Q + L A+ ++K+ Sbjct: 495 LSDILGNEDHLGDMDFKVAGTIDG-ITACQMDIKIDGLDYAIVEKALEQARQGRMHILKI 553 Query: 234 QKDVISNE 241 + I++ Sbjct: 554 MDEAITSP 561 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 80/226 (35%), Gaps = 22/226 (9%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPRST 70 + + K A+GS +V +T +L T ++ P +N +Y + Sbjct: 15 LKIETGKMAKQADGSAVVSLEETMVLATVVSKKDAPPANQNFFPLQVEYREKYSAAGKFP 74 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G +KRE GR + R+I RALR + QII+ VI +D A + Sbjct: 75 GGFIKRE---GRPSDKEILSARLIDRALRPLFPDGYYQETQIIVT--VISSD-QLNDADV 128 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 G A + ++ + G + G ++ E D+D Sbjct: 129 LGGIAASC----------ALMASDIPFENPMSEVRVGRINGDFLIFPHVQELEESDMDIC 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T I ++G E + S+ + D I + + Q++ Sbjct: 179 IGGTAD-TICMLEG--EMSEISEAEMIGAIKFGHDVIRKICEAQRE 221 >gi|157415517|ref|YP_001482773.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni 81116] gi|187610249|sp|A8FMV9|PNP_CAMJ8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157386481|gb|ABV52796.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|307748158|gb|ADN91428.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni M1] Length = 719 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R IS+ + A GSCL G T L ATL + + +N Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL VD + I + Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + + A+ + Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAV---------LT 500 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G + +Q + Q+ L AK+ ++ + + Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559 Query: 236 DV 237 + Sbjct: 560 EA 561 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L T EEK +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 72 YVKRET---KPSDAETLTARIIDRSLRPLFPKGYTYPTQIVV--MVLSADPKVDLQVMSL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + G I++ + E +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D LNLA+ Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232 Query: 226 RI 227 I Sbjct: 233 AI 234 >gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes OXCC13] gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes OXCC13] Length = 713 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ V GS L G+T L ATL + G Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTSRDNQKIDALMGEYSD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL + + S I + + Sbjct: 380 AFMMHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALIACLPSQEEFSYSIRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++++G + A++ G +AL D +K HVA I+ G++ Sbjct: 436 IMESNGSSSMASVCGGSLALMDAGV-------------PVKNHVAGIAMGLIKEGNKFAV 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ L A++ ++ Sbjct: 483 LTDILGDEDHLGDMDFKVAGTANG-VNALQMDIKIQGITKEIMQVALAQAREGRMHILSK 541 Query: 234 QKDVISN 240 ++ + Sbjct: 542 MQEAMPQ 548 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 81/233 (34%), Gaps = 38/233 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68 +++ +++ A G+ +V DT +L T ++ V + + + G +P Sbjct: 16 VTMETGEIARQASGAVMVSVDDTVVLATVVAKDDVKPGQDFFPLTVDYIEKSYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KRE GR + R+I R +R + Q+II + + Sbjct: 75 --GSFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGYFNEVQVIIHVLSVNPEVDPDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ A AL G + A G + G +++ + +D Sbjct: 130 SMIAASAALCVSGI-------------PFNGPLGAARVGYIDGQYVLNPTASQLPLSKMD 176 Query: 189 ANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 T+ ++ V+ AE F + +++ I +L++ Sbjct: 177 LVVAGTEQA-VLMVESEAEELPEDIMLGAVVFGHEQMKVVID----AIDELVR 224 >gi|328950321|ref|YP_004367656.1| Polyribonucleotide nucleotidyltransferase [Marinithermus hydrothermalis DSM 14884] gi|328450645|gb|AEB11546.1| Polyribonucleotide nucleotidyltransferase [Marinithermus hydrothermalis DSM 14884] Length = 722 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 27/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R GR +R+I + V A GS + G+T +L T TL I + + Sbjct: 333 RADGRGPTDIRDIWIEVDVLPRAHGSAIFTRGETQVLGTVTLGTGRDEQIIDDLGIDESD 392 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + S R+ G + RALR V+ I I D Sbjct: 393 PFLVHYNFPPYSTGEVKRLRGTSRREVGHG----NLAKRALRPVLPDKDAFPYTIRIVGD 448 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V++++G + A +AL D +K VA I+ G++ G P+ Sbjct: 449 VLESNGSSSMATTCAGCLALMDAGV-------------PIKKPVAGIAMGLVMPETGEPV 495 Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + + + L A+ ++ Sbjct: 496 ILTDILGMEDALGDMDFKVTGTRDG-VTALQMDIKIKGLTPEIMRRALEQARQARLAILD 554 Query: 233 LQKDVI 238 + V+ Sbjct: 555 QMEAVL 560 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 28/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 RE+ + +K GS V++GDT ++ TA + +T E+ + Sbjct: 28 RELVIETGKYAKQVSGSVWVRYGDTVVMATA----QASPEPIEADFLPLTVEFEERHYAV 83 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + ++RE GR G ++ R+ R +R + Q+I+ Sbjct: 84 GKIPGSFMRRE---GRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQANPPD 140 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 T A AL +G +AA+ G + G +++ + D Sbjct: 141 VLGPTAASAAL-------------MLSDIPWEGPIAAVRVGRIDGQFVLNPTLQQLEHSD 187 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +D V I+ V+ A +D L A I ++ LQ+ + Sbjct: 188 LDL-VVAGSKDAIIMVEAGANEVP--EDVLVEALEYAHQAIQPIVALQERM 235 >gi|242065778|ref|XP_002454178.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor] gi|241934009|gb|EES07154.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor] Length = 983 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 11/244 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GRQ +++R + GS L GDT +L T TL ++ G Sbjct: 379 LRVDGRQLDEVRPLYCESNTYPVLHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 438 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + + ++ Sbjct: 439 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPESDFPYAVRVNS 494 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ +DG T A++ G +AL D + + + L V + + + D Sbjct: 495 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVG--LVSQVDPATGDISNYRILTD 552 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + A D L A+ ++ Sbjct: 553 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQ 611 Query: 237 VISN 240 IS Sbjct: 612 EIST 615 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 82/241 (34%), Gaps = 43/241 (17%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLP 67 R I+ ++A GS ++ DTH+L A E V ++ +T +Y Sbjct: 77 RSIAFETGKMARFANGSVVISMEDTHVLSTVAAAKSSEPVRDFLP------LTVDYQEKQ 130 Query: 68 RSTG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 + G ++RE G R R+I R +R + QI+++ V+ +DG Sbjct: 131 YAQGVIPTTYMRRE---GAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVN--VLSSDG 185 Query: 124 --GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 A + AL G + I G + G I++ E Sbjct: 186 KQDPDVMAANASSAAL-------------MLSDIPWNGPIGVIRVGRIDGNFILNPTVDE 232 Query: 182 DSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADL---IKLQKD 236 D N + + + A ++ A + LA + I + I+L K Sbjct: 233 --LGSSDLNLIYACSRDKTLMIDVQARE--ITERDLQAGMKLAHSEAIKCIDPQIRLAKR 288 Query: 237 V 237 Sbjct: 289 A 289 >gi|302338543|ref|YP_003803749.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae DSM 11293] gi|301635728|gb|ADK81155.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae DSM 11293] Length = 697 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 87/247 (35%), Gaps = 20/247 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTK 55 +R GR +R I+ + A GS L G+T L T E+ + + Sbjct: 312 VRTDGRDLETVRPITCEVGILDRAHGSALFTRGETQSLAVTTLGTVYDEQMMDNIDGDKT 371 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P S G R R+ G + RAL +V+ I + Sbjct: 372 YENFMLHYNFPPFSVGE-TGRLTTGRREIGHGH----LAHRALEAVLPQKKDFPYTIRVV 426 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G ++L + + V +G AA+ + Sbjct: 427 SEILESNGSSSMATVCGGTLSLLHAGVPIRKPVAGIAMGLVSEGDRAAV---------LT 477 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T+ G I Q + A S D L AK ++ + Sbjct: 478 DILGEEDHLGDMDFKVAGTEDG-ITAFQMDIKIAGISSDLMKRALEQAKKGRMHILGIMN 536 Query: 236 DVISNEV 242 + V Sbjct: 537 ATLKEPV 543 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 85/239 (35%), Gaps = 33/239 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R++ L K A G+ K+ + +L T + E + ++ G + Sbjct: 12 RDLILETGRMAKQANGAVFAKYEGSAVLATVCCGSSPMESLDFVPLQVEYNEKYYAAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G +KRE GR + + R+I R +R + QII + AD Sbjct: 72 P---GGFLKRE---GRPKDKEILVSRLIDRPMRPLFSKEFKRELQIIPT--TVSADQINP 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ A A+ G V A+ + I++ + + S Sbjct: 124 PDIVAMNAASAAVC-------------VSDIPFAGPVGAVRIANVDDELIINPSFDQISR 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--VISNE 241 ++ T G I V+G A+ ++ + + LA+ I L + Q+ ++ + Sbjct: 171 CTLEIVVSGTKDG-ITMVEGGAKEVP--EELLLSAIALAEPAIKKLCEAQEQLMALAGK 226 >gi|269123180|ref|YP_003305757.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus moniliformis DSM 12112] gi|268314506|gb|ACZ00880.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus moniliformis DSM 12112] Length = 732 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R GR+ +++R ++ V K GS L G+T L TATL K I + G Sbjct: 340 RADGRKIDEIRPLNAQIDVLKMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNK 399 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G A R+ G + RAL++V+ L + + + Sbjct: 400 KFFLHYNFPPFSVGEAGFMRAPGRRELGHG----NLAERALKAVMPLIDDFPYTVRVVSE 455 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL +KG VA I+ G++ Sbjct: 456 ITESNGSSSQASICGGSLALMAAGV-------------PIKGTVAGIAMGLIKEAENFTV 502 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A +I++ Sbjct: 503 LTDIQGLEDHLGDMDFKVAGTKKG-ITAIQMDIKIEGINKEIMEIALTQAHKGRMHIIEV 561 Query: 234 QKDVI 238 + I Sbjct: 562 MEATI 566 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 54/248 (21%) Query: 13 EISLTRR-VSKYAEGSCLV---------------KFGDTHLLTTATLEEKVPMWIRNTKH 56 E+ + +++ A GS LV + ++E + + Sbjct: 15 EVKIETGEIARQAGGSVLVTSGGTTVLVTTTRSKE-----------VKEGQDFFPLTVDY 63 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 G P G +KRE+ + I R+I R +R + + + Sbjct: 64 IEKFYATGKFP---GGFIKRES---KPSTEEVLISRLIDRPIRPLFPEGFF--NAVHVVI 115 Query: 117 DVIQADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 +V+ DG A G AL G VA ++ G + G I Sbjct: 116 NVVSFDGINMPEDIATIGVSFAL-------------GLSDIPFSGPVAGVTVGYVNGEYI 162 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ++ D + + +D+ + T S I V+ A S++ + L + I + + Q Sbjct: 163 INPDKEQRANMDIYLSVAGTKSA-ITMVEAGASE--VSEEEMLNAIMLGHEEIKKICE-Q 218 Query: 235 KDVISNEV 242 ++ I N + Sbjct: 219 QETILNSL 226 >gi|283954815|ref|ZP_06372331.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 414] gi|283793655|gb|EFC32408.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 414] Length = 713 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R IS+ + A GSCL G T L ATL + + +N Sbjct: 355 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 414 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y S G +A R+ G + RAL VD + I + Sbjct: 415 NERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 468 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + + AI + Sbjct: 469 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAI---------LT 519 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G + +Q + Q+ L AK+ ++ + + Sbjct: 520 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 578 Query: 236 DV 237 + Sbjct: 579 EA 580 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 88/253 (34%), Gaps = 54/253 (21%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75 V+K A G+ L+K G + +L T EEK +T +Y + G VK Sbjct: 38 VAKQATGAVLMKQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKTYAAGKIPGGYVK 93 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGA 133 RE + R+I R+LR + QI++ V+ AD + ++ A Sbjct: 94 RET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSLNAA 148 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 VAL+ M K V + G + G I++ + E +D +V Sbjct: 149 SVALYLSDIPM-------------KAPVCGVRIGRIDGNFILNPNNEELKNSTLDL-YVA 194 Query: 194 TDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKDRIA 228 ++ ++ A E F ++D LNLA+ I Sbjct: 195 GVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELNEDEILEALNLAQKAIL 254 Query: 229 DLIKLQKDVISNE 241 + K+ S Sbjct: 255 NGSNAYKEAFSKH 267 >gi|296810936|ref|XP_002845806.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480] gi|238843194|gb|EEQ32856.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480] Length = 298 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 87/266 (32%), Gaps = 26/266 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59 +RL GR+ N++R + + + GS + G+T +L T + I Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTTVLCTVHGPAEGKRSETAGATGAVI 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + + +R K+ A G G R + E+ +I A + + I I Sbjct: 74 SVVVNLAGFANVDRKKKSAAGGGGGDRQATTELANLIRDAFQPHIHAHLYPRSTISIHVS 133 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-----CGMLCGY 172 V+ +DG A + +AL D M + + A++ G + Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQMGGVNET 193 Query: 173 --PIVDLDYGED----------STIDVDANFVMTDSGHIV---EVQGSA---ERATFSQD 214 P++D+ E+ + D N D E Q + + Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDINIPKDDEDEYDAENENQMLSIVHMDSGVHVS 253 Query: 215 HFFAMLNLAKDRIADLIKLQKDVISN 240 + M + D ++ V+ Sbjct: 254 YLETMFAVGIDGCKQTREILNGVLKG 279 >gi|293335373|ref|NP_001168912.1| hypothetical protein LOC100382718 [Zea mays] gi|223973667|gb|ACN31021.1| unknown [Zea mays] Length = 209 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 25/226 (11%) Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 + + A GS +FG T ++ + + + + G + +T R Sbjct: 1 MQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRG- 59 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 QG ++E M+ +AL V L + + V+++ G I+ A + Sbjct: 60 -------QGADNKEYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASL 112 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MT 194 AL D M D V ++S I+D E++ D M Sbjct: 113 ALADAGIMMYDL-------------VTSVSVSCFRKNIIIDPTSDEEAWQDGSLVVAFMP 159 Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 I ++ + E +S + L D + L + +D + + Sbjct: 160 ARKEITQLTLTGE---WSDGRITNAVELCMDACSKLGDILRDRLKD 202 >gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae] Length = 269 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 18/163 (11%) Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 R+I L V A+GS ++ GDT ++ + ++P I G + E+ P S Sbjct: 47 RKIYLQTGVITQAKGSAYIEIGDTKVIVSVFDPREIPNRIDYGLKGEVYCEFKYAPFSCK 106 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 R+ + Q ++ ++ +AL S V L L + Q+ + V++ DG +AAI Sbjct: 107 KRMMHQ-----QNNEEKQSSDIMRKALESTVCLHELPNFQVDVYAMVLEEDGSALSAAII 161 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 VAL M D + +++ G+ G I Sbjct: 162 AGGVALTLAGVPMYD-------------QITSVTLGVRNGALI 191 >gi|73666963|ref|YP_302979.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia canis str. Jake] gi|123615003|sp|Q3YSC4|PNP_EHRCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|72394104|gb|AAZ68381.1| 3 exoribonuclease:RNA binding S1:KH [Ehrlichia canis str. Jake] Length = 796 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +++R I + V A GS L G+T L L + + Sbjct: 319 RIDGRAFDEIRNIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P + G A G R ++ RA+R V+ + I + + Sbjct: 379 NFLLHYNFPPYAVGE----SAALRAPGRREIGHGKLAWRAIRYVLPEKSDFPYTIRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + ++DG + A + GA +AL D +K VA I+ G++ Sbjct: 435 ITESDGSSSMATVCGASLALMDTGV-------------PIKSPVAGIAMGLIKEGDKFII 481 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + S D L AKD ++ Sbjct: 482 LSDILGDEDYLGDMDFKVAGTAEG-VTALQMDMKISGISVDVIEKALLQAKDGRMHILSK 540 Query: 234 QKDVI 238 VI Sbjct: 541 MNAVI 545 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 16/176 (9%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 +++ A G+ +V + T +L T +E V + + G +P G +KR Sbjct: 23 IARQANGAVMVSYAGTTVLATVVTGKTKEPVDFLPLTVQFVAKSYAVGKIP---GGFLKR 79 Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGAW 134 E G+ R I R+I R++R + I+ C+++ D T A+ GA Sbjct: 80 E---GKPSDRETLISRLIDRSIRPLFPSGFYDEVSIV--CNLLSYDTVTPPEVTALIGAT 134 Query: 135 VALHDCL---QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AL + L K + A + ML + L EDS + V Sbjct: 135 AALSISGVSFNGLVAGVRIGYLPSEDKYLLNASADDMLYSSLDLFLSGNEDSVLMV 190 >gi|72382649|ref|YP_292004.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. NATL2A] gi|123620931|sp|Q46JM7|PNP_PROMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|72002499|gb|AAZ58301.1| RNA binding S1:KH [Prochlorococcus marinus str. NATL2A] Length = 722 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 34/237 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REI LT + A GS +++ GDT +L TA + E V + G +P Sbjct: 13 REIKLTTGRFAPQAGGSVMIECGDTSVLVTATKSSGREGVDFLPLMCDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123 G+ ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 73 ---GSFMRRE---GRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERVPAD- 125 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A +G +AA+ G+L +++ Y E Sbjct: 126 ---VLAVTGASMATLMAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + S+ ++ + I +LI QK+V+ Sbjct: 170 RGDLDLVVAGTPDG-VVMVEAGANQ--LSEQDVIEAIDFGYEAITELINAQKEVLKE 223 Score = 98.2 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 88/246 (35%), Gaps = 21/246 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55 R+ GR+ N++R I V GS L + G T +L+TATL NT Sbjct: 323 RVDGRELNEVRAIDADAAVLPNRVHGSALFQRGLTQVLSTATLGTPSDAQEMDDLNPNTD 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P S G R+ G + RAL V+ + + Sbjct: 383 KTYIH-HYNFPPYSVGETRPMRTPGRREVGHG----ALAERALIPVLPAKDTFPYVLRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V+ ++G T A++ G+ +AL D ++ + + +G + Sbjct: 438 SEVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIKEGKEV---------RILT 488 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T+ G I +Q + + +N A ++ Sbjct: 489 DIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPIETIGEAINQALPARTHILGKML 547 Query: 236 DVISNE 241 D I Sbjct: 548 DAIETP 553 >gi|124026371|ref|YP_001015487.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. NATL1A] gi|187610310|sp|A2C412|PNP_PROM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123961439|gb|ABM76222.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. NATL1A] Length = 722 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 34/237 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REI LT + A GS +++ GDT +L TA + E V + G +P Sbjct: 13 REIKLTTGRFAPQAGGSVMIECGDTSVLVTATKSSGREGVDFLPLMCDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123 G+ ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 73 ---GSFMRRE---GRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERVPAD- 125 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A +G +AA+ G+L +++ Y E Sbjct: 126 ---VLAVTGASMATLMAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + S+ ++ + I +LI QK+V+ Sbjct: 170 RGDLDLVVAGTPDG-VVMVEAGANQ--LSEQDVIEAIDFGYEAITELINAQKEVLKE 223 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 88/246 (35%), Gaps = 21/246 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55 R+ GR+ N++R I V GS L + G T +L+TATL NT Sbjct: 323 RVDGRELNEVRAIEADAAVLPNRVHGSALFQRGLTQVLSTATLGTPSDAQEMDDLNPNTD 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P S G R+ G + RAL V+ + + Sbjct: 383 KTYIH-HYNFPPYSVGETRPMRTPGRREVGHG----ALAERALIPVLPAKDTFPYVLRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V+ ++G T A++ G+ +AL D ++ + + +G + Sbjct: 438 SEVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIKEGKEV---------RILT 488 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T+ G I +Q + + +N A ++ Sbjct: 489 DIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPIETIGEAINQALPARTHILGKML 547 Query: 236 DVISNE 241 D I Sbjct: 548 DAIETP 553 >gi|262277754|ref|ZP_06055547.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium HIMB114] gi|262224857|gb|EEY75316.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium HIMB114] Length = 692 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMW--IRNTKHG 57 R+ GR+ +++R+I + A GS L G+T + ATL + + + + Sbjct: 313 RIDGRKLDEVRDILCEVGIIPRAHGSSLFTRGETQAIVAATLGTSDDEQRFESLEGMQKS 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+ + + I I D Sbjct: 373 RFMLHYNFPPFSVGEVGRVGGTGRREIGHG----KLAWRAINAALPKHEDFPYTIRIVSD 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G+ +AL +E +A I+ G++ Sbjct: 429 ITESNGSSSMATVCGSSMALMHAGVPIEK-------------PIAGIAMGLIKEGNEFSV 475 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + + + L AK D++ Sbjct: 476 LSDILGDEDHLGDMDFKVAGSADG-ITSLQMDIKINGITFEIMEKALEQAKKGRLDILNE 534 Query: 234 QKDVISN 240 I Sbjct: 535 MAKAIKE 541 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 +S+ +++ A+G+ ++++GDT +++TA + + G +P Sbjct: 15 NLSIETGKIARQADGAVILRWGDTVIISTAVASKKTNPDTDFFPLTVNYQEKFYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA R I R+I R +R + Q++ + Sbjct: 75 ---GGYFKREA---RPTESETLISRLIDRPIRPLFPDQFRNETQVLTTVLSYDKECDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG------- 180 A+ + AL +G VAA G++ G I++ Sbjct: 129 LAVIASSAALS-------------ISGLPFQGPVAASKVGLIDGKFILNPSKESIKSSNL 175 Query: 181 EDSTIDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 E +M +++ + E Q + F ++F ++NL I +L K Sbjct: 176 ELVVAGTKEAVLMVESEASGLTEAQML-DAVKFGHENFLPVINL----IEELAK 224 >gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes HOxBLS] gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes HOxBLS] Length = 707 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ V GS L G+T L ATL + G Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTSRDNQKIDALMGEYSD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL + + S I + + Sbjct: 380 AFMMHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALVACLPSQDEFSYSIRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++++G + A++ G +AL D +K HVA I+ G++ Sbjct: 436 IMESNGSSSMASVCGGSLALMDAGV-------------PVKTHVAGIAMGLIKEGNKFAV 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ L A++ ++ Sbjct: 483 LTDILGDEDHLGDMDFKVAGTSTG-VTALQMDIKIQGITKEIMQVALAQAREGRMHILGK 541 Query: 234 QKDVISN 240 ++ + Sbjct: 542 MQEAMPQ 548 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 81/232 (34%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +V DT +L T ++ V + + + G +P Sbjct: 16 VTLETGEIARQASGAVVVSMDDTVVLATVVAKDDVKPGQDFFPLTVDYIEKSYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KRE GR + R+I R +R + Q+II + + Sbjct: 75 --GSFFKRE---GRPSEKETLTSRLIDRPIRPLFPDGYFNEVQVIIHVLSVNPEIDPDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ A AL G + A G + G +++ + +D Sbjct: 130 SMIAASAALCVSGI-------------PFNGPLGAARVGYIDGQYVLNPTASQLPLSQLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T+ ++ +E +D + +++ +I +++S Sbjct: 177 LVVAGTEQAVLMV---ESEAKELPEDVMLGAVVFGHEQMKVVIDAIDELVSE 225 >gi|296087634|emb|CBI34890.3| unnamed protein product [Vitis vinifera] Length = 905 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 86/240 (35%), Gaps = 11/240 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR N++R + GS L GDT +L T TL ++ G Sbjct: 317 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 376 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + I+ Sbjct: 377 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEEEFPYTVRINS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ +DG T A + G +AL D + + + L V + + + D Sbjct: 433 EVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVG--LVTEVDPSTNTIKDYRILTD 490 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + A D L A ++ + Sbjct: 491 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRMEQ 549 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 34/221 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R I+ ++++A G+ ++ +T +L+T +T +Y + Sbjct: 16 RSITFETGKIARFANGAVVMSMDETKVLSTV----ASSKGDAARDFLPLTVDYQEKHFAQ 71 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124 G ++RE R R+I R +R + Q++ V+ +DG Sbjct: 72 GVIPTTFMRREGAPR---ERELLCGRLIDRPIRPLFPAGFYHEVQVMAS--VLSSDGKQD 126 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A AL G + I G +CG IV+ E S Sbjct: 127 PDVMAANATSAAL-------------MLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSL 173 Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAK 224 D++ + T + ++VQ S+ A L LA Sbjct: 174 SDLNLVYACTRDKTLMIDVQA----REISEKDLEAALRLAH 210 >gi|160872287|ref|ZP_02062419.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Rickettsiella grylli] gi|159121086|gb|EDP46424.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Rickettsiella grylli] Length = 712 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R I++ GS L G+T L TL + Sbjct: 325 RIDGRDKKAVRPITIEPGFLPRTHGSALFTRGETQALVVTTLGTDRDAQTVEALDGEGRE 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RALR+V+ + + + + Sbjct: 385 TFMLHYNFPPYSVGETGQIGSPKRREIGHG----NLAKRALRAVLPSESDFPYVLRVVSE 440 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A + GA VAL D LK HVA I+ G++ G Sbjct: 441 ITESNGSSSMATVCGASVALMDAGV-------------PLKKHVAGIAMGLIKEGEQFAV 487 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ LN A++ ++ + Sbjct: 488 LTDILGDEDHLGDMDFKVAGTVDG-VTALQMDIKIEGITEEILKVALNQAREGRLHILSI 546 Query: 234 QKDVISNE 241 K+ ++ Sbjct: 547 MKEALAEP 554 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 21/167 (12%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q++ D A+ Sbjct: 84 GGYFKRE---GRPSEKEILTSRLIDRPIRPLFPEGFYNEVQVVATVLSSTPDINPDIPAL 140 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL K +AA+ G G I++ E T D+D Sbjct: 141 IGASAALALSGL-------------PFKEPIAAVRVGYADGQYILNPSMKELETSDLDLV 187 Query: 191 FVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+ + VE Q A S++ + ++ +I+ K+ Sbjct: 188 VAATEKAVLMVESQA----AELSEEIMLKAILFGHQQMQGVIQSIKE 230 >gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4] gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4] gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing protein, putative (AFU_orthologue; AFUA_2G03740) [Aspergillus nidulans FGSC A4] Length = 265 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 87/253 (34%), Gaps = 18/253 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55 +RL GR+ N++R + + + GS + G+T +L + + + Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSS 73 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + + ++ +R +R S RQ GR I + A +S + I I Sbjct: 74 GAVVEVDVNIAGFASVDRKRRAGGSDRQSGR---IASTLRSAFQSHLHTYLYPHSTISIH 130 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPI 174 V+ +DG AA+ +AL D M + G + M P+ Sbjct: 131 VSVLSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAG--MSGSASTPRDPMNDTLDPL 188 Query: 175 VDLDYGEDS------TIDVDANFVMTDSGHIVE-VQGSAERATFSQDHFFAMLNLAKDRI 227 +D+ E+ A VMTD V + + ML + D Sbjct: 189 LDVSLPEEQELPFLTVATTSAPAVMTDGDEDDMKVSMLTMDSKVHYSYIETMLAVGVDGC 248 Query: 228 ADLIKLQKDVISN 240 + ++ VI Sbjct: 249 KQVREILDSVIKG 261 >gi|269302800|gb|ACZ32900.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae LPCoLN] Length = 694 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKH 56 +R GR +R I++ GSCL G+T L TL E + + Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL + SA I I+ Sbjct: 374 SKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHALPDSATFPYTIRIES 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ G +AL D + +A I+ G++ G Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PISSPIAGIAMGLILDDQGAI 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 I+ D+ ED D+D + G I Q + + L+ AK D++ Sbjct: 477 ILSDISGLEDHLGDMDFKIAGSGKG-ITAFQMDIKVEGITPAIMKKALSQAKQGCNDILN 535 Query: 233 LQKDVIS 239 + + +S Sbjct: 536 IMNEALS 542 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 26/221 (11%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ LV+ G+T + L++KV + ++ ++ G Sbjct: 18 FETGKIARQANGAVLVRSGETCVFASACAVDLDDKVDFLPLRVDYQE---KFSSTGKTLG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE GR + + R+I R+LR + Q++ DG Sbjct: 75 GFIKRE---GRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVW--SYDGQV------ 123 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191 L D L + VA + G + +++ E ++ +D Sbjct: 124 -----LPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVL 178 Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 T++ I+ ++G F+++ + I + K Sbjct: 179 AGTENA-ILMIEG--HCDFFTEEQVLDAIEFGHKHIVTICK 216 >gi|47847669|dbj|BAD21450.1| putative polyribonucleotide nucleotidyltransferase [Oryza sativa Japonica Group] Length = 982 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 13/245 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GRQ +++R + GS L GDT +L T TL ++ G Sbjct: 378 LRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 437 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S KR ++ R+ G + +AL +V+ + ++ Sbjct: 438 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPEGEFPYTVRVNS 493 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 +V+ +DG T A++ G +AL D + + + V + + G + Y I+ Sbjct: 494 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSE---VDQTTGDISSYRILT 550 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I +Q + A D L A+ ++ Sbjct: 551 DILGLEDHLGDMDFKIAGTRRG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMD 609 Query: 236 DVISN 240 IS+ Sbjct: 610 QEISS 614 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 77/238 (32%), Gaps = 41/238 (17%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLP 67 R IS ++A GS ++ DTH+L A E V ++ +T +Y Sbjct: 70 RVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLP------LTVDYQEKQ 123 Query: 68 RSTG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI----IIDCDVI 119 + G ++RE G R R+I R +R + Q+ II +VI Sbjct: 124 YAQGVIPTTYMRRE---GAPKERELLCGRIIDRPIRPLFPPGFYHEVQVMNATIIMVNVI 180 Query: 120 QADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +DG A + AL G + I G + G +++ Sbjct: 181 SSDGKQDPDVMAANASSAAL-------------MLSDIPWNGPIGVIRVGRIDGNFVLNP 227 Query: 178 DYGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 E D N V + + A ++ A + LA I Q Sbjct: 228 TVDE--LGLSDLNLVYACSRDKTLMIDVQARE--ITERDLQAGMKLAHAEAVKCINPQ 281 >gi|68171419|ref|ZP_00544810.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis str. Sapulpa] gi|67999161|gb|EAM85820.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis str. Sapulpa] Length = 554 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 89/245 (36%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +++R+I + V A GS L G+T L L + + Sbjct: 77 RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 136 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P + G A G R ++ RA+R V+ + I + + Sbjct: 137 NFLLHYNFPPYAVGE----SAALRAPGRREIGHGKLAWRAIRYVLPEKSDFPYTIRVVSE 192 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + ++DG + A + GA +AL D +K VA I+ G++ Sbjct: 193 ITESDGSSSMATVCGASLALMDTGV-------------PIKSPVAGIAMGLIKEDDRFII 239 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + D L AKD ++ Sbjct: 240 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDMKISGIDIDIIEKALLQAKDGRMHILSK 298 Query: 234 QKDVI 238 VI Sbjct: 299 MNAVI 303 >gi|33242368|ref|NP_877309.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae TW-183] gi|33236879|gb|AAP98966.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae TW-183] Length = 694 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKH 56 +R GR +R I++ GSCL G+T L TL E + + Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL + SA I I+ Sbjct: 374 SKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHALPDSATFPYTIRIES 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ G +AL D + +A I+ G++ G Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PISSPIAGIAMGLILDDQGAI 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 I+ D+ ED D+D + G I Q + + L+ AK D++ Sbjct: 477 ILSDISGLEDHLGDMDFKIAGSGKG-ITAFQMDIKVEGITPAIMKKALSQAKQGCNDILN 535 Query: 233 LQKDVIS 239 + + +S Sbjct: 536 IMNEALS 542 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 26/221 (11%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ LV+ G+T + L++KV + ++ ++ G Sbjct: 18 FETGKIARQANGAVLVRSGETCVFASACAVDLDDKVDFLPLRVDYQE---KFSSTGKTLG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE GR + + R+I R+LR + Q++ DG Sbjct: 75 GFIKRE---GRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVW--SYDGQV------ 123 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191 L D L + VA + G + +++ E ++ +D Sbjct: 124 -----LPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVL 178 Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 T++ I+ ++G F+++ + I + K Sbjct: 179 AGTENA-ILMIEG--HCDFFTEEQVLDAIEFGHKHIVTICK 216 >gi|15618907|ref|NP_225193.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae CWL029] gi|15836530|ref|NP_301054.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae J138] gi|16752027|ref|NP_445393.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila pneumoniae AR39] gi|81789835|sp|Q9Z6R0|PNP_CHLPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|4377328|gb|AAD19136.1| Polyribonucleotide Nucleotidyltransferase [Chlamydophila pneumoniae CWL029] gi|7189766|gb|AAF38644.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae AR39] gi|8979372|dbj|BAA99206.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae J138] Length = 694 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKH 56 +R GR +R I++ GSCL G+T L TL E + + Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL + SA I I+ Sbjct: 374 SKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHALPDSATFPYTIRIES 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ G +AL D + +A I+ G++ G Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PISSPIAGIAMGLILDDQGAI 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 I+ D+ ED D+D + G I Q + + L+ AK D++ Sbjct: 477 ILSDISGLEDHLGDMDFKIAGSGKG-ITAFQMDIKVEGITPAIMKKALSQAKQGCNDILN 535 Query: 233 LQKDVIS 239 + + +S Sbjct: 536 IMNEALS 542 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 26/221 (11%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ LV+ G+T + L++KV + ++ ++ G Sbjct: 18 FETGKIARQANGAVLVRSGETCVFASACAVDLDDKVDFLPLRVDYQE---KFSSTGKTLG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE GR + + R+I R+LR + Q++ DG Sbjct: 75 GFIKRE---GRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVW--SYDGQV------ 123 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191 L D L + VA + G + +++ E ++ +D Sbjct: 124 -----LPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVL 178 Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 T++ I+ ++G F+++ + I + K Sbjct: 179 AGTENA-ILMIEG--HCDFFTEEQVLDAIEFGHKHIVTICK 216 >gi|325290354|ref|YP_004266535.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus glycolicus DSM 8271] gi|324965755|gb|ADY56534.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus glycolicus DSM 8271] Length = 713 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR +++R I++ GS + G T ++T ATL +E++ + + Sbjct: 322 IRPDGRALDEIRPITVEVAALPRTHGSAVFTRGQTQVMTVATLGAVSDEQIIDGLGLEES 381 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RAL ++ A + + Sbjct: 382 KRYMHHYNFPPFSVGEVRPMRAPGRREIGHG----NLAERALIPMIPGEAEFPYTLRLVS 437 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 438 EVLESNGSSSMASVCGSTLALMDAGV-------------PIKAPVAGIAMGLIQEESQYA 484 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK+ ++ Sbjct: 485 ILSDIQGLEDHDGDMDFKVAGTAKG-VTALQMDIKIKGVSREILAQALKQAKEGRMFILD 543 Query: 233 LQKDVISNE 241 VI Sbjct: 544 KMLAVIGEP 552 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 27/226 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHL--LTTAT--LEEKVPMWIRNTKHGWITAEYGML 66 R +S + A G+ +K+GDT + TA+ E + + + G + Sbjct: 15 RTMSFETGRIGRQAGGAIFLKYGDTVVSAFATASSKPREGIDFFPLTCEFEERLYAAGKI 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + Q++ + D T Sbjct: 75 P---GGFIKRE---GRPSEKATLTARLIDRPIRPLFPEGYQNDVQVVTMVMSVDQDCPTD 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 +AI A AL + +G +A + G++ G +++ + + Sbjct: 129 VSAINAASAAL-------------TISNIPFEGPIAGVIVGLVDGQFVINPTVDQAARSQ 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T IV V+ A S++ + A + I + + Sbjct: 176 MYLTVAGTKDA-IVMVEAGANE--ISEEQMLDAMIFAHEEIKKIAE 218 >gi|206895816|ref|YP_002247081.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter proteolyticus DSM 5265] gi|257096676|sp|B5Y8I4|PNP_COPPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206738433|gb|ACI17511.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter proteolyticus DSM 5265] Length = 697 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +++R + V GS L G T +L+T TL + I + Sbjct: 316 RVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSFSDVQFIDAIGLEEFK 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y P STG R S R+ G ++ RAL ++ + I + + Sbjct: 376 RFMHQYDFPPFSTGEVKPRRGPSRREIGHG----ALVERALSYLIPSEEVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++++G T A+ + +AL M + + + D+ Sbjct: 432 VLESNGSTSMASTCASSIALMSAGVPMARHVGGIAMGLIEYND---------ENVVLTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + S + ++ A+ + ++ + D Sbjct: 483 QGLEDHLGDMDFKVAGTREG-ITALQLDVKVKGISVETLDKAIDQAEVARSKILDVLYDA 541 Query: 238 ISNE 241 I + Sbjct: 542 IPSP 545 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 28/235 (11%) Query: 13 EISLTRRVSK-YAEGSCLVKFGDTHLLTTA--TLEEK--VPMWIRNTKHGWITAEYGMLP 67 ++ A G+ L +FGDT L+T + E K + + + + G +P Sbjct: 17 KVIFQSGFLALQANGAVLARFGDTVALSTVLMSSEPKLDIDFFPLTVDYEEKSYAVGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G K+E GR R+I R++R + Q++ + Sbjct: 77 ---GGFFKKE---GRPTDMEILKARLIDRSIRPMFPDGMRNEVQVLNMILAADMENPPDI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ G AL + +A + G + G +++ + E S + Sbjct: 131 VALNGTAAALA-------------VSDIPIPELIAGVRVGYIDGEYVLNPTFAEMSESQL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D T IV ++ A A + L A++ I +I L + + +V Sbjct: 178 DLVVAGTRD-SIVMIEAGA--AEVDKSILIGGLKFAQEGIRQIIDLIAE-LKEKV 228 >gi|52080276|ref|YP_079067.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis ATCC 14580] gi|52785653|ref|YP_091482.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis ATCC 14580] gi|319645944|ref|ZP_08000174.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2] gi|81385548|sp|Q65JH5|PNP_BACLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52003487|gb|AAU23429.1| polynucleotide phosphorylase (PNPase) [Bacillus licheniformis ATCC 14580] gi|52348155|gb|AAU40789.1| PnpA [Bacillus licheniformis ATCC 14580] gi|317391694|gb|EFV72491.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2] Length = 705 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRAVDEIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL +V I + Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPIVPSEKDFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGDNYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++++ Sbjct: 478 VLTDIQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILE 536 Query: 233 LQKDVISN 240 ++ Sbjct: 537 SMLSTLAE 544 Score = 89.0 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ +V++GDT +L TA+ E K V + + G +P Sbjct: 15 RKLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKTVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + I++ + D+ Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDNKFIINPTLEQLEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ ++ + + I LI Q+++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224 >gi|269792330|ref|YP_003317234.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099965|gb|ACZ18952.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 752 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 92/260 (35%), Gaps = 48/260 (18%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---------------LEEK 46 R GR +Q+R I+ V GS L G+T L T ++E Sbjct: 312 RADGRAMDQLRPITCEVGVLPKVHGSALFTRGETQALAVTTLGMMGEDDQILDGLKIDEP 371 Query: 47 VPMWIRNTKHGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105 ++ Y P S G R R G R + RALR ++ Sbjct: 372 AKRFL---------LHYNFPPYSVGEVRPMRG-----PGRREIGHGALAERALRPMLPSE 417 Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165 + + D+++++G + A++ G +++ D +K VA ++ Sbjct: 418 DQFPYVVRVVSDILESNGSSSMASVCGGSLSMMDAGV-------------PIKKAVAGVA 464 Query: 166 CGMLCG----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 G++ + D+ ED D+D T G + +Q + +++ L+ Sbjct: 465 MGLVTDGSRVCILTDIQGLEDHYGDMDFKVAGTRDG-VTALQMDNKAGGITREILKRALD 523 Query: 222 LAKDRIADLIKLQKDVISNE 241 A+D ++ + I + Sbjct: 524 QARDGRMRILDIMDGAIRSP 543 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R +S K A G+ +G+T +L T+ E + + + G + Sbjct: 12 RVLSFETGRMAKQANGAVYASYGETAVLVTSVMSEKPREGLDFFPLLVDYEERFYSAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + RM+ R++RS+ + + V+ D Sbjct: 72 P---GGFIKRE---GRPSETAILSGRMVDRSIRSLFPEHM--RNDVHVVATVLSVD---- 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + L + G + A+ G + G +V+ + + Sbjct: 120 -------QHNPPNVLAINAASAALAISDIPWDGPIGAVRIGCIDGQLLVNPTEPQMAEST 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D V G I V+ A S+D + LA I ++ +D Sbjct: 173 LDL-LVAGHDGGITMVEAGANE--VSEDLLVDAMELAHQEIRRIVAFIRD 219 >gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella wadsworthensis 3_1_45B] gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella wadsworthensis 3_1_45B] Length = 707 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 26/244 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R+ GR +R I + + V GS L G+T L T TL K I + +H Sbjct: 322 RIDGRDTRTVRPIEIRQGVLPRTHGSALFTRGETQALVTTTLGTKQDEQIIDGLCEEQHD 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL++V+ + + + Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALKAVLPSPEEFQYTLRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +++ D LK +VA ++ G++ Sbjct: 438 ICESNGSSSMASVCGGCLSMLDAGV-------------PLKDYVAGVAMGLIKEGNRFAV 484 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G + +Q + + + A L A D ++ Sbjct: 485 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKIEGITPEIMQAALAQAHDGRQHILSR 543 Query: 234 QKDV 237 ++ Sbjct: 544 MHEM 547 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 81/234 (34%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 +++L +++ A G+ + + DT +L T +++ + + T G +P Sbjct: 17 DVTLETGEIARQATGAVICRMDDTVVLATVVCKKEAKPGQDFFPLTVDYIEKTYAAGRIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G KRE GR + R+I R +R + Q+II V+ AD Sbjct: 77 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPDGFFNEVQVII--HVLSADPAVDP 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A+ GA AL +G + A G + +V+ + T Sbjct: 129 DIPAMLGASAALAVSGI-------------PFRGPIGACRVGYIDDKFVVNPTTEQLKTS 175 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 +D T ++ +E + + +A + I +L+ Sbjct: 176 RLDLVVAGTQRAVLMV---ESEADILPEKTMLDAVVFGHREMQVAINAINELVA 226 >gi|325971218|ref|YP_004247409.1| polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy] gi|324026456|gb|ADY13215.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy] Length = 702 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 91/251 (36%), Gaps = 31/251 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTKH 56 R GR +Q+R I+ + GS L G+T L TA+ E+ Sbjct: 316 RTDGRSVDQIRPITCEVGLLDRTHGSALFTRGETQALAVTTLGTASDEQMFDTIDGEKSF 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R + R+ G + RAL ++V + + Sbjct: 376 SSFMLHYNFPPYSVGE-CGRLSTGRREIGHGH----LAQRALEAIVPNKESFPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 ++++++G + A++ G ++L D +K VA I+ G++ Sbjct: 431 EIMESNGSSSMASVCGGCLSLMDAGV-------------PIKKPVAGIAMGLITEGADYS 477 Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 + D+ ED D+D + G I Q + A + + L AK Sbjct: 478 KYVVLSDILGEEDHLGDMDFKVAGSRDG-ITAFQMDIKIAGVTPEIMKKALEQAKQGRMH 536 Query: 230 LIKLQKDVISN 240 ++ + + +SN Sbjct: 537 ILSIMEGALSN 547 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 26/217 (11%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 V + EGS ++ + E + + ++ G +P G +KREA Sbjct: 30 VYAHYEGSAVIAT----VCCGKEPNEALDYVPLSVEYNEKYYAAGKIP---GGFLKREA- 81 Query: 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139 R + + R+I R +R + D A G R+I + V+ +D D Sbjct: 82 --RPKDKEILVSRLIDRPMRPLFD-KAFG-REIQVVPTVVSSDMNN-----------TPD 126 Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199 + + G +AA+ M+ G +V+ + + +D T G I Sbjct: 127 IIAINAASAAVTISDIPFNGPIAAVRISMVDGAYVVNPTFSQIERSSLDIVVAGTRDG-I 185 Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V+G A+ S++ + A+ I L Q + Sbjct: 186 TMVEGGAKE--VSEEVMLEAIATAQPYITKLCDAQLE 220 >gi|121612552|ref|YP_001000929.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni 81-176] gi|167005840|ref|ZP_02271598.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni subsp. jejuni 81-176] gi|187610251|sp|A1W0N8|PNP_CAMJJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|87249933|gb|EAQ72892.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni 81-176] Length = 719 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R IS+ + A GSCL G T L ATL + + +N Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL VD + I + Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYIIRLV 449 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + + A+ + Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAV---------LT 500 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G + +Q + Q+ L AK+ ++ + + Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559 Query: 236 DV 237 + Sbjct: 560 EA 561 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L T EEK +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRQGKSIVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 72 YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + G I++ + E +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D LNLA+ Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232 Query: 226 RI 227 I Sbjct: 233 AI 234 >gi|313159231|gb|EFR58601.1| polyribonucleotide nucleotidyltransferase [Alistipes sp. HGB5] Length = 744 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 16/245 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +RL GR+ +++R I A GS + G+T LT+ T L+EK + Sbjct: 323 LRLDGRKTDEIRPIWCEVDYLPAAHGSAIFTRGETQSLTSVTLGTKLDEKQKDEVLVQGT 382 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG +S R+ G + RAL+ +V L + + Sbjct: 383 EQFVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMVPLGEENPYAVRVVS 438 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A + +AL D ++ + + G ++ G + D Sbjct: 439 DILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAM-----GLISDSQSGKWA--VLSD 491 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + A L A+ ++ + Sbjct: 492 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEVLAAALEQARKGRLHILGKLTE 550 Query: 237 VISNE 241 I+ Sbjct: 551 CIAEP 555 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 90/236 (38%), Gaps = 28/236 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R+I + K A+GS +VK GDT LL T + ++ A G Sbjct: 20 RQIEIETGKLAKQADGSVVVKQGDTMLLATVVAAKDAKPDTDFMPLQVEYKEKYASCGRY 79 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I RALR + ++ + ++I AD + Sbjct: 80 P---GGFMKRE---GRANDSEILVARLIDRALRPLFPAD--YHAEVYVTVNLISADKDIQ 131 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D L + + G ++ + L G +++ + E +D Sbjct: 132 -----------PDALAGLAASAALAVSDIPFGGPISEVRVARLDGEYVINPKFSEMDRVD 180 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D V +I+ V+G E S++ + A + I +Q + +S E+ Sbjct: 181 LDI-MVGGTIDNILMVEG--EMKEVSEEVMLGAIKFAHEEIKKHCAVQIE-LSKEL 232 >gi|258543760|ref|ZP_05703994.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis ATCC 15826] gi|258520996|gb|EEV89855.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis ATCC 15826] Length = 693 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ V GS L G+T L ATL I + G Sbjct: 312 RIDGRDTVTVRPITIRTGVLPRVHGSALFTRGETQALVVATLGTGRDAQIIDALTGEYRD 371 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +++ + I + + Sbjct: 372 IFMLHYNFPPFSVGETGRVGSPKRREIGHG----RLARRGVTAILPPESTFPYTIRVVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 428 ITESNGSSSMASVCGTSLALMDAGV-------------PVKTPVAGIAMGLVKEGERFTV 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G + +Q + +++ L AK ++++ Sbjct: 475 LSDILGDEDHLGDMDFKVAGSANG-VTALQMDIKIDGITREIMEQALTQAKAGRLHILEI 533 Query: 234 QKDVISNE 241 I+ Sbjct: 534 MNQAIAQP 541 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 83/229 (36%), Gaps = 27/229 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 +++L +++ A+G+ +V T +L TA T+ E + + + G +P Sbjct: 13 QVTLESGEIARQADGAVMVNMEGTVVLVTAVAKKTVAEGQDFFPLTVDYQEKSYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR + R+I R LR + Q+I + D Sbjct: 73 ---GGYFRRE---GRPSENETLVSRLIDRPLRPLFPEGFFNEVQVIASVMSVNPDISPDI 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA A+ G + A G G +++ E T D+ Sbjct: 127 PAMIGASAAIA-------------LSGVPFNGPIGAARVGYKNGAYLLNPSDKELQTSDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D T+ G ++ V+ A +D + +++ +I ++ Sbjct: 174 DLVVAGTE-GAVLMVESQANE--LPEDVMLGAVMYGHEQMQVVINAIRE 219 >gi|86152881|ref|ZP_01071086.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843766|gb|EAQ60976.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] Length = 719 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R IS+ + A GSCL G T L ATL + + +N Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL VD + I + Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYIIRLV 449 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + + A+ + Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAV---------LT 500 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G + +Q + Q+ L AK+ ++ + + Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559 Query: 236 DV 237 + Sbjct: 560 EA 561 Score = 84.8 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 87/242 (35%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L T EEK +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 72 YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + G I++ + GE +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNGELQNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D LNLA+ Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232 Query: 226 RI 227 I Sbjct: 233 AI 234 >gi|189501482|ref|YP_001957199.1| polynucleotide phosphorylase/polyadenylase [Candidatus Amoebophilus asiaticus 5a2] gi|226702593|sp|B3EU51|PNP_AMOA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189496923|gb|ACE05470.1| 3' exoribonuclease [Candidatus Amoebophilus asiaticus 5a2] Length = 713 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 16/230 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +RL GR+ +++R I A GS L G+T LTT TL K+ + + + Sbjct: 320 LRLDGRKLDEIRAIESEIDYLPAAHGSSLFTRGETQSLTTVTLGTKLDEQLIDRALLNGY 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y STG R+ G + RAL+ V+ L I I Sbjct: 380 SRFMLHYNFPSFSTGEVKFNRGPGRREIGHGH----LAMRALKKVLPLDTENPYTIRIVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A + +AL D + + + ++ + + D Sbjct: 436 DILESNGSSSMATVCAGSLALMDAGISIRSAVSGIAMGLLMDEQTGKHAI-------LSD 488 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED+ D+D T G I Q + + + L AK Sbjct: 489 ILGDEDALGDMDFKVAGTAKG-ITACQMDIKVSGLTPQLLQKALEQAKAG 537 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 28/238 (11%) Query: 10 QMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64 + REI++ K A+GS +V+ GDT LL T L+ V + ++ A G Sbjct: 14 EHREITIETGKLAKQADGSVVVRMGDTMLLATVVFKQELDPTVDFLPLHVEYQEKFAAAG 73 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G ++RE G+ G I R++ RA+R + + QI I Sbjct: 74 KIP---GGFLRRE---GKLGDHEVLISRLVDRAIRPLFPDNYKHETQINIFL-------- 119 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 I+ L + L + + +G ++ + + G +V+ Sbjct: 120 -----ISADPEILPESLAGLAASAALMISPIPFEGPISEVRVARIDGQFVVNPTQSALEK 174 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D+D V +I+ V+G E + A + A + I ++QK+ +++ V Sbjct: 175 ADIDL-MVGGSEKNILMVEG--EMDEVQEADIIAAIQFAHEAIKLQCQVQKE-LADAV 228 >gi|149193793|ref|ZP_01870891.1| polynucleotide phosphorylase/polyadenylase [Caminibacter mediatlanticus TB-2] gi|149135746|gb|EDM24224.1| polynucleotide phosphorylase/polyadenylase [Caminibacter mediatlanticus TB-2] Length = 725 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 93/246 (37%), Gaps = 22/246 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54 +R GR+ +++R IS+ V A GSCL G T L AT + + + Sbjct: 341 IRADGRKLDEIRPISIETNVLPRAHGSCLFTRGQTQALAVATRGGDMDAQVYANLTDKEE 400 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 K Y + G V+ G R + RA+ ++D + + Sbjct: 401 KLEKFMLHYNFPAFAVGEAVR----LGPPSRRELGHGNLAKRAIEPLLDPEF--DETVRV 454 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A I + +AL + + + V +G AI + Sbjct: 455 VSEILESNGSSSMATICASSIALKAAKVPLLKLAAGIAMGLVSEGEKYAI---------L 505 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D T G I +Q + + D L A++ A +++ Sbjct: 506 TDIMGLEDHDGDMDFKVAGTWDG-ITAMQMDIKLGGIALDILKEALYQAREARAFILEKM 564 Query: 235 KDVISN 240 ++ + N Sbjct: 565 ENAVEN 570 Score = 42.4 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 86/257 (33%), Gaps = 60/257 (23%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATL-------EEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 V++ A+ S + G+T +L T T E+ VP+ ++ + + G +P Sbjct: 21 VARQADSSIWWQEGNTVMLATLTYNPDEVIEEDFVPLVVQYVERAYA---VGKIP---AG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 VKRE + G R++ R+LR + + G I I + AD + + Sbjct: 75 FVKREQ---KPGDFETLTARIVDRSLRPLFPKN-FGYDTI-ITIMALSAD---EDSDLQV 126 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 A + +M S V + + G I + + D N Sbjct: 127 AAMNAAAACMYM--------SSLPFAKMVHGVRITRIDGEIIFNPTLSQLEKG--DFNLF 176 Query: 193 MTD-SGHIVEV----QGSAERA------------------------TFSQDHFFAMLNLA 223 +T ++ + QG E S+D +L A Sbjct: 177 VTGTKDELLMIEYASQGQEEVEIIPVEDIMLDGVPVENTIIKYKTNEISEDELIEILKKA 236 Query: 224 KDRIADLIKLQKDVISN 240 +++I + + + + N Sbjct: 237 QEKIKEGAETYESALKN 253 >gi|315932402|gb|EFV11345.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 720 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R IS+ + A GSCL G T L ATL + + +N Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL +D + I + Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSLDEN--YPYVIRLV 449 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + + + A+ + Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAV---------LT 500 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G + +Q + Q+ L AK+ ++ + + Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559 Query: 236 DV 237 + Sbjct: 560 EA 561 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ G + +L T EEK +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + R+I R+LR + QI++ V+ AD + ++ Sbjct: 72 YVKRET---KPSDAETLTARIIDRSLRPLFPKGYTYPTQIVV--MVLSADPKVDLQVMSL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + G I++ + E +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225 +V ++ ++ A E F S+D LNLA+ Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232 Query: 226 RI 227 I Sbjct: 233 AI 234 >gi|326389429|ref|ZP_08210996.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter ethanolicus JW 200] gi|325994434|gb|EGD52859.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter ethanolicus JW 200] Length = 700 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R+ GR + +R I V GS + G T +LT AT + ++ I + + Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL V+ I + Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ +AL D ++ + + +G V ++ + D Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + ++ L A+ ++ + Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILNKMLE 537 Query: 237 VISNE 241 VI Sbjct: 538 VIKEP 542 Score = 88.2 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + V++ A G+ VK+GDT +L TA E + + ++ G + Sbjct: 13 RKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q+I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL G A++ G++ G I++ ++ + Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSL 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T IV V+ A+ ++ + A + I +++ Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEIP--EETMLDAIMYAHEYIKQIVE 216 >gi|258511422|ref|YP_003184856.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478148|gb|ACV58467.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 735 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R IS + GS L G T L+ T +E++ + K Sbjct: 310 IRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A S R G + RAL V+ I + Sbjct: 370 NRYMHHYNFPPFSVGEAKPLRAPSRRDIGHG----ALGERALDPVIPSPEEFPYAIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G T A+I G+ +AL D ++ + V +G AI + D Sbjct: 426 EILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAI---------LSD 476 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G + +Q + + + L A++ ++ + Sbjct: 477 IQGIEDHLGDMDFKVAGTERG-VTALQMDIKISGIDRSILERALKQAREGRMYILSKMME 535 Query: 237 VISNE 241 IS Sbjct: 536 AISEP 540 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 74/223 (33%), Gaps = 26/223 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R L + A + V++G+T +L T T +++ + + G +P Sbjct: 12 RRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKELDFFPLTVNYEERLYAVGKIP 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + QI+ + D Sbjct: 72 ---GGFIKRE---GRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPEI 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G +L G + + G++ G +++ + D+ Sbjct: 126 AAMIGTSASL-------------TISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDL 172 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 T IV V+ A + ++ + I + Sbjct: 173 HLVVAGTKDA-IVMVEAGANQVP--EEIVLEAILYGHQVIQTI 212 >gi|134299798|ref|YP_001113294.1| polynucleotide phosphorylase/polyadenylase [Desulfotomaculum reducens MI-1] gi|187610295|sp|A4J5W6|PNP_DESRM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134052498|gb|ABO50469.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum reducens MI-1] Length = 740 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 99/249 (39%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +++R IS+ V G+ L G T +L+ ATL EE++ + + Sbjct: 324 LRIDGRAIDEIRPISVEVGVLPRTHGTGLFTRGQTQILSVATLGSISEEQILDGLGVEES 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + R+ G + RAL ++ + I + Sbjct: 384 KRYMHHYNFPPFSTGETKPMRSPGRREIGHG----ALAERALEPMIPPEEVFPYTIRVVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 + I+++G T ++ G+ ++L D LK VA ++ G++ Sbjct: 440 EAIESNGSTSMGSVCGSTLSLMDAGV-------------PLKAPVAGVAMGLIMEEDQFT 486 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D + +G + +Q + +++ F L A ++ Sbjct: 487 VLTDIQGLEDHLGDMDFKVAGSANG-VTALQMDIKIPGITREVFEQALEQAHRGRMFILG 545 Query: 233 LQKDVISNE 241 +V+S Sbjct: 546 KMLEVLSTP 554 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 26/225 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R ++L K A G+ LV +G+T +L TAT+ + + + G +P Sbjct: 16 RTLTLETGRMAKQASGAVLVTYGETVVLVTATVAKNTRDIDFFPLTVDYEERLYAVGKIP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D Sbjct: 76 ---GGFIKRE---GRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVMSVDQDNAPEI 129 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ GA ALH LK + + G + G +++ + D+ Sbjct: 130 AAMIGASAALH-------------ISKIPLKKPIGGVIVGRVDGQFVINPMVRQAENSDM 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 TD ++ V+ A+ + + +++ +++K Sbjct: 177 HLVVAGTDDA-VMMVEAGAKEVP--ESEMLEGIMYGHEKVKEIVK 218 >gi|284044685|ref|YP_003395025.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM 14684] gi|283948906|gb|ADB51650.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM 14684] Length = 761 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR+ +++R I++ V+ GS L G T L+TA+L EE + Sbjct: 316 RPDGRRADEIRPITIEVGVTPRTHGSALFTRGQTQALSTASLGTTREEMRLDTLGLETRK 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y P S G R G + RAL +V + I + D Sbjct: 376 YYFHHYNFPPFSVGEAGFMRGPKRRDIGHG----ALAERALVPMVPSTEEFPYAIRVVSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 +++++G + A++ G+ ++L D LK VA I+ G++ Y + Sbjct: 432 ILESNGSSSMASVCGSSLSLMDAGV-------------PLKRPVAGIAMGLIKEGDDYIV 478 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + D L AK+ ++ Sbjct: 479 LSDIAGIEDHLGDMDFKVAGTSEG-ITALQMDIKITGVTFDILRDALAQAKEGREFILGK 537 Query: 234 QKDVISNE 241 ++ Sbjct: 538 MATALAKP 545 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 83/225 (36%), Gaps = 24/225 (10%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGWITAEYGMLPRS 69 EIS K A G+ +V+ GDT +L+TAT V G +P Sbjct: 16 EISFETGRMAKQASGAVVVRSGDTMVLSTATAGNLRDVDFLPLTVDVEERMYAAGKIP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G+ KRE GR G ++ RM+ R +R + Q++ + + A Sbjct: 74 -GSFFKRE---GRAGEKATLTARMVDRPIRPLFPKGWRRETQLVTLTLSVDHEHPYDVLA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + GA AL V ++ G + G +V+ + ED + D Sbjct: 130 MNGASAAL-------------MISDIPFPTPVGSVRIGKVDGNFVVNPN-EEDLLENTDL 175 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + ++ + + + + + L++A D I L +LQ Sbjct: 176 DLIVAGTEEAILMVEAG-ANEIPEAEILDALDIAHDAIKKLCRLQ 219 >gi|218290095|ref|ZP_03494257.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius LAA1] gi|218239804|gb|EED06993.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus acidocaldarius LAA1] Length = 735 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R IS + GS L G T L+ T +E++ + K Sbjct: 310 IRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A S R G + RAL V+ I + Sbjct: 370 NRYMHHYNFPPFSVGEAKPLRAPSRRDIGHG----ALGERALDPVIPSPEEFPYAIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G T A+I G+ +AL D ++ + V +G AI + D Sbjct: 426 EILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAI---------LSD 476 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G + +Q + + + L A++ ++ + Sbjct: 477 IQGIEDHLGDMDFKVAGTERG-VTALQMDIKISGIDRSILERALKQAREGRMYILSKMME 535 Query: 237 VISNE 241 IS Sbjct: 536 AISEP 540 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 74/223 (33%), Gaps = 26/223 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R L + A + V++G+T +L T T +++ + + G +P Sbjct: 12 RRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKELDFFPLTVNYEERLYAVGKIP 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + QI+ + D Sbjct: 72 ---GGFIKRE---GRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPEI 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G +L G + + G++ G +++ + D+ Sbjct: 126 AAMIGTSASL-------------TISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDL 172 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 T IV V+ A + ++ + I + Sbjct: 173 HLVVAGTKDA-IVMVEAGANQVP--EEIVLEAILYGHQVIQTI 212 >gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens] gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens] Length = 240 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 9/242 (3%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR + + A GS ++ +T ++ +V + Sbjct: 1 MRKDYQLPKFYDRLVCRTGAVSQAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVA 60 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 E S R +R + Q + +E ++I +AL+ VV L QI I V+Q Sbjct: 61 CELKFATFSC--RRRRRHI---QDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQ 115 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG AIT A VAL D + D + L Q+ + + G L+ Sbjct: 116 NDGSVLGGAITAASVALADSGIEIFDVAIGCCLRQIGDLSLIDPTYLEEEGR----LNNE 171 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 E+ I +AN + + +V D ++ + + + ++ ++ Sbjct: 172 EEDEIVTNANVTIALLPSLNQVSALIMNGELDVDSTQRIIKDCLEGCIRIYPVVRECLTK 231 Query: 241 EV 242 + Sbjct: 232 SL 233 >gi|163783568|ref|ZP_02178558.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp. 128-5-R1-1] gi|159881188|gb|EDP74702.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp. 128-5-R1-1] Length = 773 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 87/250 (34%), Gaps = 25/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55 +R+ GR+ ++R IS+ + G + G T T TL + Sbjct: 310 VRIDGRKPEEIRPISIEIHPFERPHGCAVFTRGQTQAYVTVTLGAPDEAQLIETIAEGEV 369 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G R+ G + RAL V+ I + Sbjct: 370 FKRFMLHYNFPPFSGGEARSWGPPRRREIGHG----ALAERALEPVIPEEDDFPYIIRVV 425 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 D+++++G T A + G +AL D ++ HV+ I+ G++ Sbjct: 426 SDILESNGSTSMATVCGGSLALFDAGVPIKGGK-----------HVSGIAMGLIKEGDRY 474 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + +Q + +++ L AK+ ++ Sbjct: 475 VILSDILGDEDHLGDMDFKVAGTREG-VTSIQMDIKIKGITKEIMTEALKQAKEGRLYIL 533 Query: 232 KLQKDVISNE 241 + + I Sbjct: 534 EKMYEAIPEP 543 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 33/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67 I + +K A+G+ +V+ G T +L TA + ++ I T + + YG +P Sbjct: 13 PIVIEVGRYAKQADGAVVVRQGGTAVLVTAVMSDEPNTEIDFTPLTVDYRERPSAYGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--T 125 G VKRE G+ R R+I R LR + +++ + AD Sbjct: 73 ---GGFVKRE---GKPSEREVLASRVIDRPLRPLFPEGFFHD--VVVTALTLSADDNYDP 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AITGA ALH +G +A + + G + + Y E Sbjct: 125 DVLAITGASAALH-------------ISRIPFEGPIAGVRVCKVGGEFVANPTYEERK-- 169 Query: 186 DVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D D VM IV V+G A+ ++ L + I + I LQ+ Sbjct: 170 DADLEIVMAGTKDAIVMVEGGAKEVP--EEVITEALFFGHEAIQEAIALQEK 219 >gi|77919161|ref|YP_356976.1| polynucleotide phosphorylase/polyadenylase [Pelobacter carbinolicus DSM 2380] gi|123574179|sp|Q3A4A1|PNP_PELCD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77545244|gb|ABA88806.1| polynucleotide phosphorylase/cytidylate kinase [Pelobacter carbinolicus DSM 2380] Length = 699 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56 +R+ GR +N +R I+ + A GS L G+T L A + +E+ +++ + Sbjct: 312 VRIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTSKDEQRMDNVQSMEF 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G R R+ G + R++ V+ + + Sbjct: 372 KKFMLHYNFPPFCVGETSMRLFPGRREIGHGM----LAERSIAQVLPNHDDFPYTLRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 D+++++G + A++ GA +AL D + VA I+ G++ Sbjct: 428 DILESNGSSSMASVCGASLALMDAGV-------------PVSEAVAGIAMGLIKEGDDIV 474 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S++ L A++ ++ Sbjct: 475 VLSDILGDEDHLGDMDFKVTGTREG-ITALQMDIKIKGVSKEIMQQALEQAREGRLHILD 533 Query: 233 LQKDVI 238 + I Sbjct: 534 KMAEAI 539 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 88/232 (37%), Gaps = 29/232 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + A+G+ +V FG T +L TA + E + + G +P Sbjct: 15 LTLETGKMARQADGAVVVSFGGTKVLCTAVSAKQMREGQSFFPLTVNYQEKFYAGGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE + R + R+I R LR + + QI+ + T Sbjct: 74 --GSFFRRERGA---TERETLVCRLIDRPLRPLFPKGYMFETQIMPTVISVDEQNDPDTL 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA A+ G VAA+ G + G I + + + D Sbjct: 129 AMVGASAAIA-------------VSDIPFDGPVAAVRVGRVEGNLIANPTI--EQRAESD 173 Query: 189 ANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + +++ S I+ V+G E S+ L A + I LI +Q +++ Sbjct: 174 MDIIVSGSRDAIIMVEG--ETRFISEQEMLDALFFAHEAIQPLIDVQLELVK 223 >gi|222055786|ref|YP_002538148.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32] gi|257096693|sp|B9M1G5|PNP_GEOSF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221565075|gb|ACM21047.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32] Length = 696 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R+I+ + A GS L G+T L ATL + ++ G Sbjct: 312 RIDGRDTKTIRQITTEVGLLPRAHGSALFTRGETQALVVATLGTSIDEQRIDSLFGESKK 371 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R A R+ G + RAL VV I I D Sbjct: 372 RFLLHYNFPPFSVGETSFRLAPGRREIGHGM----LAERALARVVPKHESFPYTIRIVSD 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++++G + A++ G +++ D +K VA I+ G++ Sbjct: 428 ILESNGSSSMASVCGGSMSMMDAGI-------------PIKAPVAGIAMGLIKEGDDFAI 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ L A + ++ Sbjct: 475 LSDILGDEDHLGDMDFKVAGTSTG-VTALQMDIKIGGVTREIMGVALKQAHEGRLHILSK 533 Query: 234 QKDVISN 240 + I Sbjct: 534 MAETIGT 540 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 82/228 (35%), Gaps = 27/228 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A G+ +V GDT +L TA T +E + + G + Sbjct: 12 RTITIETGKMAKQASGAVVVSSGDTRVLVTAVATKTAKEGQDFFPLTVNYQEKAYAGGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KREA R R+I R +R + + L QI+ D Sbjct: 72 P---GGFFKREA---RPSDNETLTCRLIDRPIRPLFPDNFLNDTQIMATVISADKDNDPG 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ GA AL +G +A + G + G + + + E D Sbjct: 126 ILSMVGASAAL-------------MVSDIPFQGPIAGVKVGRIDGRFVANPGFEEMEKSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ++ V I+ V+GSA A S++ + I L+ Q Sbjct: 173 IEI-VVAASKDAIIMVEGSA--AEVSEEDMLEAIFFGHAAIQGLLAAQ 217 >gi|284036900|ref|YP_003386830.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM 74] gi|283816193|gb|ADB38031.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM 74] Length = 708 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 91/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR+ +Q+R+IS GS L G+T LTT TL K I + + Sbjct: 318 RLDGRKLDQIRQISAEAGYLPGPHGSALFTRGETQSLTTVTLGTKTDEQIVDQTMFQGYS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y STG R+ G + R+L+ V+ + I I D Sbjct: 378 KFLLHYNFPGFSTGEVKPNRGAGRREIGHG----NLAHRSLKKVLPPAEENPYTIRIVSD 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A + +AL D ++ + + G A+ + D+ Sbjct: 434 ILESNGSSSMATVCAGTMALMDAGIKIKAPVAGIAMGLISDGDKYAV---------LSDI 484 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G IV Q + S + L A+ ++ K Sbjct: 485 LGDEDHLGDMDFKVTGTEKG-IVACQMDLKVDGLSYEVLAQALEQARVGRLHILGEMKKG 543 Query: 238 ISN 240 IS+ Sbjct: 544 ISD 546 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 86/239 (35%), Gaps = 33/239 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 G REI++ + A+G+ +V+ GDT LL T +E V + + Sbjct: 12 PDG------REITIETGKLARQADGAVVVRLGDTMLLATVVSSKDAKEGVDFLPLSVDYQ 65 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A G +P G+ +RE GR G I R++ RALR + + Q++I Sbjct: 66 EKFASAGRIP---GSFQRRE---GRLGDHEILISRLVDRALRPIFPDNYHADTQVMITL- 118 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 I+ D L + S G ++ + + G ++ Sbjct: 119 ------------ISADPEVQPDALAALAASSALAVSDIPFNGPISEVRVAKIDGQYKINP 166 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E +D T+ I V+G E S+ L +A + I + QK+ Sbjct: 167 KTAELERATIDLIVAATEKD-ICMVEG--EMDECSEAEVVEALKVAHEAIKIQCQAQKE 222 >gi|223985743|ref|ZP_03635787.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM 12042] gi|223962253|gb|EEF66721.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM 12042] Length = 731 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R ++ + GS + G+T ++ T A + ++ + + Sbjct: 318 IRPDGRAVDELRPLNSQVDLLPRVHGSAMFTRGETQVMSACTLGALGDNQIIDDLTEIET 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + RAL +V+ I + Sbjct: 378 KRFMHHYNFPPYSVGETGR----MGSPGRREIGHGALGERALSAVIPSEEEFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 +V++++G + A+I +AL +K VA ++ G++ Sbjct: 434 EVLESNGSSSQASICAGTMALMSAGV-------------PIKAPVAGVAMGLIKTSDEHY 480 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + ++ L AK A+++ Sbjct: 481 TVLTDIQGMEDHYGDMDFKVAGTPKG-ITALQMDIKIDGINRAILEEALAQAKKGRAEIM 539 Query: 232 KLQKDVISNE 241 IS Sbjct: 540 ANMMAAISEP 549 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 28/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R +++ ++K A G+ +V++ DT +L+TAT +++ +T + S Sbjct: 13 RNLTIETGEIAKQAGGAVVVRYQDTVVLSTATANHT----PKDSDFFPLTVSFEEKLYSV 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G ++RE GR + RMI R +R + Q++ + D Sbjct: 69 GKIPGGFLRRE---GRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDCSAE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G +A + G + G +++ E D Sbjct: 126 MAAMFGASCALC-------------ISDIPFNGPIAGVIVGRVDGKFVINPSVEESEKSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T I V+ A+ S++ L D I L + Q+ +I+ Sbjct: 173 IHLTVAGTKDA-INMVEAGAKE--VSEEEMIDALMFGHDHIKMLCEFQEQIIAK 223 >gi|56460072|ref|YP_155353.1| polynucleotide phosphorylase/polyadenylase [Idiomarina loihiensis L2TR] gi|81363045|sp|Q5QYE1|PNP_IDILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56179082|gb|AAV81804.1| Polynucleotide phosphorylase [Idiomarina loihiensis L2TR] Length = 716 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR + +R IS+ V GS L G+T L TATL + Sbjct: 314 RIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRDAQMIDELTGMNTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R +++V+ I + + Sbjct: 374 RFMLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGIQAVMPSHDEFPYTIRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKSSVAGIAMGLVKEGDKHVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D G I +Q + ++D + L AK ++K+ Sbjct: 477 LSDILGDEDHLGDMDFKVAGNTDG-ITALQMDIKIDGITRDIMESALAQAKSARLHILKV 535 Query: 234 QKDVISNE 241 + I Sbjct: 536 MDEAIGGH 543 Score = 69.0 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 71/225 (31%), Gaps = 27/225 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A S L DT +L T E + + T G +P Sbjct: 15 VTLETGVIARQATASVLASIDDTTVLVTVVAKKEAREGQNFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q++ + Sbjct: 74 --GGFFKRE---GRPSENETLTCRLIDRPIRPLFPDGFMNEVQVVATVVSVNPQINPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G++ +++ E +D Sbjct: 129 ALIGTSAALS-------------ISGVPFAGPIGAARVGVVNDEYVLNPTADELENSKLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 TD ++ +E S+D + + + D+IK Sbjct: 176 LVVAGTDKAVLMV---ESEAQLLSEDQMLGAVMYGHEAMQDVIKA 217 >gi|71665831|ref|XP_819881.1| ribosomal RNA processing protein 41A [Trypanosoma cruzi strain CL Brener] gi|70885202|gb|EAN98030.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi] Length = 252 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 18/182 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +RL GR+ + R ++L +G C V G + + +V + + I Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T E + + R R+ S+E+ + RSVV LS + QI I +V+ Sbjct: 73 TCEVAIAAFAGEKRR----APQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + DG + A I A +AL D M D V A + G++ +VDL Sbjct: 129 RQDGSDKAACINAACLALVDACVAMRDI-------------VYAQTVGLIHAVDVVDLTT 175 Query: 180 GE 181 E Sbjct: 176 EE 177 >gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17] gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17] Length = 773 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR Q+R I A GS L G+T + T TL K + + +G Sbjct: 314 RIDGRSTTQIRPIESEVHFLPRAHGSALFTRGETQTIATTTLGTKDAEQMIDGLNGLSYQ 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G ++ RAL V+ I + D Sbjct: 374 HFMLHYNFPPYSVGEVGRFGAPGRREIGHG----KLAWRALHPVLPSKEEFPYTIRVTSD 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G ++L D ++ + + +L+G AI + D+ Sbjct: 430 ITESNGSSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEGKDYAI---------LSDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ F A L AKD A ++ Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITKEIFEAALAQAKDGRAHILGEMNKA 539 Query: 238 ISN 240 + Sbjct: 540 LGE 542 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 29/226 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++L V++ A+G+ + G+T +L T + V +T Y S+ Sbjct: 16 LTLETGKVARQADGAVIATLGETVVLCAVTAAKNV---KEGQDFFPLTVHYQ-EKFSSAG 71 Query: 73 RVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128 R+ +G R I R+I R +R + I V+ DG Sbjct: 72 RIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNE--INCIAQVLSYDGENEPDIL 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ A AL G + A G G ++ E ++D Sbjct: 130 AMIAASAAL-------------TISGVPFMGPIGAARVGYKNGEYQLNPSDSEVLEGELD 176 Query: 189 ANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 T D+ +VE +E S++ + A +I+ Sbjct: 177 LVVAATHDAVMMVE----SEAKELSEEVMLGAVMFAHKASGQVIEA 218 >gi|312879870|ref|ZP_07739670.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans DSM 12260] gi|310783161|gb|EFQ23559.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans DSM 12260] Length = 756 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 22/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKV--PMWIRNTK 55 R GR+ +++R I + A GS L G+T L T E+ + Sbjct: 312 RADGRKMDELRPICCETGLLPKAHGSALFTRGETQSLAVTTLGMVGEDDQILDGLKHDEP 371 Query: 56 HGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y P S G R R G R + RALR + A + + Sbjct: 372 SKRFLLHYNFPPYSVGEVRPMRG-----PGRREIGHGALAERALRPMFPDEAAFPYVVRV 426 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 D+++++G + A++ G +++ D ++ + V G + Sbjct: 427 VSDILESNGSSSMASVCGGSLSMMDAGVPLKKAVAGVAMGLVTDGSRV---------RIL 477 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D T G + +Q + ++ L+ A++ ++ + Sbjct: 478 TDIQGLEDHYGDMDFKVTGTRDG-VTALQMDNKAGGITRAILEQALSQAREGRMKILDIM 536 Query: 235 KDVI 238 + Sbjct: 537 DGAL 540 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 75/226 (33%), Gaps = 27/226 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +S K A S ++G+T +L T+ L E + + + G + Sbjct: 12 RTLSFETGKMAKQANASVFARYGETVILVTSVLAEKAREGLDFFPLLVDYEERFYSAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + RM+ R++RS+ ++ + Sbjct: 72 P---GGFIKRE---GRPSETAILSGRMVDRSIRSLFPDYLRNDVHVVATVLSVDQQNAPN 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI + +G + A+ G L G +V+ E Sbjct: 126 VLAIN-------------AASAALALSDIPWEGPIGAVRIGCLDGNLVVNPTEQEIPLST 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 +D V G I V+ A+ S+ L LA I ++ Sbjct: 173 LDL-LVAGHEGGITMVEAGAQE--VSEALLVDALELAHREIRRIVA 215 >gi|284047833|ref|YP_003398172.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus fermentans DSM 20731] gi|283952054|gb|ADB46857.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus fermentans DSM 20731] Length = 690 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL---LTTATLEEKVPMW-IRNTKH 56 +R GR +++R IS + G L G T + L A L E + + Sbjct: 310 IRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREAQNLETLAGDIQ 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G + RAL V+ I + Sbjct: 370 KRYIHHYNFPPYSVGETKPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRLVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+ + ++L D +K V+ ++ G++ Sbjct: 426 EVLESNGSSSMASTCASTLSLMDAGV-------------PIKAPVSGVAMGLVKEGENFT 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + ++D A L AK A ++ Sbjct: 473 ILTDIQGLEDANGDMDFKVAGTSKG-ITAIQMDIKVDGLTKDILQAALAQAKKGRAFILG 531 Query: 233 LQKDVISNE 241 + I+ Sbjct: 532 KMLECIAEP 540 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 87/230 (37%), Gaps = 27/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +++ ++K A G+ LV++G+T ++ AT E V + G + Sbjct: 11 RTLTIETGKIAKQANGAVLVRYGETAVVVAATGTDTPREGVDFFPLTVDFEEKMYAVGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR + R+I R +R + QI+ + D Sbjct: 71 P---GGFLRRE---GRPAETAILTSRLIDRPIRPMFPDGYHNDVQIVCTAVSVDPDNAPD 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL +G +A + G++ G IV+ + + Sbjct: 125 IPAMIGASCALS-------------ISDIPFEGPIAGVRVGLIDGQFIVEPTVEQAKVSE 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ T I+ V+ A+ S++ + A I L++ Q+ Sbjct: 172 LNLAVAGTKDA-ILMVEAGAKE--VSEEVMLDAIWFAHGEIKKLVEFQEK 218 >gi|150021487|ref|YP_001306841.1| polynucleotide phosphorylase/polyadenylase [Thermosipho melanesiensis BI429] gi|187611329|sp|A6LNF5|PNP_THEM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149794008|gb|ABR31456.1| Polyribonucleotide nucleotidyltransferase [Thermosipho melanesiensis BI429] Length = 699 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKH 56 +R GR ++R I+ V GS L G+T + A +EE++ I Sbjct: 321 IRADGRTPEEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEGT 380 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL++V + + Sbjct: 381 KRFILHYNFPPFSVGEVKPLRGPGRREIGHGH----LAERALKAVAPDEEDFPYVVRVVS 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++++++G + A + +AL D +K HVA ++ G++ Sbjct: 437 EILESNGSSSMATVCSGSLALMDAGV-------------PIKTHVAGVAMGLIVDEENEV 483 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T +G I Q + A ++ L A+ ++ Sbjct: 484 VLTDIQGLEDHWGDMDFKVAGTRNG-ITAFQMDCKIAGVGEELLKKALKQARVARMRILD 542 Query: 233 LQKDVISNE 241 + + I Sbjct: 543 IMFETIKEP 551 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 33/237 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 R++++ V+K + G+ V+FGD+ +L TA + ++V I +T EY Sbjct: 14 RKLTIQYGKVAKQSSGAAWVQFGDSVVLATANISDRV---IEGVDFVPLTVEYQEKFYAA 70 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G +KRE G+ + R+I R +R + Q+I+ + D Sbjct: 71 GKIP---GGFIKRE---GKPTESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGDT 124 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 I A +AL+ +G VA + G + G ++ + Sbjct: 125 PPDVTGIFAASLALN-------------FSKIPFQGIVAGVRIGYVDGEFVIFPTEEQLK 171 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D V I V+G A+ +++ L +A + I LI+ +++++ Sbjct: 172 NSKLDI-VVAGSKDAITMVEGEAKE--VTEEEMVQALMVAHEAIKKLIEFEEEILRE 225 >gi|167037615|ref|YP_001665193.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116030|ref|YP_004186189.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|257096712|sp|B0K9P4|PNP_THEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|166856449|gb|ABY94857.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929121|gb|ADV79806.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 700 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R+ GR + +R I V GS + G T +LT AT + ++ I + + Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL V+ I + Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ +AL D ++ + + +G V ++ + D Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + ++ L A+ ++ + Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLE 537 Query: 237 VISNE 241 VI Sbjct: 538 VIKEP 542 Score = 88.2 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + V++ A G+ VK+GDT +L TA E + + ++ G + Sbjct: 13 RKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q+I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL G A++ G++ G I++ ++ + Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSL 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T IV V+ A+ ++ + A + I +++ Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEIP--EETMLDAIMYAHEYIKQIVE 216 >gi|319892292|ref|YP_004149167.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|317161988|gb|ADV05531.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius HKU10-03] Length = 697 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R +S + A GS L G T L+ TL E ++ + +H Sbjct: 318 IRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQIIDGLGEEEH 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RALR ++ + I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDEKTFPYTVRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREESYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + +++ L A+ +++ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTTEG-ITAIQMDIKIDGLTKEVIEEALEQARKGRLAILE 539 Query: 233 LQKDVISNE 241 I Sbjct: 540 HMMQTIDQP 548 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 93/234 (39%), Gaps = 32/234 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68 +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 16 PLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TR 126 G KRE GR G + R+I R +R + QII V+ AD Sbjct: 75 --GGFKKRE---GRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINT--VLSADPNCSPE 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +AL +G +A ++ G + G +++ + + Sbjct: 128 MAAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSR 174 Query: 187 VDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +D D+ ++VE A + ++ + + I L Q+++I+ Sbjct: 175 LDLEVAGHKDAVNMVE----AGASEITEAEMLEAILFGHEEIKRLCAFQEEIIA 224 >gi|119356388|ref|YP_911032.1| polynucleotide phosphorylase/polyadenylase [Chlorobium phaeobacteroides DSM 266] gi|187610253|sp|A1BDY1|PNP_CHLPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119353737|gb|ABL64608.1| Polyribonucleotide nucleotidyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 732 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR +++R IS+ + A GS L G+T L T TL K + ++ Sbjct: 332 RLDGRTLDEIRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDTLTDSADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G + R+++ V I I D Sbjct: 392 RFMLHYNFPPFSVGETGRVGGTGRREIGHG----NLAERSIKMVSPSETDFPYTIRIVSD 447 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +AL D + + + + +G ++ + D+ Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKEGDAYSV---------LSDI 498 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I Q + L A+ ++ + Sbjct: 499 LGNEDHLGDMDFKVAGTEDG-ITACQMDIKIDGLDYHILETALEQARKGRLHILDKMEVA 557 Query: 238 I 238 I Sbjct: 558 I 558 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 22/227 (9%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPRST 70 +S+ K A+G+ LV+ GDT +L T + P ++ +Y + Sbjct: 15 LSIETGKMAKQADGAALVRLGDTMVLATVVSSKTPPPANQDYFPLQVEYREKYSAAGKFP 74 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I RALR + L QII+ V +D A + Sbjct: 75 GGFFKRE---GRPSEKEILTARLIDRALRPLFPDGYLFETQIIVT--VFSSD-QINDADV 128 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 G A + ++ + G + G IV+ + E D+D Sbjct: 129 LGGVAA----------SAAIMVSDIPFHNSMSEVRVGRINGEFIVNPNINELQGSDIDIC 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 T + I ++G E S+ + + I + LQ ++ Sbjct: 179 IGGT-ANTICMLEG--EMKEISEAEMLDAIKFGHEAIRKICALQDEM 222 >gi|76789587|ref|YP_328673.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis A/HAR-13] gi|237803274|ref|YP_002888468.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis B/Jali20/OT] gi|123606542|sp|Q3KKJ7|PNP_CHLTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|76168117|gb|AAX51125.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis A/HAR-13] gi|231274508|emb|CAX11304.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 695 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R+ GR ++R IS+ GSCL G+T + T E + + Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL V+ ++ I ++ Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + L AK + ++ Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535 Query: 233 LQKDVISNE 241 L V+++ Sbjct: 536 LMTQVLASP 544 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 85/235 (36%), Gaps = 33/235 (14%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ LVK +T + A+L E V + ++ R++G Sbjct: 18 FETGKIARQASGAILVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR R + R+I R+LR + Q++ DG T A Sbjct: 75 GFLKRE---GRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I GA AL +A + G++ G +++ E S +D Sbjct: 130 ICGASAALA-------------ISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241 T S ++ ++G +++ + + IA + I+ + + Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQ 228 >gi|167040276|ref|YP_001663261.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter sp. X514] gi|256750798|ref|ZP_05491683.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter ethanolicus CCSD1] gi|300914360|ref|ZP_07131676.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp. X561] gi|307724404|ref|YP_003904155.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp. X513] gi|257096713|sp|B0K1D0|PNP_THEPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|166854516|gb|ABY92925.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp. X514] gi|256750381|gb|EEU63400.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter ethanolicus CCSD1] gi|300889295|gb|EFK84441.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp. X561] gi|307581465|gb|ADN54864.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp. X513] Length = 700 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R+ GR + +R I V GS + G T +LT AT + ++ I + + Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL V+ I + Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ +AL D ++ + + +G V ++ + D Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + ++ L A+ ++ + Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLE 537 Query: 237 VISNE 241 VI Sbjct: 538 VIKEP 542 Score = 88.2 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + V++ A G+ VK+GDT +L TA E + + ++ G + Sbjct: 13 RKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q+I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL G A++ G++ G I++ ++ + Sbjct: 127 IVAMIGSSVALS-------------ISDIPFDGPTGAVAVGLVDGQFIINPNHEQREKSL 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T IV V+ A+ ++ + A + I +++ Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEVP--EETMLDAIMYAHEYIKQIVE 216 >gi|255349247|ref|ZP_05381254.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis 70] gi|255503784|ref|ZP_05382174.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis 70s] Length = 695 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R+ GR ++R IS+ GSCL G+T + T E + + Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL V+ ++ I ++ Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + L AK + ++ Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535 Query: 233 LQKDVISNE 241 L V+++ Sbjct: 536 LMTQVLASP 544 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 33/235 (14%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ LVK +T + A+L E V + ++ R++G Sbjct: 18 FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR R + R++ R+LR + Q++ DG T A Sbjct: 75 GFLKRE---GRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I GA AL VA + G++ G +++ E S +D Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241 T S ++ ++G +++ + + IA + I+ + I + Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228 >gi|255317984|ref|ZP_05359230.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis 6276s] Length = 695 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R+ GR ++R IS+ GSCL G+T + T E + + Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL V+ ++ I ++ Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + L AK + ++ Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535 Query: 233 LQKDVISNE 241 L V+++ Sbjct: 536 LMTQVLASP 544 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 33/235 (14%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ LVK +T + A+L E V + ++ R++G Sbjct: 18 FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR R + R++ R+LR + Q++ DG T A Sbjct: 75 GFLKRE---GRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I GA AL VA + G++ G +++ E S +D Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241 T S ++ ++G +++ + + IA + I+ + I + Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228 >gi|15605577|ref|NP_220363.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis D/UW-3/CX] gi|81345334|sp|O84849|PNP_CHLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|3329314|gb|AAC68439.1| Polyribonucleotide Nucleotidyltransferase [Chlamydia trachomatis D/UW-3/CX] gi|296436398|gb|ADH18572.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis G/9768] gi|296437329|gb|ADH19499.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis G/11222] gi|296438257|gb|ADH20418.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis G/11074] gi|297140758|gb|ADH97516.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis G/9301] gi|297748970|gb|ADI51516.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis D-EC] gi|297749850|gb|ADI52528.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis D-LC] Length = 695 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R+ GR ++R IS+ GSCL G+T + T E + + Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL V+ ++ I ++ Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + L AK + ++ Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535 Query: 233 LQKDVISNE 241 L V+++ Sbjct: 536 LMTQVLASP 544 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 33/235 (14%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ LVK +T + A+L E V + ++ R++G Sbjct: 18 FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR R + R++ R+LR + Q++ DG T A Sbjct: 75 GFLKRE---GRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I GA AL VA + G++ G +++ E S +D Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241 T S ++ ++G +++ + + IA + I+ + I + Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228 >gi|255507465|ref|ZP_05383104.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis D(s)2923] gi|289525888|emb|CBJ15370.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis Sweden2] gi|296435474|gb|ADH17652.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis E/150] gi|296439191|gb|ADH21344.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis E/11023] Length = 695 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R+ GR ++R IS+ GSCL G+T + T E + + Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL V+ ++ I ++ Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + L AK + ++ Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535 Query: 233 LQKDVISNE 241 L V+++ Sbjct: 536 LMTQVLASP 544 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 33/235 (14%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ LVK +T + A+L E V + ++ R++G Sbjct: 18 FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR R + R++ R+LR + Q++ DG T A Sbjct: 75 GFLKRE---GRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I GA AL VA + G++ G +++ E S +D Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASRLDL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241 T S ++ ++G +++ + + IA + I+ + I + Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIVFGQTYIAKICDAIEAWQKAIGKQ 228 >gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis M23590] gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis M23590] Length = 698 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQIIDGLGPEQE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID 115 Y S G A R+ G + RALR ++ D S I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRHIIPDTSKFP-YTIRIV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 433 SEVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSY 479 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + +++ L A+ Sbjct: 480 TILTDIQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARKG 533 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TA + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + D I L++ Q+ ++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHDEIKRLVEFQQQIV 223 >gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein [Aedes aegypti] Length = 307 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 18/184 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR++N+ R+ + V A+GS ++ G+T ++ + ++P + G + Sbjct: 42 RKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYC 101 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 ++ P + +R + + RS + + +AL+ VV + QI I +V++ Sbjct: 102 DFKFSPFACIHRKNPQTDA---EERS--LAAAMTKALQPVVCRHLFPNFQIDIFANVLED 156 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG A IT A +AL D M D V A + ++ +D E Sbjct: 157 DGSVLAAVITAAGLALSDATISMFDI-------------VTASTVAVIEDKIYLDPTLAE 203 Query: 182 DSTI 185 + Sbjct: 204 ERLC 207 >gi|329766295|ref|ZP_08257842.1| exosome complex RNA-binding protein Rrp42 [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137197|gb|EGG41486.1| exosome complex RNA-binding protein Rrp42 [Candidatus Nitrosoarchaeum limnia SFB1] Length = 271 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 91/251 (36%), Gaps = 22/251 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++ R++ + A GS V+ GD+ ++ ++ P + G Sbjct: 24 RVDGRALDEPRQLVIEVNAIPKANGSARVRLGDSEVVCGVKIQPDRP-FPDMGDKGIFIC 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115 +LP S + +G G E+ R++ R +R ++DLS L + + Sbjct: 83 TAELLPLSHPS-----VETGPPGPDVIELARVVDRGIRESHMIDLSQLVIEKNKSVVGVF 137 Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSN-------KFQLSQVLKGHVAAISC 166 D V+ DG A A AL + N + + +++ Sbjct: 138 ADNVVVDYDGNLFDACAYAATAALLSSKSPKWEMQNDVPTLVEGGESEVPITTIPVSVTM 197 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G + + IVD + E ++D +G+I +Q FS + L+ Sbjct: 198 GKIGNHIIVDPNGDEWDSMDARITITTDSNGNICALQKGGIGG-FSFEEVIKCGELSVKV 256 Query: 227 IADLIKLQKDV 237 + + + K Sbjct: 257 GSKIREKLKQA 267 >gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria sp. WGA-A3] gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria sp. WGA-A3] Length = 700 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R GR + +R I+ + GS L G+T L TL + G Sbjct: 311 VRADGRGASDIRPITCETSILPRTHGSALFTRGETQSLAVVTLGTSDDEQRIDALEGEYF 370 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G ++ RAL+SV+ I I Sbjct: 371 RNFMLHYNFPPFSVGEARPLRSPGRREVGHG----KLAERALKSVLPDKEAFPYTIRIVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIV 175 D+++++G + A + G +A+ D +K VA I+ G++ G ++ Sbjct: 427 DILESNGSSSMATVCGGTLAMMDAGV-------------PIKKPVAGIAMGLIKDGDRVL 473 Query: 176 ---DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D+ ED D+D T G I +Q + + D L A+ +++ Sbjct: 474 ILSDILGLEDHLGDMDFKVTGTQEG-ITALQMDIKIEGITIDLMRQALEQARAGRIHILE 532 Query: 233 LQKDVISNE 241 ++ +S+ Sbjct: 533 KMQESLSSP 541 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 76/227 (33%), Gaps = 29/227 (12%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L A+G+ L +GDT +L TA L+ V + G + Sbjct: 12 RTMRLETGRMAKLADGAVLASYGDTMVLATAVSSKILKPDVDFLPLTVNYLEKAYSAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G + R+I R +R ++ Q+I + + Sbjct: 72 P---GGYFKRE---GAPSEKETLTSRLIDRPIRPLIPKGFSYETQVIASVLSVDQSMTSE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 IT A AL G +A + G + G +V+ + E + Sbjct: 126 VVGITAASAALA-------------ISDIPFGGPLAGVKIGRVNGQFVVNPNMQELQNSE 172 Query: 187 VDANFVMTDSGHIVEVQGSAERAT-FSQDHFFAMLNLAKDRIADLIK 232 ++ T+ +Q A S+ F L LA I ++ Sbjct: 173 LELVVAGTED----AIQMVESGANGLSESVFLDALALAHSEIKKIVA 215 >gi|308272445|emb|CBX29049.1| Polyribonucleotide nucleotidyltransferase [uncultured Desulfobacterium sp.] Length = 697 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 86/248 (34%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+ +++R I+ + GS L G+T +L TL T G Sbjct: 312 RIDGRKFDEIRPITCEVGLLPRPHGSALFTRGETQVLAVLTLGSGPDEQRVETLSGEELR 371 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G R + RA+ ++ I + + Sbjct: 372 PFMLHYNFPPYSVGETKR----LGGPSRRDIGHGGLSTRAIERILPPKEEFDYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V++++G + + +AL D +K V+ I+ G++ Sbjct: 428 VLESNGSSSMGTVCSGAMALMD-------------GGVPIKSPVSGIAMGLVKEGDQVVI 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED + D+D T G I +Q + + L A+ +++ Sbjct: 475 LSDILGDEDHSGDMDFKVTGTRDG-ITALQMDIKIHELPRTILENALEQARTGRIFILEK 533 Query: 234 QKDVISNE 241 + IS Sbjct: 534 MLEAISQP 541 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 80/226 (35%), Gaps = 27/226 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRS 69 +++ K A GS V++GDT +L TA E + ++ G +P Sbjct: 14 LTIQAGKLAKQASGSVTVQYGDTVVLVTAVSSYEERPGDFLPLSVEYQEKIYAAGRIP-- 71 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 GN +RE GR + R+I R +R + Q+I + + A Sbjct: 72 -GNYFRREI--GRPSEKETLTSRLIDRPIRPLFPKGYSCEIQVIATVLSMDHENDPDILA 128 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + GA AL G VA++ G IV+ E D Sbjct: 129 MIGASAAL-------------EISDIPFAGPVASVRVIRKEGQLIVNPTIQE--CEGSDI 173 Query: 190 NFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 N ++ S +V V+G + S+ + + + +I +Q Sbjct: 174 NIIIAGSKTGVVMVEGGS--NMVSEKDMLEAIFYGHEAMQPIIDIQ 217 >gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti] gi|108877466|gb|EAT41691.1| conserved hypothetical protein [Aedes aegypti] Length = 307 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 18/184 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR++N+ R+ + V A+GS ++ G+T ++ + ++P + G + Sbjct: 42 RKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYC 101 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 ++ P + +R + + RS + + +AL+ VV + QI I +V++ Sbjct: 102 DFKFSPFACIHRKNPQTDA---EERS--LAAAMTKALQPVVCRHLFPNFQIDIFANVLED 156 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG A IT A +AL D M D V A + ++ +D E Sbjct: 157 DGSVLAAVITAAGLALSDATISMFDI-------------VTASTVAVIEDKIYLDPTLAE 203 Query: 182 DSTI 185 + Sbjct: 204 ERLC 207 >gi|154174457|ref|YP_001407821.1| polynucleotide phosphorylase/polyadenylase [Campylobacter curvus 525.92] gi|187470952|sp|A7GX79|PNP_CAMC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|112802675|gb|EAU00019.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter curvus 525.92] Length = 735 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54 +R GR +++R IS+ V A GSCL G T L ATL + + Sbjct: 343 VRADGRALDEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDILTEKTA 402 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G +A R+ G + RAL +D+++ I + Sbjct: 403 LIEKFMFNYNFPGFSVGEASPLKAPGRRELGHG----NLAKRALAPSIDINS--PYTIRL 456 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A++ G +AL + + + +G A+ + Sbjct: 457 VSEILESNGSSSMASVCGGALALRAAGVDTQKLVAGVAMGLIFEGDKHAV---------L 507 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D + G I +Q + S + L AK ++ L Sbjct: 508 TDIMGLEDHDGDMDFKVAGSSDG-ITALQMDIKLGGISLEVLKEALYQAKRGREHILNLM 566 Query: 235 KDV 237 Sbjct: 567 HQA 569 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 27/190 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 V+K A G+ +++ +T +L T ++ + ++ G +P G VKR Sbjct: 19 VAKQAAGAVMLRVKNTVVLATVARDDVQVEEDFLPLTVQYIEKAYAAGRIP---GGYVKR 75 Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAW 134 E + G R+I R+LR + QI++ V+ AD + + A Sbjct: 76 ET---KPGDFETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPEVDLQVVGLNAAS 130 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194 VAL+ + V + G + +++ E + +D T Sbjct: 131 VALY-------------LSDIPVNRPVCGVRVGYIDDKFVINPSNSELKSSALDLYVAGT 177 Query: 195 DSGHIVEVQG 204 ++ ++ Sbjct: 178 KD-ELLMIEM 186 >gi|116626786|ref|YP_828942.1| polynucleotide phosphorylase/polyadenylase [Candidatus Solibacter usitatus Ellin6076] gi|122251352|sp|Q01NW3|PNP_SOLUE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116229948|gb|ABJ88657.1| 3' exoribonuclease [Candidatus Solibacter usitatus Ellin6076] Length = 701 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 88/244 (36%), Gaps = 19/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR+ +Q+R+I++ V GS L G+T L T TL E+++ + Sbjct: 311 RPDGREFDQIRQITIETGVLPRVHGSTLFTRGETQALVTVTLGTKDDEQRIELLEPGEAS 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL +++ + + Sbjct: 371 KRFMLHYNFPPFSVGEVGFMRGAGRREIGHG----ALAERALTALIPGEDKFPYTMRVVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D ++++G + AAI G +AL M + V++G AI + D Sbjct: 427 DTLESNGSSSMAAICGGSLALMQAGVPMTAHVGGVAMGLVMEGKDYAI---------LTD 477 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + + L A+ ++ + Sbjct: 478 IAGAEDHYGDMDFKVAGTRDG-ITGMQMDIKVPNITTAIMKEALEQARRGRLFILDKMYE 536 Query: 237 VISN 240 + Sbjct: 537 AMPQ 540 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 83/235 (35%), Gaps = 34/235 (14%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 R+I+L K A G+ +V+ GD +L TA + ++ + + T G + Sbjct: 12 RKITLETGKMAKQANGAVVVRSGDAVVLVTACMADQPKPSAGFFPLTVDYREYTYAAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I R +R + + QII + Sbjct: 72 P---GGFIKRE---GRLSEKEVLTCRLIDRPIRPLFPEGFMNETQIIAMVLSADPEQDPN 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + AI G AL + +A + GM G + Y E Sbjct: 126 SLAIVGTAAALA-------------ISDIPFQYVMAGVRVGMRDGQYTANPTYTEGRASK 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-------RIADLIKLQ 234 ++ T+ G IV V+ A+ S+ + + I L+KL Sbjct: 173 LNIVVAGTEEG-IVMVEAGAQE--VSEAEVLGAIEFGHECCKKIAAGIRQLMKLC 224 >gi|189424733|ref|YP_001951910.1| polynucleotide phosphorylase/polyadenylase [Geobacter lovleyi SZ] gi|257096692|sp|B3EAF2|PNP_GEOLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189420992|gb|ACD95390.1| Polyribonucleotide nucleotidyltransferase [Geobacter lovleyi SZ] Length = 703 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I++ + A GS L G+T +L ATL ++ +G Sbjct: 314 IRIDGRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAAATLGTSQDEQRMDSLYGEYR 373 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R A R+ G + RA+ +++ I I Sbjct: 374 KKFMLHYNFPPFSVGETSFRLAPGRREIGHGM----LAERAISAILPNHDDFPYTIRIVA 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172 + ++++G + A + G ++L D +K VA I+ G++ G Sbjct: 430 ETLESNGSSSMATVCGGCLSLMDAGV-------------PVKAPVAGIAMGLIKEGEKVA 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D + G + +Q + S++ L AK+ ++ Sbjct: 477 ILTDILGDEDHLGDMDFKVAGSADG-VTALQMDIKIGGVSKEIMQQALKQAKEGRLHILG 535 Query: 233 LQKDVIS 239 ++ Sbjct: 536 KMAQCLA 542 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 28/235 (11%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 + ++ K A G+ ++ GDT +L T ++ +T Y + G Sbjct: 16 NVKISTGKMAKQASGAVVISSGDTMVLVTVVGTKEAKP---GQDFFPLTVNYTEKTYAGG 72 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 + KRE GR I R+I R +R + S L Q++ + D Sbjct: 73 KIPGSFFKRE---GRPSEDETLICRLIDRPIRPLFPESYLCDTQVMATVISAEEDHDPAI 129 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 ++ GA AL +G +A + G + G I + + D+ Sbjct: 130 LSMIGASAAL-------------MISDIPFEGPIAGVKVGRVDGKLIANPSAEQLKLSDL 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 + V I V+G E S++ + AKD + ++ Q++ ++ +V Sbjct: 177 EI-VVAAGKDAIFMVEG--EADFVSEEDLLEAVFFAKDAVQGILAAQEE-LARQV 227 >gi|297569830|ref|YP_003691174.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio alkaliphilus AHT2] gi|296925745|gb|ADH86555.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio alkaliphilus AHT2] Length = 704 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 20/244 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ R+ +++R I+ V GS L G+T +L +ATL + G Sbjct: 320 IRIDNRRLDEVRNITNEVGVLPRVHGSSLFTRGETQVLVSATLGSGEDEQRIESLSGMSF 379 Query: 59 --ITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P G R R R + RA+++V+ + I + Sbjct: 380 KPFMLHYNFPPYCVGEVRFLRG-----PSRRDIGHGALAERAVQAVLPDAESFPYTIRVV 434 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V++++G + A + GA ++L D M+ + + + +G AI + Sbjct: 435 SEVLESNGSSSMATVCGASLSLMDAGVPMKKPVSGIAMGLIKEGDDIAI---------LS 485 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T+ G I +Q + S++ A LN A++ ++ K Sbjct: 486 DILGDEDHLGDMDFKVAGTEDG-ITALQMDIKLEGVSREIMSAALNQAREGRLHILGKMK 544 Query: 236 DVIS 239 + I+ Sbjct: 545 EAIA 548 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 26/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++++ ++K A GS LV +G + +L TAT + N +T EY + Sbjct: 12 RKLTIETGRLAKQAGGSVLVTYGQSVVLVTATAAREP---KENIDFLPLTIEYQERFYAV 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + +RE GR R+I R LR + QII + Sbjct: 69 GRIPGSFFRREI--GRPTENETLACRIIDRPLRPLFAQGYQHETQIIATVLSADQENDPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G +A + GM+ G +++ + Sbjct: 127 LMAMLGASAALS-------------VSQVPFLGPIAGVRVGMIDGQYVLNPSQEQRKNSR 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D V +V V+G A+ + S++ + A + + L+ +QK+ Sbjct: 174 LDL-IVAGSEKAVVMVEGGAD--SLSEEEVKNGIFFAHESLQPLLAMQKE 220 >gi|325982016|ref|YP_004294418.1| polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212] gi|325531535|gb|ADZ26256.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212] Length = 709 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I++ V GS L G+T L ATL ++ G Sbjct: 315 RIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAIATLGTARDEQKIDSLQGDYNE 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL +V+ + + + Sbjct: 375 RFILHYNMPPYATGEIGRVGTPKRREIGHG----RLAKRALVAVLPPPEEFGYSLRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ +AL D LK HVA I+ G++ Sbjct: 431 ITESNGSSSMASVCSGCLALMDAGV-------------PLKAHVAGIAMGLIKDGNRFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ A L A + ++++ Sbjct: 478 LTDILGDEDHLGDMDFKVAGTEKG-ITALQMDIKIQGITKEIMHAALIQAHEGRMHILQI 536 Query: 234 QKDVISN 240 K + + Sbjct: 537 MKQALPS 543 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 19/166 (11%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G+ KRE GR + R+I R +R + QI+ + +I Sbjct: 74 GSFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFYNEVQIVATVMSADNEIDPDIPSI 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 G AL G + A G + +++ E D N Sbjct: 131 IGTSAALTLSGI-------------PFDGPLGAARVGYINNEYVLNPTTSE--LKDTQLN 175 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V+ + H V + S E S++ + +++ +I + Sbjct: 176 LVVAGTQHAVLMVES-EAIELSEEVMLGAVTYGHEQMQIVIDAINE 220 >gi|114332122|ref|YP_748344.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas eutropha C91] gi|122313196|sp|Q0AE53|PNP_NITEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114309136|gb|ABI60379.1| 3' exoribonuclease [Nitrosomonas eutropha C91] Length = 705 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I++ V GS L G+T L TL + G Sbjct: 315 RIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALVVTTLGTARDEQKIDALQGDYSE 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALLAVLPPVEEFGYAMRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V +++G + A++ G +AL D LK HVA I+ G++ Sbjct: 431 VTESNGSSSMASVCGGCLALMDAGA-------------PLKAHVAGIAMGLIKEGNRFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L AK+ ++ + Sbjct: 478 LTDILGDEDHLGDMDFKVAGTEEG-ITALQMDIKIQGITKEIMQVALLQAKEGRLHILDI 536 Query: 234 QKDVI 238 K + Sbjct: 537 MKQSL 541 Score = 60.9 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 77/241 (31%), Gaps = 44/241 (18%) Query: 14 ISLTRR-VSKYAEGSCLVKF----------GD--THLLTTATLEEKVPMWIRNTKHGWIT 60 +++ ++K A G+ +V GD T + + Sbjct: 15 LTIETGEIAKQAHGAVMVSMDDTVVLVTVVGDKKTK--------PGQDFFPLTVDYQEKF 66 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G +P G+ KRE GR + R+I R +R + Q+I Sbjct: 67 YSAGRIP---GSFFKRE---GRPSEKEILTSRLIDRPIRPLFPDGFYNEVQVIAMVLSSD 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 A+ A GA AL G + A G + +++ Sbjct: 121 AEIDADIPATIGASAALILSGI-------------PFDGPIGAARVGYIDNEYVLNPTTT 167 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + + N V+ + V + S E S+D + D++ +I + + +++ Sbjct: 168 QLNKSQ--LNLVVAGTQKAVLMVES-EANELSEDVMLGAVTYGHDQMQQVINMINE-LAD 223 Query: 241 E 241 E Sbjct: 224 E 224 >gi|319944048|ref|ZP_08018328.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC 51599] gi|319742809|gb|EFV95216.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC 51599] Length = 704 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 99/241 (41%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ V A GS L G+T L ATL +E++ I Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVVATLGTARDEQIIDAITGEYRE 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y M P +TG + R+ G R+ RA+ ++V + I + + Sbjct: 375 RFMMQYNMPPYATGETGRIGTPKRREVGHG----RLAKRAITALVPSQEDFAYSIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D +E + + +G+ A+ + D+ Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVERHVAGIAMGLIKEGNKFAV---------LTDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + +++ L A++ ++ ++ Sbjct: 482 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITREIMQVALAQAREARMHILGKMQEA 540 Query: 238 I 238 I Sbjct: 541 I 541 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 35/235 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A GS LV DT +L T + + + G +P Sbjct: 16 VTLETGEIARQASGSVLVTIDDTMVLATVVAAREPKPGQSFFPLTVDYFEKFYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV----IQADGG 124 G KRE GR + R+I R +R + + Q+++ I AD Sbjct: 75 --GGFFKRE---GRPTEKETLTARLIDRPIRPLFPEGFMNEVQVVLTVLSSNPEIDAD-- 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ GA AL G V A G + G +++ + Sbjct: 128 --IPAMIGASAALA-------------ISGVPFNGPVGAARVGYIDGQYVLNPSASQLKE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +D TD ++ +E + S+D + +++ +I+ ++++ Sbjct: 173 SKLDLVVAGTDQAVLMV---ESEASELSEDVMLGAVVFGHEQMQTVIQAIEELVE 224 >gi|307297863|ref|ZP_07577669.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium mesG1.Ag.4.2] gi|306917123|gb|EFN47505.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium mesG1.Ag.4.2] Length = 730 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKH 56 +R+ GR+ N++R I++ + A GS L G+T + AT++E++ + Sbjct: 322 VRMDGRKHNEIRPINIELDLLPRAHGSALFTRGETQSLGIVTLGATMDEQIVDTMFEEGS 381 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + R+ G + R+L+++V I + Sbjct: 382 KSFMLHYNFPPFSTGEVKRLRGPGRREIGHGH----LAERSLKNIVPNGESFPYTIRVVS 437 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + ++L ME HVA ++ GM+ Sbjct: 438 EVLESNGSSSMATVCSGSLSLMAAGVPMEK-------------HVAGVAMGMIQEPEKTV 484 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + S + L A+ ++ Sbjct: 485 VLTDILGNEDHMGDMDFKVTGTRDG-ITAFQMDVKVSGVSSEIMTKALEQARLARLKILD 543 Query: 233 LQKDVISNE 241 L + I Sbjct: 544 LMYEAIPEP 552 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 90/238 (37%), Gaps = 37/238 (15%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITAEY------- 63 ++ + K A+G+ ++++ D+ LLTT E+ VP T +T EY Sbjct: 14 KLVIENGKMAKQADGAVVLRYADSVLLTTVNGNEQAVP----GTDFLPLTVEYQEKFYAA 69 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G +KRE+ R + R+I R +R + Q+I+ D Sbjct: 70 GKIP---GGFLKRES---RPSDNAVLSARIIDRPIRPLFPDGMRNEIQVIVTVLSADPDN 123 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 I + + L+ +G VA + G + G +V E Sbjct: 124 PPDIWGIMASSLVLN-------------ISPIPFEGIVAGVQVGYVDGKYVVFPSADELE 170 Query: 184 TIDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++D T+ +VE E S++ L A + I L+ QK++IS Sbjct: 171 RSELDIVVAGTEDAVAMVE----GEAKEVSEEVMVGALEAAHEAIKSLVAFQKEIISE 224 >gi|261416773|ref|YP_003250456.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373229|gb|ACX75974.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327483|gb|ADL26684.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 744 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 33/240 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +RL GR ++R I + V A GS + + G+T ++ T + + ++ Sbjct: 338 VRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRGETQGLVICTLGTKADEQRFESLQGEGA 397 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G K+ +S R+ G + R+L +V+ L I + Sbjct: 398 KSYMLHYNFPPFSVGE-CKKLGLSRREIGHGH----LAERSLAAVLPLPEDFPYTIRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 ++++++G + A++ G ++L D +K VA I+ G++ Sbjct: 453 EIMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLISEKGSVK 499 Query: 172 -----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I Q + + + L A+ Sbjct: 500 EGGKIKILSDITGTEDHLGDMDFKVTGTAEG-ITAFQMDIKIRGITPELMREALEQARQG 558 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 34/241 (14%) Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA-TLEEK-VPMWIRNTKHGWI 59 GR I+ ++K A GS + K GD +L+T EEK + ++ Sbjct: 24 PDGRV------ITFETGRIAKQARGSAVAKMGDAFVLSTVCYGEEKDGDFFPLTVEYREK 77 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + G LP G KRE GR R+I R +R + + Q+I+ V+ Sbjct: 78 SYAAGRLP---GGYSKRE--PGRPSDEEILSARIIDRPIRPMFPENFTREVQVIV--QVL 130 Query: 120 QADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +D ++ A +++ + VAA+ ++ G IV Sbjct: 131 SSDKKFAPDVLGVSAASLSI-------------GLSELPFEQQVAAVRVAVVDGQNIVMP 177 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 Y + + D+D T+ + V+G A S+D + + I + K Q+++ Sbjct: 178 TYDQVAVADLDLVVAGTED-SVCMVEGGAYE--VSEDTMIGAILAGHEVIKQMCKAQQEL 234 Query: 238 I 238 + Sbjct: 235 V 235 >gi|71649471|ref|XP_813459.1| exosome complex exonuclease RRP41A [Trypanosoma cruzi strain CL Brener] gi|70878342|gb|EAN91608.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi] Length = 195 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 18/182 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +RL GR+ + R ++L +G C V G + + +V + + I Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T E + + R R+ S+E+ + RSVV LS + QI I +V+ Sbjct: 73 TCEVAIAAFAGEKRR----APQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + DG + A I A +AL D M D V A + G++ +VDL Sbjct: 129 RQDGSDKAACINAACLALVDASVAMRDI-------------VYAQTVGLINAVDVVDLTT 175 Query: 180 GE 181 E Sbjct: 176 EE 177 >gi|85712994|ref|ZP_01044032.1| Polynucleotide phosphorylase [Idiomarina baltica OS145] gi|85693163|gb|EAQ31123.1| Polynucleotide phosphorylase [Idiomarina baltica OS145] Length = 713 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + +R IS+ V GS L G+T L TATL + + G T+ Sbjct: 314 RIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRDAQMIDELTGTSTS 373 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G A R+ G R+ R +++V+ + + + Sbjct: 374 RFLLHYNFPPYCVGETGMVGAPKRREIGHG----RLAKRGIQAVMPSHEEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKSSVAGIAMGLVKEGDKHVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + ++D + L AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGNNEG-ITALQMDIKIDGITRDIMESALGQAKAARLHILSV 535 Query: 234 QKDVISNE 241 + I Sbjct: 536 MDEAIGEH 543 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT +L + E + + T G +P Sbjct: 15 VTLETGVVARQATAAVMASMDDTTVLVSVVAKKEAREGQDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q++ + Sbjct: 74 --GGFFKRE---GRPSENETLTSRLIDRPIRPLFPEGFMNEVQVVATVVSVNPQVSPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G++ +++ E + +D Sbjct: 129 AMIGTSAALA-------------ISGVPFNGPIGAARVGVINDEYVLNPTQDELTESKLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T ++ +E S+D + + + +I + Sbjct: 176 LVVAGTQQAVLMV---ESEANLLSEDTMLGAVMFGHESMQVVIDAINE 220 >gi|296330884|ref|ZP_06873359.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674402|ref|YP_003866074.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151889|gb|EFG92763.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412646|gb|ADM37765.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 705 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +Q+R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ + + Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D TD G + +Q + S++ L AK +++ Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTDKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILN 536 Query: 233 LQKDVISN 240 +S Sbjct: 537 SMLATLSE 544 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ ++++GDT +L TA+ E K + + + G +P Sbjct: 15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I + D + Sbjct: 75 ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + I++ + D+ Sbjct: 129 AAMFGSSLALS-------------VSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ ++ + + I LI Q+++++ Sbjct: 176 NLVVAGTKDA-INMVEAGADEVP--EETMLEAIMFGHEEIKRLIAFQEEIVA 224 >gi|302392342|ref|YP_003828162.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum DSM 5501] gi|302204419|gb|ADL13097.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum DSM 5501] Length = 708 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 29/234 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 RE++L + A GS LV++G+T +L TAT+++ R + + Y S Sbjct: 13 RELTLETGKLAQQANGSVLVRYGETVILVTATMDDP-----RGMDYFPLMINYEERLYSV 67 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR + R+I R LR + Q+I + D Sbjct: 68 GKIPGGFIKRE---GRPSEAATLTSRLIDRPLRPLFPEGMRHDVQVIATVLSVDNDNSPE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL +G + ++ G++ G I++ E Sbjct: 125 VAAMIGASAALS-------------ISDIPFEGPIGGVNVGLVDGELILNPTVEEQEESS 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D V + ++ V+ +A ++D ++ ++ +IKLQ+++++ Sbjct: 172 LDL-IVAGNKDGVMMVESAANE--VTEDKMIEAIDYGHQKLQGIIKLQEEMVAK 222 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R+ GR +++R I V A GS + G T ++T AT +E+ I + Sbjct: 318 RVDGRDLDEVRPIWCEVDVLPRAHGSGIFTRGQTQVMTVATLGAVGDEQRLDGIEVKESK 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G G R + RALR ++ I + + Sbjct: 378 RYMHHYNFPSFSVGE----TGPIRGPGRREIGHGALGERALRPMIPEHDDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++++G T A+I G+ ++L D + + + KG + D+ Sbjct: 434 VLESNGSTSQASICGSTLSLMDAGVPIRKPVAGIAMGLMKKGDKV---------EVLSDI 484 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D ++ G I +Q + S+D L A+ ++ +V Sbjct: 485 QGIEDFNGDMDFKVAGSEDG-ITALQMDVKIKGISKDILAEALEQARQGRLHILDKMLEV 543 Query: 238 I 238 + Sbjct: 544 M 544 >gi|260655007|ref|ZP_05860495.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi E3_33 E1] gi|260630322|gb|EEX48516.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi E3_33 E1] Length = 756 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 95/253 (37%), Gaps = 30/253 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNT 54 +R GR +Q+R IS + GS L G+T L TATL ++ + N Sbjct: 311 VRADGRATDQIRPISCEIGLLPRVHGSALFTRGETMSLATATLGMLGEDDQMMDGLKHNE 370 Query: 55 KHGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 + Y P S G R R G R + RAL ++ + Sbjct: 371 PNKRFLLHYNFPPFSVGEVRPMRG-----PGRREIGHGALAERALAPIIPSEEDFPYVVR 425 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171 + D+++++G + A+I G +AL +K HVA I+ G++ Sbjct: 426 VVSDILESNGSSSQASICGGSLALMAAGV-------------PVKCHVAGIAMGLIKEGD 472 Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 + D+ ED D+D T G + +Q + +++ L A+ + Sbjct: 473 DVVILTDIQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITKEILTQALGQARKARME 531 Query: 230 LIKLQKDVISNEV 242 ++ + I+ V Sbjct: 532 ILDKMEACIAAPV 544 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 82/228 (35%), Gaps = 29/228 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67 E+ T V+K A G+ + GDT +LTTA + +K + + G +P Sbjct: 13 ELQFTTGKVAKQANGAIWARVGDTVVLTTACMTDKPRVGLDFFPLLVDFEERYYSAGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R++RS+ + ++ + Sbjct: 73 ---GGFIKRE---GRPSQTAILSARVIDRSIRSLFEDWMRHDVHVVTTVLSVDQKNTPNI 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI A AL G V A+ G + G +V+ ED + Sbjct: 127 LAINAASAALC-------------ISDIPWNGPVGAVRMGYVNGQLVVNPT--EDQMPES 171 Query: 188 DANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + V + I V+ A + L +A++ I + + Q Sbjct: 172 SLDLTVAGHADGITMVEAGAHEVP--EALLIDALGVAQEEIRKICQFQ 217 >gi|194335788|ref|YP_002017582.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon phaeoclathratiforme BU-1] gi|226702672|sp|B4SDX4|PNP_PELPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|194308265|gb|ACF42965.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon phaeoclathratiforme BU-1] Length = 728 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR +Q+R IS+ + A GS L G+T L T TL K + ++ Sbjct: 332 RLDGRALDQVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTSSADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + G G R + R+++ V I I D Sbjct: 392 KFYLHYNFPPFCVGETGR----LGSIGRREIGHGNLAERSIKMVAPTEEEFPYTIRIVSD 447 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +AL D ++ + + + +G A+ + D+ Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIKKPVSGIAMGLIKEGASYAV---------LSDI 498 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + L A+ ++ + Sbjct: 499 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILETALEQARRGRLHILGEMEKA 557 Query: 238 ISN 240 I + Sbjct: 558 IPS 560 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 85/235 (36%), Gaps = 29/235 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTA-----TLEEKVPMWIRNTKHGWITAEYGMLP 67 IS+ K A+G+ +V+ GDT ++ T T + ++ + G P Sbjct: 15 ISIETGKMAKQADGAVVVRQGDTMVIATVVSSKKTPPPNQDYFPLQVEYREKYSAAGKFP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE+ R + R+I RALR + L QII+ Sbjct: 75 ---GGFFKRES---RPSEKEILSARLIDRALRPLFPDGYLYETQIIVTV----------- 117 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I+ + D L + + ++ + G + G +V+ D E D+ Sbjct: 118 --ISSDQINDADVLGGLAASCAIMVSDIPFQNPMSEVRVGRINGLFVVNPDINELVNSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D T++ I ++G E S+ + I L LQ + I+ EV Sbjct: 176 DICIGGTEN-TICMLEG--EMKEISEAEMLDAIKFGHAAIRKLCALQSE-IAAEV 226 >gi|237734516|ref|ZP_04564997.1| 3' exoribonuclease [Mollicutes bacterium D7] gi|229382336|gb|EEO32427.1| 3' exoribonuclease [Coprobacillus sp. D7] Length = 714 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G+T +L+ AT E + + Sbjct: 318 IRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEHQKIDGLGLEDQ 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + RAL V+ I + Sbjct: 378 KRFMHHYNFPPYSVGETGR----MGAPGRREIGHGALGERALAQVIPSEEAFPYTIRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I + +AL +K VA ++ G++ Sbjct: 434 EVLESNGSSSQASICASTMALMAAGV-------------PIKAPVAGVAMGLVKKGDAYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D TD+G I +Q + +++ L AK ++ Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTDAG-ICALQMDIKIDGITKEILQEALAQAKVARKQIMA 539 Query: 233 LQKDVIS 239 D I+ Sbjct: 540 NMMDAIA 546 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 26/231 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68 +S+ ++K A G+ LV++ DT +L+T + V + + G +P Sbjct: 14 NLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPKNVDFFPLTVTYEEKLYSVGKIP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR RMI R +R + Q + + D A Sbjct: 73 --GGFLKRE---GRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDATPEMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA +AL G +A ++ G++ G IV+ + ++ Sbjct: 128 AMLGASLALC-------------VSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLIN 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ L ++I +LI Q+ V+ Sbjct: 175 LEVAGTKDA-INMVEADAKE--VSEEVMLEALLFGHEKIKELIAFQEKVVE 222 >gi|307264921|ref|ZP_07546483.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter wiegelii Rt8.B1] gi|306920179|gb|EFN50391.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter wiegelii Rt8.B1] Length = 700 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R+ GR + +R I V GS + G T +LT AT + ++ I + + Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL V+ I + Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALGERALEPVIPSEEEFPYTIRLVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ +AL D ++ + + +G V ++ + D Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + ++ L A+ ++ + Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLE 537 Query: 237 VISNE 241 VI Sbjct: 538 VIKEP 542 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 90/235 (38%), Gaps = 31/235 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + V++ A G+ VK+GDT +L T E + + ++ G + Sbjct: 13 RKLLVQTGKVAQQANGAAWVKYGDTVVLVTVCASKEPREGIDFFPLTVEYEERLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q+I + D Sbjct: 73 P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL G A++ G++ G I++ ++ + Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSL 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKDV 237 + T IV V+ A+ ++ + A + I +I ++ K+V Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEVP--EETMLDAIMYAHEYIKQIIGFIEEIVKEV 225 >gi|78189646|ref|YP_379984.1| polynucleotide phosphorylase/polyadenylase [Chlorobium chlorochromatii CaD3] gi|123579359|sp|Q3APY4|PNP_CHLCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78171845|gb|ABB28941.1| RNA binding S1 [Chlorobium chlorochromatii CaD3] Length = 728 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR +Q+R I++ + A GS L G+T L T TL + + N+ Sbjct: 332 RLDGRALDQVRPITIELGLIPRAHGSALFTRGETQALVTLTLGTQKDAQSVDNLTNSDDK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R + R+++ V A I I D Sbjct: 392 RFYLHYNFPPFSVGECGR----LGSIGRREIGHGNLAERSIKMVAPTEAEFPYTIRIVSD 447 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +AL D + + + + + A+ + D+ Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKENDKYAV---------LSDI 498 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + L A+ ++ + Sbjct: 499 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHIVENALEQARKGRLHILNEMEKA 557 Query: 238 I 238 I Sbjct: 558 I 558 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 22/229 (9%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPR 68 R +S+ K A+G+ +V+ GDT +L T +K P ++ +Y R Sbjct: 13 RILSIETGKMAKQADGAAIVRLGDTMVLATVVSSKKTPPLGQDFFPLQVEYREKYSAAGR 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I RALR + QIII Sbjct: 73 FPGGFFKRE---GRPSEKEILSARLIDRALRPLFPDGYYYETQIIISV------------ 117 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 I+ V D L + + + ++ + G + G I++ D E D+D Sbjct: 118 -ISSDQVNDGDVLGGLAASAAIMVSDIPFQNPMSEVRVGRVNGLYIINPDVNELKESDID 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 T+ I ++G E S+ + I L LQ++V Sbjct: 177 MCIGGTND-TICMLEG--EMNEISETEMLEAIQFGHTAIRKLCVLQQEV 222 >gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax ferrireducens T118] gi|122479529|sp|Q21YD1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118] Length = 706 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L TL + + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL +V+ + + + Sbjct: 377 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALMAVLPSKEEFPYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEENRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ ++ Sbjct: 539 MQEAMAE 545 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 +++ +++ A G+ L+ T +L T + + + T G +P Sbjct: 18 VTMETGEIARQASGAVLLDMDGTVVLATVVAKTEGKAGQDFFPLTVDYLEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KRE GR R+I R +R + +++ + + A Sbjct: 77 --GSFFKRE---GRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTLSLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ +D Sbjct: 132 ALIAVSAALSVSGI-------------PFSGPIGAARVGYINGEYVLNPGQTARKDSVMD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237 T++ ++ +E S++ + + I + +L +D Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHEQGNIAINAIHELVRDA 228 >gi|167756799|ref|ZP_02428926.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402] gi|167702974|gb|EDS17553.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402] Length = 718 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G+T +L+ AT E + + Sbjct: 318 IRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEHQKIDGLGLEDQ 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + RAL V+ I + Sbjct: 378 KRFMHHYNFPPYSVGETGR----MGAPGRREIGHGALGERALAQVIPSEEAFPYTIRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I + +AL +K VA ++ G++ Sbjct: 434 EVLESNGSSSQASICASTMALMAAGV-------------PIKAPVAGVAMGLVKKGDAYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D TD+G I +Q + +++ L AK ++ Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTDAG-ICALQMDIKIDGITKEILQEALAQAKVARKQIMA 539 Query: 233 LQKDVIS 239 D I+ Sbjct: 540 NMMDAIA 546 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 26/231 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68 +S+ ++K A G+ LV++ DT +L+T + V + + G +P Sbjct: 14 NLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPKNVDFFPLTVTYEEKLYSVGKIP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR RMI R +R + Q + + D A Sbjct: 73 --GGFLKRE---GRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDATPEMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA +AL G +A ++ G++ G IV+ + ++ Sbjct: 128 AMLGASLALC-------------VSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLIN 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ L ++I +LI Q+ V+ Sbjct: 175 LEVAGTKDA-INMVEADAKE--VSEEVMLEALLFGHEKIKELIAFQEKVVE 222 >gi|110638186|ref|YP_678395.1| polynucleotide phosphorylase/polyadenylase [Cytophaga hutchinsonii ATCC 33406] gi|123058787|sp|Q11U61|PNP_CYTH3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110280867|gb|ABG59053.1| polyribonucleotide nucleotidyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 717 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 88/250 (35%), Gaps = 28/250 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR Q+R I A GS + G+T LTT T ++ + + + + Sbjct: 322 RLDGRSLEQIRPIWSEVGYLPSAHGSAIFTRGETQSLTTVTFGTRLDEQMIDSAMFSGNN 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y STG R+ G + RA++ V+ I I D Sbjct: 382 KLMLHYNFPGFSTGEVKPNRGPGRREVGHG----NLAYRAIKKVMPPEIENPYTIRIVSD 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 438 ILESNGSSSMATVCAGTLALMDAGIK-------------IKAPVSGIAMGLITDTKTGRW 484 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T+ G I Q + S D L A ++ Sbjct: 485 AVLSDILGDEDHLGDMDFKVTGTEKG-ITACQMDIKVDGLSYDILSQALQQANRGRLHIL 543 Query: 232 KLQKDVISNE 241 K ++ Sbjct: 544 SEMKKTLATP 553 Score = 79.4 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 33/231 (14%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 G REI + K A+GS +VK G+ +L T + V + + Sbjct: 16 PDG------REIQIETGKLAKQADGSAVVKLGNAMILATVVSAKEAKPGVDFMPLSVDYQ 69 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A G +P G +KRE+ R I R++ RA+R + Q+ I Sbjct: 70 EKFASNGKIP---GGFLKRES---RLSDYEILISRLVDRAMRPLFPEDFHADTQVAIT-- 121 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +I AD L D L + + G V+ + L G I++ Sbjct: 122 LISADADV-----------LPDALACLAAQAAMSVSDIPFNGPVSEVRVISLNGEFIINP 170 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 + +++ V +++ V+G E + S++ + +A D I Sbjct: 171 KPAQIEKAELEL-IVAASYDNVIMVEG--EMSEVSEELMLNAIKVAHDAIR 218 >gi|320107057|ref|YP_004182647.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis SP1PR4] gi|319925578|gb|ADV82653.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis SP1PR4] Length = 799 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 18/244 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56 +R R +++R I + + GS L G+T L TATL + Sbjct: 314 IRPDRRAFDEIRTIDIEVGILPRTHGSALFTRGETQALVTATLGTGDDAQRMESYEGEQK 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + S R+ G + RA+ +V+ A + + Sbjct: 374 KRFMLHYNFPPYSVGEVGRMTGTSRREVGHG----ALAYRAIEAVLPPEAESPYTLRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+ +++G + A++ GA +AL ++ + V +G AI + D Sbjct: 430 DITESNGSSSMASVCGASLALMQAGISLKGSVAGVAMGLVKEGDSYAI---------LTD 480 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T +G I +Q + + + A+ L+ Sbjct: 481 IAGAEDHYGDMDFKVAGTRNG-ITAMQMDIKIMGITPQIMREAMEQARHGRLFLLDKMDA 539 Query: 237 VISN 240 VI++ Sbjct: 540 VIAS 543 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 78/232 (33%), Gaps = 34/232 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 I+ ++K A G+ GD +L TA +E + + ++ G +P Sbjct: 14 RITFETGRIAKQASGAAFTSSGDVVILATAVGAPDPKEGIDFFPLTVEYRETAYGGGRIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R R + Q+I + Sbjct: 74 ---GGFIKRE---GRPSEKEILTCRLIDRPCRPLFPDGYRNETQVIAFVYSADKENDPDV 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI A A+ +G + A+ G++ G IV+ Y E + Sbjct: 128 IAINAASCAIS-------------LSDLPFQGPIGAVRVGLIDGNFIVNPTYTERKESLI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-------RIADLIK 232 + T G IV V+ A+ +D + + I +L+ Sbjct: 175 NIIVAGTKDG-IVMVESGAKEIP--EDKVIDAIEFGHEQVKLICAGIDELVA 223 >gi|154295932|ref|XP_001548399.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10] gi|150843771|gb|EDN18964.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10] Length = 261 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 83/242 (34%), Gaps = 20/242 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +RL GR+ N++R ++ ++GS + G+T +L T T P +R+ G Sbjct: 13 LRLDGRRWNELRRLTAQISTQPSSDGSSYLSMGNTQVLCTVTGP-CDPSKLRSIGGGGSN 71 Query: 58 ------WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 + E + +R K GR R QE+ + + + Sbjct: 72 NAGEKAEVRVEISFAGFAGVDRKK----YGRNDKRIQELSNTLSTTFTPHLLTTLTSHST 127 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 I+I ++ DG +A I + +AL D M G ++ S Sbjct: 128 ILISLHILSLDGSLLSALINASTLALIDAGIPMPSYICACTA-----GSTSSYSSNDEKA 182 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 P++DL+ GE+ + G V ML + D + Sbjct: 183 DPLLDLNLGEEQELPF-LTVATAGEGDGDGVVALVMETRVQAGRLEGMLAVGVDGCKQVR 241 Query: 232 KL 233 ++ Sbjct: 242 EI 243 >gi|237805195|ref|YP_002889349.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273495|emb|CAX10411.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis B/TZ1A828/OT] Length = 695 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 92/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R+ GR ++R IS+ GSCL G+T + T E + + Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL V+ + I ++ Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPEISRFPYIIRLES 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + L AK + ++ Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535 Query: 233 LQKDVISNE 241 L V+++ Sbjct: 536 LMTQVLASP 544 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 85/235 (36%), Gaps = 33/235 (14%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ LVK +T + A+L E V + ++ R++G Sbjct: 18 FETGKIARQASGAILVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR R + R+I R+LR + Q++ DG T A Sbjct: 75 GFLKRE---GRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I GA AL +A + G++ G +++ E S +D Sbjct: 130 ICGASAALA-------------ISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241 T S ++ ++G +++ + + IA + I+ + + Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQ 228 >gi|16078732|ref|NP_389551.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. 168] gi|221309547|ref|ZP_03591394.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. 168] gi|221313871|ref|ZP_03595676.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323066|ref|ZP_03604360.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. subtilis str. SMY] gi|321315436|ref|YP_004207723.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5] gi|1709698|sp|P50849|PNP_BACSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; AltName: Full=Vegetative protein 15; Short=VEG15 gi|1184680|gb|AAC43595.1| polynucleotide phosphorylase [Bacillus subtilis] gi|2634041|emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp. subtilis str. 168] gi|291484223|dbj|BAI85298.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp. natto BEST195] gi|320021710|gb|ADV96696.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5] gi|1589234|prf||2210369A polynucleotide phosphorylase Length = 705 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +Q+R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ + + Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T+ G + +Q + S++ L AK +++ Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILN 536 Query: 233 LQKDVISN 240 +S Sbjct: 537 SMLATLSE 544 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 94/232 (40%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ ++++GDT +L TA+ E K + + + G +P Sbjct: 15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I + + + Sbjct: 75 ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + I++ + D+ Sbjct: 129 AAMFGSSLALS-------------VSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ ++ + + I LI Q+++++ Sbjct: 176 NLVVAGTKDA-INMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224 >gi|226940843|ref|YP_002795917.1| polynucleotide phosphorylase/polyadenylase [Laribacter hongkongensis HLHK9] gi|254782724|sp|C1D8W8|PNP_LARHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226715770|gb|ACO74908.1| Pnp [Laribacter hongkongensis HLHK9] Length = 701 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I++ V A GS L G+T L + TL K I + G T Sbjct: 316 RIDGRDTRTVRPIAIRTGVLPRAHGSVLFTRGETQALVSTTLGTKQDEQIIDALAGEYTD 375 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGETGRMGPPKRREIGHG----RLAKRALIAVLPKQEDFSYSMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L + + + +L+ + A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLMNAGVPLSAHVAGIAMGLILEDNRFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G + +Q + +++ L+ AK+ ++ + K Sbjct: 483 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALDQAKEGRLHILGIMKSA 541 Query: 238 I 238 I Sbjct: 542 I 542 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 28/234 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68 + L +++ A GS LV DT +L T+ + V + + T G +P Sbjct: 16 VKLETGEIARQASGSVLVSMDDTVVLVAVTVNKDVKPGQDFFPLTVDYYERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + Q++ + + Sbjct: 75 --GGFFKRE---GKQSEKEILTCRLIDRPIRPLFPAGFYHDVQVVATVMSLNPEVDADIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA A+ G + A G G I++ E +T +D Sbjct: 130 AMIGASAAMVLAGV-------------PFMGPIGAARVGYANGEYILNPTKTELTTSQLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T+S ++ +E + + +++ IK + +++EV Sbjct: 177 LVVAGTESAVLMV---ESEAQQLPEAVMLGAVVYGHEQMQAAIKAINE-LADEV 226 >gi|322818634|gb|EFZ25985.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi] Length = 252 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 18/182 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59 +RL GR+ + R ++L +G C V G + + +V + + I Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T E + + R R+ S+E+ + RSVV LS + QI I +V+ Sbjct: 73 TCEVAIAAFAGEKRR----APQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVL 128 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + DG + A I A +AL D M D V A + G++ +VDL Sbjct: 129 RQDGSDKAACINAACLALVDASVAMRDI-------------VYAQTVGLIHAVDVVDLTT 175 Query: 180 GE 181 E Sbjct: 176 EE 177 >gi|255311683|ref|ZP_05354253.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis 6276] Length = 695 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R+ GR ++R IS+ GSCL G+T + T E + + Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL V+ ++ I ++ Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + L AK + ++ Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535 Query: 233 LQKDVISNE 241 L V+++ Sbjct: 536 LMTQVLTSP 544 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 33/235 (14%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ LVK +T + A+L E V + ++ R++G Sbjct: 18 FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR R + R++ R+LR + Q++ DG T A Sbjct: 75 GFLKRE---GRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I GA AL VA + G++ G +++ E S +D Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241 T S ++ ++G +++ + + IA + I+ + I + Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228 >gi|169333888|ref|ZP_02861081.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM 17244] gi|169259453|gb|EDS73419.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM 17244] Length = 711 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R I+ + A GS L G T +++ ATL +E++ I Sbjct: 311 IRPDGRKVDEIRPITCEVGKIRRAHGSGLFTRGQTQVMSMATLGAIRDEQIIDGIGEETS 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ I + Sbjct: 371 KKYIHHYNFPAYSVGE----TGPMRGPGRREIGHGALAERALLPVIPDQKDFPYTIRVVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V+ ++G T A++ G+ ++L D +K VA I+ G++ Sbjct: 427 EVLASNGSTSQASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLIKEENKVS 473 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + L AK ++ Sbjct: 474 VLSDIQGVEDFYGDMDFKVAGTSEG-ITAIQMDIKIKGIDKAILTEALARAKKGRFHILG 532 Query: 233 LQKDVI 238 ++ I Sbjct: 533 KMEEAI 538 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 27/234 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 RE+ + A GS + +GDT +L A + +E + + + + G + Sbjct: 12 RELCVEVGELAQMANGSVFISYGDTQILVNACMSKEAKEGIDFFPLSVFYEEKMYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R LR + D QI+ + D Sbjct: 72 P---GGFLKRE---GRASEKATLTCRLIDRPLRPLFDKGFRNDVQIVATVMGVDQDNSPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 +I GA +AL G V A++ G++ G + + + D Sbjct: 126 ITSILGASLAL-------------GISDIPFDGPVGAVNVGLIDGELVYNPTSDQRDISD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T ++ V+ A S++ + A + I ++IK Q+++I Sbjct: 173 LSLTVAGTSEA-VLMVEAGANE--VSEEIMIDAIMGAHEHIKEIIKFQEEIIKE 223 >gi|78776629|ref|YP_392944.1| polynucleotide phosphorylase/polyadenylase [Sulfurimonas denitrificans DSM 1251] gi|123754746|sp|Q30TH2|PNP_SULDN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78497169|gb|ABB43709.1| Polyribonucleotide nucleotidyltransferase [Sulfurimonas denitrificans DSM 1251] Length = 721 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG- 57 +R GR N++R IS++ V A SCL G T L T + M+ T G Sbjct: 340 VRADGRALNEIRPISISTNVLPSAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGT 399 Query: 58 ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G R+ G + RAL +V+L + + + Sbjct: 400 QNENFMVHYNFPGFSVGEASPIMGTKRRELGHG----NLAKRALEPIVNLE---GQTVRL 452 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A + G ++AL D + V +G AI + Sbjct: 453 VSEILESNGSSSMATVCGGYMALRAADIETSDTIAGIAMGMVSEGDKYAI---------L 503 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D + G I +Q + S + L AK+ A +I + Sbjct: 504 SDIMGLEDHDGDLDFKVTGSKDG-ITAMQMDIKLGGISLNILKEALYQAKEGRAHIINIM 562 Query: 235 KDV 237 ++ Sbjct: 563 QEA 565 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 30/197 (15%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ +K G+T +L T ++E I +T +Y G +P G Sbjct: 21 VAKQANGAAWLKSGNTVILATVVIDETE---IVKDDFLPLTVQYIEKAYAAGKIP---GG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 KRE + R++ R+LR + QI I + + + Sbjct: 75 FFKRET---KASDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSVDKESDLQV----- 126 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 L + + + V+AI + G I++ E +D Sbjct: 127 --------LALNAASAALYVSDIDINKSVSAIRVAKIDGELILNPTLSELDKSTLDLYLS 178 Query: 193 MTDSGHIVEVQGSAERA 209 T ++ ++ ++ Sbjct: 179 GTKED-LLMIEMRSKGG 194 >gi|254169471|ref|ZP_04876288.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469] gi|197621577|gb|EDY34175.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469] Length = 210 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 79/208 (37%), Gaps = 18/208 (8%) Query: 35 THLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI 94 T +L +E P + G +T + P ++ G G + E+ R++ Sbjct: 1 TRVLVGVKIEPGTP-FPDTPNMGILTTNAELAPLASPT-----FEPGPPGEEAIELARVV 54 Query: 95 GRALRS--VVDLSAL----GSRQ--IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146 R +R +DL L G + + ID V+ DG AA GA AL + + Sbjct: 55 DRGIREGHAIDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVPASR 114 Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206 ++ + ++ + + + D + E+S + G I +Q Sbjct: 115 YDLGEDFKLPVQHYPVPVTFAKIGDWIVADPNLDEESIASARLTVATNEEGKINAMQK-G 173 Query: 207 ERATFSQDHFFAMLNLAKD---RIADLI 231 TF+ + ++N++ + ++ ++I Sbjct: 174 LSGTFTYEEVKKVINMSMNIGGKVREII 201 >gi|94497007|ref|ZP_01303581.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58] gi|94423683|gb|EAT08710.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58] Length = 778 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR Q+R I GS L G+T + T TL K + + G Sbjct: 323 RIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLTGLHYE 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G ++ RAL V+ I + D Sbjct: 383 NFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHPVLPSKDEFPYTIRVLSD 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D ++ + + +L+G A+ I D+ Sbjct: 439 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDYAV---------ISDI 489 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A +Q+ F L AK+ A ++ Sbjct: 490 LGDEDHLGDMDFKVAGTENG-ITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKA 548 Query: 238 ISN 240 +S+ Sbjct: 549 LSS 551 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 27/225 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++L +++ A+ + L +G+T +L T + V +T Y S Sbjct: 23 LTLETGRIARQADAAVLATYGETVVLCAVTAAKSV---KDGQDFFPLTVHYQ-EKYSAAG 78 Query: 73 RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128 R+ +G +E + R+I R +R + I + V+ DG Sbjct: 79 RIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNE--INVIAQVLSFDGESEPDIV 136 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ A AL G + A G G ++ E D+D Sbjct: 137 AMIAASAAL-------------TLSGVPFMGPIGAARVGYKDGEYQLNPSLEEAKEGDLD 183 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 T + ++ V+ +E S+D + A D ++ Sbjct: 184 LVVAATGNA-VMMVE--SEAKELSEDVMLGAVMFAHDAAKKVVNA 225 >gi|228472909|ref|ZP_04057666.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga gingivalis ATCC 33624] gi|228275491|gb|EEK14268.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga gingivalis ATCC 33624] Length = 727 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 20/230 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR Q+R I GS + G+T LTT TL E V Sbjct: 317 LRLDGRNTKQIRPIWCEVGYLPSPHGSAIFTRGETQSLTTVTLGTSREANVIDIPSEQGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ ++ + + Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKRMIPED--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + +AL D M+ + + + G A+ + D Sbjct: 431 EILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDKYAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED D+D T G I Q + + + L A++ Sbjct: 482 ILGDEDHLGDMDFKVTGTKDG-ITACQMDIKIKGLTYEILEKALEQAREG 530 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 82/236 (34%), Gaps = 28/236 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R IS+ K A+GS +V+ G+ LL T E V + A G Sbjct: 16 RTISIETGKLAKQADGSVVVQMGNAMLLATVVANKEAGEGVDFLPLTVDYREKFAAAGRF 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KREA R + R++ R LR + Q++I ++ D Sbjct: 76 P---GGFFKREA---RPSDQEILTMRLVDRVLRPLFPKEYYCEVQVMI--QLMSHDENV- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G ++ + G + G I++ + Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRINGEFIINPSAQ--QLAE 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D + ++ S V + E S+ ++ A + I I+ Q + + +V Sbjct: 175 SDMDIMVGASKEFVAMV-EGEMDEVSEKDMADAIHFAHEAIKVQIEAQ-ERLREKV 228 >gi|51246460|ref|YP_066344.1| polynucleotide phosphorylase/polyadenylase [Desulfotalea psychrophila LSv54] gi|81641366|sp|Q6AJY9|PNP_DESPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|50877497|emb|CAG37337.1| probable polyribonucleotide nucleotidyltransferase [Desulfotalea psychrophila LSv54] Length = 692 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR +++R+IS GS L G+T L TATL + + Sbjct: 312 VRIGGRAWDEIRDISSETEYLPKTHGSALFTRGETQALVTATLGSERDKQRVETLNGETS 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G S R G + R L +V+ I + Sbjct: 372 RRFMLHYNFPPYCVGEARFLRGPSRRDIGHGT----LATRGLEAVLPSEEDFPYAIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++++++G + A++ G +A+ D LK V+ I+ G++ G Sbjct: 428 EILESNGSSSMASVCGGSMAMMDAGV-------------PLKRPVSGIAMGLIKEGEGVA 474 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 I+ D+ ED D+D V T G I +Q + S+D L+ AK +++ Sbjct: 475 ILSDILGDEDHLGDMDFKVVGTCDG-ITALQMDIKIDGVSRDIMSNALDQAKRGRMHILE 533 Query: 233 LQKDVISN 240 I+ Sbjct: 534 EMSKGIAE 541 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 82/235 (34%), Gaps = 40/235 (17%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW----ITAEYGMLPR 68 IS+ K A GS ++ T+ + + + +T EY Sbjct: 14 ISIETGKLAKQASGSIVIS-------CGGTVVLVTVVGAKTSNPNVDFLPLTIEYQ-EKF 65 Query: 69 STGNRV-----KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD- 122 S RV +RE GR + R+I R LR + Q+I V+ AD Sbjct: 66 SAVGRVPGNYFRREI--GRPSDQEVLTCRIIDRPLRPLFPEGYRSETQVIAT--VLSADQ 121 Query: 123 -GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 A+TGA AL G VA + G +++ + E Sbjct: 122 VNSPDVLALTGASAALS-------------ISHIPFAGPVAGGRIAYIDGKYVLNPTFAE 168 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + +D T + IV V+G A+ S+D + A + + LI LQ + Sbjct: 169 LESSSMDLMVACTRNA-IVMVEGKADE--LSEDEILGAIFFAFENLQPLINLQDE 220 >gi|270009587|gb|EFA06035.1| hypothetical protein TcasGA2_TC008865 [Tribolium castaneum] Length = 300 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 72/206 (34%), Gaps = 36/206 (17%) Query: 2 RLSGRQENQMREI------------------SLTRRVSKYAEGSCLVKFGDTHLLTTATL 43 R GR + R+I L V A+GS ++ T ++ + Sbjct: 42 RADGRTSTEHRKICNLSLGPCVFLDLIFNFLVLKTGVVSQAKGSAYIELDQTKVIVSVFD 101 Query: 44 EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103 ++P + G I E+ P S R + Q Q+ ++ +AL S V Sbjct: 102 PREIPNKTDYSSKGEIYCEFKFAPFSCHKRRLHQ-----QDAEEQQFSAIMKQALESAVF 156 Query: 104 LSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA 163 + Q+ I V+ DG +AAIT A VAL M D + + Sbjct: 157 RHEFPNFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDL-------------ITS 203 Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDA 189 ++ + + +VD E+ V Sbjct: 204 VTLAVQGNHLLVDPTLEEERLCQVPL 229 >gi|295706237|ref|YP_003599312.1| polynucleotide phosphorylase [Bacillus megaterium DSM 319] gi|294803896|gb|ADF40962.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium DSM 319] Length = 708 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLSVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ I + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPNEKDFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKSGEHYS 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G + +Q + S++ L AK ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTENG-VTALQMDIKIDGLSREILDEALQQAKKGRMQILN 536 Query: 233 LQKDVISNE 241 I+ Sbjct: 537 HMMSTIATP 545 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++ + ++K A G+ L+++GDT +L TA+ E K V + + G +P Sbjct: 15 RKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + + + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQNCSSEI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + +V+ E D+ Sbjct: 129 AAMFGSSLALS-------------VSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ ++ + ++I LI Q+++++ Sbjct: 176 HLTVAGTKDA-INMVEAGADEVP--EEVMLEAIMFGHEQIKKLIAFQEEIVA 224 >gi|85710513|ref|ZP_01041577.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1] gi|85687691|gb|EAQ27696.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1] Length = 762 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 95/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57 R+ GR+ +Q+R I + GS L G+T + T TL E++ + + Sbjct: 320 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLSYS 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R+ G ++ RALR V+ + I + D Sbjct: 380 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAFRALRPVLPDAEEFPYTIRVLSD 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D + + + +L+G A+ + D+ Sbjct: 436 ITESNGSSSMATVCGGALSMMDAGVPLARPVSGIAMGLILEGEDFAV---------LSDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D ++ G I +Q + A +Q+ L AK A ++ Sbjct: 487 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKVAGITQEIMTQALEQAKAGRAHILGEMAKA 545 Query: 238 I 238 + Sbjct: 546 L 546 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 42/240 (17%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A+G+ L +G+T +L +++E + + + G +P Sbjct: 16 LTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEKFSAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR-- 126 G KRE GR + R+I R R + I + V+ DG T Sbjct: 75 --GGFFKRE---GRATEKETLTSRLIDRPCRPLFPEGFYNE--INVIAQVLSYDGETEPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG----E 181 A+ A AL G + A G G +++ E Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGFTNDGEYVLNPTVADALGE 174 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA----KDRIADLIKLQKDV 237 D + D T ++ V+ +E +++ + A + I +I+L + Sbjct: 175 DGRL--DLVVAATQDA-VMMVE--SEAKELTEEEMLGAVMFAHEESRKVIGAIIELAEQA 229 >gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii WM276] gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p [Cryptococcus gattii WM276] Length = 262 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 90/242 (37%), Gaps = 21/242 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59 +R R+ ++R S ++GS G T ++ + + + + + Sbjct: 14 LRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVVVSVFGPREPRNRSLASHDRAVV 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + E G++P + G +R R R QEI I + V+ +I I V+ Sbjct: 74 SVEVGVVPWAAGAGARRT----RGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGG +I +AL D + D +V++IS G+ P++DL Sbjct: 130 SADGGILPTSINATTLALIDAGISLLD-------------YVSSISIGLHLLQPLLDLSQ 176 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+S + + SG I Q D F ML L + L + V+ Sbjct: 177 PEESDLPSLVIASLPSSGKITLAQM---ETRLHVDRFEEMLTLGVEACKVLKEEMDGVVK 233 Query: 240 NE 241 + Sbjct: 234 DR 235 >gi|294500891|ref|YP_003564591.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM B1551] gi|294350828|gb|ADE71157.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM B1551] Length = 708 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLSVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ I + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPNEKDFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKSGEHYS 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G + +Q + S++ L AK ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTENG-VTALQMDIKIDGLSREILDEALQQAKKGRMQILN 536 Query: 233 LQKDVISNE 241 I+ Sbjct: 537 HMMSTIATP 545 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++ + ++K A G+ L+++GDT +L TA+ E K V + + G +P Sbjct: 15 RKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + + + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQNCSSEI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + +V+ E D+ Sbjct: 129 AAMFGSSLALS-------------VSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ ++ + ++I LI Q+++++ Sbjct: 176 HLTVAGTKDA-INMVEAGADEVP--EEVMLEAIMFGHEQIKKLIAFQEEIVA 224 >gi|114798182|ref|YP_762114.1| polynucleotide phosphorylase/polyadenylase [Hyphomonas neptunium ATCC 15444] gi|123128295|sp|Q0BWM9|PNP_HYPNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114738356|gb|ABI76481.1| polyribonucleotide nucleotidyltransferase [Hyphomonas neptunium ATCC 15444] Length = 713 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 94/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+ +Q+R I GS L G+T + ATL +E+ + TK Sbjct: 317 RIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGTSDDEQYIDGLDGTKKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RAL++V+ I + + Sbjct: 377 KFMLHYNFPPYSVGETGRMGGAGRREIGHG----KLAWRALKAVLPKHEDFPYTIRMVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +A+ D + + + +L+G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G + +Q + A ++D L AK ++ Sbjct: 484 LGDEDHLGDMDFKVAGTENG-VTSLQMDIKVAGITKDIMGKALEQAKGGRMHILGEMGKA 542 Query: 238 I 238 + Sbjct: 543 L 543 Score = 82.1 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 84/239 (35%), Gaps = 44/239 (18%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R +++ V++ A+G+ +V++GDT +L TA ++ +T Y ++ Sbjct: 14 RTLTIETGQVARQADGAVMVQYGDTIVLATAVFAKEAKP---GQDFFPLTVNYQEKYFAS 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + R+I R +R + Q+++ + Sbjct: 71 GRIPGGFFKRE---GRPTEKETLTSRLIDRPIRPLFVDGFKHEVQVVVTTLSYDLENDAD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G + A G G I++ E + Sbjct: 128 IIALVGASAALVLSGA-------------PFMGPIGAARVGYKDGQYIINPTIAELEESE 174 Query: 187 VDANFV-MTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229 +D TD+ +VE Q A S+D A++ LA+ + Sbjct: 175 LDLVVAGTTDAVMMVESQA----AELSEDVMLGAVVAGHDAMQPVIDAIIALAEKAAKE 229 >gi|294011612|ref|YP_003545072.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum UT26S] gi|292674942|dbj|BAI96460.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum UT26S] Length = 771 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR Q+R I GS L G+T + T TL K + + G Sbjct: 316 RIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLTGLHYE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G ++ RAL V+ I + D Sbjct: 376 SFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHPVLPSKEEFPYTIRVLSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D ++ + + +L+G A+ I D+ Sbjct: 432 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFAV---------ISDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A +Q+ F L AK+ A ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKA 541 Query: 238 ISN 240 +S+ Sbjct: 542 LSS 544 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 27/225 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++L +++ A+ + L +G+T +L T + V +T Y S Sbjct: 16 LTLETGRIARQADAAVLATYGETVVLCAVTAAKSV---KEGQDFFPLTVHYQ-EKYSAAG 71 Query: 73 RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128 R+ +G +E + R+I R +R + I + V+ DG Sbjct: 72 RIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNE--INVIAQVLSFDGESEPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ A AL G + A G G ++ E T ++D Sbjct: 130 AMIAASAAL-------------TLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 T + ++ V+ +E S+D + A + ++ Sbjct: 177 LVVAATGNA-VMMVE--SEAKELSEDVMLGAVLFAHEASKKVVNA 218 >gi|225551703|ref|ZP_03772647.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1] gi|225371730|gb|EEH01156.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1] Length = 722 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + ++L +KG VA I+ G++ Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++D L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535 Query: 233 LQKDVISN 240 + VISN Sbjct: 536 IMNTVISN 543 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPFSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A S+D + ++ A + I + QK+ + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFL 221 >gi|332976846|gb|EGK13671.1| polyribonucleotide nucleotidyltransferase [Desmospora sp. 8437] Length = 697 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 84/248 (33%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKHG 57 R GR ++R ++ + GS + G T +L T A + ++ + + Sbjct: 315 RPDGRSPEEIRPLTSEVGILPRTHGSGHFRRGQTQVLSVCTLGALGDVQILDGLDLEESK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R+ G + RAL V+ I + + Sbjct: 375 RFMHHYNFPPYSVGESRPMRGPGRREIGHG----ALGERALEPVIPSEEEFPYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V++++G T A+I + +AL D +K VA I+ G++ Sbjct: 431 VLESNGSTSQASICASTLALMDAGV-------------PIKDPVAGIAMGLVKEGDQVTV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + ++ L A L+ Sbjct: 478 LTDIQGMEDHLGDMDFKVAGTRKG-VTALQMDIKIEEIDREVLSQALQQAHRARHVLLDN 536 Query: 234 QKDVISNE 241 + Sbjct: 537 MTATLGEP 544 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 89/234 (38%), Gaps = 28/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R +++ + A G+ LV++GDT ++ TAT ++ ++ +T Y + Sbjct: 14 RRLTMEVGKYANQANGAVLVRYGDTAVMATATASDE----PKDLGFFPLTVNYEERLYAV 69 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR ++ R+I R +R + Q++ + D T Sbjct: 70 GKIPGGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGYRNDVQVVTTVMSVDQDCSTE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G +A + G + G +++ + D Sbjct: 127 IAAMIGASTALS-------------ISDIPFAGPIAGVIVGRVNGKWVLNPSVEQAEKSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T G I V+ A+ ++ + + I ++I Q+ ++ Sbjct: 174 LHLVVAGTKHG-INMVEAGADEVP--EEVMLEGILFGHEAIKEMIAFQEKIVGQ 224 >gi|315051732|ref|XP_003175240.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893] gi|311340555|gb|EFQ99757.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893] Length = 278 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 81/247 (32%), Gaps = 10/247 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59 +RL GR+ N++R + + + GS + G+T +L T + I Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + +R K+ A G R + E+ ++ A + + I I Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANLLRDAFQPHIHAHLYPRSTISIHVS 133 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC-----GMLCGY 172 V+ +DG A + +AL D M + L A + Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGWGGINESLDPLLDISAPEEVELPYMTVANTN 193 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 P+ D++ D + D + + ++ + + + M + D + Sbjct: 194 PMPDINVPRDDEDEEDDEYDAENENQMLSIV--HMDSGVHVSYLETMFAVGIDGCKQTRE 251 Query: 233 LQKDVIS 239 + V+ Sbjct: 252 ILNGVLK 258 >gi|306820072|ref|ZP_07453720.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551850|gb|EFM39793.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 690 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R R + ++R I V GS + G T +L+ ATL E + + + Sbjct: 311 VRPDNRAQEEIRPIWCEAGVLPRTHGSAIFTRGQTQVLSVATLAGLSEAQTIDGLDEEEE 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G S G R + RA+ ++ I + Sbjct: 371 RRYMHHYNFPAFSVGEAR----ASRGPGRREIGHGALAQRAIEPLLPSEEEFPYTIRVVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V+ ++G T A++ G+ + L D M K VA I+ G++ Sbjct: 427 EVMSSNGSTSQASVCGSTLCLLDAGVPM-------------KDMVAGIAMGLIKDEEDVV 473 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I +Q + + +D L A++ ++ Sbjct: 474 ILSDIQGMEDFLGDMDFKVAGTEKG-ITAIQMDIKISGIDEDILKRALAQAREGRLHILG 532 Query: 233 LQKDVISNE 241 + VI Sbjct: 533 EMRKVIDKP 541 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 87/236 (36%), Gaps = 28/236 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +++ A G+C +++GDT LL TAT +E + + + G + Sbjct: 12 RTLTVETGKLAQMANGACTLRYGDTVLLVTATNSAKPKEGIDFFPLSVDFEEKLYSAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G+ ++RE G+ ++ R+I R +R + Q++ + D Sbjct: 72 P---GSFIRRE---GKPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSVDIDHNP- 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D + + S G ++S G++ G I++ + + D Sbjct: 125 ------------DTIAMIGSSIALSISSIPFNGPTGSVSVGLVDGQFIINPTFEQREKSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 + T I+ V+ + S++ + A + I + I+NE+ Sbjct: 173 MYLVVSGTKDA-IMMVEAGSNE--VSEEVMLNAILFAHEEIKKICDFV-QSIANEI 224 >gi|30248196|ref|NP_840266.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas europaea ATCC 19718] gi|81584849|sp|Q82XT0|PNP_NITEU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|30180081|emb|CAD84083.1| pnp; polyribonucleotide nucleotidyltransferase protein [Nitrosomonas europaea ATCC 19718] Length = 708 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 28/246 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTKH 56 R+ GR +R I++ V GS L G+T L TA E+K+ ++ Sbjct: 315 RIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALAITTLGTARDEQKIDA-LQGDYS 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y M P +TG + R+ G R+ RAL +V+ + + Sbjct: 374 ERFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALLAVIPPVEEFGYSMRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V +++G + A++ G ++L D LK HVA I+ G++ Sbjct: 430 EVTESNGSSSMASVCGGCLSLMDAGV-------------PLKAHVAGIAMGLIKEGNRFA 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I +Q + +++ L AK+ +++ Sbjct: 477 VLTDILGDEDHLGDMDFKVAGTEHG-ITALQMDIKIQGITKEIMQVALLQAKEGRLHILE 535 Query: 233 LQKDVI 238 + K + Sbjct: 536 IMKQSL 541 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 36/237 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ ++K A G+ +V DT +L TA + + + G +P Sbjct: 15 LTIETGEIAKQAHGAVIVSMDDTVVLVTAVGDKKTKPGQDFFPLTVDYQEKFYSAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV----IQADGG 124 G+ KRE GR + R+I R +R + Q++ I AD Sbjct: 74 --GSFFKRE---GRPSEKETLTSRLIDRPIRPLFPDGFYNEVQVVAMVLSSDTEIDAD-- 126 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ G AL G V A G + I++ Sbjct: 127 --IPAMIGTSAALILSGI-------------PFDGPVGAARVGYINNEYILNPTTT--QL 169 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 + N V+ + V + S E S+D + D++ +I + + +++E Sbjct: 170 KESQLNLVVAGTQKAVLMVES-EADELSEDVMLGAVTYGHDQMQQVIDMINE-LADE 224 >gi|195941985|ref|ZP_03087367.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi 80a] gi|312147830|gb|ADQ30489.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi JD1] Length = 716 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 309 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 368 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 369 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 423 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + ++L +KG VA I+ G++ Sbjct: 424 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 470 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++D L A+ ++ Sbjct: 471 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 529 Query: 233 LQKDVISN 240 + VISN Sbjct: 530 IMNTVISN 537 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 4 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 58 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 59 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 112 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 113 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 159 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A +D + ++ A + I + QK+ + Sbjct: 160 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 215 >gi|303229604|ref|ZP_07316392.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a] gi|302515729|gb|EFL57683.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a] Length = 689 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55 +R GR+ +++R IS V GS L G T +L AT+ I T+ Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGIGLETE 368 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y S G R+ G + RAL V+ + + Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEEFPYALRLV 423 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G + +Q + + S++ L A ++ Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILHEALEQAHKGRMHIM 529 Query: 232 KLQKDVISNE 241 + D I+ Sbjct: 530 GIMLDTIAEP 539 Score = 88.2 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 28/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAIGRLP 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KREA R + R+I R +R + D ++ + D Sbjct: 71 ---GGFIKREA---RPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAI 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + GA AL G +A + G + G +V+ + Sbjct: 125 CGMIGASAALS-------------ISDIPWAGPIAGVRMGRVNGEFVVNPTKA--QLEET 169 Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D N V+ I+ V+G A+ ++ ++ A + I ++ Q+DV Sbjct: 170 DLNIVVAGTKDAILMVEGGAQEVP--EETILEVIMAAHEEIKKIVAFQEDV 218 >gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H 168] gi|254782723|sp|B8CW78|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H 168] Length = 705 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R I GS + G T L+ TL +E++ + + Sbjct: 320 IRPDGRKPDEIRPIWCEVGTLPRVHGSGVFTRGQTQALSVVTLGATSDEQILFGLGEEET 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G R + RAL+ V+ I + Sbjct: 380 KRYMHHYNFPPYSVGE----TSPLRSPGRREIGHGALGERALQPVIPDQEEFPYTIRVVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +AL D +K VA I+ G+L Sbjct: 436 EVLESNGSTSQASICGSTLALMDAGV-------------PIKEPVAGIAMGLLKEDEKVV 482 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I +Q + S++ L A++ ++ Sbjct: 483 ILSDIQGLEDFYGDMDFKVAGTRNG-ITALQMDIKIHGISKEILKKALKRAREGRLYILD 541 Query: 233 LQKDVISNE 241 VI Sbjct: 542 KMLQVIDKP 550 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 26/228 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++ +K A GS + ++GDT +L TAT E + + + G +P Sbjct: 13 KMKFETGKYAKQANGSVVARYGDTTVLVTATMSEPREGIDYFPLMVNYEERVYAIGKIPG 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 S +RE GR + R+I R LR + QII + D Sbjct: 73 SI---TRRE---GRPRDVATLAARLIDRPLRPLFPEGFRHDVQIIATVLSVDNDCEPDIL 126 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA VAL G + + G++ G +++ D E +D Sbjct: 127 ALNGASVAL-------------TLSDIPFDGPIGGVKVGLVDGELVINPDEEEREKSKLD 173 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T ++ V+ A S+D + LA I L+ LQ++ Sbjct: 174 LTVAGTRDA-VLMVEAGANE--VSEDVMLDAIELAHQEIKRLVLLQEE 218 >gi|303232084|ref|ZP_07318787.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6] gi|302513190|gb|EFL55229.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6] Length = 689 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55 +R GR+ +++R IS V GS L G T +L AT+ I T+ Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGIGLETE 368 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y S G R+ G + RAL V+ + + Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEEFPYALRLV 423 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G + +Q + + S++ L A ++ Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILHEALEQAHKGRMHIM 529 Query: 232 KLQKDVISNE 241 + D I+ Sbjct: 530 GIMLDTIAEP 539 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 28/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAIGRLP 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KREA R + R+I R +R + D ++ + D Sbjct: 71 ---GGFIKREA---RPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAI 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + GA AL G +A + G + G +V+ + Sbjct: 125 CGMIGASAALS-------------ISDIPWAGPIAGVRMGRVNGEFVVNPTKA--QLEET 169 Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D N V+ I+ V+G A+ ++ ++ A + I ++ Q+DV Sbjct: 170 DLNIVVAGTKDAILMVEGGAQEVP--EETILEVIMAAHEEIKKIVAFQEDV 218 >gi|166154186|ref|YP_001654304.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis 434/Bu] gi|166155061|ref|YP_001653316.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335431|ref|ZP_07223675.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis L2tet1] gi|226702634|sp|B0B971|PNP_CHLT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702636|sp|B0BAV0|PNP_CHLTB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|165930174|emb|CAP03658.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis 434/Bu] gi|165931049|emb|CAP06612.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 695 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R+ GR ++R IS+ + GSCL G+T + T E + + Sbjct: 314 IRVDGRTTTEIRPISIETPLLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL V+ ++ I ++ Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + L AK + ++ Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535 Query: 233 LQKDVISNE 241 L V+++ Sbjct: 536 LMTQVLASP 544 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 87/238 (36%), Gaps = 39/238 (16%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68 +++ A G+ LVK +T + A+L E V P + + + R Sbjct: 18 FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVGFLPFRVDYQEK------FSSAGR 71 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR-- 126 ++G +KRE GR R + R+I R+LR + Q++ DG T Sbjct: 72 TSGGFLKRE---GRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA AL +A + G++ G +++ E S Sbjct: 127 PLAICGASAALA-------------ISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASK 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241 +D T S ++ ++G +++ + + IA + I+ + I + Sbjct: 174 LDLVMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228 >gi|88607778|ref|YP_505346.1| polynucleotide phosphorylase/polyadenylase [Anaplasma phagocytophilum HZ] gi|123494955|sp|Q2GJV5|PNP_ANAPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88598841|gb|ABD44311.1| polyribonucleotide nucleotidyltransferase [Anaplasma phagocytophilum HZ] Length = 838 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 92/244 (37%), Gaps = 20/244 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATLEEK----VPMWIRNTKH 56 R+ GR +Q+R I + + A GS L GDT L TA + V + + + Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P + G + G R ++ RA+ V+ A I + Sbjct: 383 RFL-LHYNFPPYAVGE----ASALRPPGRREIGHGKLAWRAIHPVLPSKADFPYTIRVVS 437 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ ++DG + A + GA +AL D ++ + + +G AI + D Sbjct: 438 EITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAI---------LSD 488 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + L+ AK+ +I+ Sbjct: 489 ILGDEDYLGDMDFKVAGTREG-ITALQMDMKVKGIDFAVLGTALDQAKEGRFFIIEKMDR 547 Query: 237 VISN 240 VI Sbjct: 548 VIKE 551 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 32/230 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R +++ +++ A G+ +V +G T +L T +E V + + G +P Sbjct: 14 RSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQKSKEAVDFLPLTVQFLAKSYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--T 125 G KRE G+ R I R+I R++R + + + C+++ D Sbjct: 74 ---GGFFKRE---GKPSDRETLISRIIDRSIRPLFPSGFSDE--VAVVCNLLSYDASSPP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDS 183 T A+ GA AL VA G + G I++ E S Sbjct: 126 ETVALIGASAALAISGI-------------PFHCPVAGARIGYIRGEGRYILNPSADELS 172 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D + TD+ I+ V+ +E ++ L + ++IK+ Sbjct: 173 VSALDMFYARTDT-SILMVE--SEAHELTEAEMLGALQFGHEHCEEIIKV 219 >gi|224533452|ref|ZP_03674045.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi CA-11.2a] gi|224513414|gb|EEF83772.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi CA-11.2a] Length = 722 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + ++L +KG VA I+ G++ Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++D L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535 Query: 233 LQKDVISN 240 + VISN Sbjct: 536 IMNTVISN 543 Score = 89.0 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A +D + ++ A + I + QK+ + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 221 >gi|226320852|ref|ZP_03796404.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 29805] gi|226233718|gb|EEH32447.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 29805] Length = 722 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + ++L +KG VA I+ G++ Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++D L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535 Query: 233 LQKDVISN 240 + VISN Sbjct: 536 IMNTVISN 543 Score = 89.0 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A +D + ++ A + I + QK+ + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 221 >gi|221217569|ref|ZP_03589038.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 72a] gi|225549375|ref|ZP_03770347.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 94a] gi|225550249|ref|ZP_03771208.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 118a] gi|221192515|gb|EEE18733.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 72a] gi|225369117|gb|EEG98571.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 118a] gi|225370003|gb|EEG99444.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi 94a] Length = 722 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + ++L +KG VA I+ G++ Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++D L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535 Query: 233 LQKDVISN 240 + VISN Sbjct: 536 IMNTVISN 543 Score = 89.0 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A +D + ++ A + I + QK+ + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 221 >gi|15595150|ref|NP_212939.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi B31] gi|216264741|ref|ZP_03436733.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 156a] gi|218249358|ref|YP_002375304.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7] gi|223889336|ref|ZP_03623923.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 64b] gi|226321270|ref|ZP_03796798.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi Bol26] gi|81343023|sp|O51745|PNP_BORBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702621|sp|B7J0Q1|PNP_BORBZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|2688743|gb|AAC67149.1| polyribonucleotide nucleotidyltransferase (pnpA) [Borrelia burgdorferi B31] gi|215981214|gb|EEC22021.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 156a] gi|218164546|gb|ACK74607.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7] gi|223885257|gb|EEF56360.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia burgdorferi 64b] gi|226233302|gb|EEH32053.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi Bol26] Length = 722 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + ++L +KG VA I+ G++ Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++D L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535 Query: 233 LQKDVISN 240 + VISN Sbjct: 536 IMNTVISN 543 Score = 89.0 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A +D + ++ A + I + QK+ + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 221 >gi|313892760|ref|ZP_07826341.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral taxon 158 str. F0412] gi|313442691|gb|EFR61102.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral taxon 158 str. F0412] Length = 689 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55 +R GR+ +++R IS V GS L G T +L AT+ I T+ Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDGIGIETE 368 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y S G R+ G + RAL V+ A + + Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEADFPYALRLV 423 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G + +Q + + S++ L A ++ Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIM 529 Query: 232 KLQKDVISNE 241 + D I+ Sbjct: 530 GIMLDTIAEP 539 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 28/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KREA R + R+I R +R + D ++ + D Sbjct: 71 ---GGFIKREA---RPPETAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAV 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + GA AL G +A + G + G +V+ + Sbjct: 125 CGMIGASAALS-------------ISDVPWNGPIAGVRMGRINGEFVVNPTKA--QLEET 169 Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D N V+ I+ V+G AE +D ++ A + I ++ Q+D+ Sbjct: 170 DLNIVVAGTKDAILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQEDM 218 >gi|220934183|ref|YP_002513082.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp. HL-EbGR7] gi|254782744|sp|B8GP06|PNP_THISH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219995493|gb|ACL72095.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp. HL-EbGR7] Length = 693 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I++ V GS L G+T + ATL + + Sbjct: 315 RIDGRDTRTVRPITVKTGVLPRTHGSALFTRGETQAIVVATLGTDRDAQLIEAIEGERRE 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + R+ G R+ R +++V+ A + + + Sbjct: 375 RFMLHYNFPPFCTGETGMVGSPKRREIGHG----RLAKRGVQAVMPGEAECPYVLRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + + +G A+ I D+ Sbjct: 431 ITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDAFAV---------ISDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D + G + +Q + +++ L AK+ +++ V Sbjct: 482 LGDEDHLGDMDFKVAGSKDG-VSALQMDIKIDGITREIMEKALAQAKEGRLHILEKMNAV 540 Query: 238 ISNE 241 +S Sbjct: 541 LSEP 544 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++ +++ A G+ LV DT +L TA + V + +T Y + G Sbjct: 15 VTFETGEIARQASGAVLVNMADTVVLVTAVGLKDV---AQGRDFFPLTVNYQERTYAAGR 71 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR + R+I R +R + + Q+I + + Sbjct: 72 IPGGFFKRE---GRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVMSMNPEVDPDVP 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL KG + A G L G +++ E D+D Sbjct: 129 AMLGASAALALSGL-------------PFKGPIGAARVGYLNGAYVLNPSMSELKHSDLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237 T+ ++ +E S++ + + I + +L + Sbjct: 176 LVVAGTEKAVLMV---ESEAKLLSEEVMLGAVMYGHEQMQAAIKVINELAAEA 225 >gi|312149591|gb|ADQ29662.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi N40] Length = 716 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 309 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 368 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 369 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 423 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + ++L +KG VA I+ G++ Sbjct: 424 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 470 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++D L A+ ++ Sbjct: 471 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 529 Query: 233 LQKDVISN 240 + VISN Sbjct: 530 IMNTVISN 537 Score = 88.6 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 4 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 58 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 59 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 112 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 113 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 159 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A +D + ++ A + I + QK+ + Sbjct: 160 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 215 >gi|78187489|ref|YP_375532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium luteolum DSM 273] gi|123582727|sp|Q3B2E2|PNP_PELLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78167391|gb|ABB24489.1| Polyribonucleotide nucleotidyltransferase [Chlorobium luteolum DSM 273] Length = 732 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR Q+R I++ V A GS L G+T L TL K + N+ Sbjct: 332 RLDGRNLEQVRPITIELGVIPRAHGSALFTRGETQALVAVTLGTKKDAQSVDTLTNSADK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + R+++ V + I + Sbjct: 392 RFMLHYNFPPFSVGEVGRLGSTGRREIGHG----NLAERSIKMVAPGEQEFPYTVRIVSE 447 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +AL D ++ + + + G A+ + D+ Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPLKKPVSGIAMGLIKDGEEYAV---------LSDI 498 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + L A+ ++ ++ Sbjct: 499 LGNEDHLGDMDFKVAGTRDG-ITACQMDIKIDGLDYHILENALAQARRGRFHILDKMEEA 557 Query: 238 I 238 I Sbjct: 558 I 558 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 29/235 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGMLP 67 IS+ K A+G+ +V+ GDT ++ T K P + ++ G P Sbjct: 15 ISIETGRMAKQADGATVVRMGDTMVIATVVSSRKTPSVNQDFFPLQVEYREKYYAAGKFP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA R + R+I RALR + Q+II+ VI +D Sbjct: 75 ---GGFFKREA---RPSEKEILSARLIDRALRPLFPTGYYHETQVIIN--VISSDQQN-D 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A + G A + + ++ + G + G I++ E D+ Sbjct: 126 ADVLGGLAA----------SAAIMVSDIPFENAMSEVRVGRVNGLFIINPTIDELEGSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D + T I ++G E S+ + + I L +LQ + ++ EV Sbjct: 176 DISIGGTAD-TICMLEG--EMKEISEAEMLDAIKFGHEAIKKLCQLQNE-LAGEV 226 >gi|319937430|ref|ZP_08011836.1| septum formation protein maf [Coprobacillus sp. 29_1] gi|319807447|gb|EFW04051.1| septum formation protein maf [Coprobacillus sp. 29_1] Length = 895 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G+T +L T A E + + Sbjct: 318 IRPDGRKIDEVRPLNAQIDLLPRVHGSALFTRGETQVLSVCTLGALGEHQKIDGLGLEDQ 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + RAL V+ I + Sbjct: 378 KRFMHHYNFPPYSVGETGR----MGAPGRREIGHGALGERALAQVIPSEDEFPYTIRLVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I + +AL + V+ ++ G++ Sbjct: 434 EVLESNGSSSQASICASSMALMTAGV-------------PISNPVSGVAMGLVKKGDDYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +++ L A ++ Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTKKG-ICALQMDIKIEGITKEILQEALAQANVGRQQIMD 539 Query: 233 LQKDVISNE 241 I+ Sbjct: 540 CMLGAIAEP 548 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 28/231 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +++ ++K A GS LV++ DT +L+TA + V + + G +P Sbjct: 15 LTVEAGELAKQANGSVLVRYDDTVILSTAVAGKEPKDVDFFPLTVTYEEKLYSVGKIP-- 72 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR RMI R +R + Q++ + + AA Sbjct: 73 -GGFLKRE---GRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQNASPEMAA 128 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS-TIDVD 188 + GA +AL G +A ++ G++ G ++ ED ++ Sbjct: 129 MFGASLALC-------------LSDIPFNGPIAGVNVGLIDGEFTIN-AGPEDMERSLIN 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ ++ L D+I +LI Q+ V+ Sbjct: 175 LEVAGTKEA-INMVEADAKE--VDEETMLNALMFGHDKIKELIAFQEKVVE 222 >gi|154249089|ref|YP_001409914.1| polynucleotide phosphorylase/polyadenylase [Fervidobacterium nodosum Rt17-B1] gi|187610262|sp|A7HK24|PNP_FERNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|154153025|gb|ABS60257.1| Polyribonucleotide nucleotidyltransferase [Fervidobacterium nodosum Rt17-B1] Length = 693 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR +R I+ + GS L G+T L TL EE++ + Sbjct: 318 LRADGRGPKDIRPITCEVGLLPRTHGSSLFTRGETQSLGIVTLGSPAEEQIIDTLIEEGT 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RA+++++ I + Sbjct: 378 KRFILHYNFPPFSTGEVKPLRGPSRREIGHGH----LAERAVKAIIPPEDEFPYVIRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 ++++++G + A + A +AL D K HVA ++ G++ G Sbjct: 434 EILESNGSSSMATVCSASLALMDAGV-------------PTKKHVAGVAMGLILEEGKGV 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + S++ L AK+ ++ Sbjct: 481 ILTDIIGLEDHWGDMDFKVAGTKDG-ITAFQMDCKVSGVSEELLRQALYQAKEARMFILD 539 Query: 233 LQKDVISNE 241 + IS Sbjct: 540 KLYETISEP 548 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 28/226 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-----GNRV 74 V+K + GS +FGD+ +L T + + V + +T E+ M G V Sbjct: 20 VAKQSAGSIWARFGDSVVLATVNVSDNV---VEGIDFVPLTVEF-MEKFYAAGKIPGGFV 75 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE G+ R+I R +R + + Q+I+ + + T IT A Sbjct: 76 KRE---GKPSESGILSSRLIDRPIRPLFPKNLRNEVQVIVTVLSVDPNCPTDVLGITAAS 132 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194 +AL+ G VA + G + G IV + +D T Sbjct: 133 LALN-------------ISRVPFDGIVAGVQIGYVDGQFIVFPTAEQLERSKIDIVVAGT 179 Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 I V+G A+ +++ L A + I ++ Q++VI Sbjct: 180 KDA-ITMVEGEAKE--VTEEEMLQALMTAHEAIKQIVAFQEEVIKE 222 >gi|313608969|gb|EFR84717.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL F2-208] Length = 424 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 17 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 76 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 77 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 132 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 133 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 179 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 180 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 238 >gi|224533071|ref|ZP_03673676.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi WI91-23] gi|224512007|gb|EEF82403.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi WI91-23] Length = 722 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + ++L +KG VA I+ G++ Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++D L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535 Query: 233 LQKDVISN 240 + VISN Sbjct: 536 IMNTVISN 543 Score = 88.6 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A +D + ++ A + I + QK+ + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 221 >gi|66824695|ref|XP_645702.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4] gi|60473889|gb|EAL71828.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4] Length = 217 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 72/226 (31%), Gaps = 24/226 (10%) Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 + V GS V+ +T +L T + + E S+ Sbjct: 1 MKIGVVSQGSGSSYVEMENTKVLCTIHGPRATQK-TELFETAKLNCELKYTTFSSTTEKI 59 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 + ++ +++ +I +++ + L I I V+ DG A+IT A + Sbjct: 60 DYVENSKE----KDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATM 115 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANFV-- 192 AL D M D V++ S ++D E++ V Sbjct: 116 ALADAGVEMFD-------------MVSSCSVSCTKDNRTLIDPTTLEETIPSSSTVLVAK 162 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 M I ++ + E + ++L D + + K + Sbjct: 163 MPSLNEITQIIQTGE---LQYTNVLECVDLCIDGCDKIYSIMKQNL 205 >gi|311068192|ref|YP_003973115.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus 1942] gi|310868709|gb|ADP32184.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus 1942] Length = 705 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +Q+R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRGVDQIRPLSSEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ I + Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + S++ L AK +++ Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKKGRMEILS 536 Query: 233 LQKDVISN 240 + + Sbjct: 537 SMLNTLGE 544 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ ++++GDT +L TA+ E K + + + G +P Sbjct: 15 RKLTVETGQLAKQANGAVMIRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + I++ + D+ Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDNQFIINPTVDQLEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ ++ + + I LI Q+++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EETMLEAIMFGHEEIKRLIAFQEEIVA 224 >gi|255076363|ref|XP_002501856.1| predicted protein [Micromonas sp. RCC299] gi|226517120|gb|ACO63114.1| predicted protein [Micromonas sp. RCC299] Length = 232 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 25/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59 R GR QMR I + V A GS V+ T ++ + I G + Sbjct: 5 REDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRL 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + +T QG +E ++ RAL V + + V+ Sbjct: 65 DVDVKLATFATSG----PRGKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFATVL 120 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDL 177 +A+G A I A AL + M D V+A + G G ++D Sbjct: 121 EANGSELCATIAAASAALCEAGVAMRDL-------------VSACTGGGADGPNALLLDP 167 Query: 178 -DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E + M G +V + T+ + + LA A + ++ Sbjct: 168 ARGEEAAAEAGVTLAYMCRLGEASQVVATG---TWDGESLDDAVQLAASGCARVDAALRE 224 Query: 237 VISNEV 242 + + V Sbjct: 225 ALRSSV 230 >gi|169350006|ref|ZP_02866944.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552] gi|169293219|gb|EDS75352.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552] Length = 710 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G+T +L+ AT E + + Sbjct: 318 IRPDGRRLDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEHQKIDGLGLEDQ 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + RAL V+ + I + Sbjct: 378 KRFMHHYNFPPYSVGEVGR----MGAPGRREIGHGALGERALAQVIPGEDVFPYTIRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I + +AL +K VA ++ G++ Sbjct: 434 EVLESNGSSSQASICASSMALMAAGV-------------PIKAPVAGVAMGLVKKGDDYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D TD G I +Q + +++ L AK +++ Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTDEG-ICALQMDIKIDGITKEILQEALAQAKVARREIMA 539 Query: 233 LQKDVISNE 241 VI+ Sbjct: 540 NMMAVINEP 548 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 26/231 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68 +S+ ++K A GS LV++ DT +L+T + V + + G +P Sbjct: 14 NLSVEIGELAKQANGSVLVRYNDTVILSTVVAGKEPKDVDFFPLTVTYEEKLYSVGKIP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR RMI R +R + Q + + D A Sbjct: 73 --GGFLKRE---GRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDASPEMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA +AL G +A ++ G++ G IV+ + ++ Sbjct: 128 AMLGASLALC-------------VSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLERSLIN 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ L ++I +LI Q+ V+ Sbjct: 175 LEVAGTKDA-INMVEADAKE--VSEEVMLEALLFGHEKIKELIAFQEKVVE 222 >gi|152993469|ref|YP_001359190.1| polynucleotide phosphorylase/polyadenylase [Sulfurovum sp. NBC37-1] gi|187611305|sp|A6QBH4|PNP_SULNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151425330|dbj|BAF72833.1| polyribonucleotide nucleotidyltransferase [Sulfurovum sp. NBC37-1] Length = 729 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54 +R GR +++R I++ + GSCL G T L TATL +K + +NT Sbjct: 344 IRADGRGLDEVRPITIETNILPSVHGSCLFTRGQTQALVTATLGDKKDAQMFELITDKNT 403 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y S G A R+ G + RAL V+ ++ G I + Sbjct: 404 QSENFMVHYNFPGYSVGEAKFIGAPGRRELGHG----NLAKRALEPVIPINYDG--TIRL 457 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 +V++++G + A I G +AL M + + V G A+ + Sbjct: 458 VSEVLESNGSSSMATICGGALALRAAEVDMVELVAGIAMGLVTDGERVAV---------L 508 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D T +G I +Q + L A ++ L Sbjct: 509 TDIMGLEDHDGDMDFKIAGTRNG-ITALQMDIKLGGIDLITLKVALEKAAQGKDHILDLM 567 Query: 235 KDV 237 ++ Sbjct: 568 EEA 570 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 78/233 (33%), Gaps = 31/233 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75 ++K A G+ + + G L+ ++EK +T +Y + G +K Sbjct: 22 IAKQASGAVMYRQGKAVLIAAVAVDEKA----VEEDFLPLTVQYMERSYAAAKIPGGFIK 77 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE + G R++ R+LR + I + ++ Sbjct: 78 RET---KPGDFETLTSRIVDRSLRPLFPKGFYYPVTISVMV-------------VSSDSE 121 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 + + ++ +AA+ G + +++ + +D V ++ Sbjct: 122 VDMQVAALHAANAALYVSDISVQRSIAAVRVGKIEDELVLNPTLSQQDESVLDLLVVGSE 181 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK------DVISNEV 242 I+ ++ A + D M++ + +++ Q+ + + + + Sbjct: 182 QD-IIMIEMRAIASEKIDDIEMDMIDPMMGGVPLILEHQECNEVDNEALVDAI 233 >gi|322435940|ref|YP_004218152.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp. MP5ACTX9] gi|321163667|gb|ADW69372.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp. MP5ACTX9] Length = 817 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 18/244 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTK--H 56 +R R +Q+R +++ V GS L G+T L +ATL + T Sbjct: 314 IRPDHRAFDQIRLVTVETGVLPRVHGSALFTRGETQALVSATLGTTDDAQRMESYTGEFK 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + V R+ G + RA+ +V+ + + Sbjct: 374 RRFMLHYNFPPFSVGEVGRMTGVGRREIGHG----ALAWRAIEAVLPGEDESPYTLRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A + GA +AL ++ + V +G AI + D Sbjct: 430 DILESNGSSSMATVCGASLALMAAGIPLKGAVAGVAMGLVKEGDKYAI---------LTD 480 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + + L A+ +L+ Sbjct: 481 IAGAEDHYGDMDFKVAGTRKG-ITALQMDIKIMGITPQIMREALEQARRGRLELLDTMDA 539 Query: 237 VISN 240 IS+ Sbjct: 540 TISS 543 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 27/231 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 I K A G+ GD +L TA +E + + ++ T G +P Sbjct: 15 IKFETGRMAKQASGAAFTTSGDNAILATAVASPDPKEGIDFFPLTVEYREFTYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R I R +R + + Q++ + Sbjct: 74 --GGFIKRE---GRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADKENDPDVL 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 I GA AL G V A+ G++ G IV+ Y E +++ Sbjct: 129 GINGASCALA-------------LSDIPFHGPVGAVRVGLIEGNFIVNPTYAEREKSELN 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 V T G IV V+ ++ S++ + + A I + ++++ Sbjct: 176 IMVVGTADG-IVMVESGSKET--SEESVVSAIEFAHVEIKKICAAIEELVK 223 >gi|238019453|ref|ZP_04599879.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748] gi|237864152|gb|EEP65442.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748] Length = 689 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55 +R GR+ +++R IS V GS L G T +L AT+ I T+ Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDGIGLETE 368 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y S G R+ G + RAL V+ + + Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEEFPYALRLV 423 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G + +Q + + S++ L A ++ Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILHEALEQAHKGRMHIM 529 Query: 232 KLQKDVISNE 241 + D I+ Sbjct: 530 GIMLDTIAEP 539 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 28/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KREA R + R+I R +R + D ++ + D Sbjct: 71 ---GGFIKREA---RPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAI 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + GA AL G +A + G + G IV+ E Sbjct: 125 CGMIGASAALS-------------ISDIPWNGPIAGVRMGRINGEFIVNPTK-EQLEA-T 169 Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D N V+ I+ V+G A+ ++ ++ A + I ++ Q+D+ Sbjct: 170 DLNIVVAGTKDAILMVEGGAQEVP--EETILEVIMAAHEEIKKIVAFQEDM 218 >gi|328793187|ref|XP_623498.2| PREDICTED: exosome complex exonuclease MTR3-like isoform 1 [Apis mellifera] Length = 270 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 21/187 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R N+MR+I L + A+GS ++ G+T ++ + ++ G I Sbjct: 36 IRNDKRSNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCSQGEIY 95 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 E+ P S R + Q ++ ++ RAL + Q+ + V+ Sbjct: 96 CEFKFAPFSCQKRKIHQ-----QDAEEKQYSLILQRALEPA---HEFPNFQVDVYAMVLD 147 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 G + AAI A AL + M G V A + G+ + ++D Sbjct: 148 NAGSSLAAAIMAASTALANAGVPMF-------------GLVTASTIGIYDNHYLMDPTDT 194 Query: 181 EDSTIDV 187 E+ + Sbjct: 195 EEVICNT 201 >gi|16800436|ref|NP_470704.1| polynucleotide phosphorylase/polyadenylase [Listeria innocua Clip11262] gi|81526977|sp|Q92C23|PNP_LISIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|16413841|emb|CAC96599.1| polynucleotide phosphorylase (PNPase) [Listeria innocua Clip11262] Length = 723 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537 Query: 233 LQKDVISNE 241 IS Sbjct: 538 HLTSTISEP 546 Score = 95.2 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL +G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|148361082|ref|YP_001252289.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila str. Corby] gi|296108412|ref|YP_003620113.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|187610281|sp|A5IHU3|PNP_LEGPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148282855|gb|ABQ56943.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila str. Corby] gi|295650314|gb|ADG26161.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila 2300/99 Alcoy] Length = 729 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R IS+ + + GSCL G+T + ATL + I Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ RAL +V+ + + I + Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D ++ + + +G A+ + D+ Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + + + + L A + ++ + + Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNA 539 Query: 238 ISNE 241 ++ Sbjct: 540 LAEH 543 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRST 70 L V++ A+G+ + T +L T E + + G +P Sbjct: 17 LETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP--- 73 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR I R+I R +R + + QII + + A+ Sbjct: 74 GGFNKRE---GRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDIIAM 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL G + A G G +++ E +D Sbjct: 131 IGASAALS-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 T I+ V+ +E S+D + + K+ I + +L ++V Sbjct: 178 IAGTKDA-ILMVE--SEAQELSEDIMRGAMLYGHEMMKNVIKSIEELAREV 225 >gi|146308619|ref|YP_001189084.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina ymp] gi|145576820|gb|ABP86352.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas mendocina ymp] Length = 725 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 92/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R + + V GS L G+T L ATL + +T G Sbjct: 340 RIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 399 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R + +++ I + + Sbjct: 400 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRGVAAMLPKDDEFPYTIRVVSE 455 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + VL+G A+ + D+ Sbjct: 456 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAV---------LTDI 506 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L A + +++ V Sbjct: 507 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQV 565 Query: 238 ISN 240 IS Sbjct: 566 ISQ 568 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 76/231 (32%), Gaps = 31/231 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 ++L +++ A G+ LV + T +L T + + + + T G + Sbjct: 38 VTLETGRIARQASGAVLVTVDNDVT-VLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKI 96 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + + Q++ Sbjct: 97 P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 150 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 A++ G AL G + A +++ +Y + Sbjct: 151 IASMIGTSAALAVSGI-------------PFNGPIGAARVAFHPDTGYLLNPNYEQLKAS 197 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T++ ++ +E ++D + A +I+ K+ Sbjct: 198 SLDMVVAGTETAVLMV---ESEADELTEDQMLGAVLFAHQEFQAVIQAVKE 245 >gi|121604326|ref|YP_981655.1| polynucleotide phosphorylase/polyadenylase [Polaromonas naphthalenivorans CJ2] gi|187610307|sp|A1VM56|PNP_POLNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120593295|gb|ABM36734.1| 3' exoribonuclease [Polaromonas naphthalenivorans CJ2] Length = 703 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTK--HG 57 R+ GR +R I + V GS L G+T L TL E + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIAVLPSKEEFPYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T + I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGT-TFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGQ 545 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 77/234 (32%), Gaps = 31/234 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67 ++++ +++ A G+ L+ T +L T + + + T G +P Sbjct: 17 KVTMETGEMARQAGGAVLLDMDGTVVLATVVAKSDAKPGQDFFPLTVDYLEKTYAAGRIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ KRE GR R+I R +R + Q++I + + Sbjct: 77 ---GSFFKRE---GRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSLNPEVEGDI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ + AL G + A + G +++ + + Sbjct: 131 PALIASSAALSISGI-------------PFNGPIGAARVAYINGEYVLNPGKTQLQNSTM 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237 D T++ ++ +E S++ + + I + +L +D Sbjct: 178 DLVVAGTEAAVLMV---ESEAKQLSEEIMLGAIVFGHEQGNIAINAIHELVRDA 228 >gi|227824763|ref|ZP_03989595.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21] gi|226905262|gb|EEH91180.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21] Length = 703 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 84/235 (35%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRNTK---- 55 +R GR +++R IS + G L G T +L A + + Sbjct: 321 IRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREAQTLDGLGTELT 380 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P S G + R+ G + RAL V+ I + Sbjct: 381 KRYIH-HYNFPPYSVGETKPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRLV 435 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A+ + ++L D +K V+ ++ G++ Sbjct: 436 SEVLESNGSSSMASTCASTLSLMDAGV-------------PIKAPVSGVAMGLVKEGDDI 482 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T+ G I +Q + ++ F L A+ Sbjct: 483 TILTDIQGLEDANGDMDFKVAGTEKG-ITAIQMDIKIDGINRQIFEQALEQARKG 536 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 27/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +++ ++K A GS L+++G+T ++ T E V + G + Sbjct: 22 RPLTIETGKIAKQANGSVLIRYGETAVVVAVTGTDTPREGVDFFPLTVDFEEKMYAVGKI 81 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR + R+I R +R + QI+ + D Sbjct: 82 P---GGFLRRE---GRPPETAILTSRLIDRPIRPMFPDGYHNDVQIVATAVSVDPDNAPD 135 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL +G +A + G + G I++ + Sbjct: 136 IPAMIGASCALS-------------ISDIPFEGPIAGVRVGRVDGKFIINPTL--EQAAV 180 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + N + + + + + + Q A+L + I L+ Q+ Sbjct: 181 SEMNVAVAGTKEAILMVEAGAKEVSEQVMLDAIL-FGHEEIKKLVAFQEQ 229 >gi|52842967|ref|YP_096766.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81376653|sp|Q5ZRV8|PNP_LEGPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52630078|gb|AAU28819.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 729 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R IS+ + + GSCL G+T + ATL + I Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ RAL +V+ + + I + Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D ++ + + +G A+ + D+ Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + + + + L A + ++ + + Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNA 539 Query: 238 ISNE 241 ++ Sbjct: 540 LAEH 543 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRST 70 L V++ A+G+ + T +L T E + + G +P Sbjct: 17 LETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP--- 73 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR I R+I R +R + + QII + + A+ Sbjct: 74 GGFNKRE---GRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDIIAM 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL G + A G G +++ E +D Sbjct: 131 IGASAALS-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 T I+ V+ +E S+D + + K+ I + +L +DV Sbjct: 178 IAGTKDA-ILMVE--SEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDV 225 >gi|21674467|ref|NP_662532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium tepidum TLS] gi|81790880|sp|Q8KBY3|PNP_CHLTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21647655|gb|AAM72874.1| polyribonucleotide nucleotidyltransferase [Chlorobium tepidum TLS] Length = 733 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR Q+R IS+ + A GS L G+T L T TL K + + K Sbjct: 332 RLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDTLTDDKDK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G + RA++ V+ + + D Sbjct: 392 RFMLHYNFPPFSVGEIGRVGGAGRREIGHG----NLAERAIKMVMPSEQEFPYTVRLVSD 447 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +A D ++ + + + +G A+ + D+ Sbjct: 448 ILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGIAMGLIKEGDRYAV---------LSDI 498 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + L A+ ++ + + Sbjct: 499 LGNEDHLGDMDFKVAGTRDG-ITACQMDIKIDGLDYHILETALEQARKGRLHILDVMAEA 557 Query: 238 I 238 I Sbjct: 558 I 558 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 84/232 (36%), Gaps = 23/232 (9%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGWITAEYGMLPRST 70 I++ K A+GS +V DT +L T + P +Y + Sbjct: 15 ITIETGKMAKQADGSAVVTMNDTMVLATVVSSKTPPSPNQDFFPLQVEYREKYSAAGKFP 74 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I RALR + QIII VI +D A + Sbjct: 75 GGFFKRE---GRPSEKEILSARLIDRALRPLFPDGYYQETQIIIS--VISSD-TINDADV 128 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 G A + ++ + G + G IV+ D E + D+D Sbjct: 129 LGGIAA----------SAAIMVSDIPFANPMSEVRVGRINGLFIVNPDINELAQSDMDIC 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T+ I ++G E S+ + D I + LQ++ ++ EV Sbjct: 179 IGGTED-TICMLEG--EMKEISEAEMLDAIKFGHDAIKKICALQRE-LAAEV 226 >gi|315282187|ref|ZP_07870650.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL S4-120] gi|313614173|gb|EFR87854.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL S4-120] Length = 723 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL +G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|32266093|ref|NP_860125.1| polynucleotide phosphorylase/polyadenylase [Helicobacter hepaticus ATCC 51449] gi|81666186|sp|Q7VIL0|PNP_HELHP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|32262142|gb|AAP77191.1| polyribonucleotide nucleotidyltransferase [Helicobacter hepaticus ATCC 51449] Length = 709 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54 +R GR +R IS+ + +A GS L G T L +AT+ +N Sbjct: 320 IRADGRGLKDVRPISIQTNILPFAHGSVLFTRGQTQALVSATIGGDNDAQNYEMLGSKNA 379 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G +V R+ G + RAL S V + I + Sbjct: 380 LKKRFLFHYNFPSFSVGEASMIGSVGRRELGHG----NLAKRALHSSVQEQ---DKTIRL 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A++ G +AL C +E + V + AI + Sbjct: 433 VSEILESNGSSSMASVCGGSLALCACGIKVESLIAGVAMGLVTQDEQCAI---------L 483 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D G I +Q + +Q+ L AK+ ++ + Sbjct: 484 TDISGLEDHDGDMDFKVAGGYKG-ISAMQMDIKLGGITQEILCQALFQAKEAREQILAIM 542 Query: 235 KDV 237 ++ Sbjct: 543 EEA 545 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 33/222 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA-------TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 V++ A G L + G + LL + +E +P+ ++ + Y +G Sbjct: 20 VAQAANGGILYQNGGSVLLASVCTQENEKYDDEFLPLSVQYIEK-----TYANNKFPSG- 73 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE G+ R+I R LR + I++ V+ DG Sbjct: 74 FIKRE---GKPSEFEILTSRLIDRTLRPLFPKGYTYITSIVV--MVLSYDG-------KS 121 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN-F 191 + L + V+ + G G+ I++ + + + N F Sbjct: 122 DLQLNALNAAACALYVSDLPLESLQDKAVSGVRIGRKDGHFIINPTM--EQLSESELNLF 179 Query: 192 VMTDSGHIVEVQG----SAERA-TFSQDHFFAMLNLAKDRIA 228 V ++ ++ +A+ A S+++F L AK+ I Sbjct: 180 VSGRDDELLMIEMKSIRTAQGANELSEENFLEALECAKNYIK 221 >gi|16803371|ref|NP_464856.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes EGD-e] gi|47095916|ref|ZP_00233519.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 1/2a F6854] gi|224501726|ref|ZP_03670033.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes FSL R2-561] gi|254827592|ref|ZP_05232279.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N3-165] gi|254898504|ref|ZP_05258428.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes J0161] gi|254912005|ref|ZP_05262017.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes J2818] gi|254936332|ref|ZP_05268029.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes F6900] gi|284801716|ref|YP_003413581.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5578] gi|284994858|ref|YP_003416626.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5923] gi|81509180|sp|Q8Y7F1|PNP_LISMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|16410747|emb|CAC99409.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes EGD-e] gi|47015662|gb|EAL06592.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 1/2a F6854] gi|258599969|gb|EEW13294.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N3-165] gi|258608922|gb|EEW21530.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes F6900] gi|284057278|gb|ADB68219.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5578] gi|284060325|gb|ADB71264.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 08-5923] gi|293589970|gb|EFF98304.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes J2818] Length = 723 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL +G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|307293331|ref|ZP_07573177.1| polyribonucleotide nucleotidyltransferase [Sphingobium chlorophenolicum L-1] gi|306881397|gb|EFN12613.1| polyribonucleotide nucleotidyltransferase [Sphingobium chlorophenolicum L-1] Length = 781 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR Q+R I GS L G+T + T TL K + + +G Sbjct: 316 RIDGRTTTQIRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTKDAEQMIDGLNGVYYE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G ++ RAL V+ I + D Sbjct: 376 NFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHPVLPSKDEFPYTIRVLSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKNFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A +Q+ F L AK+ A ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKA 541 Query: 238 ISN 240 +S+ Sbjct: 542 LSS 544 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 27/225 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++L +++ A+ + L +G+T +L T + V +T Y S Sbjct: 16 LTLETGRIARQADAAVLATYGETVVLCAVTAAKSV---KEGQDFFPLTVHYQ-EKYSAAG 71 Query: 73 RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128 R+ +G +E + R+I R +R + I + V+ DG Sbjct: 72 RIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNE--INVIAQVLSFDGESEPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ A AL G + A G G ++ E T ++D Sbjct: 130 AMIAASAAL-------------TLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 T S ++ V+ +E S+D + A + ++ Sbjct: 177 LVVAATGSA-VMMVE--SEAKELSEDVMLGAVLFAHEASKKIVNA 218 >gi|193212209|ref|YP_001998162.1| polynucleotide phosphorylase/polyadenylase [Chlorobaculum parvum NCIB 8327] gi|226702632|sp|B3QM09|PNP_CHLP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193085686|gb|ACF10962.1| Polyribonucleotide nucleotidyltransferase [Chlorobaculum parvum NCIB 8327] Length = 732 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR Q+R IS+ + A GS L G+T L T TL K + + K Sbjct: 331 RLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDTLTDDKDK 390 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G + RA++ V+ + + D Sbjct: 391 RFMLHYNFPPFSVGETGRVGGTGRREIGHG----NLAERAIKMVMPAEQEFPYTVRLVSD 446 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +A D ++ + + + +G A+ + D+ Sbjct: 447 ILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGIAMGLIKEGDRYAV---------LSDI 497 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + L A+ ++ + + Sbjct: 498 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILETALEQARKGRLHILDVMTEA 556 Query: 238 I 238 I Sbjct: 557 I 557 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 83/232 (35%), Gaps = 23/232 (9%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGWITAEYGMLPRST 70 I++ K A+GS +V+ DT +L T + P +Y + Sbjct: 15 ITIETGKMAKQADGSAVVRLNDTMVLATVVSSKTPPPPSQDFFPLQVEYREKYSAAGKFP 74 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I RALR + QIII VI +D A + Sbjct: 75 GGFFKRE---GRPSEKEILSARLIDRALRPLFPDGYYQETQIIIS--VISSD-TINDADV 128 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 G A + ++ + G + G IV+ D E D+D Sbjct: 129 LGGIAA----------SAAIMVSDIPFANPMSEVRVGRINGQFIVNPDTEELQRSDLDIC 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T+ I ++G E S+ + + I L QK+ ++ EV Sbjct: 179 IGGTED-TICMLEG--EMKEISEAEMLDAIKFGHEAIKKLCAFQKE-LAAEV 226 >gi|187611322|sp|A4XYD6|PNP_PSEMY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 702 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 92/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R + + V GS L G+T L ATL + +T G Sbjct: 317 RIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R + +++ I + + Sbjct: 377 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRGVAAMLPKDDEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + VL+G A+ + D+ Sbjct: 433 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L A + +++ V Sbjct: 484 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQV 542 Query: 238 ISN 240 IS Sbjct: 543 ISQ 545 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 76/231 (32%), Gaps = 31/231 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 ++L +++ A G+ LV + T +L T + + + + T G + Sbjct: 15 VTLETGRIARQASGAVLVTVDNDVT-VLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + + Q++ Sbjct: 74 P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 A++ G AL G + A +++ +Y + Sbjct: 128 IASMIGTSAALAVSGI-------------PFNGPIGAARVAFHPDTGYLLNPNYEQLKAS 174 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T++ ++ +E ++D + A +I+ K+ Sbjct: 175 SLDMVVAGTETAVLMV---ESEADELTEDQMLGAVLFAHQEFQAVIQAVKE 222 >gi|328468614|gb|EGF39614.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 1816] Length = 728 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL +G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|323341663|ref|ZP_08081896.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464088|gb|EFY09281.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 712 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 90/245 (36%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R GR +++R +++ + GS L G+T +L+ TL + + Sbjct: 318 IRPDGRGVDEVRPLNVQIDLLSRVHGSGLFTRGETQVLSVCTLGAMADTQIIDDLSDVDS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + RAL V+ I + Sbjct: 378 KRFLHHYNFPPYSVGETGR----MGAPGRREIGHGALGERALSYVIPSEEEFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A+I +AL ++ + + V G I + D Sbjct: 434 EVLESNGSSSQASICAGSLALMAAGVPVKAAVSGIAMGLVQYGDDYTI---------LTD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + S+D L AK A+++ + Sbjct: 485 IQGMEDHFGDMDFKVAGTKKG-ITALQMDIKIKGLSEDILREALAQAKTGRAEMMAAMDE 543 Query: 237 VISNE 241 VIS Sbjct: 544 VISEP 548 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 29/235 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 + + ++K A GS LV++ DT +L+ AT ++ +T Y S G Sbjct: 14 NLKVETGELAKQAGGSVLVRYEDTVVLSAAT----ASKKAKDIDFFPLTVTYEEKLYSVG 69 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 ++RE GR + R+I R +R + Q++ + D Sbjct: 70 KIPGGFLRRE---GRPSEHATLTSRLIDRTIRPLFAEGFRNEVQVVNTVLSVDQDSAPDM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ GA ++L +G +A ++ G + +++ E + Sbjct: 127 AAMFGASLSL-------------MVSDIPFEGPIAGVTVGYIDETFVINPTLEEQEKSKM 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T I V+ AE S++ + + I L Q + I+ EV Sbjct: 174 HLIVAGTKDA-INMVEAGAEE--VSEELMLEAMLFGHEWIKRLCAFQIE-IAQEV 224 >gi|297566425|ref|YP_003685397.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM 9946] gi|296850874|gb|ADH63889.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM 9946] Length = 718 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R GR Q+R I + V A GS + G+T +L TL + + Sbjct: 329 RADGRTNTQVRPIWIEADVLPRAHGSAVFARGETQVLGVVTLGTGRDAQLVDDLGLDTED 388 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + VS R+ G + RALR+V+ I + D Sbjct: 389 PFLVHYNFPPYSTGEVKRLRGVSRREVGHG----NLAKRALRAVLPSQEEFPYTIRVVGD 444 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V++++G + A +AL D +K VA ++ G++ Sbjct: 445 VLESNGSSSMATTCAGCLALMDAGV-------------PIKKPVAGVAMGLVSEGDRHVV 491 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED+ D+D T G + +Q + + S + L A++ ++ Sbjct: 492 LTDILGLEDALGDMDFKVTGTKDG-VTALQMDIKISGLSSETLRQALMQAREARLFILDK 550 Query: 234 QKDVISNE 241 +V+ Sbjct: 551 MTEVLPEP 558 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 84/231 (36%), Gaps = 30/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R +S+ +K GS V++GDT ++ TA +K +T E+ + Sbjct: 21 RTLSIETGKYAKQVSGSVWVRYGDTVVMATAQASDK----PIEADFLPLTVEFEERHYAV 76 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + ++RE GR G ++ R+ R +R + Q+I+ + Sbjct: 77 GKIPGSFMRRE---GRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQENTPD 133 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A AL G +A++ G+ G +++ E+S +D Sbjct: 134 ILGPIAASAAL-------------TLSDIPWNGPIASVRVGLQDGRLVLNPVAAEESDLD 180 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 V I+ V+ A ++ L A + +I+LQ+ + Sbjct: 181 ---LVVAGSKDAIIMVEAGAREIP--EEQLVQALEFAHRAMQPIIELQEQM 226 >gi|254829912|ref|ZP_05234567.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes 10403S] Length = 723 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL +G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|323464611|gb|ADX76764.1| polyribonucleotide nucleotidyltransferase [Staphylococcus pseudintermedius ED99] Length = 697 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R +S + A GS L G T L+ TL E ++ + +H Sbjct: 318 IRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQIIDGLGEEEH 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ + I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDEKTFPYTVRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREESYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + +++ L A+ +++ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTTEG-ITAIQMDIKIDGLTKEVIEEALEQARKGRLAILE 539 Query: 233 LQKDVISNE 241 I Sbjct: 540 HMMQTIDQP 548 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 93/234 (39%), Gaps = 32/234 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68 +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 16 PLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TR 126 G KRE GR G + R+I R +R + QII V+ AD Sbjct: 75 --GGFKKRE---GRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINT--VLSADPNCSPE 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +AL +G +A ++ G + G +++ + + Sbjct: 128 MAAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSR 174 Query: 187 VDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +D D+ ++VE A + ++ + + I L Q+++I+ Sbjct: 175 LDLEVAGHKDAVNMVE----AGASEITEAEMLEAILFGHEEIKRLCAFQEEIIA 224 >gi|320160467|ref|YP_004173691.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila UNI-1] gi|319994320|dbj|BAJ63091.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila UNI-1] Length = 760 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 93/248 (37%), Gaps = 30/248 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R R ++R I +S A GS L G+T +LT ATL P + Sbjct: 315 IRPDHRTPTEIRPIWCEVGISPRAHGSGLFTRGETQVLTLATL--GTPREAQELDSLVPI 372 Query: 59 ----ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y P STG S R+ G + RAL V+ + + Sbjct: 373 ETKRYMHHYNFPPYSTGEVKPLRGQSRREIGHG----ALAERALEPVIPPEDEFPYTLRL 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----C 170 +V+ ++G T A++ G+ +AL D +K VA ++ G++ Sbjct: 429 VSEVLSSNGSTSMASVCGSTLALMDTGV-------------PIKAPVAGVAMGLIKEGDN 475 Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G I +Q + + + L A++ D+ Sbjct: 476 AVILTDIQGLEDHLGDMDFKVAGTEKG-ITALQMDIKIKGITPELMSRALAQAREARLDI 534 Query: 231 IKLQKDVI 238 +K VI Sbjct: 535 LKKMLAVI 542 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 75/227 (33%), Gaps = 27/227 (11%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 + A G+ V+ GD+ + AT E + + + ++ G +P Sbjct: 16 PVVFETGKLAGQAGGAVTVRLGDSMVFAAATMSPEPREGIDFFPLSVEYEERLYAGGRIP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ +RE G+ + R+ R LR + + Q+I+ + Sbjct: 76 ---GSYFRRE---GKPSTEAILTARLTDRPLRPLFNKEMRNEVQVILFSLSADQENPLDI 129 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I A AL G V A+ G + G I++ + + D+ Sbjct: 130 LCINAASAAL-------------MISDIPWGGPVGAVRIGRIDGQFIINPTFSQMEISDL 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D T I+ V+ A+ +D L + + LI Q Sbjct: 177 DLRIAGTRDA-ILMVECGAKEVA--EDVMVQALQFGHEALQPLIDAQ 220 >gi|326335448|ref|ZP_08201635.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692214|gb|EGD34166.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 725 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 80/230 (34%), Gaps = 20/230 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR Q+R I GS + G+T L T TL E V Sbjct: 317 IRLDGRNTKQIRPIWCEVGYLPSPHGSSIFTRGETQALATVTLGTSREANVIDIPSEQSE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ ++ + + Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKRMIPED--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + +AL D M+ + + + G A+ + D Sbjct: 431 EILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDKYAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED D+D T G I Q + + + L A++ Sbjct: 482 ILGDEDHLGDMDFKVTGTKDG-ITACQMDIKIKGLTYEILEKALEQAREG 530 Score = 92.1 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 27/228 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R IS+ K A+G+ +V+ G+ LL T E V + A G Sbjct: 16 RTISIETGKLAKQADGAVVVRMGNAMLLATVVANKEPGEGVDFLPLTVDYREKFAAAGRF 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE+ R + R++ R LR + Q++I ++ D Sbjct: 76 P---GGFFKRES---RPSDQEILTMRLVDRVLRPLFPEEYYCEVQVMI--QLMSHDENV- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G ++ + G + G +++ + E Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRINGQFVINPNAKE--LTQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + ++ S V + E S+ + A + I I+ Q Sbjct: 175 SDMDIMVGASKEFVAMV-EGEMDEVSEKDMADAIRFAHEAIKTQIEAQ 221 >gi|46907557|ref|YP_013946.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes serotype 4b str. F2365] gi|47094124|ref|ZP_00231847.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 4b H7858] gi|226223932|ref|YP_002758039.1| polynucleotide phosphorylase [Listeria monocytogenes Clip81459] gi|81403374|sp|Q71ZZ1|PNP_LISMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|259534135|sp|C1L2N7|PNP_LISMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|46880825|gb|AAT04123.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|47017509|gb|EAL08319.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. 4b H7858] gi|225876394|emb|CAS05103.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 723 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL +G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|255322462|ref|ZP_05363607.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae RM3277] gi|255300370|gb|EET79642.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae RM3277] Length = 731 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58 +R GR+ ++R IS+ + A GSCL G T L ATL + M+ T+ G Sbjct: 341 VRADGRELKEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGA 400 Query: 59 IT----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 +T Y S G +A R+ G + RAL +D+++ I + Sbjct: 401 VTDKFMFNYNFPGFSVGEASPLKAPGRRELGHG----NLAKRALAPSIDVNS--PYTIRL 454 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A++ G +AL + + +G A+ + Sbjct: 455 VSEILESNGSSSMASVCGGSLALRAAGVDTPKLVAGVAMGLIFEGDKHAV---------L 505 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D + G I +Q + S D L A++ ++ L Sbjct: 506 TDIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGISLDVLKEALLQAREGRLHILNLM 564 Query: 235 KDV 237 + Sbjct: 565 EKA 567 Score = 69.4 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 79/252 (31%), Gaps = 49/252 (19%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 V+K A G+ L++ +T +L T E+ ++ T G +P G VKR Sbjct: 19 VAKQASGAVLLRVKNTVVLATVAREDTQVSEDFLPLTVQYIEKTYAAGRIP---GGYVKR 75 Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136 E + G R+I R+LR + QI++ + + A+ A VA Sbjct: 76 ET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDLQVVALNAASVA 132 Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE--------------D 182 L+ + V + G + +++ E D Sbjct: 133 LY-------------LSDIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKD 179 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERAT-------------FSQDHFFAMLNLAKDRIAD 229 + ++ + T+ IV + FS+D + A I Sbjct: 180 ELLMIEMRSIPTEKDEIVPIALDPMMDPNLSGVIAMQDMNEFSEDLIVEAIAEAGKAILR 239 Query: 230 LIKLQKDVISNE 241 ++ S Sbjct: 240 ASNAYEEAFSKH 251 >gi|332976716|gb|EGK13552.1| polyribonucleotide nucleotidyltransferase [Psychrobacter sp. 1501(2011)] Length = 702 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 93/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR + +R + + V Y GS L G+T L T TL + + ++ G I Sbjct: 320 RIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNLIDSLAGTIQD 379 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++++ S I + + Sbjct: 380 HFMLHYNFPHFSVGETGREGVPKRREIGHG----RLARRGVQAMLPDSDRFPYVIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G A+ + D+ Sbjct: 436 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDRFAV---------LSDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + + D L A ++ +V Sbjct: 487 LGDEDHLGDMDFKVAGTKDG-ITALQMDIKIEGITADIMEKALEKAHAGRIHILNAMNEV 545 Query: 238 ISN 240 + + Sbjct: 546 LPS 548 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 76/235 (32%), Gaps = 34/235 (14%) Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++ + S LV G +L ++ E + + G +P Sbjct: 17 QVIIETGRIARQANSVLVHMGGVSVLVAVVVKSEAKEGQNFFPLTVNYQEKMYAAGKIPG 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT- 127 + G R GR R+I R +R + + QI V+ +D Sbjct: 77 AYGKR------EGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITAT--VVSSDKKHYAD 128 Query: 128 -AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G V G + G +++ E D Sbjct: 129 IAAMIGASAALA-------------ISDAPFNGPVGGARVGFINGEYVLNPSIEELKNSD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 +D T S ++ +E A S+D + ++ I ++++L K V Sbjct: 176 LDLVVAGTKSAVLMV---ESEAAELSEDQMLGAVLYGHEQQQIVIDNIVELAKAV 227 >gi|225719528|gb|ACO15610.1| Exosome complex exonuclease MTR3 [Caligus clemensi] Length = 274 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 32/244 (13%) Query: 2 RLSG-RQENQ-MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58 R G R ++ +R + V +GS ++ G T ++ + +V + ++ G Sbjct: 40 RPDGERDKDSSVRPLFCEVGVLTQCKGSAYIERGRTKVIASVFGPREVNKKLDFSSTTGI 99 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 ++ EY P S+ + + + I + + RS V L +I I V Sbjct: 100 LSVEYCETPFSSSSSNRSSKSPSNEDKN---ISLFLAQTFRSTVCLHLYPKSRIDIFITV 156 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 ++ DG AIT +AL D ++ D V S M G ++D Sbjct: 157 LENDGSAIPTAITAGALALSDASINLFDL-------------VIGASVKMSLGKALIDPC 203 Query: 179 YGEDSTIDV------DANFVMTDSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRI 227 E+ D+ N ++ + ++ G E++ S ++ +A Sbjct: 204 KAEEEVGDMEDAEDNRGNIIIGYQPSLEQIAALLQDGVLEQSVLS-AQIRDLIKVA-KGN 261 Query: 228 ADLI 231 L Sbjct: 262 PSLY 265 >gi|217964522|ref|YP_002350200.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Listeria monocytogenes HCC23] gi|254824610|ref|ZP_05229611.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J1-194] gi|254852619|ref|ZP_05241967.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL R2-503] gi|254932354|ref|ZP_05265713.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes HPB2262] gi|255520235|ref|ZP_05387472.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes FSL J1-175] gi|300765429|ref|ZP_07075411.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N1-017] gi|254782725|sp|B8DFZ6|PNP_LISMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217333792|gb|ACK39586.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Listeria monocytogenes HCC23] gi|258605934|gb|EEW18542.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL R2-503] gi|293583910|gb|EFF95942.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes HPB2262] gi|293593848|gb|EFG01609.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J1-194] gi|300513866|gb|EFK40931.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL N1-017] gi|307570912|emb|CAR84091.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes L99] gi|332311774|gb|EGJ24869.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes str. Scott A] Length = 723 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL +G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase/polyadenylase [Herminiimonas arsenicoxydans] gi|187610275|sp|A4G647|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Herminiimonas arsenicoxydans] Length = 710 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 19/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ V GS L G+T L ATL + G Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL + + S + + + Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALIAALPAPEDFSYSVRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + + G A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKFAV---------LSDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-IADLIKLQKD 236 ED D+D T +G I +Q + +++ L AK+ I L +++K Sbjct: 487 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALAQAKEGRIHILGEMEKA 545 Query: 237 V 237 V Sbjct: 546 V 546 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 36/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ LV DT +L T + + T G +P Sbjct: 16 VTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLTVDYVEKTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + L QIII + + A Sbjct: 75 --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSVNPEIDPDIA 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G I++ + T +D Sbjct: 130 AMIGASAALSVSGI-------------PFAGPLGAARVGYIDGQYILNPTATQLKTSQMD 176 Query: 189 ANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232 T++ ++ E Q +E F D A+++ I DL++ Sbjct: 177 LVVAGTEAAVLMVESEAQQLSEEVMLGAVVFGHDQMKAVID----AIHDLVR 224 >gi|290893558|ref|ZP_06556541.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J2-071] gi|290556903|gb|EFD90434.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes FSL J2-071] Length = 723 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL +G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax benzoatilyticus JA2] gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax benzoatilyticus JA2] Length = 769 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L ATL + + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTERDAQRIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVAVLPNKDEFPYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G ++L D LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSLLDAGV-------------PLKAHVAGIAMGLIKEGNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTASG-ITALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538 Query: 234 QKDVISN 240 + + Sbjct: 539 MVEAVGG 545 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 28/197 (14%) Query: 46 KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105 + + T G +P G+ KRE GR R+I R +R + Sbjct: 55 GQDFFPLTVDYIEKTYAAGKIP---GSFFKRE---GRPSELETLTSRLIDRPIRPLFPEG 108 Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165 Q++I + A A +A L G + A Sbjct: 109 FYNEVQVVIHVLSL----NPEVQADIPAMIATSAALS---------ISGIPFNGPIGAAR 155 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAML---- 220 G + G +++ + + +D T++ + VE + + S++ + Sbjct: 156 VGYVNGEYVLNPSAAQLADSQMDLVVAGTEAAVLMVESEATG----LSEEVMLGAVVFGH 211 Query: 221 NLAKDRIADLIKLQKDV 237 + K IA + +L ++ Sbjct: 212 DQGKIAIAAINELVREA 228 >gi|269120588|ref|YP_003308765.1| polyribonucleotide nucleotidyltransferase [Sebaldella termitidis ATCC 33386] gi|268614466|gb|ACZ08834.1| Polyribonucleotide nucleotidyltransferase [Sebaldella termitidis ATCC 33386] Length = 710 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 87/248 (35%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ ++R I + GS L G+T L T TL +V + Sbjct: 320 RPDGRKTEEIRPIDVEIDTLPIPHGSALFTRGETQALVTVTLGSRVNEQIVDGMEEESRK 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G A R+ G + RAL+ ++ I + + Sbjct: 380 KFYLHYNFPPYSVGEAGFMRAPGRRELGHGS----LAERALKYMIPEQEDFPYTIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL M K VA I+ G++ Sbjct: 436 ITESNGSSSQASICGGSLALMAAGVPM-------------KSSVAGIAMGLIKENEEFVV 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L A + ++ Sbjct: 483 LTDIQGLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITREIMEIALKQAHNGRMFILDK 541 Query: 234 QKDVISNE 241 VI Sbjct: 542 MNAVIPEP 549 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 + ++ +++ A G+ +V+ G T LL TAT + E + + G P Sbjct: 16 VKISSGKIARQASGAVIVECGKTVLLVTATRSKEVREGTDFFPLTVDYIEKFYASGKFP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE+ R I R+I R +R + I+I Sbjct: 75 --GGFIKRES---RPSTDEVLIARLIDRPIRPLFPEGFFYGVHIVITV------------ 117 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 I+ V L + L + + G V ++ G + G +++ E D++ Sbjct: 118 -ISFDEVNLPENLATLGVSAALSISDIPFAGPVGGVNVGYIDGKFVLNPTPEELEISDIE 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T + V+ A +D + +I ++ + Q+ IS Sbjct: 177 LSVAGTADA-VTMVEAGANEIP--EDIMLEAIMFGHGKIKEMCEEQEKFISQ 225 >gi|62859375|ref|NP_001017033.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana) tropicalis] gi|89267966|emb|CAJ81388.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana) tropicalis] Length = 789 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 18/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R I+ + K GS L + G T +L T T + + + + Sbjct: 364 RCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIESSMKSDHITTALSG 423 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + +ALR V+ I Sbjct: 424 VKDKNFMLHYEFPPYATNEIGKVTGINRRELGHG----ALAEKALRPVIPKDF--PFTIR 477 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + + K G + Y Sbjct: 478 VTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSPDK--NGEIQDYR 535 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T G I +Q + + A ++I+ Sbjct: 536 LLTDILGIEDYNGDMDFKMAGTSKG-ITALQADIKIPGLPLKIVMEAIQQATVAKKEIIQ 594 Query: 233 LQKDVISNE 241 + VIS Sbjct: 595 IMNKVISKP 603 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 82/220 (37%), Gaps = 29/220 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+G +VK GD+ ++ TA T + +A G +P Sbjct: 60 RKLEISSGKLARFADGCAVVKLGDSSVMVTAVSRTKPSPSQFMPLVVDYREKSAAAGRIP 119 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE R+I R++R + QI+ C+++ DG Sbjct: 120 ---TNHLRREVG---ITPDEILTSRIIDRSVRPLFPAGYFYETQIL--CNLLAVDGVNKP 171 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA AL G V A+ G++ G I++ E S+ Sbjct: 172 DVLAINGASAALA-------------LSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSS 218 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ++ IV ++ +AE Q F + L Sbjct: 219 LLNLVIAGGVQSQIVMMEAAAENVL--QQDFCHAVKLGVK 256 >gi|54298752|ref|YP_125121.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila str. Paris] gi|81369705|sp|Q5X1C7|PNP_LEGPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|53752537|emb|CAH13969.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str. Paris] Length = 729 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R IS+ + + GSCL G+T + ATL + I Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGETRD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ RAL +V+ + + I + Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDTNEFPYVLRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D ++ + + +G A+ + D+ Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + + + + L A + ++ + + Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNA 539 Query: 238 ISNE 241 ++ Sbjct: 540 LAEH 543 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 80/238 (33%), Gaps = 45/238 (18%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW----ITAEY------- 63 L V++ A+G+ + T +L T W +++ +T Y Sbjct: 17 LETGEVARQADGAVMASMNGTQVLVTVV-------WKKDSGESNDFFPLTVNYQEKFYAI 69 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G KRE GR I R+I R +R + + QII + + Sbjct: 70 GKIP---GGFNKRE---GRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEV 123 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+ GA AL G + A G G +++ E Sbjct: 124 SPDIIAMIGASAALS-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKEQE 170 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 +D T I+ V+ +E S+D + + K I + +L ++V Sbjct: 171 ESKLDLVIAGTKDA-ILMVE--SEAQELSEDIMRGAMLYGHEMMKSVIKSIEELAREV 225 >gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Thiomonas sp. 3As] Length = 719 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +S+ V GS L G+T L ATL I + G Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL +V+ + + + + Sbjct: 375 RFLLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALLAVLPKKEDFAYTMRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V +++G + A++ G +AL D LK HVA I+ G++ Sbjct: 431 VTESNGSSSMASVCGGCLALLDAGV-------------PLKAHVAGIAMGLIKEGNRFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + SG + +Q + +++ L A++ ++ + Sbjct: 478 LTDILGDEDHLGDMDFKVAGSASG-VTALQMDIKIQGITREIMQVALAQAREARMHILGV 536 Query: 234 QKDVISN 240 + + Sbjct: 537 MQQAVGG 543 Score = 68.6 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLP 67 ++++ +++ A G+ L+ DT +L T + + T G +P Sbjct: 15 QVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLTVDYIEKTYAAGRIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R +R + Q+++ V+ Sbjct: 75 ---GGFFKRE---GRPSENETLTSRLIDRPIRPLFPEGFFNEVQVVV--HVL-------- 118 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I A D + + G V A G + G +++ E + + Sbjct: 119 -SINPEVEA--DIPALLASSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRL 175 Query: 188 DANFVMTDSGHI-VEVQGSA-------ERATFSQDHFFAMLNLAKDRIADLIK 232 + T+S + VE + E F F +N I +L++ Sbjct: 176 ELVVAGTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAIN----AIHELVR 224 >gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia K12] gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia K12] Length = 719 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R +S+ V GS L G+T L ATL I + G Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL +V+ + + + + Sbjct: 375 RFLLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALLAVLPKKEDFAYTMRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V +++G + A++ G +AL D LK HVA I+ G++ Sbjct: 431 VTESNGSSSMASVCGGCLALLDAGV-------------PLKAHVAGIAMGLIKEGNRFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + SG + +Q + +++ L A++ ++ + Sbjct: 478 LTDILGDEDHLGDMDFKVAGSASG-VTALQMDIKIQGITREIMQVALAQAREARMHILGV 536 Query: 234 QKDVISN 240 + + Sbjct: 537 MQQAVGG 543 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLP 67 ++++ +++ A G+ L+ DT +L T + + T G +P Sbjct: 15 QVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLTVDYIEKTYAAGRIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR I R+I R +R + Q+++ V+ Sbjct: 75 ---GGFFKRE---GRPSENETLISRLIDRPIRPLFPEGFFNEVQVVV--HVL-------- 118 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I A D + + G V A G + G +++ E + + Sbjct: 119 -SINPEVEA--DIPALLATSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRL 175 Query: 188 DANFVMTDSGHI-VEVQGSA-------ERATFSQDHFFAMLNLAKDRIADLIK 232 + T+S + VE + E F F +N I +L++ Sbjct: 176 ELVVAGTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAIN----AIHELVR 224 >gi|168061313|ref|XP_001782634.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665867|gb|EDQ52537.1| predicted protein [Physcomitrella patens subsp. patens] Length = 817 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 82/245 (33%), Gaps = 11/245 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56 MR+ GR NQ+RE+ GS + G+T +L T T+ + + Sbjct: 396 MRVDGRGLNQVRELQCEAGTYPALHGSSVFSRGNTQVLCTVTIGAPDDAQRLDSLVGIDR 455 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S + ++ R+ G + +AL +++ + + Sbjct: 456 KRFMVHYSFPPFSINEVGRTGGLNRREVGHGT----LAEKALVALLPPEEDFPYSVRVTS 511 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 + + +DG + A + G +AL D + + V + D Sbjct: 512 ECLASDGSSSMATVCGGSLALMDAGIPLRSHVGAVSVGLVSVSDPETGRVTEY--RILTD 569 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + A L A ++ + Sbjct: 570 ILGLEDHLGDMDFKIAGTKKG-ITAIQLDIKPAGIPLHILCEALEPALVGRTQILDFMEQ 628 Query: 237 VISNE 241 VIS+ Sbjct: 629 VISSP 633 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 26/186 (13%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++S ++A G+ +V G+T +L T + K + + EY + G Sbjct: 95 KMSFETGKLARFASGAVVVGVGETKVLVTVVADYK---FDGGKDFLPLQVEYREKQYAQG 151 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 ++RE G R R+I R++R + QII + D Sbjct: 152 KIPATFMRRE---GAPKERELLCGRLIDRSVRPLFPKGFFYDSQIIANVLCSDGDQDPDV 208 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ A AL KG + + G + G IV+ + E Sbjct: 209 LAVNAASAALV-------------ISDIPWKGPIGCVRIGRVKGKFIVNPNMDE--FSLS 253 Query: 188 DANFVM 193 D N V Sbjct: 254 DLNLVY 259 >gi|116063353|gb|AAI23081.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana) tropicalis] Length = 789 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 18/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R I+ + K GS L + G T +L T T + + + + Sbjct: 364 RCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIESSMKSDHITTALSG 423 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + +ALR V+ I Sbjct: 424 VKDKNFMLHYEFPPYATNEIGKVTGINRRELGHG----ALAEKALRPVIPKDF--PFTIR 477 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + + K G + Y Sbjct: 478 VTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSPDK--NGEIQDYR 535 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T G I +Q + + A ++I+ Sbjct: 536 LLTDILGIEDYNGDMDFKMAGTSKG-ITALQADIKIPGLPLKIVMEAIQQATVAKKEIIQ 594 Query: 233 LQKDVISNE 241 + VIS Sbjct: 595 IMNKVISKP 603 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 82/220 (37%), Gaps = 29/220 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+G ++K GD+ ++ TA T + +A G +P Sbjct: 60 RKLEISSGKLARFADGCAVLKLGDSSVMVTAVSRTKPSPSQFMPLVVDYREKSAAAGRIP 119 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE R+I R++R + QI+ C+++ DG Sbjct: 120 ---TNHLRREVG---ITPDEILTSRIIDRSVRPLFPAGYFYETQIL--CNLLAVDGVNKP 171 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA AL G V A+ G++ G I++ E S+ Sbjct: 172 DVLAINGASAALA-------------LSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSS 218 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ++ IV ++ +AE Q F + L Sbjct: 219 LLNLVIAGGVQSQIVMMEAAAENVL--QQDFCHAVKLGVK 256 >gi|312885678|ref|ZP_07745313.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis DSM 18603] gi|311301885|gb|EFQ78919.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis DSM 18603] Length = 715 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR Q+R I A GS + G+T LTT TL K + + + Sbjct: 320 RLDGRTTTQIRPIWSEVGYLPAAHGSAVFTRGETQALTTVTLGAKDDEQMIDGAFINGYQ 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y STG R+ G + R+L+ V+ I I D Sbjct: 380 KFLLHYNFPGFSTGEVRPNRGAGRREIGHG----NLAMRSLKQVLPDENENPYTIRIVSD 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 436 ILESNGSSSMATVCAGTLALMDAGIK-------------IKAPVSGIAMGLITNPEGTKY 482 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T+ G IV Q + S + L+ AK+ ++ Sbjct: 483 AILSDILGDEDHLGDMDFKVTGTEKG-IVACQMDLKINGLSYEVLSKALDQAKEGRLHIL 541 Query: 232 KLQKDVI 238 K I Sbjct: 542 NEMKKTI 548 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 28/236 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA--TLE--EKVPMWIRNTKHGWITAEYGML 66 R I + K A+GS +VK GDT LL T T E E V + + A G + Sbjct: 16 RTIEIETGKLAKQADGSVVVKMGDTMLLATVVSTPEAKEGVDFLPLSVDYQEKYAATGRI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++REA R I R++ RALR + Q++I +I AD Sbjct: 76 P---GGFLRREA---RLSDYEVLISRLVDRALRPLFPDDYHADVQVMIS--LISADKNI- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + DCL + + G ++ + + G +++ + Sbjct: 127 ----------MPDCLAGLAASAAIAVSDIPFNGPISEVRVAKIDGKLVINPTVSDLERAS 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 ++ V + I V+G E + + + A D I ++ Q + ++ EV Sbjct: 177 LEF-IVAGSASDINMVEG--ECSEIQEAELVEAIKFAHDAIKIQVQAQVE-LAAEV 228 >gi|291296202|ref|YP_003507600.1| 3' exoribonuclease [Meiothermus ruber DSM 1279] gi|290471161|gb|ADD28580.1| 3' exoribonuclease [Meiothermus ruber DSM 1279] Length = 714 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R GR Q+R I + V GS + G+T +L TL + + Sbjct: 325 RADGRTPTQVRPIWIESNVLPKTHGSAIFSRGETQVLGVVTLGTGRDAQLVDDLGIETED 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + VS R+ G + R LR+V+ I + D Sbjct: 385 PFLVHYNFPPYSTGEVRRLRGVSRREVGHG----NLAKRGLRAVLPSREEFPYTIRVVGD 440 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V++++G + A + +AL D LK HVA ++ G++ Sbjct: 441 VLESNGSSSMATVCAGCLALLDAGV-------------PLKKHVAGVAMGLVKEGEQAVV 487 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED+ D+D T G + +Q + + + A L A++ ++ L Sbjct: 488 LTDILGLEDALGDMDFKVTGTRDG-VTALQMDIKIKGLTPEIMRAALYQAREARLHILSL 546 Query: 234 QKDVISNE 241 + + Sbjct: 547 MERAVPTH 554 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 30/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R +++ +K+ GS V +G+T ++ TA + +T E+ + Sbjct: 20 RTLTIETGKYAKHVSGSVWVTYGETVVMATAQASDA----PIQADFLPLTVEFEERHYAV 75 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + ++RE GR G ++ R+ R +R + Q+++ V+ AD Sbjct: 76 GRIPGSFMRRE---GRPGEKAILSARLTDRPIRPLFPKGFRHEVQVLLT--VLSAD---- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D L + + +G +A++ G+ G +++ EDS +D Sbjct: 127 -------QENTPDILGPIAASAALMLSDIPWEGPIASVRVGLQNGRLVLNPVAQEDSQLD 179 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 V I+ V+ A+ S+D L A + +++LQ+ + Sbjct: 180 ---LVVAGSKEAIIMVEAGAQE--VSEDRLVEALEFAHRAMQPILELQEQM 225 >gi|198434569|ref|XP_002126010.1| PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA transport regulator 3 homolog) (Exosome component 6) [Ciona intestinalis] Length = 276 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 55/147 (37%), Gaps = 6/147 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWIT 60 R GR Q R++ L V A+GS + T ++ + + + M G + Sbjct: 35 RADGRYVTQPRDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQINKGKLK 94 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 E P S+ G E ++ A+ S V L QI + V++ Sbjct: 95 CELKYAPYSSPKHGDHI-----PGASDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLE 149 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDC 147 DG AAIT A VAL D M D Sbjct: 150 DDGSVMPAAITAASVALVDAGIEMYDV 176 >gi|171058181|ref|YP_001790530.1| polynucleotide phosphorylase/polyadenylase [Leptothrix cholodnii SP-6] gi|226702660|sp|B1Y823|PNP_LEPCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|170775626|gb|ACB33765.1| Polyribonucleotide nucleotidyltransferase [Leptothrix cholodnii SP-6] Length = 767 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L ATL + Sbjct: 317 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTDQDSQRIDALAGDFRD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL ++ I + + Sbjct: 377 SFLFHYNMPPFATGEVGRMGTTKRRETGHG----RLAKRALVPLLPPKDEFGYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D M+ + + +G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLAMMDAGVPMKAHVAGIAMGLIKEGNRFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G + +Q + +++ L AK+ ++ + Sbjct: 484 LGDEDHLGDMDFKVAGTTAG-VTALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVEA 542 Query: 238 ISN 240 + Sbjct: 543 MGT 545 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 82/233 (35%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +S+ A G+ +V DT +L T + + + T G +P Sbjct: 18 VTLETGEISRQAGGAVIVNIDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R LR + +++ + + A Sbjct: 77 --GSFFKREA---KPSELEVLTSRLIDRPLRPLFPEGFYNEVHVVVHVLSLNPEASADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ AL G V A G + G +++ + + +D Sbjct: 132 ALIGSSAALAISGI-------------PFNGPVGAARVGYVNGEYVLNPGPTQLKSSKMD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 T++ ++ +E +++ + AK IA + +L +D Sbjct: 179 LVVAGTEAAVLMV---ESEADQLTEEVMLGAVVYGHEQAKVAIAAINELVRDA 228 >gi|302878493|ref|YP_003847057.1| polyribonucleotide nucleotidyltransferase [Gallionella capsiferriformans ES-2] gi|302581282|gb|ADL55293.1| polyribonucleotide nucleotidyltransferase [Gallionella capsiferriformans ES-2] Length = 701 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R+I++ V GS L G+T + ATL + G T Sbjct: 311 RIDGRDTRTVRQITIRNGVLARTHGSALFTRGETQAVVVATLGSMRDAQKVDALQGEFTD 370 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P +TG + + R+ G R+ RAL +V+ + I + Sbjct: 371 RFMLHYNFPPFATGETGRVGSPKRREIGHG----RLAKRALVAVLPSEEDFGYAVRIVSE 426 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +++ D LK HVA I+ G++ Sbjct: 427 ITESNGSSSMASVCGGCLSMLDAGV-------------PLKAHVAGIAMGLIKEGNRFAV 473 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D +++G I +Q + +++ A L+ AK+ ++ + Sbjct: 474 LSDILGDEDHLGDMDFKVAGSENG-ITALQMDIKINGITREIMQAALSQAKEGRLHILGI 532 Query: 234 QKDVISN 240 K+ +S Sbjct: 533 MKESMSG 539 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 31/197 (15%) Query: 45 EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104 + + + T G +P G+ KRE GR + R+I R LR + Sbjct: 51 PEQDFFPLTVDYQEKTYAAGKIP---GSFFKRE---GRASEKEILTSRLIDRPLRPLFPE 104 Query: 105 SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164 S QII ++ + ++ GA AL +G +AA Sbjct: 105 SFYNEVQIIATVMSSDSEIDSDIPSLIGASAALAISGI-------------PFEGPIAAA 151 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV---EVQGSAER-----ATFSQDHF 216 G G +++ E T +D TD ++ E Q +E F + F Sbjct: 152 RVGYANGQYLLNPTKTELVTSQMDLVVAGTDRAVLMVESEAQQLSEEVMLGAVMFGHEQF 211 Query: 217 FAMLNLAKDRIADLIKL 233 ++N I ++ + Sbjct: 212 QIVIN----AINEMAEA 224 >gi|222151113|ref|YP_002560267.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus JCSC5402] gi|254782726|sp|B9EBG0|PNP_MACCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222120236|dbj|BAH17571.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus JCSC5402] Length = 703 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 92/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G T L+ AT E ++ + + Sbjct: 314 VRPDGRRPDEIRPLDSEVGILPRVHGSGLFTRGQTQALSVATLGALGEHQIIDGLGVEEE 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL V+ I + Sbjct: 374 KRYMHHYNFPNFSVGETGPIRAPGRREIGHG----ALGERALLQVIPDEKEFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 430 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTKDENYT 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + ++D L A+ +++ Sbjct: 477 ILSDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKINGLTEDILREALEQARVGRLHIME 535 Query: 233 LQKDVISNE 241 IS Sbjct: 536 HMLSTISEP 544 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+TAT V + + G +P Sbjct: 15 RPLIIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDVDFFPLMVNYEEKLYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + Q+I + D Sbjct: 75 ---GGFNKRE---GRPGEDATLTSRLIDRPIRPLFPKGYRHDVQVISIVMSVDPDNSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G++ G I++ D + + Sbjct: 129 AAMIGSSMALA-------------VSDIPFEGPIAGVNVGLVDGELIINPDVQQREVSVL 175 Query: 188 DANFVMTDSGHIVEVQG-SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D +GH V A ++D + I L++ Q+ +I Sbjct: 176 DLQV----AGHFDAVNMVEAGAKEVAEDKMLEAIMFGHAEIKKLVEFQQSII 223 >gi|160902045|ref|YP_001567626.1| polynucleotide phosphorylase/polyadenylase [Petrotoga mobilis SJ95] gi|187610306|sp|A9BH73|PNP_PETMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160359689|gb|ABX31303.1| Polyribonucleotide nucleotidyltransferase [Petrotoga mobilis SJ95] Length = 695 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 100/248 (40%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 R+ GR +++R+I+ + GS L G+T L T TL + + + +T + Sbjct: 321 RVDGRTCDEIRDITCEVGLIPRVHGSALFTRGETQSLGTVTLGAPLDVQVLDTIFSDEEK 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + VS R+ G + RA ++++ I + D Sbjct: 381 RFMLHYNFPPFSTGEVKRLRGVSRREIGHGH----LAERAHKNLIPSDEEFPYTIRVVSD 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 +++++G + A++ A +AL D ++ HVA I+ G++ + + Sbjct: 437 ILESNGSSSMASVCSASLALMDAGV-------------PIQKHVAGIAMGLIFENDNFVV 483 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I Q + + +++ L AK ++ Sbjct: 484 LTDILGMEDHLGDMDFKVAGTRDG-ITAFQMDVKTSQVNKEVLQKALEKAKIARLKILDK 542 Query: 234 QKDVISNE 241 + I Sbjct: 543 MYETIPQP 550 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 27/218 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ + V+K + GS ++ F ++ +L TA E+ ++ +T E+ + Sbjct: 11 RKLRIEHGKVAKQSLGSVMLTFNESTILVTADASEET---VKGQDFFPLTVEFQEKFYAV 67 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE G+ + R+I R +R + + Q+I + Sbjct: 68 GKIPGGFIKRE---GKPSDEAILAARLIDRPIRPLFPENFFNEVQVITTVFSMLNGDSIE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 T ITGA +AL+ G VA + G + G I + Sbjct: 125 TWGITGASLALN-------------LSPIPFNGIVAGVRIGYVDGQFIAFPTQEQLKNSK 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 +D T + V+G E S++ L A+ Sbjct: 172 IDMVVAGTKDA-VTMVEG--ESLEVSEEEMVEALMFAQ 206 >gi|189346136|ref|YP_001942665.1| polynucleotide phosphorylase/polyadenylase [Chlorobium limicola DSM 245] gi|257096673|sp|B3EH06|PNP_CHLL2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189340283|gb|ACD89686.1| Polyribonucleotide nucleotidyltransferase [Chlorobium limicola DSM 245] Length = 736 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 RL GR ++R IS+ + A GS L G+T L T TL K + N Sbjct: 335 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNNADK 394 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RA++ V + I D Sbjct: 395 KFMLHYNFPPFSVGETGRIGSTGRREIGHG----NLAERAIKMVAPPEQEFPYTVRIVSD 450 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +AL D + + + + +G A+ + D+ Sbjct: 451 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKEGSNYAV---------LSDI 501 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + + L A+ ++ ++ Sbjct: 502 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILESALEQARRGRLHILDKMEEA 560 Query: 238 ISN 240 I + Sbjct: 561 IPS 563 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 28/229 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTA-----TLEEKVPMWIRNTKHGWITAEYGMLP 67 IS+ K A+GS +V+ GDT +L T T + ++ + G P Sbjct: 18 ISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPPNQDYFPLQVEYREKYSAAGKFP 77 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE+ R + R+I RALR + L QII+ Sbjct: 78 ---GGFFKRES---RPSEKEILSARLIDRALRPLFPDGYLFETQIIVTV----------- 120 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I+ + D L + + ++ + G + G I++ D E D+ Sbjct: 121 --ISSDQINDADVLGGLAASAAIMVSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDL 178 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D T + I ++G E S+ + D I L LQ + Sbjct: 179 DICIGGT-TDTICMLEG--EMKEISEAEMLDAIKFGHDAIRRLCALQNE 224 >gi|328553436|gb|AEB23928.1| polynucleotide phosphorylase/polyadenylase [Bacillus amyloliquefaciens TA208] gi|328911772|gb|AEB63368.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens LL3] Length = 707 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +Q+R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ + + Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T+ G + +Q + S++ L AK +++ Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILN 536 Query: 233 LQKDVISN 240 + Sbjct: 537 SMLSTLGE 544 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ +V++GDT +L TA+ E K + + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I + + + Sbjct: 75 ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ D Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRIDGQFIINPTV--DQLEKS 173 Query: 188 DAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D N V I V+ A+ ++ + + I LI Q+++++ Sbjct: 174 DINLIVAGTKDAINMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224 >gi|308173632|ref|YP_003920337.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens DSM 7] gi|307606496|emb|CBI42867.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens DSM 7] Length = 705 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +Q+R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ + + Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T+ G + +Q + S++ L AK +++ Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILN 536 Query: 233 LQKDVISN 240 + Sbjct: 537 SMLSTLGE 544 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ +V++GDT +L TA+ E K + + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I + + + Sbjct: 75 ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ D Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRIDGQFIINPTV--DQLEKS 173 Query: 188 DAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D N V I V+ A+ ++ + + I LI Q+++++ Sbjct: 174 DINLIVAGTKDAINMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224 >gi|152979779|ref|YP_001353149.1| polynucleotide phosphorylase/polyadenylase [Janthinobacterium sp. Marseille] gi|187610276|sp|A6SY02|PNP_JANMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151279856|gb|ABR88266.1| polyribonucleotide nucleotidyltransferase [Janthinobacterium sp. Marseille] Length = 711 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ V GS L G+T L ATL + G Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL + + S + + + Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALVAALPAPEDFSYSVRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + + +G A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGSKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G I +Q + +++ L AK+ ++ + Sbjct: 487 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALAQAKEGRVHILGEMEKA 545 Query: 238 ISN 240 + + Sbjct: 546 VPS 548 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67 +++L +++ A G+ LV DT +L T + + + T G +P Sbjct: 15 QVTLETGEIARQASGAVLVSIEDTVVLATVVAKKDAKPGQDFFPLTVDYVEKTYAAGRIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + L QIII + + Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSVNPEIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ GA AL G V A G + G +++ + + D+ Sbjct: 129 AAMIGASAALSVAGI-------------PFAGPVGAARVGYIDGQYVLNPTTSQLAKSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T I + +E S++ + +++ +I D++ + Sbjct: 176 DLVVAGT---EIAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHDLVRD 225 >gi|154686086|ref|YP_001421247.1| polynucleotide phosphorylase/polyadenylase [Bacillus amyloliquefaciens FZB42] gi|187470933|sp|A7Z4U0|PNP_BACA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|154351937|gb|ABS74016.1| PnpA [Bacillus amyloliquefaciens FZB42] Length = 707 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +Q+R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ + + Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T+ G + +Q + S++ L AK +++ Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILN 536 Query: 233 LQKDVISN 240 + Sbjct: 537 SMLSTLGE 544 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ +V++GDT +L TA+ E K + + + G +P Sbjct: 15 RQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I + D + Sbjct: 75 ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ D Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRIDGKFVINPTV--DQLEKS 173 Query: 188 DAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D N V I V+ A+ ++ + + I LI Q+++++ Sbjct: 174 DINLIVAGTKDAINMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224 >gi|313674338|ref|YP_004052334.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM 4126] gi|312941036|gb|ADR20226.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM 4126] Length = 713 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 90/248 (36%), Gaps = 28/248 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR+ +++R I A GS + G+T LTT TL K+ + + + + Sbjct: 321 RLDGRKLDEIRPIWSEIDYLPSAHGSAVFTRGETQSLTTVTLGTKLDEQMVDGAVHSGYN 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y STG R+ G + RAL+ ++ I + D Sbjct: 381 KFILHYNFPAFSTGEARPNRGPGRREVGHG----NLALRALKQILPTPDELPYTIRVVSD 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 437 ILESNGSSSMATVCAGSLALMDAGI-------------PIKAPVSGIAMGLISDPETGKY 483 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T+ G I Q + S + LN AK + Sbjct: 484 AILSDILGDEDHIGDMDFKVTGTEKG-ITACQMDIKVDGLSSELMMEALNQAKAGRDHIR 542 Query: 232 KLQKDVIS 239 I+ Sbjct: 543 NEMSKTIA 550 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 33/237 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 G REIS+ K A+GS V+ GDT LL T E V + + Sbjct: 14 PDG------REISIETGKLAKQADGSVEVRMGDTILLATVVSNKEAREGVDFLPMSVDYQ 67 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A G +P G +KRE G+ R++ RALR + Q++I Sbjct: 68 EKFASSGKIP---GGFLKRE---GKLSDYEVLTSRLVDRALRPLFPSDYHAETQVMIQLF 121 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ++ + L D L + + G ++ + G + G I++ Sbjct: 122 SLEEN-------------DLPDALAALAASAALTASDIPFAGPISEVRVGRVNGEMIINP 168 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + + D+D T +I+ V+G E S+ +N A + I + Q Sbjct: 169 NSKQLEESDIDMIVAATID-NIMMVEG--ELKEISEQEMVEAINFAHESIKLQCQAQ 222 >gi|319761758|ref|YP_004125695.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus denitrificans BC] gi|330826538|ref|YP_004389841.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus denitrificans K601] gi|317116319|gb|ADU98807.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus denitrificans BC] gi|329311910|gb|AEB86325.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus denitrificans K601] Length = 731 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L +TL + + Sbjct: 317 RIDGRDTRTVRPIEIRTSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREVGHG----RLAKRALVACLPSKEEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNKFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 +++ +++ A G+ LV DT +L T + + + T G +P Sbjct: 18 VTMETGEIARQASGAVLVNIDDTVVLATVVASKNAKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + ++I + + A Sbjct: 77 --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ +D Sbjct: 132 AMIATSAALSVSGI-------------PFNGPIGAARVGYINGEYVLNPGQTARKNSQMD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 T++ ++ +E +D + K I + +L +D Sbjct: 179 LVVAGTETAVLMV---ESEALQLPEDVMLGAVVYGHEQGKIAIDAIHELVRDA 228 >gi|242006246|ref|XP_002423964.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus humanus corporis] gi|212507240|gb|EEB11226.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus humanus corporis] Length = 708 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 24/252 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52 +R GR ++R I + K GS L + G T + T L+ +++ M Sbjct: 297 IRCDGRLPVELRNIECESNLFKPLHGSALFQRGQTQVFCTVALDSPSSALKMDRISMLTS 356 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K Y P +T K G G R + +AL++ + + I Sbjct: 357 GLKEKNFFVHYEFPPFATKEIGK----LGPIGRREIGHGSLAEKALKANIPENF--PFTI 410 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A + G +AL D + + V K G++ Sbjct: 411 RLTSEVLESNGSSSMATVCGGTLALLDAGVPLIKECAGVAMGVVTKWD--DDKSGIIDYV 468 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL-- 230 + D+ ED D+D T + HI +Q + + AK I+ Sbjct: 469 ILTDILGIEDYFGDMDMKVAGTKN-HITAIQMDVKTPGLPIKIVMESITQAKQAISTTLT 527 Query: 231 -----IKLQKDV 237 + LQK V Sbjct: 528 RMFKDVDLQKKV 539 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 81/219 (36%), Gaps = 34/219 (15%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTGNRV 74 K+ +G V F DT ++ TA +K VP+ + + A G +P N + Sbjct: 10 KFTDGCATVTFKDTTVMATAVSSDKGGMYSGFVPLTVSFQQKA---AALGRIPL---NFL 63 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 +RE Q I RMI R+LR + + QI+ + + + +I A Sbjct: 64 RRELG---QNENEILISRMIDRSLRPLFPANFNNETQIVCNPLAMDGENFPDVLSINAAS 120 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194 AL + G V A+ G++ I++ D S ++ V Sbjct: 121 AALA-------------VSNIPWNGPVGAVRVGLVDDNIIINPDKNLLSKSSLNLVVVSK 167 Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++V ++GS +L K +++ K+ Sbjct: 168 AKHYVVMLEGSCSNIL-----LNDLLRAIKKGVSECQKI 201 >gi|149927537|ref|ZP_01915791.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105] gi|149823810|gb|EDM83036.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105] Length = 714 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I++ V A GS L G+T L TL + Sbjct: 320 RIDGRDTRTVRPITVRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQMIDAVAGEYRD 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + A R+ G R+ RA+ ++ + + + Sbjct: 380 RFMFHYNMPPYATGECGRMGAPKRREIGHG----RLARRAVEMMLPAPEDFQYTMRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G ++L D LK VA I+ G++ Sbjct: 436 ITESNGSSSMASVCGGALSLMDAGV-------------PLKQLVAGIAMGLIKEENKFAV 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G + +Q + +++ L A++ ++ + Sbjct: 483 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRMHILGI 541 Query: 234 QKDVISNEV 242 K+ V Sbjct: 542 MKEATGGNV 550 Score = 56.3 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 29/194 (14%) Query: 37 LLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR 96 ++ + + + + G +P G KRE G+ + R+I R Sbjct: 44 VVAAKSAKPGQDFFPLTVDYVEKFYAAGRIP---GGFFKRE---GKGTEQETLNARLIDR 97 Query: 97 ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156 LR + Q+ + I + A+ GA AL Sbjct: 98 PLRPLFPEGFFNEVQVTLTVMSINPEVNPDIPAMLGASAALSIAGI-------------P 144 Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT------ 210 G V G + +++ + +D T++ ++ V+ A + Sbjct: 145 FNGPVGGARVGYINDQYVLNPTATQLKDSKMDLIVAGTEAA-VLMVESEAHELSEEIMLG 203 Query: 211 ---FSQDHFFAMLN 221 F + A +N Sbjct: 204 GIMFGHEQMQAAIN 217 >gi|323144053|ref|ZP_08078697.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei YIT 12066] gi|322416166|gb|EFY06856.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei YIT 12066] Length = 720 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKHG 57 R+ GR +R I++ + GS L G+T + T TL E + + T+ Sbjct: 319 RIDGRTLRMIRPITVASGILPRVHGSALFTRGETQAIATCTLGSERDAQTFEDMSGTRSD 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ RALR+V+ I + + Sbjct: 379 RFILHYNFPPYCVGETGLIGSPKRREIGHG----RLAKRALRAVLPDMERFPYTIRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D + + V +G A+ + D+ Sbjct: 435 ITESNGSSSMASVCGGSLALFDAGVPCKAAVAGIAMGLVKEGDRVAV---------LTDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L A L+K+ Sbjct: 486 MGDEDHLGDMDFKVAGTTEG-VTALQMDIKTDGITREIMQQALTDAHAARLHLLKIMGRA 544 Query: 238 ISNE 241 + N Sbjct: 545 LPNP 548 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 44/239 (18%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 I+L + A+ + + DT + T + + +T Y + G Sbjct: 17 ITLETGAIGRQADSAVMASMDDTTVFATVVCNRRE--QVEGRDFFPLTVNYQERSYAVGR 74 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R LR + DG Sbjct: 75 IPVSFFRRE---GRASEGETLISRLIDRPLRPLFP------------------DGFVNEV 113 Query: 129 AITGAWVAL-----HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 + ++ D + + + G + A G + G +++ E Sbjct: 114 QVVVTVMSANPEIPTDIISIIAASAALSTSGLPWNGPLGAARVGYINGQYVLNPLTSETE 173 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D+D V +V V+ +E +D + + Q+ V+ NE+ Sbjct: 174 ESDLDL-VVAGSDKAVVMVE--SEAKILPEDVMLGAVMYGHE--------QQQVVINEI 221 >gi|258645480|ref|ZP_05732949.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM 15470] gi|260402833|gb|EEW96380.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM 15470] Length = 694 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55 +R GR +++R IS + GS L G T LT TL I + T+ Sbjct: 311 IRPDGRALDEIRPISCEVGLLPRVHGSALFTRGQTQALTITTLAPMSETQIIDDLTQETE 370 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I +Y S G R+ G + RAL V+ I + Sbjct: 371 KRYIH-QYNFPSYSVGETKSSRGPGRREIGHG----ALAERALIPVIPTVEEFPYAIRVV 425 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++++++G + A++ G+ ++L + +K VA I+ G++ Sbjct: 426 SEILESNGSSSQASVCGSTMSLMNAGV-------------PIKAPVAGIAMGLVNEGEHF 472 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + S++ A L A+ Sbjct: 473 TVLTDIQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIHGLSREILLAALQQAQKG 526 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 31/236 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTT--ATLE--EKVPMWIRNTKHGWITAEYGML 66 R + + K A G+ LV++G+T +L T A+ E E + + + G + Sbjct: 12 RSLIVETGKMAKQASGAVLVRYGETVVLVTSTASKEAREGMDFFPLTVDYEEKMYAVGKM 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGG 124 P G ++RE GR G + R+I R +R + D I + V+ D Sbjct: 72 P---GGFLRRE---GRPGNSAILNARLIDRPIRPLFD--KRCRNDIHVMATVLSVDYDNA 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 + GA +L G +A + G + G +++ + Sbjct: 124 PELCGMLGASASL-------------GISDIPWDGPIAGVRVGCVDGKFVINPTQEQLKV 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ +++ I+ V+G A+ A ++ + + I +L+ QK +I Sbjct: 171 STLNITVAGSETA-ILMVEGGAQEAP--EEDVLDAIMFGHETIKELVAFQKKIIEE 223 >gi|254992778|ref|ZP_05274968.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes FSL J2-064] Length = 658 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 251 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 310 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 311 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 366 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 367 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 413 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 414 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 472 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 19/169 (11%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G +KRE GR R+ R+I R +R + QI + D AA+ Sbjct: 9 GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAM 65 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 G+ VAL +G +A + G + G +++ + D+ Sbjct: 66 LGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLT 112 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 113 VAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 158 >gi|116872762|ref|YP_849543.1| polynucleotide phosphorylase/polyadenylase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460999|sp|A0AID2|PNP_LISW6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116741640|emb|CAK20764.1| polynucleotide phosphorylase (PNPase) [Listeria welshimeri serovar 6b str. SLCC5334] Length = 723 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEDFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL +G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|229918674|ref|YP_002887320.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium sp. AT1b] gi|259534123|sp|C4L6J6|PNP_EXISA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|229470103|gb|ACQ71875.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium sp. AT1b] Length = 738 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ + +R ++ + A G L G T +++ AT + ++ I ++ Sbjct: 315 VRPDGRRPDVIRPLASEVGLLPRAHGVGLFTRGQTQVMSVATLGVIGDAQIIDGIGLEEN 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RAL ++ A I + Sbjct: 375 KRFMHHYNFPPFSVGEARPVRAPGRREIGHG----ALGERALLPIIPKEADFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ G Sbjct: 431 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLIMEGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + A +++ L A+ ++ Sbjct: 478 VLTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIAGITREILEEALEQARVGRLHILD 536 Query: 233 LQKDVISNE 241 + + Sbjct: 537 HMLETLETP 545 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 88/232 (37%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +S+ ++K A GS LV++GDT +L T T + + + + G +P Sbjct: 15 RPLSVEVGQLAKQANGSALVRYGDTVVLATVTASKAPKDLDFFPLTVNYEEKLYSVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR G + R+I R +R + Q++I D Sbjct: 75 ---GGFLRRE---GRPGENAILTSRLIDRPIRPLFPDGFRHDIQVMIYVMSNDPDCSAEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A + G +AL G +A ++ G + G +++ + D+ Sbjct: 129 AGMLGTSIALS-------------ISDVPFDGPIAGVTVGRVDGEFVINPTTAQLEKTDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T + I V+ A +D + + I LI Q++++ Sbjct: 176 ELQVAGTSTA-INMVEAGANEVP--EDVMLESILFGHEEIKRLIAFQQEIVE 224 >gi|294791724|ref|ZP_06756872.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27] gi|294456954|gb|EFG25316.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27] Length = 689 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN----TK 55 +R GRQ +++R IS V GS L G T +L T I T+ Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDGLGVETE 368 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y S G R+ G + RAL V+ + + Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEDFPYALRLV 423 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G + +Q + + S++ L A ++ Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIM 529 Query: 232 KLQKDVISNE 241 + D I+ Sbjct: 530 GIMLDTIAEP 539 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 28/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP Sbjct: 11 RMLTIETGELAKQASGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KREA R + R+I R +R + + ++ + D Sbjct: 71 ---GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + GA AL G +A + G + G +V+ + Sbjct: 125 CGMIGASAALS-------------ISDVPWNGPIAGVRMGRINGEFVVNPTKS--QLEET 169 Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D N V+ I+ V+G AE +D ++ A + I ++ Q+D+ + Sbjct: 170 DLNIVVAGTKDAILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQEDMTAK 221 >gi|291533814|emb|CBL06927.1| RNase PH [Megamonas hypermegale ART12/1] Length = 91 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 1/83 (1%) Query: 161 VAAISCGM-LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219 +AAIS G+ PI+DL Y EDST D N VMT GH VE+QG+ E+ F+ + F M Sbjct: 1 MAAISVGISKDNEPILDLCYEEDSTAIADMNIVMTGEGHFVEIQGTGEKQPFTHEQFSKM 60 Query: 220 LNLAKDRIADLIKLQKDVISNEV 242 L A+ I +LI QKD++ N++ Sbjct: 61 LAYAQKGIDELISYQKDILGNDL 83 >gi|294793588|ref|ZP_06758725.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44] gi|294455158|gb|EFG23530.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44] Length = 689 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN----TK 55 +R GRQ +++R IS V GS L G T +L T I T+ Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDGLGVETE 368 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y S G R+ G + RAL V+ + + Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEDFPYALRLV 423 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G + +Q + + S++ L A ++ Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIM 529 Query: 232 KLQKDVISNE 241 + D I+ Sbjct: 530 GIMLDTIAEP 539 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 28/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP Sbjct: 11 RMLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KREA R + R+I R +R + + ++ + D Sbjct: 71 ---GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + GA AL G +A + G + G +V+ + Sbjct: 125 CGMIGASAALS-------------ISDVPWNGPIAGVRMGRINGEFVVNPTKS--QLEET 169 Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D N V+ I+ V+G AE +D ++ A + I ++ Q+D+ + Sbjct: 170 DLNIVVAGTKDAILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQEDMTAK 221 >gi|313638085|gb|EFS03354.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL S4-171] Length = 723 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEDFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILE 537 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A+ S++ + + I L + Q+ +I Sbjct: 177 TVAGTHDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222 >gi|224418070|ref|ZP_03656076.1| polynucleotide phosphorylase/polyadenylase [Helicobacter canadensis MIT 98-5491] gi|253827399|ref|ZP_04870284.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis MIT 98-5491] gi|313141607|ref|ZP_07803800.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491] gi|253510805|gb|EES89464.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis MIT 98-5491] gi|313130638|gb|EFR48255.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491] Length = 715 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 83/242 (34%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNTK 55 R GR+ ++R IS+ A S L G T L ATL ++ + Sbjct: 333 RADGRELKEVRPISIETNFLPNAHSSALFTRGQTQALVVATLGGEMDAQSYELLTDKAPL 392 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G A R+ G + RAL + V L + I + Sbjct: 393 KERFMVHYNFPPFSVGEASSISAPGRRELGHG----NLAKRALEASVINGDL--KTIRLV 446 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + V + AI + Sbjct: 447 SEILESNGSSSMATVCGGSLALAAAGIKCTSLIAGVAMGLVCENDKYAI---------LT 497 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G I +Q + + L AK+ ++ L + Sbjct: 498 DIMGLEDHDGDMDFKIAGSRRG-ITAMQMDIKLGGLKSEILQKALMQAKEARNHILDLME 556 Query: 236 DV 237 + Sbjct: 557 EA 558 Score = 71.7 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 41/229 (17%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 +K GS ++ G+ +L T ++ + + +T +Y G P G Sbjct: 20 FAKQCSGSVYLQSGNNVVLATIAIDTQE---VVEEDFLPLTVQYIEKAYAAGKFP---GG 73 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KREA + G R+I R+LR + QI + V+ AD Sbjct: 74 YIKREA---KPGDFETLSARIIDRSLRPLFPKDYCYPTQITL--MVLSADED-------- 120 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTID---- 186 A L + + L V+A+ G + G +++ L E+ST+D Sbjct: 121 ---ADLQLLALNAASAALYVSEIPLSFPVSAVRIGRIEGEFVINPSLKALEESTLDLFVS 177 Query: 187 -VDANFVMTDSGHIVEVQGSAERATF-----SQDHFFAMLNLAKDRIAD 229 V + +M + V E F S++ +L +AK I+ Sbjct: 178 GVKEDLLMIEMRSFGGVAIHQENTEFSANELSEEEMIEVLEIAKKAISQ 226 >gi|149185848|ref|ZP_01864163.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp. SD-21] gi|148830409|gb|EDL48845.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp. SD-21] Length = 763 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57 R+ GR+ +Q+R I + GS L G+T + T TL E++ + + Sbjct: 316 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLSYN 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R+ G ++ RAL V+ I I D Sbjct: 376 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAWRALHPVLPDHEDFPYTIRILSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D +E + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGEDFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D +++G I +Q + A +Q+ L AK ++ Sbjct: 483 LGDEDHLGDMDFKVAGSEAG-ITTMQMDIKVAGITQEIMAKALEQAKAGRQHILGEMAKA 541 Query: 238 ISN 240 + + Sbjct: 542 LGS 544 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 33/227 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A+G+ L +G+T +L +++E + + + G +P Sbjct: 16 LTLETGQIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEKFSAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR-- 126 G KRE GR + R+I R +R + I + C V+ DG T Sbjct: 75 --GGFFKRE---GRATEKETLTSRLIDRPVRPLFPEGFYNE--INVICQVLSFDGETEPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDST 184 A+ A AL G + A G G ++ L D Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGFRNGEYELNPSLANALDEE 174 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 +D T ++ V+ +E +++ + A D ++ Sbjct: 175 GRLDLVVAATQDA-VMMVE--SEAKELTEEEMLGAVAFAHDEARKVV 218 >gi|313633394|gb|EFS00232.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL N1-067] Length = 723 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEDFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILE 537 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A+ S++ + + I L + Q+ +I Sbjct: 177 TVAGTHDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222 >gi|315302988|ref|ZP_07873706.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL F6-596] gi|313628638|gb|EFR97053.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL F6-596] Length = 723 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEDFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILE 537 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A+ S++ + + I L + Q+ +I Sbjct: 177 TVAGTHDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222 >gi|289434612|ref|YP_003464484.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170856|emb|CBH27398.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 723 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEDFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILE 537 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A+ S++ + + I L + Q+ +I Sbjct: 177 TVAGTHDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222 >gi|282848815|ref|ZP_06258208.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC 17745] gi|282581469|gb|EFB86859.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC 17745] Length = 689 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN----TK 55 +R GRQ +++R IS V GS L G T +L T I T+ Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDGLGVETE 368 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y S G R+ G + RAL V+ + + Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEDFPYALRLV 423 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G + +Q + + S++ L A ++ Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIM 529 Query: 232 KLQKDVISNE 241 + D I+ Sbjct: 530 GIMLDTIAEP 539 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 28/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KREA R + R+I R +R + + ++ + D Sbjct: 71 ---GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + GA AL G +A + G + G +V+ + Sbjct: 125 CGMIGASAALS-------------ISDVPWNGPIAGVRMGRINGEFVVNPTKA--QLEET 169 Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D N V+ I+ V+G AE +D ++ A + I ++ Q+D+ + Sbjct: 170 DLNIVVAGTKDAILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQEDMTAK 221 >gi|120609946|ref|YP_969624.1| polynucleotide phosphorylase/polyadenylase [Acidovorax citrulli AAC00-1] gi|187470931|sp|A1TLL2|PNP_ACIAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120588410|gb|ABM31850.1| 3' exoribonuclease [Acidovorax citrulli AAC00-1] Length = 758 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L +TL + + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ I + + Sbjct: 377 RFMFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + + +++ A G+ LV DT +L T + + + + T G +P Sbjct: 18 VVMETGEIARQATGAVLVNIDDTVVLATVVASKSAKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + ++I + + A Sbjct: 77 --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTVSLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ +D Sbjct: 132 AMIAVSAALSVSGI-------------PFNGPIGAARVGYINGEYVLNPGQTARKNSQMD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 T++ ++ +E S+D + + I + +L +D Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEDIMLGAVVFGHEQGRIAINAIHELVRDA 228 >gi|302502983|ref|XP_003013452.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371] gi|291177016|gb|EFE32812.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371] Length = 302 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 13/208 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59 +RL GR+ N++R + + + GS + G+T +L T + I Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + +R K+ A G R + E+ ++ A + + I + Sbjct: 74 NVVVNLAGFANVDRKKKSAAGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCG---- 171 V+ +DG A + +AL D M + + A++ + G Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGINES 193 Query: 172 -YPIVDLDYGED---STIDVDANFVMTD 195 P++D+ E+ + V M D Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPD 221 >gi|23099059|ref|NP_692525.1| polynucleotide phosphorylase/polyadenylase [Oceanobacillus iheyensis HTE831] gi|81746388|sp|Q8EQT7|PNP_OCEIH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|22777287|dbj|BAC13560.1| polyribonucleotide nucleotidyltransferase alpha chain [Oceanobacillus iheyensis HTE831] Length = 705 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S V GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKVDEIRPLSSRIHVLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ I + Sbjct: 375 KRFMHHYNFPQYSVGE----TGPIRGPGRREIGHGALGERALEKVIPDDKEFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGDDYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T +G + +Q + S+D L+ AK ++ Sbjct: 478 ILTDIQGMEDALGDMDFKVAGTANG-VTALQMDIKIDGLSRDILEEALSQAKKGRMQILD 536 Query: 233 LQKDVISNE 241 I Sbjct: 537 SMLATIKEP 545 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLPR 68 + ++ ++K A G+C++ +GDT +L TA+ E K +P + + G +P Sbjct: 16 KFTVEVGELAKQANGACMIHYGDTSVLSVATASSEPKDLPFFPLTVNYEERLYAVGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR ++ R+I R +R + Q+I + D + A Sbjct: 75 --GGFIKRE---GRPSEKAILSSRLIDRPIRPLFPDGFRNEVQVISTVMSVDQDCPSEIA 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL + +A ++ G + G I++ +++ D++ Sbjct: 130 AMIGSSIALS-------------VSDIPFEQPIAGVNVGRVDGEFIINPTIEQEAKSDIE 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A +D + + I L+ Q++++ Sbjct: 177 LTVAGTKDA-INMVEAGANEVP--EDIMLEAIMFGHEEIKRLVAFQEELVK 224 >gi|116748674|ref|YP_845361.1| polynucleotide phosphorylase/polyadenylase [Syntrophobacter fumaroxidans MPOB] gi|187611325|sp|A0LHM4|PNP_SYNFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116697738|gb|ABK16926.1| Polyribonucleotide nucleotidyltransferase [Syntrophobacter fumaroxidans MPOB] Length = 699 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR+ +++R I++ V GS + G+T +L TL +E+ + Sbjct: 313 RIDGRRFDEIRPINIQAGVLPRTHGSAVFTRGETQVLAVVTLGSSSDEQKIEALAGETFK 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + R++++V+ I + + Sbjct: 373 SFMLHYNFPAFSVGEVRPLRGPGRREIGHG----ALAERSVKAVLPRDGEFPYTIRVVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V++++G + A + G+ +AL D + V I+ G++ Sbjct: 429 VLESNGSSSMATVCGSSLALMDAGV-------------PITEPVGGIAMGLVKEGDKIIV 475 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D ++ G I +Q + A + L A+ ++ Sbjct: 476 LSDILGDEDHLGDMDFKVTGSERG-ITAIQMDVKIAGIDRGIMQRALEQARAGRIFILGK 534 Query: 234 QKDVIS 239 K+V+S Sbjct: 535 MKEVLS 540 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 28/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + +++ A GS L+++GDT +L AT E+++ + +Y + + Sbjct: 12 RPMVFEAGEIARQAGGSVLMRYGDTVVLIAATKEDRI---REGIDFVPLMVDYQEMSYAA 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +RE GR + R+I R +R + Q++ + + Sbjct: 69 GRIPGGFFRREI--GRPSEKETLTSRLIDRPIRPLFPKKYCYETQVVATVLSVDMENEPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+TGA ALH +G VAA+ G + G ++ E ++ Sbjct: 127 VVALTGASTALH-------------ISPVPFQGPVAAVRVGRINGSFAINPSAKE--LLE 171 Query: 187 VDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D N V+ S +V V+G A+ S+D ++ I ++ Q + Sbjct: 172 SDLNVVVAGSRDAVVMVEGGAD--FVSEDDLVDAIDFGHKAILPILDAQDE 220 >gi|326422493|gb|EGD71890.1| Putative exosome complex RNA-binding protein [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 253 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 94/248 (37%), Gaps = 19/248 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL R+ + R +++ V +++GS V+ G+T ++ + P + G + Sbjct: 17 LRLDQREAFEGRRMAIKDNVINHSDGSAYVELGNTKVIAGVKVLNGTP-FPDRPADGALI 75 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIII 114 + + ++ G + S E+ R+ R +R ++DLS L G + + Sbjct: 76 VNFELSELTSNY-------PGDRINSSIEVGRVTDRGIRESNLIDLSKLCVEEGKTVLFV 128 Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 D+ I +G A A A+ + +E KF L + + + G Sbjct: 129 YVDIVCINNEGNLFDAGNIAALRAILNTRYSIEGKEGKFSLPIDRTKLAISHTFTKINGT 188 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D E++ D + + S I +Q F+ + + A + + K Sbjct: 189 IFFDPSAEEENVEDTKLSIGI--SDKINSLQKGG-DGFFTAEEVDKCIEKAIELREERFK 245 Query: 233 LQKDVISN 240 + D IS+ Sbjct: 246 ILMDGISD 253 >gi|326316095|ref|YP_004233767.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372931|gb|ADX45200.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 759 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L +TL + + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ I + + Sbjct: 377 RFMFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 39/237 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + + +++ A G+ LV+ T +L T + + + + T G +P Sbjct: 18 VVMETGEIARQANGAVLVEIDGTVILATVAASKSAKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + L +++ + + A Sbjct: 77 --GSFFKREA---KPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVVHTVSLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G + G +++ +D Sbjct: 132 AMIGVSAALAISGI-------------PFAGPIGAARVGYINGEYVLNPGQTARKNSQMD 178 Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 T++ ++ E Q +E F + A I + +L ++ Sbjct: 179 LVVAGTEAAVLMVESEAQQLSEDIMLGGVVFGHEQ-------ANIAINAIHELVREA 228 >gi|222100220|ref|YP_002534788.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana DSM 4359] gi|254782743|sp|B9K8Y9|PNP_THENN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221572610|gb|ACM23422.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana DSM 4359] Length = 707 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR+ N++R IS + GS L G+T L TL + + I +T Sbjct: 316 IRADGRKPNEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + RAL++++ I + Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGH----LAERALKNMLPPEEEFPYTIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + +AL D + + +L+ I + D Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGVPIRKHVAGIAMGLILEEDAEVI---------LTD 482 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + + S + L A++ ++ + Sbjct: 483 IIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILDKMYE 541 Query: 237 VIS 239 IS Sbjct: 542 TIS 544 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 37/239 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 RE+ + V+K + G+ LV+FGDT +L TA + +KV I +T E+ Sbjct: 11 RELVVQHGKVAKQSSGAVLVRFGDTAVLATANISDKV---IEGIDFVPLTVEFQERFYAA 67 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G +KRE G+ + R+I R +R + Q+I+ V+ AD Sbjct: 68 GKIP---GGFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEIQVIVT--VLSADP 119 Query: 124 G--TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 I +AL+ +G VA I G G I + Sbjct: 120 NVPPDVVGIFAVSLALN-------------VSKIPFEGIVAGIRIGYRDGQFIAFPTEED 166 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T + V+G A+ S++ L A I +L+ Q++++S Sbjct: 167 IEKGLMDITVAGTKDA-VTMVEGEAKE--VSEEDMVKALRFAHSVIKELVDFQEEILSE 222 >gi|237738958|ref|ZP_04569439.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 2_1_31] gi|229423558|gb|EEO38605.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 2_1_31] Length = 699 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKADEQLIDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RALR V+ I + + Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPSEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A + +++L Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARQQILEL 545 Query: 234 QKDVISNE 241 + IS Sbjct: 546 MNNTISKP 553 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 33/231 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +S+ + G+ ++++GDT +L+TA + + + G Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVILSTANRSKEARKGADFFPLTVDYVEKFYSTGKF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + I R+I R +R + + + I V+ D Sbjct: 74 P---GGFNKRE---GRPSTNATLIARLIDRPIRPMFPEGF--NYDVHIVNTVLSYDEVNT 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 I G+ +AL G VA ++ G G I++ E Sbjct: 126 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPAELEE 172 Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ++D + T ++VE A ++ + A D I + + Q Sbjct: 173 SELDLSVAGTKDAVNMVE----AGAKELDEETMLKAIMFAHDNIKKICEFQ 219 >gi|255030484|ref|ZP_05302435.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes LO28] Length = 420 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 198 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 257 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 258 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 313 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 314 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 360 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 361 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 419 Score = 42.0 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 16/120 (13%) Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 D AA+ G+ VAL +G +A + G + G +++ Sbjct: 2 DQDCSPEMAAMLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTI 48 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + D+ T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 49 EQAEKSDISLTVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 105 >gi|255034850|ref|YP_003085471.1| polynucleotide phosphorylase/polyadenylase [Dyadobacter fermentans DSM 18053] gi|254947606|gb|ACT92306.1| Polyribonucleotide nucleotidyltransferase [Dyadobacter fermentans DSM 18053] Length = 713 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 84/235 (35%), Gaps = 28/235 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR +Q+R I+ A GS L G+T LTT TL K I +T + Sbjct: 321 RLDGRALDQVRPIASEVDFLPNAHGSALFTRGETQSLTTVTLGTKQDEQIVDTPLKYGYS 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y STG R+ G + RAL+ V+ I I D Sbjct: 381 KFMLHYNFPGFSTGEVKPNRGPGRREVGHG----NLALRALKKVLPAEGDNPYTIRIVSD 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 437 ILESNGSSSMATVCAGSLALMDSGLK-------------IKAPVSGIAMGLISDEATGKY 483 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I Q + S + L AK Sbjct: 484 AVLSDILGDEDHLGDMDFKVTGTAEG-ITACQMDMKVNGLSFEVLTEALMQAKAG 537 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 30/180 (16%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 G REI++ K A+GS +V+ G+T LL T ++E + + + Sbjct: 13 PDG------REITIETGKLAKQADGSVVVRLGNTMLLATVVANKDIKEGLDFLPLSVDYQ 66 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A G +P G+ +RE G+ R++ R LR + Q+ I Sbjct: 67 EKFASAGRIP---GSFQRRE---GKLSDHEVLTSRLVDRVLRPLFPDDYHAEVQVNI--L 118 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +I AD AL D L + + G V+ + + G +++ Sbjct: 119 LISAD-----------AEALPDALAALAASAALAASDIPFGGPVSEVRVAKIDGEYVINP 167 >gi|315185936|gb|EFU19700.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila DSM 6578] Length = 709 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 27/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR +R I+ V GS L G+T L TL +E++ + K Sbjct: 311 IRTDGRGPEDIRPITCEVGVLPRTHGSALFTRGETQALAITTLGTVFDEQIMDDLEGDKR 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G V R R+ G + RAL +V+ + + Sbjct: 371 ENFMLHYNFPPFSVGE-VGRLYTGRREIGHGH----LAHRALEAVLPSKDDFPYTLRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + G+ ++L + +K VA I+ G++ Sbjct: 426 EILESNGSSSMATVCGSTLSLLNAGV-------------PIKKPVAGIAMGLVTDGERTV 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I Q + L A+ ++ Sbjct: 473 ILSDILGEEDHFGDMDFKVAGTEEG-ITAFQMDIKIKNIDPATMRKALEQARRGRLHILG 531 Query: 233 LQKDVISNE 241 + IS Sbjct: 532 IMNQAISEP 540 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 RE+ LT + A G+ ++G T +L TA ++E + + + G + Sbjct: 12 RELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYNEKYYAAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + S R+I I + AD Sbjct: 72 P---GGFFKRE---GRPREKEILVSRLIDRPMRPLF--SKAFKREIQIIPTTVSAD---- 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D + + + G V A+ G++ G +++ + Sbjct: 120 -------QINTPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASA 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T G I V+G A+ S+D + +A+ I L K Q + Sbjct: 173 LDIVVAGTLEG-ITMVEGGAKE--VSEDTLVEAIEIARGAIVSLCKAQLE 219 >gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus DSM 14977] gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus DSM 14977] Length = 721 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R GR ++R I + V + GS + G+T +L T TL I + + Sbjct: 326 RADGRGPAEIRPIWIEVDVLPRSHGSAIFTRGETQVLGTVTLGTGRDEQIIDDLGLDESE 385 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + VS R+ G + RAL+ ++ I + D Sbjct: 386 DFLVHYNFPPYSTGEVKRLRGVSRREVGHG----NLAKRALKPMLPEKDAFPYTIRVVGD 441 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V++++G + A + +AL D +K VA I+ G++ G P+ Sbjct: 442 VLESNGSSSMATVCAGCLALMDAGV-------------PIKKPVAGIAMGLVKPEEGEPV 488 Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 V D+ ED+ D+D T G + +Q + L A+ ++ Sbjct: 489 VLTDILGMEDALGDMDFKVTGTRDG-VTALQMDIKVQGLDAAVMRRALEQARAARLAILD 547 Query: 233 LQKDVISNE 241 + V+ Sbjct: 548 QMEQVLPEP 556 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 26/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 RE+ + ++ A GS V++G+T ++ TA +P + G +P Sbjct: 21 RELVIETGKYARQASGSVWVRYGETIVMATAEGSKEPIDMPFLPLTVEFEERHYAIGKIP 80 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ ++RE GR G ++ RM R +R + Q+I+ V+ AD Sbjct: 81 ---GSFMRRE---GRPGEKAILSARMTDRPIRPLFPKGFRHEVQVILT--VLAAD----- 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 D L + + G +A++ G + G +++ + D+ Sbjct: 128 ------QQNPPDVLGPLAASAALMLSDVPWDGPIASVRVGRVNGELVLNPTLQQLDESDL 181 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D V I+ V+ A+ S+D L+ A + LI LQ+++ Sbjct: 182 DL-IVAGSKDAIIMVEAGAKE--VSEDLLVEALDFAHREMQPLIALQEEM 228 >gi|307718799|ref|YP_003874331.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila DSM 6192] gi|306532524|gb|ADN02058.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila DSM 6192] Length = 709 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 27/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR +R I+ V GS L G+T L TL +E++ + K Sbjct: 311 IRTDGRGPEDIRPITCEIGVLPRTHGSALFTRGETQALAITTLGTVFDEQIMDDLEGDKR 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G V R R+ G + RAL +V+ + + Sbjct: 371 ENFMLHYNFPPFSVGE-VGRLYTGRREIGHGH----LAHRALEAVLPSKDDFPYTLRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + G+ ++L + +K VA I+ G++ Sbjct: 426 EILESNGSSSMATVCGSTLSLLNAGV-------------PIKKPVAGIAMGLVTDGERTV 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I Q + L A+ ++ Sbjct: 473 ILSDILGEEDHFGDMDFKVAGTEDG-ITAFQMDIKIKNIDPATMRKALEQARRGRLHILG 531 Query: 233 LQKDVISNE 241 + IS Sbjct: 532 IMNQAISEP 540 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 RE+ LT + A G+ ++G T +L TA ++E + + + G + Sbjct: 12 RELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYNEKYYAAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + S R+I I + AD Sbjct: 72 P---GGFFKRE---GRPREKEILVSRLIDRPMRPLF--SKAFKREIQIIPTTVSAD---- 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D + + + G V A+ G++ G +++ + Sbjct: 120 -------QINTPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASA 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T G I V+G A+ S+D + +A+ I L K Q + Sbjct: 173 LDIVVAGTLEG-ITMVEGGAKE--VSEDTLVEAIEIARGAIVSLCKAQLE 219 >gi|94264886|ref|ZP_01288660.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] gi|93454656|gb|EAT04924.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] Length = 703 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 20/243 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ R+ +++R I+ GS L G+T +L +ATL +E+ + Sbjct: 322 RIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESLSGMNFK 381 Query: 58 WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G R R R + RA+++V+ + I + Sbjct: 382 PFMLHYNFPPYCVGEVRFLRG-----PSRRDIGHGALAERAIQAVLPDADSFPYTIRVVS 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + GA ++L D M+ + + + +G AI + D Sbjct: 437 EVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVAI---------LSD 487 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D TD G I +Q + S++ LN AKD +++ + Sbjct: 488 ILGDEDHLGDMDFKVAGTDEG-ITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQ 546 Query: 237 VIS 239 + Sbjct: 547 ALE 549 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 26/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R ++L ++K A GS LV +G + +L + +T EY + Sbjct: 12 RTLTLETGRLAKQASGSVLVTYGQSVVLV---TATAAREARASVDFLPLTIEYQERFYAV 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + +RE GR R+I R LR + Q+I + Sbjct: 69 GRIPGSFFRREI--GRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNENDPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G VA + GM+ G +++ + Sbjct: 127 LMAMIGASAAL-------------TVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSR 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T +V V+G A+ +D + A + + LI LQ++ Sbjct: 174 LDLIVAGTSKA-VVMVEGGADG--LPEDEVREGIFFAHEAMQPLIDLQEE 220 >gi|193700001|ref|XP_001942946.1| PREDICTED: exosome complex exonuclease MTR3-like [Acyrthosiphon pisum] Length = 279 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 18/185 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + R + + + A+GS ++ G T L+ + ++VP + K G + Sbjct: 40 VRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVFDPKEVPNKVEYAKTGELQ 99 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 E+ S R +R +++ + RAL + + +I I+ V++ Sbjct: 100 CEFKFATFSC--RQRRTYTR---DSEERQLCNELRRALEPAICRGEFANFEIHINVLVLE 154 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG AAIT A +AL D M D + A S G+ +VD Y Sbjct: 155 NDGSVLAAAITAAGLALMDGCIPMYDV-------------IVATSLGIYKNKILVDPTYD 201 Query: 181 EDSTI 185 E++ Sbjct: 202 EETLC 206 >gi|34496921|ref|NP_901136.1| polynucleotide phosphorylase/polyadenylase [Chromobacterium violaceum ATCC 12472] gi|81656248|sp|Q7NY10|PNP_CHRVO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|34102777|gb|AAQ59141.1| polyribonucleotide nucleotidyltransferase [Chromobacterium violaceum ATCC 12472] Length = 722 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R IS+ V GS L G+T L ATL K I + G T Sbjct: 324 RIDGRDTRTVRPISIRNNVLPRTHGSALFTRGETQALVVATLGTKQDEQIIDALAGEYTE 383 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RAL +V+ + + + Sbjct: 384 RFMLHYNFPPYSTGEAGRMGPPKRREIGHG----RLAKRALVAVLPPEDEFGYSMRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 440 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNRFAV---------LTDI 490 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G + +Q + +++ L AK+ ++ L K+ Sbjct: 491 LGDEDHLGDMDFKVAGTAAG-VTALQMDIKIQGITKEIMQVALEQAKEGRLHILGLMKEA 549 Query: 238 I 238 + Sbjct: 550 V 550 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 33/197 (16%) Query: 43 LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV 102 ++ + + T G +P G KRE G+Q + R+I R +R + Sbjct: 58 VKPGQDFFPLTVDYLERTYAAGKIP---GGFFKRE---GKQSEKEVLTSRLIDRPIRPLF 111 Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162 QI+ + + + A+ GA AL G + Sbjct: 112 PEGFYHDVQIVATVLSLNPEVDSDIPAMIGASAALA-------------ISGLPFAGPIG 158 Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT---------FSQ 213 A G G I++ E T +D T ++ V+ A+ F Sbjct: 159 AARVGYANGEYILNPTKTELQTSQMDLVVAGTSRA-VLMVESEAKELPEAVMLGAVVFGH 217 Query: 214 DHFFAMLNLAKDRIADL 230 + A A I +L Sbjct: 218 EQMQA----AIKAINEL 230 >gi|94269020|ref|ZP_01291349.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] gi|93451373|gb|EAT02233.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium MLMS-1] Length = 703 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 20/243 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ R+ +++R I+ GS L G+T +L +ATL +E+ + Sbjct: 322 RIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESLSGMNFK 381 Query: 58 WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G R R R + RA+++V+ + I + Sbjct: 382 PFMLHYNFPPYCVGEVRFLRG-----PSRRDIGHGALAERAIQAVLPDADSFPYTIRVVS 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + GA ++L D M+ + + + +G AI + D Sbjct: 437 EVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVAI---------LSD 487 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D TD G I +Q + S++ LN AKD +++ + Sbjct: 488 ILGDEDHLGDMDFKVAGTDEG-ITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQ 546 Query: 237 VIS 239 + Sbjct: 547 ALE 549 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 26/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R ++L ++K A GS LV +G + +L + +T EY + Sbjct: 12 RTLTLETGRLAKQASGSVLVTYGQSVVLV---TATAAREARASVDFLPLTIEYQERFYAV 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + +RE GR R+I R LR + Q+I + Sbjct: 69 GRIPGSFFRREI--GRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNENDPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G VA + GM+ G +++ + Sbjct: 127 LMAMIGASAAL-------------TVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSR 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T +V V+G A+ +D + A + + LI LQ++ Sbjct: 174 LDLIVAGTSKA-VVMVEGGADG--LPEDEVREGIFFAHEAMQPLIDLQEE 220 >gi|188586076|ref|YP_001917621.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius thermophilus JW/NM-WN-LF] gi|226702667|sp|B2A3A3|PNP_NATTJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|179350763|gb|ACB85033.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 718 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKHG 57 R GR + ++R ++ + GS L G T +L T A + ++ + + Sbjct: 322 RPDGRGQKEIRPVTCDVDLLPNTHGSGLFTRGQTQVLNVCTLGALGDVQILDGLDIEESK 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R + RAL+ ++ I + + Sbjct: 382 RYMHHYNFPPYSVGEAG---FMKG-PGRREIGHGALAERALKPMIPTEKDFPYTIRLVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++++G T ++ + ++L D +E + + + +G AI + D+ Sbjct: 438 VLESNGSTSMGSVCASSLSLMDAGVPIEKAVSGIAMGLIKEGDQLAI---------LSDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + + +++ L KD ++ + K Sbjct: 489 QGIEDFLGDMDFKVAGTEDG-ITALQMDIKISGTTREILKQALKQGKDGYLHILNIMKQT 547 Query: 238 ISNE 241 IS Sbjct: 548 ISEP 551 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 27/233 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +++L ++K A G+ V++G+T +L TAT ++ + + + G +P Sbjct: 13 QLTLETGELAKQANGAVKVQYGNTVVLVTATASKEPKDDLNFFPLTVDYEERLYAVGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE G+ ++ R+ R +R + I+ + + Sbjct: 73 ---GGFIKRE---GKPTEKATLTARLTDRPIRPLFPDGFRNPVHIVSTVLSVDQNCPPEI 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+I GA AL G +A++ G + +V D E + Sbjct: 127 ASIIGASAALS-------------ISDIPFDGPIASVKVGKVNDEIVVTPDVDEHEESQL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T I+ V+ AE +D + A + I +I +Q+ ++ Sbjct: 174 DLVVAGTKDA-IMMVE--AEANELPEDEMLEAIMKAHEEIKKIITMQEQLVEQ 223 >gi|121593373|ref|YP_985269.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. JS42] gi|187470958|sp|A1W4L8|PNP_ACISJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120605453|gb|ABM41193.1| 3' exoribonuclease [Acidovorax sp. JS42] Length = 727 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L +TL + + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 377 RFIFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVACLPSKDEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 + + +++ A G+ LV DT +L T + + + T G +P Sbjct: 18 VVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + ++I + + A Sbjct: 77 --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ + +D Sbjct: 132 AMIAVSAALSVSGI-------------PFNGPIGAARVGYVNGEYVLNPGQTARKSSQLD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 T++ ++ +E S++ + K I + +L +D Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDA 228 >gi|295698477|ref|YP_003603132.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia pediculicola USDA] gi|291157180|gb|ADD79625.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia pediculicola USDA] Length = 705 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR+ N++R+I V GS L G+T L TL + IR+ G Sbjct: 319 IRIDGRKLNEIRKIDCRVGVLSRTHGSSLFTRGETQTLVIVTLGNERDAQIRDEIVGEKL 378 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y LP S G R+ G ++ R + +V+ + S I + Sbjct: 379 DHFILHYNFLPYSVGEIGLVGVPKRREIGHG----NLVKRGMIAVMPNFSNFSYTIRVVS 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +VI+++G + A+ G +A+ D +K +A IS G++ Sbjct: 435 EVIESNGSSSMASACGTSLAMMDAGI-------------PIKSAIAGISIGLIKEKENFV 481 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D + + G I +Q + + L AK+ ++K Sbjct: 482 ILSDILGDEDHFGDMDFKVMGNEEG-ISALQMDLKINGIEDEILRFALFQAKEARCKILK 540 Query: 233 LQKDVISNE 241 K+ ISN Sbjct: 541 KMKNAISNP 549 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 26/215 (12%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71 + +++ + S ++ G T +L + E+ + + + Y S G Sbjct: 22 IETGSLARQSTSSLIIHMGGTSVLISVV--EQTEEKKQESNFFPLIVNYQERSYSIGRIP 79 Query: 72 -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 + +RE GR G R+I R+LR QII + +I Sbjct: 80 GSFFRRE---GRSGENEILTSRLIDRSLRPAFPEQFRNEIQIIATVVSVNPKINPDILSI 136 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL G + ++ G + G I++ Y + ++D Sbjct: 137 IGASAALS-------------ISHIPFHGPIGSVRIGYIGGRYILNPSYEDLKESELDLI 183 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 T+ I+ V+ A + +D ++ +K Sbjct: 184 VSGTED-KILMVE--ARSSLLKEDIILEAIDFSKK 215 >gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa] gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa] Length = 243 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 85/256 (33%), Gaps = 40/256 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +S R V A GS GDT +L + N + I Sbjct: 5 RDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEV 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + +G+ G +E + ++ R L+S+ L+ + I V+ Sbjct: 65 IWK-------------PKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVND 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG AI A AL D M+ + VA C GY I+D E Sbjct: 112 DGALLVCAINAACAALVDAGIPMKHLA------------VAICCCLAEGGYVILDPTKLE 159 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAE---------------RATFSQDHFFAMLNLAKDR 226 + + V +S V +GS+ S + + L + Sbjct: 160 EQKMRGFTYLVFPNSVVSVLPEGSSHVEGEPMEHGIITSVTHGVMSVEEYLKCLERGRAA 219 Query: 227 IADLIKLQKDVISNEV 242 L + + +++ Sbjct: 220 STKLSDFLRRSLQSQL 235 >gi|222110082|ref|YP_002552346.1| polynucleotide phosphorylase/polyadenylase [Acidovorax ebreus TPSY] gi|254782718|sp|B9MEL0|PNP_DIAST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221729526|gb|ACM32346.1| polynucleotide phosphorylase, phosphorolytic RNA-binding [Acidovorax ebreus TPSY] Length = 727 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L +TL + + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 377 RFIFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVACLPSKDEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 + + +++ A G+ LV DT +L T + + + T G +P Sbjct: 18 VVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + ++I + + A Sbjct: 77 --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ + +D Sbjct: 132 AMIAVSAALSVSGI-------------PFNGPIGAARVGYVNGEYVLNPGQTARKSSQLD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 T++ ++ +E S++ + K I + +L +D Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDA 228 >gi|94969022|ref|YP_591070.1| polynucleotide phosphorylase/polyadenylase [Candidatus Koribacter versatilis Ellin345] gi|123381514|sp|Q1IQ54|PNP_ACIBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|94551072|gb|ABF40996.1| 3' exoribonuclease [Candidatus Koribacter versatilis Ellin345] Length = 815 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R GR +Q+R+I + V GS + G+T L T TL M Sbjct: 318 RPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTGDDMQRMEGFEGEAKK 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R+ G + RAL +V+ + + D Sbjct: 378 RFMLHYNFPPFSVGEVAFLRGAGRREIGHG----ALAERALSAVLPSEDKWPYAMRVVSD 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A+I G ++L D ++ + V +G AI + D+ Sbjct: 434 ILESNGSSSMASICGGSLSLMDAGVPLKAPVAGIAMGLVKEGDDYAI---------LTDI 484 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + + L A+ ++ +V Sbjct: 485 AGAEDHYGDMDFKVAGTTQG-ITALQMDIKIGGITAQIMREALEQARRGRLFILDKMNEV 543 Query: 238 ISNE 241 I + Sbjct: 544 IQSP 547 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 78/225 (34%), Gaps = 27/225 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 +S K A GS +V+ G + +L TA E + + + T G P Sbjct: 18 LSFETGKLAKQAHGSAIVRSGQSVVLATACANADPREGIDFFPLTVDYREYTYAGGRFP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R I R +R + Q+I ++ Sbjct: 77 --GGFIKRE---GRPSEKEILTSRQIDRPIRPLFPEGFRCETQVIAMVLSADSENDPDVC 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 I GA AL G + A+ G++ G IV+ Y E ++ Sbjct: 132 GINGASAALA-------------VSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLN 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 V T G IV ++ A A +++ + + I + + Sbjct: 179 IMVVGTAEG-IVMIESGAHEA--TEEEVVSAIEFGHGEIKKICAV 220 >gi|328850748|gb|EGF99909.1| hypothetical protein MELLADRAFT_68249 [Melampsora larici-populina 98AG31] Length = 271 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 93/258 (36%), Gaps = 46/258 (17%) Query: 1 MRLSGRQENQMREISLTRRVSKYA----EGSCLVKFGDTHLLTTATLEEKVP-----MWI 51 +R R+ ++R++ + K + +GS +V G T + ++ + +++ Sbjct: 12 LRQDNRRPYELRQLDFK--ILKSSPNSLDGSSIVSHGLTKVTSSVSGPKEITSSSSSNHK 69 Query: 52 RN-----TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106 N G I M S +R K + R ++ I SV+ L Sbjct: 70 SNLKSHTNNVGSIQVYVNMTNFSQSDRKK----LSKVDKRLMDLSFSIQNTFESVIMLKL 125 Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166 I I +V+Q DGG AAI ++L ++D ++ AIS Sbjct: 126 YPRSLIEIFIEVLQEDGGLLQAAINATSLSLIASGISIQD-------------YILAISI 172 Query: 167 GML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 G L P++D+ E + + S I +Q + + D F + + Sbjct: 173 GSLSNPNLPLLDVTNLEQLDLPSLTIASLPRSSKISLIQV---ESRLNIDEFEKLCRIGL 229 Query: 225 DRIADLIKLQKDVISNEV 242 + +V+ +E+ Sbjct: 230 EAC--------EVLKDEL 239 >gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia floridanus] gi|81666682|sp|Q7VQM0|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome [Candidatus Blochmannia floridanus] Length = 697 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R GR + +REI ++ + GS L GDT L TATL + + + Sbjct: 316 VRFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVTATLGTERDAQNLDELTGDRV 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG A R+ G R+ R + +V+ S + + Sbjct: 376 DRFLLHYNFPPYCTGEIGIVGAPRRREIGHG----RLAKRGMLAVMPNSNEFPYTVRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V +++G + A+I GA +AL D +K VA ++ G++ Sbjct: 432 EVTESNGSSSMASICGASLALMDAGV-------------PIKESVAGVAMGLIKENSNFI 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I +Q + + D A+ + ++ Sbjct: 479 ILSDIISDEDHIGDMDFKVSGTRTG-ITALQMDIKIKGITYDIIEVSFKKARCALLRILD 537 Query: 233 LQKDVIS 239 + VI Sbjct: 538 IMDQVIK 544 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 30/226 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA--TLEEKVP--MWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++ A + +V GDT +L T + +EK+ + + T G P G + Sbjct: 23 IARQANAAVMVSIGDTTVLVTVVSSNQEKIDQGFFPLVVHYQERTYAAGKFP---GGFFR 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR R+I R +R + L QII + A+ G Sbjct: 80 RE---GRPSESEILTSRLIDRPIRPLFPKGFLNDIQIIATVVSVNPQIHPDIVAMIGVSA 136 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL G + A G + I++ E S +D TD Sbjct: 137 ALS-------------LSDIPFFGPIGAARVGYIKDQYILNPTTIELSNSKLDLVVAGTD 183 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 S +I+ V+ +A S+ + ++ I ++ +L K Sbjct: 184 S-NILMVESAA--CVLSEQEMLNAIVFGHEQQQTVIQNINQLVKKA 226 >gi|62185343|ref|YP_220128.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila abortus S26/3] gi|81312506|sp|Q5L5B4|PNP_CHLAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|62148410|emb|CAH64177.1| polyribonucleotide nucleotidyltransferase [Chlamydophila abortus S26/3] Length = 694 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKH 56 +R GR +R IS+ GSCL G+T + TL E + + Sbjct: 313 LRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEGL 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL + I I+ Sbjct: 373 AKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHTLPDPMKFPYTIRIES 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A++ G +AL D ++ + +L+ I + D Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILEDDHVTI---------LSD 479 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D G I Q + + D A L AK+ D+++ K Sbjct: 480 ISGLEDHLGDMDFKVAGNTEG-ITAFQMDIKVEGITPDIMRAALAQAKEGRQDILETMKQ 538 Query: 237 VIS 239 ++ Sbjct: 539 ALA 541 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 30/227 (13%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ L + +T + + A LEE V + ++ + ++ G Sbjct: 18 FETGKIARQANGAVLARMQETWVFSSVCAANLEEAVDFLPLRVDYQE---KFSSIGKTLG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR R R+I R++R + + QI+ DG T A Sbjct: 75 GFIKRE---GRPTEREILTSRLIDRSMRPSLPNRLMQDIQILSYVW--SYDGVTLPDPIA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I G AL VA + G + +V+ E ++ Sbjct: 130 ICGVSAALA-------------ISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMEL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T++ I+ ++G F+++ + I + K KD Sbjct: 177 VLAGTENA-ILMIEG--HCDFFTEEQVIEAIEFGHKHIVTICKALKD 220 >gi|154148101|ref|YP_001405843.1| polynucleotide phosphorylase/polyadenylase [Campylobacter hominis ATCC BAA-381] gi|187610248|sp|A7I002|PNP_CAMHC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|153804110|gb|ABS51117.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter hominis ATCC BAA-381] Length = 711 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 87/242 (35%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R GR +++R IS+ + A GSCL G T L TL + + ++ Sbjct: 323 RADGRALDEIRPISIETNILPNAHGSCLFTRGQTQALVVTTLGGETDAQVSDSLTSNTPI 382 Query: 58 --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +Y G ++ R+ G + RAL V L+ + I Sbjct: 383 SERFMFQYNFPGFCVGEASPLKSPGRRELGHG----NLAKRALTPSVPLN--NPQVIRTV 436 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A++ G ++L + + + AI + Sbjct: 437 SEILESNGSSSMASVCGGSLSLRAAGVSTLKLVAGVAMGLIFEDDKHAI---------LT 487 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I +Q + S + LN AKD ++ L + Sbjct: 488 DIMGLEDHDGDMDFKVAGTREG-ITALQMDIKLGGISLEILREALNQAKDGRNYILNLME 546 Query: 236 DV 237 Sbjct: 547 VA 548 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 42/225 (18%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+CL+K +T +L T E +T +Y G +P G Sbjct: 19 VAKQAAGACLMKVKNTVVLATVARENTQ----VEEDFLPLTVQYIEKQYAAGRIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 +KRE + G R+I R+LR + QI++ V+ AD + + Sbjct: 72 YIKRET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVF--VLSADPEIDLQVVGL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ M K V + G + +++ E +D Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRVGYINDSFVINPTNSELQNSALDLY 173 Query: 191 FVMTDSGHI-VEV----QGSAERA---TFSQDHFFAMLNLAKDRI 227 + +E+ + E FS+D ++ A I Sbjct: 174 VAGVKDEMLMIEMRSLPNMNGENQNMNEFSEDKMVEAIDFASKAI 218 >gi|21672636|ref|NP_660703.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090941|sp|Q8K9H5|PNP_BUCAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21623270|gb|AAM67914.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 707 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L + TL + K Sbjct: 315 RIDGREKDMIRALDIRTGVLPRTHGSSLFTRGETQSLVSVTLGTSRDAQNLDELLGDKTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R+L +V+ I I + Sbjct: 375 NFLFHYNFPPYSVGEIGIVGSPKRREIGHG----RLAKRSLLAVMPKLDDFPYTIRIVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA IS G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGISMGLVKEGDKYVL 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + + + LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVSGTEEG-ITALQMDIKIEGITNEIMRIALNKAKSARLHILNV 536 Query: 234 QKDVISNE 241 K +S Sbjct: 537 MKQALSKP 544 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68 I+L + + A + + DT + T E+ + + T G +P Sbjct: 16 ITLETGIMARQATAAVMASMDDTAVFVTVVGEKTTNSSQKFFPLTVNYQERTYAVGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR R+I R +R + QII + Sbjct: 75 --GGFFRRE---GRPSENEILTARLIDRPIRPLFPKGFCNEIQIIATVVSVNPQINPDII 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 +I GA AL G + A G + +++ + + +D Sbjct: 130 SIIGASAALSLSGI-------------PFYGPIGAARVGFVNNQYVLNPTIDDMKSSFLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T + ++ AE S+D + Q+ V+ N + Sbjct: 177 LVVSGTQNAVLMV---EAESKVLSEDKILGAIMFGHQ--------QQQVVINNI 219 >gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides DSM 12442] gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock3-17] gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock1-4] gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock1-4] gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides Rock3-17] gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides DSM 12442] Length = 717 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEQDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + A S++ L AK ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIAGLSREILEEALQQAKVGRMHILD 536 Query: 233 LQKDVISNE 241 I+ Sbjct: 537 HMLSAIAEP 545 Score = 92.8 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G I++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDVPFEGPIAGATVGRIDGEFIINPTVEQQEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I L+ Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EEIMLEAIMFGHDEIKRLVAFQEEIV 223 >gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666] gi|123355467|sp|Q127W8|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666] Length = 707 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L TL + + Sbjct: 317 RIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIAVLPTKEEFPYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEENRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T + I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGT-TFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 77/234 (32%), Gaps = 31/234 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67 ++++ V++ A G+ +V T +L T + + + T G +P Sbjct: 17 KVTMETGEVARQASGAVVVDMDGTVVLATVVAKTDAKPGQDFFPLTVDYLEKTYAAGRIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ KRE GR R+I R +R + Q++I + + Sbjct: 77 ---GSFFKRE---GRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSLNPEVEGDI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ + AL G + A + G +++ + + Sbjct: 131 PALIASSAALSISGI-------------PFNGPIGAARVAYVDGQYVLNPGKTQLKDSKM 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 D T++ ++ +E S++ + A I + +L +D Sbjct: 178 DLVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHEQANIAINAIHELVRDA 228 >gi|260495072|ref|ZP_05815201.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_33] gi|260197515|gb|EEW95033.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_33] Length = 703 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RALR V+ I + + Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSE 443 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 444 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 490 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A ++++L Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILEL 549 Query: 234 QKDVISNE 241 + IS Sbjct: 550 MNNTISKP 557 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 33/233 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + ++ +S+ + G+ ++++GDT LL+TA + + +T +Y ST Sbjct: 18 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTA---NRSKEARKGADFFPLTVDYIEKFYST 74 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 G KRE GR + + R+I R +R + + + I V+ D Sbjct: 75 GKFPGGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINT 129 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 I G+ +AL G VA ++ G G I++ E Sbjct: 130 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPKELEE 176 Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D + T ++VE A ++ + A + I + + Q++ Sbjct: 177 SELDLSVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 225 >gi|320537764|ref|ZP_08037687.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis F0421] gi|320145387|gb|EFW37080.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis F0421] Length = 700 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 90/245 (36%), Gaps = 19/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR ++R I+ V GS + G+T L TL +E+V I + Sbjct: 313 LRVDGRNTEEIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQVYDDIEGDRR 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G V R R+ G + R+L ++ + + Sbjct: 373 ENFILHYNFPPFSVGE-VGRMGTGRREIGHGY----LAHRSLSPMIPSREKFPYTVRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G ++L M+ + + G AI + D Sbjct: 428 EILESNGSSSMATVCGGTLSLLHAGVPMKSPVAGIAMGLITDGDRYAI---------LSD 478 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T++G I Q + A S + L AK ++ + Sbjct: 479 ILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIAGVSSEIMKNALAQAKRGRMHILGIMNQ 537 Query: 237 VISNE 241 IS Sbjct: 538 TISKP 542 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 26/219 (11%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGMLPRSTGNRVKRE 77 K A G+ +FG + +L T ++ + + G +P G +KRE Sbjct: 23 KQANGAIFAQFGGSAVLATVCASDQSQEGLDYVPLTVDYNEKYYAAGKIP---GGFIKRE 79 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 GR + + R+I R +R + G D +I ++ + Sbjct: 80 ---GRPKDKEILVSRLIDRPMRPLF-EKDFGR-----DIQII-------PTCVSSDMINP 123 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 D L + + G VAA + G +++ + + +++ T G Sbjct: 124 PDILAVIASSAAVVISDIPFNGPVAAARIAYVNGEYVINPTFKQIDRAEMEIVVAGTKEG 183 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 I V+G A S++ L A + I + LQ+ Sbjct: 184 -ITMVEGGAHE--VSEEVMLTALEKAHEFIKIICDLQEQ 219 >gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas vaginalis G3] gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas vaginalis G3] Length = 241 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 77/243 (31%), Gaps = 30/243 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR N+MR + GS K G T ++ I Sbjct: 10 LRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPRD---NRSGDNAAEIR 66 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 + + A R +E + ++ R + +I+I VIQ Sbjct: 67 VTFEYADFA----KVPHASDTSMTRRGRESEVIMKRTFEEAIKRELFPHSKILIAITVIQ 122 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 DG ++AAI A +AL D M D V +++ + +D Sbjct: 123 DDGSCQSAAINAATLALIDAGIPMFD-------------FVVSMTVALYDDKCFLDAGRA 169 Query: 181 EDSTIDVDANF----VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E + + + I+ + +A ++ A D +L + +D Sbjct: 170 E---SNARFPVLEVSIFPSTSEILSMNLTARIEP---QASKNLMAAAIDGCKELHAIMQD 223 Query: 237 VIS 239 V+ Sbjct: 224 VVR 226 >gi|300676790|gb|ADK26666.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia albicollis] gi|300676888|gb|ADK26760.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia albicollis] Length = 765 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPM-----WIRN 53 R GR +R+I + K GS L + G T +L T +LE V + Sbjct: 340 RCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSLESSVKSDVISTAVSG 399 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + RAL+ V+ I Sbjct: 400 IKDKNFMLHYEFPPYATNEIGKVTVMNRRELGHG----ALAERALKPVIPQDF--PFTIR 453 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + + V K + G + Y Sbjct: 454 VTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTK---CSQGKGDIEDYR 510 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 511 LLTDILGIEDYYGDMDFKMAGTNKG-ITALQVDLKLPGIPIKIVVEAIQQATAAKREILQ 569 Query: 233 LQKDVISNE 241 + ++ Sbjct: 570 IMNQTLAKP 578 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 90/241 (37%), Gaps = 36/241 (14%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTT-ATLEEKVPMWIRNTKHGWITAE 62 R R++ L+ K+A+GS +V+ GDT ++ T + + P + + Sbjct: 29 NRFFLSFRKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQFMP-----LVVD 83 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y + G R+ + G +EI R+I R++R + QI+ C+++ Sbjct: 84 YRQKAAAAG-RIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLA 140 Query: 121 ADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 DG AI GA AL G + A+ G++ G +++ Sbjct: 141 VDGVNDPDILAINGASAALA-------------LSDIPWNGPIGAVRVGLVDGETVINPT 187 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-------RIADLI 231 E ++ ++ +V ++ +AE Q F + + I L+ Sbjct: 188 RKEMASSTLNLVVAGAAQNQVVMLEATAENIL--QQDFCHAIKVGVKQTQHIIQGIQQLV 245 Query: 232 K 232 K Sbjct: 246 K 246 >gi|225181391|ref|ZP_03734835.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter alkaliphilus AHT 1] gi|225167972|gb|EEG76779.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter alkaliphilus AHT 1] Length = 721 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPM--WIRNTKH 56 +R GR+ +++R ++ + GS L G T +L T +V + + Sbjct: 310 LRPDGRKSDEIRPVTSEVGILPRTHGSGLFTRGQTQVLNVCTLGAPGEVQRLDGLGLEES 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G S R G + +AL V+ I + Sbjct: 370 KRYMHHYNFPPYSVGEAGFMRGASRRDIGHG----ALAEKALVPVLPSEEDFPYTIRLVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + ++ G+ +++ D ++ + + +++G AI + D Sbjct: 426 EVVESNGSSSMGSVCGSTLSMMDAGVPLKKPVSGVAMGLIVEGDDVAI---------LSD 476 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + S++ L AKD ++ + Sbjct: 477 IQGMEDFLGDMDFKVAGTPEG-ITALQMDIKIKGLSREILTKALQQAKDGYMHIMNKMTE 535 Query: 237 VISNE 241 VI Sbjct: 536 VIPEP 540 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 93/234 (39%), Gaps = 27/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 RE+S+ ++K A GS ++++GDT +L+TAT E V + + G + Sbjct: 11 RELSIETGRIAKQASGSVVLRYGDTVVLSTATASAEPREGVDFFPMTVDYEERLYAVGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+ R R + + I+ + D Sbjct: 71 P---GGFIKRE---GRPTEKAILSARLTDRPCRPLFPKGFRNAVHIVTTVLSVDQDNPPE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 +I GA AL + G ++A+ G + G P+++ + + Sbjct: 125 VLSIVGASAALS-------------ISNIPFAGPLSAVVVGWIDGKPVINPNQEQAEQSK 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T G I+ V+ A ++D + D +++ LQ+ +++ Sbjct: 172 LHLVVASTKDG-IMMVEAGAHE--LTEDEVLEAIMAGDDANKEIVALQEQMVAE 222 >gi|237743308|ref|ZP_04573789.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1] gi|229433087|gb|EEO43299.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1] Length = 703 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RALR V+ I + + Sbjct: 388 KFYLHYNFPPYSVGEVGRMSSPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSE 443 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 444 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 490 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A ++++L Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILEL 549 Query: 234 QKDVISNE 241 + IS Sbjct: 550 MNNTISKP 557 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 33/233 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + ++ +S+ + G+ ++++GDT LL+TA + + +T +Y ST Sbjct: 18 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTA---NRSKDARKGADFFPLTVDYIEKFYST 74 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 G KRE GR + + R+I R +R + + + I V+ D Sbjct: 75 GKFPGGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINT 129 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 I G+ +AL G VA ++ G G I++ E Sbjct: 130 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPKELEE 176 Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D + T ++VE A ++ + A + I + + Q++ Sbjct: 177 SELDLSVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 225 >gi|302667165|ref|XP_003025173.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517] gi|291189263|gb|EFE44562.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517] Length = 302 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 13/208 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59 +RL GR+ N++R + + + GS + G+T +L T + I Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + +R K+ A G R + E+ ++ A + + I + Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-----CGMLCG- 171 V+ +DG A + +AL D M + + A++ G + Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGEINES 193 Query: 172 -YPIVDLDYGED---STIDVDANFVMTD 195 P++D+ E+ + V M D Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPD 221 >gi|203288233|ref|YP_002223248.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1] gi|226702624|sp|B5RQE3|PNP_BORRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|201085453|gb|ACH95027.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1] Length = 717 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR Q+R+I + K GS L G+T L +++E+V I K Sbjct: 315 LRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSIDEQVMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + R+L +++ I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + ++L +K VA I+ G++ Sbjct: 430 EVLESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLISNDDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + + ++ L A+ ++ Sbjct: 477 ILSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMRDALEQARIGRMHILS 535 Query: 233 LQKDVISN 240 + VIS+ Sbjct: 536 IMDSVISS 543 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 84/230 (36%), Gaps = 31/230 (13%) Query: 16 LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70 L + K A G+ L +G + +L T ++ E + + ++ G +P Sbjct: 16 LETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYNEKYYAAGKIP--- 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128 G +KRE G+ + + R+I R +R + D R+I + + D Sbjct: 73 GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + A+ A+ F G +AA+ L IV+ + E +D Sbjct: 128 GMNAAFTAV-------------FLSDIPFNGPIAAVRIAYLNDEFIVNPSFDEIQDSVLD 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 V I V+G A S++ ++ A I + LQK+ I Sbjct: 175 I-VVAGSLDGITMVEGGANE--VSEEILLDAIDKAYTYIKQICDLQKEFI 221 >gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|187470935|sp|A7GRD7|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH 391-98] Length = 710 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKSDEIRPLASEVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILD 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.5 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEAKDVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G I++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRIDGEFIINPTVEQQEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + + I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHEEIKRLIAFQEEIV 223 >gi|76155868|gb|AAX27138.2| SJCHGC06185 protein [Schistosoma japonicum] Length = 251 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 18/202 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-KVPMWIRNTKHGWIT 60 R+ GR+ N++R + S ++G + G+T ++ + N I Sbjct: 3 RVDGRRPNELRRVHCQFG-SGNSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATII 61 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ P ++ + +R+ S + + I VV QI I +VIQ Sbjct: 62 CQFTKPPFASTSGERRKVASN--DRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQ 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD-Y 179 +DG A+ +AL D M V+A + G+ DL + Sbjct: 120 SDGSEFACAVNATTLALTDAGIEMHYL-------------VSAATVGLWGSRVFADLCRF 166 Query: 180 GEDSTIDVDANFVMTDSGHIVE 201 E+ + + D + E Sbjct: 167 EENPRLSQLTVVCLPDIHQLSE 188 >gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] gi|254040461|gb|ACT57257.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter asiaticus str. psy62] Length = 699 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR +R+IS + + GS L GDT + TL + + T+ Sbjct: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y LP +TG + A S R+ G R+ RA+ V+ +A + I Sbjct: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ ++DG + A + G+ +AL D + VA I+ G++ Sbjct: 428 EITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFI 474 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED +D TDSG I +Q + S++ L AK ++ Sbjct: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533 Query: 233 LQKDVISN 240 V+S Sbjct: 534 EMSKVLSE 541 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 34/230 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ ++G+ L +G+T +L T +L++ + + T G + Sbjct: 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G ++RE+ R I RMI R++R + Q+II+ V+Q D Sbjct: 74 P---GGYLRRES---RPTENEILISRMIDRSIRPLFSKCYKNETQVIIN--VMQHDLESS 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL +G V + G +++ ED Sbjct: 126 PHVVSMVAASAAL-------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ- 171 Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T + VE+ E S+D + + +I+ Sbjct: 172 GSLDLFVSGTQDAVLMVEL----EANQLSEDVVLDAIIFGHNECKPVIEA 217 >gi|312143658|ref|YP_003995104.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp. 'sapolanicus'] gi|311904309|gb|ADQ14750.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp. 'sapolanicus'] Length = 696 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 99/249 (39%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R I V + GS + G+T L+ A+ +E++ + + Sbjct: 310 IRPDGREHDEIRPIWAEVGVVPRSHGSGVFTRGETQALSVLTLGASSDEQILFGLGEKET 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y G + R+ G + +AL V+ I I Sbjct: 370 KRYMHHYNFPSFCVGETSPMRSPGRREIGHGT----LGEKALLPVIPEKDDFPYTIRIVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPI 174 +V++++G + A+I G+ ++L D +K V+ I+ G++ + Sbjct: 426 EVLESNGSSSQASICGSTLSLMDAGV-------------PIKAPVSGIAMGLMKKDDEIV 472 Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 V D+ ED D+D T++G + +Q + S+D LN AK +++ Sbjct: 473 VLSDIQGFEDFHGDMDFKVAGTENG-VTALQMDMKLKGLSKDVLEEALNKAKKGRMHIME 531 Query: 233 LQKDVISNE 241 +VI+ Sbjct: 532 KMLEVIAEP 540 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 86/228 (37%), Gaps = 28/228 (12%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 + + K A GS +V+ GD+ +L TAT++E P + + Y + G Sbjct: 12 DFHIETGKLAKQANGSVMVRSGDSQVLVTATMDEPRP----GMNYFPLMVNYEERVYAIG 67 Query: 72 NRV----KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 +RE GR + R+I R++R + Q++ + D Sbjct: 68 KIPGGVLRRE---GRPRDEATLAARVIDRSIRPLFPDGYRKDVQVVATILSVDDDHDPEM 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA +AL G + + G++ G I++ + E ++ Sbjct: 125 LALNGASIAL-------------TISDIPFDGPIGGVKVGLVDGEIIINPNEEERENSEL 171 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D V I+ V+ SA + ++LA I +IK+QK Sbjct: 172 DL-VVAGSKDAIMMVEASANE--VEEAVILEAMDLAHQEIQKMIKIQK 216 >gi|217976462|ref|YP_002360609.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris BL2] gi|254782729|sp|B8EP09|PNP_METSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217501838|gb|ACK49247.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris BL2] Length = 714 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 18/242 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR +R I + A GS L G+T L ATL ++ G Sbjct: 315 VRIDGRDLKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+R ++ +A I I Sbjct: 375 ERFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVRPMLPTAAEFPYTIRIVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A + G+ +AL D ++ + + +L+G A+ + D Sbjct: 431 EITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G + +Q + A +++ L+ AK ++ Sbjct: 482 ILGDEDHLGDMDFKVAGTEEG-VTSLQMDIKVAGITEEIMKVALDQAKGGRLHILGEMSK 540 Query: 237 VI 238 + Sbjct: 541 AL 542 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 31/235 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R+++L +++ A+G+ L +G+T +L T T + + + + G + Sbjct: 14 RKLTLETGRIARQADGAVLATYGETTVLATVVSARTPKPGIDFFPLTVNYQEKAFAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+++ + Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYRNDTQVVVTVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ AL G V G + G ++ E Sbjct: 128 ILALVATSAALTISGI-------------PFMGPVGGARVGYINGALKLNPTVDELKESA 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 +D T ++ +E S+ + I +I+L + Sbjct: 175 LDLVVAGTGDAVLMV---ESEAKELSETLMLEAVMTGHRGFQPVIDAIIRLAEKA 226 >gi|203284701|ref|YP_002222441.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly] gi|226702622|sp|B5RMZ9|PNP_BORDL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|201084144|gb|ACH93735.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly] Length = 717 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR Q+R+I + K GS L G+T L +++E+V I K Sbjct: 315 LRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSIDEQVMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + R+L +++ I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + ++L +K VA I+ G++ Sbjct: 430 EVLESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLISNDDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + + ++ L A+ ++ Sbjct: 477 ILSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMRDALEQARIGRMHILS 535 Query: 233 LQKDVISN 240 + VIS+ Sbjct: 536 IMDSVISS 543 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 84/230 (36%), Gaps = 31/230 (13%) Query: 16 LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70 L + K A G+ L +G + +L T ++ E + + ++ G +P Sbjct: 16 LETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYNEKYYAAGKIP--- 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128 G +KRE G+ + + R+I R +R + D R+I + + D Sbjct: 73 GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + A+ A+ F G +AA+ L IV+ + E +D Sbjct: 128 GMNAAFTAV-------------FLSDIPFNGPIAAVRIAYLNDEFIVNPSFDEIQDSVLD 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 V I V+G A S++ ++ A I + LQK+ I Sbjct: 175 I-VVAGSLDGITMVEGGANE--VSEEILLDAIDKAYAYIKQICDLQKEFI 221 >gi|289550934|ref|YP_003471838.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01] gi|289180466|gb|ADC87711.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus lugdunensis HKU09-01] Length = 698 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRLLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQIIDGLGPEQE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID 115 Y S G A R+ G + RALR ++ D S I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRHIIPDTSKFP-YTIRIV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 433 SEVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSY 479 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + +++ L A+ Sbjct: 480 TILTDIQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARKG 533 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TA + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + D I L++ Q+ ++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHDEIKRLVEFQQQIV 223 >gi|269797830|ref|YP_003311730.1| 3' exoribonuclease [Veillonella parvula DSM 2008] gi|269094459|gb|ACZ24450.1| 3' exoribonuclease [Veillonella parvula DSM 2008] Length = 689 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 93/250 (37%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55 +R GRQ +++R IS V GS L G T +L T+ I T+ Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVITVAPLSEKQTIDGLGVETE 368 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y S G R+ G + RAL V+ + + Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEDFPYALRLV 423 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G + +Q + + S++ L A ++ Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIM 529 Query: 232 KLQKDVISNE 241 + D I+ Sbjct: 530 GIMLDTIAEP 539 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 28/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ +V +GDT +L TAT ++ + + + G LP Sbjct: 11 RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KREA R + R+I R +R + + ++ + D Sbjct: 71 ---GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + GA AL G +A + G + G +V+ + Sbjct: 125 CGMIGASAALS-------------ISDVPWNGPIAGVRMGRINGEFVVNPTKA--QLEET 169 Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D N V+ I+ V+G AE +D ++ A + I ++ Q+D+ + Sbjct: 170 DLNIVVAGTKDAILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQEDMTAK 221 >gi|314936565|ref|ZP_07843912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis subsp. hominis C80] gi|313655184|gb|EFS18929.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis subsp. hominis C80] Length = 698 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RALR ++ + I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTTEFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + +++ L A+ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQG 533 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TA + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D+ ++VE A + ++ + + I L+ Q++V+ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIKRLVAFQEEVVE 224 >gi|228475082|ref|ZP_04059810.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis SK119] gi|228271067|gb|EEK12455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis SK119] Length = 698 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RALR ++ + I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTTEFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + +++ L A+ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQG 533 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TA + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D+ ++VE A + ++ + + I L+ Q++V+ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIKRLVAFQEEVVE 224 >gi|323142160|ref|ZP_08076997.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium sp. YIT 12067] gi|322413352|gb|EFY04234.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium sp. YIT 12067] Length = 690 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH---LLTTATLEEKVPM-WIRNTKH 56 +R GRQ +++R +S + GS L G T +L A L E + + + Sbjct: 305 IRPDGRQLDEVRPVSCEVGLLARPHGSSLFTRGQTQILNVLALAPLREAQILDGLGAEET 364 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G + RALR V+ I + Sbjct: 365 KRYIHHYNFPPYSVGETKPLRSPGRREIGHG----ALAERALRPVIPSEEDFPYAIRLVS 420 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + ++ + ++L D +K VA ++ G++ Sbjct: 421 EVLESNGSSSMGSVCASTLSLMDAGV-------------PIKAPVAGVAMGLVKDGEYFT 467 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T+ G I +Q + ++D F L AK ++ Sbjct: 468 ILTDIQGLEDALGDMDFKVAGTEKG-ITAIQMDIKIDGINKDIFTQALAQAKRGREFIMG 526 Query: 233 LQKDVISNE 241 + IS Sbjct: 527 KMMECISEP 535 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 27/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +++ ++K A G+ LV++GDT ++ T E V + G + Sbjct: 6 RTLTIEAGKIAKQANGAVLVRYGDTAVVVAVTGTKTPREGVDFFPLTVDFEEKMYAVGKI 65 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + QI+ + D Sbjct: 66 P---GGFIKRE---GRPSEQAILTSRLIDRPIRPMFPEGYHNDVQIVATAVSVDPDNAPD 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL +G +A + G++ G I++ + Sbjct: 120 MPAMIGASCALS-------------ISDIPFEGPIAGVRVGLIDGEFIINPTVEQAKISQ 166 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ T I+ V+ A S++ + I L++ Q+ +++ Sbjct: 167 LNLAVAGTKDA-ILMVEAGANE--VSEETMLDAIWFGHGVIKQLVEFQEKIVAE 217 >gi|57242200|ref|ZP_00370139.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter upsaliensis RM3195] gi|57016880|gb|EAL53662.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter upsaliensis RM3195] Length = 717 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 89/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R I + + A GSCL G T L ATL + + +N Sbjct: 339 RADGRALNEVRAIEIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMVDLLSEKNPI 398 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G ++ RAL VD + + + Sbjct: 399 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLVKRALYPSVDEN--YPYVVRLV 452 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + VL+G AI + Sbjct: 453 SEILESNGSSSMATVCGGSLALRAAGVSSIKLVAGVAMGLVLEGDEYAI---------LT 503 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I +Q + ++ L A++ ++ L + Sbjct: 504 DIMGLEDHDGDMDFKVAGTKDG-ITALQMDIKLGGIDENILKNALYQAREARLHILDLME 562 Query: 236 DV 237 + Sbjct: 563 EA 564 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 82/241 (34%), Gaps = 41/241 (17%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75 V+K A GS L++ G + +L T E+K +T +Y + G +K Sbjct: 19 VAKQAAGSVLMRVGKSVVLATVAREDKQ----VEEDFLPLTVQYIEKAYAVGRIPGGYIK 74 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE + G R+I R+LR + QI++ + + ++ A V Sbjct: 75 RET---KPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADDEVDLQVMSLNAASV 131 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL+ +K V + + +++ + +D +V Sbjct: 132 ALYLSGI-------------PIKAPVCGVRIARINDEFVLNPSNSKLKESTLDL-YVAGV 177 Query: 196 SGHIVEVQGSA-----ERATFSQDHFFAML-----------NLAKDRIADLIKLQKDVIS 239 ++ ++ A E + F L L++D I + + K I Sbjct: 178 KDELLMIEMRALPSESEGEAMVETSFAEALAGTSIYEQVMNELSEDEILQALSVAKKAIL 237 Query: 240 N 240 N Sbjct: 238 N 238 >gi|254458763|ref|ZP_05072187.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales bacterium GD 1] gi|207084529|gb|EDZ61817.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales bacterium GD 1] Length = 727 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG- 57 +R GR ++R IS++ V A SCL G+T L T + M+ T G Sbjct: 346 VRADGRALTEVRPISISTNVLPKAHSSCLFTRGETQALVVLTMGGPKDAQMFESLTDAGT 405 Query: 58 ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G R+ G + RAL +VDL + + + Sbjct: 406 QNENFMVHYNFPGFSVGEASPIMGTKRRELGHG----NLAKRALEPIVDLD---GQTVRL 458 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A + G ++AL D + V G AI + Sbjct: 459 VSEILESNGSSSMATVCGGYMALRAADIDTSDTVAGIAMGMVSDGDKYAI---------L 509 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D + G I +Q + S D L AKD + +I + Sbjct: 510 SDIMGLEDHDGDMDFKVTGSKDG-ITAMQMDIKLGGISLDILKEALYQAKDGRSHIIDIM 568 Query: 235 KDV 237 D Sbjct: 569 IDA 571 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 69/207 (33%), Gaps = 24/207 (11%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRV 74 V++ A GS +K GD+ +L T ++E I +T +Y + G Sbjct: 20 DVARQANGSAWLKSGDSVILATVVIDETE---IVKDDFLPLTVQYIEKTYAAGKIPGGFF 76 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE + R++ R+LR + QI I + Sbjct: 77 KRET---KPSDFETLTSRIVDRSLRPLFPKGFGHPTQITIMV-------------FSAGS 120 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194 A L + + + V+A+ + G +++ + +D T Sbjct: 121 DADLQVLALNAASAALYTSDIDINTSVSAVRAAKVDGELVLNPTLSQLKEATLDLYLSGT 180 Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLN 221 ++ ++ + + +Q +++ Sbjct: 181 KDD-LLMIEMRSFGSNETQIEENYIID 206 >gi|118087502|ref|XP_419282.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 728 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 87/248 (35%), Gaps = 17/248 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWI-----RN 53 R GR +R+I + K GS L + G T +L T ++E V + Sbjct: 303 RCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSG 362 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + RAL+ V+ I Sbjct: 363 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAERALKPVIPQDF--PFTIR 416 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + Sbjct: 417 VTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYDPEGRD--IEDYRL 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + A +++++ Sbjct: 475 LTDILGIEDYYGDMDFKMAGTSKG-VTALQVDLKLPGIPIKIIMEAIQQATAAKREILQI 533 Query: 234 QKDVISNE 241 + ++ Sbjct: 534 MNETLAKP 541 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 33/215 (15%) Query: 29 LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 L++ GDT ++ TA + K ++ + +Y + G R+ + G + Sbjct: 17 LIQLGDTAVMVTAVSKTK----PSASQFMPLVVDYRQKAAAAG-RIPTNYLRRELGTTDK 71 Query: 89 EI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHM 144 EI R+I R++R + + QI+ C+++ DG AI GA AL Sbjct: 72 EILTSRVIDRSIRPLFPVGYFYDTQIL--CNLLAVDGVNDPDVLAINGASAALA------ 123 Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204 G V A+ G++ G +++ + S+ ++ +V ++ Sbjct: 124 -------LSDIPWNGPVGAVRVGLVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVMLEA 176 Query: 205 SAERATFSQDHFFAMLNLAKD-------RIADLIK 232 +AE Q F + + I L+K Sbjct: 177 TAENIL--QQDFCHAIKVGVKQTQHIIQGIQQLVK 209 >gi|296448311|ref|ZP_06890203.1| polyribonucleotide nucleotidyltransferase [Methylosinus trichosporium OB3b] gi|296254188|gb|EFH01323.1| polyribonucleotide nucleotidyltransferase [Methylosinus trichosporium OB3b] Length = 714 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 18/242 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR +R I V A GS L G+T L ATL ++ G Sbjct: 315 VRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+R ++ +A I + Sbjct: 375 ERFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPAAAEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A + G+ +AL D ++ + + +L+G A+ + D Sbjct: 431 EITESNGSSSMATVCGSSLALMDAGVPLKKPTAGIAMGLILEGERFAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + A +++ L A+D ++ Sbjct: 482 ILGDEDHLGDMDFKVAGTSEG-VTSLQMDIKIAGITEEIMRVALAQARDGRLHILGEMAK 540 Query: 237 VI 238 + Sbjct: 541 AL 542 Score = 81.7 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 72/227 (31%), Gaps = 27/227 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ L +++ A+G+ +G+T +L T + K P +T Y + Sbjct: 14 RKLVLETGKIARQADGAVFASWGETTVLATV-VSAKAPK--PGQDFFPLTVNYQEKAFAA 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR R + R+I R +R + Q+I+ + Sbjct: 71 GRIPGGYFKRE---GRPSERETLVSRLIDRPIRPLFPDGYRNDTQVILTVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G V A G + G ++ E Sbjct: 128 ILAMVAASAALTLSGI-------------PFMGPVGAARVGYINGQLKLNPTIEEMKLSV 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E S+D + +I Sbjct: 175 LDLVVAGTSDAVLMV---ESEAQELSEDVMLGAVMTGHRGFQPVIDA 218 >gi|296132896|ref|YP_003640143.1| polyribonucleotide nucleotidyltransferase [Thermincola sp. JR] gi|296031474|gb|ADG82242.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR] Length = 735 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 96/250 (38%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R+ GR+ +++R I + GS L G T +LT A +E++ + + Sbjct: 348 IRIDGRKLDEVRPIECHVGILPRTHGSGLFTRGQTQVLTVTTLGAVGDEQILDGLGVEES 407 Query: 57 GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G R R G R + RAL ++ I + Sbjct: 408 KRYMHHYNFPPYSVGEARFMRG-----PGRREIGHGALAERALEPMIPSEDEFPYTIRLV 462 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V++++G + ++ G+ ++L D +K V+ ++ G++ Sbjct: 463 SEVLESNGSSSMGSVCGSTLSLMDAGV-------------PIKRPVSGVAMGLIKEEDAF 509 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T+ G + +Q + A S++ L A++ ++ Sbjct: 510 AVLTDIQGMEDHLGDMDFKVAGTEKG-VTAIQMDIKIAGISKEILQVALTQAREGRMHIL 568 Query: 232 KLQKDVISNE 241 +VI Sbjct: 569 SKMLEVIDKP 578 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 27/225 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 RE+ + K A G+ ++GDT +L TAT E + + + G + Sbjct: 35 REMVIETGRMAKQATGAVFCRYGDTAVLVTATCSPEPREGIDFFPLTVDYEERLYAVGKI 94 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + I+ + D Sbjct: 95 P---GGFIKRE---GRPSEKAILSSRLIDRPIRPLFPKGYRNDVHIVATVLSVDQDNAPD 148 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA AL G + A+ G + G I++ + D Sbjct: 149 VTAINGASAALMISGI-------------PFLGPIGAVVVGRVDGKFIINPTIAQAEVSD 195 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + T ++ V+ A+ ++ ++ + I ++ Sbjct: 196 MHLTVAGTKDA-VIMVEAGAKEVP--EEVILEAISYGHEEIKKIV 237 >gi|327296349|ref|XP_003232869.1| exosome complex endonuclease 1/ribosomal RNA processing protein [Trichophyton rubrum CBS 118892] gi|326465180|gb|EGD90633.1| exosome complex endonuclease 1/ribosomal RNA processing protein [Trichophyton rubrum CBS 118892] Length = 302 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 13/208 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59 +RL GR+ N++R + + + GS + G+T +L T + I Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + +R K+ A G R + E+ + A + + I + Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTITVHVS 133 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCG---- 171 V+ +DG A + +AL D M + + A++ + G Sbjct: 134 VLSSDGSLLAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGIKES 193 Query: 172 -YPIVDLDYGED---STIDVDANFVMTD 195 P++D+ E+ + V M D Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPD 221 >gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-44] gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-44] Length = 717 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKSDEVRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEQDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G + +Q + S++ L AK ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTANG-VTALQMDIKIDGLSREILEEALQQAKIGRMHILD 536 Query: 233 LQKDVISNE 241 I+ Sbjct: 537 HMLTAIAEP 545 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDVPFEGPIAGATVGRIDGEFVINPTVEQQEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I L+ Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLVAFQEEIV 223 >gi|289766578|ref|ZP_06525956.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11] gi|289718133|gb|EFD82145.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11] Length = 703 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RALR V+ I + + Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSE 443 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 444 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 490 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A ++++L Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILEL 549 Query: 234 QKDVISNE 241 IS Sbjct: 550 MNSTISKP 557 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 33/233 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + ++ +S+ + G+ ++++GDT LL+TA + + +T +Y ST Sbjct: 18 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTA---NRSKEARKGADFFPLTVDYIEKFYST 74 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 G KRE GR + + R+I R +R + + + I V+ D Sbjct: 75 GKFPGGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINT 129 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 I G+ +AL G VA ++ G G I++ E Sbjct: 130 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPKELEE 176 Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D + T ++VE A ++ + A + I + + Q++ Sbjct: 177 SELDLSVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 225 >gi|256028665|ref|ZP_05442499.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D11] Length = 699 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RALR V+ I + + Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A ++++L Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILEL 545 Query: 234 QKDVISNE 241 IS Sbjct: 546 MNSTISKP 553 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 33/233 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + ++ +S+ + G+ ++++GDT LL+TA + + +T +Y ST Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTA---NRSKEARKGADFFPLTVDYIEKFYST 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 G KRE GR + + R+I R +R + + + I V+ D Sbjct: 71 GKFPGGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINT 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 I G+ +AL G VA ++ G G I++ E Sbjct: 126 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPKELEE 172 Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D + T ++VE A ++ + A + I + + Q++ Sbjct: 173 SELDLSVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221 >gi|160900616|ref|YP_001566198.1| polynucleotide phosphorylase/polyadenylase [Delftia acidovorans SPH-1] gi|226702646|sp|A9BNB8|PNP_DELAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160366200|gb|ABX37813.1| Polyribonucleotide nucleotidyltransferase [Delftia acidovorans SPH-1] Length = 753 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L +TL + + Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPSKEEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTSG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 +++ +++ A G+ LV DT +L T + + + T G +P Sbjct: 18 VTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + ++I + + A Sbjct: 77 --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTVSLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ + +D Sbjct: 132 ALIATSAALSVSGI-------------PFNGPIGAARVGFINGEYVLNPGQTQRKDSQMD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 T++ ++ +E +D + + I + +L ++ Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLPEDVMLGAVVFGHEQGRIAIDAIHELVREA 228 >gi|212212692|ref|YP_002303628.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii CbuG_Q212] gi|226702642|sp|B6J0K5|PNP_COXB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|212011102|gb|ACJ18483.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii CbuG_Q212] Length = 696 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I++ V + GS L G+T L TL + + + Sbjct: 318 RIDGRDSKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQE 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G R+ G R+ RA+ VV I + + Sbjct: 378 EFIFHYNFPPFCVGEVGFMSGPKRREIGHG----RLAKRAVVPVVPTLDKFPYVIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 +++++G + A++ G+ +AL D K VA I+ G++ Sbjct: 434 ILESNGSSSMASVCGSSLALMDAGV-------------PTKAPVAGIAMGLIKENDKYAV 480 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ L+ AK+ ++ + Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMEQALDQAKEGRLHILSI 539 Query: 234 QKDVISNE 241 V+ Sbjct: 540 MNKVLDKP 547 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 30/230 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 E++ +++ A G+ +V+ GDT LL + EE + + T G +P Sbjct: 14 EVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTINYQEKTYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R LR + Q+I + + T Sbjct: 74 ---GGYFKRE---GRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA A+ G + A G G +++ E + Sbjct: 128 PAILGASAAIGLSGI-------------PFNGSLGAARVGYRGGEYLLNPSLDELKDSAL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQD-----HFFAMLNLAKDRIADLIK 232 D T ++ V+ A+ S H + +A IA+ I+ Sbjct: 175 DLVVAGTRDA-VLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQ 223 >gi|219669688|ref|YP_002460123.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium hafniense DCB-2] gi|254782717|sp|B8FR00|PNP_DESHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219539948|gb|ACL21687.1| Polyribonucleotide nucleotidyltransferase [Desulfitobacterium hafniense DCB-2] Length = 723 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR +++R IS+ + G+ L G T +LT AT +E++ + + Sbjct: 319 IRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLGAVGDEQILDGLGLEES 378 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL V+ I + Sbjct: 379 KRYMHHYNFPPYSVGETRPMRGPGRREIGHG----ALAERALLPVIPNENDFPYTIRLVS 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 435 EVLESNGSSSMASVCGSTLSLMDAGV-------------PVKSPVAGIAMGLISEENHIA 481 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + S++ L AK+ Sbjct: 482 ILSDIQGMEDHDGDMDFKVAGTSQG-VTALQMDIKIKGVSREILERALTQAKEG 534 Score = 71.7 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 27/226 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R ++ K A G+ ++GDT + AT E + + + G + Sbjct: 15 RTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVEFEERLYAAGKI 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 P---GGFIKRE---GRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQDCASD 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I A AL + +G VAA++ G++ I++ + Sbjct: 129 ITGINAASAAL-------------TISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSV 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ V+ A+ + + I + + Sbjct: 176 MHLTVAGTKDA-VMMVEAGAQEVP--EAQMLEAIMFGHREIQRIAE 218 >gi|299137357|ref|ZP_07030539.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp. MP5ACTX8] gi|298600762|gb|EFI56918.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp. MP5ACTX8] Length = 818 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56 +R R +++R I++ V GS L G+T L +ATL + Sbjct: 314 IRPDHRAFDEIRAITIETGVLPRVHGSALFTRGETQALVSATLGTTDDAQRMESYEGEQK 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + V R+ G + RA+ +V+ + + Sbjct: 374 RKFMLHYNFPPFSVGEVGRMTGVGRREIGHG----ALAWRAIEAVLPGEDESPYTLRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A + GA ++L ++ + V +G AI + D Sbjct: 430 DILESNGSSSMATVCGASLSLMQAGIPLKGSVAGVAMGLVKEGDKYAI---------LTD 480 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T +G I +Q + + L A+ L+ Sbjct: 481 IAGAEDHYGDMDFKVAGTRNG-ITALQMDIKIMGITAQIMREALEQARHGRLFLLDKMDA 539 Query: 237 VISN 240 +IS Sbjct: 540 IISK 543 Score = 94.0 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 27/225 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +I ++K A G+ GD +L TA +E + + ++ T G +P Sbjct: 14 QIKFETGRIAKQASGAAYTTSGDNAVLATAVASPDPKEGIDFFPLTVEYREFTYAGGRIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R I R +R + + Q++ + Sbjct: 74 ---GGFIKRE---GRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADKENDPDV 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I GA AL G V A+ G + IV+ Y E T + Sbjct: 128 LGINGASCALA-------------LSDIPFHGPVGAVRIGYIDEQYIVNPTYTERLTSKL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + V T G IV V+ A+ ++ + A + I ++ Sbjct: 175 NIMVVGTKDG-IVMVESGAKEIP--EEVVVGAIEFAHEEIKKIVA 216 >gi|294943374|ref|XP_002783844.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC 50983] gi|239896637|gb|EER15640.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC 50983] Length = 248 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 29/245 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--------MWIR 52 RL GR+ N++R ++L + A+GS ++ G T ++ + + Sbjct: 13 FRLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGPRPLQAASVGRAAGTMA 72 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 + Y +T +R +R R +QR+I A V I Sbjct: 73 RQGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDA----VLTEMFPKSCI 128 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + ++Q DG + +K +A + G++ Sbjct: 129 DVHLTILQEDGS-------------ALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQ 175 Query: 173 -PIVDLDYGE-DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 PIVDL++ E + + E+ + + F + +LA + Sbjct: 176 KPIVDLNHAESEGCGGAVVTVAVYQRRK--ELNYLCLEGKINIESFESAADLAIEGAVTA 233 Query: 231 IKLQK 235 ++ + Sbjct: 234 VRAMR 238 >gi|172057841|ref|YP_001814301.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium sibiricum 255-15] gi|226702652|sp|B1YI57|PNP_EXIS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|171990362|gb|ACB61284.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium sibiricum 255-15] Length = 739 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 91/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R GR ++R + + A GS L G T +L+ ATL I + Sbjct: 316 VRPDGRGLAEIRPLDSEIGLLPRAHGSGLFTRGQTQVLSVATLGVAGDAQIIDGLGLKAE 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RAL V+ I + Sbjct: 376 KRFMHHYNFPPFSVGEARPMRAPGRREIGHG----ALGERALLPVLPSETDFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172 +V++++G + A+I G+ +A+ D LK VA I+ G++ G Sbjct: 432 EVLESNGSSSQASICGSILAMMDAGV-------------PLKAPVAGIAMGLIKEGENYS 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + ++ L A+ +++ Sbjct: 479 ILTDIQGMEDHLGDMDFKVAGTKDG-VTALQMDMKIGGITRQILEEALEQARLGRLHILE 537 Query: 233 LQKDVISNE 241 VI+ Sbjct: 538 HMNSVIAEP 546 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ L+++G+T +L T + + + + G +P Sbjct: 15 RPLTIEIGQLAKQANGAALIRYGETAVLATVVASKQPKDLDFFPLTVNYEEKLYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR G + R+I R +R + Q+ D Sbjct: 75 ---GGFLKRE---GRPGENAILTSRLIDRPIRPLFPDGFRHDIQVATTVLSSDEDNSPEV 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ GA +AL G +A ++ G + G I++ + S D+ Sbjct: 129 AAMIGASIALS-------------ISDIPFDGPIAGVTIGRVNGEFIINPTMSQASESDI 175 Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D T + ++VE A S+ + L D I +LI Q+++++ Sbjct: 176 DLQVAGTKHAVNMVE----AGAKEVSEQAMLEAILLGHDVIKELIAFQEEIVA 224 >gi|29654180|ref|NP_819872.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA 493] gi|154705957|ref|YP_001424300.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii Dugway 5J108-111] gi|161829803|ref|YP_001596852.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA 331] gi|81629147|sp|Q83D87|PNP_COXBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610292|sp|A9KFK6|PNP_COXBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610293|sp|A9ND62|PNP_COXBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29541446|gb|AAO90386.1| hypothetical protein CBU_0852 [Coxiella burnetii RSA 493] gi|154355243|gb|ABS76705.1| hypothetical protein CBUD_0917 [Coxiella burnetii Dugway 5J108-111] gi|161761670|gb|ABX77312.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA 331] Length = 696 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I++ V + GS L G+T L TL + + + Sbjct: 318 RIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQE 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G R+ G R+ RA+ VV I + + Sbjct: 378 EFIFHYNFPPFCVGEVGFMSGPKRREIGHG----RLAKRAVVPVVPTLDKFPYVIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 +++++G + A++ G+ +AL D K VA I+ G++ Sbjct: 434 ILESNGSSSMASVCGSSLALMDAGV-------------PTKAPVAGIAMGLIKENDKYAV 480 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ L+ AK+ ++ + Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMEQALDQAKEGRLHILSI 539 Query: 234 QKDVISNE 241 V+ Sbjct: 540 MNKVLDKP 547 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 30/230 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 E++ +++ A G+ +V+ GDT LL + EE + + T G +P Sbjct: 14 EVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R LR + Q+I + + T Sbjct: 74 ---GGYFKRE---GRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA A+ G + A G G +++ E + Sbjct: 128 PAILGASAAIGLSGI-------------PFNGSLGAARVGYRGGEYLLNPSLDELKDSAL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQD-----HFFAMLNLAKDRIADLIK 232 D T ++ V+ A+ S H + +A IA+ I+ Sbjct: 175 DLVVAGTRDA-VLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQ 223 >gi|169827176|ref|YP_001697334.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus sphaericus C3-41] gi|226702661|sp|B1HR13|PNP_LYSSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|168991664|gb|ACA39204.1| Polyribonucleotide nucleotidyltransferase [Lysinibacillus sphaericus C3-41] Length = 704 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 90/245 (36%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S + + GS L G T L T A + ++ + + Sbjct: 314 IRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVEES 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL +V+ ++ I Sbjct: 374 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEAVIPDESVFPYTIRCVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G T A+I + +A+ D ++ + + KG +I + D Sbjct: 430 EVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSI---------LTD 480 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L AK +++ Sbjct: 481 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539 Query: 237 VISNE 241 ++ Sbjct: 540 TLAEP 544 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+TAT+ + + + + G +P Sbjct: 14 RPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKPLDFFPLTVNYEERLYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I +D + Sbjct: 74 ---GGFIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G IV+ + + + Sbjct: 128 AAMVGSSLALA-------------ISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNQSTI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + I V+ A ++ + + I +I Q+ +++ Sbjct: 175 HLSVAGNKDA-INMVEAGALEVP--EEVMLEAIMFGHEEIKKIIAFQEQIVAE 224 >gi|54295598|ref|YP_128013.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila str. Lens] gi|81367664|sp|Q5WT40|PNP_LEGPL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|53755430|emb|CAH16926.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str. Lens] Length = 729 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R IS+ + + GSCL G+T + ATL + I Sbjct: 314 RIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ RAL +V+ + + I + Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D ++ + + +G A+ + D+ Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + + + + L A + ++ + + Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNA 539 Query: 238 ISNE 241 ++ Sbjct: 540 LAEH 543 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRST 70 L V++ A+G+ + T +L T E + + G +P Sbjct: 17 LETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP--- 73 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR I R+I R +R + + QII + + A+ Sbjct: 74 GGFNKRE---GRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDIIAM 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL G + A G G +++ E +D Sbjct: 131 IGASAALS-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 T I+ V+ +E S+D + + K+ I + +L +DV Sbjct: 178 IAGTKDA-ILMVE--SEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDV 225 >gi|158320566|ref|YP_001513073.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus oremlandii OhILAs] gi|187470976|sp|A8MFB4|PNP_ALKOO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|158140765|gb|ABW19077.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus oremlandii OhILAs] Length = 706 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R RQ +++R IS + GS L G T +L+ T + ++ + + Sbjct: 314 RPDDRQHDEIRPISCEVDLLPKTHGSGLFTRGQTQVLSIVTLGAIGDVQILDGLGKEESK 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G + RAL ++ I + + Sbjct: 374 RYMHHYNFPPYSVGETKMLRSPGRREIGHG----ALAERALEPMIPSQDDFPYAIRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G + A++ G+ ++L D ++D + V +G AI + D+ Sbjct: 430 VLASNGSSSQASVCGSTLSLLDAGVPLKDMVAGIAMGLVKEGDAVAI---------LSDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + + L A+ ++ K+ Sbjct: 481 QGMEDHLGDMDFKVAGTAKG-ITAIQMDIKIKGIDEPILKDALEQARVGRLYILDKMKEA 539 Query: 238 ISNE 241 IS+ Sbjct: 540 ISSP 543 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 27/225 (12%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + + + GSCL+K+G T +L A + E + + + + G + Sbjct: 12 RVLEVEVGKLAQLSNGSCLLKYGQTAVLVNACASKSPREGIDFFPLSVDYEEKMYAAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I R +R + QII + D Sbjct: 72 P---GGFIKRE---GRPSENAILTSRLIDRPIRPLFPDGYRNDVQIIATVLSVDIDCTPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ +AL +G A++ G++ G +++ E Sbjct: 126 IVAMLGSSIALS-------------ISDIPFQGPTASVHVGLVDGKLLINPTSDEREHSS 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 +D T ++ ++ A ++ + A + I ++I Sbjct: 173 LDLVVSGTKDA-VMMIEAGANE--VTEAQMLEAILFAHEEIKNII 214 >gi|332528747|ref|ZP_08404724.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis ATCC 19624] gi|332041813|gb|EGI78162.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis ATCC 19624] Length = 717 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L TL + + Sbjct: 317 RIDGRDTRTVRPIEIRDSVLPRTHGSALFTRGETQALVITTLGTERDAQRIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL +V+ + + + Sbjct: 377 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALVAVLPTKEEFPYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G ++L + LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSLMNAGV-------------PLKAHVAGIAMGLIKEDNKFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITREIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 + + Sbjct: 539 MQAAVGE 545 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 +++ +++ + G+ LV DT +L T + + + + + G +P Sbjct: 18 VTMETGEIARQSSGAVLVNVDDTVVLATVVASKSAKPGQDFFPLTVDYLEKSYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KRE GR R+I R +R + Q++I + + Sbjct: 77 --GSFFKRE---GRPSEYETLTSRLIDRPIRPLFPEGFFNEVQVVIHTVSLNPEVDADIP 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ + +D Sbjct: 132 AMIATSAALAISGI-------------PFNGPIGAARVGYINGEYVLNPGQTQRKDSQMD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 T++ ++ +E S++ + + K I + L +D Sbjct: 179 LVVAGTETAVLMV---ESEALQLSEEIMLGAVVFGHDQGKIAINAIHDLVRDA 228 >gi|307611640|emb|CBX01326.1| polynucleotide phosphorylase [Legionella pneumophila 130b] Length = 729 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R IS+ + + GSCL G+T + ATL + I Sbjct: 314 RIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ RAL +V+ + + I + Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D ++ + + +G A+ + D+ Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + + + + L A + ++ + + Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNA 539 Query: 238 ISNE 241 ++ Sbjct: 540 LAEH 543 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRST 70 L V++ A+G+ + T +L T E + + G +P Sbjct: 17 LETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP--- 73 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR I R+I R +R + + QII + + A+ Sbjct: 74 GGFNKRE---GRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDIIAM 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL G + A G G +++ E +D Sbjct: 131 IGASAALS-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237 T I+ V+ +E S+D + + K+ I + +L +DV Sbjct: 178 IAGTKDA-ILMVE--SEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDV 225 >gi|89895255|ref|YP_518742.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium hafniense Y51] gi|122482382|sp|Q24UJ4|PNP_DESHY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89334703|dbj|BAE84298.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 727 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR +++R IS+ + G+ L G T +LT AT +E++ + + Sbjct: 319 IRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLGAVGDEQILDGLGLEES 378 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL V+ I + Sbjct: 379 KRYMHHYNFPPYSVGETRPMRGPGRREIGHG----ALAERALLPVIPDENDFPYTIRLVS 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 435 EVLESNGSSSMASVCGSTLSLMDAGV-------------PVKSPVAGIAMGLISEENHIA 481 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + S++ L AK+ Sbjct: 482 ILSDIQGMEDHDGDMDFKVAGTSQG-VTALQMDIKIKGVSREILERALTQAKEG 534 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 27/226 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R ++ K A G+ ++GDT + AT E + + + G + Sbjct: 15 RTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVEFEERLYAAGKI 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 P---GGFIKRE---GRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQDCASD 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I A AL + +G VAA++ G++ I++ + Sbjct: 129 ITGINAASAAL-------------TISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSV 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ V+ A+ + + I + + Sbjct: 176 MHLTVAGTKDA-VMMVEAGAQEVP--EAQMLEAIMFGHREIQRIAE 218 >gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus communis] Length = 948 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 17/238 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56 R GR + +R I+ + A GS L G+T L ATL + KV + + Sbjct: 450 RSDGRNADGIRPINSRCGLLPRAHGSALFTRGETQSLAVATLGDKQMAQKVDNLVDVDEF 509 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A S R+ G + RAL ++ A I ++ Sbjct: 510 KRFYLQYSFPPSSVGEVGRMGAPSRREIGHGM----LAERALEPILPSEADFPYTIRVES 565 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 + +++G + A++ G +AL D ++ + G V G P++ Sbjct: 566 TITESNGSSSMASVCGGCLALQDAGVPVKCSIAGIAM-----GMVLDTEEFGGDGTPLIL 620 Query: 176 -DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D+ ED++ D+D + G + Q + + L A+D ++ Sbjct: 621 SDITGSEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLPVMRRALLQARDGRKHILA 677 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 27/224 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68 R I + + + A GS +V G+T + TT L++ VP + + + + R Sbjct: 100 RHILVETGHTGRQASGSVMVTDGETIVYTTVCLDD-VPSEPSDFFPLSVNYQERFSAAGR 158 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 ++G KRE GR I R+I R LR + QI+ V+ DG + Sbjct: 159 TSGGFFKRE---GRAKDHEVLICRLIDRPLRPTMLKGFYHETQIL--SWVLSYDGLHSSD 213 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+T A +A+ +A + G++ IV+ E Sbjct: 214 ALAVTAAGIAVA-------------LSEVPTTKAIAGVRVGLVGDKFIVNPTTKEMEESK 260 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +D TDS I+ ++G ++ + + +D + + Sbjct: 261 LDLVMAGTDSA-ILMIEG--YCNFLPEEKLLEAVQVGQDAVRAI 301 >gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC 10987] gi|81409473|sp|Q732R5|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 10987] Length = 712 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILD 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|153207996|ref|ZP_01946530.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU Goat Q177'] gi|165918905|ref|ZP_02218991.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA 334] gi|212218334|ref|YP_002305121.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii CbuK_Q154] gi|226702641|sp|B6J6S7|PNP_COXB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120576196|gb|EAX32820.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU Goat Q177'] gi|165917375|gb|EDR35979.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA 334] gi|212012596|gb|ACJ19976.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii CbuK_Q154] Length = 696 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I++ V + GS L G+T L TL + + + Sbjct: 318 RIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQE 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G R+ G R+ RA+ VV I + + Sbjct: 378 EFIFHYNFPPFCVGEVGFMSGPKRREIGHG----RLAKRAVVPVVPTLDKFPYVIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 +++++G + A++ G+ +AL D K VA I+ G++ Sbjct: 434 ILESNGSSSMASVCGSSLALMDAGV-------------PTKAPVAGIAMGLIKENDKYAV 480 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ L+ AK+ ++ + Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMEQALDQAKEGRLHILSI 539 Query: 234 QKDVISNE 241 V+ Sbjct: 540 MNKVLDKP 547 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 30/230 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 E++ +++ A G+ +V+ GDT LL + EE + + T G +P Sbjct: 14 EVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R LR + Q+I + + T Sbjct: 74 ---GGYFKRE---GRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA A+ G + A G G +++ E + Sbjct: 128 PAILGASAAIGLSGI-------------PFNGSLGAARVGYRGGEYLLNPSLDELKDSAL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQD-----HFFAMLNLAKDRIADLIK 232 D T ++ V+ A+ S H + +A IA+ I+ Sbjct: 175 DLVVAGTRDA-VLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQ 223 >gi|298293847|ref|YP_003695786.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM 506] gi|296930358|gb|ADH91167.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM 506] Length = 718 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 91/242 (37%), Gaps = 18/242 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR +R I V A GS L G+T L ATL ++ G Sbjct: 317 VRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+R ++ + + Sbjct: 377 ERFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIRPILPPAHEFPYTLRAVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G +AL D M + +L+G A+ + D Sbjct: 433 EILESNGSSSMATVCGTSLALMDAGVPMRRPVAGIAMGLILEGEKFAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D TD G + +Q + A +++ L AKD A ++ Sbjct: 484 ILGDEDHLGDMDFKVAGTDKG-VTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEMAK 542 Query: 237 VI 238 + Sbjct: 543 AL 544 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 36/235 (15%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L + A+G+ L +GDT +L TA + + + G + Sbjct: 14 RTLVLETGRMARQADGAVLATYGDTTVLATAVSAKAPKPGQDFFPLTVNYQEKAYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+++ + Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFAEGYKNDTQVVVTVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ A AL G + G + +++ E Sbjct: 128 VVSMVAASAAL-------------TLSGVPFMGPIGGARVGFIDNEYVLNPTLDEVKESA 174 Query: 187 VDANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLN----LAKDRIAD 229 +D T ++ E + AE F HF +++ LA+ + Sbjct: 175 LDLVVAGTADAVLMVESEAKELAEEVMLGAVMFGHRHFQPVIDAIIRLAEKAAKE 229 >gi|239816487|ref|YP_002945397.1| polynucleotide phosphorylase/polyadenylase [Variovorax paradoxus S110] gi|259534173|sp|C5CT24|PNP_VARPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|239803064|gb|ACS20131.1| Polyribonucleotide nucleotidyltransferase [Variovorax paradoxus S110] Length = 772 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L TL + + G Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGTERDAQRIDALAGEYED 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ I + + Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 77/237 (32%), Gaps = 39/237 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + + +++ A G+ +V T +L T T + + + T G +P Sbjct: 18 VVMETGEIARQASGAVVVDIDGTVILATVVASKTAKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + L ++I + + A Sbjct: 77 --GSFFKREA---KPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTLSLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G + G +++ +D Sbjct: 132 AMIGVSAALSISGI-------------PFSGPIGAARVGYINGQYVLNPGQTARKDSQMD 178 Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 T++ ++ E Q +E F + A I + +L +D Sbjct: 179 LVVAGTEAAVLMVESEAQQLSEEIMLGGVVFGHEQ-------ANIAINAIHELVRDA 228 >gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus H3081.97] gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187] gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1] gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST26] gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293] gi|226702618|sp|B7HLE0|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782706|sp|B9IV96|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus H3081.97] gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187] gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1] gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293] gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST26] gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 712 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILD 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|326914729|ref|XP_003203675.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Meleagris gallopavo] Length = 864 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 88/248 (35%), Gaps = 17/248 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWI-----RN 53 R GR +R+I + K GS L + G T +L T ++E V + Sbjct: 439 RCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSG 498 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + RAL+ V+ I Sbjct: 499 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAERALKPVIPQDF--PFTIR 552 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + + Sbjct: 553 VTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYDLEGRD--LEDYRL 610 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + A +++++ Sbjct: 611 LTDILGIEDYYGDMDFKMAGTSKG-VTALQVDLKLPGIPIKIIMEAIQQATAAKREILQI 669 Query: 234 QKDVISNE 241 + ++ Sbjct: 670 MNETLAKP 677 Score = 78.6 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 25/202 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ L+ ++A+G+ +V+ GDT ++ TA + K ++ + +Y + Sbjct: 135 RKMELSSGKLARFADGAAVVQLGDTAVMVTAVSKTK----PSASQFMPLVVDYRQKAAAA 190 Query: 71 GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 G R+ + G +EI R+I R++R + + QI+ C+++ DG Sbjct: 191 G-RIPTNYLRRELGTTDKEILTSRVIDRSIRPLFPVGYFYDTQIL--CNLLAVDGVNDPD 247 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA AL G V A+ G++ G +++ + S+ Sbjct: 248 VLAINGASAALA-------------LSDIPWNGPVGAVRVGLVDGETVINPTRKQMSSST 294 Query: 187 VDANFVMTDSGHIVEVQGSAER 208 ++ +V ++ +AE Sbjct: 295 LNLVVAAAPQNQVVMLEATAEN 316 >gi|319794672|ref|YP_004156312.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus EPS] gi|315597135|gb|ADU38201.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus EPS] Length = 775 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T L TL + + G Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGTERDAQRIDALAGEYED 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 75/237 (31%), Gaps = 39/237 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + + V++ A G+ LV T +L T + + + + T G +P Sbjct: 18 VVMETGEVARQANGAVLVDIDGTVILATVVASKSAKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + L ++I + + A Sbjct: 77 --GSFFKREA---KPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTVSLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G + G +++ +D Sbjct: 132 AMIGVSAALSISGI-------------PFSGPIGAARVGYINGQYVLNPGQTARKDSQMD 178 Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 T + ++ E Q +E F + A I + L +D Sbjct: 179 LVVAGTQAAVLMVESEAQQLSEEIMLGGVVFGHEQ-------AGIAINAIHDLVRDA 228 >gi|224540971|ref|ZP_03681510.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM 15897] gi|224526122|gb|EEF95227.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM 15897] Length = 712 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R + + GS + G+T +L T A E + + Sbjct: 318 VRPDGRKVDEVRPLDAQVDLLPRVHGSAMFTRGETQVLSACTLGALGEVQKIDGLGMEDQ 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G + G G R + RALR V+ I + Sbjct: 378 KRFMHHYNFPPYCVGETGR----MGSPGRREIGHGALGERALRQVIPSETEFPYTIRVVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I + +AL + VA ++ G++ Sbjct: 434 EVLESNGSSSQASICASTMALMAAGV-------------PISNPVAGVAMGLVKKGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I +Q + +++ L AK ++ Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTKNG-ICALQMDIKIDGITKEILQEALAQAKVARGQIMD 539 Query: 233 LQKDVISNE 241 IS Sbjct: 540 CMMSAISEP 548 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPR 68 +I + ++K A GSCLV++ DT +L + V + + G +P Sbjct: 14 KIQVEVGEMAKQANGSCLVRYDDTVVLSTACAGKEPKDVDFFPLTVTYEEKLYSVGKIP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR RMI R +R + Q++ + + A Sbjct: 73 --GGFLKRE---GRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQEATPEMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA +AL G +A ++ G++ G V+ ED + Sbjct: 128 AMLGASIALC-------------ISDIPFNGPIAGVNVGLIDGEFTVN-AGPEDM-ARSE 172 Query: 189 ANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 N V I V+ A+ ++ L ++I +LI Q+ ++ Sbjct: 173 INLEVAGTKDAINMVEADAKE--VDEETMLNALMFGHEKIKELIAFQEQIVE 222 >gi|315452709|ref|YP_004072979.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC 49179] gi|315131761|emb|CBY82389.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC 49179] Length = 679 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 21/243 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKHG 57 R GR +R IS+ + + GS L G T ++ T + + Sbjct: 307 RPDGRGFETIRPISIETNLLPHCHGSALFTRGHTQALVVCTVGGPNDAKLQENLDGLHKE 366 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G A R+ G + AL+ + S + I + + Sbjct: 367 RFMFHYNFPPFSVGEATPLSAPGRREIGHG----NLAKCALQGSILES---DQTIRLVSE 419 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +AL+ ++ + +++G AI + D+ Sbjct: 420 ILESNGSSSMASVCGGSLALYASGIKLKSLIAGVAMGLIIQGEETAI---------LSDI 470 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D G +V +Q + A S +L AK+ +++ + Sbjct: 471 SALEDMQGDMDFKIAGNLEG-VVALQMDTKIAGLSLALLSQILQQAKEARGAILECMEQA 529 Query: 238 ISN 240 I Sbjct: 530 IEG 532 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 20/166 (12%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE G+ R I R+LR + QI + V+ D Sbjct: 66 GGFNKRE---GKLSEFETLTSRAIDRSLRPLFAKDYAHPTQITL--LVLSHD-------- 112 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 L C H + + +VAA+ G + G + + + E D N Sbjct: 113 --QQSDLQVCALHAAANALYLANLGI--ENVAAVRVGRIGGKIVYNPNATELQKS--DLN 166 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-LIKLQK 235 ++ + + + + + + +L A+ I + ++ QK Sbjct: 167 LYVSGTSEALLMVEMHSQESLPEATLLDLLEKAQKHIRENCLQFQK 212 >gi|148651980|ref|YP_001279073.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter sp. PRwf-1] gi|187611275|sp|A5WBT2|PNP_PSYWF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148571064|gb|ABQ93123.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter sp. PRwf-1] Length = 704 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR + +R + + V Y GS L G+T L T TL + + ++ G I Sbjct: 320 RIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNLIDSLAGTIQD 379 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++++ S I + + Sbjct: 380 HFMLHYNFPHYSVGETGREGVPKRREIGHG----RLARRGVQAMLPDSDRFPYVIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D LK VA I+ G++ Sbjct: 436 ITESNGSSSMASVCGASLALMDAGV-------------PLKAPVAGIAMGLVKEGDRFAV 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + D L A ++ Sbjct: 483 LSDILGDEDHLGDMDFKVAGTKDG-ITALQMDIKIEGITSDIMEKALEQAHAGRIHILNA 541 Query: 234 QKDVI 238 +V+ Sbjct: 542 MNEVL 546 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 73/243 (30%), Gaps = 50/243 (20%) Query: 13 EISLTRRVSKYAEGSCLVKFG------------DTHLLTTATLEEKVPMWIRNTKHGWIT 60 ++ + S LV G D E + + Sbjct: 17 QVVIETGRIARQANSVLVHMGGVSVLVAVVVKSDAK--------EGQNFFPLTVNYQEKM 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 G +P + G R GR R+I R +R + + QI VI Sbjct: 69 YAAGKIPGAYGKR------EGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITAT--VIS 120 Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 +D AA+ GA AL G + G + G +++ Sbjct: 121 SDKKHYADIAAMIGASAALS-------------ISDAPFNGPIGGARVGFINGEYVLNPS 167 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQ 234 E + D+D T S ++ +E A S+D + ++ I ++ +L Sbjct: 168 IEELKSSDLDLVVAGTKSAVLMV---ESEAAELSEDQMLGAVLYGHEQQQIVIDNIAELA 224 Query: 235 KDV 237 K V Sbjct: 225 KAV 227 >gi|299530738|ref|ZP_07044153.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni S44] gi|298721254|gb|EFI62196.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni S44] Length = 747 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L +TL + + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNKFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 31/232 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 +++ +++ A G+ LV DT +L T + + + T G +P Sbjct: 18 VTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + ++I + + A Sbjct: 77 --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ + +D Sbjct: 132 AMIATSAALAVSGI-------------PFSGPIGAARVGYINGEYVLNPGQTQRKDSQMD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKD 236 T+S ++ +E ++ + K I + L ++ Sbjct: 179 LVVAGTESAVLMV---ESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVRE 227 >gi|171695618|ref|XP_001912733.1| hypothetical protein [Podospora anserina S mat+] gi|170948051|emb|CAP60215.1| unnamed protein product [Podospora anserina S mat+] Length = 277 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 87/255 (34%), Gaps = 26/255 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------------- 46 +R+ GR+ N++R I R A+GS ++ G T ++ T + Sbjct: 13 LRVDGRRWNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGASG 72 Query: 47 VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106 +K + + S+ + GR R+ E+Q + L + + Sbjct: 73 GAGSGGQSKDAEVVVNIVIAGFSSVD----RKRRGRGDKRTLEMQFTLSNTLAATLHTHL 128 Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166 QI I V+ DG A I A +A D M D G + + Sbjct: 129 FPHSQINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTACTA-----GSTSTYAA 183 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 P++DL++ E+ + + +S +V + + ML + D Sbjct: 184 NDEGADPLLDLNHQEEQELPGLTVATLGESDKVVALVC---ESRVQISRLEGMLAVGVDG 240 Query: 227 IADLIKLQKDVISNE 241 + ++ VI + Sbjct: 241 CKQVREILDQVIKAQ 255 >gi|323697461|ref|ZP_08109373.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. ND132] gi|323457393|gb|EGB13258.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio desulfuricans ND132] Length = 753 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHG- 57 +R+ GR +R +S+ V + GS L + G+T L TATL + Sbjct: 321 LRIDGRNTTTVRPLSIEVGVLQQTHGSALFRRGETCSLATATLGSTRDEQRYDSLLGDAT 380 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G S R+ G + RAL V+ I + Sbjct: 381 KRFMLHYNFPPYCVGEARMLRGPSRREVGHG----ALAERALTPVIPDPENFPFTIRVVS 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A++ GA ++L D + VA I+ G+ Sbjct: 437 EIMESNGSSSMASVCGATLSLMDAGV-------------PISDPVAGIAMGLCKEGDQYF 483 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + A QD L AK+ ++ Sbjct: 484 VLTDILGDEDALGDMDFKVAGTRDG-ITAIQMDIKIAGIPQDVLKKALQQAKEARTHILD 542 Query: 233 LQKDVISNE 241 +VI+ Sbjct: 543 HMAEVIAKP 551 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 37/240 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +I+L ++ A G+ + GDT +L TA + +T Y + + G Sbjct: 19 DITLETGKYARQASGAVTISSGDTTVLVTAV----TQPLAEDRGFFPLTCNYQEMAYAAG 74 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N +RE GR R + R+I R +R + QII V+ AD Sbjct: 75 RVPGNYFRREV--GRPSERETLVSRLIDRPIRPLFAKGFTDEVQIIAT--VLSADKRVNP 130 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY--GEDS 183 A+TGA A H G + G + ++ Y E+ Sbjct: 131 DVLALTGASAACH-------------ISKMPFLGPIVGARVGYVDNEFVLYPSYKGIEER 177 Query: 184 TIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 + N + + +V V+G S+D L +++ L +Q + + +V Sbjct: 178 SS---LNLIFAATRDAMVMVEGGG--NFVSEDLVADALAWGHEQVRPLFDIQDE-LREKV 231 >gi|264677193|ref|YP_003277099.1| 3' exoribonuclease [Comamonas testosteroni CNB-2] gi|262207705|gb|ACY31803.1| 3' exoribonuclease [Comamonas testosteroni CNB-2] Length = 747 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L +TL + + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNKFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 74/232 (31%), Gaps = 31/232 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 +++ +++ A G+ LV DT +L T + + + T G +P Sbjct: 18 VTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + ++I + + A Sbjct: 77 --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ +D Sbjct: 132 AMIAVSAALA-------------VSGLPFNGPIGAARVGYINGEYVLNPGQTLRKDSQMD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKD 236 T+S ++ +E ++ + K I + L ++ Sbjct: 179 LVVAGTESAVLMV---ESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVRE 227 >gi|241763284|ref|ZP_04761341.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii 2AN] gi|241367559|gb|EER61846.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii 2AN] Length = 747 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T L TL + + G Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLGTERDAQRIDALAGEYED 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL +V+ + + + Sbjct: 377 RFMLHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAAVLPTKEEFPYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G ++L D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARIHILGK 538 Query: 234 QKDVISN 240 +D + Sbjct: 539 MQDAMGE 545 Score = 69.0 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 + + +++ A G+ LV DT +L T T + + + T G +P Sbjct: 18 VIMETGEIARQAGGAVLVNIDDTVVLATVVASKTAKAGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + ++I + + A Sbjct: 77 --GSFFKREA---KPSEHETLTSRLIDRPIRPLFPEGFFNDVHVVIHTVSLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ +D Sbjct: 132 AMIATSAALAISGI-------------PFNGPIGAARVGYINGEYVLNPGQTARKNSQMD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237 T++ ++ +E S++ + I + +L ++ Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHQQGNVAINAIHELVREA 228 >gi|221068616|ref|ZP_03544721.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni KF-1] gi|220713639|gb|EED69007.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni KF-1] Length = 747 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L +TL + + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL + + I + + Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G +++ D M K HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNKFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538 Query: 234 QKDVISN 240 ++ + Sbjct: 539 MQEAMGE 545 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 31/232 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 +++ +++ A G+ LV DT +L T + + + T G +P Sbjct: 18 VTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KREA + R+I R +R + ++I + + A Sbjct: 77 --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISLNPEVDADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ + +D Sbjct: 132 AMIAVSAALA-------------VSGLPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKD 236 T+S ++ +E ++ + K I + L ++ Sbjct: 179 LVVAGTESAVLMV---ESEAQQLPEEVMLGAVVFGHEQGKIAIDAIHDLVRE 227 >gi|315223620|ref|ZP_07865474.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea F0287] gi|314946401|gb|EFS98396.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea F0287] Length = 735 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 20/245 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR Q+R I A GS + G+T LTT TL E V Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ ++ + + Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKRMIPED--CPYTVRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + +AL D M + + + G A+ + D Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAV---------LSD 482 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + LN A++ ++ D Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541 Query: 237 VISNE 241 I+ Sbjct: 542 TIAKP 546 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 28/236 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A+G+ +V+ G+ LL T + + + A G Sbjct: 16 RTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGRF 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE R + R++ R LR + Q++I +I D Sbjct: 76 P---GGFFKRET---RPSDQEILTMRLVDRVLRPLFPKDYHAETQVMI--QLISHDENV- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G ++ + G + G IV+ + D Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQLEASD 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D V + V+G E S+ + A + I I+ Q ++ +V Sbjct: 177 IDI-MVGASKDFVAMVEG--EMDEVSEKDMAEAIKFAHEAIKPHIEAQLR-LAEKV 228 >gi|307825114|ref|ZP_07655335.1| polyribonucleotide nucleotidyltransferase [Methylobacter tundripaludum SV96] gi|307733862|gb|EFO04718.1| polyribonucleotide nucleotidyltransferase [Methylobacter tundripaludum SV96] Length = 692 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+ +++R I++ V GS L G+T L ATL + I + G Sbjct: 312 RIDGRELDKIRPITVRTGVLPRTHGSALFTRGETQALVVATLGTQRDAQIIDALAGEYKE 371 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ I + + Sbjct: 372 PFMLHYNFPPYSVGETGFVGSPKRREIGHG----RLAKRGVAAVLPNMEEFPYTIRVVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 428 VTESNGSSSMASVCGSSLALMDAGV-------------PIKSPVAGIAMGLIKEGDSFAV 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + + + + L+ AK ++ Sbjct: 475 LSDIMGDEDHLGDMDFKVAGSVDG-ITALQMDIKIDGITAEIMKSALDQAKHGRLHILGE 533 Query: 234 QKDVISN 240 +S Sbjct: 534 MNKALST 540 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 51/174 (29%), Gaps = 29/174 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + L +++ A+G+ ++ T LL T +T Y + Sbjct: 13 RLVKLETGEIARQADGAVMIDVDGTTLLVTVVG----KKQASGGDFFPLTVNYQEKAYAA 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + R+I R +R + QII + + Sbjct: 69 GKIPGGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGYTNEVQIIATVVSLNPE---- 121 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQL--SQVLKGHVAAISCGMLCGYPIVDLD 178 D ++ G V A + G G I++ Sbjct: 122 -----------VDPEIPALLGASAALAVSGLPFNGPVGAATVGYKDGEYILNPT 164 >gi|288574757|ref|ZP_06393114.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570498|gb|EFC92055.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 749 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 95/251 (37%), Gaps = 30/251 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEK--VPMWIRNTK 55 R GR+ +++R +S V GS + G+T L TAT E+ + N Sbjct: 312 RADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLGEDDQLIDGLKHNEP 371 Query: 56 HGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y P S G R R G R + RAL ++ + + Sbjct: 372 NKSFLLHYNFPPYSVGEVRPMRG-----PGRREIGHGALAERALTPIIPDDTEFPYVVRV 426 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 D+++++G + A+I G +AL +K HVA I+ G++ Sbjct: 427 VSDILESNGSSSQASICGGSLALMSAGV-------------PIKRHVAGIAMGLIKEGDD 473 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G + +Q + +++ L AKD + Sbjct: 474 VVVLTDIQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITREILKQALGQAKDARMAI 532 Query: 231 IKLQKDVISNE 241 + + + ISN Sbjct: 533 LDVMEQAISNP 543 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 83/229 (36%), Gaps = 31/229 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 E+ V+K A GS + GDT +LTTA E + + G +P Sbjct: 13 ELVFETGKVAKQANGSVWARQGDTVILTTACMTDKPREGLDFFPLLVDFEERFYSAGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R++RS+ + ++ + Sbjct: 73 ---GGFIKRE---GRPSQTAILSARVIDRSIRSLFESWMRHDVHVVSTVLSVDQHNPPNI 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDSTI 185 AI A AL G V A+ G + G +V+ E+S++ Sbjct: 127 LAINAASAAL-------------TISDIPWGGPVGAVRIGYIDGSLVVNPTEEMMENSSL 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + V S I V+ A+ +D + LA+ I ++ LQ Sbjct: 174 E---LVVSGHSDGITMVEAGAQEVP--EDLLVDAMELAQGEIKRIVDLQ 217 >gi|304414101|ref|ZP_07395469.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella insecticola LSR1] gi|304283315|gb|EFL91711.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella insecticola LSR1] Length = 698 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ R ++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDDRGKDTIRSLDMRTGVLPRTHGSALFTRGETQALVTATLGTARDAQSLDELIGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ RAL +V+ + I + Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRALLAVMPSLDDCPYTVRIVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K HVA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKEHVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + ++ L+ AK ++ ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRTG-ITALQMDIKIEGITEKIMEKALHQAKSALSHILDI 536 Query: 234 QKDVISNE 241 ++ I Sbjct: 537 MEEAIKKP 544 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 27/217 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 +++ + + A + +V DT + T +++ +T Y + G Sbjct: 16 VTIETGMMARQANSAVMVSVDDTAVFVTVVGQKQAKP---GQNFFPLTVNYQERSYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 N +RE GR I R+I R +R + L QII I + Sbjct: 73 IPGNFFRRE---GRPSEGETLISRLIDRPIRPLFPAGFLNEVQIIATVVSINKEVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + I++ E +D Sbjct: 130 AMIGASAALS-------------LSDIPFNGPIGAARVGFINDQYILNPTTTELVESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 T++ ++ +E S++ ++ + Sbjct: 177 LVVAGTNAAVLMV---ESEAKMLSEEQMLGAVSFGHE 210 >gi|262066017|ref|ZP_06025629.1| polyribonucleotide nucleotidyltransferase [Fusobacterium periodonticum ATCC 33693] gi|291380267|gb|EFE87785.1| polyribonucleotide nucleotidyltransferase [Fusobacterium periodonticum ATCC 33693] Length = 699 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKSDEQLIDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RALR V+ I + + Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPSEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A + ++++ Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARQQILEV 545 Query: 234 QKDVISNE 241 + IS Sbjct: 546 MNNTISKP 553 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 29/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +S+ + G+ ++++GDT +L+TA + + + G Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLTVDYVEKFYSTGKF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + I R+I R +R + + + I V+ D Sbjct: 74 P---GGFNKRE---GRPSTNATLIARLIDRPIRPMFPDGF--NYDVHIVNTVLSYD---- 121 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 V+ D L + G VA ++ G G I++ E + Sbjct: 122 -------EVSTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESE 174 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D + T ++VE A ++ + A D I + + Q++ Sbjct: 175 LDLSVAGTKDAVNMVE----AGAKELDEETMLKAIMFAHDNIKKICEFQEE 221 >gi|157364256|ref|YP_001471023.1| polynucleotide phosphorylase/polyadenylase [Thermotoga lettingae TMO] gi|187611328|sp|A8F725|PNP_THELT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157314860|gb|ABV33959.1| Polyribonucleotide nucleotidyltransferase [Thermotoga lettingae TMO] Length = 710 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 28/242 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKHG 57 RL R+ +R I+ + GS L G+T + A ++E++ + Sbjct: 317 RLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGAPMDEQIIDSLLEEGTK 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG S R+ G + RAL+ V+ I I + Sbjct: 377 RFMLHYNFPPFSTGEVKPLRGPSRREIGHGH----LAERALKFVLPDEDRFPYTIRIVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 +++++G + A + +AL D + HVA ++ G++ + Sbjct: 433 ILESNGSSSMATVCSGSLALMDAGV-------------PISKHVAGVAMGLILEKDSQIV 479 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I Q + + S D LN AK+ A L L Sbjct: 480 LTDILGAEDHWGDMDFKVAGTRDG-ITAFQMDCKVSGVSADLLERALNQAKE--ARLYVL 536 Query: 234 QK 235 +K Sbjct: 537 EK 538 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 33/236 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 RE + V+K A G+ + + GDT +L TA + + + +T E+ Sbjct: 11 REFIVEHGKVAKQANGAVVARIGDTTVLATAVMSDSA---VEGIDFVPLTVEFQERFYAA 67 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G +KRE G+ + R I R +R + Q+++ + Sbjct: 68 GKIP---GGFIKRE---GKPSEMAILSARTIDRPIRPLFPKHLRNEVQVVVTVISTDSVN 121 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 + A +AL+ G VAA+ G++ G ++ + Sbjct: 122 TPDIVGVFAASLALN-------------ISDIPFNGIVAAVRVGLVDGKIVLFPTEDQLQ 168 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +D T+ I V+G A+ S+ L A D I +I +K+++S Sbjct: 169 KSLLDIVVAGTED-TITMVEGEAKE--VSESQMLQALLKAHDAIKQIIDFEKEILS 221 >gi|125972939|ref|YP_001036849.1| polynucleotide phosphorylase/polyadenylase [Clostridium thermocellum ATCC 27405] gi|281417150|ref|ZP_06248170.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum JW20] gi|187610261|sp|A3DCH7|PNP_CLOTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|125713164|gb|ABN51656.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum ATCC 27405] gi|281408552|gb|EFB38810.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum JW20] Length = 700 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 29/236 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ +++R +S + GS L G T +L++ TL + I + Sbjct: 312 RVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDVQILDGIDTEETK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL V+ I + + Sbjct: 372 RYMHHYNFPGFSVGEAKSSRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRVVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173 V+ ++G T ++ G+ +AL D +K VA IS G++ Sbjct: 428 VLMSNGSTSQGSVCGSTLALMDAGV-------------PIKKPVAGISAGLVVDENNPDR 474 Query: 174 ---IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +D+ ED D+D T G I +Q + +++ L + Sbjct: 475 FVTFMDIQGIEDFFGDMDFKVAGTKDG-ITAIQVDIKIDGLTEEIIKQAFELTRKG 529 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 30/227 (13%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGML 66 R +++ A GS LV++GDT +L +AT E V + + + G + Sbjct: 12 RTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEERLYAVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R LR + I+ + D Sbjct: 72 P---GGFIKRE---GKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNSPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +A+ G V A+ G++ G I++ + Sbjct: 126 LAALLGSSIAVS-------------ISDIPFNGPVGAVILGLIDGEVIINPTEKQKEISQ 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + T + IV ++ A D ML+ K ++ K+ Sbjct: 173 MYVTLAGTRN-KIVMIEAGANEVP---DEV--MLDAIKKGHEEIKKI 213 >gi|157692352|ref|YP_001486814.1| polynucleotide phosphorylase/polyadenylase [Bacillus pumilus SAFR-032] gi|187470936|sp|A8FDD7|PNP_BACP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157681110|gb|ABV62254.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus SAFR-032] Length = 705 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +Q+R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ + + Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + S+D L AK +++ Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTSKG-VTALQMDIKIDGLSKDILEEALQQAKKGRMEILD 536 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K + + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ + + D+ Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ ++ + I LI+ Q++++ Sbjct: 176 NLVVAGTKDA-INMVEAGADEVP--EETMLEAIMYGHQEIKRLIEFQEEIVK 224 >gi|256820519|ref|YP_003141798.1| polynucleotide phosphorylase/polyadenylase [Capnocytophaga ochracea DSM 7271] gi|256582102|gb|ACU93237.1| Polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea DSM 7271] Length = 735 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 20/245 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR Q+R I A GS + G+T LTT TL E V Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ ++ + + Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKRMIPED--CPYTVRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + +AL D M + + + G A+ + D Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAV---------LSD 482 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + LN A++ ++ D Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541 Query: 237 VISNE 241 I+ Sbjct: 542 TIAKP 546 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 28/236 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A+G+ +V+ G+ LL T + + + A G Sbjct: 16 RTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGRF 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE R + R++ R LR + Q++I +I D Sbjct: 76 P---GGFFKRET---RPSDQEILTMRLVDRVLRPLFPKDYHAETQVMI--QLISHDENV- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G ++ + G + G IV+ + D Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQLEASD 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D V + V+G E S+ + A + I I+ Q ++ +V Sbjct: 177 IDI-MVGASKDFVAMVEG--EMDEVSEKDMAEAIKFAHEAIKPHIEAQLR-LAEKV 228 >gi|159903819|ref|YP_001551163.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9211] gi|226702676|sp|A9BBJ7|PNP_PROM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|159888995|gb|ABX09209.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 722 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 28/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A GS L++ GDT +L TAT + +Y Sbjct: 13 REIRLTTGRYAPQAGGSVLIECGDTAVLVTAT----QSPGREGADFLPLICDYEERLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 R G+ ++RE GR R+ I R+I R LR + Q++ C + + Sbjct: 69 GRIPGSFMRRE---GRPPERATLISRLIDRPLRPLFPSWMRDDIQVVATCLSLDERVPSD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+T + +A G +AA+ G+L +++ + E D Sbjct: 126 VLAVTASSMATLLA-------------EIPFYGPMAAVRVGLLGDDFVLNPSFREIERGD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T G +V ++ A + S+ ++ + + +LIK Q+ ++ Sbjct: 173 LDLVVAGTPDG-VVMIEAGANQ--LSEQDVIEAVDFGYEAVTELIKAQQSILKE 223 Score = 96.7 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 29/250 (11%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TK 55 R+ GR +++R+I + K GS L + G T +L+TATL + + Sbjct: 323 RVDGRALDEVRKIEAAAGILPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSSD 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P S G R+ G + RAL V+ + + Sbjct: 383 KTYIH-HYNFPPYSVGETRPMRTPGRREVGHG----ALAERALIPVLPPKESFPYVLRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 438 SEVLSSNGSTSMGSVCGSTIALLDAGV-------------PLKAPVSGAAMGLIKEGKEI 484 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T+ G I +Q + +N AK ++ Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKVTGLEVKTIADAINQAKPARTHIL 543 Query: 232 KLQKDVISNE 241 + + I Sbjct: 544 EKMNETIDKP 553 >gi|257457660|ref|ZP_05622827.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC 35580] gi|257445046|gb|EEV20122.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC 35580] Length = 703 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 19/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I+ V GS + G+T L TL +E+V I + Sbjct: 318 LRVDGRGLEDIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQVYDDIEGDRR 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G V R R+ G + R+L ++ I + Sbjct: 378 ENFILHYNFPPYSVGE-VGRLGTGRREIGHGH----LAHRSLMPMIPSREAFPYTIRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G ++L M+ + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGGTLSLLHAGVPMKKPVAGIAMGLITDGSRFAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + A S + L AK ++ + Sbjct: 484 ILGEEDHLGDMDFKVAGTAEG-ITGFQMDIKIAGVSAEIMKKALEQAKKGRLHILGIMNQ 542 Query: 237 VISNE 241 IS Sbjct: 543 TISKP 547 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 26/224 (11%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T ++K A G+ ++G T +L T T E + + G +P G Sbjct: 23 TGHLAKQANGAIYAQYGGTAVLATVCASSTAVEGLDYVPVTVDYNEKYYAAGKIP---GG 79 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KRE GR + + R+I R +R + R+I I I+ Sbjct: 80 FIKRE---GRPKDKEILVSRLIDRPMRPLF--EKAFGREIQI-----------VPTCISS 123 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + D L + + G VA L G +++ + + D++ Sbjct: 124 DMINPPDILAVIASSAAVVISDIPFNGPVAGARVAYLDGEFVINPTFSQIEKADMEIVVA 183 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T G I V+G A S++ L A + I + LQ + Sbjct: 184 GTAEG-ITMVEGGAHE--VSEEIMLKALEKAHEFIKAMCALQNE 224 >gi|194014349|ref|ZP_03052966.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC 7061] gi|194013375|gb|EDW22940.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC 7061] Length = 705 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +Q+R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ + + Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + S+D L AK +++ Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTSKG-VTALQMDIKIDGLSKDILEEALQQAKKGRMEILD 536 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K + + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ + + D+ Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ ++ + I LI+ Q++++ Sbjct: 176 NLVVAGTKDA-INMVEAGADEVP--EETMLEAIMYGHQEIKRLIEFQEEIVK 224 >gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira defluvii] gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira defluvii] Length = 705 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R GR +R I+ V A GS + G+T L TL + G Sbjct: 311 VRADGRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLAVVTLGTTDDEQRIDALEGEYM 370 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G + RAL+S++ + I Sbjct: 371 RTFMLHYNFPPFSVGEARPLRSPGRREVGHG----ALAERALKSIIPGKDKFPYTVRIVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIV 175 ++++++G + A + G +AL D +K VA I+ G++ G ++ Sbjct: 427 EILESNGSSSMATVCGGTLALLDAGV-------------PIKEPVAGIAMGLIKEGDQVL 473 Query: 176 ---DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D+ ED D+D T +G + +Q + + L AK ++ Sbjct: 474 VLSDILGLEDHLGDMDFKVTGTKNG-VTALQMDIKIGGITAGLMREALAQAKAGRLHILG 532 Query: 233 LQKDVISNE 241 ++ Sbjct: 533 CMAQALTEP 541 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 84/232 (36%), Gaps = 31/232 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R ++L ++K A+G+ +GDT +L TA + V + T G + Sbjct: 12 RRLTLETGRIAKQADGAIWATYGDTVVLATAVASQNAKPGVDFLPLTVDYQEKTYAAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R R+I R LR + Q+I V+ AD Sbjct: 72 P---GGYFKRE---GRPSEREVLTSRLIDRPLRPLFPEGYYFETQVIAS--VLSAD---- 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDST 184 + D + + + S G +A + G + G +V DL+ E S Sbjct: 120 -------KTGVSDVIGIIAASAALAVSSIPFNGPIAGVKIGRVNGQFVVNPDLETLETS- 171 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D + V+ + V + + + + LA I ++ ++ Sbjct: 172 ---DLHLVVAGTADAVMMVEAG-ANELPEATMLEAIELAHSEIKKIVAKIEE 219 >gi|256005694|ref|ZP_05430650.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum DSM 2360] gi|255990325|gb|EEU00451.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum DSM 2360] gi|316940825|gb|ADU74859.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum DSM 1313] Length = 700 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 29/236 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ +++R +S + GS L G T +L++ TL + I + Sbjct: 312 RVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDVQILDGIDTEETK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL V+ I + + Sbjct: 372 RYMHHYNFPGFSVGEAKSSRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRVVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173 V+ ++G T ++ G+ +AL D +K VA IS G++ Sbjct: 428 VLMSNGSTSQGSVCGSTLALMDAGV-------------PIKKPVAGISAGLVVDENNPDR 474 Query: 174 ---IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +D+ ED D+D T G I +Q + +++ L + Sbjct: 475 FVTFMDIQGIEDFFGDMDFKVAGTKDG-ITAIQVDIKIDGLTEEIIKQAFELTRKG 529 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 30/227 (13%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGML 66 R +++ A GS LV++GDT +L +AT E V + + + G + Sbjct: 12 RTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEERLYAVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R LR + I+ + D Sbjct: 72 P---GGFIKRE---GKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNSPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +A+ G V A+ G++ G I++ + Sbjct: 126 LAALLGSSIAVS-------------ISDIPFNGPVGAVILGLIDGEVIINPTEKQREISQ 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + T + IV ++ A D ML+ K ++ K+ Sbjct: 173 MYVTLAGTRN-KIVMIEAGANEVP---DEV--MLDAIKKGHEEIKKI 213 >gi|297828842|ref|XP_002882303.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp. lyrata] gi|297328143|gb|EFH58562.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp. lyrata] Length = 922 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 33/246 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56 R GR +++R I+ + A GS L G+T L TL +K + + ++ Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A S R+ G + RAL +++ I ++ Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGT----LAERALETILPSDDDFPYTIRVES 562 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 VI+++G + A++ G +AL D +K VA I+ GM+ Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGV-------------PVKCSVAGIAMGMVWDTEEFG 609 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D + G + Q + + + L AK Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAG 668 Query: 227 IADLIK 232 ++ Sbjct: 669 RRHILA 674 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 30/236 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68 REI + + + A + V G+T + T+ L + VP + ++ + + + R Sbjct: 97 REILVETGLMGRQASSAVTVTDGETIVYTSVCLAD-VPSEPSDFLPLYVHYQERFSAVGR 155 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 ++G KRE GR I R+I R LR + QI+ V+ DG Sbjct: 156 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMPKGFYNETQIL--SWVLSYDG----- 205 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + D L +A + G++ G IV+ E +D Sbjct: 206 ------LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLD 259 Query: 189 ANFVMTDSGHIVEVQGSAERAT--FSQDHFFAMLNLAKDRIA-DLIKLQKDVISNE 241 TD+ + + E + ++ + + +D + I + +V++ + Sbjct: 260 LFLAGTDTAIL-----TIEGYSNFLPEEMLLEAVKVGQDAVQATCIAI--EVLAKK 308 >gi|89898059|ref|YP_515169.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila felis Fe/C-56] gi|123483690|sp|Q255L4|PNP_CHLFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89331431|dbj|BAE81024.1| polyribonucleotide nucleotidyltransferase [Chlamydophila felis Fe/C-56] Length = 694 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R GR +R IS+ GSCL G+T + T E + + Sbjct: 313 LRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAMAQRYEDLNGEGL 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL + A I I+ Sbjct: 373 AKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHALPDPAKFPYTIRIES 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G +AL D +K +A I+ G++ Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGV-------------PIKTPIAGIAMGLILDDDHVT 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D G I Q + + + A L AK ++++ Sbjct: 476 ILSDISGLEDHLGDMDFKVAGNAEG-ITAFQMDIKVEGITPEIMQAALAQAKSGRQNILE 534 Query: 233 LQKDVISNE 241 K +++ Sbjct: 535 TMKATLASP 543 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 80/231 (34%), Gaps = 34/231 (14%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ L + +T + + ATLEE V + ++ + ++ G Sbjct: 18 FETGKIARQANGAVLARMQETWVFSSVCAATLEEPVDFLPLRVDYQE---KFSSIGKTLG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR R R+I R++R + + QI+ DG T A Sbjct: 75 GFIKRE---GRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVW--SYDGVTLPDPIA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I G AL VA + G + +V+ E ++ Sbjct: 130 ICGVSAALA-------------ISDIPQINIVAGVRVGFINNTWVVNPTKAEMDVSRMEL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL----QKD 236 T+ I+ ++G F+++ + I + K QK Sbjct: 177 VLAGTEKA-ILMIEG--HCDFFTEEQVIEAIEFGHKHIVTICKAIEDWQKQ 224 >gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus ferrooxydans PV-1] Length = 705 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 20/230 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR NQ+R I V GS L G+T L T TL + M + + G Sbjct: 326 RIDGRATNQVRAIDCQVGVLPRTHGSALFTRGETQALVTITLGTESDMQMTESLEGVAKQ 385 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIIDC 116 Y P S G + G G R R+ R + +V+ + G I Sbjct: 386 RFMLHYNFPPYSVGEARRF----GPPGRREIGHGRLARRGVEAVLPSMEKFG-YAIRSVS 440 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A++ G +AL D ++ + +L+ A+ + D Sbjct: 441 EITESNGSSSMASVCGTSLALMDAGVPVKAAVAGVAMGLILEQDGYAV---------LTD 491 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED D+D T G + +Q + +++ L A Sbjct: 492 ILGDEDHLGDMDFKVAGTREG-VTTLQLDIKIGGLTREIMQEALAQAHAG 540 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 34/234 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R IS V++ A GS L + GD + AT K P ++ +T Y + Sbjct: 22 RTISFETGRVARQAGGSILAQVGDVVVHVAAT-CAKQP--LQGVDFMPLTVHYQEKTYAA 78 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + R+I R +R + Q+I + Sbjct: 79 GRFLGGFFKRE---GRPSEKETLTSRLIDRPIRPLFPKGYFHETQVIATVMSVDEGTNPD 135 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI G AL +AA G++ G I++ Y + + Sbjct: 136 IVAINGVSAALA-------------ISDIPFAEPIAASRVGLIDGEFILNPSYEQVAESS 182 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKL 233 +D T ++ ++ +E S++ ++ + I +L+KL Sbjct: 183 LDLIVAGTRDA-VLMIE--SEAKELSEEQMIDAISFGQAGYQPVLDAIEELVKL 233 >gi|30678905|ref|NP_187021.2| RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/ RNA binding / nucleic acid binding / polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] gi|25991185|gb|AAN76771.1|AF450480_1 polynucleotide phosphorylase [Arabidopsis thaliana] gi|332640453|gb|AEE73974.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] Length = 922 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 33/246 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56 R GR +++R I+ + A GS L G+T L TL +K + + ++ Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A S R+ G + RAL +++ I ++ Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGT----LAERALETILPSDDDFPYTIRVES 562 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 VI+++G + A++ G +AL D +K VA I+ GM+ Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGV-------------PVKCSVAGIAMGMVWDTEEFG 609 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D + G + Q + + + L AK Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAG 668 Query: 227 IADLIK 232 ++ Sbjct: 669 RRHILA 674 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 30/236 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68 REI + + + A + V G+T + T+ L + VP + ++ + + + R Sbjct: 97 REILVETGLMGRQASSAVTVTDGETIVYTSVCLAD-VPSEPSDFLPLYVHYQERFSAVGR 155 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 ++G KRE GR I R+I R LR + QI+ V+ DG Sbjct: 156 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMPKGFYNETQIL--SWVLSYDG----- 205 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + D L +A + G++ G IV+ E +D Sbjct: 206 ------LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLD 259 Query: 189 ANFVMTDSGHIVEVQGSAERAT--FSQDHFFAMLNLAKDRIA-DLIKLQKDVISNE 241 TD+ + + E + ++ + + +D + I + +V++ + Sbjct: 260 LFLAGTDTAIL-----TIEGYSNFLPEEMLLQAVKVGQDAVQATCIAI--EVLAKK 308 >gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1] gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1] Length = 706 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R ++ + GS L G T L T A + +V + + Sbjct: 315 LRPDGRGLDEIRPLASQVGLLPRTHGSGLFTRGQTQALSICTLGAMGDVQVIDGLGLEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL ++ I I Sbjct: 375 KRFMHHYNFPLFSVGE----TGPIRGPGRREIGHGALGERALEPIIPNEKDFPYTIRIVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIQSGEHYS 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + S++ L AK Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIEGLSREILEEALQQAKSG 530 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 96/233 (41%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ ++++GDT +L+TAT + + + + G +P Sbjct: 15 RKLTVEYGQLAKQANGAVMIRYGDTAVLSTATASKQPKPLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + Q+I + D + Sbjct: 75 ---GGFIKRE---GRPSERAVLTSRLIDRPIRPLFADGFRNEVQVISMVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G++ G I++ + + ++ Sbjct: 129 AAMFGSSLAL-------------TVSDIPFEGPIAGVQVGLIDGEFIINPNVDQLEKSEI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T I V+ A+ ++ + + I LI Q+++ + Sbjct: 176 NLIVAGTKDA-INMVEAGADEVP--EETMLEAIMFGHEEIKRLISFQEEIAAQ 225 >gi|317052392|ref|YP_004113508.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum indicum S5] gi|316947476|gb|ADU66952.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum indicum S5] Length = 722 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 20/242 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTKH 56 R+ GR N++R IS+ GS L G+T + T + E+ V + + Sbjct: 316 RVDGRSLNEVRPISIAPSFLPRTHGSVLFTRGETQAIVVTTLGTVSDEQFVEN-LEGERR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G G R + RA+ +V+ I I Sbjct: 375 SNYMFHYNFPPYCVGE----AGFLRSPGRREIGHGALAKRAIEAVLPQGEDFPYTIRIVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A++ GA +AL D ++ + + +L+G A+ + D Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPIKGAVSGIAMGLILEGDRFAV---------LTD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + + + A + A ++ + Sbjct: 482 ILGIEDHLGDMDFKVAGTSRG-ITSLQMDIKVEGITLEIMKAAIEQANGGRMHILDRMNE 540 Query: 237 VI 238 + Sbjct: 541 AL 542 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 86/230 (37%), Gaps = 31/230 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 I + V++ A + +V+ GD +L TA +E + + + G +P Sbjct: 13 IEMQTGQVARQASAAVVVRQGDNVILVTAVSNNEPKEGIDFFPLTVNYIEKRYSSGRIP- 71 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--R 126 G KRE G I R+I R LR + Q+I V+ +DG T Sbjct: 72 --GGFKKRE---GMPSDDETLISRLIDRPLRPLFPDGYFNETQVIAT--VMSSDGETPAD 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA ALH G + A G + G +++ Y + D Sbjct: 125 VLAMYGAATALH-------------ISDVPFNGPLGACRIGRIDGQFVLNPTYAQIEQSD 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D + T I+ ++ A+ + QD A+ + + L+ Q+ Sbjct: 172 MDISLAATRDA-ILMIEAGAKEVS-DQDILDAV-AFGQREMGRLLDAQEQ 218 >gi|7413616|emb|CAB85703.1| putative polynucleotide phosphorylase [Arabidopsis thaliana] Length = 922 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 33/246 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56 R GR +++R I+ + A GS L G+T L TL +K + + ++ Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A S R+ G + RAL +++ I ++ Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGT----LAERALETILPSDDDFPYTIRVES 562 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 VI+++G + A++ G +AL D +K VA I+ GM+ Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGV-------------PVKCSVAGIAMGMVWDTEEFG 609 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D + G + Q + + + L AK Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAG 668 Query: 227 IADLIK 232 ++ Sbjct: 669 RRHILA 674 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 30/236 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68 REI + + + A + V G+T + T+ L + VP + ++ + + + R Sbjct: 97 REILVETGLMGRQASSAVTVTDGETIVYTSVCLAD-VPSEPSDFLPLYVHYQERFSAVGR 155 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 ++G KRE GR I R+I R LR + QI+ V+ DG Sbjct: 156 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMPKGFYNETQIL--SWVLSYDG----- 205 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + D L +A + G++ G IV+ E +D Sbjct: 206 ------LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLD 259 Query: 189 ANFVMTDSGHIVEVQGSAERAT--FSQDHFFAMLNLAKDRIA-DLIKLQKDVISNE 241 TD+ + + E + ++ + + +D + I + +V++ + Sbjct: 260 LFLAGTDTAIL-----TIEGYSNFLPEEMLLQAVKVGQDAVQATCIAI--EVLAKK 308 >gi|315638718|ref|ZP_07893892.1| polyribonucleotide nucleotidyltransferase [Campylobacter upsaliensis JV21] gi|315481342|gb|EFU71972.1| polyribonucleotide nucleotidyltransferase [Campylobacter upsaliensis JV21] Length = 736 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR N++R I + + A GSCL G T L ATL + + +N Sbjct: 358 RADGRNLNEVRAIEIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMVDLLSEKNPI 417 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL VD + + + Sbjct: 418 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVVRLV 471 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + VL+ + AI + Sbjct: 472 SEILESNGSSSMATVCGGSLALRAAGVPSIKLVAGVAMGLVLEDNDYAI---------LT 522 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I +Q + ++ L A++ ++ L + Sbjct: 523 DIMGLEDHDGDMDFKVAGTKDG-ITALQMDIKLGGIDENILKNALYQAREARLHILDLME 581 Query: 236 DV 237 + Sbjct: 582 EA 583 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 82/241 (34%), Gaps = 41/241 (17%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75 V+K A GS L++ G + +L T E+K +T +Y + G +K Sbjct: 38 VAKQAAGSVLMRVGKSVVLATVAREDKQ----VEEDFLPLTVQYIEKAYAVGRIPGGYIK 93 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE + G R+I R+LR + QI++ + + ++ A V Sbjct: 94 RET---KPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADDEVDLQVMSLNAASV 150 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL+ +K V + + +++ + +D +V Sbjct: 151 ALYLSGI-------------PIKAPVCGVRIARINDEFVLNPSNSKLKESTLDL-YVAGV 196 Query: 196 SGHIVEVQGSA-----ERATFSQDHFFAML-----------NLAKDRIADLIKLQKDVIS 239 ++ ++ A E + F L L++D I + + K I Sbjct: 197 KDELLMIEMRALPSESEGEAMVETSFAEALAGTSIYEQVINELSEDEILQALSVAKKAIL 256 Query: 240 N 240 N Sbjct: 257 N 257 >gi|256072702|ref|XP_002572673.1| ribonuclease pH related [Schistosoma mansoni] gi|238657836|emb|CAZ28905.1| ribonuclease pH related [Schistosoma mansoni] Length = 258 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 75/200 (37%), Gaps = 17/200 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWIT 60 R+ GR+ N++R + S Y++G + G+T ++ + + IT Sbjct: 10 RVDGRRPNEIRRVDCQFG-SGYSDGIVFLHQGNTKVIASVVGPHAPRVKGDGTPDGATIT 68 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ P ++ + +R+ S + + + I V+ QI I +VIQ Sbjct: 69 CQFTKPPFASTSGERRKLSS--KDRSANDFATAIEEIFSCVIRTEKYPMSQIDIFLEVIQ 126 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 +DG A+ +AL D M V+A + G+ + DL Sbjct: 127 SDGSEFACAVNATTLALTDAGIEM-------------DCLVSAATVGLWGSHVFADLCRF 173 Query: 181 EDSTIDVDANFVMTDSGHIV 200 E++ V + H++ Sbjct: 174 EENPRISQLTVVCLPNVHLL 193 >gi|213961824|ref|ZP_03390090.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena Capno] gi|213955613|gb|EEB66929.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena Capno] Length = 744 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 20/245 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR Q+R I A GS + G+T LTT TL E V Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ ++ + + Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKRMIPED--CPYTVRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + +AL D M + + + G A+ + D Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAV---------LSD 482 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + LN A++ ++ D Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541 Query: 237 VISNE 241 I+ Sbjct: 542 TIAQP 546 Score = 78.6 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 27/228 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A+G+ +V+ G+ LL T + + + A G Sbjct: 16 RTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGRF 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KREA R + R++ R LR + Q++I +I D Sbjct: 76 P---GGFFKREA---RPSDQEILTMRLVDRVLRPLFPKDYHAETQVMI--QLISHDENV- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G ++ + G + G IV+ + D Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQLEASD 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 +D V + V+G E S+ + A + I I+ Q Sbjct: 177 IDI-MVGASKDFVAMVEG--EMDEVSEKDMAEAIKFAHEAIKPHIEAQ 221 >gi|224476402|ref|YP_002634008.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus carnosus subsp. carnosus TM300] gi|254782735|sp|B9DPE0|PNP_STACT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222421009|emb|CAL27823.1| polyribonucleotide nucleotidyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 701 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A E ++ + + Sbjct: 318 VRPDGRKPDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGAMSEYQLIDGLGTEEE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RALR ++ + + I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTKDFPYTVRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTRDDNYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T+ G I +Q + +++ L A+ ++ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTEKG-ITAIQMDIKIDGLTREIIEEALEQARVGRLTILN 539 Query: 233 LQKDVISNE 241 + I Sbjct: 540 HMLETIDQP 548 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +S+ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RPLSIETGQMAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLMVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + QII D Sbjct: 75 ---GGFKKRE---GRPADEATLTARLIDRPIRPLFPKGYRHDVQIINMVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGEYVINPTVEQKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+++I Sbjct: 176 DLEVAGHRDAVNMVE----AGASEITEKEMLDAIFFGHEEIKRLVDFQQEII 223 >gi|149204437|ref|ZP_01881404.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035] gi|149142322|gb|EDM30369.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035] Length = 713 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R I + GS L G+T L TL + HG + Sbjct: 318 RIDGRRLDEIRPIVCETGLLPRTHGSSLFTRGETQALVVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G ++ RAL++V+ + + + + Sbjct: 378 NFLLHYNFPPYSVGEAGRVGAPGRREIGHG----KLAWRALQAVLPPATDFPYTVRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKTSVAGVAMGLVLEEDGSFA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + A + + L AK ++ Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTADG-ITSLQMDIKVAGITPEIMKKALEQAKAGRLHILG 539 Query: 233 LQKDVISN 240 +S Sbjct: 540 EMNKALSG 547 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 33/223 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A+G+ + G+T ++ T + + + G +P Sbjct: 16 LTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++ C V+ D Sbjct: 75 --GGFFKREA---RPSEKETLTARLIDRPIRPLFVPGFKHET--LVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182 A+ AL G +A G + G I++ + + Sbjct: 128 IVALIATSAALTISGA-------------PFMGPIAGCRVGFVDGEYILNPEIDDMHDLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + + + V+ + V + S E +++ + A + Sbjct: 175 NNPEQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAVTFAHE 216 >gi|89070994|ref|ZP_01158217.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus HTCC2516] gi|89043457|gb|EAR49672.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus HTCC2516] Length = 710 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R I ++ GS L G+T L TL I + HG + Sbjct: 318 RIDGRALDEVRPIVSETQILPRTHGSALFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPPATDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + VL+ S G+ + D+ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLED---DGSYGI-----LTDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A + + L AK ++ Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKKALEQAKAGRMHILGEMAKA 544 Query: 238 ISN 240 I+ Sbjct: 545 ITE 547 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A+G+ + G+T ++ T +E + + G +P Sbjct: 16 LTLETGKIARQADGTVIATLGETSVMAAVTFAKTQKEGQDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182 A+ A AL G +A G G +++ + Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAGCRVGYEDGEYVLNPTVDDMQGLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D + V+ + V + S E +++ + A ++I ++ L Sbjct: 175 NNPDQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAVTFAHEQIQPVVDL 224 >gi|304310511|ref|YP_003810109.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium HdN1] gi|301796244|emb|CBL44452.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium HdN1] Length = 701 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 33/255 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHG 57 R+ GR +R IS+ GS L G+T + TATL ++ + Sbjct: 316 RIDGRDNKTVRPISIEVGNLARTHGSALFTRGETQAIVTATLGSMRDSQTVDYLEGARSE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R +++V+ ++ I + + Sbjct: 376 PFMLHYNFPPFCVGETGGQLGPKRREIGHG----RLARRGIQAVLPENSAFPYAIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G+ +AL D LK VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PLKAPVAGIAMGLVKEGDRFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR------- 226 + D+ ED D+D T G + +Q + +++ LN A+D Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIDGITEEIMEVALNQARDGRLHILGE 537 Query: 227 IADLIKLQKDVISNE 241 +A +I+ + +S + Sbjct: 538 MAKVIEASRPALSRD 552 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 73/232 (31%), Gaps = 31/232 (13%) Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG-- 71 +L +++ A G+ LV +L T ++K + +T Y ++G Sbjct: 17 TLETGKIARQATGAVLVSTAQVAVLVTVVGKKKADP---SKDFFPLTVNYQEKTYASGRI 73 Query: 72 --NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 KRE G+ + R+I R LR + QII AA Sbjct: 74 PGGYFKRE---GKPSEKETLTSRLIDRPLRPLFPEGFRNEVQIIATVLSTDKKTDPDIAA 130 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + GA AL G + A G + G +++ Y +D Sbjct: 131 LVGASAALAISGI-------------PFNGPIGAARVGFVDGSYVLNPCYAALEKSSLDL 177 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237 TD ++ +E ++D + I + K+V Sbjct: 178 VVAGTDQAVLMV---ESEAKELTEDQMLGAVLYGHQEMQVAIEAINAFAKEV 226 >gi|319760252|ref|YP_004124190.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia vafer str. BVAF] gi|318038966|gb|ADV33516.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia vafer str. BVAF] Length = 697 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 95/255 (37%), Gaps = 33/255 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +RL GR ++ +REI + V GS L G+T L TL + + + Sbjct: 315 LRLDGRSQDMIREIDIKIGVLPRTHGSALFTRGETQALVAVTLGTERNAQNLDELTGDRV 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G A R+ G R+ R + +V+ S I + Sbjct: 375 DRFLMHYNFNPYCVGEIGIVGAPKRREIGHG----RLAKRGMLAVMPDSNEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A+I GA +AL D +K VA ++ G++ Sbjct: 431 EITESNGSSSMASICGASLALMDAGV-------------PIKESVAGVAMGLIKEENEFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN---LAKDRI-- 227 + D+ ED D+D G I +Q + + + L LA+ +I Sbjct: 478 VLSDIISDEDHIGDMDFKVAGGKQG-ITALQMDIKINGITYEIIHVALEKSKLARLKILN 536 Query: 228 --ADLIKLQKDVISN 240 +IK+ + IS Sbjct: 537 FMEQVIKIPRKNISE 551 Score = 71.7 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 26/205 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++ A S +V DT +L T ++V + + T G P G + Sbjct: 23 IARQANASVMVSMDDTTVLVTVVGSDQVKIDQDFFPLVVNYQERTYAAGKFP---GGFFR 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR R+I R +R + QII + AI GA Sbjct: 80 RE---GRPSESEILTARLIDRPIRPLFPKGFYNDVQIIATVVSVNPQISPDIVAIIGASA 136 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL G + G + +++ E + +D T+ Sbjct: 137 ALS-------------LSDIPFLGPIGVARVGYINNQYVLNPTISELANSKLDLVISGTE 183 Query: 196 SGHIVEVQGSAERATFSQDHFFAML 220 S +I+ V+ +E + S+ + Sbjct: 184 S-NILMVE--SESSLLSEKEILNAI 205 >gi|188583695|ref|YP_001927140.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium populi BJ001] gi|226702662|sp|B1ZGS7|PNP_METPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|179347193|gb|ACB82605.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium populi BJ001] Length = 745 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 90/241 (37%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I V A GS L G+T L ATL + G Sbjct: 316 RIDGRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R V+ + I + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD G I +Q + A +++ L AKD A ++ Sbjct: 483 LGDEDHLGDMDFKVAGTDEG-ITSLQMDIKIAGITEEIMRVALAQAKDGRAHILGEMAQA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 38/236 (16%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ L + + A+G+ + +G+T +L T + K P +T Y + Sbjct: 14 RKLVLETGKTARQADGAVVATYGETTVLATV-VAAKEPK--AGIDFMPLTVNYQERAYAA 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + + R+I R +R + Q+++ + Sbjct: 71 GRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ A AL G + A G L G ++ E + Sbjct: 128 IVSMVAASAAL-------------TLSGVPFMGPIGAARVGYLNGGYKLNPLVTEVAEST 174 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229 +D T ++ V+ A+ + F HF ++ LA+ + Sbjct: 175 LDLVVAGTQDA-VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKE 229 >gi|87200495|ref|YP_497752.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium aromaticivorans DSM 12444] gi|123736106|sp|Q2G5F5|PNP_NOVAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|87136176|gb|ABD26918.1| Polyribonucleotide nucleotidyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 772 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57 R+ GR Q+R I GS L G+T + T TL E++ + ++ Sbjct: 315 RIDGRTTTQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTKDAEQMIDGLEGLRYE 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G ++ RAL V+ I I D Sbjct: 375 NFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHPVLPTKEEFPYTIRILSD 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D ++ + + +L+G A+ + D+ Sbjct: 431 ITESNGSSSMATVCGGCLSMMDAGVPVKRPVSGIAMGLILEGDKFAV---------LSDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ F L A + A ++ Sbjct: 482 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKVAGITREIFEVALRQASEGRAHILGEMTKA 540 Query: 238 ISN 240 + Sbjct: 541 LGE 543 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 28/224 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++L +++ A+G+ L +G+T +L T + V +T Y S Sbjct: 16 LTLETGRIARQADGAVLATYGETVVLCAVTAAKSV---KEGQDFFPLTVHYQ-EKYSAAG 71 Query: 73 RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TA 128 R+ +G +E + R+I R +R + I + V+ DG T Sbjct: 72 RIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNE--INVIAQVLSYDGETEPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST-IDV 187 A+ A AL G +AA G + G +++ +D D Sbjct: 130 AMIAASAAL-------------TISGVPFMGPIAAARVGFIEGEYVLNP--KQDVALADG 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + V+ + V + S E S+D + A D I +I Sbjct: 175 RLDLVVAATDTAVMMVES-EAKELSEDEMLGAVLFAHDEIKKVI 217 >gi|83945015|ref|ZP_00957381.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii HTCC2633] gi|83851797|gb|EAP89652.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii HTCC2633] Length = 709 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +Q+R I V GS L G+T L TL + T Sbjct: 317 RIDGRSLDQVRPIVSEATVLPRTHGSALFTRGETQALAVVTLGTGEDEQFIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R A R+ G ++ RAL +V+ + + + + Sbjct: 377 RFLLHYNFPPYSVGETSFRLAPGRREIGHG----KLAWRALNAVMPNAETFPYTVRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A + G +AL D + V+ I+ G++ G + Sbjct: 433 ITESNGSSSMATVCGGSLALMDAGV-------------PITRPVSGIAMGLIKDPEGVAV 479 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G + +Q + A ++D LN AK +++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEEG-VTSLQMDIKIAGITKDIMQTALNQAKGGRMHILEE 538 Query: 234 QKDVISN 240 +S Sbjct: 539 MNKALSG 545 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 27/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L + A G+ L +G+T +L TA ++ V + + G + Sbjct: 14 RTLTLETGRMARQANGAVLATYGETTVLATAVAQKDVKPGVDFFPLTVNYQEKYFAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + Q++I + Sbjct: 74 P---GGYFKRE---GRPTDKETLTSRLIDRPIRPLFPKGFKNDTQVMITVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + GA AL G + A G G I++ E + Sbjct: 128 VVGMIGASAALCLSGL-------------PFLGPIGAARVGYKDGEYIINPTVAEMDDTE 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T S ++ V+ +E S++ + + +I + Sbjct: 175 LDLVVAGT-SDAVMMVE--SEAKELSEETMLGAVMAGHEAFQPVIDM 218 >gi|293510045|ref|ZP_06668753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M809] gi|291466989|gb|EFF09507.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M809] Length = 580 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ +A I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + +++ L A+ +++ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539 Query: 233 LQKDVISNE 241 I Sbjct: 540 HMLQTIDQP 548 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D + Sbjct: 75 ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+ ++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223 >gi|307721696|ref|YP_003892836.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas autotrophica DSM 16294] gi|306979789|gb|ADN09824.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas autotrophica DSM 16294] Length = 726 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG- 57 +R GR+ ++R I++ V A SCL G T L T + M+ T G Sbjct: 344 VRADGRKLTEIRPITIDTNVLPAAHSSCLFTRGQTQALVVLTMGGPKDAQMFEGLTDEGT 403 Query: 58 ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G R+ G + RAL ++DL + + + Sbjct: 404 QNENFMVHYNFPGFSVGEASPVMGTKRRELGHG----NLAKRALEPIIDLD---GQTVRL 456 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A + G ++AL D + V G AI + Sbjct: 457 VSEILESNGSSSMATVCGGYMALRAADIETSDTVAGIAMGMVSDGERYAI---------L 507 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D + G I +Q + S + L AK+ A +I + Sbjct: 508 SDIMGLEDHDGDMDFKVTGSKEG-ITAMQMDIKLGGISLNILKEALYQAKEGRAHIIDIM 566 Query: 235 KDV 237 D Sbjct: 567 LDA 569 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 24/208 (11%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRV 74 V+K A GS +K G T +L T ++E I +T +Y + G Sbjct: 20 DVAKQANGSAWIKSGKTVILATVVIDETE---IVKDDFLPLTVQYIEKTYAAGKIPGGFF 76 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134 KRE + R++ R+LR + QI I V AD Sbjct: 77 KRET---KPSDFETLTSRIVDRSLRPLFPKGFGHPTQITI--MVFSAD-----------S 120 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194 + L + F + V A+ + G I++ + +D T Sbjct: 121 ESDMQVLALNAASAALFTSDIDVNSSVCAVRAAKVDGELILNPTLTQLKNSSLDLYLSGT 180 Query: 195 DSGHI-VEVQGSAERATFSQDHFFAMLN 221 + +E++ +D + ML+ Sbjct: 181 KDDLLMIEMRSIGSEKVEVEDTYEPMLD 208 >gi|224531821|ref|ZP_03672453.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia valaisiana VS116] gi|224511286|gb|EEF81692.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia valaisiana VS116] Length = 722 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + +++ L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKNLMRDALEQARVGRIHILS 535 Query: 233 LQKDVISN 240 + VIS+ Sbjct: 536 IMDAVISD 543 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 32/240 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ + K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGLMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFSGPIAAVRMVYLNGEFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E D+D V I V+G A S+D + ++ A + I + QK+ + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFLE 222 >gi|219854675|ref|YP_002471797.1| hypothetical protein CKR_1332 [Clostridium kluyveri NBRC 12016] gi|219568399|dbj|BAH06383.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 715 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R+ GR+ +++R IS A G+ L G T ++T TL + I + Sbjct: 319 RVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGDVQILDGVGLEDSK 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y STG R+ G + +AL ++ + I + + Sbjct: 379 RYMHHYNFPSYSTGEVRPLRGPGRREIGHG----ALAEKALEPLIPMEEQFPYTIRLVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A+I G+ +AL D ++ + + V ++ + D+ Sbjct: 435 VLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLS-------QEEILTDI 487 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S L A+ +++ K Sbjct: 488 QGLEDFFGDMDFKVGGTEKG-ITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQC 546 Query: 238 ISNE 241 I Sbjct: 547 IPEH 550 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 78/216 (36%), Gaps = 26/216 (12%) Query: 29 LVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84 L+ +GDT +L A E + + + ++ G +P G +KRE G+ Sbjct: 37 LISYGDTVVLINANASDKPREGIDFFPLSIEYEERLYSVGKIP---GGFIKRE---GKPS 90 Query: 85 GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144 ++ R I R LR + Q++ + D A+ GA +AL Sbjct: 91 EKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDNLPNIVAMNGASLALC------ 144 Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204 S V +++ G++ G I++ + + ++ T ++ V+ Sbjct: 145 -------ISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKE-RVMMVEA 196 Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 A +D + + + + Q++V+ Sbjct: 197 GACEVP--EDIMYDAIIFGFEECKKIALFQEEVMKK 230 >gi|153954062|ref|YP_001394827.1| polynucleotide phosphorylase/polyadenylase [Clostridium kluyveri DSM 555] gi|189037304|sp|A5N848|PNP_CLOK5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096734|sp|B9E1K8|PNP_CLOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146346943|gb|EDK33479.1| Pnp [Clostridium kluyveri DSM 555] Length = 708 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R+ GR+ +++R IS A G+ L G T ++T TL + I + Sbjct: 312 RVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGDVQILDGVGLEDSK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y STG R+ G + +AL ++ + I + + Sbjct: 372 RYMHHYNFPSYSTGEVRPLRGPGRREIGHG----ALAEKALEPLIPMEEQFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A+I G+ +AL D ++ + + V ++ + D+ Sbjct: 428 VLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLS-------QEEILTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S L A+ +++ K Sbjct: 481 QGLEDFFGDMDFKVGGTEKG-ITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQC 539 Query: 238 ISNE 241 I Sbjct: 540 IPEH 543 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 78/216 (36%), Gaps = 26/216 (12%) Query: 29 LVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84 L+ +GDT +L A E + + + ++ G +P G +KRE G+ Sbjct: 30 LISYGDTVVLINANASDKPREGIDFFPLSIEYEERLYSVGKIP---GGFIKRE---GKPS 83 Query: 85 GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144 ++ R I R LR + Q++ + D A+ GA +AL Sbjct: 84 EKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDNLPNIVAMNGASLALC------ 137 Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204 S V +++ G++ G I++ + + ++ T ++ V+ Sbjct: 138 -------ISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKE-RVMMVEA 189 Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 A +D + + + + Q++V+ Sbjct: 190 GACEVP--EDIMYDAIIFGFEECKKIALFQEEVMKK 223 >gi|159900395|ref|YP_001546642.1| polynucleotide phosphorylase/polyadenylase [Herpetosiphon aurantiacus ATCC 23779] gi|257096698|sp|A9B8G1|PNP_HERA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|159893434|gb|ABX06514.1| Polyribonucleotide nucleotidyltransferase [Herpetosiphon aurantiacus ATCC 23779] Length = 777 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 30/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR+ N++R I++ V GS L G T +LT ATL R G T Sbjct: 320 IRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATLGSPGDEQ-RLDDLGIET 378 Query: 61 AE-----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y STG R G ++ RAL V+ + + Sbjct: 379 TRHYMHHYNFPAFSTGEARPSRGPRRRDIGHG----KLAERALVPVLPEKDKFPYTMRLV 434 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V+ ++G + A++ G+ +AL D +K VA ++ G++ G Sbjct: 435 SEVLASNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGVAMGLITGKEAG 481 Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 + D+ ED+ D+D T +G I +Q + + + A+ Sbjct: 482 QFSVLTDIQGLEDALGDMDFKVAGTTAG-ITALQMDIKTTGITYEIMQQAFEQARQGRVF 540 Query: 230 LIKLQKDVISN 240 ++ ++I+ Sbjct: 541 ILDKMNEIINT 551 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 28/235 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +++ V++ A G+ LV++GDT LL T + + + + G + Sbjct: 16 RPLTIEAGRVAQLANGAVLVRYGDTVLLAAVTASAEPRDGIDFFPLTVDYEEKMYAAGKI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G+ KRE GR + R+ R LR + Q+ I Sbjct: 76 P---GSFFKRE---GRPTETAILTSRLTDRPLRPLFPKGYYNDVQVSITTLSTDQVNDPG 129 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA AL V A+ G + G V+ G Sbjct: 130 PLAIIGASAALV-------------ISDIPFAAPVGAVQMGHIDGVFAVNPVMGLMENSR 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 +D T ++ V+ SA ++ + + + +I+ Q + ++ + Sbjct: 177 LDLVVAGTSEA-VMMVEASAYE--LTEAEMLEAVKRGHEAMQAVIQAQLE-LAEK 227 >gi|73993245|ref|XP_534492.2| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal RNA processing protein 43) (Exosome component 8) (p9) (Opa-interacting protein 2) isoform 1 [Canis familiaris] Length = 276 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPP-TDAPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + SG G +Q + I + ++ L G ++ Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDIICLDYDGNILDACTFALLAALKNAQLPEVTINEETGLAEVNLKKKSYLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 256 VTRHKEVKKLMDEVIKS 272 >gi|330836568|ref|YP_004411209.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides DSM 17374] gi|329748471|gb|AEC01827.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides DSM 17374] Length = 705 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 90/246 (36%), Gaps = 17/246 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTK 55 +R GR+ + +R I+ + GS L G+T L TA+ E+ Sbjct: 316 VRTDGRKVDDIRPITCEVGLLPMTHGSALFTRGETQSLAVTTLGTASDEQMFDTIDGEKS 375 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G R + R+ G + RAL+++V + + Sbjct: 376 FSSFMLHYNFPPYSVGE-TGRLSTGRREIGHGH----LAQRALQAIVPPKEKFPYTVRVV 430 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A++ G ++L D ++ + + +G A + Sbjct: 431 SEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGEDYARYV------VLS 484 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T+ G I Q + A + + L+ AK ++ + Sbjct: 485 DILGEEDHLGDMDFKVAGTEDG-ITAFQMDIKIAGVTPEIMSKALDQAKRGRLHILDVMG 543 Query: 236 DVISNE 241 + Sbjct: 544 KTLKTP 549 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 30/222 (13%) Query: 25 EGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84 EGS ++ + A E + + ++ G +P G +KREA R Sbjct: 36 EGSAIIAT----VCCGAAPSEPLDYVPLSVEYNEKYYAAGKIP---GGFLKREA---RPK 85 Query: 85 GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144 + + R+I R +R + D A G R+I I V+ +D D + Sbjct: 86 DKEILVSRLIDRPMRPLFD-KAFG-REIQIVPTVVSSD-----------QANQPDIIAIN 132 Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204 + G + A+ ++ G I++ + + + +D T G I V+G Sbjct: 133 AASAAVMISDIPFAGPIGAVRIALVDGDYIINPTFQQTAQAQLDIVVSGTRDG-ITMVEG 191 Query: 205 SAERATFSQDHFFAMLNLAKDRIADL----IKLQKDVISNEV 242 A+ S++ + A+ I L I+LQK V ++ Sbjct: 192 GAKE--VSEEVMLKAIAAAQPVITALCDAQIELQKIVGKEKL 231 >gi|328953964|ref|YP_004371298.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans DSM 11109] gi|328454288|gb|AEB10117.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans DSM 11109] Length = 711 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS + GS L G+T L ATL +E+ + Sbjct: 324 RIDGRSYTDIRPISCEVGLLSRTHGSALFSRGETQALAVATLGTVSDEQRIETLTGDTFK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G S R+ G + RAL V+ I + + Sbjct: 384 AFMLHYNFPPYSVGETRMLRGPSRREIGHG----ALAERALSRVLPQPEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 ++ ++G + A + G +A+ D +K VA ++ G++ Sbjct: 440 ILSSNGSSSMATVCGGSLAMMDAGI-------------PIKAPVAGVAMGLIKEENNIAI 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L+ A++ ++ Sbjct: 487 LSDILGDEDHLGDMDFKVAGTAAG-ITALQMDIKIGGINREIMSQALHQAREARLHILSR 545 Query: 234 QKDVISNE 241 + I Sbjct: 546 MNEAIDQP 553 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 27/220 (12%) Query: 23 YAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 A G+ ++GDT +L TA L E + + ++ G +P G +RE Sbjct: 35 QASGAVFARYGDTGVLVTAVASDRLREGIDFLPLTVDYLEMSYAAGRIP---GGFFRREI 91 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 GR + R+I R +R + QII + + A+ GA AL Sbjct: 92 --GRPSEKETLTSRLIDRPIRPLFPKGFFHELQIIATVLSVDMENDPDIIALNGASAALA 149 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN-FVMTDSG 197 +G +AA+ G + G +V+ + N V + Sbjct: 150 -------------ISDIPFQGPIAAVRMGKVGGELMVNPTIS--QLKESTLNLIVAGSND 194 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +V V+G AE A S++ L A + +++LQ+ + Sbjct: 195 ALVMVEGGAELA--SEEEILEALFTAHAEMQPILRLQEQM 232 >gi|255264847|ref|ZP_05344189.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62] gi|255107182|gb|EET49856.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62] Length = 711 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+ +++R+I + GS L G+T L ATL + + G Sbjct: 318 RIDGRKTDEVRDIVCETGLLPRTHGSALFTRGETQGLVVATLGTGDDEQMIDALQGMYRS 377 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFMLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLVLEDDGDYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + D L AK+ ++ Sbjct: 481 ILTDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPDIMEKALAQAKEGRLHILG 539 Query: 233 LQKDVISN 240 IS+ Sbjct: 540 EMNKSISS 547 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + +G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATYGETSVMANVTFAKKQKPGQDFFPLTVHYNEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVPGF--KNEVLVICTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDST 184 A+ A AL G ++A G G I+ +LD D Sbjct: 128 MVAMIAASAALTISGA-------------PFMGPISACRVGFEDGEYILNPELDDMHDLR 174 Query: 185 --IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E +++ + A ++I I L Sbjct: 175 NKPEQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAVKFAHEQIQTPIDL 224 >gi|225630576|ref|YP_002727367.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi] gi|254782747|sp|C0R3T4|PNP_WOLWR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225592557|gb|ACN95576.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi] Length = 757 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56 +R+ GR+ +++R+I + + GS L G+T L TA T +E++ I + Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y + G + + G R ++ +A+ V+ + I + Sbjct: 370 EHFMLHYNFPSFAVGE----TSAARAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +++++DG + A + G +AL D +K VA I+ G++ Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGV-------------PIKAPVAGIAMGLIKDKDEYV 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + + S + L AK +++ Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-VTALQMDMKISGISFEIVEKSLEQAKAGRLHILE 531 Query: 233 LQKDVISNE 241 VIS Sbjct: 532 KMNAVISEH 540 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 31/232 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R +SL +++ A GS +V +GDT +L T EE V N + I Y M Sbjct: 14 RTLSLETGKIARQAHGSVVVNYGDTSVLVTVVSKKKEENVDFLPLNVQF--IAKSYAMGK 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G KRE G+ R I R+I R++R + I + C+++ D Sbjct: 72 IP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTVNPP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184 A+ GA AL +A + G I++ E Sbjct: 126 EVPALIGAVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKA 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D F+ D I+ V+ +E S+++ F + + + +IKL K+ Sbjct: 173 SSLDL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221 >gi|15644097|ref|NP_229146.1| polynucleotide phosphorylase/polyadenylase [Thermotoga maritima MSB8] gi|170289273|ref|YP_001739511.1| polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2] gi|81553535|sp|Q9X166|PNP_THEMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704827|sp|B1LBY0|PNP_THESQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|4981905|gb|AAD36416.1|AE001789_1 polynucleotide phosphorylase [Thermotoga maritima MSB8] gi|170176776|gb|ACB09828.1| Polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2] Length = 708 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR+ ++R IS + GS L G+T L TL + + I +T Sbjct: 316 IRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + RAL++++ I + Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGH----LAERALKNMLPPEEEFPYTIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A + +AL D +K HVA I+ G++ Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGV-------------PIKKHVAGIAMGLILEEDAEI 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + S + L A++ ++ Sbjct: 479 ILTDIIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILD 537 Query: 233 LQKDVIS 239 + IS Sbjct: 538 RMYETIS 544 Score = 96.3 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 35/238 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 RE+ + V+K + GS LV+FGDT +L TA + +K + +T E+ Sbjct: 11 RELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKA---VEGIDFVPLTVEFQERFYAA 67 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G +KRE G+ + R+I R +R + Q+I+ + + Sbjct: 68 GKIP---GGFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNV 121 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED- 182 I A +AL+ +G VA I G G I L ED Sbjct: 122 PPDVVGIFAASLALN-------------VSKIPFEGIVAGIRVGYRDGQFIA-LPSEEDI 167 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T + V+G A+ +++ L A I +L+ Q++++S Sbjct: 168 EKGLMDITVAGTKDA-VTMVEGEAKE--VTEEDMVKALRFAHSVIKELVDFQEEILSE 222 >gi|154497054|ref|ZP_02035750.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC 29799] gi|150273453|gb|EDN00581.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC 29799] Length = 716 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 89/234 (38%), Gaps = 27/234 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 R+ GR +N++R +S V GS L G T +L+ ATL +T + Sbjct: 322 RVDGRAKNEIRPLSAEVGVLPKVHGSGLFTRGQTQVLSVATLNTLAASQKLDTIWEEEEK 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RAL V+ I + + Sbjct: 382 RYMHHYNFPPYSVGEAKAPRSTNRREYGHG----ALAERALVPVLPSVDEFPYAIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----Y 172 V+ ++G T +I G+ +AL D +K VA ISCG++ Sbjct: 438 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKAPVAGISCGLIQDDDGSFQ 484 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +D+ ED ++D T +G I +Q + + + L + KD Sbjct: 485 TFIDIQGVEDFHGEMDFKVAGTKAG-ITAIQMDLKNDGLTHEIIKQALEITKDA 537 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 25/204 (12%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R S+ + A + LV++GDT + + + V + + G + Sbjct: 23 RPFSIEVGKTAELANAAALVRYGDTTVHVAICVSPRPRDGVDFFPLSVDFEEKLYAVGRI 82 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G+ ++RE GR + R+I R +R + I + D Sbjct: 83 P---GSFMRRE---GRPSLPAVLASRLIDRPIRPLFPYDFRNDVCITCTVMSVDYDCSPE 136 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G L G + + G G + + + T Sbjct: 137 VTAMIGVSACLSY-------------SEIPFAGPIGCLEVGYCDGEIVFNPTQEQRKTSR 183 Query: 187 VDANFVMTDSGHIVEVQGSAERAT 210 +D T+ +V ++ A++ Sbjct: 184 MDVTVAATEK-KVVMIEAGADQIP 206 >gi|84500513|ref|ZP_00998762.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis HTCC2597] gi|84391466|gb|EAQ03798.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis HTCC2597] Length = 712 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 21/242 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R+I + + GS L G+T L TL I + HG + Sbjct: 318 RIDGRALDQVRQIEVETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQIIDALHGNFRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--PIV 175 + +++G + A++ G +++ D ++ + VL+ G + Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVLED----------DGEFAILT 483 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 484 DILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKKALAQAKDGRMHILGEMN 542 Query: 236 DV 237 Sbjct: 543 KA 544 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 35/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI- 185 A+ A AL G +A G + G +++ D ED Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAGCRVGYVDGDYVLNPD-VEDMNGL 173 Query: 186 ----DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E ++D + A ++I +I L Sbjct: 174 RNNPEQRLDLVVAGTKDAVMMVES-EAYELTEDEMLGAVTFAHEQIQPVIDL 224 >gi|320104995|ref|YP_004180586.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC 43644] gi|319752277|gb|ADV64037.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC 43644] Length = 766 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 30/243 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR +R IS + A GS L + G+T L T L +E+ I + Sbjct: 330 LRSDGRGPKDLRPISCEVGLLPKAHGSALFQRGETQALVTTVLGTAADEQRIDGIMDEYT 389 Query: 57 GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +Y M + G R R G R + R++ V+ A I + Sbjct: 390 KKFMLDYNMPSFAVGEVRPIRG-----PGRREIGHGALAERSVAPVLPDPARFPYTIRVV 444 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173 D+++++G + A++ GA ++L D + V IS G++ P Sbjct: 445 SDILESNGSSSMASVCGATLSLMDAGV-------------PISDPVGGISIGLVWDEPTD 491 Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 + D+ ED D+D T G + +Q + S L+ A + + Sbjct: 492 RFVLLTDIIGDEDHYGDMDFKVAGTQRG-VTGIQLDLKNLGISPRIVRETLDQALEARME 550 Query: 230 LIK 232 +++ Sbjct: 551 ILR 553 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 78/220 (35%), Gaps = 29/220 (13%) Query: 22 KYAEGSCLVKFGDTHLLT---TATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 K A GS +V+ G T L TA E + + ++ G P G +KRE Sbjct: 36 KQATGSVVVQVGGTMSLVAVVTAPGREGLDFFPLQVEYREKVYAAGKFP---GGFIKRE- 91 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTAAITGAWVA 136 GR + R+I R +R + QI I AD ++ GA A Sbjct: 92 --GRPTTKDILTSRLIDRPIRPLFPEWYRDEVQIQAS--PISADRINDPDVLSMIGASAA 147 Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196 L G V +I G + G + E D+D T S Sbjct: 148 LCLT-------------PAPFLGPVGSIRVGRIDGRLVPLPTAEEMEQSDLDLVVASTTS 194 Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 IV ++G + S + F A++ A + +I LQ + Sbjct: 195 -KIVMIEGFGQELPES-EMFDAIMK-AHEYNQAVIALQHE 231 >gi|121535268|ref|ZP_01667082.1| Polyribonucleotide nucleotidyltransferase [Thermosinus carboxydivorans Nor1] gi|121306153|gb|EAX47081.1| Polyribonucleotide nucleotidyltransferase [Thermosinus carboxydivorans Nor1] Length = 699 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R IS + + GS L G T +LT A +E++ + + Sbjct: 310 VRPDGRKLDEIRPISCEVGLLRRTHGSGLFTRGQTQVLTVTTLGAIGDEQILDGLGVEES 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ I + Sbjct: 370 KRYMHHYNFPAFSVGETRPARGPGRREIGHG----ALAERALLPVIPPETEFPYTIRLVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T ++ G+ ++L D +K V+ ++ G++ Sbjct: 426 EVLESNGSTSMGSVCGSTLSLMDAGV-------------PIKAPVSGVAMGLVKEGDHYT 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + + +++ L A+ ++ Sbjct: 473 ILTDIQGIEDALGDMDFKVAGTAKG-VTAIQMDIKISGITKEILADALEQARRGRLFILD 531 Query: 233 LQKDVISNE 241 +VI Sbjct: 532 KMLEVIKEP 540 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 83/234 (35%), Gaps = 27/234 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + K A G+ L+++GDT +L TAT + + + + G + Sbjct: 11 RALVVETGKMAKQANGAVLIRYGDTAVLVTATASAEPRQGIDFFPLTVDYEERLYSVGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I R +R + ++ + D Sbjct: 71 P---GGFIKRE---GRPSEAAILAGRLIDRPIRPLFAEGFRNDVHVVATVLSVDQDNPPD 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G + + G + G I++ + D Sbjct: 125 IPAMIGASCALS-------------ISDIPFNGPIGGVRVGRVDGQFIINPTVEQQERSD 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ T ++ V+ A ++ + D I +++ Q+ +++ Sbjct: 172 LNLVVAGTKDA-VLMVEAGANEVP--EEAILDAITFGHDVIREIVAFQEKIVAE 222 >gi|6006870|gb|AAF00646.1|AC009540_23 putative polynucleotide phosphorylase [Arabidopsis thaliana] gi|6091752|gb|AAF03462.1|AC009327_1 putative polynucleotide phosphorylase [Arabidopsis thaliana] Length = 948 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 33/246 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56 R GR +++R I+ + A GS L G+T L TL +K + + ++ Sbjct: 473 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 532 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A S R+ G + RAL +++ I ++ Sbjct: 533 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGT----LAERALETILPSDDDFPYTIRVES 588 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 VI+++G + A++ G +AL D +K VA I+ GM+ Sbjct: 589 TVIESNGSSSMASVCGGCLALQDAGV-------------PVKCSVAGIAMGMVWDTEEFG 635 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D + G + Q + + + L AK Sbjct: 636 GDGSPLILSDITGAEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAG 694 Query: 227 IADLIK 232 ++ Sbjct: 695 RRHILA 700 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 30/236 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68 REI + + + A + V G+T + T+ L + VP + ++ + + + R Sbjct: 123 REILVETGLMGRQASSAVTVTDGETIVYTSVCLAD-VPSEPSDFLPLYVHYQERFSAVGR 181 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 ++G KRE GR I R+I R LR + QI+ V+ DG Sbjct: 182 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMPKGFYNETQIL--SWVLSYDG----- 231 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + D L +A + G++ G IV+ E +D Sbjct: 232 ------LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLD 285 Query: 189 ANFVMTDSGHIVEVQGSAERAT--FSQDHFFAMLNLAKDRIA-DLIKLQKDVISNE 241 TD+ + + E + ++ + + +D + I + +V++ + Sbjct: 286 LFLAGTDTAIL-----TIEGYSNFLPEEMLLQAVKVGQDAVQATCIAI--EVLAKK 334 >gi|42520733|ref|NP_966648.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont of Drosophila melanogaster] gi|81652354|sp|Q73GN4|PNP_WOLPM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|42410473|gb|AAS14582.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 757 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56 +R+ GR+ +++R+I + + GS L G+T L TA T +E++ I + Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y + G + + G R ++ +A+ V+ + I + Sbjct: 370 EHFMLHYNFPSFAVGE----TSAARAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +++++DG + A + G +AL D +K VA I+ G++ Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGV-------------PIKAPVAGIAMGLIKDKDEYV 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + + S + L AK +++ Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-VTALQMDMKISGISFEIVEKSLEQAKAGRLHILE 531 Query: 233 LQKDVISNE 241 VIS Sbjct: 532 KMNAVISEH 540 Score = 82.1 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 31/232 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R +SL +++ A GS +V +GDT +L T EE V N + I Y M Sbjct: 14 RALSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKKEESVDFLPLNVQF--IAKSYAMGK 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G KRE G+ R I R+I R++R + I + C+++ D Sbjct: 72 IP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTVNPP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184 A+ GA AL +A + G I++ E Sbjct: 126 EVPALIGAVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKA 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D F+ D I+ V+ +E S+++ F + + + +IKL K+ Sbjct: 173 SSLDL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221 >gi|268575784|ref|XP_002642872.1| Hypothetical protein CBG15142 [Caenorhabditis briggsae] Length = 721 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 90/239 (37%), Gaps = 20/239 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52 +R GR+ R I + + K G + + G T +++T T + V + Sbjct: 312 IRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPTAAFHPDSVAQLLG 371 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 + + Y +T + +++ R+ G + +AL+ + + Sbjct: 372 SQRKKSFMLHYEFPSFATNDIGASRSLNRREIGHG----ALAEKALKPLFPTGF--PYAV 425 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + C V++++G + A++ G +AL+D M++ + + G ++ Sbjct: 426 RLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAI-----GLISDEKEPETNYK 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T +G Q + ++ L+ A+ I ++ Sbjct: 481 VLTDILGIEDYAGDMDFKIAGTKNG-FTAAQLDVKNDGLTRQQLRESLDAARAGIDHVL 538 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 32/228 (14%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-ITAEYGMLPRSTG---- 71 T ++++A + + GD ++ T + +G + EY + G Sbjct: 42 TGHMARFASAAVVASSGDNSVMATVV----QRKQKQGDGNGVPLQVEYRPSASAVGRIPT 97 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 N ++RE Q I R I R++R ++ ++ Q+I + + I Sbjct: 98 NFLRRELS---QSDNEILISRAIDRSIRPLMPANSY-ETQVICKPLALDENADQIMLGIN 153 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI--VDLDYGEDSTIDVDA 189 A ALH S G +AAI M I V+ E ++ Sbjct: 154 AASSALH-------------ISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNM 200 Query: 190 NFVMTDSGHIVEVQGSAERATFSQ-DHFFAMLNLAKDRIADLIKLQKD 236 M + V ++ E ++ + L++A + L + Sbjct: 201 IVAMRRNQKTVMIELDGEE---TRGEQLEEALDVAFQNVERLHVAMDE 245 >gi|148270567|ref|YP_001245027.1| polynucleotide phosphorylase/polyadenylase [Thermotoga petrophila RKU-1] gi|187611330|sp|A5IMM8|PNP_THEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|147736111|gb|ABQ47451.1| Polyribonucleotide nucleotidyltransferase [Thermotoga petrophila RKU-1] Length = 708 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR+ ++R IS + GS L G+T L TL + + I +T Sbjct: 316 IRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + RAL++++ I + Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGH----LAERALKNMLPPEEEFPYTIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A + +AL D +K HVA I+ G++ Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGV-------------PIKKHVAGIAMGLILEEDAEI 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + S + L A++ ++ Sbjct: 479 ILTDIIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILD 537 Query: 233 LQKDVIS 239 + IS Sbjct: 538 RMYETIS 544 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 35/238 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 RE+ + V+K + GS LV+FGDT +L TA + +K + +T E+ Sbjct: 11 RELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKA---VEGIDFVPLTVEFQERFYAA 67 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G +KRE G+ + R+I R +R + Q+I+ + + Sbjct: 68 GKIP---GGFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNV 121 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED- 182 I A +AL+ +G VA I G G I L ED Sbjct: 122 PPDVVGIFAASLALN-------------VSKIPFEGIVAGIRVGYRDGQFIA-LPSEEDI 167 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T + V+G A+ ++ L A I +L+ Q++++S Sbjct: 168 EKGLMDITVAGTKDA-VTMVEGEAKEVA--EEDMVKALRFAHSVIKELVDFQEEILSE 222 >gi|270158094|ref|ZP_06186751.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae D-4968] gi|289163641|ref|YP_003453779.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae NSW150] gi|269990119|gb|EEZ96373.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae D-4968] gi|288856814|emb|CBJ10625.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae NSW150] Length = 721 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 92/244 (37%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R IS+ ++ + A GS L G+T + ATL + I Sbjct: 314 RIDGRDCKTVRPISIRTKLLERAHGSVLFTRGETQAIVVATLGNERDAQILDNITGESKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ RA+ +V+ S + + + Sbjct: 374 RFMLHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRAIMAVLPESNDFPYVLRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D ++ + + +G A+ + D+ Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + + L+ A + ++ + + Sbjct: 481 LGDEDHLGDMDFKVAGTEHG-ITALQMDIKIQGITSAIMEQALDQALEGRMYILGVMNNA 539 Query: 238 ISNE 241 ++ Sbjct: 540 LAEH 543 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 70/229 (30%), Gaps = 34/229 (14%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRST 70 L V++ A+G+ T +L T + E + + G +P Sbjct: 17 LETGEVARQADGAVFASMNGTQVLATVVGKKDGGENSGFFPLTVNYQEKFYAVGKIP--- 73 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR I R+I R +R + Q+I + + A+ Sbjct: 74 GGFNKRE---GRPTELETLISRLIDRPIRPLFPEGFCNEVQVIATVLSLNPEVSPDIVAM 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 + AL G + A G G +++ E +D Sbjct: 131 IASSAALA-------------LSGVPFNGPIGAARVGYRDGIYLLNPSRKELEHSKLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFF-------AMLNLAKDRIADLIK 232 T + I+ V+ +E S+D M+ I +L Sbjct: 178 VAGTKNA-ILMVE--SEAKELSEDIMRGAIMFGHEMMKNVIKAIEELAA 223 >gi|256821536|ref|YP_003145499.1| polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM 16069] gi|256795075|gb|ACV25731.1| Polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM 16069] Length = 706 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R + + V GS + G+T + ATL + I+++ G Sbjct: 315 RIDGRDPDMVRALDVRTGVFPRTHGSAIFTRGETQAMVFATLGTERDAQIKDSIMGEAKD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + ++V A I + + Sbjct: 375 HFMLHYNFPPYCVGETGFMGSPKRREIGHG----RLAKRGVAAMVPGIAEFPYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ G +AL D M K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGTSLALMDAGVPM-------------KAPVAGIAMGLVKEADNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +Q+ L+ AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGTENG-ITALQMDIKIEGITQEIMEQALHQAKGGRLHILSV 536 Query: 234 QKDVISNE 241 + Sbjct: 537 MNQALEKP 544 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 34/233 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +++ V++ A G+ ++ T T + E + + T G + Sbjct: 13 RTVTIETGRVARQATGAVVIDCDGTTAFVAVTGKKEVREGQDFFPLTVNYTEKTYAAGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KREA R I R+I R LR + + Q++I + D T Sbjct: 73 P---GGFLKREA---RPSDEETLIARLIDRPLRPLFPDGFMNEVQVVITIVSVNQDVPTE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G V A G L G +++ + Sbjct: 127 VVAMLGASAALEISGI-------------PFSGPVGAAQVGYLDGEYVLNPSVTQLKESK 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-------NLAKDRIADLIK 232 +D T+S ++ +E ++ + +A I +L Sbjct: 174 LDLMVAGTESAVLMV---ESEANELPENVMLGAVMFGHQESQVAIKAIKELAA 223 >gi|332882701|ref|ZP_08450313.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679501|gb|EGJ52486.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 747 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 20/245 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR Q+R I A GS + G+T LTT TL E V Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ ++ + + Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKRMIPED--CPYTVRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + +AL D M + + + G A+ + D Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLISDGDRYAV---------LSD 482 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + LN A++ ++ D Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541 Query: 237 VISNE 241 I+ Sbjct: 542 TIAQP 546 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 27/228 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A+G+ +V+ G+ LL T + + + A G Sbjct: 16 RTITIETGKLAKQADGAVVVQMGNAMLLATVVSARDINPETDFLPLTVDYREKFAAAGRF 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KREA R + R++ R LR + Q++I +I D Sbjct: 76 P---GGFFKREA---RPSDQEILTMRLVDRVLRPLFPKDYHAETQVMI--QLISHDENV- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G ++ + G + G IV+ + D Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQLEASD 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 +D V + V+G E S+ + A + I I+ Q Sbjct: 177 IDI-MVGASKDFVAMVEG--EMDEVSEKDMAEAIKFAHEAIKPHIEAQ 221 >gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273] gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272] gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272] gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273] Length = 712 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMFGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|296285001|ref|ZP_06862999.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium bathyomarinum JL354] Length = 769 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57 R+ GR+ +++R I + GS L G+T + T TL E++ + + Sbjct: 318 RIDGRKLDEVRPIEAIVGLLPRTHGSSLFTRGETQAICTTTLGTKDAEQMIDGLEGLSYN 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RAL V+ I + D Sbjct: 378 HFMLHYNFPPYSVGEVGRFGFTGRREIGHG----KLAWRALHPVLPSHEDFPYTIRVLSD 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +++ D +E + + +L+G A+ + D+ Sbjct: 434 ITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDDFAV---------LSDI 484 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D ++SG I +Q + A +Q+ L AK A ++ Sbjct: 485 LGDEDHLGDMDFKVAGSESG-ITSLQMDIKVAGITQEIMAKALEQAKAGRAHILGEMTKA 543 Query: 238 ISN 240 + + Sbjct: 544 LGS 546 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 29/225 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++L +++ A+G+ L +G+T +L T +KV +T Y S Sbjct: 16 LTLETGRIARQADGAVLATYGETVVLCAVTAAKKV---KEGQDFFPLTVNYQ-EKFSAAG 71 Query: 73 RVKREAVSG--RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TA 128 R+ R + + R+I R +R + I + V+ DG T Sbjct: 72 RIPGGFFKREARPTEKETLVSRLIDRPVRPLFPEGFYNE--INVIAQVLSFDGETEPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY--GEDSTID 186 A+ A AL G +A+ G G ++ D Sbjct: 130 AMIAASAAL-------------TISGVPFMGPIASARVGFRNGEYELNPTQSAALDDEGR 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 +D T+ ++ V+ +E +++ + A D +I Sbjct: 177 LDLVVAATNDA-VMMVE--SEAKELTEEEMLGAVMFAHDECRKVI 218 >gi|229031437|ref|ZP_04187437.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271] gi|228729726|gb|EEL80706.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271] Length = 712 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|229174473|ref|ZP_04302005.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3] gi|228609033|gb|EEK66323.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3] Length = 712 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|260223146|emb|CBA33418.1| Polyribonucleotide nucleotidyltransferase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 722 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 94/243 (38%), Gaps = 27/243 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L ATL + + Sbjct: 338 RIDGRDTRTVRAIEIRNGVLPRTHGSSLFTRGETQALVIATLGTERDAQRIDALSGEYED 397 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL +V+ + + + Sbjct: 398 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALVAVLPTKEEFPYSLRVVSE 453 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G ++L D LK HVA I+ G++ Sbjct: 454 ITESNGSSSMASVCGGCLSLMDAGV-------------PLKAHVAGIAMGLIKEDNRFAV 500 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-IADLIK 232 + D+ ED D+D T +G I +Q + +++ L AK+ + L + Sbjct: 501 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARVHILGE 559 Query: 233 LQK 235 +QK Sbjct: 560 MQK 562 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ +++ + G+ L+ T +L T + + + + G +P Sbjct: 39 VTMETGEIARQSTGAVLLDMDGTVVLATVVGKTEGKPGQDFFPLTVDYLEKSYAAGKIP- 97 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KRE GR R+I R +R + +++ + + A Sbjct: 98 --GSFFKRE---GRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTVSLNPEVDADIA 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + A G + G +++ +D Sbjct: 153 AMIAVSAALSVSGI-------------PFNGPIGAARVGYVNGEYVLNPGQTARKDSIMD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237 T++ ++ +E S++ + + I + +L +D Sbjct: 200 LVVAGTEAAVLMV---ESEAQQLSEEVMLGAVVYGHEQSKTAINAIHELVRDA 249 >gi|281412875|ref|YP_003346954.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila RKU-10] gi|281373978|gb|ADA67540.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila RKU-10] Length = 708 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR+ ++R IS + GS L G+T L TL + + I +T Sbjct: 316 IRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + RAL++++ I + Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGH----LAERALKNILPPEEEFPYTIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A + +AL D +K HVA I+ G++ Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGV-------------PIKKHVAGIAMGLILEEDAEI 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + + S + L A++ ++ Sbjct: 479 ILTDIIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILD 537 Query: 233 LQKDVIS 239 + IS Sbjct: 538 RMYETIS 544 Score = 94.8 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 35/238 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 RE+ + V+K + GS LV+FGDT +L TA + +K + +T E+ Sbjct: 11 RELVVQYGKVAKQSSGSVLVRFGDTVVLATANISDKA---VEGVDFVPLTVEFQERFYAA 67 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G +KRE G+ + R+I R +R + Q+I+ + Sbjct: 68 GKIP---GGFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPSI 121 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED- 182 I A +AL+ +G VA I G G I L ED Sbjct: 122 PPDVVGIFAASLALN-------------VSKIPFEGVVAGIRVGYRDGQFIA-LPSEEDI 167 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T + V+G A+ +++ L A I +L+ Q++++S Sbjct: 168 EKGLMDITVAGTKDA-VTMVEGEAKE--VTEEDMVKALRFAHSVIKELVDFQEEILSE 222 >gi|322418695|ref|YP_004197918.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18] gi|320125082|gb|ADW12642.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18] Length = 696 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I+ + A GS L G+T + ATL V ++ +G Sbjct: 312 RIDGRDTKTIRNIATEVGLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R A R+ G + RAL+ V+ I I D Sbjct: 372 KFLLHYNFPPYSVGETSFRLAPGRREIGHGM----LAERALQQVLPKHDDFPYTIRIVSD 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G +++ D +K VA I+ G++ Sbjct: 428 ITESNGSSSMATVCGGSLSMMDAGI-------------PIKAPVAGIAMGLIKEGDDFAI 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ A L AK Sbjct: 475 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMSAALAQAKAG 526 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 31/234 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPRST 70 I++ ++K A G+ ++K GDT +L TA V M G+ +T Y + Sbjct: 14 ITIETGKIAKQASGAVMIKSGDTMVLVTA-----VAMKSAKEGQGFFPLTVNYQEKAYAG 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + KRE GR R+I R +R + L Q++ D Sbjct: 69 GRIPGSFFKRE---GRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKDHDPG 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G +A + G + G I + ++ D Sbjct: 126 ILAMIGASAAL-------------MVSDVPFAGPIAGVKVGRVDGVFIANPSAEQEEQSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ + I+ V+GSA S++ + K + ++ Q+++++ Sbjct: 173 MEI-VIAASKDAILMVEGSASE--VSENDLLEAIFFGKQAVQGILAAQEELVAK 223 >gi|53804618|ref|YP_113771.1| polynucleotide phosphorylase/polyadenylase [Methylococcus capsulatus str. Bath] gi|81682222|sp|Q609C6|PNP_METCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|53758379|gb|AAU92670.1| polyribonucleotide nucleotidyltransferase [Methylococcus capsulatus str. Bath] Length = 691 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 89/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R I++ V GS L G+T L ATL + + G Sbjct: 313 RIDGRDLSTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDAQLIDALEGEYKE 372 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R +++++ I I + Sbjct: 373 NFMLHYNFPPYCVGETGAIGSPKRREIGHG----RLAKRGVQAIMPTMDEFPYVIRIVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G+ +AL D + + +L+G A+ + D+ Sbjct: 429 ITESNGSSSMASVCGSSLALMDAGVPTKGAVAGIAMGLILEGEEFAV---------LSDI 479 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + + + L+ A++ ++ Sbjct: 480 MGDEDHLGDMDFKVAGTRDG-VTALQMDIKIDGITPEIMRQALHQAREGRMHILDKMAQA 538 Query: 238 I 238 + Sbjct: 539 L 539 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 26/169 (15%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q++ + + ++ Sbjct: 74 GGFFKRE---GRPSEKETLTARLIDRPIRPLFPDGFTHEVQVVATVMSLNPEVDPDIPSM 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL KG + A G + G +++ D ++D Sbjct: 131 LGASAALTLSGL-------------PFKGPIGAARVGFVNGAYVLNPDGSVVEGSELDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 T + ++ +E ++ + A I +L + Sbjct: 178 VAGTANAVLMV---ESEAKILPEEVMLGAVVFGHEQMQTAIRAINELAE 223 >gi|51892669|ref|YP_075360.1| polynucleotide phosphorylase/polyadenylase [Symbiobacterium thermophilum IAM 14863] gi|81388937|sp|Q67P77|PNP_SYMTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|51856358|dbj|BAD40516.1| polynucleotide phosphorylase [Symbiobacterium thermophilum IAM 14863] Length = 762 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R GR ++R I + GS L + G T +L+ TL M + + Sbjct: 328 IRPDGRSLTEIRPIECAVDLLPRPHGSGLFQRGQTQVLSICTLGTLGDMQKLDDLTLEET 387 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL V+ I + Sbjct: 388 KRFMHHYNFPPYSVGETRPLRGPGRREIGHG----ALAERALEPVIPPEEEFPYTIRVVS 443 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 +V++++G + A++ G+ +AL +K VA ++ G++ Sbjct: 444 EVLESNGSSSMASVCGSTLALMAAGV-------------PIKAPVAGVAMGLVEDPETGR 490 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED+ D+D T G + +Q + + S++ L A++ + Sbjct: 491 YAVLTDIQGIEDALGDMDFKVAGTKKG-VTALQMDMKISGTSREILEKALMQAREGRMFI 549 Query: 231 IKLQKDVISNE 241 ++ IS Sbjct: 550 MEKMLACISEP 560 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 85/236 (36%), Gaps = 32/236 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R ++L ++K A GS LV +GD+ +L TA T E V + + G + Sbjct: 28 RTMTLETGRLAKQASGSVLVNYGDSVVLCTAVGSATPREGVDFFPLTVDYEERMYSVGRI 87 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P GN +RE GR ++ R+ R +R + Q++ + D Sbjct: 88 P---GNWFRRE---GRPTSKAILWARLTDRPIRPLFPEGFRNDVQVVCTVLSVDPDHPVE 141 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + GA AL +G + + G++ G +++ + + Sbjct: 142 IMGMIGASAAL-------------TISDIPFEGPIGGVIVGLVDGQFVINPTAEQQERSE 188 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA-----DLIKLQKDV 237 + T+ ++ V+ A+ + + + I + ++Q +V Sbjct: 189 MHLVVAGTEHA-VLMVEAGAKEVP--EQTMLDAILFGHEVIKNTIIPTIKQMQAEV 241 >gi|115522221|ref|YP_779132.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris BisA53] gi|122298071|sp|Q07V82|PNP_RHOP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115516168|gb|ABJ04152.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris BisA53] Length = 721 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R+I V A GS L G+T L TL ++ G Sbjct: 316 RIDGRDSTTVRQIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RAL V+ + + + Sbjct: 376 QFLLHYNFPPFSVGETGRMGGTKRREIGHG----KLAWRALHPVLPPHHEFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD G I +Q + A +++ L AK+ ++ Sbjct: 483 LGDEDHLGDMDFKVAGTDHG-ITSLQMDIKIAGITEEIMKVALGQAKEGRIHILGEMSKA 541 Query: 238 ISN 240 ++N Sbjct: 542 LTN 544 Score = 84.0 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 77/235 (32%), Gaps = 36/235 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T T E V + T G + Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYIEKTYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ AL KG + A G + +++ E Sbjct: 128 ILALVATSAALTLSGA-------------PFKGPIGAARVGFINDEYVLNPVLDEMIETQ 174 Query: 187 VDANFVMTDSGHIV------EVQGSAERAT--FSQDHF----FAMLNLAKDRIAD 229 +D T ++ E+ F HF A++ LA+ + Sbjct: 175 LDLVVAGTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKE 229 >gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus weihenstephanensis KBAB4] gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603] gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST196] gi|226702619|sp|A9VT44|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus weihenstephanensis KBAB4] gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST196] gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603] Length = 717 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVLPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDM 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|15599934|ref|NP_253428.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa PAO1] gi|107103839|ref|ZP_01367757.1| hypothetical protein PaerPA_01004910 [Pseudomonas aeruginosa PACS2] gi|116052887|ref|YP_793204.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa UCBPP-PA14] gi|218893835|ref|YP_002442704.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa LESB58] gi|254238523|ref|ZP_04931846.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa C3719] gi|254244358|ref|ZP_04937680.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa 2192] gi|296391567|ref|ZP_06881042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa PAb1] gi|313109720|ref|ZP_07795660.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa 39016] gi|81539753|sp|Q9HV59|PNP_PSEAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|122257102|sp|Q02FT2|PNP_PSEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702678|sp|B7V1F2|PNP_PSEA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|9951002|gb|AAG08126.1|AE004888_1 polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa PAO1] gi|115588108|gb|ABJ14123.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|126170454|gb|EAZ55965.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa C3719] gi|126197736|gb|EAZ61799.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa 2192] gi|218774063|emb|CAW29879.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa LESB58] gi|310882162|gb|EFQ40756.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa 39016] Length = 701 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R + + V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGERKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R GR R R+ R + +++ I + + Sbjct: 376 AFMLHYNFPPFSVGE-CGRMGSPGR---REIGHGRLARRGVAAMLPTQDEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D +K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGV-------------PVKAPVAGIAMGLVKEGEKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD G + +Q + +++ L A + +++ Sbjct: 479 LTDILGDEDHLGDMDFKVAGTDKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQ 537 Query: 234 QKDVISNE 241 VI+ Sbjct: 538 MNQVIAKP 545 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 28/229 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ LV D +L T + E + + + T G +P Sbjct: 15 VTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQEKTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + + Q++ A Sbjct: 74 --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTNKKSDPDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187 A+ G AL G + A G I++ Y + + + Sbjct: 129 AMIGTSAALAISGI-------------PFAGPIGAARVGFHPEIGYILNPTYEQLQSSSL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D T+ ++ +E ++D + A D +I+ K+ Sbjct: 176 DMVVAGTEDAVLMV---ESEADELTEDQMLGAVLFAHDEFQAVIRAVKE 221 >gi|294670819|ref|ZP_06735675.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307306|gb|EFE48549.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 701 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 95/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALIAVLPEPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+ + A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K+ Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALEQAKEARLYILAQMKEA 541 Query: 238 I 238 + Sbjct: 542 V 542 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 28/234 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T +++V + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTADKEVKAGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSLDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G G +++ E +D Sbjct: 130 AMIGASAALV-------------LSGVPFAGPIGAARVGYADGAYLLNPTKSELEKSQLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T ++ +E +D + +++ +I + +++EV Sbjct: 177 LVVAGTAKAVLMV---ESEAQILPEDVMLGAVVYGHEQMQAVIAAINE-LADEV 226 >gi|297617194|ref|YP_003702353.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus lipocalidus DSM 12680] gi|297145031|gb|ADI01788.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus lipocalidus DSM 12680] Length = 717 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R+ GR+ N++R +S + GS L G T +L+ A EE++ + + Sbjct: 312 IRVDGRRLNEIRPVSCEVGILPRTHGSGLFTRGQTQVLSVTTLGAVGEEQILDGLGVEES 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + +AL +V+ I + Sbjct: 372 KRYLHHYNFPPYSVGETRPIRGPGRREIGHG----ALAEKALEAVLPSQEEFPYTIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T ++ G+ ++L +K V+ I+ G++ Sbjct: 428 EVLESNGSTSMGSVCGSTLSLMHAGV-------------PIKRPVSGIAMGLVKEGDRFA 474 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D + G + +Q + +++ A L AK+ ++ Sbjct: 475 VLSDIQGIEDALGDMDFKVAGSAEG-VTALQMDIKIPGVTREILHAALKQAKEGRMYIMD 533 Query: 233 LQKDVISNE 241 + IS Sbjct: 534 IMMKAISQP 542 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 86/234 (36%), Gaps = 27/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + V+K A G+ L+ +GDT +L TAT E + + + G + Sbjct: 13 RPLRVEIGKVAKQANGAALLYYGDTVVLVTATASKEPREGIDFFPLTCDYEERLYAVGRI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R++ R +R + ++ + D Sbjct: 73 P---GGFIKRE---GRPTEAAILSARLMDRPIRPLFPKGFRNDVHVVATVMSVDQDNPPN 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA +AL G + A+ GM+ G +++ + + Sbjct: 127 VTAIIGASIALS-------------ISDIPFAGPIGAVIVGMVDGEFVINPTVEQSARSQ 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T IV V+ A ++ + A + I +I Q+ +++ Sbjct: 174 MHLTVGGTRDA-IVMVEARANEVP--EETMLDAIFFAHEEIKRIIDFQEKIVAE 224 >gi|85706001|ref|ZP_01037097.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217] gi|85669589|gb|EAQ24454.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217] Length = 713 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R I + GS L G+T L TL + HG + Sbjct: 318 RIDGRRLDEIRSIVCETGLLPRTHGSSLFTRGETQALVVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPPATDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKTSVAGVAMGLVLEEDGSFA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + A + + L AK ++ Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTADG-ITSLQMDIKVAGITPEIMKKALEQAKAGRLHILG 539 Query: 233 LQKDVISN 240 +S Sbjct: 540 EMDKALSG 547 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 76/226 (33%), Gaps = 33/226 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L +++ A+G+ + G+T ++ T ++ +T Y + Sbjct: 16 LTLETGKIARQADGTVIATLGETSVMANVTFAKEAKP---GQDFFPLTVHYQERYYAAGK 72 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++ C V+ D Sbjct: 73 VPGGFFKREA---RPSEKETLTARLIDRPIRPLFVPGFKHET--LVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182 A+ AL G +A G + G I++ + + Sbjct: 128 IVAMIATSAALTISGA-------------PFMGPIAGCRVGFVDGEYILNPEIDDMHNLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 + + + V+ + V + S E +++ + A ++I Sbjct: 175 NNPEQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAVTFAHEQIQ 219 >gi|71891895|ref|YP_277625.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123747829|sp|Q493T3|PNP_BLOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71796001|gb|AAZ40752.1| polynucleotide phosphorylase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 699 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR ++ +R+I + + GS L GDT L TL + + + Sbjct: 316 LRIDGRSQDTIRKIDIKTGILPRTHGSALFTRGDTQALVAVTLGTERDAQNIDGLTGIRV 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G A R+ G R+ R + +V+ + I + Sbjct: 376 DRFLLHYNFPPYCVGEIGVIGAPKRREIGHG----RLAKRGMLAVMPNANEFPYTIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A+I G +AL D +K VA ++ G++ Sbjct: 432 EITESNGSSSMASICGTSLALMDAGV-------------PIKAAVAGVAMGLIKEGNDFV 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D + G I +Q + + D L AK+ ++ Sbjct: 479 VLSDIVSDEDHIGDMDFKVSGSRQG-ITALQMDIKTDGITYDIINIALKKAKNARLQILD 537 Query: 233 LQKDVIS 239 + + +I Sbjct: 538 VMEQIIK 544 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 30/226 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++ A + +V DT +L T + + + + T G P G + Sbjct: 23 IARQANAAVMVSMSDTTVLVTVVSSNQVRLEQDFFPLVVNYQERTYAAGKFP---GGFFR 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR R+I R +R + + Q++ + AI G Sbjct: 80 RE---GRPSENETLTSRLIDRPIRPLFPKGFINDVQVVATVVSVNPQVNPDIVAIIGVSA 136 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL G + A G + +++ E S +D T+ Sbjct: 137 ALS-------------LSDIPFFGPIGAARVGYIKNQYVLNPTTTELSNSKLDLVISGTE 183 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 S +I+ V+ +E S+ + ++ I ++ KL K V Sbjct: 184 S-NILMVE--SESCLLSEKEILDAIIFGHEQQQIVIHNINKLVKKV 226 >gi|126663253|ref|ZP_01734251.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium BAL38] gi|126624911|gb|EAZ95601.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium BAL38] Length = 719 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 84/244 (34%), Gaps = 20/244 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ ++R I GS L G+T L TATL E Sbjct: 319 RLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQIDSPSEQGEE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG S R+ G + RAL++++ I I + Sbjct: 379 KFYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKNMIPAE--NPYTIRIVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++++G + A + +AL D M + + + G A+ + D+ Sbjct: 433 VLESNGSSSMATVCAGTLALMDAGVQMIRPVSGIAMGLITDGERFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + + L A+D ++ + Sbjct: 484 LGDEDHLGDMDFKVTGTSEG-ITACQMDIKIDGLKYEIMEQALAQARDGRLHILGKLTET 542 Query: 238 ISNE 241 ++ Sbjct: 543 LAKP 546 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 76/228 (33%), Gaps = 27/228 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGML 66 R I++ ++K A+GS +V+ G T +L T K I + A G Sbjct: 16 RSITIETGRLAKQADGSVVVRIGKTVILGTVVSARKASPGIDFLPLTVDYREKFAAAGRF 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KREA R R++ R LR + Q++I D Sbjct: 76 P---GGFFKREA---RPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLMSHDED---- 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + + ++ G + G I++ + D Sbjct: 126 ---------VMPDALAGLAASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSD 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 +D + + I V+G E S+ + A + I I Q Sbjct: 177 IDM-MIGASTDSIAMVEG--EMKEISEAEMLEAIKFAHEHIKVQIAAQ 221 >gi|189499525|ref|YP_001958995.1| polynucleotide phosphorylase/polyadenylase [Chlorobium phaeobacteroides BS1] gi|226702633|sp|B3EMN6|PNP_CHLPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189494966|gb|ACE03514.1| Polyribonucleotide nucleotidyltransferase [Chlorobium phaeobacteroides BS1] Length = 734 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 91/244 (37%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R IS+ + A GS L G+T L TL K + +T Sbjct: 332 RLDGRKLEEVRPISIELGLIPRAHGSALFTRGETQALVVLTLGTKKDAQMIDTLLDDTEK 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + V R+ G + RA++ VV + I + + Sbjct: 392 RFMLHYNFPPFSVGETGRVGGVGRREIGHG----NLAERAVKKVVPSESEFPYTIRLVSE 447 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ GA +A D + + + + + A+ + D+ Sbjct: 448 ILESNGSSSMASVCGATLAAMDGGVPLTKPVSGIAMGLIKEDDNYAV---------LSDI 498 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + L +K+ ++ + Sbjct: 499 LGNEDHLGDMDFKVAGTRDG-ITACQMDIKIDGLDYHILEKALEQSKNGRLHILDKMTES 557 Query: 238 ISNE 241 I++ Sbjct: 558 IADP 561 Score = 94.8 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 83/229 (36%), Gaps = 28/229 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGMLP 67 I++ K A+G+ +V+ GDT ++ T P + ++ G P Sbjct: 15 ITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPPSPNQDFFPMQVEYREKYYAAGKFP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE+ R + R+I RALR + QIII VI +D Sbjct: 75 ---GGFIKRES---RPSEKEILSARLIDRALRPLFPNGYYQDTQIIIS--VISSD-QLND 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A + G A + ++ + G + G +++ E + D+ Sbjct: 126 ADVLGGIAA----------SAAIMVSDIPFANSMSEVRVGRINGEFVINPTINELAQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D + T+ I ++G E S+ + + I + LQ D Sbjct: 176 DISIGGTND-TICMLEG--EMNEISEAEMLEAIRFGHEAIKKICSLQDD 221 >gi|224825869|ref|ZP_03698973.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum 2002] gi|224602093|gb|EEG08272.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum 2002] Length = 719 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T + TL +E++ + Sbjct: 316 RIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVTTLGTQRDEQIIDALAGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + R+ G R+ RAL V+ + + + + Sbjct: 376 RFMLHYNFPPYSTGEAGRMGPPKRREIGHG----RLAKRALAQVLPSADEFGYSMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL + ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLALLNAGVPLKAHVAGIAMGLILEGNRFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L+ AK+ ++ L K+ Sbjct: 483 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALDQAKEGRLHILGLMKEA 541 Query: 238 ISNE 241 + Sbjct: 542 VEGP 545 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 77/231 (33%), Gaps = 38/231 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ LV DT +L + + V + + T G +P Sbjct: 16 VTLETGEVARQASGAVLVTMEDTVVLVSVVGSQNVKPGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDVQIVATVMSLNPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G G I++ E T +D Sbjct: 130 AMIGASAALA-------------ISGLPFNGPIGAARVGYANGDYILNPTKTELETSQLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADL 230 T ++ V+ A+ F D A A I +L Sbjct: 177 LVVAGTHRA-VLMVESEAKELPEAVMLGAVVFGHDQLQA----AIKAINEL 222 >gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia] Length = 227 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 83/238 (34%), Gaps = 30/238 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR QMR I + +GSCL K G T ++ T+ + Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPRA------KTQSELLLI 58 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 EY + P S KR + + E + + +++ L G +I I VIQ Sbjct: 59 EYSVSPFSNIE-SKRSSKFDKDYSMFAEN---LKESFENLIILDENGKSEISISVCVIQN 114 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG +++A +AL D M K + +++ G+ G IVDL E Sbjct: 115 DGSSKSAVFNAITLALLDAGVSM-------------KDFLVSVTVGLDQGNLIVDLTQEE 161 Query: 182 DSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + E+ + Q + LA + ++ + K+ Sbjct: 162 SKTAQGELTISYQSRKQKIDFYEL----KTLKLQQQEMDQLSKLAVSKADEIYQWMKE 215 >gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM 2048] gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM 2048] Length = 717 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVLPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.5 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDM 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|229162743|ref|ZP_04290700.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803] gi|228620625|gb|EEK77494.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803] Length = 712 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|187611315|sp|Q2S1P1|PNP_SALRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 712 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 20/245 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56 R+ GR + +R++ + GS + G+T +L + TL + V +T Sbjct: 322 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 381 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G S + RALR V+ I I+ Sbjct: 382 S-FYLHYRFPPFSVGEASYLRGPKRREIGHSM----LAERALRPVIPEQDEFPYTIRINA 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 DV++++G + A++ +AL D +E + V + + D Sbjct: 437 DVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD---------ETTVLTD 487 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S+D L ++D ++ ++ Sbjct: 488 ILGQEDHLGDMDFKLTGTRDG-ITACQMDMKIEGLSRDVMLKALKQSRDARHHILDRMEE 546 Query: 237 VISNE 241 I+ Sbjct: 547 TIAEP 551 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67 R +SL ++K A+GS + + GDT +L+TATL + V + + A G +P Sbjct: 16 RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNESNFFPLTVDYREKFAAGGKVP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I RA+R + ++ Sbjct: 76 ---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFV----------- 118 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I+ D + + + G A + G + G IV+ + D+ Sbjct: 119 --ISAGQDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D V +V V+G AE + ++ L++A I L + Q ++ Sbjct: 177 DL-VVAGKEDALVMVEGEAEEIS--EESMIEALDVAHRSIRRLCEGQHRLVEQ 226 >gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis Bt407] gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis Bt407] gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 712 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|34557289|ref|NP_907104.1| polynucleotide phosphorylase/polyadenylase [Wolinella succinogenes DSM 1740] gi|81833066|sp|Q7M9I4|PNP_WOLSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|34483005|emb|CAE10004.1| NUCLEOTIDYLTRANSFERASE [Wolinella succinogenes] Length = 736 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR ++R I + + A S L G+T L ATL + + + Sbjct: 347 RADGRGLKEVRPIDIQTNILPNAHASALFTRGETQALVVATLGGDMDAQSYELLTEKGSS 406 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G A R+ G + RAL + G++ I + Sbjct: 407 KERFMVHYNFPSFSVGEAGMVGAPGRRELGHG----NLAKRALEPTI--EEWGAQTIRLV 460 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL + + +++ AI + Sbjct: 461 SEILESNGSSSMATVCGGSLALKAAGINTTALVAGVAMGLIVEAEKHAI---------LT 511 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T +G I +Q + S + L AK+ ++ + + Sbjct: 512 DIMGLEDHDGDMDFKIAGTSTG-ITAMQMDIKLGGLSMEILKEALYQAKEGREHILGIME 570 Query: 236 DV 237 Sbjct: 571 KA 572 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 64/182 (35%), Gaps = 14/182 (7%) Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG-- 71 + ++K A GS L + G + LL + E +T +Y + G Sbjct: 16 TFEFGAIAKQANGSVLYRCGKSVLLASVCYESDE---RVKEDFLPLTVQYIEKSYAAGKF 72 Query: 72 --NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 +KRE+ + G R+I R+LR + QI + Q D +T A Sbjct: 73 PGGFIKRES---KPGDFETLTSRIIDRSLRPLFPKGYAHPTQITVMVLSAQNDADLQTMA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL--DYGEDSTIDV 187 + A AL + + ++ + + G + +DL E+ + + Sbjct: 130 LNAASAALFVSDIPLRKPVHGLRIGK-INGALVVNPTTKEMSESTLDLFVSGVEEDLLMI 188 Query: 188 DA 189 + Sbjct: 189 EM 190 >gi|299534733|ref|ZP_07048063.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus fusiformis ZC1] gi|298729821|gb|EFI70366.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus fusiformis ZC1] Length = 704 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 89/245 (36%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S + + GS L G T L T A + ++ + + Sbjct: 314 IRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVEES 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL +V+ ++ I Sbjct: 374 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEAVIPDESIFPYTIRCVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G T A+I + +A+ D ++ + + KG +I + D Sbjct: 430 EVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSI---------LTD 480 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L AK +++ Sbjct: 481 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539 Query: 237 VISNE 241 + Sbjct: 540 TLPEP 544 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L TAT+ + + + + G +P Sbjct: 14 RPLVIEVGQLAKQANGAALVRYGDTSVLATATMSKSPKPLDFFPLTVNYEERLYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I D + Sbjct: 74 ---GGFIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDPDCTSEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G IV+ + + + Sbjct: 128 AAMVGSSLALA-------------ISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNRSTI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + I V+ A ++ + + I +I Q+ +++ Sbjct: 175 HLSVAGNKDA-INMVEAGALEVP--EEIMLEAIMFGHEEIKKIIAFQEQIVAE 224 >gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 200] gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 200] Length = 712 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|218898959|ref|YP_002447370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842] gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|226702616|sp|B7IUG5|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842] gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar sotto str. T04001] Length = 712 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|332295429|ref|YP_004437352.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium narugense DSM 14796] gi|332178532|gb|AEE14221.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium narugense DSM 14796] Length = 721 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 25/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---GW 58 R+ GR +++R IS+ + A GS L G T L+ ATL + I +T + Sbjct: 320 RVDGRSLDEIRPISIQVGLLPRAHGSALFTRGQTQALSIATLGTQEDSQIIDTLYQSSNE 379 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116 I Y M + EA R GR EI + +AL V+ + I + Sbjct: 380 IRKRY-MHHYNFPGFSVGEARPSRGPGRR-EIGHGALAEKALLPVLPKESDFPYTIRVVS 437 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPI 174 ++++++G + A+ G+ ++L D + HV I+ G++ I Sbjct: 438 EILESNGSSSMASACGSSLSLMDAGV-------------PISKHVGGIAMGLIYENEEII 484 Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + D + A + +I+ Sbjct: 485 ILSDITGLEDAIGDMDFKVTGTIDG-VSALQLDVKVPGIPIDALSKAIKKAYEGRKSIIE 543 Query: 233 LQKDVIS 239 IS Sbjct: 544 KMNQAIS 550 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 81/231 (35%), Gaps = 27/231 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 I++ + K A GS V+ GDT + + AT+ + G P Sbjct: 17 INIETGLLAKQANGSVTVRSGDTIVFSAATMSKEARSDIDFMPLVVDFDEKMYAAGKFP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+ R+I R++R + I I D Sbjct: 76 --GGFFKRE---GRPSERAILYSRIIDRSIRPLFPKGLRNDVCISSFPLSIDNDFPVDVL 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 +I + AL G V A+ G + I++ + D+D Sbjct: 131 SIIASSAALC-------------ISDIPFDGPVGAVRVGEIDKKFILNPTIDQIEKSDID 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 V +I+ ++GS +D ++N A I + +QK++IS Sbjct: 178 IVIV-GKEDNILMIEGSFNEIP--EDKIIEIINYALPAITKICDIQKELIS 225 >gi|251772265|gb|EES52835.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum ferrodiazotrophum] Length = 709 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR ++R I++ + GS L G+T L+ ATL +E+ + H Sbjct: 315 IRADGRSTTEIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDSLEGESH 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ I + Sbjct: 375 KRFMLHYNFPAFSVGEVKPMRGPGRREIGHG----NLAERALIPVLPSKDDFPYSIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 D+++++G T A + G +A+ D +K VA I+ G++ Sbjct: 431 DILESNGSTSMATVCGGTLAMMDAGI-------------PIKAPVAGIAMGLIKEGDRIA 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D TD G + VQ + + + L A+ ++ Sbjct: 478 ILSDILGIEDHLGDMDFKVTGTDIG-VTAVQMDIKIKGITLEIMKKALEQARVGRIHIMG 536 Query: 233 LQKDVISN 240 K+ + + Sbjct: 537 KMKEALPS 544 Score = 88.6 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 32/236 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 + + + A+G+ ++ T ++ TA + V T +T +Y + G Sbjct: 15 VRIETGRMARQADGAAVLWVEGTVIIATAVAAKTVKP---GTDFLPLTVDYQERAYAAGK 71 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 KRE G+ R R++ R LR + Q+I V+ AD G T Sbjct: 72 IPGGFFKRE---GKPSEREILNSRLVDRPLRPLFPEGFYYDTQVIAS--VVSADRSGLTD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL + A+ G + G +++ D Sbjct: 127 VMAVVAASTAL-------------TISDIPFDDPLGAVRVGYVDGQFVINPDIEAQERSS 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D T I+ V+G A+ S++ F + A +I Q++ + ++ Sbjct: 174 LDLVVAGTADA-IMMVEGKADE--VSEELFLEAIRTAHAACQPIIAAQRE-LQKKI 225 >gi|83814865|ref|YP_445890.1| polynucleotide phosphorylase/polyadenylase [Salinibacter ruber DSM 13855] gi|83756259|gb|ABC44372.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber DSM 13855] Length = 722 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 20/245 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56 R+ GR + +R++ + GS + G+T +L + TL + V +T Sbjct: 332 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 391 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G S + RALR V+ I I+ Sbjct: 392 S-FYLHYRFPPFSVGEASYLRGPKRREIGHSM----LAERALRPVIPEQDEFPYTIRINA 446 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 DV++++G + A++ +AL D +E + V + + D Sbjct: 447 DVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD---------ETTVLTD 497 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S+D L ++D ++ ++ Sbjct: 498 ILGQEDHLGDMDFKLTGTRDG-ITACQMDMKIEGLSRDVMLKALKQSRDARHHILDRMEE 556 Query: 237 VISNE 241 I+ Sbjct: 557 TIAEP 561 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67 R +SL ++K A+GS + + GDT +L+TATL + V + + A G +P Sbjct: 26 RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNESNFFPLTVDYREKFAAGGKVP 85 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I RA+R + ++ Sbjct: 86 ---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFV----------- 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I+ D + + + G A + G + G IV+ + D+ Sbjct: 129 --ISAGQDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDI 186 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D V +V V+G AE + ++ L++A I L + Q ++ Sbjct: 187 DL-VVAGKEDALVMVEGEAEEIS--EESMIEALDVAHRSIRRLCEGQHRLVEQ 236 >gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 4222] gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis IBL 4222] Length = 712 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|126652561|ref|ZP_01724726.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905] gi|126590689|gb|EAZ84805.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905] Length = 704 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R++S + + GS L G T L T A + ++ + + Sbjct: 314 IRPDGRKLDEIRQLSSETGILQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVEES 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL +V+ ++ I Sbjct: 374 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEAVIPDESVFPYTIRCVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G T A+I + +A+ D ++ + + KG +I + D Sbjct: 430 EVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSI---------LTD 480 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L AK +++ Sbjct: 481 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539 Query: 237 VISNE 241 ++ Sbjct: 540 TLAEP 544 Score = 89.4 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+TAT+ + + + + G +P Sbjct: 14 RPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKPLDFFPLTVNYEERLYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I +D + Sbjct: 74 ---GGFIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G IV+ + + + Sbjct: 128 AAMVGSSLALA-------------ISDIPFDGPIAGVQVGYINGEFIVNPTVEQSNQSTI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + I V+ A ++ + + I +I Q+ +++ Sbjct: 175 HLSVAGNKDA-INMVEAGALEVP--EEVMLEAIMFGHEEIKKIIAFQEQIVAE 224 >gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus E1410] gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M876] gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C160] gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus D139] gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C101] gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|81651256|sp|Q6GHG1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 68-397] gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus E1410] gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M876] gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C101] gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus D139] gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus C160] gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS00] Length = 698 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ +A I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + +++ L A+ +++ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539 Query: 233 LQKDVISNE 241 I Sbjct: 540 HMLQTIDQP 548 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D + Sbjct: 75 ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+ ++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223 >gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JKD6159] Length = 698 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ +A I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + +++ L A+ +++ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539 Query: 233 LQKDVISNE 241 I Sbjct: 540 HMLQTIDQP 548 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D + Sbjct: 75 ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+ ++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223 >gi|294507800|ref|YP_003571858.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8] gi|294344128|emb|CBH24906.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8] Length = 745 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 20/245 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56 R+ GR + +R++ + GS + G+T +L + TL + V +T Sbjct: 355 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 414 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G S + RALR V+ I I+ Sbjct: 415 S-FYLHYRFPPFSVGEASYLRGPKRREIGHSM----LAERALRPVIPEQDAFPYTIRINA 469 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 DV++++G + A++ +AL D +E + V + + D Sbjct: 470 DVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD---------ETTVLTD 520 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S+D L ++D ++ ++ Sbjct: 521 ILGQEDHLGDMDFKLTGTRDG-ITACQMDMKIEGLSRDVMLKALKQSRDARHHILDRMEE 579 Query: 237 VISNE 241 I+ Sbjct: 580 TIAEP 584 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67 R +SL ++K A+GS + + GDT +L+TATL + V + + A G +P Sbjct: 49 RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNESNFFPLTVDYREKFAAGGKVP 108 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I RA+R + ++ Sbjct: 109 ---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFV----------- 151 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I+ D + + + G A + G + G IV+ + D+ Sbjct: 152 --ISAGQDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDI 209 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D V +V V+G AE + ++ L++A I L + Q ++ Sbjct: 210 DL-VVAGKEDALVMVEGEAEEIS--EESMIEALDVAHRSIRRLCEGQHRLVEQ 259 >gi|170077686|ref|YP_001734324.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. PCC 7002] gi|226704826|sp|B1XJU0|PNP_SYNP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169885355|gb|ACA99068.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. PCC 7002] Length = 714 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 27/235 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLT---TATLEEKVPMWIRNTKHGWITAEYGMLP 67 REI L + A GS L++ GDT +L TA + + + G +P Sbjct: 13 REIRLKTGLFAPQAGGSVLIESGDTAVLVSATTAPGRQGIDFLPLLVDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR R+ I R+I R +R + QI+ + + Sbjct: 73 ---GGYLRRE---GRPPERATLISRLIDRPMRPLFPQWLRDDIQIVATTLSLDEEVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA VA G +AA+ G++ I++ Y E D+ Sbjct: 127 LAVTGASVATLLAGL-------------PFYGPMAAVRVGLVGDDFILNPTYREMMNGDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D T G ++ V+ A + + ++ A + I +LI+ Q+ + E+ Sbjct: 174 DLVVAGTPDG-VIMVEAGANQ--LPEADMIEAIDFAYEAIQELIEAQR-ALMKEL 224 Score = 98.6 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 19/246 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55 +R+ GR+ +Q+R IS V A GS L G T +L+ ATL + + Sbjct: 323 VRVDGRKLDQVRPISCRTAVLPRAVHGSGLFNRGLTQVLSIATLGTPGDAQEMDDLHPSD 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G + R+ G + RAL V+ I + Sbjct: 383 EKRYLHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPPKDEFPYVIRVV 438 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V+ ++G T ++ G+ +AL D + + + + +G + Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMDAGVPIAKPVSGAAMGLIKEGKEV---------RILT 489 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I +Q + + + + A +++ Sbjct: 490 DIQGIEDFLGDMDFKVAGTADG-ITALQMDMKITGLAVEVVAEAIKQALPARLHILEKMT 548 Query: 236 DVISNE 241 DVI+ Sbjct: 549 DVIAEP 554 >gi|150026085|ref|YP_001296911.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium psychrophilum JIP02/86] gi|187610264|sp|A6H185|PNP_FLAPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149772626|emb|CAL44109.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 711 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 20/244 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ ++R I GS L G+T L TATL E Sbjct: 319 RLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQIDSPSQQGEE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG S R+ G + RAL++++ I + + Sbjct: 379 KFYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKNMIPAD--CPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++++G + A + ++L D M + + + G A+ + D+ Sbjct: 433 VLESNGSSSMATVCAGTLSLMDAGIQMIRPVSGIAMGLITDGERFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + + A L A+D ++ + + Sbjct: 484 LGDEDHLGDMDFKVTGTSEG-ITACQMDIKIDGLKYEIMEAALAQARDGRLHILNILTET 542 Query: 238 ISNE 241 ++ Sbjct: 543 LATP 546 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 27/228 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGML 66 R I++ ++K A+GS +V+ G T +L T K I + A G Sbjct: 16 RNITIETGRLAKQADGSVVVRIGKTVILGTVVSSRKATPGIDFLPLTVDYREKFAAAGRF 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KREA R R++ R LR + Q++I ++ D Sbjct: 76 P---GGFFKREA---RPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMI--QLMSHD---- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + + ++ G + G I++ + D Sbjct: 124 -------EEVMPDALAGLAASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSD 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 +D + + I V+G E S+ + A + I I Q Sbjct: 177 IDM-MIGASTDSIAMVEG--EMKEISEAEMLEAIKFAHEHIKVQIAAQ 221 >gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MW2] gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MSSA476] gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|81649409|sp|Q6G9T9|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81762564|sp|Q8NWY9|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MW2] gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MSSA476] gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21193] Length = 698 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ +A I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + +++ L A+ +++ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539 Query: 233 LQKDVISNE 241 I Sbjct: 540 HMLQTIDQP 548 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D + Sbjct: 75 ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+ ++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223 >gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ED133] Length = 698 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ +A I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + +++ L A+ +++ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539 Query: 233 LQKDVISNE 241 I Sbjct: 540 HMLQTIDQP 548 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D + Sbjct: 75 ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+ ++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223 >gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus TW20] Length = 698 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ +A I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + +++ L A+ +++ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539 Query: 233 LQKDVISNE 241 I Sbjct: 540 HMLQTIDQP 548 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D + Sbjct: 75 ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D I V+ A ++ + + I L+ Q+ ++ Sbjct: 176 DLEVA-GHKDAINMVEAGASE--ITEQEMLEAIFFGHEEIQRLVDFQQQIV 223 >gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus N315] gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus COL] gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JH9] gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus JH1] gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. Newman] gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu3] gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus TCH130] gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9781] gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9763] gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9719] gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9635] gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9299] gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8115] gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6300] gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6224] gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5948] gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5937] gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus D30] gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 930918-3] gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus ED98] gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8117] gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9765] gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A10102] gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus 132] gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9754] gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8819] gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus MR1] gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8796] gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694630|sp|Q5HGF7|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81705784|sp|Q7A5X7|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81781693|sp|Q99UJ8|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117940100|sp|Q2FHG4|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117940102|sp|Q2FZ20|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611294|sp|A7X1Q8|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611295|sp|A6QGH3|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037316|sp|A6U193|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037317|sp|A5ISF8|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037318|sp|A8Z3V4|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus N315] gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus str. Newman] gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus Mu3] gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus TCH130] gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9781] gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9763] gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9719] gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9635] gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9299] gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8115] gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6300] gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A6224] gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5948] gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus aureus A5937] gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 930918-3] gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus D30] gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus ED98] gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A10102] gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9765] gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8117] gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Staphylococcus aureus subsp. aureus ST398] gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus 04-02981] gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A9754] gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8819] gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus A8796] gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) (Vegetative protein 15) (VEG15) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS03] gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus subsp. aureus CGS01] gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus MRSA177] gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus O11] gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus O46] gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus 21189] Length = 698 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ +A I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + +++ L A+ +++ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539 Query: 233 LQKDVISNE 241 I Sbjct: 540 HMLQTIDQP 548 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D + Sbjct: 75 ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+ ++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223 >gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU121] Length = 699 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ ++ + I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTSDFPYTVRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + +++ L A+ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQG 533 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A ++ G + G +++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFLGPIAGVNVGYVDGKYVINPTVAEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + D I L+ Q+++I Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHDEIKRLVAFQQEII 223 >gi|51599057|ref|YP_073245.1| polynucleotide phosphorylase/polyadenylase [Borrelia garinii PBi] gi|51573628|gb|AAU07653.1| polyribonucleotide nucleotidyltransferase [Borrelia garinii PBi] Length = 715 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 309 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 368 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 369 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 423 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 424 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 470 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++ L A+ ++ Sbjct: 471 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILS 529 Query: 233 LQKDVISN 240 + VIS+ Sbjct: 530 VMDTVISD 537 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 4 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 58 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 59 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 112 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 113 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 159 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A S+D + ++ A + I + QK+ + Sbjct: 160 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFL 215 >gi|313891639|ref|ZP_07825246.1| polyribonucleotide nucleotidyltransferase [Dialister microaerophilus UPII 345-E] gi|313119917|gb|EFR43102.1| polyribonucleotide nucleotidyltransferase [Dialister microaerophilus UPII 345-E] Length = 697 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55 +R GR +++R I+ + GS L G T LT TL I + + Sbjct: 311 IRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLAPMNETQIIDDLTLVNE 370 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I +Y G R+ G + RAL V+ I + Sbjct: 371 KRYIH-QYNFPSYCVGETKSSRGPGRREIGHG----ALAERALEPVIPSVDEFPYAIRVV 425 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++++++G + A++ G+ ++L + + VA I+ G++ Sbjct: 426 SEILESNGSSSQASVCGSTMSLMNAGV-------------PIHAPVAGIAMGLVNEGEHF 472 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + S++ A L A Sbjct: 473 TILTDIQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIHGLSREILMAALKQAHKG 526 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 27/234 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + K A GS LV++GDT +L T E + + G + Sbjct: 12 RPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLTVDYEEKMYSVGKM 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR G + R+I R +R + D ++ + D Sbjct: 72 P---GGFLRRE---GRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSVDYDNAPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + GA ++ G VA + G + G +V+ + Sbjct: 126 LCGLLGASASIA-------------ISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERST 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ +++ I+ V+G A+ A S++ + A I L++ QK +I Sbjct: 173 MNITVAGSETA-ILMVEGGAKEA--SEEEVLDAIMYAHTVIKQLVEFQKKIIEK 223 >gi|187471096|sp|Q65ZW8|PNP_BORGA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 721 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++ L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILS 535 Query: 233 LQKDVISN 240 + VIS+ Sbjct: 536 VMDTVISD 543 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A S+D + ++ A + I + QK+ + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFL 221 >gi|27467869|ref|NP_764506.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis ATCC 12228] gi|57866764|ref|YP_188423.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis RP62A] gi|251810705|ref|ZP_04825178.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis BCM-HMP0060] gi|282876294|ref|ZP_06285161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis SK135] gi|293366762|ref|ZP_06613438.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|81674891|sp|Q5HPR7|PNP_STAEQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81843823|sp|Q8CST1|PNP_STAES RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27315414|gb|AAO04548.1|AE016747_45 polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis ATCC 12228] gi|57637422|gb|AAW54210.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis RP62A] gi|251805865|gb|EES58522.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis BCM-HMP0060] gi|281295319|gb|EFA87846.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis SK135] gi|291319063|gb|EFE59433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329736337|gb|EGG72609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU028] gi|329736660|gb|EGG72926.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU045] Length = 701 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 18/230 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + Sbjct: 318 IRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RALR ++ + I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTQDFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A+I G+ +AL D ++ + V + I + D Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED+ D+D T G I +Q + +++ L A+ Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQG 533 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+++I Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223 >gi|329724343|gb|EGG60855.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis VCU144] Length = 701 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 18/230 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + Sbjct: 318 IRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RALR ++ + I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTQDFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A+I G+ +AL D ++ + V + I + D Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED+ D+D T G I +Q + +++ L A+ Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQG 533 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+++I Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223 >gi|269215563|ref|ZP_06159417.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC 700122] gi|269131050|gb|EEZ62125.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC 700122] Length = 769 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 26/241 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMW--IRNTKHG 57 R GR ++R + + GS L + G T +++ ATL + I Sbjct: 345 RADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSVATLGLLNEAQRLDTIDPQTTR 404 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y P TG + A R+ G + RA+ V+ I + + Sbjct: 405 RYMHQYNFPPYCTGEVGRMGAPKRREVGHG----ALAERAILPVLPNEDEFPYSIRVVSE 460 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V++++G + A+ G+ +AL D +K V+ ++ G++ G I Sbjct: 461 VLESNGSSSMASTCGSCLALMDAGV-------------PIKAPVSGVAMGLIKEDDGVVI 507 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + S + L AK+ A ++ Sbjct: 508 LSDIQGLEDFLGDMDFKVTGTPEG-ITALQMDNKARGLSTEILGRALAQAKEGRAHILSA 566 Query: 234 Q 234 Sbjct: 567 M 567 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 28/230 (12%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++K A G+ LV+ G+T +L T+ + E+ + G +P G Sbjct: 47 FETGELAKQATGAVLVRQGETTVLVTSVISKEEKDYDFFPLTVDFMEKMYAVGRIP---G 103 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE GR + RM+ R +R ++ I + + Sbjct: 104 GYLKRE---GRASDKGTLTARMVDRPIRPGFAEGFKQEVHVVATTFAIDGENAPDCMCVG 160 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDLDYGEDSTIDVDA 189 G + S G VA + IV+ Y E T D++ Sbjct: 161 G-------------ASAALLIASAPFDGPVACVRIARNAETREFIVNPTYAEQETSDLEL 207 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T +I V+ A++ ++ A +N ++ IA + Q + +S Sbjct: 208 TIAGTKD-YISMVEAGADQ--VGEEDMLAAMNFGQEAIAAFCEKQAEFLS 254 >gi|242242557|ref|ZP_04797002.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis W23144] gi|242233984|gb|EES36296.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis W23144] gi|319401436|gb|EFV89646.1| polyribonucleotide nucleotidyltransferase [Staphylococcus epidermidis FRI909] Length = 701 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 18/230 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + Sbjct: 318 IRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RALR ++ + I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTQDFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A+I G+ +AL D ++ + V + I + D Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED+ D+D T G I +Q + +++ L A+ Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQG 533 Score = 89.0 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+++I Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223 >gi|322382340|ref|ZP_08056247.1| polynucleotide phosphorylase-like protein/polyadenylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153693|gb|EFX46068.1| polynucleotide phosphorylase-like protein/polyadenylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 699 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 87/242 (35%), Gaps = 26/242 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R I + GS L G T L T A + ++ + + Sbjct: 307 VRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEET 366 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RA+ V+ I + Sbjct: 367 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGARAIEQVIPSEEEFPYTIRLVS 422 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +VI+++G T A+I + +AL D +K VA I+ G++ Sbjct: 423 EVIESNGSTSQASICASMLALMDAGV-------------PIKAPVAGIAMGLIKDGQHFS 469 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +D L AK+ +++ Sbjct: 470 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKINGIDRDILHQALTQAKEGRMFILE 528 Query: 233 LQ 234 Sbjct: 529 KM 530 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +SL ++K A S LV++GDT +L T T + + + + G +P Sbjct: 6 RPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 65 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + + Sbjct: 66 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQECSPEI 119 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+TG AL + G + + G + G +++ + + D+ Sbjct: 120 AAMTGVSAALS-------------ISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDI 166 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I+ V+ A A ++ + ++I ++ +Q+ + Sbjct: 167 HLTVAGTKDA-IMMVEAGA--AEVPEEVMLEAIMFGHEQIKKIVAVQEQFVEE 216 >gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-28] gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-28] Length = 712 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|224534158|ref|ZP_03674738.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii A14S] gi|224514583|gb|EEF84897.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii A14S] Length = 724 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I Q + ++ L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIENVTKHLMRDALEQARIGRIHILS 535 Query: 233 LQKDVISN 240 + +ISN Sbjct: 536 IMNSIISN 543 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T E + + ++ Sbjct: 10 GR--DEL---VFETGFIAKQANGSVLATYGGSSVLATVCCSSNAREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A S+D + ++ A + I + QK+ + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDSAHEYIKQICNAQKEFL 221 >gi|91216373|ref|ZP_01253340.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus torquis ATCC 700755] gi|91185511|gb|EAS71887.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus torquis ATCC 700755] Length = 683 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 20/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR+ +++R I GS + G+T L T TL E + Sbjct: 281 LRLDGRKTDEIRPIWCEVAYLPSVHGSAIFTRGETQALATVTLGTSREASTIDMPTHQGE 340 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + RAL+ ++ S + I Sbjct: 341 EKFYLHYNFPPFCTGEAYPIRGTSRREIGHG----NLAQRALKGMIPES--NPYTVRIVS 394 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +A+ D M+ + + + G A+ + D Sbjct: 395 EVLESNGSSSMATVCAGTMAMMDAGIKMKKPVSGIAMGLISDGDRHAV---------LSD 445 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + + L A+ +++ D Sbjct: 446 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLPYEILVKALQQARAGRLHILEKLTD 504 Query: 237 VIS 239 IS Sbjct: 505 TIS 507 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 66/206 (32%), Gaps = 25/206 (12%) Query: 32 FGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 GDT LL T E K+ + + A G P G KREA + Sbjct: 1 MGDTMLLCTVVSSYKESKMDFFPLTVDYREKFAAAGRYP---GGFFKREARPSDGEVLTM 57 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 R++ R LR + Q++I D + D L + + Sbjct: 58 ---RIVDRVLRPLFPSDYRTETQVMIQLMSHDED-------------VMPDALAGLAASA 101 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 + ++ + G +++ + D+D + ++ V+G E Sbjct: 102 AIQLSDIPFETAISEARVARINGEFVINPSRSQLKESDIDM-IIGASMDSVMMVEG--EM 158 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQ 234 S++ + A + I ++ Q Sbjct: 159 KEISEEEMAEAIQFAHEHIKKQVEAQ 184 >gi|216263697|ref|ZP_03435692.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia afzelii ACA-1] gi|215980541|gb|EEC21362.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia afzelii ACA-1] Length = 722 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S++ I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMIPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I Q + ++ L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIENVTKQLMRDALEQARVGRIHILS 535 Query: 233 LQKDVISN 240 + VISN Sbjct: 536 IMNSVISN 543 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A S+D + ++ A + I + QK+ + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDSAHEYIKQICNAQKEFL 221 >gi|197117696|ref|YP_002138123.1| polynucleotide phosphorylase/polyadenylase [Geobacter bemidjiensis Bem] gi|257096691|sp|B5EI63|PNP_GEOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|197087056|gb|ACH38327.1| polyribonucleotide nucleotidyltransferase [Geobacter bemidjiensis Bem] Length = 696 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R IS + A GS L G+T + ATL V ++ +G Sbjct: 312 RIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R A R+ G + RAL+ V+ I I D Sbjct: 372 KFMLHYNFPPYSVGETSFRLAPGRREIGHGM----LAERALQQVLPKHDDFPYTIRIVSD 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G +++ D +K VA I+ G++ Sbjct: 428 ITESNGSSSMATVCGGSLSMMDAGI-------------PIKAPVAGIAMGLIKEGDDFAI 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ A L AK Sbjct: 475 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMSAALAQAKAG 526 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 32/236 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPRST 70 I++ ++K A G+ ++K GDT +L TA V M G+ +T Y + Sbjct: 14 ITIETGKIAKQASGAVMIKSGDTMVLVTA-----VAMKSAKEGQGFFPLTVNYQEKAYAG 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + KRE GR R+I R +R + + L QI+ D Sbjct: 69 GRIPGSFFKRE---GRPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKDNDPG 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ GA AL G +A + G + G I + ++ D Sbjct: 126 ILSMIGASAAL-------------MVSDVPFAGPIAGVKVGRVDGQFIANPTAEQEEKSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 ++ + I+ V+GSA S+D + + ++ Q + ++ +V Sbjct: 173 LEI-VIAASQDAILMVEGSA--CEVSEDDLLEAIFFGHKAVQPVLAAQLE-LAKKV 224 >gi|167465515|ref|ZP_02330604.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 705 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 87/242 (35%), Gaps = 26/242 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R I + GS L G T L T A + ++ + + Sbjct: 313 VRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEET 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RA+ V+ I + Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGARAIEQVIPSEEEFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +VI+++G T A+I + +AL D +K VA I+ G++ Sbjct: 429 EVIESNGSTSQASICASMLALMDAGV-------------PIKAPVAGIAMGLIKDGQHFS 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +D L AK+ +++ Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKINGIDRDILHQALTQAKEGRMFILE 534 Query: 233 LQ 234 Sbjct: 535 KM 536 Score = 95.2 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +SL ++K A S LV++GDT +L T T + + + + G +P Sbjct: 12 RPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + + Sbjct: 72 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQECSPEI 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+TG AL + G + + G + G +++ + + D+ Sbjct: 126 AAMTGVSAALS-------------ISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDI 172 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I+ V+ A A ++ + ++I ++ +Q+ + Sbjct: 173 HLTVAGTKDA-IMMVEAGA--AEVPEEVMLEAIMFGHEQIKKIVAVQEQFVEE 222 >gi|114649397|ref|XP_522661.2| PREDICTED: exosome complex component RRP43 isoform 4 [Pan troglodytes] Length = 276 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115 + P + SG G +Q + I + ++ L + + + Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 256 VTRHKEVKKLMDEVIKS 272 >gi|206602200|gb|EDZ38682.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group II '5-way CG'] Length = 713 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 18/244 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + +R I++ + GS L G+T L+ ATL + G T Sbjct: 319 VRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDALEGEST 378 Query: 61 ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL+ V+ I + Sbjct: 379 KRFMLHYNFPPFSVGETKPMRGPGRREIGHG----NLAERALKPVLPARDSFPYSIRLVS 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A + G +A+ D ++ + + +G AI + D Sbjct: 435 DILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIAI---------LSD 485 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T++G I VQ + + + L A++ +++ K Sbjct: 486 ILGLEDHLGDMDFKVTGTENG-ITAVQMDIKITGITVELMREALQKAREGRLYIMEKMKM 544 Query: 237 VISN 240 + + Sbjct: 545 ALPS 548 Score = 96.7 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 81/228 (35%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 + L K A+GS +V T ++ TA + V + G +P Sbjct: 15 VRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQERAYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+ R R+I R LR + Q+I I G + Sbjct: 74 --GGFFKRE---GKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGISDVM 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ + AL+ VAA+ G + G IV+ E +D Sbjct: 129 AVVASSAALY-------------VSDIPFLNPVAAVKVGCVDGTFIVNPTLDEQERSTLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T I+ V+G + S++ F + ++LA I LI+ Q+ Sbjct: 176 LVVAGTRDA-IMMVEG--QGNEISEETFLSAIDLAHKSILPLIEAQEK 220 >gi|148240244|ref|YP_001225631.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH 7803] gi|187611326|sp|A5GN19|PNP_SYNPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|147848783|emb|CAK24334.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 7803] Length = 721 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 34/237 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REI LT + A GS +++ GDT +L TA + E + + G +P Sbjct: 13 REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123 G+ ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 73 ---GSFMRRE---GRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPAD- 125 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 ++TGA +A G +AA+ G+L +++ Y E Sbjct: 126 ---VLSVTGASMATLLAGI-------------PFYGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G IV V+ A + + ++ + + +LIK Q+ ++ + Sbjct: 170 RGDLDLVVAGTPEG-IVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQESILKD 223 Score = 97.5 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 31/248 (12%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR +Q+R IS V K GS L + G T +L+TATL P + + Sbjct: 323 RVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATL--GTPSDAQEMDDLNPS 380 Query: 61 AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 E Y P S G + R+ G + RA+ V+ + + Sbjct: 381 TEKTYLHHYNFPPYSVGETKPMRSPGRREIGHG----ALAERAILPVLPAKDTFPYVVRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGDE 483 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D TD G I +Q + + +N A+ + Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLAMGTIAEAINQARPARLHI 542 Query: 231 IKLQKDVI 238 ++ + I Sbjct: 543 LEKMMEAI 550 >gi|88807542|ref|ZP_01123054.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 7805] gi|88788756|gb|EAR19911.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 7805] Length = 721 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 34/237 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REI LT + A GS +++ GDT +L TA + E + + G +P Sbjct: 13 REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123 G+ ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 73 ---GSFMRRE---GRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPAD- 125 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 ++TGA +A G +AA+ G+L +++ Y E Sbjct: 126 ---VLSVTGASMATLLAGI-------------PFYGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G IV V+ A + + ++ + + +LIK Q+ ++ + Sbjct: 170 RGDLDLVVAGTPEG-IVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQESILKD 223 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 31/248 (12%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR +++R IS V K GS L + G T +L+TATL P + Sbjct: 323 RVDGRTLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATL--GTPSDAQEMDDLNPN 380 Query: 61 AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 E Y P S G + R+ G + RA+ V+ + + Sbjct: 381 TEKTYLHHYNFPPYSVGETKPMRSPGRREIGHG----ALAERAIIPVLPAKDTFPYVVRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGDE 483 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D TD G I +Q + + + +N A+ + Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLAMNTIAEAINKARPARLHI 542 Query: 231 IKLQKDVI 238 ++ + I Sbjct: 543 LEKMMEAI 550 >gi|309358906|emb|CAP33602.2| hypothetical protein CBG_15142 [Caenorhabditis briggsae AF16] Length = 802 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 87/239 (36%), Gaps = 18/239 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52 +R GR+ R I + + K G + + G T +++T T + V + Sbjct: 335 IRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPTAAFHPDSVAQLLG 394 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 + + Y +T + + S R + +AL+ + + Sbjct: 395 SQRKKSFMLHYEFPSFATNDIGV--SASRSLNRREIGHGALAEKALKPLFPTGF--PYAV 450 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + C V++++G + A++ G +AL+D M++ + + G ++ Sbjct: 451 RLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAI-----GLISDEKEPETNYK 505 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T +G Q + ++ L+ A+ I ++ Sbjct: 506 VLTDILGIEDYAGDMDFKIAGTKNG-FTAAQLDVKNDGLTRQQLRESLDAARAGIDHVL 563 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 32/228 (14%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-ITAEYGMLPRSTG---- 71 T ++++A + + GD ++ T + +G + EY + G Sbjct: 42 TGHMARFASAAVVASSGDNSVMATVV----QRKQKQGDGNGVPLQVEYRPSASAVGRIPT 97 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 N ++RE Q I R I R++R ++ ++ Q+I + + I Sbjct: 98 NFLRRELS---QSDNEILISRAIDRSIRPLMPANSY-ETQVICKPLALDENADQIMLGIN 153 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI--VDLDYGEDSTIDVDA 189 A ALH S G +AAI M I V+ E ++ Sbjct: 154 AASSALH-------------ISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNM 200 Query: 190 NFVMTDSGHIVEVQGSAERATFSQ-DHFFAMLNLAKDRIADLIKLQKD 236 M + V ++ E ++ + L++A + L + Sbjct: 201 IVAMRRNQKTVMIELDGEE---TRGEQLEEALDVAFQNVERLHVAMDE 245 >gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-29] gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3] gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3] gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-29] Length = 712 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|220903340|ref|YP_002478652.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|257096688|sp|B8J1X9|PNP_DESDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219867639|gb|ACL47974.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 743 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I + + A GS L + G+T L ATL ++ G +T Sbjct: 324 RIDGRDTTTVRPIQIQTGLLPRAHGSALFRRGETKSLVVATLGSSTDEQRMDSLTGDVTK 383 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G E R R + ++LR V+ A + + + Sbjct: 384 RFMLHYNFPPFSVG-----EVKPVRVSRREIGHGALAEKSLRPVLPADADFPFTLRVVAE 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 ++++G + AA+ G ++L D + VA ++ G++ G Sbjct: 439 TMESNGSSSMAAVCGGSLSLMDAGV-------------PVSAPVAGVAMGLIKEGEKFIV 485 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED+ D+D T G + VQ + + + + A++ +++ Sbjct: 486 LTDILGDEDALGDMDFKIAGTAEG-VTGVQMDIKITGLTTEIMRTAMQQAREGRLHILEE 544 Query: 234 QKDVISNE 241 I++ Sbjct: 545 MAKAIASP 552 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 81/229 (35%), Gaps = 27/229 (11%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68 EI + A G ++ G T +L T LE + ++ G +P Sbjct: 19 EIIIESGRMANQAHGEVWIQCGGTVVLVTVCSQPLEFDKGFFPLTVEYSEKMYAAGRIP- 77 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R + R+I R +R + Q++ + + Sbjct: 78 --GSFFRREI--GRPSERETLVARLIDRPIRPLFPKGLNEDVQVLASVISADQENESDVL 133 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+TGA AL +G VA + G +++ + + D Sbjct: 134 ALTGASAAL-------------MLSPLPFEGPVAGGRIARVGGQFVLNPTF--EQQAQSD 178 Query: 189 ANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 N V SG + V+G A S+D L + +I L+++Q Sbjct: 179 LNIVFAASGDALTMVEGDAR--FISEDVIIEALEWGRLQILPLVEIQHK 225 >gi|158523039|ref|YP_001530909.1| polynucleotide phosphorylase/polyadenylase [Desulfococcus oleovorans Hxd3] gi|226702647|sp|A8ZZ59|PNP_DESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|158511865|gb|ABW68832.1| Polyribonucleotide nucleotidyltransferase [Desulfococcus oleovorans Hxd3] Length = 721 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 86/242 (35%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 R+ GR +++R IS V GS L G+T +L TL + Sbjct: 314 RIDGRAFDEVRPISCEVGVLPRTHGSALFTRGETQVLGVMTLGSGHDEQRVETLFGDETR 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + S R G + R + V+ I + + Sbjct: 374 PFMLHYNFPPFCVGEVKRVMGPSRRDIGHG----NLAHRGISYVLPDKETFDYTIRLVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++++G + + +AL D ++ + + V G A+ + D+ Sbjct: 430 VLESNGSSSMGTVCSCILALMDGGVPIKAPVSGIAMGLVADGDKVAV---------LSDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + + S++ L+ AKD ++ + Sbjct: 481 LGDEDHFGDMDFKVTGTEKG-ITALQMDIKIKSLSREILEKALHQAKDGRIHILGKMLEA 539 Query: 238 IS 239 +S Sbjct: 540 LS 541 Score = 82.1 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 26/230 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 ++ ++K A G+ LV++G+T +L T +E + ++ G +P Sbjct: 14 PFTIKTGRLAKQAAGAALVQYGETIVLVTVAAATEPKEDADFLPLSVEYQEKIYSAGRIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 GN +RE GR + R+ R +R + Q+I + + Sbjct: 74 ---GNYFRREI--GRPSEKETLTCRLTDRPIRPLFPAGYTFETQVITTVLSMDRENDPDV 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I GA AL G +AA+ G L G + + E D+ Sbjct: 129 LSIVGASAAL-------------TISDLPFDGPLAAVRVGRLNGTLVANPTNTELDDCDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + SG +V V+G + S+ + + + LI +Q + Sbjct: 176 NIVVAGSRSG-VVMVEGGS--NVVSEAEMLEAIFFGHNALLPLIDIQDQM 222 >gi|329122064|ref|ZP_08250672.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus DSM 19965] gi|327466871|gb|EGF12387.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus DSM 19965] Length = 697 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55 +R GR +++R I+ + GS L G T LT TL I + + Sbjct: 311 IRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLAPMNETQIIDDLTLVNE 370 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I +Y G R+ G + RAL V+ I + Sbjct: 371 KRYIH-QYNFPSYCVGETKSSRGPGRREIGHG----ALAERALEPVIPSVDEFPYAIRVV 425 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++++++G + A++ G+ ++L + + VA I+ G++ Sbjct: 426 SEILESNGSSSQASVCGSTMSLMNAGV-------------PIHAPVAGIAMGLVNEGEHF 472 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + S++ A L A Sbjct: 473 TILTDIQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIHGLSREILMAALKQAHKG 526 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 27/234 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + K A GS LV++GDT +L T E + + G + Sbjct: 12 RPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLTVDYEEKMYSVGKM 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR G + R+I R +R + D ++ + D Sbjct: 72 P---GGFLRRE---GRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSVDYDNAPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + GA ++ G VA + G + G +V+ + Sbjct: 126 LCGLLGASASIA-------------ISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERST 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ +++ I+ V+G A+ A S++ + A I L++ QK +I Sbjct: 173 MNITVAGSETA-ILMVEGGAKEA--SEEEVLDAIMYAHTVIKQLVEFQKKIIEK 223 >gi|300121002|emb|CBK21384.2| unnamed protein product [Blastocystis hominis] Length = 204 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 67/214 (31%), Gaps = 25/214 (11%) Query: 32 FGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88 G+T +L + ++A M P R Sbjct: 1 MGNTKVLAVVYGPRDAGSKSSHDIDNDKATVSAGVTMAPYCGTERRVVHMN----SRICT 56 Query: 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 E + I R V+ + I I C + QADGG + A +A+ D + D Sbjct: 57 EYAQAIRRCFEHVILTTLYPHSTISIHCTIFQADGGELPCCLNAALLAIIDAGIDILDFQ 116 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAE 207 +++ G + + D++Y E + + S + Sbjct: 117 -------------VSLNVGYMDNTILFDMNYVESHLNGILLTVAYLPKSDQFTL---TTL 160 Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKD-VISN 240 + + F +L+ AK+ + + KD V+ N Sbjct: 161 NSNIPLELFEDVLDAAKEGCKQVYAILKDHVLEN 194 >gi|260425775|ref|ZP_05779755.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45] gi|260423715|gb|EEX16965.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45] Length = 716 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 94/248 (37%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R I V GS L G+T L TL I + HG + Sbjct: 318 RIDGRALDQVRPIVSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLVLEDGGEYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AK ++ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKQALAQAKAGRLHILA 539 Query: 233 LQKDVISN 240 ++ Sbjct: 540 EMAKALTE 547 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + +++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGFKHE--VLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182 A+ A AL G +A G G +++ + Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAGARVGFEDGEYVLNPTVDDMQGLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + + V+ + V + S E ++D + A ++I +I L Sbjct: 175 NNPEQRLDLVVAGTKDAVMMVES-EAYELTEDEMLGAVTFAHEQIQPVIDL 224 >gi|297623850|ref|YP_003705284.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix DSM 17093] gi|297165030|gb|ADI14741.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix DSM 17093] Length = 726 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRNTK---H 56 +R GR +R I + V GS + G+T +L T K I + Sbjct: 321 LRADGRAPEDIRPIWIEVGVLPKTHGSAVFTRGETQVLGVTTLGTGKDDRLIDDLGLETS 380 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + VS R+ G + RAL ++ + + Sbjct: 381 ETFMLHYNFPPFSTGEVKRLRGVSRRELGHG----NLARRALERMMPSQDTFGYVVRVVA 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 + ++++G + A++ A +++ D ++ + + +G I + D Sbjct: 437 ETLESNGSSSMASVCAATLSMMDAGVPLKKPVAGIAMGLIKEGDTYKI---------LSD 487 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED+ D+D T G + +Q + + + A L A+ ++ L + Sbjct: 488 ILGSEDALGDMDFKVTGTHDG-VTALQMDIKIKGITPEIMRAALEQARVGRRHILNLMDE 546 Query: 237 VIS 239 V+S Sbjct: 547 VLS 549 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 31/238 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 RE+ + +K GS V++GDT +L TA + + +T +T EY + Sbjct: 16 RELIIETGKYAKLVAGSVTVRYGDTVVLVTAHMSDTA----ADTDFLPLTVEYEERHYAI 71 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + +RE GR G ++ R+ R +R + Q+II + Sbjct: 72 GKIPGSFQRRE---GRPGTQATLNARITDRQIRPLFPKGLRNEVQVIITVLSADRENDPA 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A GA AL + G A +S G + G ++ + Sbjct: 129 MIAAIGASAALS-------------ISNIPWDGPTACVSVGYVDGQYVLYPSLQTLADSQ 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK---DRIADLIKLQKDVISNE 241 ++ ++ ++ V+ SA+ +D + A+ + +LIK + I E Sbjct: 176 LELTVAASEDA-VLMVEASADE--LPEDTMVGAITFAQREMQGVIELIKRMRAEIGQE 230 >gi|193690697|ref|XP_001944927.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Acyrthosiphon pisum] Length = 762 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 86/247 (34%), Gaps = 16/247 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR+ + +R IS + K GS L + G T + T L+ + + + Sbjct: 349 RCDGRKLDDLRNISCEVDLYKPLHGSALFQRGQTQVFCTVALDSIDSALKLDPMTILTSG 408 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 Y P +T + + R+ G + R LRS+V + I Sbjct: 409 INEKNFFLHYEFPPYATNDIGRMGPSMRREIGHG----ALAERGLRSIVPENF--PFTIR 462 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+I G +AL D + + + + S + Sbjct: 463 LTSEVLESNGSSSMASICGGSLALMDAGVPISQPAAGVAIGLITNYDDND-SKHIKDYRI 521 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + A +I + Sbjct: 522 LTDILGIEDYLGDMDFKLAGTKKG-ITALQADIKIPGLPLKIVMEAVEAATSAKHKIINI 580 Query: 234 QKDVISN 240 I + Sbjct: 581 MNATIQS 587 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 79/232 (34%), Gaps = 31/232 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 I L+ ++ ++G + GDT ++ ++ +T +Y + G Sbjct: 45 IKLSGGKYARLSDGCAVATLGDTSVMA----TTVSKSTKSSSNFLPLTVDYRQKAAAAG- 99 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128 R+ + EI R+I R+LR + + QI+ C+++ DG Sbjct: 100 RIPTNYLRRELSVSEHEILTSRLIDRSLRPLFPSTYCFDTQIM--CNLLAVDGINHPDIL 157 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 +I A AL G V A+ G+ + + E S +++ Sbjct: 158 SINAASTALA-------------LSDIPWNGPVGAVRVGLCDNNLVTNPTRRELSNSELN 204 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKD 236 V ++ ++GSA Q + ++ LQK+ Sbjct: 205 LVVVSAAKNLVIMLEGSANNVL--QQDVLKAIKFGVKECQHIVNCIDNLQKE 254 >gi|254456606|ref|ZP_05070035.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter sp. HTCC7211] gi|207083608|gb|EDZ61034.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter sp. HTCC7211] Length = 690 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 27/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR + +R I V GS L G+T + ATL +E+ + + Sbjct: 313 RIDGRGLSDVRPIECEVGVLPRTHGSALFTRGETQAIVVATLGTSDDEQRIESLDGLQRE 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R R+ G ++ RA+ S + I + Sbjct: 373 RFMLHYNFPPFSVGE-TGRIGTGRREIGHG----KLAWRAINSSLPSKEAFPYTFRIVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G +AL D +K VA I+ G++ Sbjct: 428 ITESNGSSSMATVCGTSLALMDAGV-------------PIKEPVAGIAMGLIKEGDDFSV 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + + L+ AKD ++ Sbjct: 475 LSDILGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFEIMEQALSQAKDGRVHILGE 533 Query: 234 QKDVIS 239 +S Sbjct: 534 MNKALS 539 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 83/234 (35%), Gaps = 28/234 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 +ISL V++ A+G+ + G+T +L T +KV + + + G +P Sbjct: 15 KISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLSVNYQEKYYAGGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA R I R+I R +R + + Q++ + Sbjct: 75 ---GGYFKREA---RPTESETLISRLIDRPIRPLFPDAFKNEVQLLPTVISYDKENQPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AIT + AL G V A G + G I++ E + Sbjct: 129 LAITASSAALA-------------ISGMPFMGPVGASRVGFVDGKYILNPSKAELENSSL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D T ++ +E +++ + + +I++ ++ ++ E Sbjct: 176 DLVVAGTKDAVLMV---ESEANGLTEEEMLNAVKFGHEGFVPVIEMVEE-LAKE 225 >gi|239636247|ref|ZP_04677249.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri L37603] gi|239597602|gb|EEQ80097.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri L37603] Length = 598 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + + Sbjct: 217 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 276 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ ++ + I Sbjct: 277 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTSDFPYTVRIVS 332 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 333 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 379 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + +++ L A+ Sbjct: 380 ILTDIQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQG 432 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%) Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 + QI+ D AA+ G+ +AL G Sbjct: 1 MFPKGYKHDVQIMNIVLSADPDCSPEMAAMIGSSMALS-------------VSDIPFLGP 47 Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAM 219 +A ++ G + G +++ E +D D+ ++VE A + ++ Sbjct: 48 IAGVNVGYVDGKYVINPTVAEKEVSRLDLEVAGHKDAVNMVE----AGASEITESEMLEA 103 Query: 220 LNLAKDRIADLIKLQK 235 + D I L+ Q+ Sbjct: 104 IFFGHDEIKRLVAFQQ 119 >gi|260432181|ref|ZP_05786152.1| polyribonucleotide nucleotidyltransferase [Silicibacter lacuscaerulensis ITI-1157] gi|260416009|gb|EEX09268.1| polyribonucleotide nucleotidyltransferase [Silicibacter lacuscaerulensis ITI-1157] Length = 716 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + GS L G+T L TL + HG + Sbjct: 318 RIDGRSTTDVRPIVAETGLLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGPPGRREVGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGDYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRLHILN 539 Query: 233 LQKDVISN 240 +S Sbjct: 540 EMSKALSE 547 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 80/234 (34%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEQKPGQDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPIRPLFVDGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL +G +A G G +++ D D Sbjct: 128 IVAMIAASAALTISGA-------------PFRGPIAGCRVGYTNGEYVLNPTV--DDMQD 172 Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + N V ++ V+ +E S+ +N A +I +I L Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVNFAHQQIQPVIDL 224 >gi|219684925|ref|ZP_03539866.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia garinii PBr] gi|219671663|gb|EED28719.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia garinii PBr] Length = 721 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++ L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILS 535 Query: 233 LQKDVISN 240 + VIS+ Sbjct: 536 VMDTVISD 543 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 32/240 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGEFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E D+D V I V+G A S+D + ++ A + I + QK + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKKFLE 222 >gi|111115640|ref|YP_710258.1| polynucleotide phosphorylase/polyadenylase [Borrelia afzelii PKo] gi|123145624|sp|Q0SM46|PNP_BORAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110890914|gb|ABH02082.1| polyribonucleotide nucleotidyltransferase [Borrelia afzelii PKo] Length = 722 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R+I + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S++ I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMIPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I Q + ++ L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIENVTKQLMRDALEQARVGRIHILS 535 Query: 233 LQKDVISN 240 + VISN Sbjct: 536 IMNSVISN 543 Score = 91.7 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 32/239 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E D+D V I V+G A S+D + ++ A + I + QK+ + Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDSAHEYIKQICNAQKEFL 221 >gi|253701574|ref|YP_003022763.1| polynucleotide phosphorylase/polyadenylase [Geobacter sp. M21] gi|259534126|sp|C6E2P5|PNP_GEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|251776424|gb|ACT19005.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. M21] Length = 696 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R IS + A GS L G+T + ATL V ++ +G Sbjct: 312 RIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R A R+ G + RAL+ V+ I I D Sbjct: 372 KFMLHYNFPPYSVGETSFRLAPGRREIGHGM----LAERALQQVLPKHDDFPYTIRIVSD 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G +++ D +K VA I+ G++ Sbjct: 428 ITESNGSSSMATVCGGSLSMMDAGI-------------PIKAPVAGIAMGLIKEGDDFAI 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ A L AK Sbjct: 475 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMSAALAQAKAG 526 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 32/236 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPRST 70 I++ ++K A G+ ++K GDT +L TA V M G+ +T Y + Sbjct: 14 ITIETGKIAKQASGAVMIKSGDTMVLVTA-----VAMKSAKEGQGFFPLTVNYQEKAYAG 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + KRE GR R+I R +R + L Q++ D Sbjct: 69 GRIPGSFFKRE---GRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKDNDPA 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ GA AL G +A + G + G I + E D Sbjct: 126 ILSMIGASAAL-------------MVSDCPFAGPIAGVKVGRVNGAFIANPTAEELEKSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 ++ + I+ V+GSA A S++ + + ++ Q + ++ +V Sbjct: 173 LEIVIAASQEA-ILMVEGSA--AEVSENDLLEAIFFGHAAVQPILAAQLE-LAKKV 224 >gi|254671820|emb|CBA03945.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha275] Length = 579 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|224047480|ref|XP_002196971.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Taeniopygia guttata] Length = 936 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWI-----RN 53 R GR +R+I + + GS L + G T +L T +LE V + Sbjct: 511 RCDGRDLTSLRDIKCEVNMFRMLHGSALFQRGQTQVLCTVTFDSLESSVKSDLISTAVSG 570 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + RAL+ V+ I Sbjct: 571 IKDKNFMLHYEFPPYATNEIGKVTGMNRRELGHG----ALAERALKPVIPQDF--PFTIR 624 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + + V K + G + Y Sbjct: 625 VTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTK---CSQGKGDIEDYR 681 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A +++ Sbjct: 682 LLTDILGIEDYYGDMDFKMAGTNKG-ITALQVDLKLPGIPIKIVVEAIQQATAAKREILH 740 Query: 233 LQKDVISNE 241 + ++ Sbjct: 741 IMNQTLAKP 749 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 31/205 (15%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTT-ATLEEKVPMWIRNTKHGWITAEYGMLPRS 69 R++ L+ K+A+GS +V+ GDT ++ T + + P + +Y + Sbjct: 207 RKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQFMP-----LVVDYRQKAAA 261 Query: 70 TGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G R+ + G +EI R+I R++R + QI+ C+++ DG Sbjct: 262 AG-RIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNDP 318 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA AL G + A+ G++ G +++ E Sbjct: 319 DILAINGASAALA-------------LSDIPWNGPIGAVRVGLVDGETVINPTRKE--MS 363 Query: 186 DVDANFVMTDSGH--IVEVQGSAER 208 N V+ + H +V ++ +AE Sbjct: 364 SSALNLVVAGALHSQVVMLEATAEN 388 >gi|26991392|ref|NP_746817.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida KT2440] gi|81439660|sp|Q88DW0|PNP_PSEPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|24986460|gb|AAN70281.1|AE016668_7 polyribonucleotide nucleotidyltransferase [Pseudomonas putida KT2440] Length = 701 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L A + +++ V Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541 Query: 238 ISN 240 I Sbjct: 542 IGQ 544 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 ++L +++ A G+ LV + T +L T ++ + + + T G + Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + + Q++ Sbjct: 74 P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 AA+ G AL +G + A +++ Y + + Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I+ K+ Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222 >gi|114566439|ref|YP_753593.1| polynucleotide phosphorylase/polyadenylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318489|sp|Q0AYI2|PNP_SYNWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114337374|gb|ABI68222.1| Polyribonucleotide nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 703 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 99/249 (39%), Gaps = 28/249 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTKH 56 R+ GR+ +++R++S GS L G T +L+ + E+++ K Sbjct: 313 RVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGAISEEQRLDGLGIEEKK 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +I Y P STG R+ G + RAL +V+ I + Sbjct: 373 RYIH-HYNFPPYSTGETKPMRGPGRREIGHG----ALAERALLAVIPSEEEFPYTIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172 +V++++G + ++ G+ ++L +K V+ I+ G++ G Sbjct: 428 EVLESNGSSSMGSVCGSTLSLMHAGV-------------PIKAPVSGIAMGLVKEGERFA 474 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T+ G + +Q + +++ A L A++ ++K Sbjct: 475 IMSDIQGIEDALGDMDFKLAGTEKG-VTALQMDIKITGVNREIVEAALKQAREGRMFILK 533 Query: 233 LQKDVISNE 241 + I Sbjct: 534 KMLEAIDKP 542 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 27/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + V++ A G+ L+++GDT +L TAT E + + + G + Sbjct: 13 RPLIVEIGQVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFPLTVDYEEKQYAVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + ++ ++ D Sbjct: 73 P---GGFIKRE---GRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEKDNAPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AITGA VAL G VAA+ G++ G I++ + D Sbjct: 127 VTAITGASVALS-------------ISDIPFAGPVAAVIVGLVDGELIINPTVEQHQKSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T I+ V+G A ++ + A + I ++ Q+++I Sbjct: 174 LHLAVAGTKEA-IMMVEGGANEVP--EETMRDAIFFAHEEIKKIVDFQENIIRE 224 >gi|70726640|ref|YP_253554.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus haemolyticus JCSC1435] gi|117940134|sp|Q4L5X7|PNP_STAHJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|68447364|dbj|BAE04948.1| polyribonucleotide nucleotidyltransferase [Staphylococcus haemolyticus JCSC1435] Length = 700 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 89/234 (38%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEQE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ + + I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTTEFPYTVRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + +++ L A+ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQG 533 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TA + + G +P Sbjct: 15 RSLTIEIGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGKYVINPTVEEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D D+ ++VE A + ++ + D I L+ Q++V++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEKEMLEAIFFGHDEIKRLVAFQEEVVA 224 >gi|152988444|ref|YP_001350781.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa PA7] gi|187611271|sp|A6VCJ6|PNP_PSEA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|150963602|gb|ABR85627.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa PA7] Length = 701 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R + + V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGERKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R GR R R+ R + +++ I + + Sbjct: 376 AFMLHYNFPPFSVGE-CGRMGSPGR---REIGHGRLARRGVAAMLPTQDEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D +K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGV-------------PVKAPVAGIAMGLVKEGEKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD G + +Q + +++ L A + +++ Sbjct: 479 LTDILGDEDHLGDMDFKVAGTDKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQ 537 Query: 234 QKDVISNE 241 VI+ Sbjct: 538 MNQVIARP 545 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 28/229 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ LV D +L T + E + + + T G +P Sbjct: 15 VTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQEKTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + + Q++ A Sbjct: 74 --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTNKKSDPDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187 A+ G AL G + A G I++ Y + + + Sbjct: 129 AMIGTSAALAISGI-------------PFAGPIGAARVGFHPEIGYILNPTYEQLQSSSL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D T+ ++ +E ++D + A D +I+ K+ Sbjct: 176 DMVVAGTEDAVLMV---ESEADELTEDQMLGAVLFAHDEFQAVIRAVKE 221 >gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621] gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621] Length = 717 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVLPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|8928246|sp|O87792|PNP_PSEPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|3650364|emb|CAA77048.1| polyribonucleotide nucleotidyltransferase [Pseudomonas putida] Length = 701 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L A + +++ V Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541 Query: 238 ISN 240 I Sbjct: 542 IGQ 544 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 ++L +++ A G+ LV + T +L T ++ + + + T G + Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + + Q++ Sbjct: 74 P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 AA+ G AL +G + A +++ Y + + Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I+ K+ Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222 >gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102] gi|254782705|sp|C1EP29|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102] Length = 712 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGTTVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|254295410|ref|YP_003061433.1| polynucleotide phosphorylase/polyadenylase [Hirschia baltica ATCC 49814] gi|254043941|gb|ACT60736.1| Polyribonucleotide nucleotidyltransferase [Hirschia baltica ATCC 49814] Length = 709 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 91/246 (36%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR +Q+R I + GS L G+T + ATL + T Sbjct: 316 VRIDGRALDQVRPILGEVSILPRTHGSALFTRGETQAICVATLGTGEDEQFIDGLEGTSK 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G ++ RAL++V+ + + + Sbjct: 376 SNFMLHYNFPPYSVGEVGRMGGAGRREIGHG----KLAWRALKAVLPSNEDFPYTLRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A + G+ +A+ D + V+ I+ G++ Sbjct: 432 EITESNGSSSMATVCGSSLAMMDAGV-------------PITRPVSGIAMGLIKDEDGIA 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + A +++ L AK A ++ Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTTEG-LTSLQMDIKIAGITKEIMQTALEQAKGGRAHILD 537 Query: 233 LQKDVI 238 + Sbjct: 538 EMNKAL 543 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T + + + G + Sbjct: 14 RPLTLETGRIARQADGAVLATYGETSVLATVVAAKKANPDLDFFPLTVNYQEKYYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KREA R + R+I R +R + Q+++ + Sbjct: 74 P---GGFFKREA---RPTEKETLTSRLIDRPIRPLFVPGFKNETQVVLTVLSYDMENDP- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D + + + G + A G G I++ D D Sbjct: 127 ------------DVVAMVAASAALTVSGVPFMGPIGAARVGYKDGEYIINPTL--DQMAD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + V+ + V + S E S++ + + +I Sbjct: 173 TQLDLVVAGTQDAVMMVES-EAKELSEEVMLGAVMAGHESFQTVID 217 >gi|121602640|ref|YP_989507.1| polynucleotide phosphorylase/polyadenylase [Bartonella bacilliformis KC583] gi|187470938|sp|A1UU54|PNP_BARBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120614817|gb|ABM45418.1| polyribonucleotide nucleotidyltransferase [Bartonella bacilliformis KC583] Length = 733 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR + +R I + GS L G+T L ATL + G Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLGTSEDEQYVDLLTGVCKE 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R + GR R ++ RA+ ++ I + + Sbjct: 377 TFLLHYNFPPFSVGE-TGRLSSPGR---REIGHGKLAWRAIHPMLPTKEAFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G +AL D + VA I+ G++ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAR-------------PVAGIAMGLIKEGERFVI 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + ++D L AKD ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTKNG-ITSLQMDIKIDGITEDIMKIALEQAKDGRNHILNE 538 Query: 234 QKDVISN 240 +++ Sbjct: 539 MAKALTD 545 Score = 92.1 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +++ V++ A+G+ + +G+T +L T + + + T G + Sbjct: 14 RPLTIETGRVARQADGAVVATYGETVVLATVVSAKAPKPDQDFFPLTVNYQEKTYAVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE+ R I R+I R +R + Q+I+ VIQ D Sbjct: 74 P---GGYFKRES---RPSENETLISRLIDRPIRPLFVDDYKNDTQVIVS--VIQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G +A G G+ +++ E Sbjct: 126 PDILSMIAASAALTLSGI-------------PFMGPIAGARVGYCNGHYVLNPTLDEMPE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T++ ++ +E S++ + + +I Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAHELSEEVMLGAITFGQKGFQPVIDA 218 >gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Ames] gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Sterne] gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Bacillus anthracis str. A2012] gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0389] gi|229603609|ref|YP_002868046.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0248] gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Australia 94] gi|81583685|sp|Q81WM8|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782703|sp|C3P5L0|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. Ames] gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. Sterne] gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0389] gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0248] Length = 712 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 712 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 897 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 90/240 (37%), Gaps = 33/240 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56 R GR ++R I+ + A GS L G+T L TL + ++ + + Sbjct: 447 RSDGRSACELRPINSQCGILPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVDTEES 506 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A + R+ G + RAL ++ I ++ Sbjct: 507 KSFYLQYTFPPSSVGEVGRTGAPNRREIGHGM----LAERALEPILPPEVDFPYTIRVES 562 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 563 TITESNGSSSMASVCGGCLALQDAGV-------------PIKFPVAGIAMGLVLDTHEFG 609 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D + G I Q + + L A+D Sbjct: 610 GDGTPLILSDITGSEDASGDMDFKVAGNEHG-ISAFQMDIKVVGITLPVMEQALLQARDG 668 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 31/229 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R I + + A GS +V G+T + + T + + + + Sbjct: 98 RHILVETGHIGRQASGSVMVTDGETIVYCSVCMADTPSDPSDFFPMSVHYQE---RLSAA 154 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124 R++G KRE GR + R+I R LR + QI+ V DG Sbjct: 155 GRTSGGFFKRE---GRAKDHEVLVCRLIDRPLRPTMPKGFYYETQIL--SWVFSYDGLHS 209 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+T A +A+ K +A + GM+ +V+ + Sbjct: 210 PDCVAVTAAGIAMA-------------LSEVPNKQTIAGVRIGMINDQFVVNPTTEQMED 256 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++D TDS I+ ++G +++ + + I ++ K Sbjct: 257 SELDLMMAGTDSA-ILMIEG--FCNFLTEEKLLQAVETGQAAIREICKA 302 >gi|260063685|ref|YP_003196765.1| polynucleotide phosphorylase/polyadenylase [Robiginitalea biformata HTCC2501] gi|88783130|gb|EAR14303.1| putative polyribonucleotide nucleotidyltransferase [Robiginitalea biformata HTCC2501] Length = 750 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 79/231 (34%), Gaps = 20/231 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR+ +++R I GS + G+T L T TL E + Sbjct: 317 IRLDGRKTDEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLGTSREANIIDMPSFEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL V + + Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREIGHG----NLAQRALSRQVPED--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 +V++++G + A + +AL D + + + IS Y ++ Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVKLRKPVSGIAMG--------LISDPESGKYAVLS 482 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 D+ ED D+D T G I Q + S + L A+D Sbjct: 483 DILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILIKALKQARDG 532 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 81/231 (35%), Gaps = 21/231 (9%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 REIS+ K A GS +V+ G+ LL T K ++ R Sbjct: 16 REISIETGKLAKQAHGSVVVRSGNCMLLCTVVSNYKASDLDFLPLTVDYREKFHASGRYP 75 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KREA R + R++ R LR + + Q++I D Sbjct: 76 GGFFKREA---RPSTGEILVMRLVDRVLRPLFPKNYHCETQVMIQLMSHDDD-------- 124 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 + D + + + + ++ + G + G I++ + + D+D Sbjct: 125 -----VMPDAMAGLAASAAIQLSDFPFECPISEVRVGRVDGEFIINPTRTQLESSDIDM- 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 V ++ V+G E S++ + A + + I Q ++++ Sbjct: 179 IVGASEDSVMMVEG--EMDEISEEDMTEAIKFAHEAVKVQIAAQNR-LADK 226 >gi|58698478|ref|ZP_00373385.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535017|gb|EAL59109.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Drosophila ananassae] Length = 677 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56 +R+ GR+ +++R+I + + GS L G+T L TA T +E++ I + Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y + G + + G R ++ +A+ V+ + I + Sbjct: 370 EHFMLHYNFPSFAVGE----TSAARAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +++++DG + A + G +AL D +K VA I+ G++ Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGV-------------PIKAPVAGIAMGLIKDKDEYV 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + + S + L AK +++ Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-VTALQMDMKISGISFEIVEKSLEQAKAGRLHILE 531 Query: 233 LQKDVISNE 241 VIS Sbjct: 532 KMNAVISEH 540 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 31/232 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R +SL +++ A GS +V +GDT +L T EE V N + I Y M Sbjct: 14 RTLSLETGKIARQAHGSVVVNYGDTSVLVTVVSKKKEENVDFLPLNVQF--IAKSYAMGK 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G KRE G+ R I R+I R++R + I + C+++ D Sbjct: 72 IP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTVNPP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184 A+ GA AL +A + G I++ E Sbjct: 126 EVPALIGAVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKA 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D F+ D I+ V+ +E S+++ F + + + +IKL K+ Sbjct: 173 SSLDL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221 >gi|124266592|ref|YP_001020596.1| polynucleotide phosphorylase/polyadenylase [Methylibium petroleiphilum PM1] gi|187610284|sp|A2SFM2|PNP_METPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|124259367|gb|ABM94361.1| putative polyribonucleotide nucleotidyltransferase protein [Methylibium petroleiphilum PM1] Length = 751 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + V GS L G+T L TL + + Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVITTLGTERDTQRIDALAGEFED 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 377 RFMFHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKKDEFAYAIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +++ D LK HVA I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGV-------------PLKAHVAGIAMGLIKDGNRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ L AK+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTTG-VTALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538 Query: 234 QKDVISN 240 + + Sbjct: 539 MVEALGG 545 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 24/169 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ + G+ +V T +L T + + + T G +P Sbjct: 18 VTLETGEIARQSGGAVIVDMDGTVVLATVVAAKNPKPGQDFFPLTVDYIEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ KRE GR R+I R LR + Q+++ + + A Sbjct: 77 --GSFFKRE---GRPSELETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSLNPEASADIA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 A+ G+ AL G + A G + G +++ Sbjct: 132 ALIGSSAALAISGI-------------PFNGPIGAARVGYINGEYVLNP 167 >gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241] gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus E33L] gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis str. Al Hakam] gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0488] gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0442] gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0193] gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0465] gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0174] gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis Tsiankovskii-I] gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NVH0597-99] gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108] gi|227813285|ref|YP_002813294.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. CDC 684] gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-42] gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201] gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 4342] gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC 6E1] gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. CNEVA-9066] gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Western North America USA6153] gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Kruger B] gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. Vollum] gi|81395117|sp|Q6HF08|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81686592|sp|Q636L9|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187470934|sp|A0RHH8|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782704|sp|C3L7C0|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241] gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L] gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis str. Al Hakam] gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0488] gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0193] gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0442] gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0465] gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. A0174] gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis Tsiankovskii-I] gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108] gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NVH0597-99] gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. CDC 684] gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC 6E1] gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 4342] gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201] gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock3-42] gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 712 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|295427761|ref|ZP_06820393.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128119|gb|EFG57753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 638 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G T L+ A + ++ + + Sbjct: 258 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 317 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ +A I I Sbjct: 318 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 373 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 374 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 420 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + +++ L A+ +++ Sbjct: 421 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 479 Query: 233 LQKDVISNE 241 I Sbjct: 480 HMLQTIDQP 488 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 21/169 (12%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR G + R+I R +R + QI+ D + AA+ Sbjct: 15 GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAAM 71 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 G+ +AL +G +A ++ G + G I++ E +D Sbjct: 72 IGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLE 118 Query: 191 FVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D+ ++VE A + ++ + + I L+ Q+ ++ Sbjct: 119 VAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 163 >gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str. A1055] Length = 712 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + + I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHEEIKRLIAFQEEIV 223 >gi|218904934|ref|YP_002452768.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820] gi|226702597|sp|B7JJ84|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820] Length = 712 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|297693867|ref|XP_002824217.1| PREDICTED: exosome complex exonuclease RRP43-like [Pongo abelii] Length = 276 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 89/257 (34%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNVGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDTGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115 + P + SG G +Q + I + ++ L + + + Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI++ Sbjct: 256 VTRHKEVKKLMDEVINS 272 >gi|222475095|ref|YP_002563511.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str. Florida] gi|257096679|sp|B9KIE3|PNP_ANAMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222419232|gb|ACM49255.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str. Florida] Length = 805 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATL---EEKVPMWIRNTKHG 57 R+ GR +Q+R I + + + GS L GDT L TA +E+V + Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y + G A G R ++ RA+ V+ A I + + Sbjct: 380 RFLLHYNFPSYAVGE----AAALRPPGRREIGHGKLAWRAIHPVLPTKADFPYTIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ++DG + A + GA +AL D ++ + + +G A+ + D+ Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAV---------LSDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + D L AKD +I V Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545 Query: 238 ISN 240 I Sbjct: 546 IKE 548 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 25/191 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R + + +++ A+G+ +V +G T +L+T +E V + + G +P Sbjct: 14 RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE G+ R I R++ R++R + I+I C+++ D Sbjct: 74 ---GGFFKRE---GKPSDRETLISRLVDRSIRPLFPTGFCDE--IVIVCNLLSYD----- 120 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--IVDLDYGEDSTI 185 V+ + + + + +A G + I++ E + Sbjct: 121 ------QVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARS 174 Query: 186 DVDANFVMTDS 196 ++D + T S Sbjct: 175 ELDMFYSGTKS 185 >gi|298368480|ref|ZP_06979798.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon 014 str. F0314] gi|298282483|gb|EFI23970.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon 014 str. F0314] Length = 705 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L + A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AKD +++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|126304424|ref|XP_001382164.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 785 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 18/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R+IS + + GS L + G T +L T T + + + I Sbjct: 358 RCDGRDLTSLRDISCEVDMFRTLHGSALFQRGQTQVLCTVTFDSLESSLKSDPITTAISG 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + ++L V+ I Sbjct: 418 IKEKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKSLYPVIPKDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + + K G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLIAKNSSNKE--GEIEDYR 529 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 530 LLTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPIKIVMEAIQQATAAKREILQ 588 Query: 233 LQKDVISNE 241 + IS Sbjct: 589 IMNKTISKP 597 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 88/229 (38%), Gaps = 26/229 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++++A+G +V+ G+T ++ TA T + A G +P Sbjct: 54 RKLEISSGRLARFADGCAVVQSGETAVMVTAVSKTKPSPSQFMPLVVDYKQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 N ++RE S + R+I R++R + Q++ + + + Sbjct: 114 ---TNHLRREFGS---SDKEILTSRIIDRSIRPLFPSGYFYDTQVLCNLLAVDSVNEPDV 167 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA AL G + A+ G++ G IV+ E S + Sbjct: 168 LAINGASAALS-------------LSDIPWNGPIGAVRIGIIDGEYIVNPTRKEMSYSTL 214 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQK 235 + + IV ++ +AE Q F + + +I+ +QK Sbjct: 215 NLVVAGAPNSQIVMLEAAAENVL--QQDFCHAIKVGMKHNQQIIQGIQK 261 >gi|296085901|emb|CBI31225.3| unnamed protein product [Vitis vinifera] Length = 942 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 17/238 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56 R GR + +R I+ + A GS L G+T L TL + ++ + + Sbjct: 437 RSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDVDEL 496 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G + RAL ++ I ++ Sbjct: 497 KRFYLQYSFPPSCVGEVGRMGAPSRREIGHGM----LAERALEPILPSEDDFPYTIRVES 552 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 + +++G + A++ G +AL D ++ + VL G P++ Sbjct: 553 TITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTE-----EFGGDGTPLIL 607 Query: 176 -DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D+ ED++ D+D T+ G I Q + + L AKD ++ Sbjct: 608 SDITGSEDASGDMDFKVAGTEDG-ITAFQMDIKVGGITLPIMKQALLQAKDGRKQILA 664 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68 R I + + A GS V G+T + T+ L + VP + + + + R Sbjct: 87 RHILVETGHIGRQASGSVTVTDGETIVYTSVCLAD-VPSEPSDFFPLSVNYQERFSAAGR 145 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 ++G KRE GR I R+I R LR + QI+ V+ DG Sbjct: 146 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMLKGFYHETQIL--SWVLSYDGLHSPD 200 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + A+T A +A+ + VA + GM+ I++ E + Sbjct: 201 SLAVTAAGIAVA-------------LSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSE 247 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 +D TDS I+ ++G ++ + + +D + + + ++ + Sbjct: 248 LDLLVAGTDSA-ILMIEG--YCNFLPEEKLLQAVEVGQDAVRAICNEV-EALAKK 298 >gi|163754268|ref|ZP_02161391.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1] gi|161326482|gb|EDP97808.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1] Length = 746 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR+ +++R I GS + G+T L T TL E Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ +V + + Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREVGHG----NLAQRALKGMVPED--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +AL D ++ + + G ++ G + D Sbjct: 431 EVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAM-----GLISDADSGKYA--VLSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + L A+D +++ D Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTD 542 Query: 237 VIS 239 I+ Sbjct: 543 TIA 545 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 29/237 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REIS+ K A GS +V+ G LL T + V + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSDVDFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I ++ D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMI--QLMSHD----- 122 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D + + + + ++ G + G I++ + D+ Sbjct: 123 ------PEVMPDAMAGLAASAAIQLSDFPFECAISEARVGRINGEFIINPTRAQLEESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241 D + + ++ V+G E S++ + A + I Q + I + Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMTEAIKFAHEAIKVQCAAQLRLAEAIGKK 230 >gi|296412418|ref|XP_002835921.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629718|emb|CAZ80078.1| unnamed protein product [Tuber melanosporum] Length = 278 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 16/214 (7%) Query: 29 LVKFGDTHLLTTATLE-EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRS 87 V+ G+T ++ + E RN++ +T + S +R KR G+ R Sbjct: 70 YVEHGNTKVICSVNGPIEPRAASARNSERATVTVDVCFAAFSGTDRKKR----GKSDKRV 125 Query: 88 QEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC 147 E+Q + R + + + ++ I ++ DG + A +AL D M D Sbjct: 126 LEMQSALSRTFATTLLTTLHPRSEVHISLHILSQDGSILATCVNAATLALVDAGVPMSDY 185 Query: 148 SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207 V VA+ + G P++D+ E+ + + S I +Q Sbjct: 186 --------VTACTVASYTNPDESGEPLLDMSSAEEMDLPGITLATVGRSDKISLLQL--- 234 Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 + ML + D + +L VI Sbjct: 235 ETKVRLERLEGMLAVGIDGCGKIRQLLDGVIREH 268 >gi|262039265|ref|ZP_06012583.1| polyribonucleotide nucleotidyltransferase [Leptotrichia goodfellowii F0264] gi|261746759|gb|EEY34280.1| polyribonucleotide nucleotidyltransferase [Leptotrichia goodfellowii F0264] Length = 711 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR ++R + + GS L G+T L T TL K I + Sbjct: 321 RADGRTTTEIRPLDVEVDTLPVPHGSALFTRGETQALVTVTLGSKADEQIVDGIEDESRK 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G A R+ G + RAL+ V+ + + + Sbjct: 381 KFFLHYNFPPYSVGEAGFLRAPGRRELGHG----NLAERALKYVMPDQETFPYTVRLVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL +K VA I+ G++ Sbjct: 437 ITESNGSSSQASICGGSLALMAAGV-------------PIKSTVAGIAMGLIKEGDTFTV 483 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A + +I Sbjct: 484 LTDIQGLEDHLGDMDFKVAGTKKG-ITAIQMDIKIEGITREIMDIALKQALEGRYFIIDK 542 Query: 234 QKDVISNE 241 ++VIS Sbjct: 543 MEEVISEP 550 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 31/235 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 ++ L+ +++ A GS +V+ G T LL TAT ++E + + G P Sbjct: 15 QVKLSTGKIARQAGGSVMVQCGGTVLLVTATRSKDVKEGQDFFPLTVDYIEKFYASGKFP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G VKRE+ R I R++ R +R + L + I V+ D Sbjct: 75 ---GGFVKRES---RPSTDEILISRLVDRPIRPLFPEGFL--NSVHIVITVVSYDEINQP 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A G VAL G VA ++ G + G +++ + Sbjct: 127 ENLATIGVSVAL-------------GLSDIPFAGTVAGVTVGYVDGEYVLNPTAEQLEKS 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ + T + V+ A+ S++ + +RI ++ Q +S Sbjct: 174 EIHLSVAGTKDA-VTMVEAGAKE--VSEEVMLEAIMFGHERIKEICAEQDKFLSQ 225 >gi|110833194|ref|YP_692053.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax borkumensis SK2] gi|123050749|sp|Q0VSR7|PNP_ALCBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110646305|emb|CAL15781.1| polyribonucleotide nucleotidyltransferase [Alcanivorax borkumensis SK2] Length = 697 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R I GS L G+T + TATL + + Sbjct: 316 RIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGMRDAQFIDALEGSHQD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y P G + R+ G R+ R + +VV I + + Sbjct: 376 HFMLQYNFPPYCVGETGFIGSPKRREIGHG----RLARRGVEAVVPSVQDFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +AL D L VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSMALMDAGV-------------PLTAPVAGIAMGLVKEEDGRYA 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ LN A ++ Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTARG-VTALQMDIKIEGITEEIMEKALNQANAGRLHILG 537 Query: 233 LQKDVISN 240 I+ Sbjct: 538 EMNKAIAE 545 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L +++ A + +V+ GDT +L T ++ +T Y +TG Sbjct: 16 VTLETGQIARQATAAVMVRIGDTQVLVTVVGRKEANP---GQNFFPLTVNYQEKTYATGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 +KRE GR + R+I R +R + + Q++ + A Sbjct: 73 IPGGFLKRE---GRPSEKETLTCRLIDRPIRPLFPKGFMNEVQVVATVMSSDKNRDPDIA 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G G I++ Y E + +D Sbjct: 130 ALIGTSAALSISGI-------------PFSGPIGAARVGYKDGMYILNPSYSELAESALD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+ ++ +E S+D + + LI+ K+ Sbjct: 177 LVVAGTEPAVLMV---ESEAQELSEDQMLGAVLFGHMEMQPLIQGIKE 221 >gi|323489596|ref|ZP_08094823.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis MPA1U2] gi|323396727|gb|EGA89546.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis MPA1U2] Length = 705 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 84/245 (34%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTT--ATLEEKVPMWIRNTKH 56 +R GR +++R +S + GS L G T + T A + ++ + Sbjct: 313 IRPDGRGPSEIRPLSSEVGILNRTHGSGLFTRGQTQAMSICTLGALGDVQIIDGLGIEDT 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL +V+ I + Sbjct: 373 KRFMHHYNFPLFSVGE----TGFLRGPGRREIGHGALGERALEAVIPNEKDFPYTIRLVA 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G T A+I + +A+ D + + V KG + + D Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGVPLTAPVAGIAMGLVKKGDNYTV---------LSD 479 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + S++ L A+ +++ Sbjct: 480 IQGMEDHLGDMDFKVAGTAKG-ITALQMDIKIDGLSREILEEALTQAQIGRIHILESMLA 538 Query: 237 VISNE 241 I+ Sbjct: 539 TIAEP 543 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 27/235 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 RE+ + ++K A G+ L+++GDT +L+TAT + + + + G +P Sbjct: 15 RELQVEVGQLAKQANGAALIRYGDTAVLSTATASKTPKPLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I + D + Sbjct: 75 ---GGFIKRE---GRPSEKATLTSRLIDRPIRPLFPDGFRNEVQVISMVMSVDQDCPSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G++ G I++ + + Sbjct: 129 AAMFGSSLAL-------------MISDIPFGGPIAGVIVGLIDGQYIINPTNDQLEQSSI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 + T I V+ A+ S++ + + I LI Q + I+ EV Sbjct: 176 NLIVAGTKDA-INMVEAGAKE--VSEEVILEAIMFGHEEIKKLIAFQ-EQIAEEV 226 >gi|83595114|ref|YP_428866.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum ATCC 11170] gi|123766875|sp|Q2RMR6|PNP_RHORT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83578028|gb|ABC24579.1| 3' exoribonuclease [Rhodospirillum rubrum ATCC 11170] Length = 708 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I + + A GS L G+T L T TL I + G Sbjct: 314 LRIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGTGQDEQIIDALEGEYR 373 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+ ++ + + Sbjct: 374 ENFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAIHPMMPAKDAFPYTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A + G +AL D LK VA I+ G++ Sbjct: 430 EITESNGSSSMATVCGTSLALMDAGV-------------PLKNAVAGIAMGLIKEDERFA 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I +Q + + +++ LN AKD ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGTANG-ITSLQMDIKITSITKEIMNVALNQAKDGRIHILG 535 Query: 233 LQKDVISN 240 + N Sbjct: 536 EMTKALGN 543 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 30/228 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R++ L +++ A+G+ + GDT +L TA + K + + T G +P Sbjct: 16 RKLVLETGRIARQADGAVMASLGDTTVLCTAVGAKTKSKFDFFPLTVNYQEKTFAAGKIP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G KRE GR + + R+I R +R + Q++ C V+ D Sbjct: 76 ---GGFFKRE---GRPSEKETLVSRLIDRPIRPLFVHGYKNETQLV--CTVLCHDLENNP 127 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA AL G + A G++ G +++ + + Sbjct: 128 DIVAIVGASAALTLSGL-------------PFLGPIGAARVGLIDGAFVLNPTRDQMADS 174 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T G ++ +E S+ + + +I Sbjct: 175 VLDLVVAGTREGVLMV---ESEAHELSEQQMLDAVMFGHEGYQPVIDA 219 >gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis CI] gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar anthracis str. CI] Length = 712 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536 Query: 233 LQKDVISNE 241 VI+ Sbjct: 537 HMLSVIAEP 545 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L+TAT + V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|124483602|emb|CAM32674.1| Polyribonucleotide nucleotidyltransferase [Herbaspirillum seropedicae] Length = 712 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 20/242 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V GS L G+T L ATL + + G Sbjct: 320 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDGQVIDAVAGEYKE 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ L A I + Sbjct: 380 NFLFHYNFPPFSVGECGRMMGPKRREIGHG----RLAKRGVLAVMPSLEAFP-YTIRLVS 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A++ G+ +AL D M+ + + +G+ A+ + D Sbjct: 435 EITESNGSSSMASVCGSSLALMDAGVPMKAHVAGIAMGLIKEGNKFAV---------LTD 485 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T +G I +Q + +++ L AK+ ++ ++ Sbjct: 486 ILGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALEQAKEGRHHILGKMQE 544 Query: 237 VI 238 + Sbjct: 545 AV 546 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 +++L +++ A G+ +V DT +L T ++ + + T G +P Sbjct: 15 QVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYIEKTYAAGRIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE G+ + R+I R +R + L Q+II + + Sbjct: 75 ---GGFFKRE---GKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G V A G + G +++ + + + Sbjct: 129 PAMIGASAALSLAGI-------------PFNGPVGAARVGYIDGQYVLNPTTSQLKSSQL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T++ ++ +E S++ + D+ +I+ ++ + Sbjct: 176 DLVVAGTETAVLMV---ESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRD 225 >gi|313149393|ref|ZP_07811586.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis 3_1_12] gi|313138160|gb|EFR55520.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis 3_1_12] Length = 711 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 92/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 382 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLAHGKE 441 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ ++ + + D Sbjct: 442 RFLLHYNFPPFSTGEAKAQRGVGRREIGHG----NLAHRALKKMIPED--YPYVVRVVSD 495 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 496 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 542 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + LN AK+ ++ Sbjct: 543 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 601 Query: 232 KLQKDVISNE 241 ++ I+ Sbjct: 602 GKIQETIAEP 611 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHGWITAEYGML 66 R I+L K A+GS +++ G+T LL T ++ VP ++ A +G Sbjct: 78 RTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAAFGRF 137 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R++ RALR + + + ++ + ADG Sbjct: 138 P---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFSADG--- 186 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 V + D L + + G ++ + + G +++ + + D Sbjct: 187 --------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKAD 238 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T +I+ V+G E + S+ + +A + I K Q + Sbjct: 239 MDIMVAATYE-NIMMVEG--EMSEVSEAELLEAMKVAHEAIKVHCKAQME 285 >gi|15614970|ref|NP_243273.1| polynucleotide phosphorylase/polyadenylase [Bacillus halodurans C-125] gi|81786500|sp|Q9KA83|PNP_BACHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|10175027|dbj|BAB06126.1| polynucleotide phosphorylase [Bacillus halodurans C-125] Length = 704 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L T A + ++ + + Sbjct: 313 IRPDGREIDEIRPLSSQVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEES 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ I + Sbjct: 373 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEPVIPSEQDFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKQDEHVS 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + + + L A+ ++ Sbjct: 476 VLTDIQGMEDALGDMDFKVAGTRKG-VTALQMDIKISGIDRAILEQALEQARKGRMIILD 534 Query: 233 LQKDVISN 240 + IS Sbjct: 535 NMLEAISE 542 Score = 95.2 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 26/229 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K +P + + G +P Sbjct: 15 RKLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGFRNEVQVISIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ + D+ Sbjct: 129 AAMVGSSLALS-------------ISDIPFEGPIAGVTVGRIDGQFVINPTQDQLEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T I V+ AE +D + + I LI+ Q+ Sbjct: 176 HLVVAGTKDA-INMVEAGAEEVP--EDVMLEAIMFGHNEIKRLIEFQEK 221 >gi|219685671|ref|ZP_03540485.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia garinii Far04] gi|219672787|gb|EED29812.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) [Borrelia garinii Far04] Length = 721 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 91/248 (36%), Gaps = 27/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR N++R++ + GS L G+T L +++E++ I K Sbjct: 315 IRTDGRTPNEIRDVIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL S+V I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + ++ L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILS 535 Query: 233 LQKDVISN 240 + VIS+ Sbjct: 536 VMDTVISD 543 Score = 91.3 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 32/240 (13%) Query: 5 GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59 GR +++ K A GS L +G + +L T + E + + ++ Sbjct: 10 GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 G +P G +KRE G+ + + R+I R +R + D Q+I Sbjct: 65 YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + A+ A+ F G +AA+ L G IV+ + Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGEFIVNPSF 165 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E D+D V I V+G A S+D + ++ A + I + QK+ + Sbjct: 166 EEIHNSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFLE 222 >gi|329943105|ref|ZP_08291879.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10] gi|332287687|ref|YP_004422588.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci 6BC] gi|313848261|emb|CBY17262.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci RD1] gi|325507208|gb|ADZ18846.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci 6BC] gi|328814652|gb|EGF84642.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10] gi|328914940|gb|AEB55773.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci 6BC] Length = 694 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKH 56 +R GR +R IS+ GSCL G+T + TL E + + Sbjct: 313 IRSDGRSITTIRPISIETSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEGL 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL + I I+ Sbjct: 373 AKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHTLPDPVKFPYTIRIES 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 + +++G + A++ G +AL D +K +A I+ G++ Sbjct: 429 SITESNGSSSMASVCGGCLALMDAGV-------------PIKTPIAGIAMGLILDDDHVT 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D G I Q + + A L AKD D+++ Sbjct: 476 ILSDISGLEDHLGDMDFKVAGNTEG-ITAFQMDIKVEGITPAIMRAALAQAKDGRQDILE 534 Query: 233 LQKDVIS 239 K ++ Sbjct: 535 TMKQALA 541 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 30/227 (13%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ L + +T + + A LEE V + ++ + ++ G Sbjct: 18 FETGKIARQANGAVLARMQETWVFSSVCAANLEEAVDFLPLRVDYQE---KFSSIGKTLG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR R R+I R++R + + QI+ DG T A Sbjct: 75 GFIKRE---GRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVW--SYDGVTLPDPIA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I G AL VA + G + +V+ E ++ Sbjct: 130 ICGVSAALA-------------ISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMEL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T++ I+ ++G F+++ + I + K KD Sbjct: 177 VLAGTENA-ILMIEG--HCDFFTEEQVIEAIEFGHKHIVTICKALKD 220 >gi|261364736|ref|ZP_05977619.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC 25996] gi|288567035|gb|EFC88595.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC 25996] Length = 706 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L + A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AKD +++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 27/217 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASTALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 T ++ +E S+D + D Sbjct: 177 LVVAGTSKAVLMV---ESEAKILSEDVMLGAVVYGHD 210 >gi|255066227|ref|ZP_05318082.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC 29256] gi|255049437|gb|EET44901.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC 29256] Length = 706 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L + A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AKD +++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|314933453|ref|ZP_07840818.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae C87] gi|313653603|gb|EFS17360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae C87] Length = 699 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RALR ++ +A I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTADFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A+I G+ +AL D ++ + V + I + D Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED+ D+D T G I +Q + +++ L A+ ++ Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQ 543 Query: 237 VIS 239 I Sbjct: 544 TIG 546 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ +D Sbjct: 75 ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADSDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGNYVINPSVAEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+++I Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223 >gi|294784020|ref|ZP_06749342.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 1_1_41FAA] gi|294479832|gb|EFG27611.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 1_1_41FAA] Length = 703 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKADEQLIDDLEKEYYK 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RALR V+ I + + Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPSEEEFPYTIRVVSE 443 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 444 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 490 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A + ++++ Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILEV 549 Query: 234 QKDVISNE 241 + IS Sbjct: 550 MNNTISKP 557 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 33/231 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +S+ + G+ ++++GDT +L+TA + + + G Sbjct: 18 RTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLTVDYVEKFYSTGKF 77 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + I R+I R +R + + + I V+ D Sbjct: 78 P---GGFNKRE---GRPSTNATLIARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEVNT 129 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 I G+ +AL G VA ++ G G I++ E Sbjct: 130 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPAELEE 176 Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ++D + T ++VE A ++ + A D I + + Q Sbjct: 177 SELDLSVAGTKDAVNMVE----AGAKELDEETMLKAIMFAHDNIKKICEFQ 223 >gi|223044246|ref|ZP_03614283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis SK14] gi|222442396|gb|EEE48504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis SK14] Length = 699 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 18/230 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + A GS L G T L+ A + ++ + Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RALR ++ +A I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTADFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A+I G+ +AL D ++ + V + I + D Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED+ D+D T G I +Q + +++ L A+ Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQG 533 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGNYVINPSVNEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+++I Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223 >gi|225439207|ref|XP_002270169.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 946 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 17/238 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56 R GR + +R I+ + A GS L G+T L TL + ++ + + Sbjct: 437 RSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDVDEL 496 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G + RAL ++ I ++ Sbjct: 497 KRFYLQYSFPPSCVGEVGRMGAPSRREIGHGM----LAERALEPILPSEDDFPYTIRVES 552 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 + +++G + A++ G +AL D ++ + VL G P++ Sbjct: 553 TITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTE-----EFGGDGTPLIL 607 Query: 176 -DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D+ ED++ D+D T+ G I Q + + L AKD ++ Sbjct: 608 SDITGSEDASGDMDFKVAGTEDG-ITAFQMDIKVGGITLPIMKQALLQAKDGRKQILA 664 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 28/235 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPR 68 R I + + A GS V G+T + T+ L + VP + + R Sbjct: 87 RHILVETGHIGRQASGSVTVTDGETIVYTSVCLAD-VPSEPSDFFPLSVNYQERFSAAGR 145 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 ++G KRE GR I R+I R LR + QI+ V+ DG Sbjct: 146 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMLKGFYHETQIL--SWVLSYDGLHSPD 200 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + A+T A +A+ + VA + GM+ I++ E + Sbjct: 201 SLAVTAAGIAVA-------------LSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSE 247 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 +D TDS I+ ++G ++ + + +D + + + ++ + Sbjct: 248 LDLLVAGTDSA-ILMIEG--YCNFLPEEKLLQAVEVGQDAVRAICNEV-EALAKK 298 >gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group] Length = 778 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 33/245 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56 R GR ++R I+ + A GS L G+T L TL + ++ + + Sbjct: 324 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A + R+ G + RAL ++ I ++ Sbjct: 384 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 440 TITESNGSSSMASVCGGCLALQDAGV-------------PIKFPVAGIAMGLVLDTLEFG 486 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D ++G I Q + + L A+D Sbjct: 487 GDGKPLILSDITGAEDASGDMDFKVAGNENG-ISAFQMDIKVVGITLPIMEHALLQARDG 545 Query: 227 IADLI 231 ++ Sbjct: 546 RKHIL 550 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 7/152 (4%) Query: 84 GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCL 141 G + + R+I R LR + QI+ V DG + AIT A VA+ C Sbjct: 33 DGETVLVCRLIDRPLRPTMPKGFYYETQIL--SWVFSYDGIHSPDSLAITAAGVAICSCS 90 Query: 142 QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201 + + K +A + GM+ +V+ + ++D TDS I+ Sbjct: 91 YLPQSFLCRALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAGTDSA-ILM 149 Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++G +++ + + I ++ K Sbjct: 150 IEG--YCDFLTEEKLLQAVETGQGAIREICKA 179 >gi|115653057|ref|XP_788673.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1 [Strongylocentrotus purpuratus] gi|115929402|ref|XP_001192933.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1 [Strongylocentrotus purpuratus] Length = 981 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 89/246 (36%), Gaps = 15/246 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTK 55 R GR+ ++MR+I+ + + K GS L + G T + T T + P+W + + Sbjct: 538 RCDGREADEMRDITCSVDLYKPLHGSALFQRGQTQVFCTVTFDSIESALRADPVWQEDIR 597 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P +T + ++ R+ G + + LR VV I + Sbjct: 598 EKNFMLHYEFPPYATNETGRTGGINRRELGHG----ALAEKGLRPVVPSD--YPFTIRLT 651 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V++++G + A + G +AL D + + + + I + + Sbjct: 652 SEVLESNGSSSMATVCGGSLALMDAGVPVSHPVAGVAIGVITETEPDDI-FTIKDHRIVT 710 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 DL ED D+D + G I +Q + + + + ++ + Sbjct: 711 DLLGIEDYMGDMDMKLAGSKKG-ITALQ-TDVKVPLPMKIIVEAIQAGTAAKSKILNIMA 768 Query: 236 DVISNE 241 I Sbjct: 769 SSIRKP 774 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 77/215 (35%), Gaps = 26/215 (12%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSG 81 K A+G + GDT ++ TA + +T +Y + G R+ + Sbjct: 245 KLADGCATAQIGDTTVMVTAV----SKKNSSSPGFLPLTVDYRQKAAAAG-RIPTNHLRR 299 Query: 82 RQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVAL 137 +G QEI RMI R++R + Q + C+++ DG +I GA AL Sbjct: 300 ERGVTDQEILTSRMIDRSIRPLFPKGFFYDTQ--VMCNLLAVDGLQDPGVISINGASAAL 357 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G + A+ G++ +++ + ++ T Sbjct: 358 A-------------LSDVPWNGPIGAVRVGLIDEEVMINPTRLDMRRSTINMVVAGTKKS 404 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++V V+ SA+ Q F L +++ Sbjct: 405 NLVMVEASADNVL--QTDFLKALKAGLKETQIIVR 437 >gi|254796456|ref|YP_003081292.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii str. Illinois] gi|254589702|gb|ACT69064.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii str. Illinois] Length = 638 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR ++R IS+ GS L G T L ATL +E+V I + Sbjct: 199 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 258 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 + Y LP + G A R+ G R+ +A+++V+ + + + Sbjct: 259 ESVLLHYNFLPYAVGEVGALRAPGRREIGHG----RLALKAVKAVLPGKEVFPYTLRLVS 314 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ ++DG + A + G+ +AL D + + + G +AI + D Sbjct: 315 EITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDGARSAI---------LSD 365 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T +G IV +Q + S LN A +++ + Sbjct: 366 ISGDEDMLGDMDFKVAGTRNG-IVALQMDMKVRGISIATIRNALNQALAGRLHILEKMEH 424 Query: 237 VISNE 241 I+ Sbjct: 425 AIAKP 429 >gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group] Length = 865 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 33/245 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56 R GR ++R I+ + A GS L G+T L TL + ++ + + Sbjct: 411 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 470 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A + R+ G + RAL ++ I ++ Sbjct: 471 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 526 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 527 TITESNGSSSMASVCGGCLALQDAGV-------------PIKFPVAGIAMGLVLDTLEFG 573 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D ++G I Q + + L A+D Sbjct: 574 GDGKPLILSDITGAEDASGDMDFKVAGNENG-ISAFQMDIKVVGITLPIMEHALLQARDG 632 Query: 227 IADLI 231 ++ Sbjct: 633 RKHIL 637 Score = 69.4 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 7/152 (4%) Query: 84 GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCL 141 G + + R+I R LR + QI+ V DG + AIT A VA+ C Sbjct: 120 DGETVLVCRLIDRPLRPTMPKGFYYETQIL--SWVFSYDGIHSPDSLAITAAGVAICSCS 177 Query: 142 QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201 + + K +A + GM+ +V+ + ++D TDS I+ Sbjct: 178 YLPQSFLCRALSEVPNKQTIAGVRIGMINDQFVVNPTTEQMDDSELDLVMAGTDSA-ILM 236 Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++G +++ + + I ++ K Sbjct: 237 IEG--YCDFLTEEKLLQAVETGQGAIREICKA 266 >gi|229592632|ref|YP_002874751.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens SBW25] gi|259534147|sp|C3K255|PNP_PSEFS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|229364498|emb|CAY52345.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens SBW25] Length = 701 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++ +++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSISAMLPAADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G AI + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGQKFAI---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G + +Q + +++ L A + Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 20/167 (11%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + + Q++ AA+ Sbjct: 75 GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAM 131 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDA 189 G AL G + A +++ Y + +D Sbjct: 132 IGTSAALAISGI-------------PFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDM 178 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T ++ +E ++D + A D +I K+ Sbjct: 179 VVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAVKE 222 >gi|302381329|ref|YP_003817152.1| polyribonucleotide nucleotidyltransferase [Brevundimonas subvibrioides ATCC 15264] gi|302191957|gb|ADK99528.1| polyribonucleotide nucleotidyltransferase [Brevundimonas subvibrioides ATCC 15264] Length = 764 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 89/241 (36%), Gaps = 17/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +++R+I + GS L G+T + ATL ++ G Sbjct: 333 RVDGRALDKVRDIVSEVGIFPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLAGTYKE 392 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+R ++ S I I + Sbjct: 393 KFLLHYNFPPYSVGETGRMGGAGRREIGHG----KLAWRAIRPMLPTSEEFPYTIRIVSE 448 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D ++ + + +L+ + D+ Sbjct: 449 ITESNGSSSMASVCGASLALMDAGVPLKKPVSGIAMGLILEPSGEFA--------ILSDI 500 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ + A ++ Sbjct: 501 LGDEDHLGDMDFKVAGTRDG-ITSLQMDIKVAGITEEIMKKAIAQASAGRLHILDEMDKA 559 Query: 238 I 238 I Sbjct: 560 I 560 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R ++L +++ A+G+ L +G+T +L T + +T Y + Sbjct: 30 RPLTLETGRIARQADGAVLATYGETIVLATVVYGRAPKPGL---DFFPLTVNYQEKTFAA 86 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 G KRE GR + + R+I R +R + Q++I V+Q D Sbjct: 87 GKIPGGYFKRE---GRPTEKETLVSRLIDRPIRPLFVKGFKNETQVVIT--VLQHDLEND 141 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 + AL G + A G + G +++ + Sbjct: 142 PDIVGMVATSAAL-------------TLSGVPFMGPIGAARVGYIDGEFVLNPTLDQMPD 188 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T + +E S+ L A + +I Sbjct: 189 SQLDLVVAGTSD---ALMMVESEAKELSEQVMLDALMFAHRGMQPVIDA 234 >gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group] gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group] gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group] Length = 902 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 33/245 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56 R GR ++R I+ + A GS L G+T L TL + ++ + + Sbjct: 448 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 507 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + A + R+ G + RAL ++ I ++ Sbjct: 508 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 563 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 564 TITESNGSSSMASVCGGCLALQDAGV-------------PIKFPVAGIAMGLVLDTLEFG 610 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D ++G I Q + + L A+D Sbjct: 611 GDGKPLILSDITGAEDASGDMDFKVAGNENG-ISAFQMDIKVVGITLPIMEHALLQARDG 669 Query: 227 IADLI 231 ++ Sbjct: 670 RKHIL 674 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 31/229 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R I + + A S +V G+T + ++ T + + + + Sbjct: 99 RHILVETGHIGRQASASVMVTDGETIVYSSVCLADTPNDPSDFFPMSVHYQE---RLSAA 155 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124 R++G KRE GR + R+I R LR + QI+ V DG Sbjct: 156 GRTSGGFFKRE---GRAKDHEVLVCRLIDRPLRPTMPKGFYYETQIL--SWVFSYDGIHS 210 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 + AIT A VA+ K +A + GM+ +V+ + Sbjct: 211 PDSLAITAAGVAMA-------------LSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDD 257 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++D TDS I+ ++G +++ + + I ++ K Sbjct: 258 SELDLVMAGTDSA-ILMIEG--YCDFLTEEKLLQAVETGQGAIREICKA 303 >gi|255003073|ref|ZP_05278037.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. Puerto Rico] Length = 805 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATL---EEKVPMWIRNTKHG 57 R+ GR +Q+R I + + + GS L GDT L TA +E+V + Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y + G A G R ++ RA+ V+ A I + + Sbjct: 380 RFLLHYNFPSYAVGE----AAALRPPGRREIGHGKLAWRAIHPVLPTKADFPYTIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ++DG + A + GA +AL D ++ + + +G A+ + D+ Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAV---------LSDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + D L AKD +I V Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545 Query: 238 ISN 240 I Sbjct: 546 IKE 548 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 25/191 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R + + +++ A+G+ +V +G T +L+T +E V + + G +P Sbjct: 14 RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE G+ R I R++ R++R + I+ C+++ D Sbjct: 74 ---GGFFKRE---GKPSDRETLISRLVDRSIRPLFPTGFCDESVIV--CNLLSYD----- 120 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--IVDLDYGEDSTI 185 V+ + + + + +A G + I++ E + Sbjct: 121 ------QVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARS 174 Query: 186 DVDANFVMTDS 196 ++D + T S Sbjct: 175 ELDMFYSGTKS 185 >gi|126698917|ref|YP_001087814.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile 630] gi|254974863|ref|ZP_05271335.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-66c26] gi|255092250|ref|ZP_05321728.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile CIP 107932] gi|255100339|ref|ZP_05329316.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-63q42] gi|255306276|ref|ZP_05350447.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile ATCC 43255] gi|255313990|ref|ZP_05355573.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-76w55] gi|255516670|ref|ZP_05384346.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-97b34] gi|255649769|ref|ZP_05396671.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-37x79] gi|260682926|ref|YP_003214211.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile CD196] gi|260686524|ref|YP_003217657.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile R20291] gi|306519874|ref|ZP_07406221.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-32g58] gi|123363602|sp|Q18BI4|PNP_CLOD6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115250354|emb|CAJ68176.1| Polyribonucleotide nucleotidyltransferase [Clostridium difficile] gi|260209089|emb|CBA62243.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile CD196] gi|260212540|emb|CBE03500.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile R20291] Length = 703 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKH 56 +R R+ ++R I + A GS + G T +L ATL V + ++ Sbjct: 316 VRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVATLGALGDVQKLDGLDEEEN 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ I + Sbjct: 376 KRYMHHYNFPAYSVGEARPSRGPGRREIGHG----ALAERALLPVIPSQEEFPYAIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ ++L D ++D + + A+ + D Sbjct: 432 EVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKVAV---------LSD 482 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + ++ L AK+ ++ + Sbjct: 483 IQGMEDHLGDMDFKVAGTEYG-ITAIQMDIKIDGIDKEILQRALKQAKEGRIHILGEMRK 541 Query: 237 VISNE 241 IS Sbjct: 542 TISQP 546 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 83/226 (36%), Gaps = 27/226 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGML 66 RE+S+ + A GSC+V++ D+ ++ +A + + + + + G + Sbjct: 14 RELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLSVDYEEKLYSVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q++ + D Sbjct: 74 P---GGFLKRE---GKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDQDCTPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ +AL G ++ G++ G +V+ + + Sbjct: 128 IVAMIGSSIALS-------------ISDIPFNGPTGSVCVGLVDGAFVVNPNAEQREKSS 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T I+ V+ A+ + + A I +++ Sbjct: 175 MHLVVSGTKEA-IMMVEAGADEVP--DEVMLDAILFAHQEIKKIVE 217 >gi|255655329|ref|ZP_05400738.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile QCD-23m63] gi|296451314|ref|ZP_06893054.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile NAP08] gi|296880334|ref|ZP_06904297.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile NAP07] gi|296259920|gb|EFH06775.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile NAP08] gi|296428575|gb|EFH14459.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile NAP07] Length = 703 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKH 56 +R R+ ++R I + A GS + G T +L ATL V + ++ Sbjct: 316 VRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVATLGALGDVQKLDGLDEEEN 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ I + Sbjct: 376 KRYMHHYNFPAYSVGEARPSRGPGRREIGHG----ALAERALLPVIPSQEEFPYAIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ ++L D ++D + + A+ + D Sbjct: 432 EVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKVAV---------LSD 482 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + ++ L AK+ ++ + Sbjct: 483 IQGMEDHLGDMDFKVAGTEYG-ITAIQMDIKIDGIDKEILQRALKQAKEGRIHILGEMRK 541 Query: 237 VISNE 241 IS Sbjct: 542 TISQP 546 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 83/226 (36%), Gaps = 27/226 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGML 66 RE+S+ + A GSC+V++ D+ ++ +A + + + + + G + Sbjct: 14 RELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLSVDYEEKLYSVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q++ + D Sbjct: 74 P---GGFLKRE---GKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDQDCTPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ +AL G ++ G++ G +V+ + + Sbjct: 128 IVAMIGSSIALS-------------ISDIPFNGPTGSVCIGLVDGAFVVNPNAEQREKSS 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T I+ V+ A+ + + A I +++ Sbjct: 175 MHLVVSGTKEA-IMMVEAGADEVP--DEVMLDAILFAHQEIKKIVE 217 >gi|75763848|ref|ZP_00743497.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488666|gb|EAO52233.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 525 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T + T A + ++ + + Sbjct: 128 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQAXSICTLGALGDVQILDGLGVEES 187 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 188 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 243 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 244 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 290 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 291 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 349 Query: 233 LQKDVISNE 241 VI+ Sbjct: 350 HMLSVIAEP 358 >gi|325276169|ref|ZP_08141974.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51] gi|324098706|gb|EGB96747.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51] Length = 701 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L A + +++ V Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541 Query: 238 ISN 240 I Sbjct: 542 IGQ 544 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 ++L +++ A G+ LV + T +L T ++ + + + T G + Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + + Q++ Sbjct: 74 P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 AA+ G AL +G + A +++ Y + + Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I+ K+ Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222 >gi|148549775|ref|YP_001269877.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida F1] gi|187611272|sp|A5W983|PNP_PSEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148513833|gb|ABQ80693.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida F1] gi|313500616|gb|ADR61982.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida BIRD-1] Length = 701 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L A + +++ V Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541 Query: 238 ISN 240 I Sbjct: 542 IGQ 544 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 ++L +++ A G+ LV + T +L T ++ + + + T G + Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + + Q++ Sbjct: 74 P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 AA+ G AL +G + A +++ Y + + Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I+ K+ Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222 >gi|241761092|ref|ZP_04759181.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374711|gb|EER64172.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 748 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57 R+ GR +R I GS L G+T L + TL E++ + + Sbjct: 313 RIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQMIDGLTGLHYE 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G ++ RAL V+ A I + D Sbjct: 373 RFMLHYNFPPYSVGEVGRFGAPGRREIGHG----KLAWRALHPVLPSKADFPYTIRVLSD 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A + G +AL D L V+ I+ G++ G+ I Sbjct: 429 ITESNGSSSMATVCGGCLALMDAGV-------------PLTRPVSGIAMGLILEKDGFAI 475 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + A +++ L AK A ++ Sbjct: 476 LSDIMGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGE 534 Query: 234 QKDVISN 240 + Sbjct: 535 MSKALGE 541 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 80/226 (35%), Gaps = 27/226 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +++L V++ A+G+ + G+T +L T ++E + + + G +P Sbjct: 15 KLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQEKYSAAGRIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE + R I R+I R +R + +I V+ DG Sbjct: 75 ---GGFFKRERGA---TERETLISRLIDRPIRPLFPEGFYNETLVIA--QVMSYDGENE- 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 D L + + G + A G G I++ + D+ Sbjct: 126 ----------PDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D T ++ V+ +E ++ ++ A + + +IK Sbjct: 176 DLVVGATRDA-VMMVE--SEANELPEEVMLNAVSFAHESLQPVIKA 218 >gi|224438200|ref|ZP_03659135.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi CCUG 18818] gi|313144645|ref|ZP_07806838.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi CCUG 18818] gi|313129676|gb|EFR47293.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi CCUG 18818] Length = 704 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54 +R GR +R IS+ + +A GS L G T L +ATL + +N Sbjct: 320 IRADGRGLKDIRPISIETNILPFAHGSVLFTRGQTQALVSATLGSENDAQSYEMLGSKNA 379 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G +V R+ G + RAL S + R I + Sbjct: 380 LKRRFLFHYNFPGFSVGEASMIGSVGRRELGHG----NLARRALESSLTSQ---DRTIRL 432 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A++ G +AL C ++ + V +G AI + Sbjct: 433 VSEILESNGSSSMASVCGGSLALCACGVQVDSLIAGVAMGLVTQGEKYAI---------L 483 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D G I +Q + S++ L AK+ ++ + Sbjct: 484 TDISGLEDHDGDMDFKVAGGYKG-ISAMQMDIKLGGISKEILEESLLQAKEAREQILGIM 542 Query: 235 KDV 237 ++ Sbjct: 543 EEA 545 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 72/225 (32%), Gaps = 26/225 (11%) Query: 15 SLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST--- 70 S T K A GS L + G + LL + EE + ++ +Y ++ Sbjct: 14 SYTFNYMAKAANGSVLYQNGGSVLLASVCAEE---NNKYDDDFLPLSVQYIEKAYASNKF 70 Query: 71 -GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 VKRE G+ R+I R LR + I+I V+ DG Sbjct: 71 PPGFVKRE---GKPSEFEILTSRLIDRTLRPLFPKGYKHITSIVI--WVLSYDG------ 119 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + L + V + G G +++ + S ++D Sbjct: 120 -KSDLQLNALNAASAALYVSNLPLESLKDNAVCGVRIGRKNGAFVLNPTMEQMSESELDL 178 Query: 190 NFVMTDSGHIVEVQG---SAERAT--FSQDHFFAMLNLAKDRIAD 229 FV ++ ++ +E+ S+ L AK I Sbjct: 179 -FVSGRGDELLMIEMKSIRSEKGANELSERDMILALESAKSYIDR 222 >gi|56551445|ref|YP_162284.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis subsp. mobilis ZM4] gi|260752942|ref|YP_003225835.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81355362|sp|Q5NQ32|PNP_ZYMMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56543019|gb|AAV89173.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp. mobilis ZM4] gi|258552305|gb|ACV75251.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 748 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57 R+ GR +R I GS L G+T L + TL E++ + + Sbjct: 313 RIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQMIDGLTGLHYE 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G ++ RAL V+ A I + D Sbjct: 373 RFMLHYNFPPYSVGEVGRFGAPGRREIGHG----KLAWRALHPVLPSKADFPYTIRVLSD 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A + G +AL D L V+ I+ G++ G+ I Sbjct: 429 ITESNGSSSMATVCGGCLALMDAGV-------------PLTRPVSGIAMGLILEKDGFAI 475 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + A +++ L AK A ++ Sbjct: 476 LSDIMGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGE 534 Query: 234 QKDVISN 240 + Sbjct: 535 MSKALGE 541 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 80/226 (35%), Gaps = 27/226 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +++L V++ A+G+ + G+T +L T ++E + + + G +P Sbjct: 15 KLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQEKYSAAGRIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE + R I R+I R +R + +I V+ DG Sbjct: 75 ---GGFFKRERGA---TERETLISRLIDRPIRPLFPEGFYNETLVIA--QVMSYDGENE- 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 D L + + G + A G G I++ + D+ Sbjct: 126 ----------PDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D T ++ V+ +E ++ ++ A + + +IK Sbjct: 176 DLVVGATRDA-VMMVE--SEANELPEEVMLNAVSFAHESLQPVIKA 218 >gi|254994938|ref|ZP_05277128.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. Mississippi] gi|255004198|ref|ZP_05278999.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. Virginia] Length = 805 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATL---EEKVPMWIRNTKHG 57 R+ GR +Q+R I + + + GS L GDT L TA +E+V + Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y + G A G R ++ RA+ V+ A I + + Sbjct: 380 RFLLHYNFPSYAVGE----AAALRPPGRREIGHGKLAWRAIHPVLPTKADFPYTIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ++DG + A + GA +AL D ++ + + +G A+ + D+ Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAV---------LSDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + D L AKD +I V Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545 Query: 238 ISN 240 I Sbjct: 546 IKE 548 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 25/191 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R + + +++ A+G+ +V +G T +L+T +E V + + G +P Sbjct: 14 RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE G+ R I R++ R++R + I+I C+++ D Sbjct: 74 ---GGFFKRE---GKPSDRETLISRLVDRSIRPLFPTGFCDE--IVIVCNLLSYD----- 120 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--IVDLDYGEDSTI 185 V+ + + + + +A G + I++ E + Sbjct: 121 ------QVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARS 174 Query: 186 DVDANFVMTDS 196 ++D + T S Sbjct: 175 ELDMFYSGTKS 185 >gi|326477645|gb|EGE01655.1| exosome complex endonuclease 1/ribosomal RNA processing protein [Trichophyton equinum CBS 127.97] Length = 302 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59 +RL GR+ N++R + + + GS + G+T +L T + I Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + +R K+ G R + E+ + A + + I + Sbjct: 74 NVVVNLAGFANVDRKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVS 133 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCG---- 171 V+ +DG A + +AL D M + + A++ + G Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASSPAVTAESAQIGGINES 193 Query: 172 -YPIVDLDYGED---STIDVDANFVMTD 195 P++D+ E+ + V M D Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPD 221 >gi|148263963|ref|YP_001230669.1| polynucleotide phosphorylase/polyadenylase [Geobacter uraniireducens Rf4] gi|187610269|sp|A5GF91|PNP_GEOUR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146397463|gb|ABQ26096.1| Polyribonucleotide nucleotidyltransferase [Geobacter uraniireducens Rf4] Length = 696 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R+I+ + A GS L G+T L ATL + ++ G Sbjct: 312 RIDGRDTKTIRQITTEVSLLPRAHGSALFTRGETQSLVAATLGTSIDEQRIDSLFGESKK 371 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R R+ G + RAL V+ I I D Sbjct: 372 RFLLHYNFPPFSVGETSFRLGPGRREIGHGM----LAERALARVLPKHDDFPYTIRIVSD 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 +++++G + A++ G +++ D +K VA I+ G++ G Sbjct: 428 ILESNGSSSMASVCGGSMSMMDAGI-------------PIKAPVAGIAMGLIKEGEDFAI 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 475 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMGIALKQALEG 526 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 83/230 (36%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A G+ +V GDT +L TA T +E + + G + Sbjct: 12 RTITIETGKMAKQASGAVVVSSGDTMVLVTAVATKTAKEGQDFFPLTVNYQEKAYAGGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KREA R R+I R +R + + L QI+ D Sbjct: 72 P---GGFFKREA---RPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKDNDPG 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ GA AL +G +A + G + G I + E D Sbjct: 126 ILSMVGASAAL-------------MVSDIPFQGPIAGVKVGRVDGRFIANPTADEMEKSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ V ++ V+GSA A S++ + I L+ Q++ Sbjct: 173 IEI-VVAASKDAVIMVEGSA--AEVSEEDMLEAIFFGHAAIQPLLAAQEE 219 >gi|332242319|ref|XP_003270334.1| PREDICTED: exosome complex exonuclease RRP43-like [Nomascus leucogenys] Length = 276 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 88/257 (34%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G+I Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDKGYIVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + SG G +Q + I + ++ L G ++ Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 256 VTRHKEVKKLMDEVIKS 272 >gi|118579404|ref|YP_900654.1| polynucleotide phosphorylase/polyadenylase [Pelobacter propionicus DSM 2379] gi|187610304|sp|A1AMM6|PNP_PELPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118502114|gb|ABK98596.1| Polyribonucleotide nucleotidyltransferase [Pelobacter propionicus DSM 2379] Length = 706 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +R I+ + GS L G+T L TL ++ +G Sbjct: 311 VRIDGRDTVTIRPIATEAGLLPRTHGSALFTRGETQALVVTTLGTSSDEQRMDSLYGEYR 370 Query: 61 ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + RAL +++ I I Sbjct: 371 KRFLLHYNFPPFSVGETSFRLGPGRREIGHGM----LAERALSAILPKHDDFPYTIRIVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIV 175 + ++++G + AA+ G ++L D + VA I+ G++ G + Sbjct: 427 ETLESNGSSSMAAVCGGCMSLMDAGV-------------PISAPVAGIAMGLIKEGEKVA 473 Query: 176 ---DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D+ ED D+D + G I +Q + +++ L A++ ++ Sbjct: 474 ILSDILGDEDHLGDMDFKVAGSSDG-ITALQMDIKIGGVTREIMQKALAQAREGRLHILG 532 Query: 233 LQKDVIS 239 + + Sbjct: 533 KMAETLG 539 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++++ K A G+ +VK GDT +L TA +++ +T Y + G Sbjct: 14 VTISTGKMAKQANGAVVVKSGDTMVLVTAVAQKEA---KEGQDFFPLTVNYTEKAYAGGK 70 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +REA R R+I R +R + + L QII D R Sbjct: 71 IPGSFFRREA---RPSDPETLTCRLIDRPIRPLFPENFLNDTQIIATVVSADKDHDPRIL 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ GA AL +G +A + G + G I + E D++ Sbjct: 128 SMLGASAAL-------------EVSDIPFQGPIAGVKVGRVDGRLICNPTADELELSDME 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V I+ V+G E S+D + + +++ Q+ Sbjct: 175 I-VVAASRDAIIMVEG--EARFVSEDDMLDAIFFGHAAVQPVLEAQEK 219 >gi|292492790|ref|YP_003528229.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus Nc4] gi|291581385|gb|ADE15842.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus Nc4] Length = 711 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I++ + A GS L G+T L TL + I + Sbjct: 331 RIDGRDTKSVRPINIMTGLLPRAHGSALFTRGETQSLVATTLGTERDAQVIDAIEGERRE 390 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G A R+ G R+ R+L +VV I + + Sbjct: 391 RFMLHYNFPPYCVGETGFVGAPKRREIGHG----RLAKRSLNAVVPDEESFPYVIRVVSE 446 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A + G ++L D + VA I+ G++ Sbjct: 447 ITESNGSSSMATVCGTSLSLMDAGV-------------PITEPVAGIAMGLIKERDQFAV 493 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L+ A++ +++ Sbjct: 494 LSDILGDEDHLGDMDFKVAGTGKG-VTALQMDIKIDGITEEIMRTALSQAREGRLHILQK 552 Query: 234 QKDVIS 239 +VIS Sbjct: 553 MNEVIS 558 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 42/237 (17%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + L +++ A G+ +V +G+T +L TA V I +T Y + Sbjct: 29 RSLVLETGCIARQATGAVVVHYGETAVLVTAVG---VKEAIEGRDFFPLTVNYQERTYAA 85 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124 G KRE GR + R+I R LR + Q+I VI +DG Sbjct: 86 GKIPGGFFKRE---GRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIAT--VISSDGEND 140 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ GA AL +AA G + G +++ + Sbjct: 141 PDIPSLIGASAALALSGI-------------PFTTPIAAARVGYIDGRYVLNPTLSQMEK 187 Query: 185 IDVDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 +D T+ ++ V+ A F A++ I +L + Sbjct: 188 SALDLVVAGTEKA-VLMVESEARELPEEIMLGSVIFGHQEMQAVI----QAIRELAE 239 >gi|122920909|pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 278 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 25 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVP 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115 + P + SG G +Q + I + ++ L + + + Sbjct: 84 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 138 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 139 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 198 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 199 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 257 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 258 VTRHKEVKKLMDEVIKS 274 >gi|33240756|ref|NP_875698.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81664238|sp|Q7VAZ5|PNP_PROMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33238284|gb|AAQ00351.1| Ribonuclease PH [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 722 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 36/238 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A GS L++ GDT +L TAT + ++ +Y Sbjct: 13 REIRLTTGRYAPQAGGSVLIECGDTAVLVTATQGQG----REGADFLPLSCDYEERLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122 R G+ ++RE GR R+ I R+I R LR + Q++ C + AD Sbjct: 69 GRIPGSFMRRE---GRPPERATLISRLIDRPLRPLFPNWMRDDIQVVATCLSLDERVPAD 125 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 A+TG+ +A G +AA+ G+L +++ + E Sbjct: 126 ----ILAVTGSSMATLLAGI-------------PFYGPMAAVRVGLLGDDFVLNPSFREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ + + ++ ++ + + +LIK Q+ ++ + Sbjct: 169 ERGDLDLVVAGTPDG-VVMVEAGSNQ--LTEQDVIEAIDFGYEAVNELIKAQESILKD 223 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 29/250 (11%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TK 55 R+ GR +++REIS + K GS L + G T +L+TATL + Sbjct: 323 RVDGRALDEVREISAEAGILPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSPD 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P S G R+ G + RA+ V+ + + Sbjct: 383 KTYIH-HYNFPPYSVGETRPMRTPGRREVGHG----ALAERAIIPVLPPKESFPYVLRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 438 SEVLSSNGSTSMGSVCGSTIALLDAGV-------------PLKAPVSGAAMGLIKEGEEV 484 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T+ G I +Q + +N AK ++ Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKMTGLPIKIIGEAINQAKPARTHIL 543 Query: 232 KLQKDVISNE 241 + I Sbjct: 544 EKMVQAIDKP 553 >gi|257094905|ref|YP_003168546.1| polynucleotide phosphorylase/polyadenylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047429|gb|ACV36617.1| Polyribonucleotide nucleotidyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 706 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 20/236 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ V A GS L G+T + ATL I + G Sbjct: 315 RIDGRDTRTVRPIAIRSGVLPRAHGSSLFTRGETQAIVVATLGTGRDEQIIDALSGEYRE 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P +TG + R+ G R+ RAL +V+ S I + + Sbjct: 375 RFMLHYNFPPYATGECGRVGTPKRREVGHG----RLAKRALLAVLPAPEDFSYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D ++ + + +G+ A+ + D+ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPLKAHVAGIAMGLIKEGNRVAV---------LTDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ED D+D T++G + +Q + +++ + LA+ A L L Sbjct: 482 LGDEDHLGDMDFKVAGTEAG-VTALQMDIKIQGITKEIMQ--VALAQAGEARLHIL 534 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 28/234 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++++ +++ A G+ +V DT +L + + + + T G +P Sbjct: 15 QVTMETGEIARQAGGAVMVSIDDTVVLVSVVGNKTAKPGQDFFPLTVDYIEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R LR + Q++ + + Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPLRPLFPDGFYHEVQVVATVMSLNPEIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ GA A+ G + A G + G +V+ + + + Sbjct: 129 AALIGASAAMTISGI-------------PFDGPIGAARVGYVDGQYVVNPTATQLKSSLL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D T + ++ +E S++ + ++ +I + +++E Sbjct: 176 DLVVAGTQAAVLMV---ESEAKELSEEVMLGAVVFGHQQMQVVIDAINE-LADE 225 >gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor] gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor] Length = 877 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 33/245 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56 R GR ++R I+ + A GS L G+T L TL +++ + Sbjct: 424 RSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTEDS 483 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G + RAL ++ I ++ Sbjct: 484 KSFYLQYSFPPSCVGEVGRIGAPSRREIGHGM----LAERALEPILPPEEDFPYTIRVES 539 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 540 TITESNGSSSMASVCGGCLALQDAGV-------------PIKFPVAGIAMGLVLDTQEFG 586 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D +SG I Q + + L A+D Sbjct: 587 GDGSPLILSDITGAEDASGDMDLKIAGNESG-ISAFQMDIKVVGITLPVMEQALFQARDG 645 Query: 227 IADLI 231 ++ Sbjct: 646 RQHIL 650 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 31/229 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 REI + + A S +V G+T L + T + + + + Sbjct: 83 REILVETGHIGRQASASVMVTDGETILYCSVCLADTPNDPADFFPLSVHYQE---RLSAA 139 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124 R++G KRE G+ + R+I R LR + QI+ V DG Sbjct: 140 GRTSGGFFKRE---GKTKDHEVLVCRLIDRPLRPTMPKGFYYETQIL--SWVFSYDGIHS 194 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AIT A +A+ K +A + G++ +V+ + Sbjct: 195 PDCLAITAAGIAVA-------------LSEIPNKQTIAGVRIGLIDDQFVVNPTTEQMEN 241 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++D TDS I+ ++G +++ + + I ++ K Sbjct: 242 SELDLMMAGTDSA-ILMIEG--YCDFLTEEKLLEAVEAGQVAIREICKA 287 >gi|167644014|ref|YP_001681677.1| polynucleotide phosphorylase/polyadenylase [Caulobacter sp. K31] gi|189037303|sp|B0T175|PNP_CAUSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167346444|gb|ABZ69179.1| Polyribonucleotide nucleotidyltransferase [Caulobacter sp. K31] Length = 716 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 90/246 (36%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R I + GS L G+T + ATL + G Sbjct: 316 IRIDGRTVDTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RALR ++ I + Sbjct: 376 EAFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRALRPMLPAKEDFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A + GA +A+ D L V+ I+ G++ G+ Sbjct: 432 EITESNGSSSMATVCGASLAMMDAGV-------------PLIRPVSGIAMGLILEKDGFA 478 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T G + +Q + A +++ L AK ++ Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTSQG-LTSLQMDIKIAGITEEIMKQALAQAKGGREHILG 537 Query: 233 LQKDVI 238 + Sbjct: 538 EMNKAM 543 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 84/249 (33%), Gaps = 43/249 (17%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRST 70 L +++ A+G+ L G+T +L TA + + + T G +P Sbjct: 18 LETGRIARQADGAVLATMGETVVLATAVFAKKAKPGQDFFPLTVNYIEKTYAAGKIP--- 74 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128 G KRE GR + + R+I R +R + Q++ C V+Q D Sbjct: 75 GGFFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVV--CTVLQHDLENDPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ A AL G + G + I++ E +D Sbjct: 130 AMCAASAALVISGA-------------PFMGPIGGCRVGYVNDEYILNPTLDELKESKMD 176 Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAM----LNLAKDRIADLIKLQ-- 234 T ++ E+Q +E +F+ A+ + LA+ + Q Sbjct: 177 LVVAGTADAVMMVESEIQELSEEIVLGGVSFAHKSMQAVINGIIELAEHAAKEPFDFQPE 236 Query: 235 -KDVISNEV 242 D + EV Sbjct: 237 DTDALKAEV 245 >gi|301791884|ref|XP_002930910.1| PREDICTED: exosome complex exonuclease RRP43-like [Ailuropoda melanoleuca] Length = 276 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 87/257 (33%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPP-TDTPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + SG G +Q + I + ++ L G ++ Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + K + ++ H A Sbjct: 137 CDIICLDYDGNILDACTFALLAALKNVQLPEVTINEETGLAEVHLKKKSYLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 256 VTRHKEVKKLMDEVIKS 272 >gi|300113661|ref|YP_003760236.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii C-113] gi|299539598|gb|ADJ27915.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii C-113] Length = 695 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R IS+T + GS L G+T L TL + I + Sbjct: 315 RIDGRDTTAIRPISITTGLLPRTHGSALFTRGETQSLVATTLGTERDAQVIDAIEGERRE 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R+L +VV I + + Sbjct: 375 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRSLNAVVPDEESFPYVIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G ++L D +K VA I+ G++ Sbjct: 431 ITESNGSSSMATVCGTSLSLMDAGV-------------PIKAPVAGIAMGLIKEADRFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G + +Q + +++ L A++ +++ Sbjct: 478 LSDILGDEDHLGDMDFKVAGTEKG-VTALQMDIKIDGITEEIMRTALTQAREGRFHILQK 536 Query: 234 QKDVISNE 241 ++IS Sbjct: 537 MNEIISTP 544 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 36/232 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A G+ +V++G+T +L T E + + T G + Sbjct: 13 RPLILETGCIARQASGAVVVRYGETVVLVTVVGMKEAVEGRDFFPLTVNYQERTYAAGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R LR + + + Q+I ++ Sbjct: 73 P---GGFFKRE---GRPTEKETLTSRLIDRPLRPLFPKNFVNEVQVIATVISSDSENDPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ GA AL +AA G + G +++ + Sbjct: 127 IPSLIGASAALTLSGI-------------PFATPIAAARVGYIDGQYVLNPTLSQMEESA 173 Query: 187 VDANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAML----NLAKDR 226 +D T+ ++ E Q E F ++ LA++ Sbjct: 174 LDLVVAGTEKAVLMVESEAQELPEEIMLGSVMFGHQEMQEVIQTIRELAEEA 225 >gi|295132795|ref|YP_003583471.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda SM-A87] gi|294980810|gb|ADF51275.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda SM-A87] Length = 731 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 28/249 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNT---KH 56 +RL GR+ ++R I GS + G+T L T T + + Sbjct: 317 IRLDGRKTTEIRPIWCEVDYLPSPHGSSIFTRGETQALATVTLGTSREANQVDLPTQQGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ ++ + + Sbjct: 377 ENFYLHYNFPPFSTGEAYPIRGTSRREIGHG----NLAQRALKGMIPSD--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172 +V++++G + A + +AL D + K V+ I+ G++ G Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGIQL-------------KKPVSGIAMGLISDGEDFA 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + S + L A+D +++ Sbjct: 478 VLSDILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILVKALKQARDGRLHILE 536 Query: 233 LQKDVISNE 241 D I+ Sbjct: 537 KLTDTIAEP 545 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REIS+ K A GS +V+ GD LL T + + + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVRMGDAMLLCTVVSSYTPTTMDFFPLTLDYREKFAAAGRFP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA R + R++ R LR + Q++I ++ D Sbjct: 76 ---GGYFKREA---RPSSEEILVMRLVDRVLRPLFPKDYKFETQVMI--QLMSHD----- 122 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D L + + + ++ + + G +++ + + D+ Sbjct: 123 ------PEVMPDALAGLAASAAIQVSDIPFETPISEVRVARIDGELVINPSFEQLEKADL 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D V + ++ V+G E S++ + A + I + Q Sbjct: 177 DM-MVGASADSVMMVEG--EMDEISEEEMAEAIKFAHEAIKVQCEAQ 220 >gi|114765823|ref|ZP_01444916.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis HTCC2601] gi|114541822|gb|EAU44859.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. HTCC2601] Length = 463 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R I V GS L G+T L TL I + HG + Sbjct: 68 RIDGRALDQVRPIQSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 127 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 128 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRLVSE 183 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 184 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLVLEDDGEYA 230 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 231 ILTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKKALAQAKDGRMHILS 289 Query: 233 LQKDVISN 240 +S Sbjct: 290 EMGKALSE 297 >gi|31415882|ref|NP_852480.1| exosome complex component RRP43 [Homo sapiens] gi|21759409|sp|Q96B26|EXOS8_HUMAN RecName: Full=Exosome complex component RRP43; AltName: Full=Exosome component 8; AltName: Full=Opa-interacting protein 2; Short=OIP-2; AltName: Full=Ribosomal RNA-processing protein 43; AltName: Full=p9 gi|18088472|gb|AAH20773.1| Exosome component 8 [Homo sapiens] gi|123992916|gb|ABM84060.1| exosome component 8 [synthetic construct] gi|123999809|gb|ABM87413.1| exosome component 8 [synthetic construct] gi|208966244|dbj|BAG73136.1| exosome component 8 [synthetic construct] Length = 276 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115 + P + SG G +Q + I + ++ L + + + Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 256 VTRHKEVKKLMDEVIKS 272 >gi|325133728|gb|EGC56384.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M13399] Length = 706 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102] gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102] Length = 706 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 95/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L + A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ +++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|309378199|emb|CBX23171.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 706 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|296203741|ref|XP_002749024.1| PREDICTED: exosome complex exonuclease RRP43-like [Callithrix jacchus] Length = 276 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + SG G +Q + I + ++ L G ++ Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINGETALAEVNLKKKSYLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 256 VTRHKEVKKLMDEVIKS 272 >gi|161869702|ref|YP_001598869.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis 053442] gi|189037311|sp|A9M3J0|PNP_NEIM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|161595255|gb|ABX72915.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis 053442] Length = 706 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|170747372|ref|YP_001753632.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium radiotolerans JCM 2831] gi|226702663|sp|B1LZQ1|PNP_METRJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|170653894|gb|ACB22949.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium radiotolerans JCM 2831] Length = 739 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 90/241 (37%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I V A GS L G+T L ATL + G Sbjct: 316 RIDGRDVKTVRSILSEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R V+ + I + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD G + +Q + A +++ L AKD A ++ Sbjct: 483 LGDEDHLGDMDFKVAGTDEG-VTSLQMDIKIAGITEEIMKIALAQAKDGRAHILAEMAKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 69.0 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 74/229 (32%), Gaps = 23/229 (10%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ L V++ A+G+ + +G+T +L T ++ +T Y + Sbjct: 14 RKLVLETGKVARQADGAVIATYGETSVLATVVAAKEPKP---GIDFMPLTVNYQERAYAA 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + + R+I R +R + Q+++ + Sbjct: 71 GRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFIEGWRNDTQVVVTVLTHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL ++ + G+ +DL Sbjct: 128 IVAMVAASAALTLSGVPFMGPIGGARVGYINGGYRLNPLVTETKEESSLDL-----VVAG 182 Query: 187 VDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIAD 229 +M +++ + E F HF ++ LA+ + Sbjct: 183 TQDAVLMVESEAKELSEDVMLG-AVMFGHKHFQPVIEAIIRLAEKAAKE 230 >gi|313668762|ref|YP_004049046.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ST-640] gi|313006224|emb|CBN87686.1| putative polyribonucleotide nucleotidyltransferase [Neisseria lactamica 020-06] Length = 706 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|88608486|ref|YP_505958.1| polynucleotide phosphorylase/polyadenylase [Neorickettsia sennetsu str. Miyayama] gi|123750038|sp|Q2GEY8|PNP_NEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88600655|gb|ABD46123.1| polyribonucleotide nucleotidyltransferase [Neorickettsia sennetsu str. Miyayama] Length = 757 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR ++R IS+ GS L G T L ATL +E+V I + Sbjct: 317 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 + Y LP + G A R+ G R+ +A+++V+ + + + Sbjct: 377 ESVLLHYNFLPYAVGEVGALRAPGRREIGHG----RLALKAVKAVLPGKEVFPYTLRLVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ ++DG + A + G+ +AL D + HVA I+ G++ Sbjct: 433 EITESDGSSSMATVCGSSLALMDTGV-------------PITKHVAGIAMGLITDGVRSA 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G IV +Q + S LN A +++ Sbjct: 480 VLSDISGDEDMLGDMDFKVAGTRNG-IVALQMDMKVRGISIATIRDALNQALAGRLHILE 538 Query: 233 LQKDVISNE 241 + VI+ Sbjct: 539 KMEHVIAKP 547 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 17/141 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 + + V++ A G+ V +G T +L TL++ + + + L +S Sbjct: 16 LHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLSGLALVTNFLAKSYAL 75 Query: 71 ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG-- 124 KRE G+ R R++ RA+R +++ + + + I C ++ A G Sbjct: 76 GRIPNGFFKRE---GKLSEREVLASRVVDRAVRPLIEENLVNE--VNIVCKLL-AHGNRK 129 Query: 125 --TRTAAITGAWVALHDCLQH 143 A+ A AL Sbjct: 130 VLPEIPALIAASAALQLSGIP 150 >gi|164428624|ref|XP_964355.2| hypothetical protein NCU00812 [Neurospora crassa OR74A] gi|157072219|gb|EAA35119.2| conserved hypothetical protein [Neurospora crassa OR74A] Length = 257 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 81/251 (32%), Gaps = 38/251 (15%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMW--------- 50 +R+ GR+ N++R I R A+GS ++ G T ++ E P Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72 Query: 51 IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110 +K+ + + S+ +R +R GR + Sbjct: 73 GGQSKNAEVAVNIVIAGFSSVDRKRR----GRGDN----------------LHTHLFPHS 112 Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170 I I V+ DG A I A +A D M D G + + Sbjct: 113 TINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTA-----GSTSTYAANDEG 167 Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 P++D+++ E+ + + DS + + + ML + D + Sbjct: 168 ADPLLDMNHQEEQELPGLTVATLGDSDRVAVLVCESRVQV---SRLEGMLAVGVDGCKQV 224 Query: 231 IKLQKDVISNE 241 ++ V+ + Sbjct: 225 REILDRVVREK 235 >gi|91085763|ref|XP_974155.1| PREDICTED: similar to CG11337 CG11337-PA [Tribolium castaneum] gi|270009999|gb|EFA06447.1| hypothetical protein TcasGA2_TC009329 [Tribolium castaneum] Length = 747 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 85/248 (34%), Gaps = 17/248 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +Q+R I + K GS + + G T + T TL+ + + M I Sbjct: 348 RCDGRDYDQLRNIECKVNLYKPLHGSAMFQRGQTQVFCTVTLDSHDSAMKLDPMAMLISG 407 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T + G G R + + L + I Sbjct: 408 VKEKNFFLHYEFPPFATKETGR----IGPIGRREIGHGALAEKGLTPSIPDDF--PFTIR 461 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A++ G +AL D + + + + + + Sbjct: 462 LTSEVLESNGSSSMASVCGGTLALMDAGVPIVAPAAGVAIGLITRYDDEKANITDY--RL 519 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + DL ED D+D T G I +Q + + A + ++++ Sbjct: 520 LTDLLGIEDYMGDMDFKIAGTKKG-ITALQADIKIPGLPLKIVMESIQKATEAKQKILQI 578 Query: 234 QKDVISNE 241 + I Sbjct: 579 MHECIDKP 586 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 27/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + ++ ++ A+G + GDT ++ TA + K + + +Y + Sbjct: 44 RSLKISTGQYARLADGCAVATLGDTSVMVTAVSKTKPSP----SNFLPLVVDYRQKSAAA 99 Query: 71 GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G R+ G +EI R+I R+LR + Q++ C+++ DG Sbjct: 100 G-RIPTNFFRRELGPSEKEILTSRLIDRSLRPLFPERFAYETQVV--CNMLAVDG----- 151 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 V D + + G V A+ GM+ I++ E + ++ Sbjct: 152 ------VNNPDVVSINAASAALALSDIPWNGPVGAVRLGMIDNEVIINPTRKELQSSILN 205 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQK 235 T +V ++G+A Q + L + ++ KLQK Sbjct: 206 LVLSATRKNLVVMLEGNANNIL--QQDLLKAVKLGTKEVQQIVASIEKLQK 254 >gi|269214445|ref|ZP_06158584.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC 23970] gi|269209893|gb|EEZ76348.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC 23970] Length = 707 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542 Query: 238 ISNE 241 ++ Sbjct: 543 VAGP 546 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 76 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 178 LVVAGTSKAVLM 189 >gi|225025578|ref|ZP_03714770.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC 23834] gi|224941616|gb|EEG22825.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC 23834] Length = 701 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGECGRMGAPKRREIGHG----RLAKRALLGVLPSPEEFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ +++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 28/234 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 +++ +++ A G+ V G+T +L T ++V + + T G +P Sbjct: 16 VTIETGEIARQAAGAVKVSMGETVVLVAVTANKEVKAGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVATVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G L G +++ + + +D Sbjct: 130 AMIGASAALV-------------LSGVPFAGPIGAARVGYLNGEYVLNPTKTQLAKSQLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T ++ +E +D + + + +I+ + +++ V Sbjct: 177 LVVAGTAQAVLMV---ESEAQILPEDVMLGAVVYGHNEMQAVIRAINE-LADAV 226 >gi|66267273|gb|AAH95236.1| Exosome component 8 [Danio rerio] Length = 277 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 88/254 (34%), Gaps = 25/254 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R +L A+GS LVK G+T ++ E VP G++ Sbjct: 23 RPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEA-QNKGYLVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQI----IID 115 + P + +G G ++Q + I + S +++L L + ++ Sbjct: 82 NVDLPPLCSS-----RFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163 CD+ + DG A IT AL E K + ++ + V + Sbjct: 137 CDIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGS 196 Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 IVD E+S V + + V + S + +N A Sbjct: 197 SFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRA 255 Query: 224 KDRIADLIKLQKDV 237 R ++ KL V Sbjct: 256 ITRNKEIRKLLDKV 269 >gi|50838810|ref|NP_001002865.1| exosome complex exonuclease RRP43 [Danio rerio] gi|49618917|gb|AAT68043.1| Opa-interacting protein 2 [Danio rerio] Length = 277 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 88/254 (34%), Gaps = 25/254 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R +L A+GS LVK G+T ++ E VP G++ Sbjct: 23 RPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEA-QNKGYLVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQI----IID 115 + P + +G G ++Q + I + S +++L L + ++ Sbjct: 82 NVDLPPLCSS-----RFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163 CD+ + DG A IT AL E K + ++ + V + Sbjct: 137 CDIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGS 196 Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 IVD E+S V + + V + S + +N A Sbjct: 197 SFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRA 255 Query: 224 KDRIADLIKLQKDV 237 R ++ KL V Sbjct: 256 LTRNKEIRKLLDKV 269 >gi|296840915|ref|ZP_06863772.2| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea ATCC 43768] gi|296839560|gb|EFH23498.1| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea ATCC 43768] Length = 707 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542 Query: 238 ISNE 241 ++ Sbjct: 543 VAGP 546 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 76 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 178 LVVAGTSKAVLM 189 >gi|309389238|gb|ADO77118.1| polyribonucleotide nucleotidyltransferase [Halanaerobium praevalens DSM 2228] Length = 696 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH---LLTTATLEEKVPMWIRNTKH- 56 +R GR +++R I A GS + G+T +LT + ++ ++ Sbjct: 310 IRPDGRDYDEIRPIWAEVDFVPRAHGSGVFTRGETQALSVLTLGSARDEQTLFGLGENET 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y G + R+ G + +AL V+ I I Sbjct: 370 KRYMHHYNFPSFCVGETSPMRSPGRREIGHGT----LGEKALLPVIPSEEEFPYTIRIVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 +V++++G + A+I G+ +AL +K VA I+ G++ Sbjct: 426 EVLESNGSSSQASICGSSLALMAAGV-------------PIKAPVAGIAMGLMKKDDDVV 472 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 I+ D+ ED D+D T++G I +Q + S D L AK ++ Sbjct: 473 ILSDIQGFEDFNGDMDFKVAGTEAG-ITALQMDIKLKGLSYDILEEALEKAKKGRMHIMG 531 Query: 233 LQKDVI 238 DVI Sbjct: 532 KMLDVI 537 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 26/229 (11%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLPR 68 + + K A GS +V+ GD+ +L TA ++E P + + G +P Sbjct: 12 QFNFQTGKLAKQANGSVVVRCGDSQVLVTAVMDEPRPGMNYFPLMVNYEERVYAIGQIPG 71 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 S ++RE GR + R+I R++R + QI+ + D Sbjct: 72 SV---MRRE---GRPRDEATLAARVIDRSIRPLFPEGFRHDVQIVATILSVDDDHDPEVL 125 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + + ++ I++ + E D+D Sbjct: 126 ALNGASAAL-------------TLSDIPFAGPIGGVKVALVDEQIIINPNEEERENSDLD 172 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 V I+ V+ SA S+ + +A I +I LQ+++ Sbjct: 173 L-VVAGSKDAIMMVEASANE--VSEATVLEAMKVAHAEIKKIISLQEEM 218 >gi|146299204|ref|YP_001193795.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium johnsoniae UW101] gi|187610263|sp|A5FJZ1|PNP_FLAJO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146153622|gb|ABQ04476.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium johnsoniae UW101] Length = 714 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 20/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR+ ++R I GS L G+T L T TL E Sbjct: 321 IRLDGRKTTEIRPIWCETDYLPSVHGSSLFTRGETQALATVTLGTSREANQIDSPSEQGE 380 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL++++ I + Sbjct: 381 EKFYLHYNFPPFSTGEAKPLRGTSRREVGHG----NLAQRALKNMIPAD--CPYTIRVVS 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +AL D M + + + G A+ + D Sbjct: 435 EVLESNGSSSMATVCAGTMALMDAGVQMVKPVSGIAMGLITDGEKFAV---------LSD 485 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + D L A+D ++ + Sbjct: 486 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIDGLRYDIMEQALAQARDGRLHILGKLTE 544 Query: 237 VIS 239 I+ Sbjct: 545 TIA 547 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 76/230 (33%), Gaps = 28/230 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R IS+ K A+GS +V+ G+ LL TA T V + A G Sbjct: 16 RSISIETGKLAKQADGSVVVRLGNCMLLATAVSARTSNPGVDFLPLTVDYREKFAAAGRF 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KREA R R++ R LR + Q++I ++ D Sbjct: 76 P---GGFFKREA---RPSDSEVLTMRLVDRVLRPLFPDDYHAETQVMI--QLMSHDDNV- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + ++ + + G +++ E D Sbjct: 127 ----------MPDALAGLAASAALAVSDIPFYNLISEVRVARIDGKLVINPSRTELEKSD 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA-DLIKLQK 235 +D + + V+G E S+ + A + I + QK Sbjct: 177 IDM-MIGASLDSVAMVEG--EMKEISEAEMIEAIKFAHEAIKVQIHAQQK 223 >gi|19705029|ref|NP_602524.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|81485419|sp|Q8RIA1|PNP_FUSNN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|19712941|gb|AAL93823.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 703 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RAL V+ I + + Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPTEEEFPYTIRVVSE 443 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 444 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 490 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A +++L Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARIQILEL 549 Query: 234 QKDVISNE 241 + IS Sbjct: 550 MNNTISKP 557 Score = 63.6 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 29/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +S+ + G+ ++++GDT LL+TA + + + G Sbjct: 18 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSSGKF 77 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + + + I V+ D Sbjct: 78 P---GGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYD---- 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + + D L + G VA++ G G I++ E + Sbjct: 126 -------EINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 178 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++VE A ++ + A + I + + Q++ Sbjct: 179 LDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 225 >gi|316983743|gb|EFV62724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis H44/76] gi|325200556|gb|ADY96011.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis H44/76] Length = 706 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|225075235|ref|ZP_03718434.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens NRL30031/H210] gi|224953410|gb|EEG34619.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens NRL30031/H210] Length = 707 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542 Query: 238 ISNE 241 ++ Sbjct: 543 VAGP 546 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 76 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 178 LVVAGTSKAVLM 189 >gi|126327460|ref|XP_001368047.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 [Monodelphis domestica] Length = 276 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 90/257 (35%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P + + G+I Sbjct: 23 RPDGRELGEFRTTTVNIGSITTADGSALVKLGNTTVICGVKGEFAAPP-VDSLNKGYIVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + SG G +Q + I + ++ L G ++ Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISHGKLAWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPAVIINEETGLAEVNLKKKSHLNIRTHPIAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAIFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 256 VTRHKEVKKLMDEVIKS 272 >gi|109120492|ref|XP_001085228.1| PREDICTED: exosome complex exonuclease RRP43 isoform 2 [Macaca mulatta] Length = 276 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + SG G +Q + I + ++ L G ++ Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 256 VTRHKEVKKLMDEVIKS 272 >gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 712 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + S++ L AK Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|29840519|ref|NP_829625.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila caviae GPIC] gi|75539485|sp|Q822C1|PNP_CHLCV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29834868|gb|AAP05503.1| polyribonucleotide nucleotidyltransferase [Chlamydophila caviae GPIC] Length = 694 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R GR +R IS+ GSCL G+T + T E + + Sbjct: 313 VRSDGRAITTIRPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAMAQRYEDLNGEGL 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL + A I I+ Sbjct: 373 AKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHTLPDPAKFPYTIRIES 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G +AL D +K +A I+ G++ Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGV-------------PIKTPIAGIAMGLILDNDHVT 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D G I Q + + A L AK ++ Sbjct: 476 ILSDISGLEDYLGDMDFKVAGNTEG-ITAFQMDIKVEGITPTIMQAALAQAKAGRQHILD 534 Query: 233 LQKDVIS 239 + K+ ++ Sbjct: 535 IMKEALA 541 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 31/233 (13%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++ A G+ L + +T + + A LEE V + ++ + ++ G Sbjct: 18 FETGKIARQANGAVLARMQETWVFSSVCAANLEEPVDFLPLRVDYQE---KFSSIGKTLG 74 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129 +KRE GR R R+I R++R + + Q++ DG T A Sbjct: 75 GFIKRE---GRPTEREILTSRLIDRSMRPSLPNRLMQDVQVLSYVW--SYDGVTLPDPIA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 I G AL VA + G + +V+ E ++ Sbjct: 130 ICGVSAALA-------------ISDIPQISVVAGVRVGFVNNSWVVNPTKAEMDVSRMEL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T++ I+ ++G +++ + IA + + KD + +V Sbjct: 177 VLAGTENA-ILMIEG--HCDFLTEEQVIEAIEFGHKHIATICRAIKD-LQQKV 225 >gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST24] gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-ST24] Length = 717 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + S++ L AK Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676] gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185] gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2] gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-15] gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-Cer4] gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550] gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 10876] gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis BMB171] gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 10876] gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550] gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BDRD-Cer4] gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-15] gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2] gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185] gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676] gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis BMB171] Length = 712 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + S++ L AK Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|325285569|ref|YP_004261359.1| polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM 7489] gi|324321023|gb|ADY28488.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM 7489] Length = 747 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 18/230 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR+ +++R I GS + G+T L T TL E Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+++V + + Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKNMVPAD--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +AL D + + + G ++ G + D Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVQLIKPVSGIAM-----GLISDAETGKYA--VLSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED D+D T+ G I Q + S + L A++ Sbjct: 484 ILGDEDHLGDMDFKVTGTEDG-ITACQMDIKVKGLSYEILVNALKQAREG 532 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REIS+ K A GS +V+ G+ LL T + V + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGNCMLLCTLVSNYKQSDVDFLPLTVDYREKFASAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I ++ D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMI--QLMSHDENV-- 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D + + + + ++ G + G I++ + D+ Sbjct: 126 ---------MPDAMAGLAASAAIQLSDVPFETPISEARVGRINGEFIINPTRAQLEESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + + ++ V+G E S++ + A + I Q Sbjct: 177 DM-MIGASADSVMMVEG--EMLEISEEEMAEAIKFAHEAIKVQCAAQ 220 >gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus B4264] gi|226702617|sp|B7HDT0|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264] Length = 712 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + S++ L AK Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|118602474|ref|YP_903689.1| polynucleotide phosphorylase/polyadenylase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|187611284|sp|A1AWB1|PNP_RUTMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118567413|gb|ABL02218.1| Polyribonucleotide nucleotidyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 695 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R+ GR +RE+ + V + GS L G+T L TL K + + Sbjct: 315 RIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKREAQLIEKLESSERQ 374 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + Y P G + R+ G R++ R + + + + + Sbjct: 375 NDYFLLHYNFPPYCVGEIGRVGTTKRREIGHG----RLVRRGIAACLPSIEEFPYTVRVV 430 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++ +++G + A+I GA ++L D +K VA I+ G++ Sbjct: 431 SEITESNGSSSMASICGASLSLMDAGV-------------PIKAPVAGIAMGLVKEGDRF 477 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + +++ L AK+ +++ Sbjct: 478 TILTDILGDEDHLGDMDFKVAGTSRG-INALQMDIKIQGITREIMEIALKQAKEARLNIL 536 Query: 232 KLQKDVI 238 VI Sbjct: 537 GQMNQVI 543 Score = 82.1 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 27/217 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 I+L +++ A G+ LV DT +L T + + + T G +P Sbjct: 15 ITLETGRIARQAHGAVLVSMDDTQVLVTVVGSKKMHPGQDFFPLSVDYIEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KREA R + R+I R +R + + Q++I ++ Sbjct: 74 --GGFLKREA---RPSEKETLTSRLIDRPIRPLFPNGFMNEVQVLITVISANSEVDPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + + G G ++ Y E D+D Sbjct: 129 SMLGVSAALSISGI-------------PFNGPIGSARVGYSNGKYTLNPTYTELVDSDLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 TD I+ V+ +E + S+ + A + Sbjct: 176 MVVAGTDKA-ILMVE--SEASELSEKIILDAIIYAHE 209 >gi|77464694|ref|YP_354198.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides 2.4.1] gi|126463534|ref|YP_001044648.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides ATCC 17029] gi|332559587|ref|ZP_08413909.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides WS8N] gi|123590859|sp|Q3IYT7|PNP_RHOS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611277|sp|A3PNG0|PNP_RHOS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77389112|gb|ABA80297.1| polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides 2.4.1] gi|126105198|gb|ABN77876.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides ATCC 17029] gi|332277299|gb|EGJ22614.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides WS8N] Length = 716 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I V GS L G+T L TL I + HG + Sbjct: 318 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP- 173 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGKWA 480 Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRMHILG 539 Query: 233 LQKDVISN 240 +S+ Sbjct: 540 EMSKALSS 547 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ V+ D Sbjct: 75 --GGFFKREA---RPSEKETLTSRLIDRPIRPLFVDGF--KNEVLLIVTVLSHDLVNEPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182 A+ A AL G + A G G +++ D + Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E S+ + + + +I + Sbjct: 175 ENPEQRLDLVIAGTKDAVMMVES-EAYELSEAEMLGAVKFGHEAMQPVIDM 224 >gi|312898454|ref|ZP_07757844.1| polyribonucleotide nucleotidyltransferase [Megasphaera micronuciformis F0359] gi|310620373|gb|EFQ03943.1| polyribonucleotide nucleotidyltransferase [Megasphaera micronuciformis F0359] Length = 717 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTK---H 56 +R GR+ N++R +S + K G+ L G T +L+ ATL I Sbjct: 312 IRPDGRKVNEVRPVSCEVGLFKRTHGTGLFTRGQTQILSFATLAPLSEAQHIDGVGTETE 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G ++ RAL V+ I + Sbjct: 372 RRYMHHYNFPSFSVGETRSSRGPGRREIGHG----KLAERALTQVMPSEEEFPYAIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + ++ G+ +AL D +K V+ ++ G++ Sbjct: 428 EVLESNGSSSMGSVCGSTLALMDAGV-------------PIKAPVSGVAMGLVTKDDDFT 474 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + S++ L A + ++ Sbjct: 475 ILTDIQGMEDALGDMDFKVAGTTKG-VTAIQMDIKIKGLSREILDTALKQAHEGRLHIMD 533 Query: 233 LQKDVI 238 V+ Sbjct: 534 KMLAVL 539 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 27/228 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +++ K + G+ LV++GDT + +AT E + + G + Sbjct: 13 RPLTVEVGKLAKQSSGAALVRYGDTAVFVSATGSKEAREDADFFPLTVDYEEKMYAVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ + R+I R +R + + ++ + D Sbjct: 73 P---GGFIKRE---GKPPESATLFARLIDRPIRPLFPKTYRHDVHVVAYDFAVDHDNAPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA VAL G +A + G + G I++ + D Sbjct: 127 IAAMIGASVALCM-------------SHIPFAGPIAGVRVGRIDGNFIINPTVEQSEKSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 +D T I+ V+G A+ S D A++ A + I +++ Q Sbjct: 174 MDIVVAGTKDA-ILMVEGGAKEVPES-DILDAIM-FAHEEIRKVVEFQ 218 >gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W] gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W] Length = 712 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + S++ L AK Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|257791379|ref|YP_003181985.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM 2243] gi|257475276|gb|ACV55596.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM 2243] Length = 741 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57 R GR+ +R + + GS L + G T L T + + I + Sbjct: 315 RADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNEWQRLDTIDPAEGK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y P TG + A R+ G + RAL V+ I + + Sbjct: 375 RYMHQYNFPPYCTGETGRMGAPKRREIGHG----ALAERALIPVLPSEDEFPYAIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V++++G + A+ G+ +AL D +K V+ I+ G++ I Sbjct: 431 VLESNGSSSMASTCGSTLALMDAGV-------------PIKAPVSGIAMGLIKEGDDVVI 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + S D L A + A ++ Sbjct: 478 LSDIQGIEDFLGDMDFKVCGTAKG-ITALQMDNKARGLSVDILARALKQASEGRAYILDA 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MLETIA 542 Score = 71.7 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 28/230 (12%) Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70 L ++K A GS +V GDT +L TA + E+ + G +P Sbjct: 16 RLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKDYDFFPLTVDFIEKMYAVGRIPGGY 75 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R R + G RM+ R +R ++ V+ + T + Sbjct: 76 LKREARPSDKGTLT------ARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDTICV 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVD 188 GA AL G A + G + G IV+ + E D++ Sbjct: 130 MGASAALMLGAA-------------PFDGPAACVRIGRDVETGEFIVNPTFEESENSDLE 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T +I V+ A+ S++ A + ++ IA + Q+ + Sbjct: 177 LTIAGTAD-YISMVEAGADE--ISEEDMLAAMTFGQEAIAAFCEAQQRFL 223 >gi|330982561|gb|EGH80664.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 519 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 93 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 152 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 153 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 208 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 209 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 255 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 256 LTDILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 307 >gi|116073519|ref|ZP_01470781.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. RS9916] gi|116068824|gb|EAU74576.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. RS9916] Length = 721 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 34/237 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REI LT + A GS +++ GDT +L TA + E + + G +P Sbjct: 13 REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123 G+ ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 73 ---GSFMRRE---GRPPERATLISRLIDRPMRPLFPNWLRDDLQIVATCMSLDERVPAD- 125 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A +G +AA+ G+L +++ Y E Sbjct: 126 ---VLAVTGASLATLMAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + + ++ + + +LIK Q+ ++ Sbjct: 170 RGDLDLVVAGTPEG-VVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQQAILKE 223 Score = 96.7 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 27/246 (10%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 R+ GR +++R IS V K GS L + G T +L+TATL + + Sbjct: 323 RVDGRALDEVRTISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSNE 382 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G + RA+ V+ + + Sbjct: 383 KTYLHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERAIIPVLPAKDTFPYVVRVVS 438 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V+ ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKSPVSGAAMGLIKEGDEVR 485 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D TD G I +Q + + +N A+ +++ Sbjct: 486 ILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVNTVADAVNQARPARLHILE 544 Query: 233 LQKDVI 238 + I Sbjct: 545 KMMEAI 550 >gi|298246516|ref|ZP_06970322.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer DSM 44963] gi|297553997|gb|EFH87862.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer DSM 44963] Length = 816 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 30/250 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR +R I+ + GS L G T +L+ T EE+V + + Sbjct: 311 IRPDGRDTKTIRNITCEVGLLPRTHGSALFTRGQTQVLSVITLGSPGEEQVLDGLGTNDN 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG R+ G + RA+ V+ I Sbjct: 371 KRFMHHYNFPPYSTGESKPLRGPGRREIGHG----ALAERAVSPVIPTQEEFPYTIRAVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D++ ++G T ++ G +AL + + VA ++ G++ G Sbjct: 427 DILSSNGSTSMGSVCGTTLALMEAGV-------------PIHAPVAGVAMGLITGEGERE 473 Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 + D+ ED+ D+D T G + +Q + + D L A + Sbjct: 474 GKWAVLSDIQGIEDALGDMDFKVAGTADG-VTALQMDIKVKGITYDVMAKALEQAHEGRM 532 Query: 229 DLIKLQKDVI 238 +++ D I Sbjct: 533 FIMEKMLDAI 542 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 27/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +S+ V++ + G+ LV++GDT +L TA E + + G + Sbjct: 12 RVMSIETGRVAEQSSGAVLVRYGDTVILATAVGSDEPREGIDFFPLTVDVEERMYAAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+ R LR + QI+I + + Sbjct: 72 P---GGFIKRE---GRATEHAILASRLTDRPLRPLFPKGYRNDVQIVITVLSVDQENDPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I GA AL G V A+ G + +++ S Sbjct: 126 IMGIVGASAALS-------------ISDVPFAGPVGAVRVGYVDDQFVINPPASAMSRSK 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 +D T I+ V+ A+ +D L + + + DL+K+Q+ ++ Sbjct: 173 LDLAIAGTADA-IMMVEAGAKE--LPEDMMLEALRVGHEALQDLVKMQEKLV 221 >gi|28174955|gb|AAH27228.2| Pnpt1 protein [Mus musculus] Length = 647 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R IS + K GS L + G T +L T T + +++ I Sbjct: 222 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 281 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL V+ I Sbjct: 282 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 335 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + G + Y Sbjct: 336 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 392 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 393 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 451 Query: 233 LQKDVISNE 241 + IS Sbjct: 452 IMNKTISKP 460 Score = 43.5 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 17/114 (14%) Query: 97 ALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154 ++R + Q++ C+++ DG A+ GA VAL Sbjct: 1 SIRPLFPAGYFYDTQVL--CNLLAVDGINEPDILAVNGASVALS-------------LSD 45 Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 G V A+ GM+ G +V+ E S+ ++ IV ++ SAE Sbjct: 46 IPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQIVMLEASAEN 99 >gi|253583637|ref|ZP_04860835.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium ATCC 27725] gi|251834209|gb|EES62772.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium ATCC 27725] Length = 699 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+ ++R + V GS + G+T + TL K + + Sbjct: 324 RVDGRKTTEIRPLFAETGVLPIPHGSAMFTRGETQAIVVTTLGTKEDEQLVDDLEKEYFK 383 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RAL V+ I + + Sbjct: 384 KFYLHYNFPPYSVGETGRMGSPGRRELGHGS----LAERALSYVIPSEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L A D +++ + Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITEEIMRIALKQALDARNEILVV 545 Query: 234 QKDVIS 239 + IS Sbjct: 546 MNNAIS 551 Score = 58.2 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 27/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +S + +++ + G+ +V++G+T LL+T + + + G Sbjct: 14 RTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + I+ Sbjct: 74 P---GGFNKRE---GRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSYDEKNTPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I G+ +AL G VA + G G I++ E+ Sbjct: 128 YLGIIGSSMAL-------------MLSDLPFLGPVAGVVVGYKNGEFILNPT-PEELETS 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V + V+ A+ ++ A + A + I + Q++ Sbjct: 174 ELELSVAGSKDAVNMVEAGAKE--LDEETMLAAIMFAHENIKKICAFQEE 221 >gi|325831548|ref|ZP_08164802.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1] gi|325486802|gb|EGC89250.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1] Length = 741 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57 R GR+ +R + + GS L + G T L T + + I + Sbjct: 315 RADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNEWQRLDTIDPAEGK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y P TG + A R+ G + RAL V+ I + + Sbjct: 375 RYMHQYNFPPYCTGETGRMGAPKRREIGHG----ALAERALIPVLPSEDEFPYAIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V++++G + A+ G+ +AL D +K V+ I+ G++ I Sbjct: 431 VLESNGSSSMASTCGSTLALMDAGV-------------PIKAPVSGIAMGLIKEGDDVVI 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + S D L A + A ++ Sbjct: 478 LSDIQGIEDFLGDMDFKVCGTAKG-ITALQMDNKARGLSVDILARALKQASEGRAYILDA 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MLETIA 542 Score = 71.7 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 28/230 (12%) Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70 L ++K A GS +V GDT +L TA + E+ + G +P Sbjct: 16 RLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKDYDFFPLTVDFIEKMYAVGRIPGGY 75 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R R + G RM+ R +R ++ V+ + T + Sbjct: 76 LKREARPSDKGTLT------ARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDTICV 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVD 188 GA AL G A + G + G IV+ + E D++ Sbjct: 130 MGASAALMLGAA-------------PFDGPAACVRIGRDVETGEFIVNPTFEESENSDLE 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T +I V+ A+ S++ A + ++ IA + Q+ + Sbjct: 177 LTIAGTAD-YISMVEAGADE--ISEEDMLAAMTFGQEAIAAFCEAQQRFL 223 >gi|317490521|ref|ZP_07948999.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. 1_3_56FAA] gi|316910372|gb|EFV32003.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. 1_3_56FAA] Length = 741 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57 R GR+ +R + + GS L + G T L T + + I + Sbjct: 315 RADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNEWQRLDTIDPAEGK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y P TG + A R+ G + RAL V+ I + + Sbjct: 375 RYMHQYNFPPYCTGETGRMGAPKRREIGHG----ALAERALIPVLPSEDEFPYAIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V++++G + A+ G+ +AL D +K V+ I+ G++ I Sbjct: 431 VLESNGSSSMASTCGSTLALMDAGV-------------PIKAPVSGIAMGLIKEGDDVVI 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + S D L A + A ++ Sbjct: 478 LSDIQGIEDFLGDMDFKVCGTAKG-ITALQMDNKARGLSVDILARALKQASEGRAYILDA 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MLETIA 542 Score = 71.7 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 28/230 (12%) Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70 L ++K A GS +V GDT +L TA + E+ + G +P Sbjct: 16 RLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKDYDFFPLTVDFIEKMYAVGRIPGGY 75 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R R + G RM+ R +R ++ V+ + T + Sbjct: 76 LKREARPSDKGTLT------ARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDTICV 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVD 188 GA AL G A + G + G IV+ + E D++ Sbjct: 130 MGASAALMLGAA-------------PFDGPAACVRIGRDVETGEFIVNPTFEESENSDLE 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T +I V+ A+ S++ A + ++ IA + Q+ + Sbjct: 177 LTIAGTAD-YISMVEAGADE--ISEEDMLAAMTFGQEAIAAFCEAQQRFL 223 >gi|269958853|ref|YP_003328641.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str. Israel] gi|269848683|gb|ACZ49327.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str. Israel] Length = 802 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATL---EEKVPMWIRNTKHG 57 R+ GR +Q+R I + + + GS L GDT L TA +E+V + Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y + G A G R ++ RA+ V+ A I + + Sbjct: 380 RFLLHYNFPSYAVGE----AAALRPPGRREIGHGKLAWRAIHPVLPTKADFPYTIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ++DG + A + GA +AL D ++ + + +G A+ + D+ Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAV---------LSDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + D L A+D +I V Sbjct: 487 IGDEDHLGDMDFKVAGTKEG-ITALQMDMKIRGIGFDIIEKSLQQARDGRLFIIGKMDKV 545 Query: 238 ISN 240 I Sbjct: 546 IKE 548 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 90/231 (38%), Gaps = 28/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R + + +++ A+G+ +V +G T +L+T +E V + + G +P Sbjct: 14 RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAVGRIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE G+ R I R++ R++R + ++I C+++ D Sbjct: 74 ---GGFFKRE---GKPSDRETLISRLVDRSIRPLFPAGFCDE--VVIVCNLLSYD----- 120 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTI 185 V+ + + + + +A G + G I++ E + Sbjct: 121 ------QVSPPETVALIGAAAALAISGIPFSTPIAGAKIGYIREEGRYILNPSAEELARS 174 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D + T S +V V+ +E + S+D L + ++ L ++ Sbjct: 175 ELDMFYSGTKS-SVVMVE--SEASELSEDEMLGALTFGHENCTQVLDLIEE 222 >gi|209966184|ref|YP_002299099.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum centenum SW] gi|226702682|sp|B6IVG3|PNP_RHOCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|209959650|gb|ACJ00287.1| polyribonucleotide nucleotidyltransferase, putative [Rhodospirillum centenum SW] Length = 707 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I V A GS L G+T L ATL I + G Sbjct: 314 RIDGRTTVDIRPIVSQVGVLPRAHGSALFTRGETQALVVATLGTNQDEQIVDALEGEYRE 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ I + + Sbjct: 374 SFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAVRPLLPTKETFPYTIRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G+ +++ D + + + +G A+ + D+ Sbjct: 430 ITESNGSSSMATVCGSSLSMMDAGVPLPRPVAGIAMGLIKEGEKFAV---------LSDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + + +++ L AKD ++ Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-VTALQMDIKITSITEEIMKIALAQAKDGRVHILSEMNKA 539 Query: 238 ISN 240 ++ Sbjct: 540 LNT 542 Score = 82.1 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 75/225 (33%), Gaps = 34/225 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ L V++ A+G+ +GDT +L TA + V + + G + Sbjct: 14 RKLVLETGKVARQADGAVWASYGDTVVLATAVAAKAPKPGVDFFPLTVNYQEKAFAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + Q+I+ + Sbjct: 74 P---GGFFKRE---GRPTEKEVLTSRLIDRPIRPLFADGYRNETQVIVTVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ AL G + A G G +++ + D Sbjct: 128 IVAMVATSAALTISGI-------------PFLGPIGAARVGYKDGQFVLNPTLEQVEASD 174 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNL 222 +D T G ++ V+ A+ F F +++L Sbjct: 175 LDLVVAGTTEG-VLMVESEAKELPEDVMLGAVMFGHREFQPVIDL 218 >gi|123169759|sp|Q14LB9|PNP_SPICI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110005388|emb|CAK99711.1| 3' exoribonuclease transmembrane protein [Spiroplasma citri] Length = 702 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 RL GR+ +Q+R +S + GS L G+T +L+ T E ++ I + + Sbjct: 320 RLDGRKLDQIRPLSSEIDILPVVHGSALFTRGETQVLSVVTLGALGENQIIDGITDEESK 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + G R + + L ++ + I I + Sbjct: 380 RFMHHYNFPAFSVGETGR----MGPPSRREIGHGALGEKVLLQIIPSEKVFPYTIRIVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V++++G T A+I A +AL + V I+ G++ Sbjct: 436 VLESNGSTSQASICAATLALMAAGV-------------PITAPVVGIAMGLIKEKNNYTI 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T +G I +Q + ++ L AK Sbjct: 483 LTDIQGMEDHLGDMDFKVAGTATG-ICALQMDIKIVGINKAILQEALKAAKKA 534 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 26/223 (11%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 K A GS LV++GDT +L TAT+ K V + G +P G +KRE Sbjct: 24 KQASGSVLVRYGDTVVLVTATVNNKLSEVDFFPLTVVFQEKLYSVGKIP---GGFLKRE- 79 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 G+ R+I RALR + + QI+I+ + D R ++ A +AL Sbjct: 80 --GKPSEYGTLSARVIDRALRPLFSENFRNEVQIVINVLAVDNDNDVRMVSLFAASLALS 137 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVA-AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G VA A+ I++ + + ++ TD Sbjct: 138 -------------ISKIPFAGPVAGALVTVDQKNNIIINPTLEQINDGQMELIVAGTDEA 184 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 I V+ A+ S++ + D I LI Q ++I+ Sbjct: 185 -INMVEAGAKE--VSENLMLQAILAGHDVIQQLIAFQHEIIAK 224 >gi|56416731|ref|YP_153805.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale str. St. Maries] gi|81359135|sp|Q5PAY0|PNP_ANAMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56387963|gb|AAV86550.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str. St. Maries] Length = 805 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATL---EEKVPMWIRNTKHG 57 R+ GR +Q+R I + + + GS L GDT L TA +E+V + Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y + G A G R ++ RA+ V+ A I + + Sbjct: 380 RFLLHYNFPSYAVGE----AAALRPPGRREIGHGKLAWRAIHPVLPTKADFPYTIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ++DG + A + GA +AL D ++ + + +G A+ + D+ Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAV---------LSDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + D L AKD +I V Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545 Query: 238 ISN 240 I Sbjct: 546 IKE 548 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 25/191 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R + + +++ A+G+ +V +G T +L+T +E V + + G +P Sbjct: 14 RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE G+ R I R++ R++R + I+I C+++ D Sbjct: 74 ---GGFFKRE---GKPSDRETLISRLVDRSIRPLFPTGFCDE--IVIVCNLLSYD----- 120 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--IVDLDYGEDSTI 185 V+ + + + + +A G + I++ E + Sbjct: 121 ------QVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARS 174 Query: 186 DVDANFVMTDS 196 ++D + T S Sbjct: 175 ELDMFYSGTKS 185 >gi|260785852|ref|XP_002587974.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae] gi|229273129|gb|EEN43985.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae] Length = 1444 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 74/242 (30%), Gaps = 30/242 (12%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64 GR+ R L V A GS ++ G T ++ ++ T G + E Sbjct: 1198 GRRTAGPR-TDLHAGVVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELK 1256 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 + R + + + G ++ +AL V L Q+ + V+Q DG Sbjct: 1257 FATFACRRRRQHIQDNQEKDG-----ALIVLQALEPAVCLDRFPKSQVDVYITVLQDDGS 1311 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AAIT A L D M D VA S ++D GE+ + Sbjct: 1312 ALAAAITCAAAGLADAGVMMYDI-------------VAGCSVRQCGERQLLDPSVGEELS 1358 Query: 185 IDV----DANFV----MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + D V + + + Q + + + KD Sbjct: 1359 QEGESAEDHGMVTVGLLPSLNQVSALTLDGH---LQQQTAVQAVKTCIGGCQGIYPILKD 1415 Query: 237 VI 238 + Sbjct: 1416 CL 1417 >gi|332307057|ref|YP_004434908.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174386|gb|AEE23640.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 703 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 89/248 (35%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R + + + GS L G+T + ATL + + + Sbjct: 314 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQMIDGLNGKEDS 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R +++V+ + + + Sbjct: 374 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIQAVMPSEKEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKNDENFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +Q+ L AK+ ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEG-ITALQMDIKIEGITQEIMQVALKQAKEARLHILGV 535 Query: 234 QKDVISNE 241 IS Sbjct: 536 MDQAISGH 543 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 27/225 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT +L + + + + T G +P Sbjct: 15 VTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + QII+ + T Sbjct: 74 --GGFFKRE---GRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEIPTDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G V A G G +++ E T +D Sbjct: 129 SLIGTSAALA-------------ISGMPFNGPVGAARVGYTDGQYVLNTRTSELETSQLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 T G ++ V+ AE S+D + +++ ++ Sbjct: 176 LVVAGTK-GAVLMVESEAE--VLSEDVMLGAVMYGHEQMQTVVNA 217 >gi|254804638|ref|YP_003082859.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha14] gi|254668180|emb|CBA04880.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha14] Length = 706 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|308233974|ref|ZP_07664711.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM 15829] gi|328944017|ref|ZP_08241482.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM 15829] gi|327491986|gb|EGF23760.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM 15829] Length = 751 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 30/249 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------TK 55 R+ GR ++R + + GS L + G T +L+ ATL + W R Sbjct: 319 RVDGRSATEVRPLMVKGDYLPLVHGSGLFQRGQTQVLSIATLG-MLSEWQRLDTIEPTEG 377 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P TG + + R+ G + RAL V+ I + Sbjct: 378 KRYIH-HYNFPPYCTGETGRLGSPKRREIGHG----NLAERALLPVIPSEEEFPYAIRVV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V++++G + A+ G+ +AL D +K V+ ++ G++ Sbjct: 433 SEVMESNGSSSMASTCGSTLALMDAGV-------------PIKRPVSGVAMGLIQEEGKT 479 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + + + L A + ++ Sbjct: 480 VVLTDIQGLEDFLGDMDFKVTGTTKG-ITAMQMDNKATGLTPEILRQALKQAHEGRMHIL 538 Query: 232 KLQKDVISN 240 + Sbjct: 539 DAMLAAVPQ 547 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 75/219 (34%), Gaps = 27/219 (12%) Query: 22 KYAEGSCLVKFGDTHL--LTTATLEEK-VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 K A G CLV GD+ + + E K + G +P G +KREA Sbjct: 24 KQATGQCLVSCGDSTVNLTVVVSKERKNYDFFPLTVDFIEKMYAVGRIP---GGYLKREA 80 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 R ++ RMI R +R QI+ V T + GA A++ Sbjct: 81 ---RPTEKATLTARMIDRPIRPSFPDGFRNEVQIVAMPLVADQIHPVDTICVMGASAAMY 137 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDANFVMTDS 196 +G +A + G G +V+ Y E D+D +++ Sbjct: 138 -------------TGGVPFEGPLACVRIGRDKTTGEYLVNPTYEERKNSDLDLELAGSET 184 Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 I ++ AE S+D + + IA QK Sbjct: 185 F-ISMLEAGAEE--ISEDDMLDAMAFGQKAIAAFCAEQK 220 >gi|254669727|emb|CBA03893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha153] Length = 706 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|240123023|ref|ZP_04735979.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID332] Length = 706 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT + T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|150388833|ref|YP_001318882.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470925|sp|A6TM05|PNP2_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 2; AltName: Full=Polynucleotide phosphorylase 2; Short=PNPase 2 gi|149948695|gb|ABR47223.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 702 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R R+ +++R IS + G+ L G+T +LT TL + + Sbjct: 311 IRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRDAQRIDGLGEEDE 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G S R+ G ++ RAL+ ++ I + Sbjct: 371 KRYMHHYNFPPYSVGETRFMRGPSRREIGHG----ALVERALKPMIPCKEDFPYAIRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V+ +G + A++ G+ ++L D +KG VA I+ G++ Sbjct: 427 EVLACNGSSSQASVCGSTLSLMDAGV-------------PIKGMVAGIAMGLIKEEGQIA 473 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T++G I +Q + A ++ L AK ++ Sbjct: 474 ILSDIQGMEDALGDMDLKVAGTENG-ITALQMDIKIAGIDRNIMETALAQAKIGRTHILN 532 Query: 233 LQKDVISNE 241 K+ I++ Sbjct: 533 KMKEAITSP 541 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 27/225 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + V++ A+GSC++K+GDT +L TA +E + + + + G + Sbjct: 12 RPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE+ R ++ R+I R +R + Q+I + D Sbjct: 72 P---GGFIKRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCPPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 +A+ G+ +AL + G A++S GM+ G IV+ + + Sbjct: 126 ISAMIGSSIALS-------------VSNIPFMGPTASVSVGMIDGKYIVNPTSEQKELSE 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 ++ T ++ ++ A ++ + A + I ++ Sbjct: 173 LELIVSGTKDA-VMMIEAGANE--LTEAQILDAIMFAHEEIKKIV 214 >gi|240112443|ref|ZP_04726933.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae MS11] gi|240117467|ref|ZP_04731529.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID1] gi|240125275|ref|ZP_04738161.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-92-679] Length = 706 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT + T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|319649514|ref|ZP_08003670.1| PnpA protein [Bacillus sp. 2_A_57_CT2] gi|317398676|gb|EFV79358.1| PnpA protein [Bacillus sp. 2_A_57_CT2] Length = 706 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 84/249 (33%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR + +R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRGLDVIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEEE 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL ++ I + Sbjct: 375 KRFMHHYNFPNFSVGE----TGPIRGPGRREIGHGALGERALEPIIPSEKDFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKSGEHYS 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIEGLSREILEEALQQAKKGRMQILD 536 Query: 233 LQKDVISNE 241 I Sbjct: 537 SMLSTIGQP 545 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 96/235 (40%), Gaps = 27/235 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K + + + G +P Sbjct: 15 RKLTVEIGQLAKQANGAVLVRYGDTVVLSTATASKEPKNLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + + + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNDVQVVSMVMSVDQNCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A +S G + G I++ + D+ Sbjct: 129 AAMFGSSLALS-------------VSDIPFGGPIAGVSVGRIDGEFIINPSVDQAEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T I V+ A+ ++ + + I LI Q++ I++E+ Sbjct: 176 SLVVAGTKDA-INMVEAGADEVP--EETMLEAIMFGHEEIKRLIAFQEE-IASEI 226 >gi|77797833|ref|NP_001030000.1| exosome complex exonuclease RRP45 [Gallus gallus] gi|50593178|gb|AAT79383.1| polymyositis/scleroderma autoantigen 1 [Gallus gallus] Length = 440 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 91/260 (35%), Gaps = 30/260 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GRQ R + ++ G C+V+ G T +L + E VP G + Sbjct: 23 RLDGRQCYDYRNVRISFGPE---HGCCVVELGKTRVLGQVS-CELVPPKPNRATEGILFC 78 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 + P + GRQ ++ R+I R LR +D +L G + QI Sbjct: 79 NLELSPMAAPG-----FEPGRQSELLVKVNRLIERCLRNSKCIDTESLCVVAGEKVWQIR 133 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------QLSQVLKGHVAA 163 +D ++ DG AA VAL + K + + Sbjct: 134 VDLHLLNHDGNIVDAASIAGIVALCHFRRPDVSVQGKEVTVYSPEERDPVPLSIHHMPIC 193 Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 +S Y +VD + E+ +D M I +Q S +D Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252 Query: 222 LAKDRIADLIKLQKDVISNE 241 + ++A++ +L + + N+ Sbjct: 253 ITAVKVAEITELIQKALEND 272 >gi|328948917|ref|YP_004366254.1| polyribonucleotide nucleotidyltransferase [Treponema succinifaciens DSM 2489] gi|328449241|gb|AEB14957.1| Polyribonucleotide nucleotidyltransferase [Treponema succinifaciens DSM 2489] Length = 696 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 87/246 (35%), Gaps = 18/246 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I+ V GS L G+T L TL +E+V I + Sbjct: 313 LRIDGRGTEDIRPITCEVNVLPRPHGSALFTRGETQSLAVTTLGTAMDEQVYDDIEGDRT 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G E G R + R+L ++ + I + Sbjct: 373 ENFILHYNFPPYSVG-----EVGKLTTGRREIGHGNLARRSLAPMIPSRSEFPYTIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 ++++++G + A+ G ++L M+ + + G Y I+ Sbjct: 428 EIMESNGSSSQASTCGGCLSLLAAGVPMKKMVAGIAMGLITDGP-------QYKKYAILS 480 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I Q + A S D L AK ++ + + Sbjct: 481 DILGEEDHLGDMDFKVAGTRDG-ITGFQMDIKIAGVSMDIMRRALEQAKRGRNHILDIME 539 Query: 236 DVISNE 241 IS Sbjct: 540 KCISKP 545 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 80/222 (36%), Gaps = 26/222 (11%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77 K A G + G T ++ T +V +T EY + G VKRE Sbjct: 23 KQANGCVYAQIGGTAVIATVCASSEV---KEGLDFVPVTVEYNEKFYAAGKIPGGFVKRE 79 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 GR + + R+I R +R + + S QI+ C I A+ + A+ Sbjct: 80 ---GRPKDKEILVSRLIDRPMRPLFETSFGREIQIVPTCVSIDGVNPPDILAVLASSAAV 136 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G VA + G L G I++ Y + I ++ T G Sbjct: 137 S-------------ISDIPFHGPVAGVRVGYLNGEYILNPTYEQMEKIQLEIVVAGTKDG 183 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 V+G A S++ L A+ I D+ LQ++++ Sbjct: 184 -FTMVEGGANE--VSEEVMLGALEKAQGFITDMCLLQEELVK 222 >gi|296329277|ref|ZP_06871778.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153633|gb|EFG94450.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 699 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RAL V+ I + + Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPTEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A +++L Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITKEIMRIALNQAHQARIQILEL 545 Query: 234 QKDVISNE 241 + IS Sbjct: 546 MNNTISKP 553 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 33/233 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +S+ + G+ ++++GDT LL+TA + + + G Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSSGKF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + + + I V+ D Sbjct: 74 P---GGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINI 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 + G+ +AL G VA++ G G I++ E Sbjct: 126 PDYLGVIGSSLAL-------------MISDIPFLGPVASVIVGYKNGEFILNPSPKELEE 172 Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D T ++VE A ++ + A + I + + Q++ Sbjct: 173 SELDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221 >gi|325142036|gb|EGC64468.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis 961-5945] gi|325197978|gb|ADY93434.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis G2136] Length = 706 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|325129928|gb|EGC52729.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis OX99.30304] Length = 706 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|319953765|ref|YP_004165032.1| polyribonucleotide nucleotidyltransferase [Cellulophaga algicola DSM 14237] gi|319422425|gb|ADV49534.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga algicola DSM 14237] Length = 747 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 26/233 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-------KVPMWIRN 53 +RL GR+ +++R I GS + G+T L T TL +P + Sbjct: 317 LRLDGRKTDEIRPIWCEIDYLPSTHGSAIFTRGETQALATVTLGTSRDANKIDMPSF--- 373 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 Y P TG S R+ G + R L+ ++ + Sbjct: 374 EGEENFYLHYNFPPFCTGEARPLRGTSRREVGHG----NLAQRGLKGMIPSD--CPYTVR 427 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A + +AL D M+ + + + G A+ Sbjct: 428 VVSEVLESNGSSSMATVCAGTMALMDAGVKMKRPVSGIAMGLISDGDRYAV--------- 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I Q + S + L A+D Sbjct: 479 LSDILGDEDHLGDMDFKVTGTSEG-ITACQMDIKIKGLSYEILVNALKQARDG 530 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 73/227 (32%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REIS+ K A GS +V+ G+ LL T + V + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGNCMLLCTVVSNYKQSDVDFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I ++ D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMI--QLMSHDENV-- 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + + + + + + ++ + G +++ + Sbjct: 126 ---------MPEAMAGLAASAAIQLSDFPFECAISEARVARVNGEFVINPTRA--QLAES 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D ++ S V + E S++ + A + I I Q Sbjct: 175 DLEMMIGASADSVMMV-EGEMDEISEEVMADAIKFAHEAIKVQIAAQ 220 >gi|268681650|ref|ZP_06148512.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID332] gi|268621934|gb|EEZ54334.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID332] Length = 707 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542 Query: 238 ISNE 241 ++ Sbjct: 543 VAGP 546 Score = 73.6 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT + T ++E + + T G +P Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 76 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 177 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 178 LVVAGTSKAVLM 189 >gi|254493246|ref|ZP_05106417.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae 1291] gi|268598511|ref|ZP_06132678.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae MS11] gi|268603169|ref|ZP_06137336.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID1] gi|268683877|ref|ZP_06150739.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-92-679] gi|226512286|gb|EEH61631.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae 1291] gi|268582642|gb|EEZ47318.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae MS11] gi|268587300|gb|EEZ51976.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID1] gi|268624161|gb|EEZ56561.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-92-679] Length = 707 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542 Query: 238 ISNE 241 ++ Sbjct: 543 VAGP 546 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT + T ++E + + T G +P Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 76 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 177 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 178 LVVAGTSKAVLM 189 >gi|221194578|ref|ZP_03567635.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC 49626] gi|221185482|gb|EEE17872.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC 49626] Length = 733 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 86/245 (35%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57 R+ GR +++R I + GS L + G T +L T + + I Sbjct: 319 RVDGRAADEIRPIMVKPDYLPLVHGSGLFQRGQTQVLSICTLGMLNEWQRLDTIEPVDGK 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + + R+ G + RAL V+ I + + Sbjct: 379 RYIHHYNFPPFCTGETGRMGSPKRREIGHG----ALAERALLPVIPSEDEFPYAIRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V++++G + A+ G+ +AL D + V+ ++ G++ Sbjct: 435 VMESNGSSSMASTCGSTLALMDAGVPLVR-------------PVSGVAMGLIQENGKTVV 481 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + + L A + ++ Sbjct: 482 LTDIQGLEDFLGDMDFKVTGTTKG-ITAMQMDNKATGLTPEILRQALMQAHEGRMFILNK 540 Query: 234 QKDVI 238 + I Sbjct: 541 MLEAI 545 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 80/220 (36%), Gaps = 27/220 (12%) Query: 22 KYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 K A G+C+VK GD+ +L + E K + G +P G +KREA Sbjct: 24 KQATGACVVKCGDSTVLLTAVVSKERKDYDFFPLTVDFIEKMYAVGRIP---GGYLKREA 80 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 R ++ I RMI R LR QI+ V T ++ GA ALH Sbjct: 81 ---RPSEKATLIARMIDRPLRPSFPEGFRNEVQIVATSLVADQINAVDTISVMGASAALH 137 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGM--LCGYPIVDLDYGEDSTIDVDANFVMTDS 196 +G +A + G G +V+ Y E D+D + S Sbjct: 138 -------------IGGVPYEGPLACVRIGRNSETGEFLVNPTYEERDHSDLDLE--LAGS 182 Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + + A S++ + + ++ IA + QK Sbjct: 183 ATFISM-LEAGAHEISEEDMLSAMAFGQEAIAAFCEEQKK 221 >gi|150388828|ref|YP_001318877.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470924|sp|A6TM00|PNP1_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 1; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1 gi|149948690|gb|ABR47218.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 702 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R R+ +++R IS + G+ L G+T +LT TL + + Sbjct: 311 IRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRDAQRIDGLGEEDE 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G S R+ G ++ RAL+ ++ I + Sbjct: 371 KRYMHHYNFPPYSVGETRFMRGPSRREIGHG----ALVERALKPMIPCKEDFPYAIRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V+ +G + A++ G+ ++L D +KG VA I+ G++ Sbjct: 427 EVLACNGSSSQASVCGSTLSLMDAGV-------------PIKGMVAGIAMGLIKEEGQIA 473 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T++G I +Q + A ++ L AK ++ Sbjct: 474 ILSDIQGMEDALGDMDLKVAGTENG-ITALQMDIKIAGIDRNIMETALAQAKIGRTHILN 532 Query: 233 LQKDVISNE 241 K+ I++ Sbjct: 533 KMKEAITSP 541 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 27/225 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + V++ A+GSC++K+GDT +L TA +E + + + + G + Sbjct: 12 RPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE+ R ++ R+I R +R + Q+I + D Sbjct: 72 P---GGFIKRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCPPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 +A+ G+ +AL + G A++S GM+ G IV+ + + Sbjct: 126 ISAMIGSSIALS-------------VSNIPFMGPTASVSVGMIDGEYIVNPTSEQKELSE 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 ++ T ++ ++ A ++ + A + I ++ Sbjct: 173 LELIVSGTKDA-VMMIEAGANE--LTEAQILDAIMFAHEEIKKIV 214 >gi|90409343|ref|ZP_01217432.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3] gi|90309551|gb|EAS37747.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3] Length = 700 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 28/248 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R + + V GS L G+T L TATL + I ++ G Sbjct: 314 RIDGRDPESVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P G + R+ G R+ R + +V+ DL + + Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGVLAVMPDLEEFP-YTVRVVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ GA +AL D LK VA I+ G++ Sbjct: 429 EITESNGSSSMASVCGASLALMDAGV-------------PLKASVAGIAMGLVKEGDEFV 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +++ LN AK ++ Sbjct: 476 VLSDILGDEDHLGDMDFKVAGTSEG-ITALQMDIKIEGITKEIMQIALNQAKAARLHILS 534 Query: 233 LQKDVISN 240 + + IS Sbjct: 535 VMDEAISE 542 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT + + +E+ + + T G +P Sbjct: 15 VTLETGVMARQATAAVMCSMDDTCVFVSVVGKQATDEERDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I I + Sbjct: 74 --GGFFKRE---GRPSEEETLISRLIDRPVRPLFPAGFKNEVQVIATVVSINPEINPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL G + G + G +++ E D Sbjct: 129 AMIATSAALS-------------ISGMPFNGPIGCARVGYIDGQYLLNPTKTELEAS--D 173 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N V++ + + V + S E S+D + + Q+ V+ + + Sbjct: 174 LNLVVSGTENAVLMVES-EAGILSEDVMLGAVVYGHE--------QQQVVVSAI 218 >gi|221640608|ref|YP_002526870.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides KD131] gi|254782733|sp|B9KP47|PNP_RHOSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221161389|gb|ACM02369.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides KD131] Length = 716 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I V GS L G+T L TL I + HG + Sbjct: 318 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP- 173 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGKWA 480 Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRMHILG 539 Query: 233 LQKDVISN 240 +S+ Sbjct: 540 EMSKALSS 547 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ V+ D Sbjct: 75 --GGFFKREA---RPSEKETLTSRLIDRPIRPLFVDGF--KNEVLLIVTVLSHDLVNEPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182 A+ A AL G + A G G +++ D + Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E S+ + + + +I + Sbjct: 175 ENPEQRLDLVIAGTKDAVMMVES-EAYELSEAEMLGAVKFGHEAMQPVIDM 224 >gi|325136018|gb|EGC58628.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M0579] gi|325202445|gb|ADY97899.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M01-240149] gi|325207803|gb|ADZ03255.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis NZ-05/33] Length = 706 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|237742790|ref|ZP_04573271.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 4_1_13] gi|256846116|ref|ZP_05551574.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_36A2] gi|229430438|gb|EEO40650.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 4_1_13] gi|256719675|gb|EEU33230.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_36A2] Length = 699 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPVPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RAL V+ I + + Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPSEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A + +++L Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILEL 545 Query: 234 QKDVISNE 241 + IS Sbjct: 546 MNNTISKP 553 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 29/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +S+ + G+ ++++GDT LL+TA + + + G Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKDARKGADFFPLTVDYIEKFYSSGKF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + + + I V+ D Sbjct: 74 P---GGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYD---- 121 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + + D L + G VA++ G G I++ E + Sbjct: 122 -------EINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 174 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++VE A ++ + A + I + + Q++ Sbjct: 175 LDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221 >gi|158421687|ref|YP_001522979.1| polynucleotide phosphorylase/polyadenylase [Azorhizobium caulinodans ORS 571] gi|158328576|dbj|BAF86061.1| polyribonucleotide nucleotidyltransferase [Azorhizobium caulinodans ORS 571] Length = 756 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I + A GS L G+T L ATL ++ G Sbjct: 349 IRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 408 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+ ++ + + Sbjct: 409 EHFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAKHEFPYTLRVVS 464 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G ++L D ++ + +L+G A+ + D Sbjct: 465 EILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAV---------LSD 515 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+SG + +Q + A +++ L AKD A ++ Sbjct: 516 ILGDEDHLGDMDFKVAGTESG-VTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEMSK 574 Query: 237 VISN 240 +++ Sbjct: 575 ALTS 578 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 75/236 (31%), Gaps = 38/236 (16%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L + A+G+ +GDT +L T + + + T G + Sbjct: 46 RTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLTVNYQEKTYAAGRI 105 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+++ + Sbjct: 106 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAHDLENDPD 159 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ A AL G + G + +++ E Sbjct: 160 VLSMVAASAAL-------------TLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSA 206 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229 +D T S ++ V+ A+ + F HF ++ LA+ + Sbjct: 207 LDLVVAGT-SDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKE 261 >gi|257867115|ref|ZP_05646768.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC30] gi|257877194|ref|ZP_05656847.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC20] gi|257801171|gb|EEV30101.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC30] gi|257811360|gb|EEV40180.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC20] Length = 720 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GRQ +++R ++ + GS L G T L+ T E ++ + + Sbjct: 333 IRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 392 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 393 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPDETDFPYTIRLVA 448 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 449 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 495 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK +++ Sbjct: 496 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILN 554 Query: 233 LQKDVIS 239 ++ Sbjct: 555 ELTSTLA 561 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + + ++K A G+ LV++GDT +L+ A ++T +T Y + Sbjct: 29 RPLEVEVGQLAKQANGAVLVRYGDTVVLSAAV----ASKEAKDTDFFPLTINYEEKMYAV 84 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 85 GKVPGGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCTPA 141 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +AL G +A + G + G +++ + D Sbjct: 142 MAAMLGSSLALS-------------ISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTD 188 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ++ T I V+ A+ S++ L D I +L+ Q++V++ Sbjct: 189 IELTVAGTKKA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEVVA 238 >gi|77165581|ref|YP_344106.1| polynucleotide phosphorylase/polyadenylase [Nitrosococcus oceani ATCC 19707] gi|254433639|ref|ZP_05047147.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27] gi|123593842|sp|Q3J9C0|PNP_NITOC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|76883895|gb|ABA58576.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus oceani ATCC 19707] gi|207089972|gb|EDZ67243.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27] Length = 695 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I+++ + GS L G+T L TL + I + Sbjct: 315 RIDGRDATAIRPINISTGLLPRTHGSALFTRGETQSLVATTLGTERDAQVIDAIEGERRE 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R+L VV I + + Sbjct: 375 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRSLNGVVPDEESFPYVIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A + G ++L D +K VA I+ G++ Sbjct: 431 ITESNGSSSMATVCGTSLSLMDAGV-------------PIKAPVAGIAMGLIKEKDRFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L+ A++ +++ Sbjct: 478 LSDILGDEDHLGDMDFKVAGTEKG-ITALQMDIKIDGITEEIMRTALSQAREGRFYILQK 536 Query: 234 QKDVISNE 241 ++IS Sbjct: 537 MNEIISTP 544 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 85/235 (36%), Gaps = 28/235 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A G+ +V++G+T +L T E + + T G + Sbjct: 13 RSLVLETGCIARQASGAVVVRYGETVVLVTVVGMKEAAEGRDFFPLTVNYQERTYAAGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R LR + + + Q+I ++ Sbjct: 73 P---GGFFKRE---GRPTEKETLTSRLIDRPLRPLFPKNFINEVQVIATVISSDSENDPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ GA AL +AA G + G +++ G+ Sbjct: 127 IPSLIGASAALALSGI-------------PFTTPIAAARVGYIDGQYVLNPTLGQMEKSA 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 +D T+ ++ +E ++ + A + +I+ ++ ++ E Sbjct: 174 LDLVVAGTEKAVLMV---ESEAQELPEEIMLGSVMFAHQEMQVVIQAIRE-LAEE 224 >gi|240016088|ref|ZP_04722628.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae FA6140] Length = 706 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT + T ++E + + G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERNYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|327441005|dbj|BAK17370.1| polyribonucleotide nucleotidyltransferase [Solibacillus silvestris StLB046] Length = 704 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+++++R +S + A GS L G T L T A + ++ + + Sbjct: 314 VRPDGRKQDEIRPLSSEVDLLPRAHGSALFTRGQTQALSICTLGALGDVQIIDGLGIEES 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RA+ +V+ I Sbjct: 374 KRWMHHYNFPQFSVGETGR----YGSPGRREIGHGALGERAILAVMPTEEEFPYAIRCVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +AL +K VA I+ G++ Sbjct: 430 EVLESNGSTSQASICASTMALMAAGV-------------PIKAPVAGIAMGLVKKGEHYT 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S+D L AK +++ Sbjct: 477 VLSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRDILEEALTQAKIGRMHILE 535 Query: 233 LQKDVIS 239 IS Sbjct: 536 HMMSTIS 542 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 88/234 (37%), Gaps = 28/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ ++++G+T +L TAT+ + + + G +P Sbjct: 14 RPLTVEVGQLAKQANGAAMIRYGETAVLATATMSKQPKALDFFPLTVNFEERLYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q I+ ++ Sbjct: 74 ---GGFIKRE---GRPSEAAVLTSRLIDRPIRPMFPDGFRNEVQSILMVMSNDSNCPADV 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ ++L G +A + G + G +V+ + + V Sbjct: 128 AAMFGSSLSLA-------------ISDIPFDGPIAGVHVGYIEGEFVVNPTVEQSAKSTV 174 Query: 188 DANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++VE A ++D + + I LI Q+ +++ Sbjct: 175 HLTVAGNKDAVNMVE----AGALEVTEDIMLEAIMFGHEEIKKLIAFQEQIVAE 224 >gi|159045537|ref|YP_001534331.1| polynucleotide phosphorylase/polyadenylase [Dinoroseobacter shibae DFL 12] gi|187610298|sp|A8LKE7|PNP_DINSH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157913297|gb|ABV94730.1| polyribonucleotide nucleotidyltransferase [Dinoroseobacter shibae DFL 12] Length = 711 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + +R I + GS L G+T L TL + HG + Sbjct: 318 RIDGRALDTVRPIQSEVGILPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGSYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I +Q + A + + L AK ++ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTEEG-ITSLQMDIKVAGITPEIMEKALEQAKAGRLHILG 539 Query: 233 LQKDVISN 240 +S Sbjct: 540 EMSKALSE 547 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A+G + +G+T ++ T + + + G +P Sbjct: 16 LTLETGKIARQADGCVIATYGETSVMAAVTYARSQKPGQDFFPLTVHYNEKYYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVDGF--KNEVLVICTVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----PIVDLDYGED 182 A+ A AL G +A G G P+VD + Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAGARVGYEDGEYVLNPVVDDMHDLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D + V+ + V + S E S+ + +++ +I L Sbjct: 175 NNPDQRLDLVVAGTKDAVMMVES-EAYELSEAEMLGAVKFGHEQMQPVIDL 224 >gi|30021896|ref|NP_833527.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC 14579] gi|81433861|sp|Q819Z1|PNP_BACCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29897452|gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 14579] Length = 712 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 86/235 (36%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIID 115 Y S G R+ G IG RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG-----AIGERALEPVIPSEKDFPYTVRLV 429 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 430 SEVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHY 476 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + S++ L AK Sbjct: 477 TILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|84684402|ref|ZP_01012303.1| polyribonucleotide nucleotidyltransferase [Maritimibacter alkaliphilus HTCC2654] gi|84667381|gb|EAQ13850.1| polyribonucleotide nucleotidyltransferase [Rhodobacterales bacterium HTCC2654] Length = 716 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 95/247 (38%), Gaps = 27/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +Q+R I + GS L G+T L TL + + G Sbjct: 318 RIDGRALDQVRPILAEVGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALTGTYKS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172 + +++G + A++ G +++ D + LK VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------AVPLKAPVAGVAMGLVLEDDGSYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRMHILG 539 Query: 233 LQKDVIS 239 +S Sbjct: 540 EMNKALS 546 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 80/231 (34%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+G+ + G+T ++ T +E + + G +P Sbjct: 16 LTLETGKVARQADGTVIATLGETSVMANVTFAKQQKEGQDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPIRPLFVEGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182 A+ A AL G +A G G +++ + Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAGARVGYEDGEYVLNPTCDDMHDLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D + V+ + V + S E ++ + A ++I +I L Sbjct: 175 NNPDQRLDLVVAGTKDAVMMVES-EAYELTEAEMLGAVTFAHEQIQPVIDL 224 >gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49] gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49] gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1] Length = 303 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 82/232 (35%), Gaps = 20/232 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +MR + + A GS V G T L G I Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHAS-QDRGSINL 105 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P +T ++A S R + + ++ +AL +VV L I + V++ Sbjct: 106 EFRFAPFAT---TGKDACSER---DTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGG +AA+T +AL D M D GH + + ++D D E Sbjct: 160 DGGLISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCV----LLDPD-AE 214 Query: 182 DSTIDVDANFVMTDSGH------IVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + D N D G+ + + S + + ML L + Sbjct: 215 ERRAFADKNCTFVDLGYCPALASVCFIHASG--TLLATESGEQMLRLCEAAC 264 >gi|254428432|ref|ZP_05042139.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881] gi|196194601|gb|EDX89560.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881] Length = 697 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R I GS L G+T + TATL + + Sbjct: 316 RIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGMRDAQFIDALEGSHQD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y P G + R+ G R+ R + +VV + + + Sbjct: 376 HFMLQYNFPPYCVGETGFIGSPKRREIGHG----RLARRGVEAVVPSVQDFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +AL D L VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSMALMDAGV-------------PLTAPVAGIAMGLVKEEDGRFA 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ LN A ++ Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTARG-VTALQMDIKIEGITEEIMEKALNQANAGRLHILG 537 Query: 233 LQKDVISN 240 IS Sbjct: 538 EMNKAISE 545 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L +++ A + +V+ GDT +L T ++ + +T Y +TG Sbjct: 16 VTLETGQIARQATAAVMVRIGDTEVLVTVVGRKEADP---SKNFFPLTVNYQEKTYATGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 +KRE GR + R+I R +R + + Q++ + A Sbjct: 73 IPGGFLKRE---GRPSEKETLTCRLIDRPIRPLFPNGFMNEVQVVATVMSSDKNRDPDIA 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G G I++ Y E + +D Sbjct: 130 ALIGTSAALSISGI-------------PFNGPIGAARVGYKDGMYILNPSYSELAESALD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+ ++ +E S+D + + LI+ K+ Sbjct: 177 LVVAGTEPAVLMV---ESEAQELSEDQMLGAVLFGHMEMQPLIQGIKE 221 >gi|293400548|ref|ZP_06644693.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305574|gb|EFE46818.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 738 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 92/251 (36%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56 +R GR+ +++R + + GS L G+T +L+ TL I + ++ Sbjct: 322 VRPDGRKIDEIRPLDSQVDILPRVHGSALFTRGETQVLSVTTLGPMNDNQIIDDVTDVEY 381 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + RAL V+ I Sbjct: 382 KRFMHHYNFPPYSVGETGR----MGNPGRREIGHGALGERALSQVLPSEEEFPYTIRTVA 437 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I ++L +K VA I+ G++ Sbjct: 438 EVLESNGSSSQASICAGTMSLMAAGV-------------PIKAPVAGIAMGLIMDEDSGK 484 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G I +Q + A ++D F L+ AK A + Sbjct: 485 YTVLTDIQGMEDHFGDMDFKVAGTSEG-ITALQMDIKVAGITEDVFREALSQAKGARAQI 543 Query: 231 IKLQKDVISNE 241 ++ I Sbjct: 544 LENMMTAIDKP 554 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 29/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +++ V+K A GS LV++ DT +L+TAT +E + + G + Sbjct: 16 RVLTVETGEVAKQAGGSALVRYNDTVVLSTATASKQAKEGIDFFPLTVSFEEKLYSVGKI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR + RMI R +R + Q++ + + Sbjct: 76 P---GGFLRRE---GRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQECTPE 129 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +AL G +A + G + G +++ + D Sbjct: 130 MTAMFGASLALC-------------VSDIPFNGPIAGVIVGRVDGEYVINPTPEQLEKSD 176 Query: 187 VDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + T + ++VE A +D + + I L+ Q++ Sbjct: 177 IHLTVAGTKYAVNMVE----AGAKEVDEDAMLGAIMFGHEHIKKLVAFQEE 223 >gi|218767879|ref|YP_002342391.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis Z2491] gi|187610303|sp|A1IR09|PNP_NEIMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|121051887|emb|CAM08193.1| putative polyribonucleotide nucleotidyltransferase [Neisseria meningitidis Z2491] gi|319410126|emb|CBY90462.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase; PNPase; CAP87K) [Neisseria meningitidis WUE 2594] Length = 706 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|187610326|sp|A1B5P9|PNP_PARDP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 715 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I GS L G+T L TL I + HG + Sbjct: 318 RIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNSRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGRWA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRLHILG 539 Query: 233 LQKDVISN 240 +S Sbjct: 540 EMSKALSE 547 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 35/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + +++ C V+ D Sbjct: 75 --GGFFKREA---RPSEKETLTARLIDRPIRPLFVPGFKHE--VLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST-- 184 A+ A AL G +AA G G +++ + +D Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAAARVGFADGEYVLNPE-VQDMDHL 173 Query: 185 ---IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E ++ + + + +I L Sbjct: 174 RLNPEQRLDLVVAGTRDAVMMVES-EAYELTEAEMLGAVKFGHEAMQPVIDL 224 >gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa] gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa] Length = 730 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 89/238 (37%), Gaps = 17/238 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56 R GR +++R I + A GS L G+T L TL +K V + + Sbjct: 380 RSDGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 439 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G ++ RAL+ ++ + ++ Sbjct: 440 KRFYLQYLFPPSCVGEVGRIGAPSRREIGHGM----LVERALKPILPSDDDFPYTVRVES 495 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 + +++G + A++ G +AL D ++ + G V G P++ Sbjct: 496 TITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAM-----GMVLDTEEFGGDGTPLIL 550 Query: 176 -DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D+ ED++ D+D + G I Q + + L A+D ++ Sbjct: 551 SDITGSEDASGDMDFKVAGNEDG-ITAFQMDIKVGGITLPVMRKALLQARDGRQHILA 607 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 27/224 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPR 68 R I + + A GS V G+T + T+ L++ VP + + R Sbjct: 30 RHILVETGHIGRQASGSVTVTDGETIVYTSVCLDD-VPSEPSDFYPLSVNYQERFSAAGR 88 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 ++G KRE G+ I R+I R LR + QI+ V+ DG Sbjct: 89 TSGGFFKRE---GKLKDHEVLICRLIDRPLRPTMFKGFYHETQIL--SWVLSYDGLHSPD 143 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + A+T A +A+ +A + G++ IV+ E + Sbjct: 144 SLAVTAAGIAVA-------------LSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESE 190 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +D TDS I ++G +++ + + +D + + Sbjct: 191 LDLLLAGTDSA-IFMIEG--YCNFLTEEKLLDAVQIGQDAVRAI 231 >gi|194098066|ref|YP_002001114.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae NCCP11945] gi|239998524|ref|ZP_04718448.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae 35/02] gi|240013649|ref|ZP_04720562.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae DGI18] gi|240080230|ref|ZP_04724773.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae FA19] gi|240115183|ref|ZP_04729245.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID18] gi|240127729|ref|ZP_04740390.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-93-1035] gi|260440999|ref|ZP_05794815.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae DGI2] gi|226702668|sp|B4RK29|PNP_NEIG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193933356|gb|ACF29180.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae NCCP11945] gi|317163799|gb|ADV07340.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae TCDC-NG08107] Length = 706 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT + T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|296114408|ref|ZP_06833062.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter hansenii ATCC 23769] gi|295979169|gb|EFG85893.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter hansenii ATCC 23769] Length = 710 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + A GS L G+T L ATL + + G Sbjct: 312 RIDGRDLKTIRPIVSEVGILPRAHGSALFTRGETQALVIATLGTGQDEQVIDALEGEYRT 371 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R GR R ++ RA+ ++ + + + Sbjct: 372 NFMLHYNFPPFSVGE-CGRMGSPGR---REIGHGKLAWRAIHPLLPGKDTFPYTMRVVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A + G +AL D LK VA I+ G++ Sbjct: 428 ITESNGSSSMATVCGTSLALMDAGV-------------PLKRPVAGIAMGLIKEEEEFAV 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + + + + L+ A+ ++ Sbjct: 475 LSDILGDEDHLGDMDFKVAGTENG-ITALQMDIKITSITPEIMEIALDQARGGRMHILGE 533 Query: 234 QKDVISN 240 ++ Sbjct: 534 MSKALTE 540 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 78/227 (34%), Gaps = 27/227 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ +V +GDT +L TA +++ + + G + Sbjct: 14 RPLILETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKAYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R+I R +R + + Q++ + Sbjct: 74 P---GGFFKRE---GRPSEAEVLNSRLIDRPIRPLFPDNFRNEVQVVATVLSHDMENDPA 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G AL G V A G + G +++ + Sbjct: 128 IVALIGCSAAL-------------TLSGVPFFGPVGACRVGYIDGKYVLNPTIAQTKESA 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T+ G ++ +E A S+ + + D+I Sbjct: 175 LDLVVAGTEEGVLMV---ESEAAELSEKVMLGAVTFGHEAFQDVIDA 218 >gi|313623917|gb|EFR94027.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL J1-023] Length = 723 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L AK+ +++ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQIXXXXLTQAKEGRLHILE 537 Query: 233 LQKDVISNE 241 IS Sbjct: 538 HLTSTISEP 546 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL +G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum] Length = 897 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 33/245 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56 R GR ++R I+ + + A GS L G+T L ATL + ++ I + Sbjct: 444 RSDGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRINNLIEVDDY 503 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G + R+L +++ I ++ Sbjct: 504 KRFYLQYSFPPSCVGEAGRIGAPSRREIGHGM----LAERSLETILPSDNDFPYTIRVES 559 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 + +++G + A++ G +AL D +K +A I+ G++ Sbjct: 560 TITESNGSSSMASVCGGCLALQDAGV-------------PIKCSIAGIAMGLVLDTKEFG 606 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D + G I Q + A + L A+D Sbjct: 607 GDGTPLILSDITGSEDASGDMDFKVAGNEDG-ITAFQMDIKVAGITLPIMREALLQARDG 665 Query: 227 IADLI 231 ++ Sbjct: 666 RKHIL 670 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 79/226 (34%), Gaps = 31/226 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + + A GS V G+T + TT T E + + + + Sbjct: 96 RHTLVETGHMGRQASGSVTVTDGETIVYTTVCLNDTPSEPSDFFPLSVNYQE---RFSAA 152 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG-- 124 R++G KRE G+ I R+I R LR + QI+ V+ DG Sbjct: 153 GRTSGGFFKRE---GKTKDHEVLICRLIDRPLRPTMPKGFYHETQIL--SWVLSYDGSHA 207 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AIT A +AL VA + G++ IV+ E Sbjct: 208 PDALAITAAGIALA-------------LSEIPTSKAVAGVRVGLIGDKYIVNPTAEEMEN 254 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 ++D TDS I+ ++G ++ + + +D + + Sbjct: 255 SELDLMLAGTDSA-ILMIEGYG--NFLPEEKLLKAVEVGQDAVRAI 297 >gi|71083097|ref|YP_265816.1| polynucleotide phosphorylase/polyadenylase [Candidatus Pelagibacter ubique HTCC1062] gi|123734390|sp|Q4FNM6|PNP_PELUB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71062210|gb|AAZ21213.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter ubique HTCC1062] Length = 690 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 27/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V GS L G+T + TL +E+ + Sbjct: 313 RIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDDEQRLESLDGQHRE 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R R+ G ++ RA+ S + I + Sbjct: 373 RFMLHYNFPPFSVGE-TGRIGTGRREVGHG----KLAWRAINSSLPPKEEFPYTFRIVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 428 ITESNGSSSMASVCGASLALMDAGV-------------PIKEPVAGIAMGLIKEGDDFSV 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + + L AK+ ++ Sbjct: 475 LSDILGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFEIMEQALKQAKEGRIHILGE 533 Query: 234 QKDVISN 240 +S Sbjct: 534 MNKALSE 540 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 34/236 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 +ISL V++ A+G+ + G+T +L T +KV + + + G +P Sbjct: 15 KISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLSVNYQEKYYAGGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA R Q I R+I R +R + Q++ D Sbjct: 75 ---GGYFKREA---RPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISYDKDNQPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AIT + AL G V A G++ G I++ E + Sbjct: 129 LAITASSAALA-------------ISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQKD 236 D T ++ +E + +++ + + I +L K + Sbjct: 176 DLVVAGTKDAVLMV---ESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRK 228 >gi|59800780|ref|YP_207492.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae FA 1090] gi|240120719|ref|ZP_04733681.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID24-1] gi|268594384|ref|ZP_06128551.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae 35/02] gi|268596381|ref|ZP_06130548.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae FA19] gi|268600863|ref|ZP_06135030.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID18] gi|268686120|ref|ZP_06152982.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-93-1035] gi|291044327|ref|ZP_06570036.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae DGI2] gi|293399517|ref|ZP_06643670.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae F62] gi|75356328|sp|Q5F9Q7|PNP_NEIG1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|59717675|gb|AAW89080.1| putative polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae FA 1090] gi|268547773|gb|EEZ43191.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae 35/02] gi|268550169|gb|EEZ45188.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae FA19] gi|268584994|gb|EEZ49670.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae PID18] gi|268626404|gb|EEZ58804.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae SK-93-1035] gi|291011221|gb|EFE03217.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae DGI2] gi|291610086|gb|EFF39208.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae F62] Length = 707 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542 Query: 238 ISNE 241 ++ Sbjct: 543 VAGP 546 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT + T ++E + + T G +P Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 76 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 177 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 178 LVVAGTSKAVLM 189 >gi|255994504|ref|ZP_05427639.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum ATCC 49989] gi|255993217|gb|EEU03306.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum ATCC 49989] Length = 696 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 13/230 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R R+ ++R I + A GS L K G+T +L+ AT + +V I Sbjct: 315 IRPDDRKRTEVRPIWCDTSILPRAHGSGLFKRGETQVLSAATLGGIGDAQVIDGIGVETE 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G + RAL V+ I + Sbjct: 375 KRYMHHYNFPPYSVGEARPIRSPGRREIGHG----ALAERALLPVLPSKEDFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 DV+ ++G T A++ G+ +AL D ++ + + + S + + D Sbjct: 431 DVLSSNGSTSQASVCGSCMALMDAGVPIKAPVAGIAMGLIERVEEDGNSKMAI----LSD 486 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED D+D T G I +Q + S++ L A++ Sbjct: 487 IQGLEDFLGDMDFKVAGTKEG-ITAIQMDIKVHGLSKEVLSQALEQAREG 535 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 88/235 (37%), Gaps = 31/235 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66 R + + V + A G +VK+GDT + TAT EK + + + G + Sbjct: 16 RLLEVEIGKVCEKANGQAMVKYGDTVVNVTATASEKPRADIDFFPLSVDFEERMYAAGKI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR ++ R+I R +R + Q++ I D Sbjct: 76 P---GGFIRRE---GRPSEKAILTSRLIDRPIRPLFPKGFYNDVQVVCTAMSIDPDCTPE 129 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + A+ G+ +AL G A++ G + G +V+ + + + Sbjct: 130 SVAMIGSSIAL-------------TISDIPWDGPTASVVIGYIDGNYVVNPTQEQRAVSE 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKDV 237 + T I+ V+ A S + A ++I ++ +Q++V Sbjct: 177 LHLVVSGTKDA-IMMVEAGANEVKESV--MLEAILFAHEQIKQIVSFIEDIQREV 228 >gi|91762476|ref|ZP_01264441.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter ubique HTCC1002] gi|91718278|gb|EAS84928.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter ubique HTCC1002] Length = 690 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 27/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I V GS L G+T + TL +E+ + Sbjct: 313 RIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDDEQRLESLDGQHRE 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R R+ G ++ RA+ S + I + Sbjct: 373 RFMLHYNFPPFSVGE-TGRIGTGRREVGHG----KLAWRAINSSLPPKEEFPYTFRIVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 428 ITESNGSSSMASVCGASLALMDAGV-------------PIKEPVAGIAMGLIKEGDDFSV 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + + L AK+ ++ Sbjct: 475 LSDILGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFEIMEQALKQAKEGRIHILGE 533 Query: 234 QKDVISN 240 +S Sbjct: 534 MNKALSE 540 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 34/236 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 +ISL V++ A+G+ + G+T +L T +KV + + + G +P Sbjct: 15 KISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLSVNYQEKYYAGGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA R Q I R+I R +R + Q++ D Sbjct: 75 ---GGYFKREA---RPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISYDKDNQPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AIT + AL G V A G++ G I++ E + Sbjct: 129 LAITASSAALA-------------ISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQKD 236 D T ++ +E + +++ + + I +L K + Sbjct: 176 DLVVAGTKDAVLMV---ESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRK 228 >gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134] gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134] Length = 712 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G QG R + RAL V+ + + Sbjct: 375 KRFMHHYNFPSFSVGETR----PMRGQGRREIGHGALGERALEPVIPSEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I G+ +A+ D LK VA I+ G++ Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + S++ L AK Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530 Score = 92.1 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R++++ ++K A G+ LV++GDT +L TA+ E K V + + G +P Sbjct: 15 RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + D+ Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A++ ++ + D I LI Q++++ Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223 >gi|257873450|ref|ZP_05653103.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC10] gi|257807614|gb|EEV36436.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus EC10] Length = 705 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GRQ +++R ++ + GS L G T L+ T E ++ + + Sbjct: 318 IRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPDETDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK +++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILN 539 Query: 233 LQKDVIS 239 ++ Sbjct: 540 ELTSTLA 546 Score = 92.8 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + + ++K A G+ LV++GDT +L+ A ++T +T Y + Sbjct: 14 RPLEVEVGQLAKQANGAVLVRYGDTVVLSAAV----ASKEAKDTDFFPLTINYEEKMYAV 69 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 70 GKVPGGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCTPA 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +AL G +A + G + G +++ + D Sbjct: 127 MAAMLGSSLALS-------------ISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ++ T I V+ A+ S++ L D I +L+ Q++V++ Sbjct: 174 IELTVAGTKKA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEVVA 223 >gi|257126208|ref|YP_003164322.1| polynucleotide phosphorylase/polyadenylase [Leptotrichia buccalis C-1013-b] gi|257050147|gb|ACV39331.1| Polyribonucleotide nucleotidyltransferase [Leptotrichia buccalis C-1013-b] Length = 700 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GRQ ++R I + GS L G+T L ATL +E++ + + Sbjct: 321 RADGRQTTEIRPIDVEIDTLPVPHGSALFTRGETQALVVATLGSKEDEQIIDGMEDETRK 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G A R+ G + RAL+ V+ + + + Sbjct: 381 KFFLHYNFPPYSVGEAGFMRAPGRRELGHG----NLAERALKYVMPEQDKFPYTVRLVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL +K VA I+ G++ Sbjct: 437 ITESNGSSSQASICGGSLALMAAGV-------------PIKSTVAGIAMGLIKEGDTFTV 483 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A + +I Sbjct: 484 LTDIQGLEDHLGDMDFKVAGTKDG-ITAIQMDIKIEGITREIMEIALRQALEGRLFIIDK 542 Query: 234 QKDVISNE 241 + VIS Sbjct: 543 MEAVISEP 550 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 31/235 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +I ++ +++ A GS +V+ G T LL TAT + E + + G P Sbjct: 15 KIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLTVDYIEKFYASGKFP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G +KRE + G I R+I R +R + L + I V+ D Sbjct: 75 ---GGFIKRET---KPGTDEVLISRLIDRPIRPLFPEGFL--NAVHIVVTVLSYDEVNYP 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI G AL G VA ++ G + G I++ + Sbjct: 127 ENLAIIGVSAAL-------------GLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLES 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ + T + V+ A+ S++ + ++I ++ Q + Sbjct: 174 EIQLSVAGTKDA-VTMVEAGAKE--VSEEVMLEAIMFGHEKIKEICAEQDKFLEQ 225 >gi|269213998|ref|ZP_05983355.2| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC 14685] gi|269144760|gb|EEZ71178.1| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC 14685] Length = 707 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L + A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542 Query: 238 ISNE 241 ++ Sbjct: 543 VAGP 546 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 76 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 178 LVVAGTSKAVLM 189 >gi|82750875|ref|YP_416616.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus RF122] gi|117940113|sp|Q2YXP2|PNP_STAAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|82656406|emb|CAI80825.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus RF122] Length = 698 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R++ + GS L G T L+ A + ++ + + Sbjct: 318 IRPDGRKPDEIRQLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL+ ++ +A I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I G+ +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + +++ L A+ +++ Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539 Query: 233 LQKDVISNE 241 I Sbjct: 540 HMLQTIDQP 548 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D + Sbjct: 75 ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+ ++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223 >gi|241758689|ref|ZP_04756802.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens SK114] gi|241320897|gb|EER57110.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens SK114] Length = 706 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L + A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|187471094|sp|A8IGA3|PNP_AZOC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 724 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I + A GS L G+T L ATL ++ G Sbjct: 317 IRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+ ++ + + Sbjct: 377 EHFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAKHEFPYTLRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G ++L D ++ + +L+G A+ + D Sbjct: 433 EILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+SG + +Q + A +++ L AKD A ++ Sbjct: 484 ILGDEDHLGDMDFKVAGTESG-VTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEMSK 542 Query: 237 VISN 240 +++ Sbjct: 543 ALTS 546 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 75/236 (31%), Gaps = 38/236 (16%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L + A+G+ +GDT +L T + + + T G + Sbjct: 14 RTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLTVNYQEKTYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+++ + Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ A AL G + G + +++ E Sbjct: 128 VLSMVAASAAL-------------TLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSA 174 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229 +D T S ++ V+ A+ + F HF ++ LA+ + Sbjct: 175 LDLVVAGT-SDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKE 229 >gi|294784756|ref|ZP_06750044.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_27] gi|294486470|gb|EFG33832.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 3_1_27] Length = 699 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RAL V+ I + + Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPSEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A + +++L Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILEL 545 Query: 234 QKDVISNE 241 + IS Sbjct: 546 MNNTISKP 553 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 89/236 (37%), Gaps = 39/236 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 R + ++ +S+ + G+ ++++GDT LL+TA + + + +T +Y Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTA---NRSKEARKGSDFFPLTVDYIEKFYSS 70 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD- 122 G P G KRE GR + + R+I R +R + + + I V+ D Sbjct: 71 GKFP---GGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDE 122 Query: 123 -GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 + G+ +AL G VA++ G G I++ E Sbjct: 123 INIPDYLGVIGSSLAL-------------MISDIPFLGPVASVIVGYKNGEFILNPSPKE 169 Query: 182 DSTIDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D T ++VE A ++ + A + I + + Q++ Sbjct: 170 LEESELDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221 >gi|86747731|ref|YP_484227.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris HaA2] gi|123099194|sp|Q2J2J4|PNP_RHOP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|86570759|gb|ABD05316.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris HaA2] Length = 718 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I V A GS L G+T L TL ++ G Sbjct: 316 RIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+R V+ I + + Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIRPVLPPHHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + A +++ L AKD ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 38/236 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T +L T T E V + T G + Sbjct: 14 RPLKLETGKVARQADGAVVATYGETIVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL KG + A G + +++ E Sbjct: 128 ILAMVAASAALTLSGA-------------PFKGPIGAARVGFINDEYVLNPVLDEMPETQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHF----FAMLNLAKDRIAD 229 ++ T ++ V+ A+ + F HF A++ LA+ + Sbjct: 175 LELVVAGTADA-VLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKE 229 >gi|119385483|ref|YP_916539.1| polynucleotide phosphorylase/polyadenylase [Paracoccus denitrificans PD1222] gi|119375250|gb|ABL70843.1| 3' exoribonuclease [Paracoccus denitrificans PD1222] Length = 736 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I GS L G+T L TL I + HG + Sbjct: 339 RIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNSRS 398 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 399 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 454 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 455 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGRWA 501 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 502 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRLHILG 560 Query: 233 LQKDVISN 240 +S Sbjct: 561 EMSKALSE 568 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 35/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 37 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKIP- 95 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + +++ C V+ D Sbjct: 96 --GGFFKREA---RPSEKETLTARLIDRPIRPLFVPGFKHE--VLVMCTVLSHDLVNDPD 148 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST-- 184 A+ A AL G +AA G G +++ + +D Sbjct: 149 IVAMIAASAAL-------------TISGVPFMGPIAAARVGFADGEYVLNPE-VQDMDHL 194 Query: 185 ---IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E ++ + + + +I L Sbjct: 195 RLNPEQRLDLVVAGTRDAVMMVES-EAYELTEAEMLGAVKFGHEAMQPVIDL 245 >gi|34763065|ref|ZP_00144038.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887264|gb|EAA24362.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 699 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RAL V+ I + + Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPSEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A + +++L Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILEL 545 Query: 234 QKDVISNE 241 + IS Sbjct: 546 MNNTISKP 553 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 33/233 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + ++ +S+ + G+ ++++GDT LL+TA + + + G Sbjct: 14 RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSSGKF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + + + I V+ D Sbjct: 74 P---GGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINI 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 + G+ +AL G VA++ G G I++ E Sbjct: 126 PDYLGVIGSSLAL-------------MISDIPFLGPVASVIVGYKNGEFILNPSPKELEE 172 Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D T ++VE A ++ + A + I + + Q++ Sbjct: 173 SELDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221 >gi|326388041|ref|ZP_08209645.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium nitrogenifigens DSM 19370] gi|326207542|gb|EGD58355.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium nitrogenifigens DSM 19370] Length = 763 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57 R+ GR Q+R I GS L G+T + T TL E++ + + Sbjct: 314 RIDGRTVTQVRPIESIVGFLPRTHGSALFTRGETQTICTTTLGTKDAEQMIDGLDGLTYQ 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G ++ RAL V+ I + D Sbjct: 374 RFMLHYNFPPYSVGEVGRFGAPGRREIGHG----KLAWRALNPVLPSKEDFPYTIRVLSD 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V +++G + A + G ++L D + + + +L+G + D+ Sbjct: 430 VTESNGSSSMATVCGGCLSLMDAGVPILRPVSGIAMGLILEGD---------DFTVLSDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ F L AK A ++ Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITSLQMDIKVAGITEEIFRTALAQAKGGRAHILGEMTRA 539 Query: 238 ISN 240 + Sbjct: 540 LGE 542 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++L +++ A+G+ L +G+T +L T + V +T Y S Sbjct: 16 LTLETGRIARQADGAVLATYGETVVLCAVTAAKSV---KEGQDFFPLTVHYQ-EKFSAAG 71 Query: 73 RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TA 128 R+ +G +E + R+I R +R + I + V+ DG T Sbjct: 72 RIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNE--INVIAQVMSYDGETEPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ A AL G + A G G ++ + + + +D Sbjct: 130 AMIAASAAL-------------TISGVPFLGPIGAARVGFKDGEYQLNPNMAQVAEGRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA----KDRIADLIKLQKDV 237 TD+ ++ V+ +E ++D + A + I +I+L + Sbjct: 177 LVVAATDTA-VMMVE--SEAKELTEDEMLGAVMFAHAESRKVIGAIIELAEKA 226 >gi|284799739|ref|ZP_05984737.2| polyribonucleotide nucleotidyltransferase [Neisseria subflava NJ9703] gi|284797006|gb|EFC52353.1| polyribonucleotide nucleotidyltransferase [Neisseria subflava NJ9703] Length = 707 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L + A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542 Query: 238 ISNE 241 ++ Sbjct: 543 VAGP 546 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 76 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G I++ E + +D Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYILNPTKAELAKSQLD 177 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 178 LVVAGTSKAVLM 189 >gi|254303468|ref|ZP_04970826.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323660|gb|EDK88910.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 699 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR ++R + V GS L G+T L TL K + + + Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RAL V+ I + + Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPSEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + +++ LN A + +++L Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILEL 545 Query: 234 QKDVISNE 241 + IS Sbjct: 546 MNNTISKP 553 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 87/231 (37%), Gaps = 29/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + ++ +S+ + G+ ++++GDT LL+TA + + +T +Y ST Sbjct: 14 RTLKVSTGKISRQSAGAIVIQYGDTVLLSTA---NRSKEARKGADFFPLTVDYIEKFYST 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + + R+I R +R + + + I V+ D Sbjct: 71 GKFPGGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYD---- 121 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + + D L + G VA++ G G I++ E + Sbjct: 122 -------EINMPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 174 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++VE A ++ + A + I + + Q++ Sbjct: 175 LDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221 >gi|332685840|ref|YP_004455614.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius ATCC 35311] gi|332369849|dbj|BAK20805.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius ATCC 35311] Length = 713 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + + Sbjct: 324 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGIEES 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 384 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALSQIIPSPEAFPYTIRLVA 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 440 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 486 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK +++ Sbjct: 487 ILTDIQGLEDHLGDMDFKVAGTKQG-ITALQMDIKIEGITEQILKEALEQAKKARMEILN 545 Query: 233 LQKDVISNE 241 ++ Sbjct: 546 ELTSTLAEP 554 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 29/237 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ L+++GDT +L A+ E K V + + G +P Sbjct: 14 RPLQVEVGQLAKQANGAVLIRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKVP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + QI ++ D Sbjct: 74 ---GGFIKRE---GRPSESATLTARLIDRPIRPMFTEGFRNEVQITNIVMSVEQDCSPAM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + + D+ Sbjct: 128 AAMLGSSLAL-------------TISDIPFNGPIAGVEVGRIDGEYVLNPTVEQSNQSDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241 D + T I V+ AE S+ L I +L+ Q + + E Sbjct: 175 DLSVAGTKEA-INMVESGAEE--VSESDMLGALLFGHAAIKELVAFQEEIRQAVGKE 228 >gi|242310417|ref|ZP_04809572.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489] gi|239522815|gb|EEQ62681.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489] Length = 714 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 30/246 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR ++R IS+ A S L G T L ATL + + + Sbjct: 333 RADGRGLKEVRPISIDTNFLPNAHSSVLFTRGQTQALVVATLGGDMDAQSYELLTNKASS 392 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G A R+ G + RAL + + + R I + Sbjct: 393 KERFMVHYNFPPFSVGEASSISAPGRRELGHG----NLAKRALEASIINGDM--RTIRLV 446 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++++++G + A + G +AL VA ++ G++C Sbjct: 447 SEILESNGSSSMATVCGGSLALVAAGI-------------ECTSLVAGVAMGLVCENDKY 493 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D + G I +Q + + LN AK+ ++ Sbjct: 494 VVLTDIMGLEDHDGDMDFKVAGSRHG-ITAMQMDIKLGGLNMQILKDALNQAKEARNHIL 552 Query: 232 KLQKDV 237 L ++ Sbjct: 553 NLMEEA 558 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 41/229 (17%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 +K GS ++ G+ +L T ++ + + +T +Y G P G Sbjct: 20 FAKQCSGSVYLQSGNNVVLATVAIDTQE---VVEEDFLPLTVQYIEKAYAAGKFP---GG 73 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KREA + G R++ R+LR + QI I V+ AD Sbjct: 74 YIKREA---KPGDFETLSARIVDRSLRPLFPKGYCYPTQITI--LVLSADQD-------- 120 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 A L + + L V+A+ G + +++ + +D Sbjct: 121 ---ADLQLLALNAASAALYVSEIPLYSPVSAVRIGKIGDNFVINPSLKQLEESSLDLFVS 177 Query: 193 M-TDSGHIVEVQ-----GSAERAT------FSQDHFFAMLNLAKDRIAD 229 + ++E++ + E ++ L +AK+ I+ Sbjct: 178 GVNEDLLMIEMRTFGGIKTQEGQAIFSANELQEEEMIEALEIAKNAISQ 226 >gi|224000017|ref|XP_002289681.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana CCMP1335] gi|220974889|gb|EED93218.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana CCMP1335] Length = 721 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 16/246 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHG 57 R+ GR+ N++R I + GS L G+T ++ TATL + I + Sbjct: 282 RIDGRKLNEVRVIDSEAGLFPRVHGSALFTRGETQVVATATLGDSGMRQKIDRISGMEEK 341 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y P G + A R+ G + RAL + A I ++ Sbjct: 342 RFYLQYTFPPSCVGETGRVGAPGRREVGHG----NLAERALVPTLPSEADFPYAIRVESL 397 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLCGYPIV 175 V +++G + A++ G +AL D ++ + +L KG V+ + ++ Sbjct: 398 VTESNGSSSMASVCGGCLALMDAGVPIKSPIAGIAMGMLLGDKGGVSDENAVIVS----- 452 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED+ +D G I Q + + + L+ AK+ ++ + Sbjct: 453 DILGTEDALGTMDFKVAGNKEG-ITTFQLDIKCEGLTLETMKKALDQAKEGRLHILGEME 511 Query: 236 DVISNE 241 + Sbjct: 512 KALKEP 517 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 25/170 (14%) Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + ++G KR+ GR + R+I R LR ++ Q++ ++ Sbjct: 33 RFSSAGTTSGAFNKRD---GRPAEHEILVCRLIDRPLRPLIAEGWRHETQLL--SWILSY 87 Query: 122 DGGTRT---AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 DG RT AIT + AL + D L VAA G + G +++ Sbjct: 88 DG-VRTCDPLAITASAAAL-----WLSDV--------PLLKPVAAAMVGYIDGQLVLNPT 133 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 + ++ T ++ ++G+A+ +D + + I Sbjct: 134 VEQMKHSRLNLTVAGTKEA-VLMIEGAAD--FLPEDLMVEAVTFGHEAIK 180 >gi|92115668|ref|YP_575397.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter hamburgensis X14] gi|91798562|gb|ABE60937.1| Polyribonucleotide nucleotidyltransferase [Nitrobacter hamburgensis X14] Length = 748 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I V A GS L G+T + TL + T Sbjct: 344 RIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 403 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G ++ RA+ V+ I + + Sbjct: 404 TFLLHYNFPPYSVGETGRLGSTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 459 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA ++L D ++ + + +L+G A+ + D+ Sbjct: 460 ITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAV---------LSDI 510 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + A +++ L A++ ++ Sbjct: 511 LGDEDHLGDMDFKVAGTEVG-ISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAKA 569 Query: 238 ISN 240 ++N Sbjct: 570 LTN 572 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 42/238 (17%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T T E V + T G + Sbjct: 42 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 101 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 102 P---GGYFKRE---GRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMENDPD 155 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL +G + A G + +++ E +D Sbjct: 156 VLAMVAASAALTLSGA-------------PFRGPIGAARVGFMNDEYVLNPTLDE--MVD 200 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229 V+ + V + S E S+D A++ LA+ + Sbjct: 201 TQLELVVAGTADAVLMVES-EAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKE 257 >gi|257063808|ref|YP_003143480.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Slackia heliotrinireducens DSM 20476] gi|256791461|gb|ACV22131.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Slackia heliotrinireducens DSM 20476] Length = 743 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 28/242 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIR---NTKH 56 R GR +++R + + GS L + G T L T L + T Sbjct: 315 RADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGLLNEAQRLDTIDPATGK 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ +Y P TG + A R+ G + RA+ V+ I + Sbjct: 375 RYMH-QYNFPPYCTGEVGRMGAPKRREVGHG----ALAERAILPVLPSEDEFPYAIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++++++G + A+ G+ +AL D +K V+ I+ G++ G Sbjct: 430 EILESNGSSSMASTCGSCLALMDAGV-------------PIKAPVSGIAMGLIKEEDGVV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 I+ D+ ED D+D T +G I +Q + S + L AK+ A ++ Sbjct: 477 ILSDIQGLEDFLGDMDFKVTGTANG-ITALQMDNKARGLSTEILGRALQQAKEGRAHILN 535 Query: 233 LQ 234 Sbjct: 536 AM 537 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 79/230 (34%), Gaps = 28/230 (12%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++K A G+ LVK G+T +L TA + E+ + G +P G Sbjct: 17 FETGELAKQATGAVLVKQGETTVLVTAVISAQEKDYDFFPLTVDFMEKMYAVGRIP---G 73 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE G+ + RMI R +R ++ I + Sbjct: 74 GYLKRE---GKASDKGTLTARMIDRPIRPGFADGFKQEVHVVATTFAIDGQNPPDCICVG 130 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDA 189 GA AL S G A + IV+ Y E T D++ Sbjct: 131 GASAAL-------------MIGSAPFDGPAACVRIARNAETKEFIVNPTYEEQETSDLEL 177 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T +I V+ A +++ A +N ++ IA + Q + ++ Sbjct: 178 TIAGTRD-YISMVEAGANE--VTEEDMLAAMNFGQEAIAAFCEKQAEFLA 224 >gi|283769562|ref|ZP_06342458.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa W1219] gi|283103830|gb|EFC05216.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa W1219] Length = 732 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R GR +++R + + GS L G+T +L+ TL + + + Sbjct: 318 IRPDGRALDELRSLDSQVDLLPRVHGSALFTRGETQVLSVTTLGPLSDAQMMDDLGMEEE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R + RAL V+ I Sbjct: 378 KRFMHQYNFPPFSVGEVGR----MGSPGRREIGHGALGERALAQVLPSEEEFPYAIRTSA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A+I ++L ++ + + G ++ + D Sbjct: 434 EVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTYSV---------LTD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + SQD L A ++ + Sbjct: 485 IQGMEDHYGDMDFKVAGTREG-ITALQMDIKVTGISQDILREALAQAHKGRMQILDNMEA 543 Query: 237 VISNE 241 I+ Sbjct: 544 CIAEP 548 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 26/231 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLPRS 69 I++ ++K A GS +V++ DT +L+TAT + + + G +P Sbjct: 15 ITVENGEIAKQAGGSVVVRYNDTTILSTATASSQAKDTDFFPLTVLYQEKMYAAGKIP-- 72 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G ++RE GR + R+I R +R + Q++ D + A+ Sbjct: 73 -GGFLRRE---GRPSEHATLTARLIDRPIRPLFAEGFRNEVQVVNTVLSNDPDASSEMAS 128 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ +AL G VA + + G +++ E++ D+ Sbjct: 129 LFGSSLALC-------------ISDIPFNGPVAGVQVVRVNGEFLINPSVEENAKGDLHL 175 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ A+ S++ A L + I L ++Q++VI++ Sbjct: 176 TVAGTKQA-INMVEAGAKE--VSEETMLAALQFGHEAIQKLCEIQEEVIAS 223 >gi|253997787|ref|YP_003049850.1| polynucleotide phosphorylase/polyadenylase [Methylovorus sp. SIP3-4] gi|313199851|ref|YP_004038509.1| polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688] gi|253984466|gb|ACT49323.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. SIP3-4] gi|312439167|gb|ADQ83273.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688] Length = 707 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL +E++ ++ Sbjct: 315 RIDGRNTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G + +R + + + I + + Sbjct: 375 RFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALL----AALPSQEEFGYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K HVA I+ G++ Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGV-------------PVKTHVAGIAMGLIKEGNRVAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D ++ G I +Q + + + A L AK+ ++ L Sbjct: 478 LTDILGDEDHLGDMDFKVAGSEDG-ITALQMDIKITGITAEIMQAALAQAKEGRLHILGL 536 Query: 234 QKDVISN 240 K+ + Sbjct: 537 MKEAMGE 543 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 38/234 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 E++L +++ A+G+ +V +GDT +L T + V + + T G +P Sbjct: 14 ELTLETGEIARQADGAVMVSYGDTVVLVTVVGKTDVKPGQDFFPLTVDYQERTYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R LR + + QI+ ++ + Sbjct: 74 ---GGFFKRE---GRPSEKETLTSRLIDRPLRPLFPEAFYNEVQIVATVMSSDSEIDSDI 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AI GA AL G + A G + G +++ + ++ Sbjct: 128 PAIIGASAALAISGI-------------PFYGPIGAARVGYINGEYVLNPTATQLKDTEL 174 Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232 D T + ++ V+ A+ + + A++NL I ++ Sbjct: 175 DLVVAATSTA-VLMVESEAKELPEDVMLGSVVYGHEQMQAVINL----INEIAA 223 >gi|223040232|ref|ZP_03610510.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter rectus RM3267] gi|222878485|gb|EEF13588.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Campylobacter rectus RM3267] Length = 735 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58 +R GR +R IS+ + A GSCL G T L ATL + M+ T+ G Sbjct: 342 VRADGRGLKDVRPISIETNILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGA 401 Query: 59 IT----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 +T Y S G +A R+ G + RAL +D + I + Sbjct: 402 VTDKFMFNYNFPGFSVGEASPLKAPGRRELGHG----NLAKRALAPSIDSDS--PYTIRL 455 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A++ G +AL + + +G A+ + Sbjct: 456 VSEILESNGSSSMASVCGGSLALRAAGVDTPKLVAGVAMGLIFEGEKHAV---------L 506 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D + G I +Q + S D L A + ++ L Sbjct: 507 TDIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGISLDVLKEALLQACEGRLHILNLM 565 Query: 235 KDV 237 + Sbjct: 566 ETA 568 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 81/253 (32%), Gaps = 50/253 (19%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 V+K A G+ L++ +T +L T E+ ++ T G +P G VKR Sbjct: 19 VAKQASGAALLRVKNTVVLATVAREDTQVSEDFLPLTVQYIEKTYAAGRIP---GGYVKR 75 Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136 E + G R+I R+LR + QI++ + + A+ A VA Sbjct: 76 ET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDLQVVALNAASVA 132 Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE--------------D 182 L+ + V + G + +++ E D Sbjct: 133 LY-------------LSDIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKD 179 Query: 183 STIDVDANFVMTDSGHIV--------------EVQGSAERATFSQDHFFAMLNLAKDRIA 228 + ++ + T ++ EV + + FS+D + A I Sbjct: 180 ELLMIEMRSIATQKDEMMPIALDPMMDPNLGGEVIATQDMNEFSEDLIVEAIAEAGKAIL 239 Query: 229 DLIKLQKDVISNE 241 ++ S Sbjct: 240 RASNAYEEAFSQH 252 >gi|149913069|ref|ZP_01901603.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b] gi|149813475|gb|EDM73301.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b] Length = 712 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + +R+I + GS L G+T L TL I + HG + Sbjct: 319 RIDGRSLDTVRQIVSETGLLPRTHGSALFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 378 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 379 NFLLHYNFPPYSVGEAGR----VGPPGRREVGHGKLAWRALQAVLPAPTDFPYTIRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 435 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGEYA 481 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I +Q + A + + L AKD ++ Sbjct: 482 VLTDILGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITPEIMKKALAQAKDGRLHILN 540 Query: 233 LQKDVISN 240 + ++ Sbjct: 541 EMSNALTE 548 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 35/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 17 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + +++ C V+ D Sbjct: 76 --GGFFKREA---RPTEKETLTARLIDRPIRPLFVSGFKHE--VLVMCTVLSHDLVNDPD 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST-- 184 A+ A AL G +A G G I++ D ED Sbjct: 129 IVAMIAASAALTISGA-------------PFMGPIAGCRVGYSDGEYILNPD-VEDMHDL 174 Query: 185 ---IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D + V+ + V + S E S+D + A ++I +I L Sbjct: 175 RNNPDQRLDLVVAGTKDAVMMVES-EAYELSEDEMLGAVTFAHEQIQPVIDL 225 >gi|119944587|ref|YP_942267.1| polynucleotide phosphorylase/polyadenylase [Psychromonas ingrahamii 37] gi|187611274|sp|A1ST53|PNP_PSYIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119863191|gb|ABM02668.1| Polyribonucleotide nucleotidyltransferase [Psychromonas ingrahamii 37] Length = 698 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R + + V GS L G+T L TATL + I K Sbjct: 314 RIDGRDPESIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 374 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGVLAVMPSLEEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D LK VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PLKASVAGIAMGLVKEGEEFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEG-ITALQMDIKIEGITREIMQIALNQAKAARLHILTV 535 Query: 234 QKDVISN 240 + Sbjct: 536 MDQALPQ 542 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT + + + + + + T G +P Sbjct: 15 VTLETGVMARQATAAVMCSMDDTCVFVSVVGKNADNQERDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I I + Sbjct: 74 --GGFFKRE---GRPSEDETLIARLIDRPVRPLFPAGFKNEVQVIATVVSINPEVNPDVV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL KG + G G +++ E T D Sbjct: 129 AMIATSAALS-------------ISGMPFKGPIGCARVGYKEGEYLLNPTKTELETS--D 173 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 N V++ + + V + S E S+D + D+ +++ K+ Sbjct: 174 LNLVVSGTDNAVLMVES-EAGILSEDVMLGAVVFGHDQQQIVVESIKE 220 >gi|332298592|ref|YP_004440514.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense DSM 12168] gi|332181695|gb|AEE17383.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense DSM 12168] Length = 699 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 18/246 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R+ GR +R IS V GS + G+T L AT L+E+V I + Sbjct: 313 VRVDGRGTEDIRPISCEIDVLPRPHGSAIFTRGETQSLAVATLGTALDEQVYDDIDGDRR 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G V R R+ G + R+L +V I + Sbjct: 373 EHFILHYNFPPYSVGE-VGRMGTGRREIGHG----NLARRSLEPMVPSREAFPYTIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 ++++++G + A++ G + + M+ + + +G Y I+ Sbjct: 428 EIMESNGSSSMASVCGGTLCMLAAGVPMKKPVAGIAMGLITEGD-------KYEKYAILS 480 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I Q + A + + L AK ++ + Sbjct: 481 DILGEEDHLGDMDFKVAGTADG-ITGFQMDIKIAGVTTEIMQKALAQAKRGRLHILGIMN 539 Query: 236 DVISNE 241 IS Sbjct: 540 QTISKP 545 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 82/219 (37%), Gaps = 26/219 (11%) Query: 22 KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77 K A G+ +FG + ++ TA T +E + + G +P G +KRE Sbjct: 23 KQANGAVYAQFGGSAVIATACASGTAQEGLDFVPVTVDYNEKYYAAGKIP---GGFIKRE 79 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 GR + + R+I R +R + +++ QI+ C ++ + Sbjct: 80 ---GRPKDKEILVSRLIDRPMRPLFEVAFGREIQIVPTC-------------VSSDQINP 123 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 D L + + G +A + + G +++ Y + +++ T G Sbjct: 124 PDMLAVVASSAAVVISDIPFNGPIAGVRVAYVDGDYVLNPTYAQIEKAELEIVVAGTADG 183 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V+G A S+D L A++ I + LQ + Sbjct: 184 -FTMVEGGANE--VSEDVMLGALAKAQEFITAMCGLQNE 219 >gi|124515695|gb|EAY57204.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum rubarum] Length = 713 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 18/244 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR + +R I++ + GS L G+T L+ ATL + G T Sbjct: 319 VRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDALEGEST 378 Query: 61 ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R+ G + RAL+ V+ I + Sbjct: 379 KRFMLHYNFPPFSVGETKPMRGPGRREIGHG----NLAERALKPVLPARDSFPYSIRLVS 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A + G +A+ D ++ + + +G AI + D Sbjct: 435 DILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIAI---------LSD 485 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T++G I VQ + + + L A++ +++ K Sbjct: 486 ILGLEDHLGDMDFKVTGTENG-ITAVQMDIKITGITVELMRESLQKAREGRLYIMEKMKM 544 Query: 237 VISN 240 + + Sbjct: 545 ALPS 548 Score = 96.7 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 81/228 (35%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 + L K A+GS +V T ++ TA + V + G +P Sbjct: 15 VRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQERAYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+ R R+I R LR + Q+I I G + Sbjct: 74 --GGFFKRE---GKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGISDVM 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ + AL+ VAA+ G + G IV+ E +D Sbjct: 129 AVVASSAALY-------------VSDIPFMNPVAAVKVGCVDGTFIVNPTLDEQERSTLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T I+ V+G + S++ F + ++LA I LI+ Q+ Sbjct: 176 LVVAGTRDA-IMMVEG--QGNEISEETFLSAIDLAHKSILPLIEAQEK 220 >gi|110678016|ref|YP_681023.1| polynucleotide phosphorylase/polyadenylase [Roseobacter denitrificans OCh 114] gi|123065912|sp|Q16CF6|PNP_ROSDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|109454132|gb|ABG30337.1| polyribonucleotide nucleotidyltransferase [Roseobacter denitrificans OCh 114] Length = 711 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 91/234 (38%), Gaps = 27/234 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R+I + GS L G+T L TL + HG + Sbjct: 318 RIDGRKTDEIRDIVCETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + + + + Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGSYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T++G I +Q + A + + L AK Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALEQAKAG 533 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 78/234 (33%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R LR + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPLRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G +A G G I++ D D Sbjct: 128 MVAMIAASAALTISGA-------------PFMGPIAGARVGFEDGEYILNPTV--DDMQD 172 Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + N V ++ V+ +E S+ + A D I ++ L Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVKFAHDAIQPVLDL 224 >gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG] Length = 303 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 81/230 (35%), Gaps = 16/230 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ +MR + + A GS V G T L G I Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHAS-QDRGSINL 105 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E+ P +T ++A S R + + ++ +AL +VV L I + V++ Sbjct: 106 EFRFAPFAT---TGKDACSER---DTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DGG +AA+T +AL D M D GH + + ++D D E Sbjct: 160 DGGLISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCV----LLDPD-AE 214 Query: 182 DSTIDVDANFVMTDSGHIVEVQG----SAERATFSQDHFFAMLNLAKDRI 227 + D N D G+ + A + + ML L + Sbjct: 215 ERRAFADKNCTFVDLGYCPALASVCFIRASGTLLATESGEQMLRLCEAAC 264 >gi|189485170|ref|YP_001956111.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|226704829|sp|B1GZG8|PNP_UNCTG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|170287129|dbj|BAG13650.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 689 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI- 59 +R GR ++R I+ V GS L G T L T TL P ++ + Sbjct: 310 IRTDGRGFEEIRPITCETGVLPRVHGSSLFTRGQTQALVTVTL--GSPCDMQVIDELIVE 367 Query: 60 -----TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y +TG + AVS R+ G + +AL+ ++ + I Sbjct: 368 YKERFMLHYNFPGFATGEPKRDRAVSRREIGHG----NLAKKALKHIMPDGEDFGYAVRI 423 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 D+++++G + A++ G +AL + +K A +S G++ Sbjct: 424 VSDILESNGSSSMASVCGGSLALFNAGV-------------PVKSSCAGVSMGLMKEGGS 470 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G I +Q + + + L AK + Sbjct: 471 YVILTDITGMEDHLGDMDFKVAGTRKG-ITALQMDIKILGLTTEIVAQALEQAKRGRFFI 529 Query: 231 IKLQKDVIS 239 + V+S Sbjct: 530 LDQMDAVVS 538 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 78/228 (34%), Gaps = 42/228 (18%) Query: 20 VSKYAEGSCLVKFGDT------------HLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67 V+K A GSC V+ G+T + + + T G +P Sbjct: 22 VAKQAGGSCTVRIGETVVLVTVVSLKEPKV--------GIDFMPLTVDYRERTYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE + + G + R+I R++R + QI + + Sbjct: 74 ---GGFFKRE--TRPRDG-EVLVSRLIDRSIRPLFPEYYRNDTQISAVVLSHDGENDSEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AAI GA +AL+ +A++ G + G I++ E D+ Sbjct: 128 AAILGASIALY-------------TSDLPFTTPIASVRIGKINGQLIINPLIAEQKLSDL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D T+ + V+ A S+ LNLA + + QK Sbjct: 175 DLVVSGTEEA-LTMVEAGARE--LSEAEMLEALNLAGKTLKGICLFQK 219 >gi|27375890|ref|NP_767419.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium japonicum USDA 110] gi|81740094|sp|Q89WB3|PNP_BRAJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27349028|dbj|BAC46044.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum USDA 110] Length = 720 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I V A GS L G+T + TL + T Sbjct: 316 RIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+ V+ I + + Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D ++ + + +L+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+SG I +Q + +++ L AKD ++ Sbjct: 483 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIEGITEEIMKVALGQAKDGRIHILGEMAKA 541 Query: 238 ISN 240 ++N Sbjct: 542 LTN 544 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 36/235 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T E V + T G + Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQEKTYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I + Sbjct: 74 P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIATVLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ + AL KG + A G + +++ E Sbjct: 128 IVALVASSAALTLSGA-------------PFKGPIGAARVGFVNDEYVLNPTLDEMVDTQ 174 Query: 187 VDANFVMTDSGHIV------EVQGSAERAT--FSQDHF----FAMLNLAKDRIAD 229 +D T ++ E+ F HF A++ LA+ + Sbjct: 175 LDLVVAGTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKE 229 >gi|325266482|ref|ZP_08133159.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans ATCC 33394] gi|324981925|gb|EGC17560.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans ATCC 33394] Length = 705 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 95/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ + + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFNYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+ + A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ + Sbjct: 483 LGDEDHLGDMDFKVAGTTDG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMQAA 541 Query: 238 ISNE 241 +S Sbjct: 542 VSGP 545 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 28/234 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSCDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ + +D Sbjct: 130 AMIGASAALV-------------LSGVPFAGPIGAARVGYVNDTYVLNPTKQQLHRSKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T ++ +E +D + +++ +I+ + +++EV Sbjct: 177 LVVAGTAQAVLMV---ESEADILPEDVMLGAVVYGHEQMQAVIQAINE-LADEV 226 >gi|154244245|ref|YP_001415203.1| polynucleotide phosphorylase/polyadenylase [Xanthobacter autotrophicus Py2] gi|226704833|sp|A7IC03|PNP_XANP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|154158330|gb|ABS65546.1| Polyribonucleotide nucleotidyltransferase [Xanthobacter autotrophicus Py2] Length = 730 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 18/242 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I + A GS L G+T L ATL ++ G Sbjct: 317 IRIDGRDVYTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+ ++ + + Sbjct: 377 EHFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAKHEFPYTLRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G +AL D + + +L+G A+ + D Sbjct: 433 EILESNGSSSMATVCGTSLALMDAGVPLRRPVAGIAMGLILEGEKFAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G + +Q + A +++ L AKD ++ Sbjct: 484 ILGDEDHLGDMDFKVAGTEQG-VTSLQMDIKIAGITEEIMKVALTQAKDGRVHILGEMAK 542 Query: 237 VI 238 + Sbjct: 543 AL 544 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 78/238 (32%), Gaps = 42/238 (17%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L + A+GS L +GDT +L T + + + T G + Sbjct: 14 RTLTLETGKMARQADGSVLATYGDTKVLATVVSAREPKPGQDFFPLTVNYQEKTYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV--IQADGG 124 P G KRE GR + + R+I R +R + Q++I ++ D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKCDTQVVITVLAHDLEND-- 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 D + + + G V A G + +++ E Sbjct: 126 -------------PDVVAMVAASAALTLSGVPFMGPVGAARVGFIDNEYVLNPTVDEVKE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERAT---------FSQDHF----FAMLNLAKDRIAD 229 ++ T ++ V+ A+ F HF A++ LA+ + Sbjct: 173 SALELVVAGTGDA-VLMVESEAKELPEEIMLGAVMFGHRHFQPVIEAIIKLAEKAAKE 229 >gi|308802860|ref|XP_003078743.1| ribonuclease PH (ISS) [Ostreococcus tauri] gi|116057196|emb|CAL51623.1| ribonuclease PH (ISS) [Ostreococcus tauri] Length = 693 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 39/255 (15%) Query: 2 RLSGRQENQ-MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R GR ++ +R +S+ + A GS V+ G+T + + + G I Sbjct: 461 RSDGRASDEHLRALSVALDTNSRASGSSYVELGNTKVSCAVYGPRRPRVDDLTVNTGVID 520 Query: 61 AEYGMLPRS----TGNRVKREAVSGRQGGRS---QEIQRMIGRALRSVVDLSALGSRQII 113 + +P + RE + RS E+ I LR+ Q+ Sbjct: 521 VDVFRVPFARKRAIHVERGRENEREKDLNRSAADVELSARIADVLRACALTETFPRAQVD 580 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + ++ +DGG A++ A AL M D + +A + Sbjct: 581 VYVTIMDSDGGEVVASVLAASAALARAGVEMADLA-------------SACELVRIGERL 627 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER--------ATFSQDHFFAMLNLAKD 225 ++D E +G + Q S+E ++ D L Sbjct: 628 VLDPTEEECER----------GNGKVFLAQMSSEEGMVQGETFGRWTADESRRALEQCAA 677 Query: 226 RIADLIKLQKDVISN 240 + ++ ++ Sbjct: 678 GCNRFDTIVREALAK 692 >gi|109103041|ref|XP_001112421.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Macaca mulatta] Length = 754 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R IS K GS L + G T +L T T + ++V I Sbjct: 323 RCDGRDLTSLRNISCEVDTFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQVITAING 382 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + +AL V+ I Sbjct: 383 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPKDF--PFTIR 436 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K G + Y Sbjct: 437 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 493 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 494 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 552 Query: 233 LQKDVISNE 241 + IS Sbjct: 553 IMNKTISKP 561 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+GS +V+ GDT ++ TA T + A G +P Sbjct: 19 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 78 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE + + R+I R++R + Q++ C+++ DG Sbjct: 79 ---TNYLRREIGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 130 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA VAL G V A+ GM+ G +V+ E S+ Sbjct: 131 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSS 177 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 178 TLNLVVAGAPKSQIVMLEASAEN 200 >gi|89101186|ref|ZP_01174017.1| PnpA [Bacillus sp. NRRL B-14911] gi|89084095|gb|EAR63265.1| PnpA [Bacillus sp. NRRL B-14911] Length = 706 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR + +R +S + GS L G T L T A + ++ + + Sbjct: 315 VRPDGRGLDVIRPLSSEIGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEEE 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ + + Sbjct: 375 KRFMHHYNFPNFSVGE----TGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKSGDYYS 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ L AK ++ Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIEGLSREILEEALQQAKAGRMQILD 536 Query: 233 LQKDVISNE 241 I+ Sbjct: 537 SMLATIAEP 545 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 93/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ L+++GDT +L TA+ E K + + + G +P Sbjct: 15 RTLTVEIGQLAKQANGAALIRYGDTAVLSTATASKEPKNLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q++ + D + Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSMVMSVDQDCSSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A ++ G + G +++ + + D+ Sbjct: 129 AAMFGSSLALS-------------VSDIPFGGPIAGVTVGRINGEFVINPTVEQQNESDM 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ A+ ++ + + I LI Q+ ++S Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EETMLEAIMYGHEEIKRLISFQEQIVSE 225 >gi|307109085|gb|EFN57324.1| hypothetical protein CHLNCDRAFT_21722 [Chlorella variabilis] Length = 223 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 69/226 (30%), Gaps = 25/226 (11%) Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 L V A GS +FG T ++ + + ++ G + + + ++ R Sbjct: 5 LKTGVISQASGSAYAEFGHTKVMVGVYGPRQSERRVGYSEQGRVNCDVKLASFASRQRG- 63 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 Q +E+ + AL + DL++ + + V++A GG Sbjct: 64 -------QSAEERELSAALQTALEAAADLASFPKASVDVFVLVLEAGGG----------- 105 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MT 194 + + VAA S + G ++D E + M Sbjct: 106 --ELGVAATAAALALADAGVEMFDLVAACSVSRVQGSLVLDPTADEVFREEGGLVLALMP 163 Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 S + ++ +S + LA A L + + Sbjct: 164 TSSEVTQMVSRGR---WSSSQLREGMELAMGGCAQLDAAARQCLKE 206 >gi|74225136|dbj|BAE38260.1| unnamed protein product [Mus musculus] Length = 783 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R IS + K GS L + G T +L T T + +++ I Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL V+ I Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 79.8 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+G +++ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE S R R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A+ GA VAL G V A+ GM+ G +V+ E S+ Sbjct: 166 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|308068706|ref|YP_003870311.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Paenibacillus polymyxa E681] gi|305857985|gb|ADM69773.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) [Paenibacillus polymyxa E681] Length = 700 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R I + GS L G T L T A + ++ I + Sbjct: 313 VRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGIDLEET 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RAL V+ I + Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPSETEFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA ++ G++ Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGDHVS 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + + L AK+ ++ Sbjct: 476 VLTDIQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKINGIDRQILQDALKQAKEGRLFILS 534 Query: 233 LQKDVISNE 241 + I Sbjct: 535 KMMEAIQKP 543 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 82/227 (36%), Gaps = 28/227 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ L ++K A + V +G+T +L T T + ++ +T Y + Sbjct: 12 RKLVLETGRLAKQANAAVKVSYGETVVLCTVTASRE----PKDLDFFPLTVNYEERLYAV 67 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR ++ R+ R +R + Q++ + D Sbjct: 68 GKIPGGFIKRE---GRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G AL G + ++ G + G +++ D + + D Sbjct: 125 IAAMIGTSAALS-------------ISDVPFNGPIGGVAVGRVDGQFVINPDIAQQNASD 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + T I+ V+ AE ++ + D I +++ + Sbjct: 172 LYLVVAGTKDA-IMMVE--AEGNEIPEEVMLEAIMFGHDEIKNIVAV 215 >gi|313901029|ref|ZP_07834517.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2] gi|312953987|gb|EFR35667.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2] Length = 736 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR+ +++R + + A GS L G+T +L+ TL I + + Sbjct: 330 VRPDGRKVDEIRPLDSQVDILPRAHGSALFTRGETQVLSVTTLGPMNDNQIIDDLTEVET 389 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + RAL V+ I Sbjct: 390 KRFMHHYNFPPYSVGETGR----MGSPGRREIGHGALGERALSQVLPSVEDFPYTIRTVA 445 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V +++G + A+I ++L +K VA I+ G++ Sbjct: 446 EVTESNGSSSQASICAGTMSLMAAGV-------------PIKAPVAGIAMGLIMDEENGK 492 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G I +Q + +++ F L AK A + Sbjct: 493 YTVLTDIQGMEDHFGDMDFKVAGTSKG-ITALQMDIKVTGITREVFEEALAQAKVARAQI 551 Query: 231 IKLQKDVISNE 241 ++ IS Sbjct: 552 LENMMAAISEP 562 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 29/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +++ V+K A G+ LV++ DT +L+TAT +E + + G + Sbjct: 24 RGLTVETGEVAKQAGGAVLVRYDDTVVLSTATASKQAKEGIDFFPLTVLFEEKLYSVGKI 83 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR + RMI R +R + Q++ + D Sbjct: 84 P---GGFLRRE---GRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQDCTPE 137 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +AL G +A + G + G I++ + D Sbjct: 138 MTAMFGASLALC-------------VSDIPFNGPIAGVMVGRVDGEYIINPTPEQLEKSD 184 Query: 187 VDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ T + ++VE + S++ + + I L+ Q++ Sbjct: 185 INLTVAGTKYAVNMVE----SGAKEVSEEAMLGAIMFGHEHIKQLVAFQEE 231 >gi|120434746|ref|YP_860433.1| polynucleotide phosphorylase/polyadenylase [Gramella forsetii KT0803] gi|187610271|sp|A0LYC0|PNP_GRAFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117576896|emb|CAL65365.1| polyribonucleotide nucleotidyltransferase [Gramella forsetii KT0803] Length = 750 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 20/246 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56 +RL GR+ +++R+I GS + G+T L T TL + Sbjct: 317 IRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANQIDMPSHEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + RAL+ ++ + + Sbjct: 377 ERFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRALKGMIPEE--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 +V++++G + A + +AL D M+ + + IS G Y ++ Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVQMKKPVSGIAMG--------LISDGDSGKYAVLS 482 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I Q + S + L A+D +++ Sbjct: 483 DILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLT 541 Query: 236 DVISNE 241 D I+ Sbjct: 542 DTIAQP 547 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REIS+ K A GS +V+ G LL T ++ +P + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDLPFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I ++ D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYSAETQVMI--QLMSHD----- 122 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + + + + + + ++ G + G I++ + Sbjct: 123 ------DEVMPEAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRA--QLAES 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D ++ S V + E S++ + A + I I+ Q Sbjct: 175 DIEMMIGASADSVMMV-EGEMDEISEEDMVEAIKFAHEAIKVQIEAQ 220 >gi|330504823|ref|YP_004381692.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina NK-01] gi|328919109|gb|AEB59940.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina NK-01] Length = 701 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R + +++ + I + + Sbjct: 376 PFMLHYNFPPYSVGE-CGRMGATGR---REIGHGRLARRGVAAMLPSADEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + VL+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGDKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L A + +++ V Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQV 541 Query: 238 ISN 240 I+ Sbjct: 542 IAQ 544 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T + + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA R + R+I R +R + Q+I Sbjct: 75 ---GGFFKREA---RPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G + A +++ +Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFNGPIGAARVAFHPETGYLLNPNYEQLKASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A + +I+ + Sbjct: 176 LDMVVAGTKDAVLMV---ESEAKELTEDQMLGAVLFAHEEFQVVIQAVAE 222 >gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi] gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi] Length = 280 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 30/183 (16%) Query: 1 MRLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59 +R R+ NQ+R++ + V A+GS G+T ++ + E I Sbjct: 6 LRRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPES--SMKEKGDQAII 63 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 M R+ + +E + +I + L +V+ + I I V+ Sbjct: 64 DV---MF-------QPRDK---KASEEEKEYELIIRQTLENVILTNIYPRTVITISIQVV 110 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLD 178 Q DG +A++ A +AL D M K + + SC L G ++D Sbjct: 111 QYDGCLLSASLNAASLALLDAGVAM-------------KTTLVSSSCSYLNSGDCLLDPT 157 Query: 179 YGE 181 E Sbjct: 158 RIE 160 >gi|74184409|dbj|BAE25732.1| unnamed protein product [Mus musculus] Length = 783 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R IS + K GS L + G T +L T T + +++ I Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL V+ I Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 79.4 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+G +++ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE S R R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A+ GA VAL G V A+ GM+ G +V+ E S+ Sbjct: 166 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|74183452|dbj|BAE36595.1| unnamed protein product [Mus musculus] Length = 783 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R IS + K GS L + G T +L T T + +++ I Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL V+ I Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLP 67 R++ ++ ++A+G +++ GDT ++ TA + K + A G +P Sbjct: 54 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE S R R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A+ GA VAL G V A+ GM+ G +V+ E S+ Sbjct: 166 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|104780032|ref|YP_606530.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas entomophila L48] gi|122985959|sp|Q1IF39|PNP_PSEE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|95109019|emb|CAK13715.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Pseudomonas entomophila L48] Length = 701 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEA 530 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 ++L +++ A G+ LV + T +L T ++ + + + T G + Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + + Q++ Sbjct: 74 P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 AA+ G AL +G + A +++ Y + + Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +IK K+ Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIKAVKE 222 >gi|192359049|ref|YP_001980963.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio japonicus Ueda107] gi|226702631|sp|B3PIA0|PNP_CELJU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|190685214|gb|ACE82892.1| polyribonucleotide nucleotidyltransferase [Cellvibrio japonicus Ueda107] Length = 710 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ V A GS L G+T L ATL + I + G Sbjct: 315 RIDGRDNKTVRPITVDVGVLPKAHGSALFTRGETQALVVATLGNARDVQIIDQLEGEKKE 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R +++V+ + + + + Sbjct: 375 AFLLHYNFPPYSVGE-CGRMGSTGR---REIGHGRLAKRGVQAVLPKAESFPYTLRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ G+ +AL D LK VA I+ G++ G+ + Sbjct: 431 ITESNGSSSMASVCGSSLALMDAGV-------------PLKAPVAGIAMGLVKEDNGFAV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG + +Q + +++ L A ++ Sbjct: 478 LTDILGDEDHLGDMDFKVAGTTSG-VTALQMDIKIEGITEEIMEIALEQALAARLHILGE 536 Query: 234 QKDVISN 240 V+S Sbjct: 537 MNKVLSQ 543 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 77/231 (33%), Gaps = 32/231 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ LV G+ +L T + + + G +P Sbjct: 15 VTLETGRIARQATGAVLVSIGEVAVLCTVVGAKEASPGQDFFPLSVHYQEKAYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 G KRE GR + R+I R +R + L Q+I C V+ D Sbjct: 74 --GGYFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVI--CTVVSTDKKQDPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 AA+ G AL G + A G G I++ Y + T Sbjct: 127 IAAMIGTSAALAVSGI-------------PFNGPIGAARVGYTQGEGYILNPSYKQLETS 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D T ++ +E +D + + +I+ + Sbjct: 174 ELDMVVAGTKDAVLMV---ESEAKELPEDIMLGAVLYGHQEMQAVIQACAE 221 >gi|167035698|ref|YP_001670929.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida GB-1] gi|189037313|sp|B0KHX3|PNP_PSEPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|166862186|gb|ABZ00594.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida GB-1] Length = 701 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEA 530 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 ++L +++ A G+ LV + T +L T ++ + + + T G + Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + + Q++ Sbjct: 74 P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 AA+ G AL +G + A +++ Y + + Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I+ K+ Sbjct: 175 SLDMVVAGTADAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222 >gi|170719911|ref|YP_001747599.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida W619] gi|226702679|sp|B1J2B3|PNP_PSEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169757914|gb|ACA71230.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida W619] Length = 701 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEA 530 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 ++L +++ A G+ LV + T +L T ++ + + + T G + Sbjct: 15 VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + + Q++ Sbjct: 74 P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 AA+ G AL +G + A +++ Y + + Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I+ K+ Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222 >gi|55957290|emb|CAI14013.1| exosome component 8 [Homo sapiens] gi|119628986|gb|EAX08581.1| exosome component 8, isoform CRA_c [Homo sapiens] Length = 275 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 26/257 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115 + P + SG G +Q + I + ++ L + + + Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGIG--LTGAKLQDCMSRA 254 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 255 VTRHKEVKKLMDEVIKS 271 >gi|75674227|ref|YP_316648.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter winogradskyi Nb-255] gi|123614401|sp|Q3SWP5|PNP_NITWN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|74419097|gb|ABA03296.1| 3'exoribonuclease [Nitrobacter winogradskyi Nb-255] Length = 718 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I V A GS L G+T + TL ++ G Sbjct: 316 RIDGRDVKTVRNIVAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSLAGTYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+R V+ I + + Sbjct: 376 TFLLHYNFPPYSVGETGRLGGAKRREIGHG----KLAWRAIRPVLPPHHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA ++L D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGERYAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A +++ L AKD ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 38/236 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T + E V + T G + Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQEKTYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPTEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL KG + A G + +++ E Sbjct: 128 ILAMVAASAALTLSGA-------------PFKGPIGAARVGFINDEYVLNPTLDEIVDTQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHF----FAMLNLAKDRIAD 229 +D T ++ V+ A+ + F HF A++ LA+ + Sbjct: 175 LDLVVAGTADA-VLMVESEAKELSEEIMLKAVMFGHRHFQPVIDAIIELAEKAAKE 229 >gi|310658988|ref|YP_003936709.1| polynucleotide phosphorylase/polyadenylase [Clostridium sticklandii DSM 519] gi|308825766|emb|CBH21804.1| polynucleotide phosphorylase/polyadenylase [Clostridium sticklandii] Length = 699 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R R ++R I V GS L G T +++ A + ++ + + Sbjct: 311 IRPDNRMHEEIRPIWSEAGVLPRTHGSALFTRGQTQVMSITTLGALGDVQILDGLSEEEE 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL ++ I + Sbjct: 371 KRYMHHYNFPAYSVGEARPSRGPGRREIGHG----ALAERALEPMLPSKEDFPYAIRVVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ ++L D ++D + + +G AI + D Sbjct: 427 EVLSSNGSTSQASVCGSTLSLLDAGVPLKDMVAGIAMGLIKEGDDVAI---------LSD 477 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + A ++ L A+ ++ K Sbjct: 478 IQGMEDFLGDMDFKVAGTEKG-ITAIQMDIKIAGIDEEILTRALEQARVGRLHILNEMKK 536 Query: 237 VIS 239 +S Sbjct: 537 TLS 539 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 90/234 (38%), Gaps = 27/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +S+ V++ A G+C+++ GDT +L A+ E + + + + G + Sbjct: 12 RNLSVEIGKVAELANGACILRSGDTVVLVVASNSEKPREGIDFFPLSVDYEEKMYSAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR RS R+I R +R + Q++ + + Sbjct: 72 P---GGFIKRE---GRPSERSILTSRLIDRPIRPLFPKGYRNDVQVVATVLSMDQNSNPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 T A+ S G ++S G++ G I++ D D Sbjct: 126 TMAMI-------------GSSIALSISSIPFNGPTGSVSVGLIDGEFIINPDL--DQRAK 170 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 V++ + + + + + S+D + A + I ++ ++++++ Sbjct: 171 SQMYLVVSGTKEAIMMVEAG-SSEISEDTMLKAILFAHEEIKKIVGFIEEIVND 223 >gi|256425469|ref|YP_003126122.1| polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis DSM 2588] gi|256040377|gb|ACU63921.1| Polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis DSM 2588] Length = 793 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 17/238 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +RL GR +Q+R +++ + GS L G+T LTT TL + +K+ Sbjct: 317 VRLDGRSLDQVRPLAMETDILPSPHGSALFTRGETQSLTTVTLGTPDDELLSESAATSKY 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG R+ G + R+L+ ++ S + + + Sbjct: 377 TKFILHYNFPPFSTGEVKPMRGPGRREVGHG----NLAMRSLKQMMPGSEY-AYTVRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A + +AL D + + + G ++ S G + D Sbjct: 432 DILESNGSSSMATVCAGSLALMDAGVPLPKHVSGVAM-----GLISRASDGKWA--VLTD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + ED D+D T G I +Q + S D L A+ +I Sbjct: 485 ILGDEDHLGDMDFKVTGTRDG-ICGIQMDIKVDGLSMDVMRKALEQARSGRLHIIDAM 541 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 87/230 (37%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R +++ + A+G+ V+ G+ LL T T + + + A G + Sbjct: 16 RIVTIETGKLARQADGAVTVRLGNCILLATVVAAKTPKPGQSFFPLTVDYQEKFASAGRI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G+ KRE G+ I R+I RALR + Q+++ Sbjct: 76 P---GSFFKRE---GKLSDYEVLISRLIDRALRPLFPDDYFCEVQVLVSL---------- 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I+ + D L + + ++ ++ + + G +++ + D Sbjct: 120 ---ISSDPEVMPDALACLAASAALAVSDVPIQEIISEVRVSRIDGQLVINPNRTPLEKAD 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T+ +I+ V+G E S++ + +A + I +K Q++ Sbjct: 177 MDFIIGATEK-NIMMVEG--ESKECSEEDIIKAIEVAHEAIRVQVKAQEE 223 >gi|257870995|ref|ZP_05650648.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum EG2] gi|257805159|gb|EEV33981.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum EG2] Length = 705 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 26/239 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L+ T E ++ + + Sbjct: 318 IRPDGRKLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + ++ L+ AK +++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALSQAKKARMEIL 538 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 90/233 (38%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + + ++K A G+ LV++GDT +L+ A ++T +T Y + Sbjct: 14 RPLQVEVGQLAKQANGAVLVRYGDTVVLSAAV----ASKEAKDTDFFPLTINYEEKMYAV 69 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 70 GKVPGGFIKRE---GRPSTEATLTARLIDRPIRPMFADGFRNEVQVTNIVMSVEQDCSPA 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +AL G +A + G + G +++ + D Sbjct: 127 MAAMLGSSLALS-------------ISDVPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ++ T I V+ A+ S+D L + I +L+ Q+++++ Sbjct: 174 IELTVAGTKKA-INMVESGAKE--VSEDDMLGALLFGFEAIKELVAFQEEIVA 223 >gi|25188204|ref|NP_082145.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor [Mus musculus] gi|71159797|sp|Q8K1R3|PNPT1_MOUSE RecName: Full=Polyribonucleotide nucleotidyltransferase 1, mitochondrial; AltName: Full=3'-5' RNA exonuclease OLD35; AltName: Full=PNPase old-35; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1; AltName: Full=Polynucleotide phosphorylase-like protein; Flags: Precursor gi|22799101|emb|CAD45436.1| polynucleotide phosphorylase-like protein [Mus musculus] gi|33585810|gb|AAH55826.1| Polyribonucleotide nucleotidyltransferase 1 [Mus musculus] gi|56208052|emb|CAI25081.1| polyribonucleotide nucleotidyltransferase 1 [Mus musculus] gi|74143624|dbj|BAE28862.1| unnamed protein product [Mus musculus] gi|148691866|gb|EDL23813.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Mus musculus] Length = 783 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R IS + K GS L + G T +L T T + +++ I Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL V+ I Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLP 67 R++ ++ ++A+G +++ GDT ++ TA + K + A G +P Sbjct: 54 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE S R R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A+ GA VAL G V A+ GM+ G +V+ E S+ Sbjct: 166 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|307202592|gb|EFN81927.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial [Harpegnathos saltator] Length = 618 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 17/246 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52 +R GR + +R+IS + GS + + G T ++ T TL+ + V M I Sbjct: 203 VRCDGRSLSDIRDISCQVDLFNPLHGSAVFQRGQTQVMCTVTLDSLESAFKMDAVSMLIS 262 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K Y P +T GR G R + + LR ++ I Sbjct: 263 GMKEKNFFLHYEFPPYATNE----IGPVGRVGRREMGHGALAEKGLRPIIPKD--YPFTI 316 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A I G +AL D + + + + K A + Sbjct: 317 RLTSEVLESNGSSSMATICGGSLALLDAGIPISSSAAGVAIGLLTKYDEAKTD--IEDYK 374 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G +Q + + A ++IK Sbjct: 375 ILTDILGIEDYFGDMDFKIAGTKRG-FTALQADIKIPGVPLKIIMECVQHASTAKTEIIK 433 Query: 233 LQKDVI 238 + VI Sbjct: 434 IMNKVI 439 >gi|255011565|ref|ZP_05283691.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis 3_1_12] Length = 648 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 92/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLAHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ ++ + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHG----NLAHRALKKMIPED--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + LN AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538 Query: 232 KLQKDVISNE 241 ++ I+ Sbjct: 539 GKIQETIAEP 548 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHGWITAEYGML 66 R I+L K A+GS +++ G+T LL T ++ VP ++ A +G Sbjct: 15 RTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAAFGRF 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R++ RALR + + + ++ + ADG Sbjct: 75 P---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFSADG--- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 V + D L + + G ++ + + G +++ + + D Sbjct: 124 --------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T +I+ V+G E + S+ + +A + I K Q + Sbjct: 176 MDIMVAATYE-NIMMVEG--EMSEVSEAELLEAMKVAHEAIKVHCKAQME 222 >gi|153864819|ref|ZP_01997588.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS] gi|152145686|gb|EDN72412.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS] Length = 416 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ V GS L G+T L TL + I + G Sbjct: 37 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVTTLGTERDAQIIDALEGEYKE 96 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R +++V+ S + + + + Sbjct: 97 GFLLHYNFPPYCVGEVGRIGTPKRRELGHG----RLARRGVQAVMPTSEVFPYSVRLVSE 152 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + GA +AL D + +K VA I+ G++ Sbjct: 153 ITESNGSSSMATVCGASLALMDA-------------AVPIKAPVAGIAMGLIKEDEQFVV 199 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L AKD ++ + Sbjct: 200 LTDIMGDEDHLGDMDFKVAGTLEG-VTALQMDIKIDGITREIMETALAQAKDGRLHILSV 258 Query: 234 QKDVISNE 241 ++ Sbjct: 259 MDKALAKP 266 >gi|71908066|ref|YP_285653.1| polynucleotide phosphorylase/polyadenylase [Dechloromonas aromatica RCB] gi|123760455|sp|Q47D98|PNP_DECAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71847687|gb|AAZ47183.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Dechloromonas aromatica RCB] Length = 715 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 26/243 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGTNRDEQIIDALAGEYRD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNMPPYATGECGRVGTPKRREIGHG----RLAKRALLAVLPKPEDFSYSMRLVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D LK HVA I+ G++ Sbjct: 432 ITESNGSSSMASVCGGCLALLDAGV-------------PLKAHVAGIAMGLIKDGNRFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ L AK+ ++ L Sbjct: 479 LTDILGDEDHLGDMDFKVAGSTTG-ITALQMDIKIQGITKEIMQVALAQAKEARIHILNL 537 Query: 234 QKD 236 ++ Sbjct: 538 MQE 540 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 74/242 (30%), Gaps = 47/242 (19%) Query: 13 EISLTRR-VSKYAEGSCLVKFG------------DTHLLTTATLEEKVPMWIRNTKHGWI 59 ++++ V++ A G+ LV + + + Sbjct: 15 QVTIETGEVARQAGGAVLVSMEETVVLVTVVAAKNAK--------PGQDFFPLTVDYQEK 66 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 T G +P G KRE GR + R+I R +R + Q+I + Sbjct: 67 TYAAGRIP---GGFFKRE---GRPSEKETLTCRLIDRPIRPLFPDGFYNEVQVIATVMSL 120 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 + + A+ GA AL G + A G + G ++ Sbjct: 121 NPEIDSDIPALIGASAALA-------------ISGVPFNGPIGAARVGYIDGQYVLCPTL 167 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA----KDRIADLIKLQK 235 + +D T++ ++ +E S++ + + I + +L + Sbjct: 168 SQLKGSQLDLVVAGTEAAVLMV---ESEADQLSEEVMLGAVVFGHTEMQKAINAINELVE 224 Query: 236 DV 237 + Sbjct: 225 EA 226 >gi|291386759|ref|XP_002709750.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Oryctolagus cuniculus] Length = 784 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R IS + K GS L + G T +L T T + +++ I Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDRITTAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL V+ I Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAEKALYPVIPKDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSPVAGVAIGLVTKNNSEK---GDIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + +S Sbjct: 588 IMNKTLSKP 596 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 29/220 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+GS +V+ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE S + R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGS---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA VAL G V A+ GM+ G +V+ E S+ Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ++ IV ++ SAE Q F + + Sbjct: 213 TLNLVVAGAPKSQIVMLEASAENIL--QQDFCHAIKVGMK 250 >gi|282600904|ref|ZP_05980076.2| polyribonucleotide nucleotidyltransferase [Subdoligranulum variabile DSM 15176] gi|282570791|gb|EFB76326.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum variabile DSM 15176] Length = 759 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 92/248 (37%), Gaps = 35/248 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR N++R ++ + GS + G T +LT TL + +T++ Sbjct: 363 RVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDAQLMDDLSDTQYK 422 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G G R + RAL V+ + I + Sbjct: 423 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGNLAERALVPVLPDQSEFPYTIRCVSE 478 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYP--- 173 V+ ++G T A+I G+ +AL D +K VA ISCG++ G P Sbjct: 479 VLSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITDGDPLHG 525 Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-- 226 ++D+ ED D+D T G I +Q + + + L + Sbjct: 526 GRWMTMLDIQGVEDFHGDMDFKVGGTRRG-ITAIQMDIKVDGLTYEIVEEALEKCRKGRL 584 Query: 227 --IADLIK 232 + ++IK Sbjct: 585 YILDEIIK 592 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 27/226 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + A GS +V++GDT +L T E V + + + G + Sbjct: 66 RPFVVETGKMCGLANGSAMVRYGDTCVLCNVTMSEKPREGVDFFPLSVEFEEKLYAAGRI 125 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G+ ++RE GR G + R++ R +R + + + + D Sbjct: 126 P---GSFMRRE---GRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLDPDNSAE 179 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + GA +A+ G +A + G++ G +++ + D Sbjct: 180 ITGMNGASLAIAM-------------SDIPWNGPIAGVFVGLVDGEIVLNPTKEQREHSD 226 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + ++ IV ++ A + + I ++ Sbjct: 227 LSLTLAASEE-KIVMIEAGANE--VDEATMMEAIKAGHAEIKKMLA 269 >gi|332532415|ref|ZP_08408293.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332038058|gb|EGI74505.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 708 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R + + V GS + G+T L TATL + + T Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G + R + +V+ I + + Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHG----NLAKRGISAVMPTLTEFPYSIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL + +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGV-------------PIKASVAGIAMGLVKEDDKFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +Q+ L AK ++++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTAAG-ITALQMDIKIEGITQEIMQIALKQAKAARLHILEV 538 Query: 234 QKDVIS 239 + IS Sbjct: 539 MDEAIS 544 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLPR 68 ++L +++ A+G+ L GDT +L T + + +T Y R Sbjct: 15 VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQP---GQDFFPLTVNYQERMYAAGR 71 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR I R+I R +R + + Q+I + + Sbjct: 72 IPGGFLKRE---GRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEIQPDMV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G + G +++ E +D Sbjct: 129 AMIGTSAALAISGI-------------PFSGPIGASRVGYINGEYVLNPTLKELEESQLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E ++D + ++ +I ++ Sbjct: 176 LVVAGTDKAVLMV---ESEANVLAEDVMLGAVVYGHEQSQAIITAIEE 220 >gi|330950302|gb|EGH50562.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae Cit 7] Length = 701 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + NT G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLNTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 479 LTDILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|84515054|ref|ZP_01002417.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis SKA53] gi|84511213|gb|EAQ07667.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis SKA53] Length = 713 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 19/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +Q+R I + GS L G+T L TL + + G Sbjct: 320 RIDGRALDQIRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALTGMYKS 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RAL++V+ I I + Sbjct: 380 NFMLHYNFPPYSVGEVGRVSGPGRREIGHG----KLAWRALQAVLPAPTDFPYTIRIVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 + +++G + A++ G +++ D ++ + V++ Y ++ D Sbjct: 436 ITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVMEDD---------GSYAVLSD 486 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T++G I +Q + A + + L AK ++ Sbjct: 487 ILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPEIMKKALEQAKAGRLHILGEMSK 545 Query: 237 VI 238 + Sbjct: 546 AL 547 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 81/231 (35%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 18 LTLETGKVARQADGSVIATLGETSVMANVTFAKSQKPGQDFFPLTVHYQEKYYAAGKVP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KREA R + R+I R +R + ++++ C V+ DG Sbjct: 77 --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVPGF--KNEVLVMCTVLSFDG----- 124 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV- 187 V D + + + G + A G + G I++ + + + Sbjct: 125 ------VNDPDMIAMIAASAALTISGAPFMGPIGACRVGFVDGEYILNPEIDDMHNLRTK 178 Query: 188 -----DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D T ++ V+ +E +++ + A +I +I L Sbjct: 179 PEQRLDLVVAGTKDA-VMMVE--SEAYELTEEEMLGAVTFAHAQIQPVIDL 226 >gi|300871237|ref|YP_003786110.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli 95/1000] gi|300688938|gb|ADK31609.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli 95/1000] Length = 712 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 83/246 (33%), Gaps = 20/246 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 MR GR +++R IS + GS L G T L+ TL + + + +G Sbjct: 312 MRPDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + R+ +V+ I + Sbjct: 372 KTFMLHYNFPPFSVGEVGR----YGSPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVA 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 ++++++G + A I + ++L + + GY ++ Sbjct: 428 EILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGL----------ATYKDGYKVLT 477 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I Q + S L AK ++ + Sbjct: 478 DIQGVEDHLGDMDFKVAGTRKG-ITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIE 536 Query: 236 DVISNE 241 ISN Sbjct: 537 ATISNP 542 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 27/227 (11%) Query: 16 LTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71 L + K A GS ++ G+T +L T + K P + +T Y + G Sbjct: 15 LETGLLAKQAHGSVTLRLGNTTILATV-VAAKEPN--LESDFFPLTVNYNEKYYAGGKIP 71 Query: 72 -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 KREA + + I R+I R LR + QII + D T Sbjct: 72 GGFFKREA---KPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPT----- 123 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 D L + + G VAA+ G G I++ E ++ ++D Sbjct: 124 --------DALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELASSELDI- 174 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 V I+ ++G A S++ F + LA + I +Q ++ Sbjct: 175 IVAGSKDAILMIEGEARE--VSEEVFIGAIELAHKEMQKYIDMQNEM 219 >gi|312963078|ref|ZP_07777563.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens WH6] gi|311282589|gb|EFQ61185.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens WH6] Length = 701 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 20/167 (11%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + + Q++ AA+ Sbjct: 75 GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAM 131 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDA 189 G AL G + A +++ Y + +D Sbjct: 132 IGTSAALAISGI-------------PFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDM 178 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T ++ +E ++D + A D +I K+ Sbjct: 179 VVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQSVINAVKE 222 >gi|257453578|ref|ZP_05618868.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus SK60] gi|257449036|gb|EEV23989.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus SK60] Length = 713 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKHG 57 R+ GR +R + + V Y GS L G+T L T TL V M + TK Sbjct: 318 RIDGRDLQTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNMIDTLAGTKQD 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++++ S I I D Sbjct: 378 HFMLHYNFPSYSVGETGRDSGPKRREIGHG----RLARRGVQAMLPDSDRFPYVIRIVSD 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D LK VA I+ G++ G Sbjct: 434 ITESNGSSSMASVCGASLALMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 480 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G + +Q + + + L+ A ++ Sbjct: 481 LSDILGDEDHLGDMDFKVAGSANG-VTALQMDIKIEGITPEIMEKALHQAHAGRIHILNA 539 Query: 234 QKDVISN 240 +VIS Sbjct: 540 MNEVIST 546 Score = 56.3 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 31/174 (17%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128 G KRE GR R+I R +R + S I + VI +D A Sbjct: 74 GGYGKRE---GRPSEMETLTSRLIDRPIRPLFPESYFNE--IQVTATVISSDKKQDADIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL S G + A G + +++ ++ +D Sbjct: 129 AMIGTSAALA-------------ISSAPFNGPIGAARVGFINDEYVLNPNHEALKQSSLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T S ++ +E S+D + Q+ V+ + + Sbjct: 176 LVVAGTSSAVLMV---ESEAKELSEDQMLGAVLYGH--------AQQQVVIDAI 218 >gi|330807487|ref|YP_004351949.1| polyribonucleotide nucleotidyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375595|gb|AEA66945.1| Putative polyribonucleotide nucleotidyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 701 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G + A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPIGAARVAFHESTGYLLNPTYEQLKASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAVKE 222 >gi|301166788|emb|CBW26365.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax marinus SJ] Length = 709 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R++GR ++REI + ++ GS L G+T ++ T+ EK+ IR T+ Sbjct: 323 RIAGRGMTEVREIETEANLLEHVHGSSLFTRGETQVMAAVTIGGKHGEKMEDSIRGTEFQ 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R+ G + RA+++V+ + + C+ Sbjct: 383 KFYLHYNFPPFSVGEARGVRGVGRRELGHG----NLAERAVKAVMPSEEEFAYTTRVVCE 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V++++G + ++ A +AL D + VA I+ G++ Sbjct: 439 VMESNGSSSMGSVCSASMALMDAGV-------------PISNPVAGIAMGLITDGERFKV 485 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ + A++ ++ Sbjct: 486 LTDILGDEDHLGDMDFKVAGTVDG-ITAIQMDIKITGLTREIVEKSIEQAREGRLHILGE 544 Query: 234 QKDVISNE 241 IS + Sbjct: 545 MAKTISTK 552 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 29/231 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS-- 69 E+++ ++K A+GS LV T +L T +V + EY S Sbjct: 16 EVTVETGRLAKQADGSVLVSCNGTQVLVTVCSAHEV---KDGQDFFPLLVEYTEKFYSAG 72 Query: 70 --TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+I R LR + + + + +G Sbjct: 73 KFVGGFLKRE---GRPSTSETLNARLIDRPLRPLFPEGYMFDTVVSCNVLSYSDEGDAEV 129 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A GA AL G + G + G +++ + + Sbjct: 130 LAGLGASAAL-------------TISDIPFNGPIGTCKVGRVDGKLVLNPSHS--QWAES 174 Query: 188 DANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D V + I+ V+G E + + D I + +KL + + Sbjct: 175 DLEIAVAASADAILMVEG--EAKVVPEKEVLEAIYFGHDNIKEYVKLMEQM 223 >gi|326794274|ref|YP_004312094.1| polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea MMB-1] gi|326545038|gb|ADZ90258.1| Polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea MMB-1] Length = 702 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 97/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ + K GS L G+T + T TL + ++ + Sbjct: 315 RIDGRDNQTVRPINVEVGLLKKTHGSSLFTRGETQAIATCTLGTSRDAQISDGLAGENKD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R R+ R +++V+ I I + Sbjct: 375 SFMLHYNFPPYSVGECGR----MGGVGRREIGHGRLARRGVQAVLPSEDEFPYTIRIVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +++ D LK VA I+ G++ G+ + Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGV-------------PLKAPVAGIAMGLVKEDDGFAV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L A D +++ Sbjct: 478 LTDILGDEDHLGDMDFKVAGTEEG-ITALQMDIKIEGINEEIMDIALTQAMDARKYILRE 536 Query: 234 QKDVIS 239 VI Sbjct: 537 MATVIG 542 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 28/233 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ L GD +L T + + + + T G +P Sbjct: 15 VTLETGRIARQATGAVLCTLGDAQVLATVVGAKTAKPGQDFFPLSVHYQERTYAVGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+I R +R + + Q++ D Sbjct: 74 --GGFLKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTDLDADIP 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187 A+ AL G + A G +++ E + Sbjct: 129 AMLATSAALAISGI-------------PFNGPIGAARVGFNDEEGYLLNPSNSELDGSLL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T ++ +E ++D + A + I + +S Sbjct: 176 DMVVAGTKDAVLMV---ESEAQELTEDEMLGAVLYAHKEMQTAITAINEFVSE 225 >gi|313884899|ref|ZP_07818651.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola ACS-139-V-Col8] gi|312619590|gb|EFR31027.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola ACS-139-V-Col8] Length = 698 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 92/241 (38%), Gaps = 27/241 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ ATL E ++ + + Sbjct: 317 VRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVATLAPLREHQIIDGLGTEDY 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + + R+ G + RAL+ V+ I + Sbjct: 377 KRFMHHYNFPPYSVGETGRMGSPGRREVGHG----ALGERALKHVIPSEEEFPYVIRLVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICGSTLAMMDAGI-------------PIKAPVAGIAMGLVMDDDADY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + ++ L AK ++ Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTAKG-ITALQMDIKIQGITEQILREALAQAKVARMQIL 538 Query: 232 K 232 Sbjct: 539 D 539 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67 R + + V+K A G+ LV++G+T +L TA +K + + G +P Sbjct: 13 RPLQVEIGQVAKQASGAVLVRYGETVVLATAVGSKKAGTGDFFPLTVNYEEKMYAVGKVP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + QI+ + D Sbjct: 73 ---GGFLKRE---GRPSEHATLTARLIDRPIRPMFPDGVRNEVQIVATVLSVDQDNSPEM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ GA +AL G +A + + G I++ + +T ++ Sbjct: 127 AAMFGASLAL-------------GVSDVPFDGPIAGVKVARVDGQLIINPSVDQLATTEI 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D T + I V+ A A + L + I +L+ Q+++IS Sbjct: 174 DLTVAGTKTA-INMVESDA--AEVPEAEMLEALLFGHEAIKELVAFQEEIIS 222 >gi|70734341|ref|YP_257981.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens Pf-5] gi|123762225|sp|Q4KIF2|PNP_PSEF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|68348640|gb|AAY96246.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens Pf-5] Length = 703 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 318 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 377 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 378 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 434 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 480 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 481 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEA 532 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 76/230 (33%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G + A +++ Y + + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPIGAARVAFHESTGYLLNPTYEQLAASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T+ ++ +E ++D + A D +IK K+ Sbjct: 176 LDMVVAGTEEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQSVIKAVKE 222 >gi|239994336|ref|ZP_04714860.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii ATCC 27126] Length = 724 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R + + + GS L G+T L ATL + + + + Sbjct: 335 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLGTERDAQMIDELQGKRDS 394 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R +++V+ + + + Sbjct: 395 RFMLHYNFPPYCVGETGMIGSPKRREIGHG----RLAKRGIQAVMPSEEEFPYVVRVVSE 450 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ G +AL D +K VA I+ G++ + + Sbjct: 451 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKSDDNFVV 497 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L AK+ ++ + Sbjct: 498 LSDILGDEDHLGDMDFKVAGTTEG-ITALQMDIKIEGITKEIMQIALKQAKEARLHILNV 556 Query: 234 QKDVISNE 241 + I Sbjct: 557 MDEAIGGH 564 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 79/228 (34%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + L DT +L T +++ + +T Y + G Sbjct: 36 VTLETGVIARQATAAVLASMDDTSVLVTVVGKKEA---KADQDFFPLTVNYQEKAYAAGK 92 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR I R+I R +R + Q+++ D T Sbjct: 93 IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFKNEVQVVVTVMSANPDIPTDII 149 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G G I++ E + ++D Sbjct: 150 SMIGTSAALAISGI-------------PFNGPIGAARVGFSNGEYILNTRAEEQAESELD 196 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+ G ++ V+ +E + S+D + +++ ++ + Sbjct: 197 LVVAGTE-GAVLMVE--SEASVLSEDTMLGAVMFGHEQMQTVVNAVNE 241 >gi|226946303|ref|YP_002801376.1| polynucleotide phosphorylase/polyadenylase [Azotobacter vinelandii DJ] gi|259534109|sp|C1DFK5|PNP_AZOVD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226721230|gb|ACO80401.1| polyribonucleotide nucleotidyltransferase [Azotobacter vinelandii DJ] Length = 702 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R + + V GS L G+T L ATL + + Sbjct: 317 RIDGRDNRTVRPLKIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQVLDTLEGERKD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R +++++ + + + Sbjct: 377 SFMLHYNFPPFSVGE-CGRMGSAGR---REIGHGRLARRGVQAMLPKDDSFPYTVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T +G + +Q + +++ LN A + Sbjct: 480 LTDILGDEDHLGDMDFKVAGTAAG-VTALQMDIKIQGITEEIMEIALNQALEA 531 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 20/167 (11%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + + Q+I A++ Sbjct: 75 GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVICTVLSTSKKTDPDIASM 131 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDA 189 G AL G + A G +++ Y + +D Sbjct: 132 IGTSAALAVSGI-------------PFNGPIGAARVGFHEETGYLLNPSYEQLKASRLDM 178 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+S ++ V+ AE ++D + A + +I+ K+ Sbjct: 179 VVAGTESA-VLMVESEAEE--LTEDQMLGAVLFAHEEFQAVIQAIKE 222 >gi|89056519|ref|YP_511970.1| polynucleotide phosphorylase/polyadenylase [Jannaschia sp. CCS1] gi|123094095|sp|Q28K17|PNP_JANSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|88866068|gb|ABD56945.1| Polyribonucleotide nucleotidyltransferase [Jannaschia sp. CCS1] Length = 706 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R+I +V GS L G+T L TL + HG + Sbjct: 318 RIDGRALDEVRDIVSETKVLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + + + + Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + VL+ S G+ + D+ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLED---DGSYGI-----LTDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A +Q+ L AK ++ Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITQEIMEKALEQAKAGRLHILAEMAKA 544 Query: 238 ISN 240 ++ Sbjct: 545 VTE 547 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ + + + + + G +P Sbjct: 16 LTLETGRVARQADGSVIATLGETSVMANVTFAKSPKPGMDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGFKNET--LVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182 A+ A AL +G +A G G I++ + + Sbjct: 128 MVAMIAASAALTISGA-------------PFRGPIAGCRVGFEDGEYILNPEIDDMHDLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + + V+ + V + S E ++ + A D I +I L Sbjct: 175 NNPEQRLDLVVAGTKDAVMMVES-EAYELTEAEMLGAVKFAHDSIQPVIDL 224 >gi|15616978|ref|NP_240191.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681731|ref|YP_002468117.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682286|ref|YP_002468670.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471431|ref|ZP_05635430.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386962|sp|P57454|PNP_BUCAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782710|sp|B8D9F8|PNP_BUCA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782711|sp|B8D7R0|PNP_BUCAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|25311798|pir||E84973 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) [imported] - Buchnera sp. (strain APS) gi|10039043|dbj|BAB13077.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622019|gb|ACL30175.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624574|gb|ACL30729.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086110|gb|ADP66192.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086683|gb|ADP66764.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087269|gb|ADP67349.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 707 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + + GS L G+T L + TL + + Sbjct: 315 RIDGREKDMIRALDVRTGILPRTHGSALFTRGETQSLVSVTLGTSRDAQNLDELLGDRID 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R+L +V+ I + + Sbjct: 375 NFLFHYNFPPYSVGEIGMVGSPKRREIGHG----RLAKRSLLAVMPTLENFPYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA IS G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGISMGLVKEGNQHVL 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + + + + LN A+ ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGTEEG-ITALQMDMKIEGITNEIIHSALNEARLARLHILNV 536 Query: 234 QKDVISN 240 ++ Sbjct: 537 MNQALNE 543 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68 I+L V + A + + +T + T ++K+ + + T G +P Sbjct: 16 ITLETGVIARQANAAVMASMDETAVFVTVVGQKKIHTGQKFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR R+I R LR + L QII + Sbjct: 75 --GGFFRRE---GRPSENEILTARLIDRPLRPLFPKKFLNEIQIIATVVSVNPQINPDII 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 +I GA AL G V A G + I++ + +D Sbjct: 130 SIIGASAALSLSGI-------------PFYGPVGAARVGYINNQYILNPISDDMKNSSLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T + I+ V+ AE S++ + Q+ V+ N + Sbjct: 177 LVVSGTQNA-ILMVE--AESKILSEEKILGAIIFGHQ--------QQQVVINNI 219 >gi|302335751|ref|YP_003800958.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084] gi|301319591|gb|ADK68078.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084] Length = 743 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 30/247 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------TK 55 R+ GR ++R + + GS L + G T +L+ ATL + W R Sbjct: 319 RVDGRSATEVRPLMVKPDYLPRVHGSGLFQRGQTQVLSIATLG-MLNEWQRLDTIEPVDG 377 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P TG + A R+ G + RAL V+ I + Sbjct: 378 KRYIH-HYNFPPFCTGETGRMGAPKRREIGHGS----LAERALLPVIPSEDEFPYAIRVV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V++++G + A+ G+ +AL D + V+ ++ G++ Sbjct: 433 SEVMESNGSSSMASTCGSTLALMDAGVPLAR-------------PVSGVAMGLIQEEGKT 479 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + + + L A + ++ Sbjct: 480 VVLTDIQGLEDFLGDMDFKVCGTVKG-ITAMQMDNKATGLTPEILRQALMQAHEGRMHIL 538 Query: 232 KLQKDVI 238 + + I Sbjct: 539 EAMLEQI 545 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 21/167 (12%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G +KREA R ++ R+I R +R QI+ V T ++ Sbjct: 73 GGYLKREA---RPSEKATLTARLIDRPIRPSFPEGFRNEVQIVAMPLVADQVNPVDTISV 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVD 188 GA A+ +G +A + G + G IV+ Y E D+D Sbjct: 130 MGASAAM-------------TVGGVPFEGPLACVRVGRDVETGEFIVNPSYEERDASDLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 + S + + A S+D A + ++ IA + Q+ Sbjct: 177 LE--LAGSATFISM-LEAGAKEVSEDDMLAAMAFGQEAIAAFCEEQR 220 >gi|187611319|sp|A4WWP0|PNP_RHOS5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 714 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 94/248 (37%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I V GS L G+T L TL I + HG + Sbjct: 318 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP- 173 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGKWA 480 Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + L AKD ++ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPAIMEQALAQAKDGRMHILG 539 Query: 233 LQKDVISN 240 +S+ Sbjct: 540 EMSKALSS 547 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ V+ D Sbjct: 75 --GGFFKREA---RPSEKETLTSRLIDRPIRPLFVDGF--KNEVLLIVTVLSHDLVNEPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182 A+ A AL G + A G G +++ D + Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E S+ + + + +I + Sbjct: 175 ENPEQRLDLVIAGTKDAVMMVES-EAYELSEAEMLGAVKFGHEAMQPVIDM 224 >gi|109897953|ref|YP_661208.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas atlantica T6c] gi|123064734|sp|Q15VD4|PNP_PSEA6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|109700234|gb|ABG40154.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas atlantica T6c] Length = 703 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR +R + + + GS L G+T + ATL + + + +G + Sbjct: 314 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQMIDGLNGKVDS 373 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R +++V+ + + + Sbjct: 374 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIQAVMPSEKEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKNDENFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +Q+ L AK+ ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEG-ITALQMDIKIEGITQEIMQVALKQAKEARLHILGV 535 Query: 234 QKDVISNE 241 IS Sbjct: 536 MDQAISGH 543 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 27/225 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT +L + + + + T G +P Sbjct: 15 VTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + QII+ + T Sbjct: 74 --GGFFKRE---GRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEIPTDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G V A G G +++ E +D Sbjct: 129 SLIGTSAALA-------------ISGMPFNGPVGAARVGYTDGQYVLNTRTSELEISQLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 T G ++ V+ AE S+D + +++ ++ Sbjct: 176 LVVAGTK-GAVLMVESEAE--VLSEDVMLGAVMFGHEQMQTVVNA 217 >gi|78185360|ref|YP_377795.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CC9902] gi|123580765|sp|Q3AV44|PNP_SYNS9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78169654|gb|ABB26751.1| RNA binding S1 [Synechococcus sp. CC9902] Length = 721 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 28/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A GS LV+ GDT +L TAT + +Y Sbjct: 13 REIRLTTGRFAPQAGGSVLVECGDTAVLVTAT----RSKGRDGIDFLPLICDYEERLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 R G+ ++REA R R+ R+I R +R + Q++ C + + Sbjct: 69 GRIPGSYMRREA---RPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVPSD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+TGA +A G +AA+ G+L +++ Y E D Sbjct: 126 VLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREIERGD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T G +V V+ A + + ++ + I +LIK Q+ ++ + Sbjct: 173 LDLVVAGTADG-VVMVEAGANQ--LPEGDVIEAIDFGYEAIQELIKAQETLLKD 223 Score = 94.8 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 94/250 (37%), Gaps = 29/250 (11%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55 R+ GR +++R+IS V + GS L + G T +L+TATL NT+ Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G + R+ G + RA+ V+ + + Sbjct: 383 KLYLH-HYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPEKDTFPYVVRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 438 SEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGKDI 484 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D ++ G I +Q + +N A+ ++ Sbjct: 485 KILTDIQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLPVKVMAEAVNQARPARLHIL 543 Query: 232 KLQKDVISNE 241 + + I Sbjct: 544 EKMLEAIDKP 553 >gi|294788877|ref|ZP_06754118.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri ATCC 29453] gi|294483359|gb|EFG31045.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri ATCC 29453] Length = 703 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 94/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ + + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFNYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+ + A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGVAMGLILEDNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ + Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILTQMQAA 541 Query: 238 ISNE 241 + Sbjct: 542 VEGP 545 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 35/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 15 QVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDVKEGQDFFPLTVDYFERTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI---IIDCDV-IQADG 123 G KRE+ +Q + R+I R +R + QI +I CD I +D Sbjct: 75 ---GGFFKRES---KQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSD- 127 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+ GA AL G + A G + +++ + Sbjct: 128 ---IPAMIGASAALV-------------LSGVPFAGPIGAARVGYINDTYVLNPTKHQMH 171 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T+S ++ +E +D + +++ +I + Sbjct: 172 RSQLDLVVAGTESAVLMV---ESEANILPEDVMLGAVVYGHEQMQTVIAAINE 221 >gi|168184618|ref|ZP_02619282.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum Bf] gi|237795848|ref|YP_002863400.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum Ba4 str. 657] gi|259534115|sp|C3L0B0|PNP_CLOB6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|182672277|gb|EDT84238.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum Bf] gi|229263835|gb|ACQ54868.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum Ba4 str. 657] Length = 702 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 86/244 (35%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R GR N++R IS + G+ L G T ++T AT + ++ I + Sbjct: 312 RPDGRAFNEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + + I D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + A S L AK ++ K+ Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIKEC 539 Query: 238 ISNE 241 I Sbjct: 540 IPEP 543 Score = 81.3 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 88/236 (37%), Gaps = 31/236 (13%) Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64 R++ + + A + +GDT ++ A+ E + + + ++ G Sbjct: 12 RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G +KRE G+ +S R I R LR + QI+ ++ D Sbjct: 70 KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI G+ +AL S VAA+S G++ G I++ + Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T ++ V+ + ++ ++ + + +++ Q++ ++ Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIVAFQEEAVAK 223 >gi|313236011|emb|CBY11338.1| unnamed protein product [Oikopleura dioica] Length = 271 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 90/247 (36%), Gaps = 22/247 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +++R + L + V+ A+ S +++ G+T ++ T E + K G + Sbjct: 28 VRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKVICGITA-ETIKPAAATPKDGSFS 86 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG------SRQIII 114 + + N A +G +Q + + L+ V + + L + + I Sbjct: 87 VNFEFSSVCSPN-----AKAGPPNEVAQTMSIFLDGILKQVFETNQLCIEPDLLAWTLFI 141 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV---------LKGHVAAIS 165 D ++ DG AA+ +L D + V LK + + Sbjct: 142 DVYCLEDDGNVTDAAMMSVISSLRDLKLPEITIDEETAKPVVNLEKQSPVDLKMFPVSTT 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 G G ++D E V ++ G ++ S + SQ+ A + +K Sbjct: 202 YGEFSGILLLDPTARETELGSSPITVVCSEKGALLCFNRSG-GSPLSQEQVAAAIENSKR 260 Query: 226 RIADLIK 232 R + + Sbjct: 261 RSSTIYD 267 >gi|260889890|ref|ZP_05901153.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii F0254] gi|260860496|gb|EEX74996.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii F0254] Length = 699 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GRQ ++R I + GS L G+T L ATL +E++ + + Sbjct: 321 RADGRQTTEIRPIDVEIDTLPVPHGSALFTRGETQALVVATLGSKEDEQIIDGMEDETRK 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G A R+ G + RAL+ V+ + + + + Sbjct: 381 KFFLHYNFPPYSVGEAGFMRAPGRRELGHG----NLAERALKYVMPETDKFPYTVRLVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G +AL +K VA I+ G++ Sbjct: 437 ITESNGSSSQASICGGSLALMAAGV-------------PIKSTVAGIAMGLIKEGETFTV 483 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A + +I Sbjct: 484 LTDIQGLEDHLGDMDFKVAGTRDG-ITAIQMDIKIEGITREIMEIALRQALEGRLFIIDK 542 Query: 234 QKDVISNE 241 + VIS Sbjct: 543 MEAVISEP 550 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 83/235 (35%), Gaps = 31/235 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +I ++ +++ A GS +V+ G T LL TAT + E + + G P Sbjct: 15 KIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLTVDYIEKFYASGKFP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G +KRE + G I R+I R +R + L + I V+ D Sbjct: 75 ---GGFIKRET---KPGTDEVLISRLIDRPIRPLFPEGFL--NAVHIVVTVLSYDEVNYP 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A G AL G VA ++ G + G I++ + Sbjct: 127 ENLATIGVSAAL-------------GLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLES 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ + T + V+ A+ S++ + ++I ++ Q + Sbjct: 174 EIQLSVAGTKDA-VTMVEAGAKE--VSEEVMLEAIMFGHEKIKEICAEQDKFLEQ 225 >gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii RW1] gi|187611293|sp|A5VCY9|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii RW1] Length = 774 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I A GS L G+T ++T TL K + + +G Sbjct: 314 RIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKESEQMIDGLNGLRYE 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G ++ RAL +V+ I + D Sbjct: 374 HFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHAVLPTKEEFPYTIRLTSD 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +A+ D ++ + + +L+G A+ I D+ Sbjct: 430 ITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAV---------ISDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ F L AK+ A ++ Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITEEIFKTALLQAKEGRAHILGEMAKA 539 Query: 238 I 238 + Sbjct: 540 L 540 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 29/226 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++L V++ A+G+ L G+T +L T V +T Y S+G Sbjct: 16 LTLETGRVARQADGAVLATLGETVVLCAVTAARSV---KEGQDFFPLTVHYQEKYFSSG- 71 Query: 73 RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128 R+ +G +E + R+I R +R + I + V+ DG Sbjct: 72 RIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNE--INVIAQVLSYDGENEPDIL 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ A AL G + A G G +++ + + D+D Sbjct: 130 AMIAASAAL-------------TISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLD 176 Query: 189 ANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 T D+ +VE +E S++ + A D+IK Sbjct: 177 LVVAATHDAVMMVE----SEAKELSEEVMLGAVMFAHKASQDVIKA 218 >gi|299133369|ref|ZP_07026564.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2] gi|298593506|gb|EFI53706.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2] Length = 714 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 18/242 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR +R I V A GS L G+T L TL + T Sbjct: 315 LRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYK 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+ V+ + + Sbjct: 375 ETFLLHYNFPPFSVGETGR----IGSPGRREIGHGKLAWRAIHPVLPAHHEFPYTLRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A + G+ +AL D ++ + + +L+G A+ + D Sbjct: 431 EITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D TD G + +Q + A +++ L AKD ++ Sbjct: 482 ILGDEDHLGDMDFKVAGTDKG-VTSLQMDIKIAGITEEIMKIALTQAKDGRIHILGEMAK 540 Query: 237 VI 238 + Sbjct: 541 AL 542 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 38/236 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T ++ T T +E + + T G + Sbjct: 14 RPLKLETGKVARQADGAVIATYGETVVIATVVSAKTPKEGIDFLPLTVNYQEKTFAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFIKGYRCDTQVIVTTLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G + A + I++ E + Sbjct: 128 IVAMVAASAAL-------------TLSGVPFMGPIGAARVAFVNNEFILNPTLDEMADTQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFF----AMLNLAKDRIAD 229 +D T ++ V+ A+ F HF A+++LA+ + Sbjct: 175 LDLVVAGTADA-VLMVESEAKELPEEVMLGAVMFGHRHFQPVIKAIIDLAEKAAKE 229 >gi|56963987|ref|YP_175718.1| polynucleotide phosphorylase/polyadenylase [Bacillus clausii KSM-K16] gi|81366005|sp|Q5WFU8|PNP_BACSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56910230|dbj|BAD64757.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii KSM-K16] Length = 710 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R +S ++ GS L G T L T A + +V + + Sbjct: 313 IRPDGRGVDEIRPLSSQIKLLPRTHGSGLFTRGQTQALSVCTLGALGDVQVLDGLGIEET 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL V+ I + Sbjct: 373 KRFMHHYNFPQFSVGETGPIRAPGRREIGHG----ALGERALEQVIPSEQEFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKQGEHMT 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T +G + +Q + + +++ L AK ++ Sbjct: 476 VLTDIQGMEDALGDMDFKVAGTANG-VTALQMDIKISGINREVLEQALEQAKQGRMKILS 534 Query: 233 LQKDVISNE 241 + I Sbjct: 535 NMMEAIDKP 543 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R +S+ ++K A G+ LV++GDT +L TA+ E K +P + + G +P Sbjct: 15 RTLSVEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + Q+I D Sbjct: 75 ---GGFIKRE---GRPSERAILTSRLIDRPIRPLFPDGFRNDVQVISIVMSSDQDASPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ + + D+ Sbjct: 129 AAMIGSSLALC-------------VSDIPFEGPIAGVTVGRINGEFIMNPTPAQLAESDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D T I V+ A+ +D + + I +I Q+ V+ Sbjct: 176 DLTVAGTKEA-INMVEAGAKEVP--EDVMLEAILAGHENIKKMIAFQEKVVE 224 >gi|77457010|ref|YP_346515.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens Pf0-1] gi|123606003|sp|Q3KI80|PNP_PSEPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|77381013|gb|ABA72526.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens Pf0-1] Length = 701 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++ +++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVSAMLPAADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 74/230 (32%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G + A +++ Y + + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPIGAARVAFHESTGYLLNPTYEQQAASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSDAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAVKE 222 >gi|160932224|ref|ZP_02079615.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753] gi|156868826|gb|EDO62198.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753] Length = 733 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 83/228 (36%), Gaps = 26/228 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +QMR ++ + GS + G T ++T ATL + + Sbjct: 315 RVDGRAMDQMRPLAAEVGLLPRVHGSGMFTRGQTQVITAATLGPVSDQQLLDGIDGEEFK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y S G R+ G + RAL V+ + + Sbjct: 375 RYMHQYNFPSYSVGETRPSRGPGRREIGHG----ALAERALLPVIPPVEEFPYAYRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 V+ ++G T A+I G+ +AL D +K VA ISCG++ G Sbjct: 431 VVSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITEGERWMT 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 +VD+ ED D+D T G I +Q + + + L Sbjct: 478 MVDIQGLEDFFGDMDFKVAGTHEG-ITAIQMDLKIDGLTPEIVKEALE 524 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 27/229 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + A G+C V++GDT + T + + + + G + Sbjct: 15 RPLKIETGKIAQLANGACFVRYGDTVVNVAVTASAKPRDGIDFFPLSVDFEEKLYAVGKI 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G+ +KRE GR ++ R+I R +R + ++ + D Sbjct: 75 P---GSFLKRE---GRPSDKAILTSRVIDRPIRPLFPKDMRNDVSVVCTVMSVDPDCSPE 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G AL KG ++ +S G + G +++ + Sbjct: 129 IAAMVGTSAALS-------------ISDIPWKGPISGVSVGYVDGEYVINPTAEQREKSQ 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 + TD I ++ A S + + + + +I+ K Sbjct: 176 MAVTVASTDKL-IAMIEAGANE--VSDEVMYNGIMAGHEANQKIIEFIK 221 >gi|327262753|ref|XP_003216188.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Anolis carolinensis] Length = 765 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 18/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPM-----WIRN 53 R GR +R IS + K GS L + G T +L T +LE V I Sbjct: 338 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSVKSDLITTAISG 397 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K +++ R+ G + +AL+ V+ I Sbjct: 398 IKEKNFMLHYEFPPYATNEIGKISSMNRRELGHG----ALAEKALKPVIPNEF--PFTIR 451 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + L + G + Y Sbjct: 452 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVG--LVTSPNSEKNGDIENYR 509 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 510 LLTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPLKIVMEAIQQATVAKREILQ 568 Query: 233 LQKDVISNE 241 + I Sbjct: 569 IMNKTIGKP 577 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTT-ATLEEKVPMWIRNTKHGWITAEYGMLPRS 69 R++ ++ ++A+GS +V+ GDT ++ T + + P + +Y + Sbjct: 34 RKLEISSGKLARFADGSAVVQLGDTSVMVTAVSKTKPSPSQFMP-----LVVDYRQKAAA 88 Query: 70 TGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G R+ + G +EI R+I R++R + QI+ C+++ DG Sbjct: 89 AG-RIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYYYDTQIL--CNLLAVDGVNDP 145 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA AL G + A+ G++ G +V+ E S+ Sbjct: 146 EVLAINGASAAL-------------TLSDIPWNGPIGAVRVGLIDGEVVVNPTRKEMSSS 192 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 +D +V ++ +AE Sbjct: 193 TLDLIVSSAPRSQVVMLEAAAEN 215 >gi|303326248|ref|ZP_07356691.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. 3_1_syn3] gi|302864164|gb|EFL87095.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. 3_1_syn3] Length = 747 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 93/244 (38%), Gaps = 19/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + V A GS L + G+T L ATL ++ G +T Sbjct: 324 RIDGRDTKSVRPIQIQTGVLPRAHGSALFRRGETKSLVIATLGSSTDEQRMDSLTGDVTK 383 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + ML + E R R + ++LR ++ A + + + +++ Sbjct: 384 RF-MLHYNFPPYCVGEVKPVRVSRREIGHGALAEKSLRPILPADADFPFTLRVVAETMES 442 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---PIVDL 177 +G + AA+ G ++L D + VA ++ G++ G + D+ Sbjct: 443 NGSSSMAAVCGGSLSLMDAGV-------------PVSAPVAGVAMGLIKEGEKFIVLTDI 489 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED+ D+D T G + VQ + + D A + A++ ++ Sbjct: 490 LGDEDALGDMDFKIAGTADG-VTGVQMDIKITGLTTDIMRAAMRQAREGRLHILAEMARA 548 Query: 238 ISNE 241 I+ Sbjct: 549 IAEP 552 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 77/217 (35%), Gaps = 26/217 (11%) Query: 22 KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 A G+ ++ G T +L T LE + ++ G +P G+ +RE Sbjct: 29 NQAHGAVWMQCGGTVVLVTVCSQPLEFDKGFFPLTVEYSEKMYAAGRIP---GSFFRREI 85 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 GR R + R+I R +R + Q++ + + A+TGA AL Sbjct: 86 --GRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVISADQENESDVLALTGASAAL- 142 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS-G 197 +G VA G + G +++ + + D N + S Sbjct: 143 ------------MVSPLPFEGPVAGGRIGRVNGQFVLNPSF--EQQAQSDLNILFAASRD 188 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + V+G A S+D L+ + I LI Q Sbjct: 189 ALTMVEGDAR--FLSEDVIIEALDWGRKEIQPLIDAQ 223 >gi|212703635|ref|ZP_03311763.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098] gi|212672930|gb|EEB33413.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098] Length = 750 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 27/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +R I + V A GS + + G+T L TL + G +T Sbjct: 322 VRIDGRDTKTVRPIQIQTSVLPRAHGSAIFRRGETKSLVVTTLGSSTDEQRMGSLSGDVT 381 Query: 61 ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G E R R + ++LR V+ A + + Sbjct: 382 KRFMLHYNFPPFSVG-----EVKPVRVSRREIGHGALAEKSLRPVMPADADFPFTVRVVS 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 + ++++G + AA+ G ++L D + VA ++ G++ Sbjct: 437 ETVESNGSSSMAAVCGGCLSLMDAGI-------------PISAPVAGVAMGLIKEGDKFI 483 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + VQ + + D + A + ++ Sbjct: 484 VLTDILGDEDALGDMDFKIAGTAEG-VTGVQMDIKITGLTTDIMRQAMQQAHEGRLHILA 542 Query: 233 LQKDVISNE 241 + Sbjct: 543 EMAKALPEP 551 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 79/227 (34%), Gaps = 27/227 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68 EI ++ A G+ V+ G T +L T LE + ++ G +P Sbjct: 19 EIIFETGRLANQAHGAVWVQCGGTVVLVTVCSQPLEFDKGFFPLTVEYSEKMYAAGRIP- 77 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R + R+I R +R + Q++ + + Sbjct: 78 --GSFFRREI--GRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVISADQENESDVL 133 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+TGA A+ +G VA G + G +++ + E D Sbjct: 134 ALTGASAAV-------------MLSPLPFEGPVAGGRIGRIDGQFVLNPTFEEQERS--D 178 Query: 189 ANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 N V S + V+G E +D L + I LI Q Sbjct: 179 LNIVFAASRDALTMVEG--EATFVPEDVIIDALEWGRKEIQPLIDAQ 223 >gi|83589904|ref|YP_429913.1| polynucleotide phosphorylase/polyadenylase [Moorella thermoacetica ATCC 39073] gi|123524642|sp|Q2RJL9|PNP_MOOTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83572818|gb|ABC19370.1| Polyribonucleotide nucleotidyltransferase [Moorella thermoacetica ATCC 39073] Length = 747 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R+ GR ++R I+ V GS L G+T +LT TL I + + Sbjct: 330 IRVDGRTLEEIRPITCEVGVLSRTHGSGLFTRGETQVLTVTTLGPISDEQILDDLGVDES 389 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RAL ++ I + Sbjct: 390 KRYMHHYNFPPYSVGEARPIRAPGRREIGHG----ALAERALEPMIPSEEEFPYAIRLVS 445 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V+ ++G T ++ G+ ++L D +K VA ++ G++ Sbjct: 446 EVLGSNGSTSMGSVCGSTLSLMDAGV-------------PIKAPVAGVAMGLVKENDQVA 492 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + A + L A+ Sbjct: 493 ILTDIQGLEDALGDMDFKVAGTKKG-ITALQMDIKIAGIDRSILERALEQARRG 545 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 30/227 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R+++L ++K A G+ +V +G T +L TAT E + + + G + Sbjct: 14 RDLTLETGRLAKQAGGAVMVSYGGTMVLVTATASEEPREGIDFFPLTVDYEERLYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + ++ + D Sbjct: 74 P---GGFIKRE---GRPSEKAILSARLIDRPIRPLFPKFYRNDVHVVATVMSVDQDCPPN 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A I GA AL G + A+S G++ P+++ EDS Sbjct: 128 VAGIIGASAALMLSAI-------------PFAGPIGAVSVGLIDNRPVINPTLEEDSRSS 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ T + I+ V+ A+ + ML ++ ++ Sbjct: 175 LNLTVAGT-ANAIMMVEAGAKEVP---EDL--MLECIMQGHEEIKRI 215 >gi|305664512|ref|YP_003860799.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp. HTCC2170] gi|88708529|gb|EAR00765.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp. HTCC2170] Length = 737 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 20/230 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56 +RL GR+ +++R I GS + G+T L T TL + Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSRDANKIDMPSHEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + RAL+ +V + + Sbjct: 377 ENFYLHYNFPPFCTGEARPLRGTSRREVGHG----NLAQRALKGMVPED--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +A+ D M + + + G A+ + D Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGVQMTRPVSGIAMGLISDGDRYAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED D+D T G I Q + S + L A++ Sbjct: 482 ILGDEDHLGDMDFKVTGTSEG-ITACQMDIKIKGLSYEILVNALKQAREG 530 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REIS+ K A GS +V+ G LL T + V + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQADVDFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I ++ D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMI--QLMSHDENV-- 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + + + + + + ++ G + G +++ + D+ Sbjct: 126 ---------MPEAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFVINPTRAQLEESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + + + ++ V+G E S++ + A + I I Q Sbjct: 177 EM-MIGASADSVMMVEG--EMDEISEEEMADAIKFAHEAIKVQIAAQ 220 >gi|307183198|gb|EFN70107.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial [Camponotus floridanus] Length = 689 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 17/249 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52 +R GR + +R+IS + GS + + G T ++ T L+ + + M I Sbjct: 276 VRCDGRSPDGLRDISCQVDLFNPLHGSAVFQRGQTQVMCTVALDSLESALKMDAMSMLIS 335 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K Y P +T GR G R + +ALRS++ I Sbjct: 336 GVKEKNFFLHYEFPPYATNE----TGHVGRIGRREMGHGALAEKALRSILPKD--YPFTI 389 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A + G +AL D + + + V K + Sbjct: 390 RLTSEVLESNGSSSMATVCGGSLALLDAGIPISSSAAGVAIGLVTKYNETNTDIDKY--K 447 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G +Q + L A ++IK Sbjct: 448 ILTDILGIEDYLGDMDFKIAGTKRG-FTALQADVKIPGVPLKIIMECLYQAIAAKREIIK 506 Query: 233 LQKDVISNE 241 + DVI Sbjct: 507 IMNDVIRTP 515 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 25/176 (14%) Query: 69 STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124 + R+ + G EI R+I R++R + I C+++ DG Sbjct: 27 AAAGRIPTNFLRRELGPTENEILTSRVIDRSIRPLFPEGFYYDT--HIMCNMLAVDGIND 84 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI GA AL G V AI GM+ I++ + Sbjct: 85 PDVIAINGASAALS-------------ISDIPWNGPVGAIRIGMIDNEFIINPTRRQIQD 131 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKD 236 ++ T IV ++GSA + + L +++ LQK Sbjct: 132 SILNMIVTATKHNLIVMLEGSANEIL--EQDLKKAIKLGVKECQNIVNAIANLQKA 185 >gi|182680095|ref|YP_001834241.1| polyribonucleotide nucleotidyltransferase [Beijerinckia indica subsp. indica ATCC 9039] gi|257096681|sp|B2ICY4|PNP_BEII9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|182635978|gb|ACB96752.1| Polyribonucleotide nucleotidyltransferase [Beijerinckia indica subsp. indica ATCC 9039] Length = 715 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 18/242 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR +R I + A GS L G+T L ATL + + G Sbjct: 317 IRIDGRDVKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQLIDNLEGTYR 376 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+ ++ A I + Sbjct: 377 ERFLLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAIHPMLPTPAEFPYTIRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A + G+ +AL D ++ + + +L+G A+ + D Sbjct: 433 EITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + +++ L AK+ ++ Sbjct: 484 ILGDEDHLGDMDFKVAGTEEG-ITSLQMDIKITGINEEIMRVALGQAKEGRLHILGEMAK 542 Query: 237 VI 238 I Sbjct: 543 AI 544 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 77/238 (32%), Gaps = 42/238 (17%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R++ L +++ A+G+ +G+T +L T +++ V + + G + Sbjct: 16 RKLVLETGKIARQADGAIFATYGETTVLATVVSAKSVKPGVDFFPLTVNYQEKAFAAGRI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R + R+I R +R + Q+I+ + Sbjct: 76 P---GGYFKRE---GRPSERETLVSRLIDRPIRPLFPEGYRNETQVIVTVLAHDLENDPD 129 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ + AL G V A + G ++ E Sbjct: 130 ILSMVASSAAL-------------TLSGVPFMGPVGAARVAYVNGQYKINPTLDEVKDTA 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229 +D T ++ +E S+D A++ LA+ + Sbjct: 177 LDLVVAGTSDAVLMV---ESEAKELSEDVMLGAVMAGHSSFQPVIDAIIRLAEKAAKE 231 >gi|163745458|ref|ZP_02152818.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex HEL-45] gi|161382276|gb|EDQ06685.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex HEL-45] Length = 711 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 95/243 (39%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R+I + GS L G+T L TL + HG + Sbjct: 318 RIDGRRTDEIRDIVAETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGPPGRREVGHGKLAWRALQAVLPAATDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + +L+ S + + D+ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILED---DGSYAI-----LSDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMEKALAQAKDGRIHILGEMNKA 544 Query: 238 ISN 240 +S Sbjct: 545 LSG 547 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 82/233 (35%), Gaps = 37/233 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L V++ A+GS + G+T ++ T + +T Y + Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTYARQQKP---GQDFFPLTVHYQEKYYAAGK 72 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 73 VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL--DYGEDST 184 A+ A AL +G +A G G I++ D +D Sbjct: 128 MVAMIAASAALTISGA-------------PFRGPIAGCRVGYEGGDYILNPTIDDMQDLR 174 Query: 185 IDV----DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ D T ++ V+ +E S++ + A ++I +I L Sbjct: 175 LNPEQRLDLVVAGTKDA-VMMVE--SEAYELSEEEMLGAVKFAHEQIQPVIDL 224 >gi|297584087|ref|YP_003699867.1| polyribonucleotide nucleotidyltransferase [Bacillus selenitireducens MLS10] gi|297142544|gb|ADH99301.1| polyribonucleotide nucleotidyltransferase [Bacillus selenitireducens MLS10] Length = 700 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S + A GS L G T L T A + ++ + + Sbjct: 315 IRPDGRKVDEIRPLSSEVDILPRAHGSGLFTRGQTQALSVCTLGALGDVQILDGLGIEES 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ I + Sbjct: 375 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEQVIPSEKDFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G T A+I + +A+ + VA I+ G++ Sbjct: 431 EVLESNGSTSQASICASTMAMMAAGV-------------PITSPVAGIAMGLVKHGEDMT 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + +++ + L A+D ++ Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTKDG-VTALQMDIKIEGINREVLKSALEQARDGRLKILD 536 Query: 233 LQKDVISNE 241 I Sbjct: 537 NMLSAIPEP 545 Score = 94.8 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +S +K A G+ +VK+GDT +L+TAT + +P + + G +P Sbjct: 15 RTLSFEVGKYAKQANGAVMVKYGDTTVLSTATGSKEPKDLPFFPLTVNYEERLYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+I + + Sbjct: 75 ---GGFIKRE---GRPSDNAVLTSRLIDRPIRPLFPDGYRNDVQVISIVMSSDQNASSEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A ++ G + G I++ + + D+ Sbjct: 129 AAMIGSSMALS-------------ISDIPFGGPIAGVTVGRVNGEFIINPTTTQMADSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T + V+ AE+ ++ + D I L+ Q+++I+ Sbjct: 176 DLIVAGTKDA-VNMVEAGAEQVP--EEDMMDAILFGHDEIKRLVAFQEEIIAE 225 >gi|285017812|ref|YP_003375523.1| polynucleotide phosphorylase [Xanthomonas albilineans GPE PC73] gi|283473030|emb|CBA15535.1| probable polynucleotide phosphorylase protein [Xanthomonas albilineans] Length = 702 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS+ V GS L G+T + TL + + G Sbjct: 315 VRIDGRALDTVRPISVKAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVSGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPTMEEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGNDFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALAQAKAGRLHILG 536 Query: 233 LQKDVISNE 241 +++ Sbjct: 537 EMASALTSP 545 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 78/228 (34%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +VK DT LL TA + E + + G +P Sbjct: 15 VTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G G I++ + ++ Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTVSDLKDSQLE 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + ++ +E A S+D + + +I + Sbjct: 176 LVVAGTSNAVLMV---ESEAALLSEDVMLGAVTFGHREMQKVINAINE 220 >gi|224367585|ref|YP_002601748.1| polynucleotide phosphorylase/polyadenylase [Desulfobacterium autotrophicum HRM2] gi|257096686|sp|C0QHM6|PNP_DESAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|223690301|gb|ACN13584.1| PnpA [Desulfobacterium autotrophicum HRM2] Length = 695 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 87/246 (35%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +++REI+ V GS L G+T +L TL + + Sbjct: 313 RIDGRAFDEVREITCEVGVLPRPHGSALFTRGETQVLGVLTLGSGPDEQRIETLNGNETR 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R G + RAL V+ A I + + Sbjct: 373 NFMLHYNFPPFSVGECRRAGGPSRRDVGHG----NLAHRALARVLPDQADFEYTIRLVGE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 V++++G + + +AL D + V+ I+ G++ + Sbjct: 429 VMESNGSSSMGTVCAGTLALMD-------------GGVPIAAPVSGIAMGLVSDADNTVV 475 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + + L+ A+ ++K Sbjct: 476 LTDILGDEDHFGDMDFKVAGTEQG-ITALQMDIKIRELPKAVLVKALDQARIGRLHILKR 534 Query: 234 QKDVIS 239 + Sbjct: 535 MLATLE 540 Score = 78.6 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 28/229 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 ++K A GS +V++G+T +L TA + V ++ G +P GN + Sbjct: 21 IAKQASGSVIVQYGETIVLVTAVAAKEARDSVSFLPLTVEYQEKIYAAGRIP---GNYFR 77 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR + R+I R +R + + Q+I + A+ GA Sbjct: 78 REI--GRPSEKETLTARLIDRPIRPLFEKGWASEIQVIATVISTDKENDPDVLALVGASA 135 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL G +A + G + G I + E D++ + Sbjct: 136 ALQM-------------SDIPFAGPIAGLRVGRIDGKFIANPTVQEMENSDIELVVAGSK 182 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241 +G +V V+G A+ S+ + + LI+LQ K + E Sbjct: 183 TG-VVMVEGGAD--VVSEADMLEAIFFGHQAMQPLIQLQEDLKKALGKE 228 >gi|333029627|ref|ZP_08457688.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis DSM 18011] gi|332740224|gb|EGJ70706.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis DSM 18011] Length = 713 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 90/247 (36%), Gaps = 30/247 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ Q+R I GS + G+T L T TL K I + Sbjct: 319 RLDGRKTTQVRPIWSEVDCLPGPHGSAVFTRGETQALCTVTLGTKSDEKIIDDVLCHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ ++ + I + D Sbjct: 379 RFLLHYNFPPFSTGEARPQRGVGRREVGHG----NLAHRALKRMIPEN--YPYVIRVISD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + G +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCGGTLALMDAGVQ-------------IKKPVSGIAMGLIKNPGEDKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S D LN AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSFDILEKALNQAKEGRMHIL 538 Query: 232 KLQKDVI 238 + + Sbjct: 539 DKILETL 545 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 24/236 (10%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69 R I+L K A+G+ +++ G+T +L T ++ VP ++ R Sbjct: 15 RTITLETGKLAKQADGAVMLRMGNTMMLATVCAAKDAVPGTDFMPLQVEYKEKFSAFGRF 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +RE GR R++ RALR + ++ ++ + ADG Sbjct: 75 PGGFTRRE---GRASDYEILTCRLVDRALRPLFPDD--YHAEVYVNIILFSADG------ 123 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 V + D L + + G ++ + G I++ + + D+D Sbjct: 124 -----VDMPDALAGLAASAALAVSDIPFHGPISEVRVARTDGKFIINPTFEQLEKADMDI 178 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNEV 242 T +I+ V+G E + S+ + +A + I K Q + + + V Sbjct: 179 MVAATYE-NIMMVEG--EMSEVSEAELLEAMKVAHEAIKVHCKAQIELAEAVGSTV 231 >gi|156230391|gb|AAI52249.1| MGC174638 protein [Danio rerio] Length = 277 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 87/254 (34%), Gaps = 25/254 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R +L A+GS LVK G+T ++ E VP G++ Sbjct: 23 RPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEA-QNKGYLVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQI----IID 115 + P + +G G ++Q + I + S +++ L + ++ Sbjct: 82 NVDLPPLCSS-----RFGAGPPGEQAQAASQFIADVIESSDLINSEELCIEKAKLCWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163 CD+ + DG A IT AL E K + ++ + V + Sbjct: 137 CDIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGS 196 Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 IVD E+S V + + V + S + +N A Sbjct: 197 SFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRA 255 Query: 224 KDRIADLIKLQKDV 237 R ++ KL V Sbjct: 256 ITRNKEIRKLLDKV 269 >gi|90420519|ref|ZP_01228426.1| polyribonucleotide nucleotidyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90335247|gb|EAS49000.1| polyribonucleotide nucleotidyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 710 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R+I + A GS L G+T L ATL + G Sbjct: 317 RIDGRDLKTVRKIVSEAGILPRAHGSALFTRGETQALVVATLGTGEDEQFVDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RALR ++ I + Sbjct: 377 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRALRPMLPAPEQFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V +++G + A + G +AL D LK VA I+ G++ Sbjct: 433 VTESNGSSSMATVCGTSLALMDAGV-------------PLKRSVAGIAMGLIKEDERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L+ AK +++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTSEG-ITSLQMDIKIQGITEEIMQIALDQAKGGRLHILQE 538 Query: 234 QKDVISN 240 +S Sbjct: 539 MGQALSE 545 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T + + + + T G + Sbjct: 14 RPLTLETGKIARQADGAVLATYGETVVLATVVSAKQPKPGLDFFPLTVNYQEKTFAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + Q+++ V+Q D Sbjct: 74 P---GGFFKRE---GRPSEKETLVSRLIDRPIRPLFAQGYKNETQVVVT--VLQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ A AL G + G + G ++ E S Sbjct: 126 PDVLAMVAASAAL-------------TLSGVPFMGPIGGARVGYINGEYKLNPHVDEMSE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T+ G ++ V+ +E ++D + +I Sbjct: 173 SQLDLVVAGTE-GAVLMVE--SEAHELAEDIMLGAVMFGHRGFQPVIDA 218 >gi|116072761|ref|ZP_01470027.1| RNA binding S1 [Synechococcus sp. BL107] gi|116064648|gb|EAU70408.1| RNA binding S1 [Synechococcus sp. BL107] Length = 721 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 36/238 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A GS LV+ GDT +L TAT + +Y Sbjct: 13 REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSSG----RDGIDFLPLICDYEERLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122 R G+ ++REA R R+ R+I R +R + Q++ C + AD Sbjct: 69 GRIPGSYMRREA---RPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVPAD 125 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 A+TGA +A G +AA+ G+L +++ Y E Sbjct: 126 ----VLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + + ++ + I +LIK Q+ ++ + Sbjct: 169 ERGDLDLVVAGTADG-VVMVEAGANQ--LPEQDVIEAIDFGYEAIQELIKAQETLLKD 223 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 94/247 (38%), Gaps = 29/247 (11%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55 R+ GR +++R+IS V + GS L + G T +L+TATL NT+ Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G + R+ G + RA+ V+ + + Sbjct: 383 KLYLH-HYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPEKDTFPYVVRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ ++L D LK V+ + G++ Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGV-------------PLKAPVSGAAMGLIKEGKDI 484 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D ++ G I +Q + +N A+ ++ Sbjct: 485 KILTDIQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLPVKVVADAVNQARPARLHIL 543 Query: 232 KLQKDVI 238 + + I Sbjct: 544 EKMLEAI 550 >gi|262370055|ref|ZP_06063382.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii SH046] gi|262315094|gb|EEY96134.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii SH046] Length = 697 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I + V A GS L G+T L T TL + TK Sbjct: 317 RIDGRDTKTVRAIDVQVGVLGRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ A LN A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEAALNQAYAGRMHILNE 538 Query: 234 QKDVIS 239 VIS Sbjct: 539 MNQVIS 544 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 75/236 (31%), Gaps = 43/236 (18%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 + L V++ A + ++ G +L P +T Y + G Sbjct: 18 VVLETGRVARQAN-TVVITMGGVQVLVAIV---AQPKAKAGQDFFPLTVNYQEKQYAAGR 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD----GG 124 KRE GRQ I R+I R +R + I + VI +D G Sbjct: 74 IPGGYGKRE---GRQSEAETLISRLIDRPIRPLFPEGFYNE--IQVTATVISSDKTMEGD 128 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AA+ GA A+ G +A G++ G I++ + Sbjct: 129 I--AAMLGASAAMSIAGV-------------PFAGPIAGARVGLINGEYILNPTLEQLKE 173 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 D+D T++ ++ +E S+D + +A I + Sbjct: 174 SDLDLVVAGTEAAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226 >gi|146278950|ref|YP_001169109.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides ATCC 17025] gi|145557191|gb|ABP71804.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides ATCC 17025] Length = 740 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 94/248 (37%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I V GS L G+T L TL I + HG + Sbjct: 344 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 403 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 404 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 459 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP- 173 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 460 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGKWA 506 Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + L AKD ++ Sbjct: 507 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPAIMEQALAQAKDGRMHILG 565 Query: 233 LQKDVISN 240 +S+ Sbjct: 566 EMSKALSS 573 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 42 LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 100 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ V+ D Sbjct: 101 --GGFFKREA---RPSEKETLTSRLIDRPIRPLFVDGF--KNEVLLIVTVLSHDLVNEPD 153 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182 A+ A AL G + A G G +++ D + Sbjct: 154 IVAMIAASAAL-------------TISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLR 200 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E S+ + + + +I + Sbjct: 201 ENPEQRLDLVIAGTKDAVMMVES-EAYELSEAEMLGAVKFGHEAMQPVIDM 250 >gi|238897558|ref|YP_002923237.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259534133|sp|C4K3E6|PNP_HAMD5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|229465315|gb|ACQ67089.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 716 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR ++ +R + + GS L G+T L T TL + + + Sbjct: 315 RIDGRDKDMIRALHACTGILPRTHGSALFTRGETQALVTTTLGTSRDLQTIDDLMGERSD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G + R+ RAL +V+ + + + Sbjct: 375 SFLFHYNFPPYSVGETGMLGSPKRREIGHA----RLAKRALMAVMPNIEEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEEDKFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + + + L+ AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGTSEG-ITALQMDMKIQGITPEIMQSALHHAKAARLHILSV 536 Query: 234 QKDVISN 240 VIS+ Sbjct: 537 MNQVISS 543 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 73/234 (31%), Gaps = 31/234 (13%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++++ + + A + +V T +L T +++ ++ Y + G Sbjct: 15 KVTIETGMMARQATAAVMVIIEGTAVLVTVVAQKEAKP---GQTFFPLSVHYQERSYAVG 71 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 N +RE R R+I R +R + L Q+I + Sbjct: 72 RIPSNFFRRET---RPNEGETLTSRLIDRPIRPLFPKDFLNEVQVIATVVSVNPKVNPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA L + A G + G +++ E Sbjct: 129 VAMIGASAVLSLSGI-------------PFHEPIGAARVGFINGAYVLNPTPEE--LKQS 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 D N V+ + + V + S E +++ + ++ I + L K Sbjct: 174 DLNLVVAGTKNAVLMVES-EANILTEEQMLGAIIFGHEQQQIVIESINDLVKKA 226 >gi|303232220|ref|ZP_07318919.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae PB189-T1-4] gi|302481630|gb|EFL44691.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae PB189-T1-4] Length = 760 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 30/243 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR------NTK 55 R+ GR ++R + + GS L + G T +L+ ATL + W R Sbjct: 319 RVDGRSATEVRPLMIKPDYLPLVHGSGLFQRGQTQVLSVATLG-MLSEWQRLDTIEPQEG 377 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P TG + + R+ G + RAL V+ I + Sbjct: 378 KRYMH-HYNFPPYCTGETGRLGSPKRREIGHG----NLAERALLPVIPSEDEFPYAIRVV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V++++G + A+ G+ +AL D + V+ ++ G++ Sbjct: 433 SEVMESNGSSSMASTCGSTLALMDAGV-------------PIVRPVSGVAMGLIQEEGKT 479 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + + + L A +++ Sbjct: 480 VVLTDIQGLEDFLGDMDFKVTGTTKG-ITAMQMDNKATGLTPEILRQALQQAHVGRMEIL 538 Query: 232 KLQ 234 Sbjct: 539 DAM 541 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 77/232 (33%), Gaps = 28/232 (12%) Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRST 70 L ++K A G CLV GD+ + T + ++ + G +P Sbjct: 16 KLETGELAKQATGECLVSCGDSTVNVTVVVSKERKDYDFFPLTVDFIEKMYAVGRIP--- 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G +KRE+ R ++ RMI R +R QI+ V T + Sbjct: 73 GGYLKRES---RPTEKATLTARMIDRPIRPAFPDGFRNEVQIVAMPLVADQFNPVDTICV 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVD 188 GA A+ +G +A + G G IV+ Y E D+D Sbjct: 130 MGASCAMR-------------TGGVPFEGPLACVRIGRNTQTGEFIVNPTYEERKHSDLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + S + + A S++ + + + IA Q+ + Sbjct: 177 LE--LAGSATFISM-LEAAAQEISEEDMLSAMAFGQQAIAAFCAEQEKFFAK 225 >gi|86355771|ref|YP_467663.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CFN 42] gi|123738432|sp|Q2KE00|PNP_RHIEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|86279873|gb|ABC88936.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli CFN 42] Length = 712 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I + GS L G+T + ATL ++ G Sbjct: 316 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 376 RFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ L AK A ++ Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALGQAKGGRAHILGEMAKA 541 Query: 238 ISN 240 I+ Sbjct: 542 ITE 544 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 68/220 (30%), Gaps = 27/220 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + Q+++ + Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQHDLENNPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ + AL G V G + G +++ E Sbjct: 128 ILSMIASSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESS 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +D T ++ +E +D + Sbjct: 175 LDLVVAGTYDAVLMV---ESEAKELPEDVMLGAVMFGHKG 211 >gi|310827652|ref|YP_003960009.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612] gi|308739386|gb|ADO37046.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612] Length = 692 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R R+ +++R I+ GS L G+T +L+ ATL + +V + N Sbjct: 310 IRPDNRKMDEVRPITAKIDYIPRVHGSGLFTRGETQVLSIATLGVLRDAQVLDGLSNDTE 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y S G + R+ G + RAL ++ I + Sbjct: 370 KRYMHQYNFPGYSVGEARPMRSPGRREIGHG----ALAERALLPMIPPEEEFPYAIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V+ ++G T A++ G+ +AL LK VA ++ G++ Sbjct: 426 EVLSSNGSTSQASVCGSSLALMAAGV-------------PLKKPVAGVAMGLIKEDEKLA 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L A+ ++ Sbjct: 473 ILTDIQGMEDFLGDMDFKVAGTKDG-ITAIQMDIKIHGIDREILTQALEQARIGRMHILG 531 Query: 233 LQKDVISNE 241 + + IS Sbjct: 532 IMNEEISEP 540 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 92/233 (39%), Gaps = 27/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + V++ A+GS ++++G+T +L A E + + + + G + Sbjct: 11 RPFRVEIGEVAQLAKGSAMIRYGETSVLAIAAASKKPREGMDFFPLSVDYEEKQYAVGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + Q++ ++ D Sbjct: 71 P---GGFLKRE---GRPSEKAILNSRLIDRPIRPLFPKGFRNDVQVVTTVMSVEQDNAPE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA +AL G +++ G++ G I++ + D Sbjct: 125 IAAMIGASIALS-------------ISDIPFDGPTGSVAVGLIDGEFILNPTEAQREVSD 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I+ V+ A S++ + A + I ++ Q+++++ Sbjct: 172 LSLTVAGTKDA-IMMVEAGANE--VSEETMLEAILFAHEEIKKIVAFQEEIVA 221 >gi|300794376|ref|NP_001179126.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Bos taurus] gi|297480320|ref|XP_002691377.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Bos taurus] gi|296482678|gb|DAA24793.1| polyribonucleotide nucleotidyltransferase 1 [Bos taurus] Length = 783 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 86/249 (34%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--------N 53 R GR +R I+ + K GS L + G T +L T T + + Sbjct: 358 RCDGRDLTSLRNINCEVDMFKILHGSSLFQRGQTQVLCTVTFDSLESNFKSDRIITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + RAL V+ I Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGINRRELGHG----ALAERALYPVIPKDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNSP---DKGEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYHGDMDFKIAGTSKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 31/205 (15%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+GS +V+ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE S + R+I R++R + QI+ C+++ DG Sbjct: 114 ---TNYLRREIGS---SDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA VAL G + A+ GM+ G +V+ E Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPIGAVRIGMIDGECVVNPTRKE--MA 210 Query: 186 DVDANFVMTD--SGHIVEVQGSAER 208 + N V+T IV ++ SAE Sbjct: 211 NSTLNLVVTGAPKSQIVMLEASAEN 235 >gi|237753403|ref|ZP_04583883.1| polynucleotide phosphorylase/polyadenylase [Helicobacter winghamensis ATCC BAA-430] gi|229375670|gb|EEO25761.1| polynucleotide phosphorylase/polyadenylase [Helicobacter winghamensis ATCC BAA-430] Length = 736 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMWIRNTKHG- 57 +R GR ++R IS+ + A S L G T ++ T E + T G Sbjct: 346 IRADGRGLKEVRPISIETNILPKAHSSVLFTRGQTQALVVCTLGGEMDAQSYELLTDKGT 405 Query: 58 ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y P S G + A R+ G + RAL V + I + Sbjct: 406 SKERFMVHYNFPPFSVGEAIPIGATGRRELGHG----NLAKRALECSVINGD--QKTIRL 459 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A++ G +AL + V +G A+ + Sbjct: 460 VSEILESNGSSSMASVCGGSLALAAADIECTSLIAGVAMGLVCEGEKYAV---------L 510 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D + SG I +Q + S + L AK+ ++++ Sbjct: 511 TDIMGLEDHDGDMDFKVAGSKSG-ITALQMDIKLGGLSTEILECALLQAKEARFHILEIM 569 Query: 235 KDV 237 + Sbjct: 570 ESA 572 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 81/251 (32%), Gaps = 57/251 (22%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATL-------EEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 V+K A GS K G+ LL T + E+ +P+ ++ + + G P G Sbjct: 20 VAKQASGSVYYKSGNNVLLATLAVDCDCIVEEDFLPLTVQYIEKAYAA---GKFP---GG 73 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 +KREA + G R++ R+LR + QI I V+ AD Sbjct: 74 YIKREA---KPGDFETLTARIVDRSLRPLFPKDYCYPTQITI--MVLSADND-------- 120 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 A L + + L V + G + +V+ E +D FV Sbjct: 121 ---ADLQLLALNAASAALYTSEIPLNFAVNGVRIGRIGNEFVVNPSLKEMEQSTLDL-FV 176 Query: 193 MTDSGHIVEVQGSAERAT---------------------------FSQDHFFAMLNLAKD 225 + ++ ++ ++ L +AK Sbjct: 177 SGVNEDLLMIEMRTFGGVDIQTPSNPLSLVTTLMEDKKAEFSANELTEIELMQALEIAKT 236 Query: 226 RIADLIKLQKD 236 I+ KL ++ Sbjct: 237 HISKKSKLVEE 247 >gi|254787145|ref|YP_003074574.1| polynucleotide phosphorylase/polyadenylase [Teredinibacter turnerae T7901] gi|259534168|sp|C5BPV5|PNP_TERTT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|237684870|gb|ACR12134.1| polyribonucleotide nucleotidyltransferase [Teredinibacter turnerae T7901] Length = 705 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R + + V GS L G+T L ATL + Sbjct: 315 RIDGRDTKTVRPLQVEVGVLPKVHGSALFTRGETQALVVATLGSARDAQIIDALEGEHRD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R + +++ + + + Sbjct: 375 NFMLHYNFPPYSVGE-CGRMGATGR---REIGHGRLARRGVAAMLPKEDQFPYTMRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D LK VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGSSLALMDAGV-------------PLKAPVAGIAMGLVKEENGFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ L A ++ Sbjct: 478 LTDILGDEDHLGDMDFKVAGTANG-VTALQMDIKIEGITEEIMETALEQALHARLHILSE 536 Query: 234 QKDVISNE 241 VI+ Sbjct: 537 MNAVIAQP 544 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 73/229 (31%), Gaps = 28/229 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 I+L +++ A G+ L G T +L T + + + G +P Sbjct: 15 ITLETGRIARQATGAVLASMGKTSVLCTVVGAKEASPGQDFFPLSVHYQEKAYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + + Q++ + D Sbjct: 74 --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPDGFVNEVQVVCTVVAAEKDVDPDIC 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187 A+ G AL G + A G +++ Y ++ ++ Sbjct: 129 AMIGTSAALAISGI-------------PFNGPIGAARVGYTQADGYLLNPTYQALASSEL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D T ++ +E +D + A + +++ + Sbjct: 176 DMVVAGTQDAVLMV---ESEANELPEDIMLGAVLYAHQEMQAVVQAVNE 221 >gi|260436528|ref|ZP_05790498.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 8109] gi|260414402|gb|EEX07698.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 8109] Length = 721 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 36/238 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A GS LV+ GDT +L TAT + +Y Sbjct: 13 REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGG----RDGIDFLPLICDYEERLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122 R G+ ++RE+ R R+ R+I R +R + Q++ C + AD Sbjct: 69 GRIPGSYMRRES---RPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERVPAD 125 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 A+TGA +A G +AA+ G+L +++ Y E Sbjct: 126 ----VLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + + ++ + I +LIK Q+ ++ + Sbjct: 169 ERGDLDLVVAGTPDG-VVMVEAGANQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 29/247 (11%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55 R+ GR +++R+IS V + GS L + G T +L+TATL NT+ Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G + R+ G + RA+ V+ + + Sbjct: 383 KLYLH-HYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPEKDTFPYVVRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ ++L D LK V+ + G++ Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGV-------------PLKAPVSGAAMGLIKEGDEV 484 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D ++ G I +Q + S +N A+ ++ Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLSVKTVAEAVNQARPARLHIL 543 Query: 232 KLQKDVI 238 + + I Sbjct: 544 EKMLEAI 550 >gi|323138133|ref|ZP_08073206.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC 49242] gi|322396595|gb|EFX99123.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC 49242] Length = 717 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 18/242 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR +R I V GS L G+T L ATL ++ G Sbjct: 315 IRIDGRDVKTVRPIVAEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+R ++ +A + + Sbjct: 375 ERFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPAAAEFPYTLRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A + G +AL D ++ + + +L+G A+ + D Sbjct: 431 EITESNGSSSMATVCGTSLALMDAGVPLKAPTAGIAMGLILEGERFAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T +G + +Q + A +++ L AKD ++ Sbjct: 482 ILGDEDHLGDMDFKVAGTSNG-VTSLQMDIKIAGITEEIMKVALAQAKDGRLHILGEMAK 540 Query: 237 VI 238 + Sbjct: 541 AL 542 Score = 88.2 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 73/227 (32%), Gaps = 27/227 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ L V++ A+G+ + +G+T +L T + K P +T Y + Sbjct: 14 RKLVLETGKVARQADGAVMASWGETTVLATV-VSAKAPK--PGQDFFPLTVNYQEKAFAA 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR R + R+I R +R + Q+I+ + Sbjct: 71 GRIPGGYFKRE---GRPSERETLVSRLIDRPIRPLFPDGYRCDTQVIVTVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G V G + G ++ E D Sbjct: 128 ILAMVAASAAL-------------TLSGVPFMGPVGGARVGYINGQLKLNPTIEEMKLSD 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E S++ + +I Sbjct: 175 LDLVVAGTSDAVLMV---ESEAKELSEETMLEAVMTGHRGFQPVIDA 218 >gi|330895301|gb|EGH27639.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 701 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 479 LTDILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSPSKKIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|224001004|ref|XP_002290174.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973596|gb|EED91926.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 172 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 57/180 (31%), Gaps = 28/180 (15%) Query: 1 MRLSGRQENQMREISLTRR------------VSKYAEGSCLVKFGDTHLLTTATLE-EKV 47 +R GR+ +++R +S + GS LV G T +L + Sbjct: 8 LRSDGRRPHEIRHMSCHLGALPSTTACGSALPTSACSGSALVSMGLTQVLCVVRGPSDAG 67 Query: 48 PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107 + P S R + R E ++ AL + + L Sbjct: 68 RRTEELPDRATLEVTMRTSPFSPPG--DRRVTNPTSDRRLIEQSHLLQTALSASILLHLY 125 Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167 +I + V+ DGG AAI A +AL D LK V A S G Sbjct: 126 PKSKISVTVMVLADDGGRLEAAINAATLALIDAGI-------------PLKDMVCACSAG 172 >gi|209883656|ref|YP_002287513.1| polyribonucleotide nucleotidyltransferase [Oligotropha carboxidovorans OM5] gi|226702670|sp|B6JCR8|PNP_OLICO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|209871852|gb|ACI91648.1| polyribonucleotide nucleotidyltransferase [Oligotropha carboxidovorans OM5] Length = 714 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 89/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I V A GS L G+T L TL ++ G Sbjct: 316 RIDGRDLKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLAGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ V+ + + + Sbjct: 376 TFLLHYNFPPFSVGETGR----IGSPGRREIGHGKLAWRAIHPVLPAHHEFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G+ +AL D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGDRFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + A +++ L AKD ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEKG-VTSLQMDIKIAGITEEIMKVALTQAKDGRMHILGEMAKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 38/236 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T ++ T T +E + + T G + Sbjct: 14 RPLKLETGKVARQADGAVIATYGETVVMATVVSAKTPKEGIDFLPLTVNYQEKTYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFADGYRCDTQVIVTTLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G V A + I++ E Sbjct: 128 IVAMVAASAAL-------------TLSGVPFMGPVGAARVAFVNNEFILNPTLDEMVDTQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAML----NLAKDRIAD 229 +D T + ++ V+ A+ F HF +L LA+ + Sbjct: 175 LDLVVAGTATA-VLMVESEAKELPEEIMLGAVMFGHKHFQPVLKAIIELAEQAAKE 229 >gi|187610327|sp|Q1QS60|PNP_NITHX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 720 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I V A GS L G+T + TL + T Sbjct: 316 RIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G ++ RA+ V+ I + + Sbjct: 376 TFLLHYNFPPYSVGETGRLGSTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA ++L D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + A +++ L A++ ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEVG-ISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAKA 541 Query: 238 ISN 240 ++N Sbjct: 542 LTN 544 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 42/238 (17%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T T E V + T G + Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL +G + A G + +++ E +D Sbjct: 128 VLAMVAASAALTLSGA-------------PFRGPIGAARVGFMNDEYVLNPTLDE--MVD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229 V+ + V + S E S+D A++ LA+ + Sbjct: 173 TQLELVVAGTADAVLMVES-EAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKE 229 >gi|126664893|ref|ZP_01735877.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17] gi|126631219|gb|EBA01833.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17] Length = 706 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 87/242 (35%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I + + A GS L G+T + T TL M I + G Sbjct: 318 RIDGRDTKTVRPIKIEVGILPGAHGSALFTRGETQAIVTTTLGTSRDMQIIDALEGESKD 377 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R L +V+ I + Sbjct: 378 PFLFHYNFPPYSVGEAGRMMGPGRREIGHG----RLAKRGLLAVMPTVEEFPYTIRAVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G+ +AL D ++ + V +G AI + D+ Sbjct: 434 ITESNGSSSMASVCGSSLALMDAGVPIKSAVAGIAMGLVKEGDKFAI---------LTDI 484 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + + + L A ++ V Sbjct: 485 LGDEDHLGDMDFKVAGTKEG-ITALQMDIKINGITDEIMELALEQAYGARQHILGEMNKV 543 Query: 238 IS 239 I+ Sbjct: 544 IA 545 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 45/251 (17%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ LV D +L T ++ + + T G +P Sbjct: 17 VTLETGRIARQATGAVLVTIDDISVLGTVVGAKEAKPGQGFFPLTVNYTEKTYSVGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KREA R + R+I R +R + + Q+++ Sbjct: 76 --GGFFKREA---RPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVLTV------------ 118 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187 ++ D + + +G + A G ++ + E ST + Sbjct: 119 -MSANKTQDPDIAAMLAASAALAISGIPFEGPIGASRVGFTNERGYFLNPTHEERSTSLL 177 Query: 188 DANFVMTDSGHI-VEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL------ 233 D T+ + VE Q + ++D + A I + Sbjct: 178 DMIVAGTEDAVLMVESQA----QSLTEDQMLGAVLFAHQEMQTAVSGIKEFAAEIGKPRW 233 Query: 234 --QKDVISNEV 242 Q + ++ E+ Sbjct: 234 EWQAEAVNAEL 244 >gi|57239082|ref|YP_180218.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium str. Welgevonden] gi|58579025|ref|YP_197237.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium str. Welgevonden] gi|81352951|sp|Q5HBH6|PNP_EHRRW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|57161161|emb|CAH58074.1| polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|58417651|emb|CAI26855.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 789 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 90/245 (36%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR N +R+I + V GS L G+T L L + + Sbjct: 323 RIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P + G A G R ++ +A+R V+ + I + + Sbjct: 383 NFLLHYNFPPYAVGE----SAALRAPGRREIGHGKLAWKAIRYVLPEKSDFPYTIRVVSE 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + ++DG + A + GA +AL D +K VA I+ G++ G Sbjct: 439 ITESDGSSSMATVCGASLALMDTGV-------------PIKAPVAGIAMGLIKEGEKFII 485 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + + S + L AKD ++ Sbjct: 486 LSDILGDEDHLGDMDFKVAGTSSG-ITALQMDMKISGISIEVIEKSLLQAKDGRMHILDK 544 Query: 234 QKDVI 238 VI Sbjct: 545 MNLVI 549 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 13/129 (10%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 +++ A G+ +V +G T +L+T +E V + + G +P G +KR Sbjct: 23 IARQANGAVVVTYGGTTVLSTVVAGKAKEPVDFLPLTVQFVAKSYAVGKIP---GGFLKR 79 Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGAW 134 E G+ R I R+I R++R + I+ C+++ D T A+ GA Sbjct: 80 E---GKPSDRETLISRLIDRSIRPLFPSGFYDEVSIV--CNLLSYDTVTPPEVTALIGAT 134 Query: 135 VALHDCLQH 143 AL Sbjct: 135 AALAISGVP 143 >gi|157413740|ref|YP_001484606.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9215] gi|187610311|sp|A8G5Y9|PNP_PROM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157388315|gb|ABV51020.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 721 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 97/238 (40%), Gaps = 36/238 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A GS +++ GDT LL TAT K + + +Y Sbjct: 13 REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTTK----KEASDFLPLICDYEEKLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122 R G ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 69 GRIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPTWMRDEIQIVASCLSLDERVPAD 125 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 A+TGA +A G +AA+ G++ I++ Y E Sbjct: 126 ----VLAVTGASIA-------------TLLGEIPFYGPMAAVRVGLIGDDFILNPSYREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + + +LIK Q+D++ + Sbjct: 169 EKGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLKD 223 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 92/251 (36%), Gaps = 31/251 (12%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR+ +++R+I+ + + K GS L + G T +L+T TL P + + Sbjct: 323 RVDGRELDEVRKITASAGILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380 Query: 61 AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 E Y P S G R+ G + RA+ V+ + + Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRTPGRREIGHG----ALAERAIIPVLPGKETFPYVLRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ ++L D LK V + G++ Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVGGTAMGLIKEGKD 483 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G I +Q + + A+ + Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTNKG-ITALQMDMKITGLPVSIISDAIKKARPARLHI 542 Query: 231 IKLQKDVISNE 241 ++ ++ I Sbjct: 543 LEKMQEAIDKP 553 >gi|47213776|emb|CAF92665.1| unnamed protein product [Tetraodon nigroviridis] Length = 379 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 93/261 (35%), Gaps = 32/261 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 RL GRQ R I ++ A+ G C V+ G+T ++ + E P R G + Sbjct: 23 RLDGRQTYDYRRIRVSFG----ADYGCCFVELGETRVMAQVSCELVAPKESR-PNEGILF 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112 + P ++ +GRQ S + R + R LR +D +L G + QI Sbjct: 78 FNIELSPLASPA-----FEAGRQSELSVNLNRQLERCLRNSKCIDTESLCVVSGEKVWQI 132 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVLKGHVAAI 164 +D ++ DG AA A AL + + L + I Sbjct: 133 RVDVHMLNHDGNLMDAASIAAITALCHFRRPDVGIVGEEIKVFSPEERDPIPLSIYHMPI 192 Query: 165 SCGML----CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 S Y +VD E+ +D M I +Q S ++ Sbjct: 193 SVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSG-GIMLLKEQVMRCS 251 Query: 221 NLAKDRIADLIKLQKDVISNE 241 +A +++++ +L + N+ Sbjct: 252 KIASVKVSEITELVSKALEND 272 >gi|330937951|gb|EGH41738.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. pisi str. 1704B] Length = 701 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 479 LTDILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|225620025|ref|YP_002721282.1| polynucleotide phosphorylase/polyadenylase [Brachyspira hyodysenteriae WA1] gi|257096669|sp|C0R0E0|PNP_BRAHW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|225214844|gb|ACN83578.1| polynucleotide phosphorylase/polyadenylase [Brachyspira hyodysenteriae WA1] Length = 712 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 82/245 (33%), Gaps = 20/245 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 MR GR +++R I+ + GS L G T L+ TL + + + +G Sbjct: 312 MRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + R+ +V+ I + Sbjct: 372 KTFMLHYNFPPFSVGEVGR----YGAPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVA 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 ++++++G + A I + ++L + + GY I+ Sbjct: 428 EILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGL----------ATYKDGYKILT 477 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I Q + S L AK ++ Sbjct: 478 DIQGVEDHLGDMDFKVAGTRKG-ITAFQLDIKLTGISAQILKEALEQAKKARYFILDKID 536 Query: 236 DVISN 240 I+N Sbjct: 537 ATIAN 541 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 84/227 (37%), Gaps = 27/227 (11%) Query: 16 LTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71 L + K A GS ++ G+T +L T + K P + +T Y + G Sbjct: 15 LETGLLAKQAHGSVTLRLGNTTILATV-VAAKEPN--LESDFFPLTVNYNEKYYAGGKIP 71 Query: 72 -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 KREA + + I R+I R LR + QII + D T Sbjct: 72 GGFFKREA---KPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPT----- 123 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 D L + + G VAA+ G G I++ E ST ++D Sbjct: 124 --------DALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSELDI- 174 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 V I+ ++G A+ S++ F + LA + I +Q ++ Sbjct: 175 IVAGSKDAILMIEGEAKE--VSEEVFIGAIELAHKEMQKYIDMQNEM 219 >gi|313236007|emb|CBY11334.1| unnamed protein product [Oikopleura dioica] Length = 271 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 89/247 (36%), Gaps = 22/247 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR +++R + L + V+ A+ S +++ G+T ++ T E + K G + Sbjct: 28 VRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKVICGITA-ETIKPAAATPKDGSFS 86 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG------SRQIII 114 + + N A +G +Q + + L+ V + L + + I Sbjct: 87 VNFEFSSVCSPN-----AKAGPPNEVAQTMSIFLDGILKQVFQTNQLCIEPDLLAWTLFI 141 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV---------LKGHVAAIS 165 D ++ DG AA+ +L D + V LK + + Sbjct: 142 DVYCLEDDGNVTDAAMMSVISSLRDLKLPEITIDEETAKPLVNLEKQSPVDLKMFPVSTT 201 Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 G G ++D E V ++ G ++ S + SQ+ A + +K Sbjct: 202 YGEFSGILLLDPTARETELGSSPITVVCSEKGALLCFNRSG-GSPLSQEQVAAAIENSKR 260 Query: 226 RIADLIK 232 R + + Sbjct: 261 RSSTIYD 267 >gi|302185436|ref|ZP_07262109.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. syringae 642] Length = 701 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 479 LTDILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|126730394|ref|ZP_01746205.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37] gi|126709127|gb|EBA08182.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37] Length = 713 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +Q+R I + GS L G+T L TL + + T Sbjct: 318 RIDGRALDQVRSIVSETGILPRTHGSALFTRGETQALVVTTLGTGDDEQMIDALQGTYKS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + VL+ S G+ + D+ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLVLE---EDGSYGI-----LTDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A + + L+ AK+ ++ Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKTALSQAKEGRMHILGEMSKA 544 Query: 238 ISN 240 IS Sbjct: 545 ISE 547 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 80/231 (34%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+G+ + G+T ++ T +E + + G +P Sbjct: 16 LTLETGKVARQADGTVIATLGETSVMANVTFAKTQKEGQDFFPLTVHYQEKYYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182 A+ A AL G +A G G +++ + Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAGARVGYEDGSYVLNPTVDDMHLLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D + V+ + V + S E ++D + A ++I +I L Sbjct: 175 DNPDQRLDLVVAGTKDAVMMVES-EAYELTEDEMLGAVMFAHEQIQPVIDL 224 >gi|332518964|ref|ZP_08395431.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola 5H-3-7-4] gi|332044812|gb|EGI81005.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola 5H-3-7-4] Length = 750 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 85/245 (34%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR+ +++R I GS + G+T L T TL E Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLGTSREANQIDMPSYEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ +V + + Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREVGHG----NLAQRALKGMVPED--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + +A+ D ++ + + G ++ G + D Sbjct: 431 EILESNGSSSMATVCAGTMAMMDAGVQLKKPVSGIAM-----GLISDADSGKYA--VLSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + L A+D ++ + Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILDKITE 542 Query: 237 VISNE 241 I Sbjct: 543 TIETP 547 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 74/227 (32%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REIS+ K A GS +V+ G LL T + V + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQADVDFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHSETQVMIQLMSHDDD----- 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D + + + + ++ G + G I++ + D+ Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECPISEARVGRVNGEFIINPTRAQLEESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + + ++ V+G E S++ + A + I Q Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMTEAIKFAHEAIKVQCAAQ 220 >gi|197121578|ref|YP_002133529.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp. K] gi|226702594|sp|B4UHG5|PNP_ANASK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|196171427|gb|ACG72400.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp. K] Length = 721 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 90/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR +R+I+ + GS L G+T L TL G + Sbjct: 324 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G + RALR+V+ + + D Sbjct: 384 KFMLHYNFPPFSVGEVKFLRSPGRREIGHG----ALAERALRAVMPPEDQFPYTVRVVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 +++++G + A++ G ++L D +K VA I+ G++ G Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIKEGEKIAI 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + ++D L A + ++ Sbjct: 487 LSDILGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGE 545 Query: 234 QKDVIS 239 +S Sbjct: 546 MAKALS 551 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 86/238 (36%), Gaps = 32/238 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +I L V+K A GS V+ GD+ +L TA +E + + + G +P Sbjct: 14 DILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ +RE GR + R++ R+ R + Q+I + T Sbjct: 74 ---GSFFRRE---GRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA ALH G +A + + G + + + Sbjct: 128 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLA--QRAEA 172 Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241 D + VM S IV V+G A+ S+ L + + L+ Q + N+ Sbjct: 173 DLDVVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDALRAATGNK 228 >gi|311030081|ref|ZP_07708171.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. m3-13] Length = 715 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 325 VRPDGRKSDEIRPLASEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEEE 384 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ + + Sbjct: 385 KRFMHHYNFPLFSVGE----TGPMRGPGRREIGHGALGERALDPVIPSEKDFPYTVRLVS 440 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 441 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKKGEHYT 487 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + S+D L AK Sbjct: 488 VLSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIEGLSRDILEEALQQAKIG 540 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 95/231 (41%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ +V++GDT +L+TAT +K+ + + G +P Sbjct: 25 RNLTVEVGQLAKQANGAVMVRYGDTAVLSTATASKEPKKLDFFPLTVNYEERLYAVGKIP 84 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + Q+I + + + Sbjct: 85 ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 138 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + +++ + + D+ Sbjct: 139 AAMFGSSLALS-------------VSDIPFQGPIAGVTVGRINDEFVINPNVDQLEKSDI 185 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ ++ + + I LI Q++++ Sbjct: 186 NLVVAGTKDA-INMVEAGADEVP--EEVMLEAIMFGHNEIKRLIAFQEEIV 233 >gi|58617084|ref|YP_196283.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium str. Gardel] gi|75357076|sp|Q5FHK5|PNP_EHRRG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|58416696|emb|CAI27809.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium str. Gardel] Length = 789 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 90/245 (36%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR N +R+I + V GS L G+T L L + + Sbjct: 323 RIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P + G A G R ++ +A+R V+ + I + + Sbjct: 383 NFLLHYNFPPYAVGE----SAALRAPGRREIGHGKLAWKAIRYVLPEKSDFPYTIRVVSE 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + ++DG + A + GA +AL D +K VA I+ G++ G Sbjct: 439 ITESDGSSSMATVCGASLALMDTGV-------------PIKAPVAGIAMGLIKEGEKFII 485 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + + S + L AKD ++ Sbjct: 486 LSDILGDEDHLGDMDFKVAGTSSG-ITALQMDMKISGISIEVIEKSLLQAKDGRMHILDK 544 Query: 234 QKDVI 238 VI Sbjct: 545 MNLVI 549 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 31/224 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 +++ A G+ +V +G T +L+T +E V + + G +P G +KR Sbjct: 23 IARQANGAVVVTYGGTTVLSTVVAGKAKEPVDFLPLTVQFVAKSYAVGKIP---GGFLKR 79 Query: 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGAW 134 E G+ R I R+I R++R + I+ C+++ D T A+ GA Sbjct: 80 E---GKPSDRETLISRLIDRSIRPLFPSGFYDEVSIV--CNLLSYDTVTPPEVTALIGAT 134 Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFV 192 AL G V G L +++ E F+ Sbjct: 135 AALA-------------ISGVPFNGMVVGARVGYLLSEDKYLLNASADE-MLSSSLDLFL 180 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ++ V+ A + + A ++ ++IKL ++ Sbjct: 181 SGNKDSVLMVESEASELS--ESQMLAAISFGHQNCQEVIKLIEE 222 >gi|237798567|ref|ZP_04587028.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021420|gb|EGI01477.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 701 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G AI + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G + +Q + +++ L A + Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 71/230 (30%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 + L +++ A G+ LV D +L T + + + + T G +P Sbjct: 15 VILETGRIARQASGAVLVTVDDDVSVLVTVVGAKHADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|220916341|ref|YP_002491645.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter dehalogenans 2CP-1] gi|254782701|sp|B8JFZ1|PNP_ANAD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219954195|gb|ACL64579.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter dehalogenans 2CP-1] Length = 721 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 90/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR +R+I+ + GS L G+T L TL G + Sbjct: 324 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G + RALR+V+ + + D Sbjct: 384 KFMLHYNFPPFSVGEVKFLRSPGRREIGHG----ALAERALRAVMPPEDQFPYTVRVVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 +++++G + A++ G ++L D +K VA I+ G++ G Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIKEGEKIAI 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + ++D L A + ++ Sbjct: 487 LSDILGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGE 545 Query: 234 QKDVIS 239 +S Sbjct: 546 MAKALS 551 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 86/238 (36%), Gaps = 32/238 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +I L V+K A GS V+ GD+ +L TA +E + + + G +P Sbjct: 14 DILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ +RE GR + R++ R+ R + Q+I + T Sbjct: 74 ---GSFFRRE---GRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA ALH G +A + + G + + + Sbjct: 128 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLA--QRAEA 172 Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241 D + VM S IV V+G A+ S+ L + + L+ Q + N+ Sbjct: 173 DLDVVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDALRAATGNK 228 >gi|93004911|ref|YP_579348.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter cryohalolentis K5] gi|123264798|sp|Q1QEN9|PNP_PSYCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|92392589|gb|ABE73864.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter cryohalolentis K5] Length = 700 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R + + V + GS L G+T L T TL + + ++ G I Sbjct: 320 RIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTTLGNTRDVNMIDSLAGTIRD 379 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++++ S I + + Sbjct: 380 HFMLHYNFPHFSVGETGREGIPKRREIGHG----RLARRGVQAMLPDSDRFPYVIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D +K VA I+ G++ G Sbjct: 436 ITESNGSSSMASVCGASLALMDAGV-------------PIKAPVAGIAMGLVKEGERFAV 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + + D L A ++ Sbjct: 483 LSDILGDEDHLGDMDFKVAGSKDG-ITALQMDIKIEGITPDIMEQALKQAHAGRIHILDA 541 Query: 234 QKDVI 238 V+ Sbjct: 542 MNKVL 546 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 65/217 (29%), Gaps = 26/217 (11%) Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++ + S LV G +L A ++ E + + G +P Sbjct: 17 QVVIETGRIARQANSILVHMGGVTVLVAAVVKSDAKEGQNFFPLTVNYQEKMYAAGKIPG 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + G R GR R+I R +R + + QI A Sbjct: 77 AYGKR------EGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSSDKTQSADIA 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G VAA G + G +++ E D+D Sbjct: 131 ALIGASAALA-------------ISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 T S ++ +E A S+D + Sbjct: 178 LVVAGTKSAVLMV---ESEAAELSEDQMLGAVLYGHQ 211 >gi|85714171|ref|ZP_01045160.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A] gi|85699297|gb|EAQ37165.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A] Length = 723 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I V A GS L G+T + TL ++ G Sbjct: 321 RIDGRDVKTVRAIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSLSGTYKE 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+ V+ I + + Sbjct: 381 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G+ +AL D ++ + + +L+G A+ + D+ Sbjct: 437 ITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAV---------LSDI 487 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+SG I +Q + A +++ L AKD ++ Sbjct: 488 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIAGITEEIMKVALAQAKDGRIHILGEMAKA 546 Query: 238 ISN 240 ++N Sbjct: 547 LTN 549 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 85/254 (33%), Gaps = 45/254 (17%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T T E V + T G + Sbjct: 19 RPLKLETGKIARQADGAVIASYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 78 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 79 P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 132 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL KG + A G + +++ E +D Sbjct: 133 VLAMVAASAAL-------------TLSGVPFKGPIGAARVGFMNDEYVLNPTLDE--MVD 177 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIA--- 228 V+ + V + S E S+D A++ LA+ Sbjct: 178 TRLELVVAGTADAVLMVES-EAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPR 236 Query: 229 DLIKLQKDVISNEV 242 ++ + + E+ Sbjct: 237 EVAAIDNSALEKEM 250 >gi|330958045|gb|EGH58305.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 701 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G AI + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G + +Q + +++ L A + Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|320322524|gb|EFW78617.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. glycinea str. B076] gi|320330007|gb|EFW85994.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. glycinea str. race 4] gi|330875199|gb|EGH09348.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 701 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G AI + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G + +Q + +++ L A + Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|168180709|ref|ZP_02615373.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum NCTC 2916] gi|226949765|ref|YP_002804856.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A2 str. Kyoto] gi|254782713|sp|C1FS53|PNP_CLOBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|182668424|gb|EDT80403.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum NCTC 2916] gi|226842894|gb|ACO85560.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A2 str. Kyoto] Length = 702 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 86/244 (35%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R GR +++R IS + G+ L G T ++T AT + ++ I Sbjct: 312 RPDGRSFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEASK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + + I D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSDDLE-------KEKVITDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + A S + L AK ++ K+ Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIAGLSDNCVRDALEGAKKARLHILGKIKEC 539 Query: 238 ISNE 241 I Sbjct: 540 IPEP 543 Score = 82.1 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 86/236 (36%), Gaps = 31/236 (13%) Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64 R++ + + A + +GDT ++ A+ E + + + + G Sbjct: 12 RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKAPREGIDFFPLSVDYEERLYSVG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G +KRE G+ +S R I R LR + QI+ ++ D Sbjct: 70 KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI G+ +AL S VAA+S G++ G I++ + Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T ++ V+ + ++ ++ + +++ Q++ ++ Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFQECKNIVAFQEEAVAK 223 >gi|89889343|ref|ZP_01200854.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium BBFL7] gi|89517616|gb|EAS20272.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium BBFL7] Length = 748 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 20/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKH 56 +RL GR+ +R+I GS + G+T L T TL V Sbjct: 317 IRLDGRKTTDIRDIWCEVDYLPSTHGSAIFSRGETQALATVTLGTSRDANVIDMASQEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL++++ + + Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKNMLPEDL--PYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +A+ D M+ + + + G A+ + D Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGLPMKKPVSGIAMGLITDGDKYAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I Q + S + L A+D ++ D Sbjct: 482 ILGDEDHLGDMDFKVTGTEDG-ITACQMDIKVKGLSYEILTNALMQARDGRMHILGKLTD 540 Query: 237 VIS 239 I+ Sbjct: 541 TIA 543 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 27/234 (11%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68 +I++ K A GS ++ G LL T + + A G P Sbjct: 17 DITIETGALAKQAHGSVVITCGKAMLLGTVVSSYKSTGLDFLPLTVDYREKFAAAGKYP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KREA R R++ R LR + Q++I ++ D Sbjct: 76 --GGFFKREA---RPNDGEVLTMRLVDRVLRPLFPKDYHAEVQVMI--QLMSHD------ 122 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + D + + + + ++ + + G +++ Y + D++ Sbjct: 123 -----PEVMPDAMAGLAASAAIQLSDLPFECAISEVRVARVDGEFVINPSYAQLEAADLE 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 + + ++ V+G E + ++ A + A + I D Q ++ +V Sbjct: 178 M-MIGASADSVMMVEGEMEEIS--EEEMIAAIKAAHEAIKDQCAAQ-IALAEQV 227 >gi|66047403|ref|YP_237244.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. syringae B728a] gi|75500706|sp|Q4ZNR6|PNP_PSEU2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|63258110|gb|AAY39206.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 701 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G AI + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G + +Q + +++ L A + Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|87119787|ref|ZP_01075684.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121] gi|86165263|gb|EAQ66531.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121] Length = 702 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 R+ GR +R I + + GS L G+T + T TL + Sbjct: 315 RIDGRDNKTVRPIEVEVGLLSKTHGSSLFTRGETQAIATCTLGTSRDAQMSDGLAGENKD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R R+ R +++V+ I I + Sbjct: 375 SFMLHYNFPPYSVGECGR----MGGVGRREIGHGRLARRGVQAVLPSEEEFPYTIRIVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +++ D LK VA I+ G++ G+ + Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGV-------------PLKAPVAGIAMGLVKEDDGFAV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L+ A + +++ Sbjct: 478 LTDILGDEDHLGDMDFKVAGTEEG-ITALQMDIKIEGINEEIMDIALSQALEARTHILRE 536 Query: 234 QKDVIS 239 VI Sbjct: 537 MSKVIG 542 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 34/230 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A GS L GD +L T + + + + G +P Sbjct: 15 VTLETGRVARQATGSVLCTIGDVQVLATVVGAKSAQAGQSFFPLSVHYQERAYAVGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+I R +R + + Q++I D A Sbjct: 74 --GGFLKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVITVMSTNTDTDADIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187 + AL G + A G +++ Y E + Sbjct: 129 GMLATSAALSVSGI-------------PFNGPIGAARVGFNDDDGYVLNPSYSELDGSLL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D T ++ +E ++D + A +LQ V Sbjct: 176 DMVVAGTKDAVLMV---ESEAQELTEDEMLGAVLFAHK------ELQAAV 216 >gi|298488460|ref|ZP_07006491.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157085|gb|EFH98174.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 701 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G AI + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G + +Q + +++ L A + Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|91974709|ref|YP_567368.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris BisB5] gi|123749482|sp|Q13EM2|PNP_RHOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91681165|gb|ABE37467.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris BisB5] Length = 722 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I V A GS L G+T L TL ++ G Sbjct: 316 RIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+R V+ I + + Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIRPVLPPHHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + A +++ L AKD ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-VTSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 38/236 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T +L T T E V + T G + Sbjct: 14 RPLRLETGKVARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ + AL KG + A G + +++ E Sbjct: 128 ILALVASSAALTLSGA-------------PFKGPIGAARVGFINDEYVLNPVLDEMPETQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229 +D T S ++ V+ A+ + F HF +++ LA+ + Sbjct: 175 LDLVVAGT-SDAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIALAEKAAKE 229 >gi|39938737|ref|NP_950503.1| polynucleotide phosphorylase/polyadenylase [Onion yellows phytoplasma OY-M] gi|81402500|sp|Q6YQX2|PNP_ONYPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|39721846|dbj|BAD04336.1| polyribonucleotide nucleotidyltransferase [Onion yellows phytoplasma OY-M] Length = 715 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 87/251 (34%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R R ++R + + A GS L G T L TL E K+ + + ++ Sbjct: 324 IRPDKRGLEEIRTLESQIDLLPRAHGSALFTRGQTQSLAAVTLGCLSESKIIDGLSDEQN 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A S R+ G + +A+ V+ I + Sbjct: 384 KRFMLHYNFPPFSVGAVGRYTAPSRREIGHGT----LAEKAISQVLPEEKDFPYTIRVVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173 ++++++G + A + + +AL LK VA +S G++ Sbjct: 440 EILESNGSSSQATVCASSLAL-------------MASGVPLKKAVAGMSVGLVFDQATNK 486 Query: 174 ---IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G I +Q + AK + Sbjct: 487 YVILSDIQGLEDHVGDMDLKIAGTNKG-ITALQMDLKIQGIHFKILQEAFLQAKKGRLHI 545 Query: 231 IKLQKDVISNE 241 ++ IS Sbjct: 546 LEHMSQTISQP 556 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 27/219 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 ++ + S LV++ DT +LTT K N +T Y + G K Sbjct: 22 YARNVDASILVRYQDTVVLTTTVFSRK----PNNLDFLPLTVIYQEKLYAAG---KIPGS 74 Query: 80 SGRQGGRS--QEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 R+ GRS EI R+I R+LR + Q+I + D Sbjct: 75 FLRREGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPD------------- 121 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 + + + ++ + G + I++ + + + T Sbjct: 122 FKSELASMLGSSLSLLISEIPFFEAISGVYVGKINDKFIINPTLQQLANSTLHLMVAGTK 181 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ++ ++ A S+ F +N A I L Q Sbjct: 182 H-NVTMIE--AHANEVSEQDFLEAINFAHQYIKKLCLFQ 217 >gi|322806678|emb|CBZ04247.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum H04402 065] Length = 702 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R GR +++R IS + G+ L G T ++T AT + ++ I + Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ + I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSESEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + + I D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S L AK ++ K+ Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539 Query: 238 ISNE 241 I Sbjct: 540 IPEP 543 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 87/236 (36%), Gaps = 31/236 (13%) Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64 R++ + + A + +GDT ++ A+ E + + + ++ G Sbjct: 12 RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G +KRE G+ +S R I R LR + QI+ ++ D Sbjct: 70 KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI G+ +AL S VAA+S G++ G I++ + Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T ++ V+ + ++ ++ + + ++ Q++ ++ Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIAAFQEEAVAK 223 >gi|269467861|gb|EEZ79604.1| Polyribonucleotide nucleotidyltransferase [uncultured SUP05 cluster bacterium] Length = 697 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 28/235 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R+ GR +RE+ + V + GS L G+T L TL K + K Sbjct: 317 RIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKRDAQLIEKLESSERK 376 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + Y P G + R+ G R+ R + + + I + Sbjct: 377 NDYFLLHYNFPPYCVGETGRVGTTKRREIGHG----RLARRGISACLPTIEEYPYTIRVV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++ +++G + A++ G+ ++L D M K VA I+ G++ Sbjct: 433 SEITESNGSSSMASVCGSSLSLMDAGVPM-------------KAPVAGIAMGLVKEGDRF 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +Q+ L AK+ Sbjct: 480 TVLTDILGDEDHLGDMDFKVAGTSRG-VNALQMDIKIQGITQEIMDIALKQAKEA 533 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 78/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 I+L +++ A G+ L DT +L T + + + T G +P Sbjct: 17 ITLETGRIARQAHGAVLASMDDTQVLVTVVGSKEMRPGQDFFPLSVDYIEKTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KREA R + R+I R +R + + Q++I + Sbjct: 76 --GGFLKREA---RPSEKETLTSRLIDRPIRPLFPAGFMNEVQVLITVISANKEVDPDMI 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + G I++ Y E + D+D Sbjct: 131 AMLGVSAALS-------------ISGVPFSGPIGGARVGFKNDEFILNPTYSELADSDLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237 TD ++ +E S++ + A D I ++ + +V Sbjct: 178 MVVAGTDEAVLMV---ESEANELSEEIMLKAVMCAHDEYQVAIKNIAEFVAEV 227 >gi|170759417|ref|YP_001787723.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A3 str. Loch Maree] gi|226702640|sp|B1KWK1|PNP_CLOBM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169406406|gb|ACA54817.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A3 str. Loch Maree] Length = 702 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R GR +++R IS + G+ L G T ++T AT + ++ I + Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ + I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSESEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + + I D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S L AK ++ K+ Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539 Query: 238 ISNE 241 I Sbjct: 540 IPEP 543 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 88/236 (37%), Gaps = 31/236 (13%) Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64 R++ + + A + +GDT ++ A+ E + + + ++ G Sbjct: 12 RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G +KRE G+ +S R I R LR + QI+ ++ D Sbjct: 70 KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI G+ +AL S VAA+S G++ G I++ + Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T ++ V+ + ++ ++ + + +++ Q++ ++ Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIVAFQEEAVAK 223 >gi|238021429|ref|ZP_04601855.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147] gi|237868409|gb|EEP69415.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147] Length = 716 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 95/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ + + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPDPEDFNYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+ + A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ + Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILSQMQAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 87/238 (36%), Gaps = 36/238 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAGAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI---IIDCDV-IQADGG 124 G KRE G+Q + R+I R +R + QI +I CD I +D Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSD-- 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ GA AL G + A G G +++ E +T Sbjct: 128 --IPAMIGASAALV-------------LSGVPFAGPIGAARVGYANGQYLLNPSKTELAT 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D T ++ +E +D + +++ +I + +++EV Sbjct: 173 SQLDLVVAGTKQAVLMV---ESEANILPEDVMLGAVVFGHEQMQAVINAINE-LADEV 226 >gi|330969656|gb|EGH69722.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 701 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G AI + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G + +Q + +++ L A + Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|78212120|ref|YP_380899.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CC9605] gi|123578701|sp|Q3AM38|PNP_SYNSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78196579|gb|ABB34344.1| RNA binding S1 [Synechococcus sp. CC9605] Length = 721 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 34/237 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 REI LT + A GS LV+ GDT +L TAT E + + G +P Sbjct: 13 REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123 G+ ++RE+ R R+ R+I R +R + Q++ C + AD Sbjct: 73 ---GSYMRRES---RPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERVPAD- 125 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A G +AA+ G+L +++ Y E Sbjct: 126 ---VLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + + ++ + I +LIK Q+ ++ + Sbjct: 170 RGDLDLVVAGTPDG-VVMVEAGANQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 29/247 (11%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55 R+ GR +++R+IS V + GS L + G T +L+TATL NT+ Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G + R+ G + RA+ V+ + + Sbjct: 383 KLYLH-HYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPEKDTFPYVVRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ ++L D LK V+ + G++ Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGV-------------PLKAPVSGAAMGLIKEGDEV 484 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D ++ G I +Q + S +N A+ ++ Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLSVKTVAEAVNQARPARLHIL 543 Query: 232 KLQKDVI 238 + + I Sbjct: 544 EKMLEAI 550 >gi|71734516|ref|YP_276307.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482257|ref|ZP_05636298.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627537|ref|ZP_06460491.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646965|ref|ZP_06478308.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aesculi str. 2250] gi|123747552|sp|Q48E81|PNP_PSE14 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71555069|gb|AAZ34280.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|330868250|gb|EGH02959.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330888654|gb|EGH21315.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. mori str. 301020] gi|330987059|gb|EGH85162.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011503|gb|EGH91559.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 701 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G AI + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G + +Q + +++ L A + Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|73662800|ref|YP_301581.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|117940130|sp|Q49X62|PNP_STAS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|72495315|dbj|BAE18636.1| polyribonucleotide nucleotidyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 697 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 20/231 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R GR+ +++R + V A GS L G T L+ TL I + + Sbjct: 318 IRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGSMSEYQILDGLGEEEQ 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID 115 Y S G + R+ G + RAL ++ DL + I Sbjct: 378 KRFMHHYNFPNYSVGETGPVRSPGRREIGHG----ALGERALSHIIPDLKDFP-YTVRIV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V++++G + A+I G+ +AL D ++ + V + I + Sbjct: 433 SEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LT 483 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 D+ ED+ D+D T G I +Q + +++ L+ A++ Sbjct: 484 DIQGMEDALGDMDFKVAGTAEG-ITAIQMDIKIDGLTKEIIKEALDQAREG 533 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TA + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLMVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A + G + G +++ + + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVKVGYIDGEYVINPTVAQKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + I L+ Q++++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHSEIQRLVNFQQEIV 223 >gi|262375116|ref|ZP_06068350.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii SH145] gi|262310129|gb|EEY91258.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii SH145] Length = 697 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I + V A GS L G+T L T TL + TK Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ + LN A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMESALNQAYAGRMHILNE 538 Query: 234 QKDVIS 239 VIS Sbjct: 539 MNQVIS 544 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 34/199 (17%) Query: 48 PMWIRNTKHGWITAEYGMLPRSTG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103 P +T Y + G KRE GRQ I R+I R +R + Sbjct: 49 PKAKAGQDFFPLTVNYQEKQYAAGRIPGGYGKRE---GRQSEAETLISRLIDRPIRPLFP 105 Query: 104 LSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161 I + VI +D AA+ G AL +G + Sbjct: 106 EGYFNE--IQVTATVISSDKTMDADIAAMLGTSAALSIAGT-------------PFRGPI 150 Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-- 219 G++ G I++ + + D+D T++ ++ +E S+D Sbjct: 151 GGARVGLINGEYILNPNLEQLKESDLDLVVAGTETAVLMV---ESEAKELSEDQMLGAVL 207 Query: 220 -----LNLAKDRIADLIKL 233 + +A I + Sbjct: 208 FGHDEMQIAIQAIKEFAAA 226 >gi|124022312|ref|YP_001016619.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9303] gi|187610312|sp|A2C794|PNP_PROM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123962598|gb|ABM77354.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 721 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 97/237 (40%), Gaps = 34/237 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 REI LT + A GS +++ GDT +L TAT E + + G +P Sbjct: 13 REIRLTTGRYAPQAGGSVMMECGDTSVLVTATRSTGREGIDFLPLICDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123 G+ ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 73 ---GSFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVPAD- 125 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A +G +AA+ G+L +++ Y E Sbjct: 126 ---VLAVTGASMATLLAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + + ++ + + +LIK Q+ ++ + Sbjct: 170 RGDLDLVVAGTPDG-VVMVEAGANQ--LPEGDVIEAIDFGYEAVCELIKAQQSILKD 223 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 29/247 (11%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55 R+ GR+ +++R I+ V K GS L + G T +L+TATL + Sbjct: 323 RVDGRKLDEVRTITSAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPGPE 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G + R+ G + RA+ V+ + + Sbjct: 383 KTYLH-HYNFPPYSVGETRPMRSPGRREVGHGS----LAERAIIPVLPPKDTFPYVLRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 438 SEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEDAEI 484 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + +N A+ ++ Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTKDG-ITALQMDMKITGLPVKTIAEAVNQARPARIHIL 543 Query: 232 KLQKDVI 238 + + I Sbjct: 544 EKMLEAI 550 >gi|28871621|ref|NP_794240.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|213966643|ref|ZP_03394794.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato T1] gi|301383153|ref|ZP_07231571.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tomato Max13] gi|302061771|ref|ZP_07253312.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tomato K40] gi|302133785|ref|ZP_07259775.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|81729685|sp|Q87WQ8|PNP_PSESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|28854873|gb|AAO57935.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|213928493|gb|EEB62037.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv. tomato T1] gi|330963979|gb|EGH64239.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016652|gb|EGH96708.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 701 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G AI + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G + +Q + +++ L A + Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T ++ + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q++ Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G V A +++ Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +I K+ Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222 >gi|291408704|ref|XP_002720651.1| PREDICTED: exosome component 8 [Oryctolagus cuniculus] Length = 276 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPP-ADAPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + SG G +Q + I + ++ L G ++ Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSRIIQKEDLCISPGKLAWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 256 VTRHKEVKKLMDEVIKS 272 >gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255] Length = 265 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 87/266 (32%), Gaps = 43/266 (16%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI---RNTKHG 57 +RL GR+ N++R + + + GS + G+T ++ + + + H Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHA 73 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + + + +R +R S RQ R I + A +S + I I Sbjct: 74 VVEVDVNVAGFAGVDRKRRAGGSDRQSSR---IATTLRSAFQSHLHTYLYPHSTISIHVS 130 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHM-----------------------EDCSNKFQLS 154 V+ ADG AA+ +AL D M ++ LS Sbjct: 131 VLSADGSLLAAALNACTLALVDAGIPMPGLLCGCTSGMSGSASTPRDPRHDELDPLLDLS 190 Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 + + +++ P+ + + ED M + Sbjct: 191 LPEEQELPSLTVATTTAVPVGENNMDEDEEAMKVCVLTM--------------ESKVHAT 236 Query: 215 HFFAMLNLAKDRIADLIKLQKDVISN 240 + ML + D + + +L + VI Sbjct: 237 YLETMLAVGIDGCSQIRELLEGVIKG 262 >gi|197100218|ref|NP_001125193.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Pongo abelii] gi|55727278|emb|CAH90395.1| hypothetical protein [Pongo abelii] Length = 703 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R +S + K GS L + G T +L T T + ++V I Sbjct: 278 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 337 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + +AL V+ I Sbjct: 338 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 391 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K G + Y Sbjct: 392 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 448 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 449 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 507 Query: 233 LQKDVISNE 241 + IS Sbjct: 508 IMNKTISKP 516 Score = 59.0 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 19/144 (13%) Query: 69 STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124 + R+ + G +EI R+I R++R + Q++ C+++ DG Sbjct: 27 AAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNE 84 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI GA VAL G V A+ G++ G +V+ E S+ Sbjct: 85 PDVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSS 131 Query: 185 IDVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 132 STLNLVVAGAPKSQIVMLEASAEN 155 >gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase; PNPase; CAP87K) [Neisseria meningitidis 8013] Length = 706 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|238755159|ref|ZP_04616505.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473] gi|238706606|gb|EEP98977.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473] Length = 706 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + I + + Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDEENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ L+ AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQEALSQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 66/212 (31%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T + ++ +E S+D + Sbjct: 177 LVVAGTAAAVLMV---ESEADILSEDQMLGAV 205 >gi|330991187|ref|ZP_08315140.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp. SXCC-1] gi|329761773|gb|EGG78264.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp. SXCC-1] Length = 761 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 87/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + A GS L G+T L ATL I + G Sbjct: 361 RIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGQDEQIVDALEGEYRN 420 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R GR R ++ RA+ ++ + + + Sbjct: 421 NFMLHYNFPPFSVGE-CGRMGSPGR---REIGHGKLAWRAIHPLLPGKDTFPYTMRVVSE 476 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A + G +AL D LK VA I+ G++ Sbjct: 477 ITESNGSSSMATVCGTSLALMDAGV-------------PLKRPVAGIAMGLIKEEDDFAV 523 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G + +Q + + + + L A+ ++ Sbjct: 524 LSDILGDEDHLGDMDFKVAGTEQG-VTALQMDIKITSITPEIMKIALGQARQGRLHILGE 582 Query: 234 QKDVISN 240 ++ Sbjct: 583 MAKALTE 589 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 27/227 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ +V +GDT +L TA +++ + + G + Sbjct: 63 RPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKAYAAGKI 122 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R+I R +R + + Q++ + Sbjct: 123 P---GGFFKRE---GRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSHDMENDPA 176 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G AL G V A G G +++ + + Sbjct: 177 VVALIGCSAALTLSGI-------------PFFGPVGAARVGYSNGKYVLNPTISQLKESE 223 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T G ++ +E S+D + + +I L Sbjct: 224 LDLVVAGTSEGVLMV---ESEAVELSEDVMLGAVTFGHEAFQPVIDL 267 >gi|114649399|ref|XP_001147508.1| PREDICTED: exosome component 8 isoform 3 [Pan troglodytes] gi|114649401|ref|XP_001147275.1| PREDICTED: exosome component 8 isoform 1 [Pan troglodytes] Length = 246 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 24/228 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115 + P + SG G +Q + I + ++ L + + + Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211 S + IVD E+ VM + G + + Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGMFPPL 244 >gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa] gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa] Length = 853 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 17/238 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56 R GR +R I + + A GS L G+T L TL +K V + + Sbjct: 376 RSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 435 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G + RAL ++ + ++ Sbjct: 436 KRFYLQYSFPPSCVGEVGRIGAPSRREIGHGM----LAERALEPILPSENDFPYTVRVES 491 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 + +++G + A++ G +AL D ++ + G V G P++ Sbjct: 492 TITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAM-----GMVLDTEEFGGDGTPLIL 546 Query: 176 -DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D+ ED++ D+D + G + Q + + L A+D ++ Sbjct: 547 SDITGSEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLPVMRTALLQARDGRKHILA 603 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 80/224 (35%), Gaps = 27/224 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPR 68 R I + + A GS V G+T + T+ L++ VP + + R Sbjct: 26 RHIMVETGHLGRQASGSVTVTDGETIIYTSVCLDD-VPSEPSDFYPLSVNYQERFSAAGR 84 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 ++G KRE GR I R+I R LR + QI+ V+ DG Sbjct: 85 TSGGFFKRE---GRLKDHEVLICRLIDRPLRPTMLKGFYHETQIL--SWVLSYDGLHSPD 139 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + A+T A +AL +A + G++ IV+ E Sbjct: 140 SLAVTAAGIALA-------------LSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESK 186 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +D TDS I ++G ++ + + +D + + Sbjct: 187 LDLLLAGTDSA-IFMIEG--YCNFLPEEKLLEAVQIGQDAVRTI 227 >gi|149064770|gb|EDM14921.1| exosome component 8 (predicted), isoform CRA_a [Rattus norvegicus] Length = 276 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P + G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + +G G +Q + I + ++ L G ++ Sbjct: 82 NVDLPPLCSS-----RFRTGPPGEEAQVTSQFIADVIENSQIIKKEDLCISPGKLAWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ + A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRANPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLSTGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 256 VTRHKEVSKLLDEVIQS 272 >gi|28193987|gb|AAO33354.1|AF465249_1 polynucleotide phosphorylase [Mus musculus] Length = 748 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R IS + K GS L + G T +L T T + +++ + Sbjct: 323 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAVNG 382 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL V+ I Sbjct: 383 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 436 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G AL D + + V K + G + Y Sbjct: 437 VTSEVLESNGSSSMASACGGSXALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 493 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 494 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 552 Query: 233 LQKDVISNE 241 + IS Sbjct: 553 IMNKTISKP 561 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+G +++ GDT ++ TA T + A G +P Sbjct: 20 RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 79 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE S R R+I R++R + Q++ C+++ DG Sbjct: 80 ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 131 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A+ GA VAL G V A+ GM+ G +V+ E S+ Sbjct: 132 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 178 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 179 TLNLVVAGAPKSQIVMLEASAEN 201 >gi|330813312|ref|YP_004357551.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter sp. IMCC9063] gi|327486407|gb|AEA80812.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter sp. IMCC9063] Length = 695 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ R+ N++R+I V GS L G+T L ATL +E+ + + Sbjct: 313 RIDRRKLNEVRDIKCEVGVLPKVHGSSLFTRGETQALVVATLGTSDDEQRLETLDGAERS 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G V R R+ G ++ RA+ S + I + Sbjct: 373 RFMLHYNFPPYSVGE-VGRIGTGRREIGHG----KLAWRAINSSLPSKEEFPYTFRIVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + GA +AL D +K +A I+ G++ Sbjct: 428 ITESNGSSSMATVCGASLALMDAGV-------------PIKTPIAGIAMGLIKEGDDYSI 474 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + D L+ AK+ ++ Sbjct: 475 LSDILGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFDIMEKALDQAKEGRIHILGE 533 Query: 234 QKDVISN 240 ++ Sbjct: 534 MAKALTE 540 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 27/229 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 +++L V++ A+G+ ++ G+T +L TA + + + + G +P Sbjct: 15 KLTLETGRVARQADGAVMLTCGETVILATAVAAKQAKPDMDFFPLTVNYQEKYYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA R I R+I R +R + S Q++ + Sbjct: 75 ---GGYFKREA---RPTEAETLISRLIDRPIRPLFPSSFRNETQVLPTVISYDKENDP-- 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + L + + G VAA GM+ G +++ + + Sbjct: 127 -----------EALALIASSAALAISGIPFMGPVAAAKVGMIDGEFVLNPTKEQIKDSQL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + T+ ++ +E + S+ + D+ ++I L KD Sbjct: 176 ELIVAGTEDAVLMV---ESEASGLSEKQMLDAVKFGHDKAKEVINLIKD 221 >gi|315149071|gb|EFT93087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0012] Length = 704 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 89/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E +V + Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQVIDGLGVQDS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L A+ E K V + + G +P Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + QI + D Sbjct: 74 ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S++ L D I +L+ Q+++++ Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223 >gi|187918659|ref|YP_001884225.1| polynucleotide phosphorylase/polyadenylase [Borrelia hermsii DAH] gi|119861507|gb|AAX17302.1| polyribonucleotide nucleotidyltransferase [Borrelia hermsii DAH] Length = 727 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 27/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR Q+R+I + K GS L G+T L +++E++ I K Sbjct: 325 LRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 384 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + R+L +++ I + Sbjct: 385 LNFMLHYNFPPFSVGE-TGRLMTGRREVGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 440 EILESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLISDGDKYV 486 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + + ++ L A+ ++ Sbjct: 487 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALEQARIGRMHILS 545 Query: 233 LQKDVIS 239 + VIS Sbjct: 546 IMDSVIS 552 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 31/231 (13%) Query: 16 LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70 L + K A G+ L +G + +L T ++ E + + ++ G +P Sbjct: 26 LETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYNEKYYAAGKIP--- 82 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128 G +KRE G+ + + R+I R +R + D R+I + + D Sbjct: 83 GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 137 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + A+ A+ F G +AA+ L IV+ + E +D Sbjct: 138 GMNAAFAAV-------------FLSDIPFNGPIAAVRLAYLNNEFIVNPSFDEIQDSILD 184 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 V I V+G A S++ + ++ A + I + LQK+ +S Sbjct: 185 I-VVAGSLDGITMVEGGANE--VSEEVLLSAIDKAYEYIKQICNLQKEFVS 232 >gi|77359947|ref|YP_339522.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas haloplanktis TAC125] gi|123588883|sp|Q3IJ73|PNP_PSEHT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|76874858|emb|CAI86079.1| polynucleotide phosphorylase, has polyadenylase activity; part of the degradosome [Pseudoalteromonas haloplanktis TAC125] Length = 708 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R + + V GS + G+T L TATL + + T Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G + R + +V+ I + + Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHG----NLAKRGIAAVMPTLTEFPYSIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL + +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGV-------------PIKASVAGIAMGLVKEDDKFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +Q+ L AK ++++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGT-AGGITALQMDIKIEGITQEIMQIALKQAKAARLHILEV 538 Query: 234 QKDVIS 239 IS Sbjct: 539 MDKAIS 544 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLPR 68 ++L +++ A+G+ L GDT +L T + + +T Y R Sbjct: 15 VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQP---GQDFFPLTVNYQERMYAAGR 71 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR I R+I R +R + + Q+I + + Sbjct: 72 IPGGFLKRE---GRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEIQPDMV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G + G +++ E +D Sbjct: 129 ALIGTSAALAISGI-------------PFSGPIGATRVGYIDGEYVLNPTLKELEESKLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E ++D + ++ +I K+ Sbjct: 176 LVVAGTDNAVLMV---ESEADVLAEDIMLGAVVYGHEQAQAIITAIKE 220 >gi|239907801|ref|YP_002954542.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus RS-1] gi|239797667|dbj|BAH76656.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus RS-1] Length = 751 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 89/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56 +RL GR +R I + V GS L G+T L A T +E+ + + Sbjct: 320 IRLDGRNTTTVRPIGIEVGVLPRTHGSALFARGETKALCVATLGSTGDEQKIETLNGETY 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G S R+ G + R++ V+ + I Sbjct: 380 KRFMLHYNFPPYCVGEVKMLRGPSRREIGHG----ALAERSILPVLPGPEEFPFTMRIVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 V++++G + A++ GA +AL D +K VA I+ G++ Sbjct: 436 QVMESNGSSSMASVAGASLALMDAGV-------------PIKAPVAGIAMGLIKEDDDFL 482 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + Q LN AKD ++ Sbjct: 483 VLTDILGDEDAMGDMDFKVAGTADG-VTGIQMDIKITGIPQAVMRQALNQAKDARLHILG 541 Query: 233 LQKDVISNE 241 V+ Sbjct: 542 RMAAVLPEP 550 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 30/230 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69 +++ ++ A+G+ ++ G T +L TA L E+ + + + G +P Sbjct: 19 VTIETGRLANQADGAIWIQSGGTVVLVTACTQALAEEKGFFPLVVDYQEMAYAAGRIP-- 76 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRT 127 G+ +RE GR R + R+I R R + QII V+ ADG Sbjct: 77 -GSYFRREI--GRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIAT--VLSADGEVEPDV 131 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA ALH +G +A G + G +++ + Sbjct: 132 LALTGASAALH-------------LSKIPFQGPIAGGRVGYIDGQFVLNPTVAQ-IAAGA 177 Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D N V S +V V+G+ S++ L I L+ LQ+ Sbjct: 178 DLNLVFAASRDAVVMVEGAGR--FVSEELLADALEFGHKAILPLLDLQEQ 225 >gi|330443786|ref|YP_004376772.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum E58] gi|328806896|gb|AEB41069.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum E58] Length = 693 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 90/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56 +R R +R IS+ + GSCL G+T + T E + + Sbjct: 313 IRADKRALTTIRPISIEVALLPRTHGSCLFTRGETQTVAVCTLGNETMAQRYENLNGEGS 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + G G R ++ +AL + + I I+ Sbjct: 373 SKFYLQYSFPPFSVGEVGR----IGSPGRREIGHGKLAEKALAHALPDATQFPYTIRIES 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 ++ +++G + A++ G +AL D +K +A I+ G++ Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGV-------------PIKTPIAGIAMGLILDAEEAI 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D G I Q + + D L AK+ ++++ Sbjct: 476 ILSDISGLEDHLGDMDFKVAGNLEG-ITAFQMDIKIEGITLDIMKQALAQAKEGRQEILR 534 Query: 233 LQKDVIS 239 + + ++ Sbjct: 535 IMHENLA 541 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 88/237 (37%), Gaps = 36/237 (15%) Query: 9 NQMREISLTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEK---VPMWIRNTKHGWITA 61 + R + +++ A GS +V+ DT + + A L E +P + + Sbjct: 11 EEGRVLIFETGKIARQAGGSVVVRSQDTLVFTSVCAADLSETSDFLPFRVDYQEK----- 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + ++ G +KRE GR + + R+I R+LR + + QI+ Sbjct: 66 -FSSTGKTLGGFIKRE---GRPTEKEILVSRLIDRSLRPSLPNRLMQDIQILSYVW--SY 119 Query: 122 DGGTR--TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DG T AI GA AL + V+ + G + G IV+ Sbjct: 120 DGQTLPDPLAICGAGAALA-------------LSNIPQNNIVSGVRIGYIDGQWIVNPTK 166 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 E D T++ I+ ++G A F+++ ++ I + K KD Sbjct: 167 TELDNSPFDLVLAGTENA-ILMIEG--HCAFFTEEQVLEAIDYGHKHIITICKGLKD 220 >gi|315648088|ref|ZP_07901189.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex V453] gi|315276734|gb|EFU40077.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex V453] Length = 701 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R I + GS L G T L T A + ++ I + Sbjct: 313 VRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RAL V+ I + Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPNEVEFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +VI+++G T A+I + +A+ D +K VA ++ G++ Sbjct: 429 EVIESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGDHVS 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + + L AK+ ++ Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTPEG-VTAIQMDIKIDGIDRAILQEALQQAKEGRMHILG 534 Query: 233 LQKDVISNE 241 + I Sbjct: 535 KMAEAIQQP 543 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R + ++K A + +V++G+T +L T T + + + + G +P Sbjct: 12 RPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+ R +R + Q++ + D Sbjct: 72 ---GGFIKRE---GRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G AL G + ++ G + G +V+ D + D+ Sbjct: 126 AAMIGTSAALS-------------ISDVPFNGPIGGVAVGRVDGNFVVNPDIAQQEASDI 172 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I+ V+ AE ++ + + I ++ +++++ Sbjct: 173 YLVVSGTKDA-IMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVA 221 >gi|310817255|ref|YP_003965219.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium vulgare Y25] gi|308755990|gb|ADO43919.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium vulgare Y25] Length = 713 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 27/234 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R I + A GS L G+T L TL + HG + Sbjct: 318 RIDGRSLDEVRPIVSETGLLPRAHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPANTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMLDAGV-------------PLKAPVAGVAMGLVLEKDGSWA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T++G I +Q + A + + L A+ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMRKALAQARTG 533 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 77/247 (31%), Gaps = 48/247 (19%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKIARQADGSVIATLGETSVMANVTFAKAPKPGQDFFPLTVHYQEKYYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R R I R+I R R + +++ V+ D Sbjct: 75 --GGFFKREA---RPTERETLISRLIDRPCRPLFVEGFKHE--VLVMATVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182 A+ A AL G + A G G ++ E Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGYSNGAYTLNPAIDELHDIR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM---------------LNLAKDRI 227 + + + V+ + V + S E S+D ++LA+D Sbjct: 175 NKSEQRLDLVVAGTKDAVMMVES-EAYELSEDEILGAVVFAHEQMQPVIDLIIDLAEDAA 233 Query: 228 ADLIKLQ 234 + Q Sbjct: 234 KEPFDFQ 240 >gi|71064655|ref|YP_263382.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter arcticus 273-4] gi|123761801|sp|Q4FVL0|PNP_PSYA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71037640|gb|AAZ17948.1| putative polyribonucleotide nucleotidyltransferase [Psychrobacter arcticus 273-4] Length = 700 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R + + V + GS L G+T L T TL + + ++ G I Sbjct: 320 RIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTTLGNTRDVNMIDSLAGTIRD 379 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++++ S I + + Sbjct: 380 HFMLHYNFPHFSVGETGREGIPKRREIGHG----RLARRGVQAMLPDSDRFPYVIRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D +K VA I+ G++ G Sbjct: 436 ITESNGSSSMASVCGASLALMDAGV-------------PIKAPVAGIAMGLVKEGERFAV 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + + D L A ++ Sbjct: 483 LSDILGDEDHLGDMDFKVAGSKDG-ITALQMDIKIEGITPDIMEQALKQAHAGRIHILDA 541 Query: 234 QKDVI 238 V+ Sbjct: 542 MNKVL 546 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 65/217 (29%), Gaps = 26/217 (11%) Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++ + S LV G +L A ++ E + + G +P Sbjct: 17 QVVIETGRIARQANSILVHMGGVTVLVAAVVKSDAKEGQNFFPLTVNYQEKMYAAGKIPG 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + G R GR R+I R +R + + QI A Sbjct: 77 AYGKR------EGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSSDKTQSADIA 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G VAA G + G +++ E D+D Sbjct: 131 ALIGASAALA-------------ISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 T S ++ +E A S+D + Sbjct: 178 LVVAGTKSAVLMV---ESEAAELSEDQMLGAVLYGHQ 211 >gi|332970461|gb|EGK09453.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC 23330] Length = 708 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 95/244 (38%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+ + A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ + Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILAQMQTA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 85/238 (35%), Gaps = 36/238 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDIKEGQDFFPLTVDYFERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI---IIDCDV-IQADGG 124 G KRE G+Q + R+I R +R + QI +I CD I +D Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSD-- 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ GA AL G + A G + +++ + S Sbjct: 128 --IPAMIGASAALV-------------LSGVPFAGPIGAARVGYVNNAYVLNPTKQQLSR 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D T+ ++ +E +D + +++ +I + ++ EV Sbjct: 173 SQLDLVVAGTEQAVLMV---ESEADILPEDVMLGAVVFGHEQMQTVITAINE-LAQEV 226 >gi|119953582|ref|YP_945792.1| polynucleotide phosphorylase/polyadenylase [Borrelia turicatae 91E135] gi|119862353|gb|AAX18121.1| polyribonucleotide nucleotidyltransferase [Borrelia turicatae 91E135] Length = 727 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 91/247 (36%), Gaps = 27/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR Q+R+I + + GS L G+T L +++E++ I K Sbjct: 325 LRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 384 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + R+L +++ I + Sbjct: 385 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 440 EILESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLVSEGDKYV 486 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + + ++ L A+ ++ Sbjct: 487 ILSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALAQARIGRMHILS 545 Query: 233 LQKDVIS 239 + VIS Sbjct: 546 IMDSVIS 552 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 31/230 (13%) Query: 16 LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70 L + K A G+ L +G + +L T + E + + ++ G +P Sbjct: 26 LETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYNEKYYAAGKIP--- 82 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128 G +KRE G+ + + R+I R +R + D R+I + + D Sbjct: 83 GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 137 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + A+ A+ F G +AA+ L IV+ + E +D Sbjct: 138 GMNAAFAAV-------------FLSDIPFNGPIAAVRIAYLNSEFIVNPSFDEIQDSILD 184 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 V I V+G A S++ A ++ A + I + LQK+ I Sbjct: 185 I-VVAGSLDGITMVEGGANE--VSEEVLLAAIDQAYEYIKQICNLQKEFI 231 >gi|25012192|gb|AAN71212.1| GM16802p [Drosophila melanogaster] Length = 717 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 90/250 (36%), Gaps = 17/250 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR +Q+R IS + K GS L + G T + T +L+ + ++ Sbjct: 300 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 359 Query: 57 GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 G + A Y P +TG + G G R + R+L + Sbjct: 360 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRREMGHGALAERSLLPTLPND--YPFT 413 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + +V++++G + A++ G +AL D + + + V K + + Sbjct: 414 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 472 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G +Q + L A D + ++ Sbjct: 473 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 531 Query: 232 KLQKDVISNE 241 + + I Sbjct: 532 DIMSEAIREP 541 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 66 LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 + S+G R+ + G +EI R+I R+LR + Q++ + + A Sbjct: 48 MTFSSG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVH 106 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AI A +AL G + A+ G+ G +++ E Sbjct: 107 SPDVLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQ 153 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236 T +D T +V ++G + Q + A+ I ++ +LQK Sbjct: 154 TSQLDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 208 >gi|257096733|sp|A1R0N0|PNP_BORT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 717 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 91/247 (36%), Gaps = 27/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR Q+R+I + + GS L G+T L +++E++ I K Sbjct: 315 LRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + R+L +++ I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 430 EILESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLVSEGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + + ++ L A+ ++ Sbjct: 477 ILSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALAQARIGRMHILS 535 Query: 233 LQKDVIS 239 + VIS Sbjct: 536 IMDSVIS 542 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 31/230 (13%) Query: 16 LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70 L + K A G+ L +G + +L T + E + + ++ G +P Sbjct: 16 LETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYNEKYYAAGKIP--- 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128 G +KRE G+ + + R+I R +R + D R+I + + D Sbjct: 73 GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + A+ A+ F G +AA+ L IV+ + E +D Sbjct: 128 GMNAAFAAV-------------FLSDIPFNGPIAAVRIAYLNSEFIVNPSFDEIQDSILD 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 V I V+G A S++ A ++ A + I + LQK+ I Sbjct: 175 I-VVAGSLDGITMVEGGANE--VSEEVLLAAIDQAYEYIKQICNLQKEFI 221 >gi|257096732|sp|B2S1E9|PNP_BORHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 717 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 27/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR Q+R+I + K GS L G+T L +++E++ I K Sbjct: 315 LRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R+ G + R+L +++ I + Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREVGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A + ++L +K VA I+ G++ Sbjct: 430 EILESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLISDGDKYV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I Q + + ++ L A+ ++ Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALEQARIGRMHILS 535 Query: 233 LQKDVIS 239 + VIS Sbjct: 536 IMDSVIS 542 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 31/231 (13%) Query: 16 LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70 L + K A G+ L +G + +L T ++ E + + ++ G +P Sbjct: 16 LETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYNEKYYAAGKIP--- 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128 G +KRE G+ + + R+I R +R + D R+I + + D Sbjct: 73 GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + A+ A+ F G +AA+ L IV+ + E +D Sbjct: 128 GMNAAFAAV-------------FLSDIPFNGPIAAVRLAYLNNEFIVNPSFDEIQDSILD 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 V I V+G A S++ + ++ A + I + LQK+ +S Sbjct: 175 I-VVAGSLDGITMVEGGANE--VSEEVLLSAIDKAYEYIKQICNLQKEFVS 222 >gi|291532399|emb|CBL05512.1| polyribonucleotide nucleotidyltransferase [Megamonas hypermegale ART12/1] Length = 574 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKH 56 +R GR ++R IS + GS L G T +L A +E+V I + Sbjct: 310 IRPDGRGLEEVRPISCEVGILPRTHGSALFTRGQTQILNVTTLGALGDEQVIDGIGDDTS 369 Query: 57 GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G R R G R + RAL V+ + + Sbjct: 370 KRYIHHYNFPGYSVGEARPMRS-----PGRREIGHGALAERALVPVIPSVEEFPYTLRLV 424 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + ++ G+ ++L +K V+ + G++ Sbjct: 425 SEVLESNGSSSMGSVCGSTLSLMHAGV-------------PIKKPVSGCAMGLVKDGDAY 471 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G I +Q + S++ A L AK ++ Sbjct: 472 TILTDIQGMEDALGDMDFKVAGTPDG-ITAIQMDIKVDGLSREILAAALAQAKRGREFIL 530 Query: 232 KLQKDVISNE 241 + IS Sbjct: 531 SKMLECISEP 540 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 27/234 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + K A G+ LV++G+T +L TAT E V + + G + Sbjct: 11 RSFVVETGKMAKQANGAVLVRYGETVVLVTATASAEPREGVDFFPLTVDYEEKMYAVGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I R +R + QI+ ++ D Sbjct: 71 P---GGFIKRE---GRPAESAILNSRLIDRPIRPLFPEGYRNDVQIVATVLSVEQDNAPE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A + GA AL G +A + G + G +++ + Sbjct: 125 IAGMIGASCALS-------------ISDIPFLGPIAGVRVGRIDGEFVINPTVEQREKS- 170 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D N + S V + + S++ + + I L+K Q++++ Sbjct: 171 -DLNLTVAGSYDAVMMVEAG-ANELSEEVVLDAILFGHEEIKRLVKFQQEMMEK 222 >gi|187471092|sp|Q2IQ01|PNP_ANADE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 721 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR +R+I+ + GS L G+T L TL G + Sbjct: 324 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G + RALR+V+ + + D Sbjct: 384 KFMLHYNFPPFSVGEVKFLRSPGRREIGHG----ALAERALRAVMPPEDQFPYTVRVVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 +++++G + A++ G ++L D +K VA I+ G++ G Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIKEGEKIAI 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L+ A + ++ Sbjct: 487 LSDILGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTREILEQALSQAAEGRKHILGE 545 Query: 234 QKDVIS 239 +S Sbjct: 546 MAKALS 551 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 32/238 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 E+ L V+K A GS V+ GD+ +L TA +E + + + G +P Sbjct: 14 EVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ +RE GR + R++ R+ R + Q+I + T Sbjct: 74 ---GSFFRRE---GRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA ALH G +A + + G + + D Sbjct: 128 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLA--QRADA 172 Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241 D + VM S IV V+G A+ S+ L + + L+ Q + N+ Sbjct: 173 DLDVVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDALRAATGNK 228 >gi|53715606|ref|YP_101598.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis YCH46] gi|60683550|ref|YP_213694.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis NCTC 9343] gi|253566582|ref|ZP_04844035.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5] gi|265767451|ref|ZP_06095117.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16] gi|81313402|sp|Q5L7Z7|PNP_BACFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81381032|sp|Q64N73|PNP_BACFR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52218471|dbj|BAD51064.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis YCH46] gi|60494984|emb|CAH09802.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides fragilis NCTC 9343] gi|251944754|gb|EES85229.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5] gi|263252756|gb|EEZ24268.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16] gi|301165064|emb|CBW24632.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides fragilis 638R] Length = 708 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 92/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLAHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ ++ + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHG----NLAHRALKRMIPED--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + LN AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538 Query: 232 KLQKDVISNE 241 ++ IS Sbjct: 539 GKIEETISEP 548 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHGWITAEYGML 66 R I+L K A+GS +++ G+T LL T ++ VP ++ A +G Sbjct: 15 RTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAAFGRF 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R++ RALR + + ++ ++ + ADG Sbjct: 75 P---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILFSADG--- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 V + D L + + G ++ + + G +++ + + D Sbjct: 124 --------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEQAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T +I+ V+G E + S+ + +A + I K Q + Sbjct: 176 MDIMVAATYE-NIMMVEG--EMSEVSEAELLEAMKVAHEAIKVHCKAQME 222 >gi|194904919|ref|XP_001981085.1| GG11868 [Drosophila erecta] gi|190655723|gb|EDV52955.1| GG11868 [Drosophila erecta] Length = 771 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 88/250 (35%), Gaps = 17/250 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54 +R GR +Q+R IS + K GS L + G T + T +L+ + ++ Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLTALES 413 Query: 55 ---KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 K Y P +TG + G G R + R+L + Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRRELGHGALAERSLLPTLPNE--YPFT 467 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + +V++++G + A++ G +AL D + + + V K + + Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 526 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G +Q + L A D + ++ Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKVPGIPLKVVMESLQKATDAKSKIL 585 Query: 232 KLQKDVISNE 241 + + I Sbjct: 586 DIMSEAIREP 595 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 30/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPR 68 R ++ + ++++A G+ + + GDT ++ TA V N G+ + +Y + Sbjct: 50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTA-----VAKSKPNPGQGFMPLVVDYRLKNA 104 Query: 69 STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 ++G R+ + G +EI R+I R+LR + Q++ + + A Sbjct: 105 ASG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPD 163 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A VAL G + A+ G+ G +++ E T Sbjct: 164 VLAINAASVALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQ 210 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236 +D T +V ++G + Q + A+ I ++ +LQK Sbjct: 211 LDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262 >gi|325568458|ref|ZP_08144825.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325158227|gb|EGC70380.1| polyribonucleotide nucleotidyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 715 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GRQ +++R ++ + GS L G T L+ T E ++ + + Sbjct: 328 IRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 387 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 388 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPDETDFPYTIRLVA 443 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 444 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 490 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK +++ Sbjct: 491 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALSQAKKARMEILN 549 Query: 233 LQKDVIS 239 ++ Sbjct: 550 ELTSTLA 556 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + + ++K A G+ LV++GDT +L+ A ++T +T Y + Sbjct: 24 RPLEVEVGQLAKQANGAVLVRYGDTVVLSAAV----ASKEAKDTDFFPLTINYEEKMYAV 79 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 80 GKVPGGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCTPA 136 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +AL G +A + G + G +++ + D Sbjct: 137 MAAMLGSSLALS-------------ISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTD 183 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 ++ T I V+ A+ S++ L D I +L+ Q++V++ Sbjct: 184 IELTVAGTKKA-INMVESGAKE--VSEEDMLGALLFGFDAIQELVAFQEEVVA 233 >gi|33863644|ref|NP_895204.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9313] gi|81577177|sp|Q7V606|PNP_PROMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33635227|emb|CAE21552.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 723 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 34/237 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 REI LT + A GS +++ GDT +L TAT E + + G +P Sbjct: 13 REIRLTTGRYAPQAGGSVMMECGDTAVLVTATRSTGREGIDFLPLICDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123 G+ ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 73 ---GSFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVPAD- 125 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A S +G +AA+ G+L +++ Y E Sbjct: 126 ---VLAVTGASMATLLA-------------SIPFQGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + Q ++ + + +LIK Q+ ++ + Sbjct: 170 RGDLDLVVAGTPDG-VVMVEAGANQ--LPQGDVIEAIDFGYEAVCELIKAQQTILKD 223 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 29/247 (11%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55 R+ GR+ +++R IS V K GS L + G T +L+TATL + Sbjct: 325 RVDGRKLDEVRPISSAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPGPE 384 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G + R+ G + RA+ V+ + + Sbjct: 385 KTYLH-HYNFPPYSVGETRPMRSPGRREVGHGS----LAERAIIPVLPPKDSFPYVLRVV 439 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 440 SEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEDAEI 486 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + +N A+ ++ Sbjct: 487 RILTDIQGIEDFLGDMDFKVAGTKDG-ITALQMDMKITGLPVKTIAEAVNQARPARIHIL 545 Query: 232 KLQKDVI 238 + + I Sbjct: 546 EKMLEAI 552 >gi|83855213|ref|ZP_00948743.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. NAS-14.1] gi|83843056|gb|EAP82223.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. NAS-14.1] Length = 711 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ +++R+I + GS L G+T L TL + Sbjct: 318 RIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ S I + + Sbjct: 378 NFMLHYNFPPYSVGEVGR----VGGPGRREIGHGKLAWRALQAVLPASTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGSYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AK ++ Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALAQAKAGRVHILG 539 Query: 233 LQKDVISN 240 IS Sbjct: 540 EMNKAISG 547 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L V++ A+GS + G+T ++ T + +T Y + Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 72 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 73 VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDST 184 A+ A AL +G + A G G +++ +D Sbjct: 128 MVAMIAASAALTISGA-------------PFRGPIGACRVGFEDGDYVLNPTVDDMQDLR 174 Query: 185 IDVD--ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ D + V+ + V + S E S++ + A ++I +I L Sbjct: 175 LNPDQRLDLVVAGTKEAVMMVES-EAYELSEEEMLGAVKFAHEQIQPVIDL 224 >gi|49473865|ref|YP_031907.1| polynucleotide phosphorylase/polyadenylase [Bartonella quintana str. Toulouse] gi|81647260|sp|Q6G0P7|PNP_BARQU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49239368|emb|CAF25701.1| Polyribonucleotide nucleotidyltransferase [Bartonella quintana str. Toulouse] Length = 733 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R I + GS L G+T + ATL ++ G Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ I + Sbjct: 377 TFLLHYNFPPFSVGETGR----LGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G AI + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLVRPIAGIAMGLIKEGERFAI---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ L A+D ++ Sbjct: 484 LGDEDHLGDMDFKVAGTNNG-ITALQMDIKIDGITEEIMKIALEQARDGRIHILNEMAKA 542 Query: 238 ISN 240 +++ Sbjct: 543 LTS 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 73/222 (32%), Gaps = 31/222 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ + +G+T +L T + + + G + Sbjct: 14 RPLTLETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEKFYAVGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G +KRE+ R I R+I R +R + Q+I+ VIQ D Sbjct: 74 P---GGYLKRES---RPTESETLISRLIDRPIRPLFADGYKNDTQVIVS--VIQYDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ + AL G +A G I++ E Sbjct: 126 PDILAMIASSAAL-------------TLSGVPFMGPIAGARVGYCNKQYILNPHIDEMPE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +D T+S ++ +E +D + Sbjct: 173 SKLDLVVAGTESAVLMV---ESEAQELPEDIMLGAVMFGHKG 211 >gi|325279004|ref|YP_004251546.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus DSM 20712] gi|324310813|gb|ADY31366.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus DSM 20712] Length = 758 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 83/237 (35%), Gaps = 18/237 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +RL GR Q+R I GS + G+T L++ TL K+ I + Sbjct: 316 VRLDGRTTEQIRPIWCEVGYLPGPHGSSIFTRGETQSLSSVTLGTKLDEKIIDEATIQGK 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG V R+ G + RAL+ ++ + + Sbjct: 376 ERFLLHYNFPPFSTGEAKASRGVGRREIGHG----NLALRALKRMIPEDF--PYTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A + +AL D M+ + + A + + D Sbjct: 430 DILESNGSSSMATVCAGTLALMDAGVPMKKPVTGIAMGLITDKGCAKYAV-------LSD 482 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + ED D+D T G I Q + S + L AK ++ + Sbjct: 483 ILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEIMEQALEQAKRGRMHIMDI 538 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 78/230 (33%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I+L K A+G+ ++K G+T LL T V + + A G Sbjct: 14 RVITLETGKLAKQADGAVMLKMGNTMLLATVVSAQDAGPDVDFMPLSVDYKEKFASVGRF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +RE G+ + R++ RALR + + + AD Sbjct: 74 P---GGFTRRE---GKSSDYEILVSRLVDRALRPLFPDDYHAET--FVQVTLYSAD---- 121 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ D L + + G ++ + + G +++ D Sbjct: 122 -------EESMPDALAGLAASAALAVSDIPFHGPISEVRVARIQGEFVINPTASALKEAD 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T +I+ V+G E S+ + A I + Q++ Sbjct: 175 LDIMVGATYE-NIMMVEG--EMNEVSEKEMLDAIKFAHAAIKEQCVAQQE 221 >gi|289207914|ref|YP_003459980.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp. K90mix] gi|288943545|gb|ADC71244.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp. K90mix] Length = 695 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R IS+ V GS + G+T L ATL + +V I + Sbjct: 314 RIDGRDNKTVRPISVQTSVLPRTHGSAVFTRGETQALVVATLGTDRDAQVIDAIEGERRD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + R+ G R+ R + +V+ + + + + Sbjct: 374 RFMLHYNFPPYCTGETGFVGSPKRREIGHG----RLAKRGVAAVMPKAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D LK VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PLKAPVAGIAMGLIKEGDRFAV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ L A++ ++ Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTNG-VTALQMDIKIDGITREIMEQALAQAREGRMHILGC 535 Query: 234 QKDVISNE 241 +V+ + Sbjct: 536 MNEVLPSH 543 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 59/187 (31%), Gaps = 24/187 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++ +++ A G+ LV +T +L TA E + + T G +P Sbjct: 14 VTFETGDIARQASGAVLVNMAETVVLVTAVARKEAEPGRDFFPLTVNYQERTYAAGKIP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + QI+ I D Sbjct: 73 --GGFFKRE---GRPNEKETLTSRLIDRPIRPLFPEGFKNETQIVATVMSINPDVDP--- 124 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 D + + G + A G G +++ Y D+D Sbjct: 125 ----------DIPALLGASAALALSGVPFAGPIGAARVGYRAGEYLLNPTYSALEDSDLD 174 Query: 189 ANFVMTD 195 T+ Sbjct: 175 LVVAGTE 181 >gi|190575258|ref|YP_001973103.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas maltophilia K279a] gi|226702693|sp|B2FN86|PNP_STRMK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|190013180|emb|CAQ46813.1| putative polyribonucleotide phosphorylase [Stenotrophomonas maltophilia K279a] Length = 702 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R I++ V GS L G+T + T TL + + G Sbjct: 315 VRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTARDGQVIDAVAGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115 Y P S G + R+ G R+ R + +V+ L A I + Sbjct: 375 ENFLFHYNFPPFSVGECGRMMGPKRREIGHG----RLAKRGVLAVMPSLEAFP-YTIRVV 429 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 430 SEITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERF 476 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I +Q + +++ L AK Sbjct: 477 VVLSDILGDEDHLGDMDFKVAGTAEG-ISALQMDIKIEGITEEIMKQALQQAKAG 530 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 31/230 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL TA + E + + G +P Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGGTR 126 G KRE GR + I R+I R +R + QII + DG Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNDVQIIATVMSLNPDVDG--- 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D + + G + A G G I++ E + Sbjct: 126 ------------DIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQ 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ T + ++ +E A S++ + + +I + Sbjct: 174 LELVVAGTSNAVLMV---ESEAALLSEEVMLGAVTFGHREMQKVINAINE 220 >gi|119628984|gb|EAX08579.1| exosome component 8, isoform CRA_a [Homo sapiens] Length = 316 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 26/257 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 64 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVP 122 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115 + P + SG G +Q + I + ++ L + + + Sbjct: 123 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 177 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 178 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 237 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + ++ A Sbjct: 238 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGIG--LTGAKLQDCMSRA 295 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 296 VTRHKEVKKLMDEVIKS 312 >gi|88860552|ref|ZP_01135190.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2] gi|88817750|gb|EAR27567.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2] Length = 709 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR+ + +R + + V GS + G+T L TATL + + T + Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQMLDALSGTSNS 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G + R +++V+ I + + Sbjct: 377 RFMLHYNFPPFCVGETGFVGSPKRREIGHG----NLAKRGIQAVMPSLTEFPYSIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL + +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGV-------------PVKASVAGIAMGLVKENENFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ LN AK ++ + Sbjct: 480 LSDILGDEDHLGDMDFKVAGTSNG-ITALQMDIKIEGITREIMQIALNQAKAARLHILGV 538 Query: 234 QKDVIS 239 IS Sbjct: 539 MDQAIS 544 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A+ + L GDT +L T + + + G +P Sbjct: 15 VTLETGAIARQADAAVLASIGDTSVLITVVGKKEAAPGQDFFPLTVNYQERMYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR I R+I R +R + + Q+I + Sbjct: 74 --GGFLKRE---GRPSDAETLIARLIDRPIRPLFPDGFVNEVQVIATVVSFNPEIQPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G V A G + G +++ E +D Sbjct: 129 TLIGTSAALAISGI-------------PFNGPVGASRVGYINGQYVLNPSVKELEESQLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T++ ++ +E S+D + +++ +I + Sbjct: 176 LVVAGTENAVLMV---ESEANILSEDVMLGAVMYGHEQMQSIITAVAE 220 >gi|325299313|ref|YP_004259230.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis DSM 18170] gi|324318866|gb|ADY36757.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis DSM 18170] Length = 729 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 94/250 (37%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ N++R I Y GS + G+T L+T TL +EKV + + Sbjct: 319 RLDGRKTNEIRPIWCEVSPLPYPHGSAIFTRGETQSLSTVTLGTKADEKVVDDVLDQHKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAG--YPYCVRVMSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGV-------------PIKNPVSGIAMGLIKNAGEDKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T +G I Q + + D L AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKNG-ITATQMDIKCDGLTYDILEKALLQAKEGREYIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 GKLTECIAEP 548 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 27/240 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60 GR I+L K A+G+ ++ G+T LL T ++ VP Sbjct: 12 PDGRT------ITLETGKLAKQADGAVTLRMGNTVLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ RALR + + + ++ + Sbjct: 66 EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V + D L + + G ++ + + G ++D + Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGKFVIDPTFE 169 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ L A + I K Q +++ Sbjct: 170 QLEQADMDLMVAATYE-NIMMVEG--EMDEVSEQDLLEALKAAHEAIKVHCKAQMELMEE 226 >gi|254521573|ref|ZP_05133628.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp. SKA14] gi|219719164|gb|EED37689.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp. SKA14] Length = 702 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R I++ V GS L G+T + T TL + + G Sbjct: 315 VRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTARDGQVIDAVAGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115 Y P S G + R+ G R+ R + +V+ L A I + Sbjct: 375 ENFLFHYNFPPFSVGECGRMMGPKRREIGHG----RLAKRGVLAVMPSLEAFP-YTIRVV 429 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 430 SEITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERF 476 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I +Q + +++ L AK Sbjct: 477 VVLSDILGDEDHLGDMDFKVAGTAEG-ISALQMDIKIEGITEEIMKQALQQAKAG 530 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 31/230 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL TA + E + + G +P Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGGTR 126 G KRE GR + I R+I R +R + QII + DG Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPDVDG--- 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D + + G + A G G I++ E + Sbjct: 126 ------------DIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQ 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ T + ++ +E A S++ + + +I + Sbjct: 174 LELVVAGTSNAVLMV---ESEAALLSEEVMLGAVTFGHREMQKVINAINE 220 >gi|15895084|ref|NP_348433.1| polynucleotide phosphorylase/polyadenylase [Clostridium acetobutylicum ATCC 824] gi|81530281|sp|Q97I45|PNP_CLOAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|15024781|gb|AAK79773.1|AE007689_11 Polyribonucleotide nucleotidyltransferase [Clostridium acetobutylicum ATCC 824] gi|325509222|gb|ADZ20858.1| polynucleotide phosphorylase/polyadenylase [Clostridium acetobutylicum EA 2018] Length = 703 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 93/241 (38%), Gaps = 20/241 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTKH 56 R GR+ +++R IS + GS L G T ++ T T + +V + + Sbjct: 312 RPDGRRFDEIRPISCDVDLLPRTHGSGLFTRGLTQVM-TVTTLGPIGDAQVIDGLGVEES 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + R+ G + +AL ++ I + Sbjct: 371 KRYMHHYNFPPYSTGEVKPLRGPNRREIGHG----ALAEKALVPLIPSEEEFPYTIRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ +AL D ++ + + + ++ + I D Sbjct: 427 EVLSSNGSTSQASVCGSTLALMDAGVPIKRPAAGIAMGLITSEDLSKEAV-------ITD 479 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + S+ +N A+ A L L+K Sbjct: 480 IQGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIHGLSKYCIKTAINDARK--ARLFILEKM 536 Query: 237 V 237 V Sbjct: 537 V 537 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 83/234 (35%), Gaps = 27/234 (11%) Query: 12 REISLTRRVSKYAEGSCL-VKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R++ + + + + +GDT ++ E + + + ++ G + Sbjct: 12 RKLKVECGKTGMLSNCAMFISYGDTVVMVNVNASEKPREGIDFFPLSIEYEERQYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G VKRE GR +S R I R LR + Q++ ++ D Sbjct: 72 P---GGFVKRE---GRPSEKSILHARAIDRPLRPLFPKGYRNDVQVVCTVMSVEQDNLPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +AL VA +S G + G +++ E Sbjct: 126 ILAMNGASMALC-------------LSDIPFTTPVATVSVGCIDGKFVLNPTLEEREKSS 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T+ ++ ++ A+ +D A ++ + D++ Q+ + Sbjct: 173 LDLTVCATNE-RVMMLEAGADEIP--EDLMIAAIDFGFNACQDIVAFQEKAMKE 223 >gi|332886043|gb|EGK06287.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas mossii DSM 22836] Length = 723 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 30/235 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 RL GR ++R I A GS + G+T LTT T L+EK+ + N Sbjct: 319 RLDGRTTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKLDEKIIDDVLNNGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG+ + V R+ G + RAL+ ++ I + D Sbjct: 379 RFLLHYNFPPFSTGDARPQRGVGRREIGHG----NLAHRALKPMIPSD--YPYVIRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 +++++G + A + +AL D +K V I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVTGIAMGLISEKKGTNF 479 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I Q + S + LN A++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVCGTKDG-ITATQMDIKVDGLSYEILEKALNQAREG 533 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A+GS +V+ G+T LL T V ++ A YG Sbjct: 15 RTITIETGKLAKQADGSVMVRMGNTMLLATVCAAKDANPGVDFMPLQVEYKEKFAAYGRF 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +RE GR + R++ RALR + ++ ++ + +DG Sbjct: 75 P---GGFQRRE---GRASDYEILVCRLVDRALRPLFPDD--YHAEVFVNVTLFSSDG--- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G ++ + + G I++ + + + D Sbjct: 124 --------EDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGQFILNPTFSQLAKAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D V +I+ V+G E S+ + A + I + Q + Sbjct: 176 MDI-MVGATIDNIMMVEG--EMKEVSEVEMLEAIKFAHEAIKVQCQAQIE 222 >gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis ATCC 13091] gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis ATCC 13091] Length = 706 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|187610328|sp|A1KT19|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria meningitidis alpha710] gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M6190] gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis ES14902] Length = 706 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|156311439|ref|XP_001617784.1| hypothetical protein NEMVEDRAFT_v1g47702 [Nematostella vectensis] gi|156195791|gb|EDO25684.1| predicted protein [Nematostella vectensis] Length = 443 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 20/244 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 RL GR+ ++R I GS + G+T L T TL E Sbjct: 215 RLDGRKTTEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLGTSREANQIDLPSEQGEE 274 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG S R+ G + RAL++++ + + + Sbjct: 275 TFYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKNMIPAD--CPYTVRVVSE 328 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++++G + A + +A+ D M + + + G+ A+ + D+ Sbjct: 329 VLESNGSSSMATVCSGTLAMMDAGIQMIKPVSGIAMGLITDGNNFAV---------LSDI 379 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + D L+ A++ ++ + Sbjct: 380 LGDEDHLGDMDFKVTGTADG-ITACQMDIKIDGLRYDIMEQALSQAREGRLHILGKLVET 438 Query: 238 ISNE 241 ++ Sbjct: 439 LAQP 442 >gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis FAM18] gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria meningitidis FAM18] Length = 711 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 321 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 381 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 437 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 487 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 488 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 546 Query: 238 ISNE 241 ++ Sbjct: 547 VAGP 550 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 21 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 79 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 80 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 134 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 135 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 181 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 182 LVVAGTSKAVLM 193 >gi|85542918|sp|Q5RCW2|PNPT1_PONAB RecName: Full=Polyribonucleotide nucleotidyltransferase 1, mitochondrial; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1; Flags: Precursor Length = 783 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R +S + K GS L + G T +L T T + ++V I Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + +AL V+ I Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+GS +V+ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE + + R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA VAL G V A+ G++ G +V+ E S+ Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|296125683|ref|YP_003632935.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii DSM 12563] gi|296017499|gb|ADG70736.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii DSM 12563] Length = 716 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 83/245 (33%), Gaps = 20/245 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 MR GR +++R IS + GS L G T L+ TL + + + +G Sbjct: 312 MRPDGRALDEIRPISTMINLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + R+ +V+ + + Sbjct: 372 KTFMLHYNFPPFSVGEVGR----YGAPGRREIGHGNLAERSFNAVLPSKEKFPYTVRVVA 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 ++++++G + A I + ++L + + GY I+ Sbjct: 428 EILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGL----------ATYKDGYKILT 477 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I Q + S L AK ++ + Sbjct: 478 DIQGVEDHLGDMDFKVAGTRKG-ITAFQLDIKLTGISAQILKEALEQAKKARYFILDIID 536 Query: 236 DVISN 240 ISN Sbjct: 537 STISN 541 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 27/227 (11%) Query: 16 LTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71 L + K A GS ++ G+T +L T + K P + +T Y + G Sbjct: 15 LETGLLAKQAHGSVTLRLGNTTILATV-VAAKEPN--LESDFFPLTVNYNEKYYAGGKIP 71 Query: 72 -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 KREA + + I R+I R LR + QII + D T Sbjct: 72 GGFFKREA---KPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPT----- 123 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 D L + + G VAA+ G G I++ E + ++D Sbjct: 124 --------DALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELPSSELDI- 174 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 V I+ ++G A+ S++ F + LA + I +Q ++ Sbjct: 175 IVAGSKDAILMIEGEAKE--VSEEVFIGAIELAHKEMQKYIDMQNEM 219 >gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M01-240013] gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M04-240196] Length = 706 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis N1568] Length = 706 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|83313216|ref|YP_423480.1| polynucleotide phosphorylase/polyadenylase [Magnetospirillum magneticum AMB-1] gi|123754041|sp|Q2VZQ4|PNP_MAGMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|82948057|dbj|BAE52921.1| Polyribonucleotide nucleotidyltransferase [Magnetospirillum magneticum AMB-1] Length = 720 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 18/230 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I + V A GS L G+T L ATL I + G Sbjct: 315 VRIDGRDTKTVRAIEVEVGVLPRAHGSALFTRGETQALVVATLGTGQDEQIIDQLAGEYR 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+R + + + Sbjct: 375 EHFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAMRPCLPAKESFPYTMRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A++ G+ +AL D + + + +G A+ + D Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPLPKPVAGIAMGLIKEGTDFAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED D+D T G + +Q + + +++ L AKD Sbjct: 482 ILGDEDHLGDMDFKVAGTVDG-VTALQMDIKITSITEEIMKIALGQAKDG 530 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 87/238 (36%), Gaps = 42/238 (17%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ L V++ A+G+ +V +G+T +L T +T Y + Sbjct: 16 RKLVLETGKVARQADGAVMVTYGETSVLCTVVG---AKSQKPGIDFFPLTVNYQEKAFAA 72 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 G KRE GR + + R+I R +R + Q++ C V+ D Sbjct: 73 GKIPGGFFKRE---GRPSEKETLVSRLIDRPIRPLFADGFRNEVQVV--CTVLSHDLEND 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AA+ G AL G V A G + G +++ G+ Sbjct: 128 PDIAALVGTSAAL-------------TISGLPFMGPVGAARVGYVDGAYVLNPLVGDLPK 174 Query: 185 IDVDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAM----LNLAKDRIAD 229 ++D T G ++ V+ A++ + F F A+ ++LA++ D Sbjct: 175 SELDLVVAGTVEG-VLMVESEAKQLSEDVMLGAVMFGHREFQAVIQAIIDLAEECAKD 231 >gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis M01-240355] Length = 706 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|194220716|ref|XP_001496138.2| PREDICTED: similar to Polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor (PNPase 1) (Polynucleotide phosphorylase-like protein) (PNPase old-35) (3-5 RNA exonuclease OLD35) [Equus caballus] Length = 784 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R I+ + K GS L + G T +L T T + +++ I Sbjct: 358 RCDGRDLTSLRNINCEVDMFKILHGSALFQRGQTQVLCTVTFDSLESSIKSDRIITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 Y P +T K V+ R+ G + +AL V+ I Sbjct: 418 VNDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAEKALYPVIPKDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISTAVAGVAIGLVTKNNP---DKGEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 25/202 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ ++ ++A+GS +V+ GDT ++ TA + K ++ + +Y + Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSP----SQFLPLVVDYRQKAAAA 109 Query: 71 GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 G R+ + G +EI R+I R++R + Q++ C+++ DG Sbjct: 110 G-RIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEPD 166 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA VAL G V A+ GM+ G +V+ E S+ Sbjct: 167 VLAINGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSST 213 Query: 187 VDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 214 LNLVVAGAPKSQIVMLEASAEN 235 >gi|114577443|ref|XP_515490.2| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial [Pan troglodytes] Length = 783 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R +S + K GS L + G T +L T T + ++V I Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + +AL V+ I Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+GS +V+ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE + + R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA VAL G V A+ G++ G +V+ E S+ Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|332827644|gb|EGK00386.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas gadei ATCC BAA-286] Length = 720 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 30/235 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 RL GR ++R I A GS + G+T LTT T L+EK+ + N Sbjct: 318 RLDGRSTTEIRPIWSEVDYLPGAHGSAIFTRGETQSLTTVTLGTKLDEKIIDDVLNNGKE 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG+ + V R+ G + RAL+ ++ + I + D Sbjct: 378 RFLLHYNFPPFSTGDARPQRGVGRREIGHG----NLAHRALKPMIPAN--YPYVIRVVSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 +++++G + A + +AL D +K V I+ G++ Sbjct: 432 ILESNGSSSMATVCAGTLALMDAGVQ-------------IKKPVTGIAMGLISEKKGTNF 478 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I Q + S + LN A++ Sbjct: 479 AVLSDILGDEDHLGDMDFKVCGTKDG-ITATQMDIKVDGLSYEILEKALNQAREG 532 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I+L K A+GS +++ G+T +L T + V ++ A +G Sbjct: 14 RTITLETGKLAKQADGSVMLRMGNTMMLATVCAAKDAKPDVDFMPLQVEYKEKFAAFGRF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR + R++ RALR + ++ ++ + +DG Sbjct: 74 P---GGFLRRE---GRASDYEILVCRLVDRALRPLFPDD--YHAEVFVNVTLFSSDG--- 122 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + + D L + + G ++ + + G I++ + + D Sbjct: 123 --------IDMPDALAGLAASAALAVSDVPFNGPISEVRVARVDGQFILNPTFAQVEQAD 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D V +I+ V+G E S+ + +A + I + Q + Sbjct: 175 MDI-MVGATIDNIMMVEG--EFKEVSEAEMLEAIKVAHEAIKIQCQAQIE 221 >gi|330877224|gb|EGH11373.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 630 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 245 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 304 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R++++++ + + I + + Sbjct: 305 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 360 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G AI + D+ Sbjct: 361 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 411 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G + +Q + +++ L A + Sbjct: 412 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 459 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 20/167 (11%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + + Q++ AA+ Sbjct: 4 GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAM 60 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDA 189 G AL G V A +++ Y + +D Sbjct: 61 IGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDM 107 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T ++ +E ++D + A D +I K+ Sbjct: 108 VVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 151 >gi|310641602|ref|YP_003946360.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa SC2] gi|309246552|gb|ADO56119.1| Polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa SC2] Length = 700 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R I + GS L G T L T A + ++ I + Sbjct: 313 VRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RAL V+ I + Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPSETEFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA ++ G++ Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGDHVS 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + ++ L A++ ++ Sbjct: 476 VLTDIQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKIDGIDRNILQDALKQAREGRLFILG 534 Query: 233 LQKDVISNE 241 + I Sbjct: 535 KMMEAIQKP 543 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 28/227 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ L ++K A + V +G+T +L T T + ++ +T Y + Sbjct: 12 RKLVLETGRLAKQANAAVKVSYGETVVLCTVTASRE----PKDLDFFPLTVNYEERLYAV 67 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR ++ R+ R +R + Q++ + D Sbjct: 68 GKIPGGFIKRE---GRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G AL G + ++ G + G +++ D + +T D Sbjct: 125 IAAMIGTSAALS-------------ISDVPFNGPIGGVAVGRVNGQFVINPDIAQQNTSD 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + T I+ V+ AE ++ + D I +++ + Sbjct: 172 LYLVVAGTKDA-IMMVE--AEGDEIPEEVMLEAIMFGHDEIKNIVAV 215 >gi|291287262|ref|YP_003504078.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio acetiphilus DSM 12809] gi|290884422|gb|ADD68122.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio acetiphilus DSM 12809] Length = 711 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 85/234 (36%), Gaps = 27/234 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 R+ GR +R+I + R+ A GS L G+T L ATL K I Sbjct: 320 RIDGRSYTDIRDIDIETRLLPMAHGSGLFTRGETQALVVATLGTKTDTQILDTIYGDGKK 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + G G R + R+L V+ + I I + Sbjct: 380 RFMLHYNFPPFCVGE---VGFLRG-PGRREIGHGALAERSLAQVLPDADDFPYTIRIVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----Y 172 V++++G + A + G +AL D +K VA ++ G++ Sbjct: 436 VLESNGSSSMATVCGGCLALMDAGV-------------PIKSPVAGVAMGLIYEGADRFA 482 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I +Q + SQ+ L AK+ Sbjct: 483 VLSDILGTEDHLGDMDFKVTGTKDG-ITALQMDIKIEGLSQELLETALGQAKEA 535 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 80/231 (34%), Gaps = 31/231 (13%) Query: 16 LTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRST 70 +K A GS +K G T +L TA + E + + G +P Sbjct: 21 FETGWKAKQANGSIWMKQGGTVVLVTAAGKKTASENQGFFPLTVNYIEKFYAAGKIP--- 77 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128 G KREA + R+I R LR + Q+I V+ DG Sbjct: 78 GGFFKREA---KPTDNETLTSRLIDRPLRPMFPDGFRNETQVIA--HVVSYDGVNSPDML 132 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G +A + G L G I++ D ++D Sbjct: 133 AMNGASAAL-------------MISDIPFNGPIAGVRVGRLDGKLIINPPA--DRLEELD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 N ++ + + + + + S+ L D I L+ Q ++++ Sbjct: 178 MNIILAGTDDAIVMVEAGM-SVVSEAEVIEALQFGHDNIKKLVAKQNEMVA 227 >gi|168698769|ref|ZP_02731046.1| polynucleotide phosphorylase/polyadenylase [Gemmata obscuriglobus UQM 2246] Length = 749 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR ++R + V G+ L + G+T L ATL E+KV +++ Sbjct: 317 RIDGRAPKELRALGAEVTVLPRTHGTALFQRGETQALVVATLGTVADEQKVDG-LQDEYS 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G A R+ G + R+L++V+ + I + Sbjct: 376 KKFFLDYNFPPYSVGECKPIRAPGRREIGHGM----LAERSLKAVIPPPSRFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A++ G +AL D +K VA IS G++ Sbjct: 432 EILESNGSSSMASVCGGTLALMDAGV-------------PIKRPVAGISVGLVMEKDHFS 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + VQ + ++ L AK+ ++K Sbjct: 479 LLTDIQGDEDHYGDMDFKVAGTQKG-VTGVQLDIKVDGINEAIVRGALEQAKEARLQILK 537 Query: 233 LQKDVIS 239 +S Sbjct: 538 TMLSALS 544 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 77/228 (33%), Gaps = 30/228 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R + L +K A G+ LV +G+T +L A +P + ++ T G P Sbjct: 15 RTLVLETGKFAKQAHGAVLVTYGETSVLVAAVEGSPIPGRDFFPLQVEYRERTYAAGKFP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G +KRE R + R+I R R + + QI C VI +D Sbjct: 75 ---GGFIKRET---RPSTKETLTSRLIDRPSRPLFPANYFNEVQIH--CTVISSDRENDA 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A+ G ALH + G + G +V + Sbjct: 127 DMLALIGTSAALH-------------VSHIPFLKPYGGLRLGRVNGELVVLPTVTQMEES 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D+D T + ++G A ++ + A + A LI L Sbjct: 174 DLDLIVAATRDA-VCMIEGFARE--MPENEMGDAIMEAHKQCAVLIDL 218 >gi|16124290|ref|NP_418854.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus CB15] gi|221232972|ref|YP_002515408.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus NA1000] gi|81536356|sp|Q9AC32|PNP_CAUCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782712|sp|B8GWZ0|PNP_CAUCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|13421126|gb|AAK22022.1| polyribonucleotide nucleotidyltransferase [Caulobacter crescentus CB15] gi|220962144|gb|ACL93500.1| polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase [Caulobacter crescentus NA1000] Length = 712 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 20/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR +R I + GS L G+T + ATL + G Sbjct: 316 LRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RALR ++ I + Sbjct: 376 ESFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRALRPMLPTKEDFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 ++ +++G + A + G+ +A+ D + + + +L+ G+ ++ Sbjct: 432 EITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQ----------DGFAVLS 481 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G + +Q + A + L AK+ A ++ Sbjct: 482 DILGDEDHLGDMDFKVAGTSEG-LTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMN 540 Query: 236 DVI 238 + Sbjct: 541 KAM 543 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 40/233 (17%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71 L +++ A+G+ L G+T +L TA +T Y + G Sbjct: 18 LETGRIARQADGAVLATMGETVVLATAVF---AKSQKPGQDFFPLTVNYQEKTFAAGKIP 74 Query: 72 -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128 KRE GR + + R+I R +R + Q+++ V+Q D Sbjct: 75 GGFFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVT--VLQHDLENDPDIL 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + A AL G + A G + G +++ E +D Sbjct: 130 GMVAASAALCLSGA-------------PFMGPIGAARVGWVDGAYVLNPTLDEMKESKMD 176 Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAM----LNLAKDRIAD 229 T ++ E+Q +E F+ A+ ++LA+ + Sbjct: 177 LVVAGTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKE 229 >gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis CU385] Length = 706 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541 Query: 238 ISNE 241 ++ Sbjct: 542 VAGP 545 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 16 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 177 LVVAGTSKAVLM 188 >gi|33866429|ref|NP_897988.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH 8102] gi|81574045|sp|Q7U515|PNP_SYNPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33633207|emb|CAE08412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH 8102] Length = 721 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 34/237 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 REI LT + A GS LV+ GDT +L TAT E + + G +P Sbjct: 13 REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123 S R GR R+ R+I R +R + Q++ C + AD Sbjct: 73 GSYQRR------EGRPPERATLTARLIDRPMRPLFPAWLRDDLQVVATCLSLDERVPAD- 125 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 A+TGA +A G +AA+ G+L +++ Y E Sbjct: 126 ---VLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREIE 169 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ + + ++ + I +LIK Q+ ++ + Sbjct: 170 RGDLDLIVAGTPDG-VVMVEAGGNQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 93/247 (37%), Gaps = 29/247 (11%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TK 55 R+ GR +++R IS V + GS L + G T +L+TATL + T+ Sbjct: 323 RVDGRALDEVRAISALAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPSTE 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y P S G + R+ G + RA+ V+ + + Sbjct: 383 KLYLH-HYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPAKDTFPYVVRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ ++L D LK V+ + G++ Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGV-------------PLKAPVSGAAMGLIKEGDDI 484 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D ++ G I +Q + +N A+ ++ Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLPVKTIAEAINQARPARLHIL 543 Query: 232 KLQKDVI 238 + + I Sbjct: 544 EKMLEAI 550 >gi|149730159|ref|XP_001495596.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal RNA-processing protein 43) (Exosome component 8) (p9) (Opa-interacting protein 2) [Equus caballus] Length = 276 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPP-TDAPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + SG G +Q + I + ++ L G ++ Sbjct: 82 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTISEETALAEVNLKKKSFLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +V+ + Sbjct: 256 VTRHKEVKKLMDEVVKS 272 >gi|226356846|ref|YP_002786586.1| polynucleotide phosphorylase/polyadenylase [Deinococcus deserti VCD115] gi|257096684|sp|C1CXB5|PNP_DEIDV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226318836|gb|ACO46832.1| putative polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) [Deinococcus deserti VCD115] Length = 721 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R GR +R I + R A GS + G+T +L ATL + + + + Sbjct: 318 LRADGRNGRAVRPIWIEARPLPRAHGSAIFTRGETQVLGVATLGTERDEILVDDLTTEDN 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + S R+ G + RA+R+V+ I + Sbjct: 378 DKFMLHYNFPPYSTGEVKRMGGQSRREIGHGH----LAKRAIRAVLPSFEEFPYVIRLVG 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A + +AL D +K VA ++ G++ Sbjct: 434 EVLESNGSSSMATVCAGVLALMDAGV-------------PIKAPVAGVAMGLVMEGDKYR 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + + L A++ ++ Sbjct: 481 VLTDILGLEDALGDMDFKVCGTAEG-VTALQMDIKVGGITPQVMREALAQAREGRLHILG 539 Query: 233 LQKDVISNE 241 +V+S+ Sbjct: 540 KMAEVLSSP 548 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 86/238 (36%), Gaps = 31/238 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 RE+S+ ++K GS +++GDT LL TA E+ +T E+ + Sbjct: 13 RELSIETGRLAKLVSGSVTLRYGDTMLLVTAQAREEKSPLDFLP----LTVEFEERHYAV 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + +RE GR G ++ R+ R LR + Q+II Sbjct: 69 GKIPGSFHRRE---GRPGEKAILSARITDRQLRPLFPKGYRHETQVIITVLSADQQNAPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 GA AL G A + G + G IV+ + + Sbjct: 126 VLGPIGASAALS-------------ISDIPWGGPTACVRVGQVDGQFIVNPTADQLTRSR 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA---KDRIADLIKLQKDVISNE 241 +D T ++ V+ A+ T S++ + + A + DLI+ + + E Sbjct: 173 MDLVVAGTRDA-VMMVEAGAQ--TVSEEDLVSAIEFAHAEMQGVIDLIERMRAEVGQE 227 >gi|153806044|ref|ZP_01958712.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185] gi|149130721|gb|EDM21927.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185] Length = 708 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 RL GR+ ++R I GS + G+T LT+ T L+EK+ + Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDNVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + + Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEDKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + LN AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 DKIAETIAEP 548 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57 GR I+L K A+GS +++ G+T LL T ++ VP ++ Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A +G P G KRE GR R++ RALR + + ++ ++ Sbjct: 66 EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ADG V + D L + + G ++ + + G +++ Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + D+D T +I+ V+G E S+ + +A + I K Q + Sbjct: 167 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKVHCKAQME- 222 Query: 238 ISNEV 242 ++ EV Sbjct: 223 LTEEV 227 >gi|119470827|ref|ZP_01613438.1| polynucleotide phosphorylase, has polyadenylase activity; part of the degradosome [Alteromonadales bacterium TW-7] gi|119446054|gb|EAW27333.1| polynucleotide phosphorylase, has polyadenylase activity; part of the degradosome [Alteromonadales bacterium TW-7] Length = 708 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R + + V GS + G+T L TATL + + T Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G + R +++V+ I + + Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHG----NLAKRGIQAVMPTLTDFPYSIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL + +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGV-------------PIKASVAGIAMGLVKEDEKFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +Q+ L AK ++++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIEGITQEIMQIALKQAKAARLHILEV 538 Query: 234 QKDVIS 239 + IS Sbjct: 539 MDEAIS 544 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLPR 68 ++L +++ A+G+ L GDT +L T + + +T Y R Sbjct: 15 VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQP---GQDFFPLTVNYQERMYAAGR 71 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR I R+I R +R + + Q+I + + Sbjct: 72 IPGGFLKRE---GRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEIQPDMV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G + G +++ E +D Sbjct: 129 AMIGTSAALAISGI-------------PFSGPIGAARVGYIGGEYVLNPTLKELEESQLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E ++D + ++ +I + Sbjct: 176 LVVAGTDNAVLMV---ESEADVLAEDVMLGAVVYGHEQSQSIINAINE 220 >gi|293374237|ref|ZP_06620565.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis PC909] gi|325845651|ref|ZP_08168935.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1] gi|292647070|gb|EFF65052.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis PC909] gi|325488349|gb|EGC90774.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1] Length = 701 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 26/239 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L T A E ++ + + Sbjct: 314 VRPDGRKIDEIRPLSSRVDLLPRTHGSALFTRGQTQALSVCTLGALNEHQMLDGLEVEET 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + RAL+ V+ + + Sbjct: 374 KRFMHHYNFPPFSVGETGR----YGAPGRREIGHGALGERALKQVMPSEKDFPYTVRLVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +AL +K VA I+ G++ Sbjct: 430 EVLESNGSTSQASICASTMALMAAGV-------------PIKAPVAGIAMGLVKKGENYT 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + +Q + ++ L AK ++ Sbjct: 477 VLTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIEGLNRQILEEALQQAKVGRMQIL 534 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R +S ++K A S LV++GDT +L A+ E K + + + G +P Sbjct: 14 RPLSFEIGELAKQANASVLVRYGDTVVLSTCVASKEPKDIDFFPLTIGYEERLYAVGKVP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+I + D Sbjct: 74 ---GGFIKRE---GRPSEHAVLSGRLIDRPIRPLFPDGFRNDVQVINYVMSVDHDNSPAI 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G + +G +A + G + G I++ E D+ Sbjct: 128 AAMIG-------------SSLSLSISDIPFEGPIAGVVVGRVDGKFIINPTVEELEKSDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T I V+ A+ ++ + + I ++ Q+ +++ Sbjct: 175 DLTVAGTKDA-INMVEAGAKEVP--EEDMLEAIMFGHEMIKQIVAFQEQIVAE 224 >gi|257468232|ref|ZP_05632328.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium ulcerans ATCC 49185] gi|317062514|ref|ZP_07926999.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313688190|gb|EFS25025.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 699 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+ ++R + V GS + G+T + TL K + + Sbjct: 324 RVDGRKTTEIRPLFAEVGVLPIPHGSAMFTRGETQAVVVTTLGTKEDEQLVDDLEKEYFK 383 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RAL V+ I + + Sbjct: 384 KFYLHYNFPPYSVGETGRMGSPGRRELGHGS----LAERALSYVIPSEESFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L A D +++ + Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITEEIMRIALKQALDARNEILVV 545 Query: 234 QKDVIS 239 + IS Sbjct: 546 MNNAIS 551 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 29/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +S + +++ + G+ +V++G+T LL+T + + + G Sbjct: 14 RTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + I+ Sbjct: 74 P---GGFNKRE---GRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSYDEKNTPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I G+ +AL G VA + G G I++ E T D Sbjct: 128 YLGIIGSSMAL-------------MLSDLPFLGPVAGVVVGYKDGEFILNPTPEELETSD 174 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ + + ++VE A ++ A + A + I + Q++ Sbjct: 175 LELSVAGSKDAVNMVE----AGAKELDEETMLAAIMFAHENIKKICAFQEE 221 >gi|256827187|ref|YP_003151146.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Cryptobacterium curtum DSM 15641] gi|256583330|gb|ACU94464.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Cryptobacterium curtum DSM 15641] Length = 742 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57 R+ GR +++R + + GS L + G T L T + I ++ Sbjct: 315 RVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGTLREGQRLDTIDPSEGK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y P TG + A R+ G + RAL V+ I + + Sbjct: 375 RYMHQYNFPPYCTGEVGRIGAPKRREIGHG----ALAERALIPVLPSEDDFPYAIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 +++++G + A+ G+ +AL D + V+ I+ G++ I Sbjct: 431 ILESNGSSSMASTCGSTLALMDAGV-------------PITAPVSGIAMGLIKEGDETVI 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + S + L AK+ A ++ Sbjct: 478 LSDIQGLEDFLGDMDFKVTGTARG-ITALQMDNKARGLSTEILGRALAQAKEGRAFILSA 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MLEQISEP 544 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 78/230 (33%), Gaps = 28/230 (12%) Query: 15 SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70 L ++K A G+ LV G+T L TA + E+ + G +P Sbjct: 16 RLETGELAKQATGAVLVTQGETTCLVTAVVSKEEKDYDFFPLTVDFMEKMYAVGRIP--- 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G +KRE G+ + RMI R +R I+ V ADG Sbjct: 73 GGYLKRE---GKASDKGTLTARMIDRPIRPGFPDGFKQEVHIVATTFV--ADGQN----- 122 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVD 188 DC+ + G A + + G IV+ Y E D++ Sbjct: 123 ------PPDCICVGGASAALLAGGAPFDGPAACVRIARNVETGEFIVNPTYAEQEESDLE 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T +I V+ A S++ A +N ++ IA Q+ + Sbjct: 177 LTIAGTAD-YISMVEAGANE--VSEEDMLAAMNFGQEAIAAFCDAQQRFL 223 >gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis MC58] gi|81784821|sp|Q9K062|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis MC58] Length = 707 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +++ V GS L G+T L ATL +E++ + Sbjct: 317 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542 Query: 238 ISNE 241 ++ Sbjct: 543 VAGP 546 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + V GDT +L T ++E + + T G +P Sbjct: 17 VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 76 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E + +D Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177 Query: 189 ANFVMTDSGHIV 200 T ++ Sbjct: 178 LVVAGTSKAVLM 189 >gi|253573573|ref|ZP_04850916.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral taxon 786 str. D14] gi|251847101|gb|EES75106.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral taxon 786 str. D14] Length = 702 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 86/234 (36%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R I + GS L G T L T A + ++ I + Sbjct: 313 VRPDGRKLDEIRPIECDISLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGIDLEES 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RAL V+ + I + Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPPESEFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172 +V++++G T A+I + +A+ D +K VA ++ G++ G Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGEHVS 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + + L A++ Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKIDGIDRQILSDALKQAREG 528 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 26/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R + L ++K A + +V++GDT +L T T + + + + G +P Sbjct: 12 RPLILETGRLAKQANAAVMVRYGDTAVLCTVTASSEPKDLDFFPLTVNYEEKLYAVGKIP 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+ R +R + QI+ + D Sbjct: 72 ---GGFIKRE---GRPSEKAILASRLTDRPIRPLFPEGFRNDVQIVNLVMSVDQDCEPEI 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A++ G AL G + ++ G + G +++ D + D+ Sbjct: 126 ASMIGTSAALS-------------ISDVPFNGPIGGVAVGRVNGEFVINPDVAQQEASDI 172 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 T I+ V+ AE ++ + + I ++ + Sbjct: 173 YVVVAGTKDA-IMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAV 215 >gi|182889712|gb|AAI65543.1| Exosc8 protein [Danio rerio] Length = 277 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 88/254 (34%), Gaps = 25/254 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R +L A+GS LVK G+T ++ E VP G++ Sbjct: 23 RPDGRELGKFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEA-QNKGYLVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQI----IID 115 + P + +G G ++Q + I + S +++L L + ++ Sbjct: 82 NVDLPPLCSS-----RFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163 CD+ + DG A IT AL E K + ++ + V + Sbjct: 137 CDIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGS 196 Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 IVD E+S V + + V + S + +N A Sbjct: 197 SFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRA 255 Query: 224 KDRIADLIKLQKDV 237 R ++ KL V Sbjct: 256 ITRNKEIRKLLDKV 269 >gi|188991049|ref|YP_001903059.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. campestris str. B100] gi|167732809|emb|CAP51003.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris pv. campestris] Length = 735 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS+ V GS L G+T + TL + + G Sbjct: 346 VRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK 405 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 406 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 461 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 462 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEDDRFV 508 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 509 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 567 Query: 233 LQKDVISNE 241 ++ Sbjct: 568 EMSKALTTP 576 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL TA T E + + G +P Sbjct: 46 VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 104 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 105 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 159 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G G I++ E ++ Sbjct: 160 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTITELKDSQLE 206 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + ++ +E A S++ + + +I + + Sbjct: 207 LVVAGTANAVLMV---ESEAALLSEEVMLGAVTFGHREMQKVINIINE 251 >gi|152995062|ref|YP_001339897.1| polynucleotide phosphorylase/polyadenylase [Marinomonas sp. MWYL1] gi|189037308|sp|A6VU33|PNP_MARMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|150835986|gb|ABR69962.1| Polyribonucleotide nucleotidyltransferase [Marinomonas sp. MWYL1] Length = 702 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ + GS L G+T + T TL + + G Sbjct: 315 RIDGRDNKTVRPINVEVGLLSKTHGSALFTRGETQAIATCTLGTSRDSQMTDGLTGESKD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R R+ R +++V+ I + + Sbjct: 375 SFMLHYNFPPYSVGECGR----MGGVGRREIGHGRLARRGVQAVLPSEDEFPYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +++ D LK VA I+ G++ G+ + Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGV-------------PLKAPVAGIAMGLIKEDDGFAV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L+ A + +++ Sbjct: 478 LTDILGDEDHLGDMDFKVAGTAEG-ITALQMDIKIEGINEEIMDIALSQALEARTHILRE 536 Query: 234 QKDVIS 239 VI Sbjct: 537 MAKVIG 542 Score = 68.6 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 28/218 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ L GD +L T + + + + G +P Sbjct: 15 VTLETGRIARQATGAVLCTIGDAQVLATVVGAKSAKAGQDFFPLSVHYQERAYAVGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+I R +R + + Q++ + A Sbjct: 74 --GGFLKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTNLDADIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187 A+ AL G + A G +++ Y + + Sbjct: 129 AMLATSAALTISGI-------------PFNGPIGAARVGFNDESGYVLNPSYSDLDGSLL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 D T ++ +E ++D + A Sbjct: 176 DMVVAGTKDAVLMV---ESEAQELTEDEMLGAVLYAHK 210 >gi|24943088|gb|AAK13047.1| 3'-5' RNA exonuclease [Homo sapiens] Length = 783 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R +S + K GS L + G T +L T T + ++V I Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + +AL V+ I Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+GS +V+ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE + + R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREVGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA VAL G V A+ G++ G +V+ E S+ Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|20372922|emb|CAD30289.1| polynucleotide phosphorylase-like protein [Homo sapiens] gi|31657166|gb|AAH53660.1| Polyribonucleotide nucleotidyltransferase 1 [Homo sapiens] Length = 783 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R +S + K GS L + G T +L T T + ++V I Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + +AL V+ I Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+GS +V+ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE + + R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREVGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA VAL G V A+ G++ G +V+ E S+ Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|319787423|ref|YP_004146898.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas suwonensis 11-1] gi|317465935|gb|ADV27667.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas suwonensis 11-1] Length = 701 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS+ V GS + G+T + TL I + G Sbjct: 315 VRIDGRALDTVRPISVKTGVLPRTHGSAMFTRGETQAIVVTTLGTTRDGQIIDAVSGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ + + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSIEEFPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEDDRFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTADG-VSALQMDIKIEGITEEIMKQALEQAKAGRLHILG 536 Query: 233 LQKDVI 238 + Sbjct: 537 EMAKAL 542 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 84/234 (35%), Gaps = 31/234 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A GS +VK DT LL TA + E + + G +P Sbjct: 15 VTLETGEVARQASGSVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGGTR 126 G KRE GR + I R+I R +R + QII + + DG Sbjct: 74 --GGFFKRE---GRPTEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPEIDGDI- 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL KG + A G G I++ E + Sbjct: 128 -PALIGASAALSLAGT-------------PFKGPIGAAKVGYKDGQYILNPSASE--LAE 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 V+ + + V + S E A S++ + + +I ++++ Sbjct: 172 SKLELVVAGTANAVLMVES-EAALLSEEVMLGAVTFGHREMQKVINAINELVAE 224 >gi|260574490|ref|ZP_05842494.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2] gi|259023386|gb|EEW26678.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2] Length = 711 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I+ + GS L G+T L TL I + HG + Sbjct: 318 RIDGRDNKTVRPITSETGILPRTHGSALFTRGETQGLVITTLGTGEDEQIIDALHGNSRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPPATEFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGRFA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + L AKD ++ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPAIMEQALAQAKDGRLHILG 539 Query: 233 LQKDVISNE 241 ++ Sbjct: 540 EMSKALTGP 548 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 35/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKTAKPGQDFFPLTVHYQERYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ V+ D Sbjct: 75 --GGFFKREA---RPSEKETLTSRLIDRPIRPLFVDGF--KNEVLLIVTVLSHDLVNEPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS--- 183 A+ A AL G + A G G +++ D ED Sbjct: 128 ILAMIAASAAL-------------TISGVPFMGPIGAARVGFSKGAYVLNPD-VEDMQKL 173 Query: 184 --TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E S+D + + + +I L Sbjct: 174 RENPEQRLDLVIAGTKDAVMMVES-EAYELSEDEMLGAVKFGHEAMQPVIDL 224 >gi|188528628|ref|NP_149100.2| polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor [Homo sapiens] gi|115502437|sp|Q8TCS8|PNPT1_HUMAN RecName: Full=Polyribonucleotide nucleotidyltransferase 1, mitochondrial; AltName: Full=3'-5' RNA exonuclease OLD35; AltName: Full=PNPase old-35; AltName: Full=Polynucleotide phosphorylase 1; Short=PNPase 1; AltName: Full=Polynucleotide phosphorylase-like protein; Flags: Precursor gi|62988884|gb|AAY24271.1| unknown [Homo sapiens] gi|119620492|gb|EAX00087.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Homo sapiens] Length = 783 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R +S + K GS L + G T +L T T + ++V I Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + +AL V+ I Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+GS +V+ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE + + R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA VAL G V A+ G++ G +V+ E S+ Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|315126162|ref|YP_004068165.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp. SM9913] gi|315014676|gb|ADT68014.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp. SM9913] Length = 708 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R + + V GS + G+T L TATL + + T Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G + R +++V+ I + + Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHG----NLAKRGIQAVMPTLTEFPYSIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G +AL + +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGV-------------PIKASVAGIAMGLVKEEENFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +Q+ L AK ++ + Sbjct: 480 LSDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIEGITQEIMQIALKQAKAARLHILGV 538 Query: 234 QKDVIS 239 + IS Sbjct: 539 MDEAIS 544 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLPR 68 ++L +++ A+G+ L GDT +L T + + +T Y R Sbjct: 15 VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQP---GQDFFPLTVNYQERMYAAGR 71 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR I R+I R +R + + Q+I + + Sbjct: 72 IPGGFLKRE---GRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEIQPDMV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G + G +++ E +D Sbjct: 129 AMIGTSAALAISGI-------------PFSGPIGASRVGYINGEYVLNPTLKELEESQLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E ++D + ++ +IK + Sbjct: 176 LVVAGTDNAVLMV---ESEADVLAEDVMLGAVVYGHEQSQSIIKAINE 220 >gi|56707819|ref|YP_169715.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670290|ref|YP_666847.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. tularensis FSC198] gi|224456890|ref|ZP_03665363.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370315|ref|ZP_04986320.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874633|ref|ZP_05247343.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|81597693|sp|Q5NGX7|PNP_FRATT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123169466|sp|Q14IC9|PNP_FRAT1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56604311|emb|CAG45332.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320623|emb|CAL08715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|151568558|gb|EDN34212.1| hypothetical protein FTBG_00070 [Francisella tularensis subsp. tularensis FSC033] gi|254840632|gb|EET19068.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158995|gb|ADA78386.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. tularensis NE061598] Length = 693 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I++ V GS L G+T L TL + + G Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376 Query: 62 E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + + Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARAGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIKEH 547 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D VA + G G I++ + + D+D Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 TD I+ V+ +E + + + A + +I Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|218259530|ref|ZP_03475243.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii DSM 18315] gi|218225061|gb|EEC97711.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii DSM 18315] Length = 743 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 24/245 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 RL GR+ ++R I + GS + G+T L+T TL K + N Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKADEKMIDDVLNHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL+ ++ + + D Sbjct: 379 RFLLHYNFPPFSTGEAKASRGVGRREIGHG----NLAHRALKRMIPTD--YPYVVRVISD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 +++++G + A + +AL D M+ + + IS Y I+ D Sbjct: 433 ILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMG--------LISENKGQNYAILSD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232 + ED D+D T G I Q + S + L AK+ + +++ Sbjct: 485 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKIME 543 Query: 233 LQKDV 237 Q +V Sbjct: 544 AQPEV 548 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A+G+ V+ G+T LL T V ++ + +G Sbjct: 15 RTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPLQVEYKEKFSAFGRF 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G+ R++ RALR + + ++ ++ + ADG Sbjct: 75 P---GGFTKRE---GKASDYEILTSRLVDRALRPLFPDN--YHAEVYVNVILFSADG--- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G ++ + G +V+ + E D Sbjct: 124 --------EDMPDALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEKAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D V +I+ V+G E + + +A + I + Q + Sbjct: 176 IDI-MVGATLDNIMMVEG--EMDEVQESEMLEAIKVAHEAIKIQCQAQLE 222 >gi|162452817|ref|YP_001615184.1| polynucleotide phosphorylase/polyadenylase [Sorangium cellulosum 'So ce 56'] gi|187611292|sp|A9F8Z2|PNP_SORC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|161163399|emb|CAN94704.1| polynucleotide phosphorylase [Sorangium cellulosum 'So ce 56'] Length = 757 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + GS L + G+T + T TL + G Sbjct: 316 RIDGRDGRSIRPIMCEVGLLPRVHGSALFQRGETQAIVTTTLGTSTDEQKIDGLMGETWK 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG R+ G + RAL ++ I I + Sbjct: 376 RFYLHYNFPPFSTGETKPLRGPGRREIGHG----ALAERALSRMIPAPDQFPYTIRIVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 ++++G + AA+ G ++L D ++ + +++G+ A+ + D+ Sbjct: 432 TLESNGSSSMAAVCGGCLSLMDAGVPIKSPVAGIAMGLIMEGNKYAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + A S+ L+ A++ ++ + Sbjct: 483 LGDEDHLGDMDFKVCGTARG-VTAIQMDIKIAGLSRQILAQALDQAREGRLHILGKMLET 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 85/237 (35%), Gaps = 29/237 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R ++L ++K A G+ LV +GDT +L TA +++ P + + T G +P Sbjct: 12 RALTLETGRLAKQAHGAVLVTYGDTMVLVTAVSQDERPGLDFFPLTCEFVEKTYAAGKIP 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA RQ R++ R LR + QII Sbjct: 72 ---GGFFKREA---RQREEEILSSRLMDRPLRPLFPEGFKRDTQIIATVLSSDKQNKADV 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA ALH G V + G L G + + D+ Sbjct: 126 LALTGASAALH-------------ISDIPWHGPVVGVRVGRLDGEFVAYPTVADIERCDI 172 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA---DLIKLQKDVISNE 241 D V IV V+G A A ++ L A + DLI+ + + Sbjct: 173 DL-VVACSRDAIVMVEGGAAEA--TEAEIIDALMFAHETAQPVIDLIEKMRAAVGKP 226 >gi|86157534|ref|YP_464319.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774045|gb|ABC80882.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 749 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR +R+I+ + GS L G+T L TL G + Sbjct: 352 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 411 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G + RALR+V+ + + D Sbjct: 412 KFMLHYNFPPFSVGEVKFLRSPGRREIGHG----ALAERALRAVMPPEDQFPYTVRVVSD 467 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 +++++G + A++ G ++L D +K VA I+ G++ G Sbjct: 468 IMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIKEGEKIAI 514 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L+ A + ++ Sbjct: 515 LSDILGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTREILEQALSQAAEGRKHILGE 573 Query: 234 QKDVIS 239 +S Sbjct: 574 MAKALS 579 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 32/238 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 E+ L V+K A GS V+ GD+ +L TA +E + + + G +P Sbjct: 42 EVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 101 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ +RE GR + R++ R+ R + Q+I + T Sbjct: 102 ---GSFFRRE---GRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 155 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA ALH G +A + + G + + D Sbjct: 156 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLA--QRADA 200 Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241 D + VM S IV V+G A+ S+ L + + L+ Q + N+ Sbjct: 201 DLDVVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDALRAATGNK 256 >gi|292486841|ref|YP_003529711.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora CFBP1430] gi|292900761|ref|YP_003540130.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946] gi|291200609|emb|CBJ47741.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946] gi|291552258|emb|CBA19295.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora CFBP1430] gi|312170909|emb|CBX79168.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 710 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 NFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKGEAFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDDNNFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISGP 544 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 24/187 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G L +++ E +D Sbjct: 130 AMIGASAALALSGL-------------PFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 176 Query: 189 ANFVMTD 195 T Sbjct: 177 LVVAGTQ 183 >gi|154490390|ref|ZP_02030651.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC 43184] gi|154089001|gb|EDN88045.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC 43184] Length = 743 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 24/245 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 RL GR+ ++R I + GS + G+T L+T TL K + N Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKADEKMIDDVLNHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL+ ++ + + D Sbjct: 379 RFLLHYNFPPFSTGEAKASRGVGRREIGHG----NLAHRALKRMIPTD--YPYVVRVISD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 +++++G + A + +AL D M+ + + IS Y I+ D Sbjct: 433 ILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMG--------LISENKGQNYAILSD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232 + ED D+D T G I Q + S + L AK+ + +++ Sbjct: 485 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKIME 543 Query: 233 LQKDV 237 Q +V Sbjct: 544 AQPEV 548 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A+G+ V+ G+T LL T V ++ + +G Sbjct: 15 RTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPLQVEYKEKFSAFGRF 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G+ R++ RALR + + ++ ++ + ADG Sbjct: 75 P---GGFTKRE---GKASDYEILTSRLVDRALRPLFPDN--YHAEVYVNVILFSADG--- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G ++ + G +V+ + E D Sbjct: 124 --------EDMPDALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEKAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D V +I+ V+G E + + +A + I + Q + Sbjct: 176 IDI-MVGATLDNIMMVEG--EMDEVQESEMLEAIKVAHEAIKVQCQAQLE 222 >gi|262042723|ref|ZP_06015877.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039948|gb|EEW41065.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 687 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + G +T Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGELTD 353 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 354 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTIEEFPYTVRVVSE 409 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 410 ITESNGSSSMASVCGASLALMDAGV-------------PVKAAVAGIAMGLVKEGDNFVV 456 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LNLAK ++ + Sbjct: 457 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNLAKGARLHILGV 515 Query: 234 QKDVIS 239 + I+ Sbjct: 516 MEQAIN 521 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 30/224 (13%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77 + A + +V DT + T ++K +T Y + G +RE Sbjct: 4 RQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGKIPGGFFRRE 60 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 GR I R+I R +R + + Q+I + A+ GA AL Sbjct: 61 ---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G + A G + +++ E + +D T++ Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAA 164 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 ++ +E S+D + ++ I ++ L K+ Sbjct: 165 VLMV---ESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 205 >gi|254496145|ref|ZP_05109043.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii LLAP12] gi|254354632|gb|EET13269.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii LLAP12] Length = 719 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R+ GR +R I++ ++ + GSCL G+T + ATL + + + Sbjct: 314 RIDGRDHKTVRPIAVRTKLLERTHGSCLFTRGETQAIVVATLGNERDAQMLDGINVESKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ RAL +V+ ++ + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRALLAVLPEASAFPYVLRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G +AL D LK VA ++ G++ Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGV-------------PLKAPVAGVAMGLIKEGDRFAV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + + + L A ++ + Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEQG-ITALQMDIKITGITSEIMEQALEQALAGRIHILGI 535 Query: 234 QKDVISNE 241 + ++ Sbjct: 536 MNNALAEH 543 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 72/227 (31%), Gaps = 34/227 (14%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRST 70 L +++ A+G+ L T +L T + E + + G +P Sbjct: 17 LETGEIARQADGAVLASMNGTQVLVTVVGKKEGGEGNDFFPLTVNYQEKFYAVGKIP--- 73 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR I R+I R +R + + QII + + + A+ Sbjct: 74 GGFNKRE---GRPSENETLISRLIDRPIRPLFPDNFTNEVQIIATVLSLNPEISSDIIAM 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL G + A G G +++ +D Sbjct: 131 IGASAALA-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKALEESKLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFF-------AMLNLAKDRIADL 230 T I+ V+ +E S+D M+ I +L Sbjct: 178 VAGTKDA-ILMVE--SEAKELSEDVMRGAIMFGHEMMKSVIKAIEEL 221 >gi|86141304|ref|ZP_01059850.1| putative polyribonucleotide nucleotidyltransferase [Leeuwenhoekiella blandensis MED217] gi|85831863|gb|EAQ50318.1| putative polyribonucleotide nucleotidyltransferase [Leeuwenhoekiella blandensis MED217] Length = 741 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 86/245 (35%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR+ ++R I GS + G+T L T TL E Sbjct: 317 LRLDGRKTTEIRPIWCETDYLPSVHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ ++ + + Sbjct: 377 ETFYLHYNFPPFSTGEARPIRGTSRREVGHG----NLAQRALKGMIPAD--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + +A+ D ++ + + G + + G + D Sbjct: 431 EILESNGSSSMATVCAGTMAIMDAGVKLKKPVSGIAM-----GLITDVETGKYA--VLSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + L+ A+D ++ D Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVKALHQARDGRLHILNHLTD 542 Query: 237 VISNE 241 IS Sbjct: 543 TISEP 547 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REIS+ K A GS +V+ G LL T + V + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSDVDFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I ++ D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMI--QLMSHD----- 122 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D + + + + ++ + G + G I++ + + D+ Sbjct: 123 ------DEVMPDAMAGLAASAAIQLSDFPFECAISEVRVGRVNGEFIINPSRAQLAESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + + ++ V+G E S++ + A + I + Q Sbjct: 177 DM-VIGASADSVMMVEG--EMDEISEEEMTEAIKAAHEAIKVQCEAQ 220 >gi|218131390|ref|ZP_03460194.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697] gi|217986322|gb|EEC52659.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697] Length = 770 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T L+T TL K+ I + Sbjct: 370 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 429 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 430 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 483 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 484 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 530 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 531 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 589 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 590 SKITECIAEP 599 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 63 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 116 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ R G KRE GR R++ RALR + + + ++ + Sbjct: 117 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 171 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V + D L + + G ++ + + G +++ + Sbjct: 172 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFD 220 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ + A + I K Q + ++ Sbjct: 221 QLEKADMDLMVGATYE-NIMMVEG--EMNEVSEKDLLEAMKAAHEAIKIQCKAQME-LAE 276 Query: 241 EV 242 EV Sbjct: 277 EV 278 >gi|170756696|ref|YP_001781955.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum B1 str. Okra] gi|226702639|sp|B1II43|PNP_CLOBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169121908|gb|ACA45744.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B1 str. Okra] Length = 702 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R GR +++R IS + G+ L G T ++T AT + ++ I + Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSQEEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + + I D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S L AK ++ K+ Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539 Query: 238 ISNE 241 I Sbjct: 540 IPEP 543 Score = 82.1 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 87/236 (36%), Gaps = 31/236 (13%) Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64 R++ + + A + +GDT ++ A+ E + + + + G Sbjct: 12 RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVDYEERLYSVG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G +KRE G+ +S R I R LR + QI+ ++ D Sbjct: 70 KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI G+ +AL S VAA+S G++ G I++ + Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T ++ V+ + ++ ++ + + +++ Q++ ++ Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIIFGFEECKNIVAFQEEAVAK 223 >gi|261407930|ref|YP_003244171.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. Y412MC10] gi|261284393|gb|ACX66364.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. Y412MC10] Length = 701 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R I + GS L G T L T A + ++ I + Sbjct: 313 VRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RAL V+ I + Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPNEVDFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +VI+++G T A+I + +A+ D +K VA ++ G++ Sbjct: 429 EVIESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGDHVS 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + + L AK+ ++ Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTPDG-VTAIQMDIKIDGIDRAILQEALQQAKEGRMHILG 534 Query: 233 LQKDVISNE 241 + I Sbjct: 535 KMAEAIQKP 543 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R + ++K A + +V++G+T +L T T + + + + G +P Sbjct: 12 RPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+ R +R + Q++ + D Sbjct: 72 ---GGFIKRE---GRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G AL G + ++ G + G +V+ + E D+ Sbjct: 126 AAMIGTSAALS-------------ISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDI 172 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I+ V+ AE ++ + + I ++ +++++ Sbjct: 173 YLVVAGTKDA-IMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVA 221 >gi|332654600|ref|ZP_08420343.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae bacterium D16] gi|332516564|gb|EGJ46170.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae bacterium D16] Length = 716 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 27/234 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 R+ GR +N++R ++ V GS L G T +L+ TL +T Sbjct: 322 RVDGRAKNEIRPLAAEVGVLPRVHGSGLFTRGQTQVLSVCTLNTLAACQKLDTIWEEDEK 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RAL V+ I + + Sbjct: 382 RYMHHYNFPPYSVGEARAPRSTNRREYGHG----ALAERALVPVLPSVEEFPYAIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----Y 172 V+ ++G T +I G+ +AL D +K VA ISCG++ Sbjct: 438 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKAPVAGISCGLIQDDNGGFT 484 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +D+ ED ++D T +G I +Q + + + L + +D Sbjct: 485 TFIDIQGVEDFHGEMDFKVAGTKAG-ITAIQMDLKNDGLTHEIIKEALEITRDA 537 Score = 85.1 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 31/236 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R +++ V++ A S +VK+G+T +L T+ P ++ E+ + Sbjct: 23 RPLTIEVGKVAELASASAMVKYGETTVLVAVTV---SPRPRDGIDFFPLSVEFEEKLYAV 79 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + ++RE GR + R+I R +R + I + D Sbjct: 80 GRIPGSFMRRE---GRPSLPAVLASRLIDRPMRPLFPYDFRNDVCIQCTVMSVDYDCSPE 136 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA + G + + G G +++ + + T Sbjct: 137 VAAMIGASACVSY-------------SEIPFAGPIGCLEVGYCDGQIVLNPNQEQRKTSR 183 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D T +V ++ A+ ++ + + IK Q D I+ V Sbjct: 184 MDVTVAATAE-KVVMIEAGADEIP------DEIMYAGIVKAHEEIKKQIDFINQIV 232 >gi|251797391|ref|YP_003012122.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2] gi|247545017|gb|ACT02036.1| Polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2] Length = 698 Score = 107 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 84/248 (33%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR ++R I + GS L G T L T A + ++ I + Sbjct: 312 VRPDGRALEEIRPIECDVALLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGISPEET 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G G R + RAL V+ I + Sbjct: 372 KRFMHHYNFPPFSVGEAR----PLRPPGRREIGHGALGERALSKVIPSETEFPYTIRLVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 428 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKDGDHFS 474 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + + L A+ ++ Sbjct: 475 ILSDIQGMEDHLGDMDFKVAGTAQG-VTAIQMDIKINGIDRAILSQALEQARIGRMHILG 533 Query: 233 LQKDVISN 240 V+S Sbjct: 534 KMTAVMSQ 541 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 30/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R + L ++K A + V++GDT +L T T + + + + G +P Sbjct: 11 RTLVLETGRLAKQANAAVTVRYGDTVVLCTVTASAEPKDLDFFPLTVNYEERLYAVGKIP 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+ R +R + Q+ + + Sbjct: 71 ---GGFIKRE---GRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVANIVMSVDQNCTPEI 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G AL G + ++ G + G I++ +++ ++ Sbjct: 125 AAMIGTSAALS-------------ISDVPFNGPIGGVNVGRVNGQFIINPTVEQEAETEI 171 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKDV 237 T I+ V+ AE ++D + D I ++ +LQ Sbjct: 172 FVTVAGTKDA-IMMVE--AEGNEVAEDVMLEAIMFGHDEIKKIVAMIEELQAAA 222 >gi|170586564|ref|XP_001898049.1| 3' exoribonuclease family, domain 2 containing protein [Brugia malayi] gi|158594444|gb|EDP33028.1| 3' exoribonuclease family, domain 2 containing protein [Brugia malayi] Length = 752 Score = 107 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 34/250 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIRN 53 R GR+ N++R +++ V K GS L + G T + +T T + + + Sbjct: 349 RCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSAAFQPDALSQLLGA 408 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 + Y +T S R+ G + +AL+ ++ + Sbjct: 409 QQKKMFMLHYQFPSFATTAISSSARTSRRELGHG----ALAEKALKRLIPDDF--PYCLR 462 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY- 172 + CDV++++G + A++ +AL D +K A I+ G++ Sbjct: 463 LACDVLESNGSSSMASVCAGCLALLDAGVQ-------------IKAPAAGIAMGLIINEE 509 Query: 173 -----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + D++ ED D+D T G+ +Q + + L A++ + Sbjct: 510 RNDYRILTDINGLEDFAGDMDFKIAGTVRGY-TAMQLDLKVPGITPKLVTESLKQARNGL 568 Query: 228 ADLIKLQKDV 237 L++L K Sbjct: 569 EHLLQLMKKA 578 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 76/228 (33%), Gaps = 22/228 (9%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 I +++ A+G+ +V G+T +L T +T ++ + G Sbjct: 45 IRFETGHIARLADGAVVVSQGETSVLATVVGRHS--SASDTADFMPLTVDFQQSASAVG- 101 Query: 73 RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 R+ + +I RMI R++R + G QII + DG + Sbjct: 102 RIPMNYLRRELQRNDADILASRMIDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVMLGL 161 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A AL +G + A+ ++ +V+ + VD Sbjct: 162 NAASAAL-------------TLSDIPWEGPLGAVRVALINNEVVVNPSRKNMKSSSVDLV 208 Query: 191 FVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 D+G I+ + ++F + + I+ LI+ V Sbjct: 209 IAGCDNGKRILMIDMDGCEIEM--ENFSECIRIGLQAISHLIQAINKV 254 >gi|218509466|ref|ZP_03507344.1| ribonuclease PH [Rhizobium etli Brasil 5] Length = 60 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 39/60 (65%), Positives = 49/60 (81%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MR SGR+ +QMR++S R SK+AEGSCLVKFGDTH+L TA+LE+K P W+RNT GW+T Sbjct: 1 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEDKTPPWLRNTAKGWVT 60 >gi|188532508|ref|YP_001906305.1| polynucleotide phosphorylase/polyadenylase [Erwinia tasmaniensis Et1/99] gi|226702651|sp|B2VGN7|PNP_ERWT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|188027550|emb|CAO95397.1| Polyribonucleotide nucleotidyltransferase [Erwinia tasmaniensis Et1/99] Length = 710 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 NFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKGDAFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDENNFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISGP 544 Score = 66.7 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQGFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G L +++ E +D Sbjct: 130 AMIGASAALALSGL-------------PFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T G ++ V+ AE S+D + Sbjct: 177 LVVAGTK-GAVLMVESEAE--LLSEDQMLGAV 205 >gi|329929308|ref|ZP_08283061.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5] gi|328936677|gb|EGG33120.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5] Length = 701 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R I + GS L G T L T A + ++ I + Sbjct: 313 VRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RAL V+ I + Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPNEVDFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +VI+++G T A+I + +A+ D +K VA ++ G++ Sbjct: 429 EVIESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGDHVS 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + + L AK+ ++ Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTPDG-VTAIQMDIKIDGIDRAILQEALQQAKEGRMHILG 534 Query: 233 LQKDVISNE 241 + I Sbjct: 535 KMAEAIQKP 543 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R + ++K A + +V++G+T +L T T + + + + G +P Sbjct: 12 RPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+ R +R + Q++ + D Sbjct: 72 ---GGFIKRE---GRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G AL G + ++ G + G +V+ + E D+ Sbjct: 126 AAMIGTSAALS-------------ISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDI 172 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I+ V+ AE ++ + + I ++ +++++ Sbjct: 173 YLVVAGTRDA-IMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVA 221 >gi|324505266|gb|ADY42265.1| Polyribonucleotide nucleotidyltransferase 1 [Ascaris suum] Length = 746 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 94/251 (37%), Gaps = 34/251 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52 +R GR N R I++ + K GS L + G T +L T T + + + Sbjct: 343 VRCDGRALNDFRPINIEVDLYKKLHGSALFQRGQTQVLGTVTFDAPSAAFHPDSISQLLG 402 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 + Y P + ++ R+ G + +AL+ ++ + + Sbjct: 403 AQRRKMFMLHYEFPPYAVNEISSSRGLNRRELGHG----ALAEKALQHLIPENF--PYSV 456 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG- 171 + C V++++G + A++ +AL D LK A ++ G++ Sbjct: 457 RLACQVLESNGSSSMASVCVGSLALLDAGV-------------PLKAPAAGVAIGLITNS 503 Query: 172 -----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T +G + +Q + A S+ ++ ++ Sbjct: 504 DASQYKLLTDILGIEDYAGDMDFKIAGTSNG-LTAMQLDLKIAGISRQLLNEAISRGREG 562 Query: 227 IADLIKLQKDV 237 IA ++ L + Sbjct: 563 IAYVLSLMEKA 573 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 26/234 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +I ++++A+G+ +V GD +L TA E T +T ++ + G Sbjct: 43 DIQFETGHLARFADGAAVVSQGDNAILATAVGERD--SSSSTTSFLPLTVDFKQSAAAVG 100 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 N ++RE R+I R++R + + Q+I + G Sbjct: 101 RIPTNYLRREMQQSDAD---ILASRIIDRSIRPLFPEQYRDATQVICKPLCLDETGDGVV 157 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I A AL + G V A+ ++ +V+ E + Sbjct: 158 LGINAASTALA-------------VSNIPWNGPVGAVRVAIIDDRVVVNPARNELKRAKL 204 Query: 188 DANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + G ++ + A + + +A + + ++S Sbjct: 205 NMVLSGCGDGKRVLMIDMDA--CEVNAVKLDECFEAGLEAVARITAAIEKIVSE 256 >gi|298209020|ref|YP_003717199.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter atlanticus HTCC2559] gi|83848947|gb|EAP86816.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter atlanticus HTCC2559] Length = 741 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 85/245 (34%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56 +RL GR+ +R I GS + G+T L T TL + Sbjct: 317 LRLDGRKTTDIRPIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANMIDMPSYEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ +V + + Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREVGHG----NLAQRALKGMVPED--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +A+ D M+ + + G ++ G + D Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGVQMKKPVSGIAM-----GLISDAESGKYA--VLSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + L A+D +++ D Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTD 542 Query: 237 VISNE 241 IS Sbjct: 543 TISQP 547 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REI++ K A GS +V+ G LL T + V + A G P Sbjct: 16 REITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSDVDFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMIQLMSHDDD----- 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D + + + + ++ G + G +++ + + D+ Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFVINPTRTQLAESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + + ++ V+G E S++ + A + I + Q Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMTEAIKFAHEAIKVQCEAQ 220 >gi|227112579|ref|ZP_03826235.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 706 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR R+I R +R + L Q+I + Sbjct: 75 --GGFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + G L +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGVARVGYLNDQYVLNPTMDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T+ G ++ V+ +E S+D + ++ I ++ L + Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAVVFGHEQQQIVIQNINALVAEA 226 >gi|254437652|ref|ZP_05051146.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus 307] gi|198253098|gb|EDY77412.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus 307] Length = 710 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+ +++R+I + GS L G+T L TL + ++ G Sbjct: 318 RIDGRKTDEIRDIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDSLSGMYKS 377 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RAL++V+ + I + + Sbjct: 378 NFMLHYNFPPYSVGEVGRFGFTGRREIGHG----KLAWRALQAVLPAATDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLIMQDDGSYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + L AK ++ Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPAIMKEALAQAKVGRVHILG 539 Query: 233 LQKDVISN 240 +S+ Sbjct: 540 EMNKALSS 547 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 37/233 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+G+ + +G+T ++ T + + +G G +P Sbjct: 16 LTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLTVHYGEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVEGF--KNEVLVICTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG------ 180 A+ A AL G +AA G G I++ + Sbjct: 128 MVAMIAASAALTISGA-------------PFMGPIAACRVGFEGGDYILNPEMDDMHKLR 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 E+ +D T ++ V+ +E S++ + A +I +I + Sbjct: 175 ENPDQRLDLVVAGTKDA-VMMVE--SEAYELSEEEMLGAVEFAHAQIQPVIDM 224 >gi|195341759|ref|XP_002037473.1| GM12088 [Drosophila sechellia] gi|194131589|gb|EDW53632.1| GM12088 [Drosophila sechellia] Length = 485 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 90/250 (36%), Gaps = 17/250 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR +Q+R IS + K GS L + G T + T +L+ + ++ Sbjct: 68 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 127 Query: 57 GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 G + A Y P +TG + G G R + R+L + Sbjct: 128 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRRELGHGALAERSLLPTLPND--YPFT 181 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + +V++++G + A++ G +AL D + + + V K + + Sbjct: 182 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 240 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G +Q + L A D + ++ Sbjct: 241 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 299 Query: 232 KLQKDVISNE 241 + + I Sbjct: 300 DIMSEAIREP 309 >gi|328777663|ref|XP_395806.4| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Apis mellifera] Length = 210 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 17/186 (9%) Query: 64 GMLPRS--TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 M S +G R ++ R +SQE + A+ +++ L QI I + +Q Sbjct: 22 SMAVFSLSSGERKRKP----RGDRKSQERSLQLKHAMEAIIHLELYPRSQIDIYVEALQV 77 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG A++ A +AL D +++ + ++ + + + G ++D +Y E Sbjct: 78 DGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLEKG--VLDANYVE 135 Query: 182 DSTIDVDANFV-------MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + V + V ++ G IV QG+ +R SQ L D+ + Sbjct: 136 ECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLC--GCQDIKTIL 193 Query: 235 KDVISN 240 + Sbjct: 194 DHAVRQ 199 >gi|227327831|ref|ZP_03831855.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 706 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 73/233 (31%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLTVNYQERTYAAGRFP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR R+I R +R + L Q+I + Sbjct: 75 --GGFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + G L +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGVARVGYLNDQYVLNPTMDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T+ G ++ V+ AE S+D + ++ I ++ L + Sbjct: 177 LVVAGTE-GAVLMVESEAE--LLSEDQMLGAVVFGHEQQQIVIQNINALVAEA 226 >gi|163790856|ref|ZP_02185281.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7] gi|159873924|gb|EDP68003.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7] Length = 702 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R ++ + A GS L G T L+ AT E ++ + Sbjct: 318 IRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSVATLAPLGEHQIIDGLGVENS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ S G R + RAL V+ I + Sbjct: 378 KRFIHHYNFPQYSVGS----TGPSRGPGRREIGHGALGERALSQVIPSEEDFPYMIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVKEGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK +++ Sbjct: 481 VLTDIQGLEDHLGDMDFKVAGTSKG-ITALQMDIKIEGITEQILEEALIQAKKARMEILN 539 Query: 233 LQKDVISNE 241 I+ Sbjct: 540 ELTSTIAEP 548 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 94/233 (40%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ L+++ DT +L+ A +K V + + G +P Sbjct: 14 RTLTIEVGQLAKQANGATLIRYNDTVVLSAAVASKKAKDVDFFPLTVNYDEKMYSVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KREA R + R+I R +R + QI + + Sbjct: 74 ---GGFIKREA---RPSEYATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDQNCSPAF 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +A+ G+ ++L G +A++ G + G I++ +++ D+ Sbjct: 128 SAMFGSSLSLA-------------ISDIPFNGPIASVDVGRVDGEYIINPTVEQEALSDI 174 Query: 188 DANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T ++VE G+AE S++ L I +L+ Q+++++ Sbjct: 175 HLTVAGTKDAINMVE-SGAAE---VSEEDMLGALMFGHRAIQELVAFQEEIVA 223 >gi|255319690|ref|ZP_05360898.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SK82] gi|262380027|ref|ZP_06073182.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SH164] gi|255303219|gb|EET82428.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SK82] gi|262298221|gb|EEY86135.1| polyribonucleotide nucleotidyltransferase [Acinetobacter radioresistens SH164] Length = 699 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R + + V + A GS L G+T L TATL + TK Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTATLGNTRDALMVDTLSGTKTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + + D Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPPVDRFPYVLRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLALMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFTGRMHILNE 538 Query: 234 QKDVIS 239 VIS Sbjct: 539 MNKVIS 544 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 78/237 (32%), Gaps = 43/237 (18%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++ L V++ A S L+ G +L P +T Y + G Sbjct: 17 QVVLETGRVARQAN-SVLITMGGVSVLVAVV---AQPTAKAGQDFFPLTVNYQEKQYAAG 72 Query: 72 NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123 + G++ GR+ E I R+I R +R + Q+ + AD Sbjct: 73 ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMDAD- 128 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AA+ G AL +G +A G++ G I++ ++ + Sbjct: 129 ---IAAMLGTSAALSIAGT-------------PFRGPIAGARVGLINGEYILNPNHEQLK 172 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 D+D T++ ++ +E S+D + +A I + Sbjct: 173 ESDLDLVVAGTETAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226 >gi|210622620|ref|ZP_03293280.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275] gi|210154121|gb|EEA85127.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275] Length = 695 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKH 56 +R R+ N++R I + GS + G T ++ ATL V + ++ Sbjct: 316 VRPDNRKYNEIRPIWCETGMIPRTHGSAIFTRGQTQVMNIATLGALGDVQKLDGLDEEEN 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ I + Sbjct: 376 KRYMHHYNFPAYSVGEARPSRGPGRREIGHG----ALAERALLPVIPSQEDFPYAIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 +V+ ++G T A++ + ++L D +K VA I+ G++ Sbjct: 432 EVLSSNGSTSQASVCASTLSLLDAGV-------------PIKDMVAGIAMGLIKHHDKVV 478 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + +D L A++ ++ Sbjct: 479 VLSDIQGMEDHLGDMDFKVAGTEHG-ITAIQMDIKIDGIDEDILRRALAQAREGRMHILG 537 Query: 233 LQKDVISNE 241 + VIS Sbjct: 538 EMRKVISEP 546 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 92/234 (39%), Gaps = 27/234 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGML 66 RE+S+ + G+C+VK+GD+ ++ +A + + + + + G + Sbjct: 14 RELSVEVGKICEMTNGNCIVKYGDSVVMVNTTKSAEPRDGIDFFPLSVDYEEKLYSVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q++ + D Sbjct: 74 P---GGFLKRE---GKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDQDCTPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL G ++ G++ G +V+ + + + Sbjct: 128 IVAMIGSSVALS-------------ISDIPFNGPTGSVCIGLVDGEFVVNPNAEQREKSE 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T I+ V+ A+ S+D + A + I +++ +++++ Sbjct: 175 MHLVVSGTKDA-IMMVEAGAQE--VSEDTMLKAILFAHEHIKKIVEFIEEIVAG 225 >gi|163734274|ref|ZP_02141714.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis Och 149] gi|161392282|gb|EDQ16611.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis Och 149] Length = 711 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 27/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R+I + GS L G+T L TL + HG + Sbjct: 318 RIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + + + + Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGSYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AK ++ Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALEQAKAGRIHILG 539 Query: 233 LQKDVI 238 I Sbjct: 540 EMAKAI 545 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 78/234 (33%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R LR + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPLRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G +A G G +++ D D Sbjct: 128 MVAMIAASAALTISGA-------------PFMGPIAGCRVGYEGGEYVLNPTV--DDMQD 172 Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + N V ++ V+ +E S+ + A D I ++ L Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVKFAHDAIQPVLDL 224 >gi|261820132|ref|YP_003258238.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium wasabiae WPP163] gi|261604145|gb|ACX86631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae WPP163] Length = 706 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 67/212 (31%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R +R + L Q+I + Sbjct: 75 --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G L +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFSGPIGAARVGYLNDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T G ++ V+ AE S+D + Sbjct: 177 LVVAGTQ-GAVLMVESEAE--VLSEDQMLGAV 205 >gi|227824076|ref|YP_002828049.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium fredii NGR234] gi|254782732|sp|C3MC71|PNP_RHISN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|227343078|gb|ACP27296.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii NGR234] Length = 717 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I + GS L G+T + ATL ++ G Sbjct: 317 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 377 RFMLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + + A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ LN AK ++ Sbjct: 484 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIEGITEEIMGIALNQAKGGRLHILGEMAKA 542 Query: 238 ISN 240 IS Sbjct: 543 ISE 545 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q+I+ V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIVT--VMQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G + G + G +++ E Sbjct: 126 PDVVSMVAASAALTLSGI-------------PFMGPIGGARVGYINGEYVLNPHLDEMDE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E +D + + +I Sbjct: 173 SSLDLVVAGTQEAVLMV---ESEAKELPEDVMLGAVVFGQQGFQPVIDA 218 >gi|253686990|ref|YP_003016180.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259534139|sp|C6DKK7|PNP_PECCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|251753568|gb|ACT11644.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 706 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 99/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ ++ + + + Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKASEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 68/212 (32%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R +R + L Q+I + Sbjct: 75 --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G L +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFSGPIGAARVGYLNDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T+ G ++ V+ +E S+D + Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAV 205 >gi|126696730|ref|YP_001091616.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9301] gi|187610309|sp|A3PE40|PNP_PROM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|126543773|gb|ABO18015.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 721 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 36/238 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A GS +++ GDT LL TAT K + + +Y Sbjct: 13 REIRLTTGLYAPQANGSVMIECGDTSLLVTATKTTK----KEVSDFLPLICDYEEKLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122 R G ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 69 GRIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPAD 125 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 A+TGA +A G +AA+ G++ I++ Y E Sbjct: 126 ----ILAVTGASIA-------------TLLGEIPFYGPMAAVRVGLIGDDFILNPSYREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + +++LIK Q+D++ + Sbjct: 169 EKGDLDIVVAGSKEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVSELIKSQEDLLKD 223 Score = 94.8 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 93/252 (36%), Gaps = 33/252 (13%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR +++R+IS + + K GS L + G T +L+T TL P + + Sbjct: 323 RVDGRDLDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380 Query: 61 AE------YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 E Y P S G R R G R + RA+ V+ + Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRT-----PGRREIGHGALAERAIIPVLPGKETFPYVLR 435 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171 + +V+ ++G T ++ G+ ++L D LK V+ + G++ Sbjct: 436 VVSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVSGTAMGLIKEGK 482 Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 + D+ ED D+D TD G I +Q + + A+ Sbjct: 483 EVRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVSIISDAIKKARPARLH 541 Query: 230 LIKLQKDVISNE 241 +++ ++ I Sbjct: 542 ILEKMQEAIEKP 553 >gi|86606857|ref|YP_475620.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. JA-3-3Ab] gi|123504388|sp|Q2JQF4|PNP_SYNJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|86555399|gb|ABD00357.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. JA-3-3Ab] Length = 712 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 89/246 (36%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR+ +++R +S + GS L G T +L+ TL + Sbjct: 321 VRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLSITTLGTPGDAQELDDLHPVDE 380 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + R+ G + RAL V+ + + Sbjct: 381 KRYMHHYNFPGFSVGEVRPSRSPGRREIGHG----ALAERALVPVLPKEEEFPYVVRVVS 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V+ ++G T A++ G+ ++L D +K V+ ++ G++ Sbjct: 437 EVLSSNGSTSMASVCGSTLSLMDAGV-------------PIKAPVSGVAMGLIKEGDEVR 483 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I +Q + + D L AK ++ Sbjct: 484 ILTDIQGIEDFLGDMDFKVAGTRAG-ITALQMDMKITGITVDVVEKALLQAKAGRDYILD 542 Query: 233 LQKDVI 238 +V+ Sbjct: 543 KMLEVL 548 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 26/233 (11%) Query: 12 REISLTRRVSKYAEGS-CLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 REI + + G + G+T +L TAT V + G +P Sbjct: 13 REIDINIGLMAPQAGCGVWLTSGETSVLVTATRQAGRAGVDFLPLLVDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR R+ I R+I R LR + QI+ + Sbjct: 73 ---GGYLRRE---GRPPERATLISRLIDRPLRPLFPEWLRDDVQIVATTLSVDDKVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I GA +A+H G VAA+ G++ I++ Y E D+ Sbjct: 127 LCILGASLAIHSA-------------RIPFNGPVAAVRVGLVKDEFIINPTYAEIEAGDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D G ++ V+ A + + + + + +L+K Q+ V ++ Sbjct: 174 DLVVAGCADG-VIMVEAGANQ--LPEKDVVEAIEFGFEAVQELLKAQQQVFAD 223 >gi|56698213|ref|YP_168585.1| polynucleotide phosphorylase/polyadenylase [Ruegeria pomeroyi DSS-3] gi|81348968|sp|Q5LN23|PNP_SILPO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56679950|gb|AAV96616.1| polyribonucleotide nucleotidyltransferase [Ruegeria pomeroyi DSS-3] Length = 714 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + GS L G+T L TL + HG + Sbjct: 318 RIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + +L+ + + D+ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGSYA--------VLTDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A + + L+ AKD ++ Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALSQAKDGRMHILAEMNKA 544 Query: 238 ISN 240 +S Sbjct: 545 LSG 547 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L +++ A+GS + G+T ++ T + +T Y + Sbjct: 16 LTLESGKIARQADGSVVATLGETRVMANVTFAREQKP---GQDFFPLTVHYQEKYYAAGK 72 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 73 VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G +A G + G +++ D D Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAGCRVGYVDGEYVLNPTV--DDMQD 172 Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + N V ++ V+ +E ++ + A +I ++ L Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELTEAEMLGAVTFAHAQIQPVVDL 224 >gi|259907046|ref|YP_002647402.1| polynucleotide phosphorylase/polyadenylase [Erwinia pyrifoliae Ep1/96] gi|224962668|emb|CAX54123.1| Polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae Ep1/96] Length = 732 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 337 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 396 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 397 NFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKGDAFPYTVRVVSE 452 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 453 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDDNNFVV 499 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 500 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 558 Query: 234 QKDVISNE 241 + IS Sbjct: 559 MEQAISGP 566 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 24/187 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 38 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 94 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR R+I R +R + + Q+I + Sbjct: 95 IPGSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 151 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G L +++ E +D Sbjct: 152 AMIGASAALALSGL-------------PFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 198 Query: 189 ANFVMTD 195 T Sbjct: 199 LVVAGTK 205 >gi|303239217|ref|ZP_07325746.1| polyribonucleotide nucleotidyltransferase [Acetivibrio cellulolyticus CD2] gi|302593262|gb|EFL62981.1| polyribonucleotide nucleotidyltransferase [Acetivibrio cellulolyticus CD2] Length = 703 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 89/239 (37%), Gaps = 23/239 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R +S + GS L + G T +LT TL + + + T Sbjct: 312 RVDGRRLDEIRPLSADVGLLPRVHGSGLFQRGQTQVLTIVTLGALGDVQVLDGIELEETK 371 Query: 62 EYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M + EA + R G R + RAL V+ + + +V+ Sbjct: 372 RY-MHHYNFPGYSVGEAKTSRGPGRREIGHGALAERALEPVIPSQEEFPYTMRLVSEVLM 430 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-------P 173 ++G T ++ G+ +AL D +K VA IS G++ Sbjct: 431 SNGSTSQGSVCGSTLALMDAGV-------------PIKKPVAGISAGLVVDEDEPGRFVT 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 +D+ ED D+D T G I +Q + +++ L + +I Sbjct: 478 FMDIQGIEDFFGDMDFKVAGTKDG-ITAIQVDIKVDGLTEEIVEQAFELTRKGRLQIID 535 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 30/228 (13%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGML 66 R + + + GS +V++GDT +L +A E + + + + G + Sbjct: 12 RTLVIETGKLAQLSNGSVMVRYGDTVVLSNATASAKPREGIDFFPLSVDYEERLYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R LR + ++ + D Sbjct: 72 P---GGFIKRE---GKPSEKAILTSRVIDRPLRPLFPKDLRNDVALVNTVMSVDQDNSPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA +AL G V + G++ G +++ D + Sbjct: 126 VAALLGASMALS-------------ISDIPFNGPVGGVILGLVDGKVVINPDAKQREKSQ 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + T IV ++ A ML+ + ++ K+ Sbjct: 173 MYVTLAATRE-KIVMIEAGANEVP-----DDVMLDAIRQGHQEIRKIC 214 >gi|195575304|ref|XP_002105619.1| GD16436 [Drosophila simulans] gi|194201546|gb|EDX15122.1| GD16436 [Drosophila simulans] Length = 771 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 90/250 (36%), Gaps = 17/250 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR +Q+R IS + K GS L + G T + T +L+ + ++ Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 413 Query: 57 GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 G + A Y P +TG + G G R + R+L + Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRRELGHGALAERSLLPTLPND--YPFT 467 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + +V++++G + A++ G +AL D + + + V K + + Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLEDY 526 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G +Q + L A D + ++ Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 585 Query: 232 KLQKDVISNE 241 + + I Sbjct: 586 DIMSEAIREP 595 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 30/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPR 68 R ++ + ++++A G+ + + GDT ++ TA V N G+ + +Y + Sbjct: 50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTA-----VAKTKPNPGQGFMPLVVDYRLKNA 104 Query: 69 STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 ++G R+ + G +EI R+I R+LR + Q++ + + A Sbjct: 105 ASG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPD 163 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A +AL G + A+ G+ G +++ E T Sbjct: 164 VLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQ 210 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236 +D T +V ++G + Q + A+ I ++ +LQK Sbjct: 211 LDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262 >gi|163787538|ref|ZP_02181985.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteriales bacterium ALC-1] gi|159877426|gb|EDP71483.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteriales bacterium ALC-1] Length = 751 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 83/245 (33%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56 +RL GR+ ++R I GS + G+T L T TL Sbjct: 317 LRLDGRKTTEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLGTSRDANQIDMPSQEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + RAL+ +V + + Sbjct: 377 ERFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRALKGMVPDD--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +A+ D M + + G ++ G + D Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGVQMTKPVSGIAM-----GLISDADSGKYA--VLSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + L A+D +++ D Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALQQARDGRLHILEKLTD 542 Query: 237 VISNE 241 I+ Sbjct: 543 TIAQP 547 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REIS+ K A GS +V+ G LL T ++ V + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDVNFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I ++ D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHSETQVMI--QLMSHD----- 122 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D + + + + ++ G + G I++ + + D+ Sbjct: 123 ------PEVMPDAMAGLAASAAIQLSDFPFECPISEARVGRINGEFIINPTFAQLEESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + + ++ V+G E S++ + A + I Q Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMADAIKFAHEHIKVQCAAQ 220 >gi|332993351|gb|AEF03406.1| polynucleotide phosphorylase/polyadenylase [Alteromonas sp. SN2] Length = 703 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R + + + GS + G+T + ATL + + + + Sbjct: 314 RIDGRDPKMIRALDVATGILPRTHGSAVFTRGETQAIVAATLGTERDAQMIDELQGRRDS 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R +++V+ + I + Sbjct: 374 RFMLHYNFPPYCVGETGMIGSPKRREIGHG----RLAKRGIQAVMPSEEEFPYVVRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKSDENFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L AK+ ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGT-TGGITALQMDIKIEGITKEIMQIALKQAKEARLHILNV 535 Query: 234 QKDVISNE 241 + I Sbjct: 536 MDEAIGGH 543 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 27/232 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT +L T +++ + + T G +P Sbjct: 15 VTLETGVIARQATAAVMASMDDTAVLVTVVGKKEAKADQDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + Q++I D T Sbjct: 74 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVITVMSANPDIPTDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G G I++ E + D+D Sbjct: 129 SMIGTSAALAISGI-------------PFNGPIGAARVGYTDGEYILNTRVEEQADSDLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T+ G ++ V+ +E S+D + +++ ++ K+ +N Sbjct: 176 LVVAGTE-GAVLMVE--SEADVLSEDVMLGAVMFGHEQLQTVVTAVKEFAAN 224 >gi|296533820|ref|ZP_06896357.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis ATCC 49957] gi|296265856|gb|EFH11944.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis ATCC 49957] Length = 735 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I V A GS L G+T L ATL I + G Sbjct: 312 LRIDGRDTKTVRPIMAEVGVLPRAHGSALFTRGETQALAVATLGTGQDEQIIDQLAGEYR 371 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S + G G R ++ RA+ ++ + + Sbjct: 372 ENFMLHYNFPPYSVNETGR----MGSPGRREIGHGKLAWRAIHPLLPEKEKFPYTMRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A + G ++L D LK A I+ G++ Sbjct: 428 EITESNGSSSMATVCGTSLSLMDAGV-------------PLKRPCAGIAMGLIKEEKGFA 474 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T+ G I +Q + + + + L AK Sbjct: 475 VLSDILGDEDHLGDMDFKVAGTEQG-ITALQMDIKITSITPEIMKIALEQAKGG 527 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V++ A+G+ + + GDT +L T V +T Y + G Sbjct: 17 LTLETGKVARQADGAVMARLGDTIVLCTVVGARSVKP---GQDFFPLTVNYQEKAFAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR I R+I R +R + Q+I + Sbjct: 74 IPGGFFKRE---GRPSEAETLISRLIDRPIRPLFPEGFRNEVQVIATVLSHDMENSPDIV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G V A + G +++ + +D Sbjct: 131 ALVGCSAALTLSGI-------------PFFGPVGAARVAYIDGQYVLNPTLEQMKNTQLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T G ++ +E + +++ + I +I+L + Sbjct: 178 LVVAGTAEGVLMV---ESEASELTEEVMLGAVTFGHQSFQPVIEGIIELAEKA 227 >gi|62531249|gb|AAH92603.1| Pnpt1 protein [Rattus norvegicus] Length = 452 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R IS + K GS L + G T +L T T + +++ I Sbjct: 26 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 85 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL V+ I Sbjct: 86 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 139 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + G + Y Sbjct: 140 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEK---GEIEDYR 196 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 197 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPVKIIMEAIQQATVAKREILQ 255 Query: 233 LQKDVISNE 241 IS Sbjct: 256 TMSKTISKP 264 >gi|90422008|ref|YP_530378.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris BisB18] gi|122477503|sp|Q21C27|PNP_RHOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|90104022|gb|ABD86059.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris BisB18] Length = 715 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I V A GS L G+T L TL ++ G Sbjct: 316 RIDGRDSKTVRNIVAQVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+ V+ + + + Sbjct: 376 TFLLHYNFPPYSVGETGRMGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + A +++ L AKD ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541 Query: 238 ISN 240 ++N Sbjct: 542 LTN 544 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 36/235 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T + +E V + T G + Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKSAKEGVDFLPLTVDYIEKTYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ + AL KG + A G + +++ E Sbjct: 128 ILALVASSAALTLSGA-------------PFKGPIGAARVGFINDEYVLNPTLDEMVDTQ 174 Query: 187 VDANFVMTDSGHIV------EVQGSAERAT--FSQDHF----FAMLNLAKDRIAD 229 +D T ++ E+ F HF A++ LA+ + Sbjct: 175 LDLVVAGTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKE 229 >gi|283476842|emb|CAY72680.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM 12163] Length = 738 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 343 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 402 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 403 NFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKGDAFPYTVRVVSE 458 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 459 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDDNNFVV 505 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 506 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 564 Query: 234 QKDVISNE 241 + IS Sbjct: 565 MEQAISGP 572 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 24/187 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 44 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 100 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR R+I R +R + + Q+I + Sbjct: 101 IPGSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 157 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G L +++ E +D Sbjct: 158 AMIGASAALALSGL-------------PFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 204 Query: 189 ANFVMTD 195 T Sbjct: 205 LVVAGTK 211 >gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein, putative [Penicillium marneffei ATCC 18224] gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein, putative [Penicillium marneffei ATCC 18224] Length = 283 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 3/144 (2%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N++R + + + GS + G+T ++ T + + + Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCTVHGPHETSGAGSSATEAVVD 73 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 + + + +R +R S RQ S ++ + A +S + S I + V+ Sbjct: 74 VDVNIAGFAGVDRKRRAGGSDRQ---STQLSTALKSAFQSHLHTSLYPHSTITVQVSVLS 130 Query: 121 ADGGTRTAAITGAWVALHDCLQHM 144 +DG AAI +AL D M Sbjct: 131 SDGSLFAAAINACTLALVDAGIPM 154 >gi|21231940|ref|NP_637857.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767933|ref|YP_242695.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. campestris str. 8004] gi|81306090|sp|Q4UW98|PNP_XANC8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81793552|sp|Q8P7V1|PNP_XANCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21113669|gb|AAM41781.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573265|gb|AAY48675.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris str. 8004] Length = 704 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS+ V GS L G+T + TL + + G Sbjct: 315 VRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEDDRFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536 Query: 233 LQKDVISNE 241 ++ Sbjct: 537 EMSKALTTP 545 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL TA T E + + G +P Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G G I++ E ++ Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTITELKDSQLE 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + ++ +E A S++ + + +I + + Sbjct: 176 LVVAGTANAVLMV---ESEAALLSEEVMLGAVTFGHREMQKVINIINE 220 >gi|294624709|ref|ZP_06703376.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665176|ref|ZP_06730476.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600982|gb|EFF45052.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605040|gb|EFF48391.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 704 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS T V GS L G+T + TL + + G Sbjct: 315 VRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPTLEEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536 Query: 233 LQKDVISNE 241 ++ Sbjct: 537 EMAHALTTP 545 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 88/258 (34%), Gaps = 48/258 (18%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +VKF DT LL TA + E + + G +P Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL KG + A G G I++ E ++ Sbjct: 129 ALIGASAALSLAGT-------------PFKGPIGAAKVGYKNGEYILNPTVTELKDSQLE 175 Query: 189 ANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLN----------------LAK 224 T + ++ E +E TF ++N +A Sbjct: 176 LVVAGTANAVLMVESEADLLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAP 235 Query: 225 DRIADLIKLQKDVISNEV 242 + +I K+ + +++ Sbjct: 236 AKNDGMIAALKEAVGDQL 253 >gi|149411987|ref|XP_001513016.1| PREDICTED: similar to polymyositis/scleroderma autoantigen 1 [Ornithorhynchus anatinus] Length = 439 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 97/260 (37%), Gaps = 30/260 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GRQ R I ++ + Y G C+V+ G T +L + E P R T+ G + Sbjct: 23 RLDGRQIYDYRNIKISFG-TDY--GCCIVELGKTRVLGQVSCELVAPKLNRATE-GILFF 78 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 + ++ GRQ ++ R++ R LR VD +L G + QI Sbjct: 79 NLELSQMASPA-----FEPGRQSDLLVKLNRLLERCLRNSKCVDTESLCVIAGEKVWQIR 133 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163 +D V+ DG AA A VAL + + + + + Sbjct: 134 VDLHVLNHDGNILDAASIAAIVALCHFRRPDVSVQGDEITLYTPEERDPVPLSIHHMPIY 193 Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 +S Y +VD E+ +D M I +Q S +D Sbjct: 194 VSFAFFLQGAYLLVDPSEREERVMDGLMVIAMNKHREICTIQSSG-GVMLLKDQVLRCSK 252 Query: 222 LAKDRIADLIKLQKDVISNE 241 +A ++A++ +L + + N+ Sbjct: 253 IAGVKVAEITELIQKALEND 272 >gi|300854507|ref|YP_003779491.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii DSM 13528] gi|300434622|gb|ADK14389.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii DSM 13528] Length = 717 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 16/229 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R+ GR +++R IS + G+ L G T ++T ATL + I + + Sbjct: 315 RVDGRAFDEIRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGSLGDVQILDGVGSEESK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y STG R+ G + +AL ++ I + + Sbjct: 375 RYIHHYNFPSYSTGETRPLRGPGRREIGHG----ALAEKALEPLIPSEDQFPYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A+I G+ +AL D ++ + + + ++ + D+ Sbjct: 431 VLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLITSEDLS-------KEEIVTDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T+ G I +Q + S++ LN A+ Sbjct: 484 QGIEDFFGDMDFKVGGTEKG-ITAIQFDTKIHGLSENCIRETLNRARTA 531 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 26/215 (12%) Query: 30 VKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85 + +GDT +L A E V + + ++ G +P G +KRE G+ Sbjct: 34 ISYGDTVVLINANASDKPREGVDFFPLSIEYEERLYSVGKIP---GGFIKRE---GKPSE 87 Query: 86 RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145 ++ R I R LR + Q++ + D AI GA +AL Sbjct: 88 KAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNAPDILAINGASLALCM------ 141 Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205 S V A+S G++ G +++ E S ++ TD ++ V+ Sbjct: 142 -------SSIPFTTPVGAVSVGLVDGKFVINPGLEERSKSSLNLTVCATDE-RVMMVEAG 193 Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + +D + + + ++ QK+ ++ Sbjct: 194 GDEIP--EDTMYDAIMFGFEECKKIVAFQKETMNK 226 >gi|284006672|emb|CBA71934.1| polyribonucleotide nucleotidyltransferase [Arsenophonus nasoniae] Length = 708 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + + G T Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDELMGEYTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPNQSEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ Y + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKENDDYVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITREIMQVALNQAKGARLHILTI 536 Query: 234 QKDVISNE 241 ++ I+ Sbjct: 537 MEEAINRP 544 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 79/247 (31%), Gaps = 38/247 (15%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 +++ + + A + +V DT + T ++KV +T Y + G Sbjct: 16 VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKV---KEGQDFFPLTVNYQERSYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR G I R+I R LR + QII I Sbjct: 73 IPGSFFRRE---GRPGEGETLIARLIDRPLRPLFPEGFFNEIQIIATVVSINPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E + +D Sbjct: 130 AMIGASAALSISGI-------------PFNGPIGAARVGYIDDQYVLNPTVDELKSSRLD 176 Query: 189 ANFVMT---------DSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQK 235 T ++ + E Q F + ++ LA + + Q Sbjct: 177 LVVAGTSSAVLMVESEADLLTEEQMLG-AVVFGHEQQQIVIENINALAAETNKEKWDWQP 235 Query: 236 DVISNEV 242 + I+ E+ Sbjct: 236 EAINEEL 242 >gi|21243412|ref|NP_642994.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis pv. citri str. 306] gi|81801072|sp|Q8PJ59|PNP_XANAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|21108963|gb|AAM37530.1| polynucleotide phosphorylase [Xanthomonas axonopodis pv. citri str. 306] Length = 704 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS T V GS L G+T + TL + + G Sbjct: 315 VRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPTLEEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536 Query: 233 LQKDVISNE 241 ++ Sbjct: 537 EMAHALTTP 545 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +VK DT LL TA + E + + G +P Sbjct: 15 VTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL KG + A G G I++ E ++ Sbjct: 129 ALIGASAALSLAGT-------------PFKGPIGAAKVGYKNGEYILNPTVTELKDSQLE 175 Query: 189 ANFVMTDSGHIV 200 T + ++ Sbjct: 176 LVVAGTANAVLM 187 >gi|296223817|ref|XP_002757788.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial [Callithrix jacchus] Length = 784 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R +S + K GS L + G T +L T T + ++V I Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQVITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + +AL V+ I Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPKDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIDDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPIKIVMEAVQQASVAKKEILQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+GS +V+ GDT ++ T T + A G +P Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTVVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE + + R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGT---SDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA VAL G V A+ GM+ G +V+ E S+ Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|317129156|ref|YP_004095438.1| polyribonucleotide nucleotidyltransferase [Bacillus cellulosilyticus DSM 2522] gi|315474104|gb|ADU30707.1| polyribonucleotide nucleotidyltransferase [Bacillus cellulosilyticus DSM 2522] Length = 697 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L T A + ++ + + Sbjct: 313 IRPDGRKPDEIRALASEIDILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGIEET 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL V+ I + Sbjct: 373 KRFMHHYNFPSFSVGE----TGPIRGPGRREIGHGALGERALEQVIPSEEDFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G T A+I + +A+ +K VA I+ G++ Sbjct: 429 EVLESNGSTSQASICASTLAMMAAGV-------------PIKAPVAGIAMGLVKHEEDVT 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + + + L+ A++ +++ Sbjct: 476 VLTDIQGMEDALGDMDFKVAGTKKG-VTAIQMDIKISGIDRAVLEQALSQAREGRIKILE 534 Query: 233 LQKDVISNE 241 + IS Sbjct: 535 SMESAISTP 543 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L TA+ E K +P + + G +P Sbjct: 15 RTLTIEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+I D Sbjct: 75 ---GGFIKRE---GRPSDHAVLTSRLIDRPIRPMFPDGFRNDVQVISIVMSNDQDAPAEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A ++ G + G I++ + T D+ Sbjct: 129 AAMIGSSLALS-------------VSDIPFSGPIAGVTIGRIDGEFIINPTPQQLETSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + V + I V+ AE ++ L D I +I Q+D++S Sbjct: 176 EL-VVAGNKDAINMVEAGAEEVP--EETILEALMYGHDEIKRIIAFQEDIVSK 225 >gi|262280783|ref|ZP_06058566.1| polyribonucleotide nucleotidyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262257683|gb|EEY76418.1| polyribonucleotide nucleotidyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 697 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I + V A GS L G+T L T TL + TK Sbjct: 317 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D +++G I +Q + +++ LN A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSENG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538 Query: 234 QKDVIS 239 VIS Sbjct: 539 MNKVIS 544 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 + L V++ A + LV G +L P +T Y + G Sbjct: 18 VVLETGRVARQAN-TVLVTMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAGR 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 KRE GRQ I R+I R +R + I + VI +D Sbjct: 74 IPGGYGKRE---GRQSEAETLISRLIDRPIRPLFPEGFYNE--IQVTATVISSDKTMDAD 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA A+ + +G +A G++ G I++ + + D Sbjct: 129 IAAMIGASAAMSIA-------------AVPFRGPIAGARVGLINGEYILNPTHEQLKESD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 +D T+S ++ +E S+D + +A I + Sbjct: 176 LDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAA 226 >gi|237750416|ref|ZP_04580896.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC 43879] gi|229373946|gb|EEO24337.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC 43879] Length = 734 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 30/245 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR ++REIS+ + GS G T L T TL + + I Sbjct: 353 RADGRALREIREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQNDAQTQEGILTQGKS 412 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 I Y P S G A S R+ G + +A+ S V A I + + Sbjct: 413 KIIFHYNFPPFSVGEAYPIGASSRRELGHG----NLALKAIESNV---ANTPHTIRLVSE 465 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 ++Q++G + A++ GA +AL M VA I+ G++ Sbjct: 466 ILQSNGSSSMASVCGASLALLGADIKM-------------HNMVAGIAMGLIYESEERFA 512 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D + G +Q + S+ L A++ I ++ Sbjct: 513 ILSDIMGLEDFDGDMDFKIAGNEKG-FSALQLDIKIHGLSESILNQSLEQAREGILHILS 571 Query: 233 LQKDV 237 L ++V Sbjct: 572 LMRNV 576 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 39/230 (16%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGMLPRSTGNRVK 75 + A+ S ++K G + LL + ++ + P + ++ G +P +K Sbjct: 48 YATLADRSVMLKVGGSVLLCSVCVDYENPSSEDFLPLSVQYVEKMYAIGKIP---QGFLK 104 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA--AITGA 133 +E G+ I R+I R+LR + QI I V+ D A+ A Sbjct: 105 KE---GKPSDNEILISRLIDRSLRPLFPKDYPYPVQITI--LVMSYDNKIDICQKAMNLA 159 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVDANF 191 + L+ + KG + I + DL+ +S +D+ Sbjct: 160 SICLYLSSIPLTQ-----------KGILNGIRVMRRDDEFSLCDDLNDLLESKLDL-FVS 207 Query: 192 VMTDSGHIVEVQG----SAERAT-------FSQDHFFAMLNLAKDRIADL 230 + ++ ++E+Q + + + S++ +NLAK I + Sbjct: 208 GINNNVSMIEMQSLKTTTQNKDSIIENANEISKNDLLEAINLAKKHIETM 257 >gi|15887437|ref|NP_353118.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium tumefaciens str. C58] gi|187470963|sp|A9CKQ7|PNP_AGRT5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|15154950|gb|AAK85903.1| polyribonucleotide nucleotidyltransferase [Agrobacterium tumefaciens str. C58] Length = 713 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I + GS L G+T + ATL ++ G Sbjct: 316 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ L A+ ++ + Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANA 541 Query: 238 ISN 240 I+ Sbjct: 542 ITE 544 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 76/229 (33%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T +L T + + + + T G + Sbjct: 14 RPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + Q+++ VIQ D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G V G + G +++ E Sbjct: 126 PDVLSMVAASAALTLSGI-------------PFMGPVGGARVGYINGEYVLNPHLDEMDE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E +++ + +I Sbjct: 173 SVLDLVVAGTQDAVLMV---ESEAKELNEEIMLGAVMFGHKGFQPVIDA 218 >gi|197336129|ref|YP_002155245.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11] gi|226704830|sp|B5FA83|PNP_VIBFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|197317619|gb|ACH67066.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11] Length = 709 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 98/247 (39%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+++ +R + + V GS L G+T L TATL + I ++ G Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R +++V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAVMPSIEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ LN A+ ++K+ Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNEG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILKV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT + + + E VP + + T G +P Sbjct: 17 VTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I I + Sbjct: 76 --GGFFKRE---GRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVSINPEVNPDMI 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E +D Sbjct: 131 TMIGTSAALAIAGI-------------PFNGPIGAARVGHINGELVLNPSNTELENSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+ G ++ V+ +E +++ + + D+ +IK + Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLTEEEMLSAVVFGHDQQQVVIKAINE 222 >gi|282855612|ref|ZP_06264926.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens W5455] gi|282586542|gb|EFB91796.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens W5455] Length = 751 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 28/244 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R GR +++R IS V GS L G+T L TL ++++ ++ + Sbjct: 311 IRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGEDDQIIDGLKLDE 370 Query: 56 -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y P S G R+ G + RAL +V + + Sbjct: 371 PNKRFLLHYNFPPYSVGEIKPMRGPGRREIGHG----ALAERALAPLVPGEEEFPYVVRV 426 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 D+++++G + A+I G +++ M K HVA I+ G++ Sbjct: 427 VSDILESNGSSSQASICGGSLSMMAAGVPM-------------KKHVAGIAMGLIKEGDD 473 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G + +Q + +++ L A + Sbjct: 474 MVILTDIQGLEDHYGDMDFKVAGTRDG-VTALQMDNKAGGITREILSRALMQAHQARMQI 532 Query: 231 IKLQ 234 + Sbjct: 533 LDAM 536 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 28/223 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 V+K A + + G+T +LTTA + + G +P G +K Sbjct: 21 VAKQANAAVVASHGETTILTTACMSDKPRVGLDFFPLLVDFEERYYAAGKIP---GGYIK 77 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR + R++ R++RS+ D S ++ + AI A + Sbjct: 78 RE---GRPSQTAILSARVVDRSIRSLFDDSMRNDVHVVATVLAVDQKNPANILAINAASM 134 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMT 194 AL G V A+ G + G +V+ ED + + V Sbjct: 135 AL-------------TISDIPWSGPVGAVRMGCIDGELVVNPT--EDRMAESTLDLTVAG 179 Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +G I V+ A ++ L A+D I ++ Q V Sbjct: 180 HAGGITMVEAGAREVP--EELLVNALQTAQDEIKKIVAFQLQV 220 >gi|260550547|ref|ZP_05824757.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp. RUH2624] gi|260406462|gb|EEW99944.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp. RUH2624] Length = 697 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I + V A GS L G+T L T TL + TK Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA ++L D LK VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGDRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538 Query: 234 QKDVIS 239 VIS Sbjct: 539 MNKVIS 544 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 81/237 (34%), Gaps = 43/237 (18%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++ L V++ A + L+ G +L + K +T Y + G Sbjct: 17 QVVLETGRVARQAN-TVLITMGGVTVLVAVVAQSKA---KAGQDFFPLTVNYQEKQYAAG 72 Query: 72 NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123 + G++ GR+ E I R+I R +R + Q+ ++AD Sbjct: 73 ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMEAD- 128 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AA+ G AL +G + A G++ G +++ ++ + + Sbjct: 129 ---IAAMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMA 172 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 D+D T++ ++ +E S+D + +A I + Sbjct: 173 QSDLDLVVAGTEAAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226 >gi|116330633|ref|YP_800351.1| polynucleotide phosphorylase/polyadenylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281612|sp|Q04U27|PNP_LEPBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116124322|gb|ABJ75593.1| Polyribonucleotide nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 696 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----N 72 T +K A G+ + K G+ LL T + +T EY S G Sbjct: 18 TGNWAKQAHGAVVYKSGNLVLLATVCAADDA---KEGQDFFPLTCEYTEKLYSVGRFPGG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA--AI 130 KREA + I R+I R +R + Q+ + V+ ADG A A+ Sbjct: 75 YFKREA---KPPEHEILISRIIDRPIRPLFPEGYFCEVQLQV--QVLSADGDVSVAGHAL 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL G +A G + G I++ E D+D Sbjct: 130 NAASVAL-------------TISDIPFNGPIAGARIGRINGELILNPTTKEIVNSDLDLV 176 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + HIV ++G A+ S + + L A+ IA+ + LQ++ Sbjct: 177 VAGTKT-HIVMIEGEAKE--LSNEEMLSALRFAQKHIAEFVTLQEE 219 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 27/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R GR+ +++R IS+ GS + G T L TL + K Sbjct: 313 VRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDNQRYETLEGQKE 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G V+R + GR R + RAL+ V+ S I + Sbjct: 373 KSFMLHYNFPAFSVGE-VRRSSGPGR---REIGHGNLAERALKLVLPKSEEFPYVIRVVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A++ +AL +KG V+ I+ G+ Sbjct: 429 EILESNGSSSMASVCSGSLALMAAGV-------------PIKGSVSGIAMGLFSDSSGKY 475 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S D ++ A+ ++ Sbjct: 476 AVLSDIAGLEDHFGDMDCKIAGTRKG-ITAFQMDLKVTGVSFDVLESVFEQAQRGRFHIL 534 Query: 232 KLQKDVISN 240 + + IS Sbjct: 535 DIMEKHISK 543 >gi|257096716|sp|B0RRB8|PNP_XANCB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 704 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS+ V GS L G+T + TL + + G Sbjct: 315 VRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEDDRFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536 Query: 233 LQKDVISNE 241 ++ Sbjct: 537 EMSKALTTP 545 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL TA T E + + G +P Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G G I++ E ++ Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTITELKDSQLE 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + ++ +E A S++ + + +I + + Sbjct: 176 LVVAGTANAVLMV---ESEAALLSEEVMLGAVTFGHREMQKVINIINE 220 >gi|83941735|ref|ZP_00954197.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36] gi|83847555|gb|EAP85430.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36] Length = 711 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ +++R+I + GS L G+T L TL + Sbjct: 318 RIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ S I + + Sbjct: 378 NFMLHYNFPPYSVGEVGR----VGGPGRREIGHGKLAWRALQAVLPASTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + +L+ S + + D+ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A + + L AK ++ Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALAQAKAGRVHILGEMNKA 544 Query: 238 ISN 240 IS Sbjct: 545 ISG 547 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L V++ A+GS + G+T ++ T + +T Y + Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 72 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 73 VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDST 184 A+ A AL +G + A G G +++ +D Sbjct: 128 MVAMIAASAALTISGA-------------PFRGPIGACRVGFEDGDYVLNPTVDDMQDLR 174 Query: 185 IDVD--ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ D + V+ + V + S E S++ + A ++I +I L Sbjct: 175 LNPDQRLDLVVAGTKEAVMMVES-EAYELSEEEMLGAVKFAHEQIQPVIDL 224 >gi|312901916|ref|ZP_07761179.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0470] gi|311290983|gb|EFQ69539.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0470] Length = 704 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 93/232 (40%), Gaps = 26/232 (11%) Query: 12 REISLT-RRVSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + +++K A G+ LV++GDT +L A+ E K V + + G +P Sbjct: 14 RPLEVKSAQLAKKANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + QI ++ D Sbjct: 74 ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S++ L D I +L+ Q+++++ Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223 >gi|148380367|ref|YP_001254908.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A str. ATCC 3502] gi|153933900|ref|YP_001384587.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A str. ATCC 19397] gi|153934955|ref|YP_001388103.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A str. Hall] gi|187610255|sp|A7FVY7|PNP_CLOB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610257|sp|A5I4I7|PNP_CLOBH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148289851|emb|CAL83959.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152929944|gb|ABS35444.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A str. ATCC 19397] gi|152930869|gb|ABS36368.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A str. Hall] Length = 702 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R GR +++R IS + G+ L G T ++T AT + ++ I + Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ + I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSQSEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + + I D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S L AK ++ K+ Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539 Query: 238 ISNE 241 I Sbjct: 540 IPEP 543 Score = 81.7 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 88/236 (37%), Gaps = 31/236 (13%) Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64 R++ + + A + +GDT ++ A+ E + + + ++ G Sbjct: 12 RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G +KRE G+ +S R I R LR + QI+ ++ D Sbjct: 70 KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI G+ +AL S VAA+S G++ G I++ + Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T ++ V+ + ++ ++ + + +++ Q++ ++ Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIVAFQEEAVAK 223 >gi|310766258|gb|ADP11208.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617] Length = 710 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 NFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKGDAFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDDNNFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISGP 544 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 24/187 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G L +++ E +D Sbjct: 130 AMIGASAALALSGL-------------PFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 176 Query: 189 ANFVMTD 195 T Sbjct: 177 LVVAGTK 183 >gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis] gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis] Length = 211 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 77/215 (35%), Gaps = 29/215 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R ++ +R V A GS GDT +L + N + I Sbjct: 5 RDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPKPGTKKNENPEKACIEV 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + +G+ G +E + ++ R L+++ L+ + + V+ Sbjct: 65 IWK-------------PKTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTSVIVQVVHD 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG T AI A AL D M+ + VA C GY I+D E Sbjct: 112 DGALLTCAINAACAALVDAGIPMKHLA------------VAICCCLSESGYVILDPTKLE 159 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSA---ERATFSQ 213 + + V +S H V +Q + E Sbjct: 160 EQKMKGFTYLVFPNSVHSV-LQKESVLVEGEPMDH 193 >gi|126726062|ref|ZP_01741904.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales bacterium HTCC2150] gi|126705266|gb|EBA04357.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales bacterium HTCC2150] Length = 710 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I + GS L G+T L TL + + HG Sbjct: 318 RIDGRDTSTIRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALHGTYKS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RAL++V+ + I + + Sbjct: 378 NFMLHYNFPPYSVGEVGRFGFTGRREIGHG----KLAWRALQAVLPAATDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +A+ D ++ + +L+ S + + D+ Sbjct: 434 ITESNGSSSMASVCGGSLAMMDAGVPLKSAVAGVAMGLILED---DGSYAI-----LSDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPEIMEKALAQAKDGRMHILGEMNKA 544 Query: 238 ISN 240 +S Sbjct: 545 LSG 547 Score = 71.7 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + +G G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKAQKPGQDFFPLTVHYGEKYYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVDGF--KNEVLLICTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182 A+ A AL G +AA G G +++ + Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAAARVGFTEGEYVLNPSIDDMHKLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D + V+ + V + S E S+ + A D +I L Sbjct: 175 DNPDQRLDLVVAGTKDAVMMVES-EAYELSEAEMLGAVRFAHDSFQPVIDL 224 >gi|289676030|ref|ZP_06496920.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae pv. syringae FF5] Length = 472 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 87 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 146 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R++++++ + + I + + Sbjct: 147 PFMLHYNFPPFSVGECGRMGGAGRREIGHG----RLARRSVQAMLPGADVFPYTIRVVSE 202 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D M+ + V +G AI + D+ Sbjct: 203 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 253 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G + +Q + +++ L A + Sbjct: 254 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 301 >gi|219849396|ref|YP_002463829.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus aggregans DSM 9485] gi|257096672|sp|B8G3Z1|PNP_CHLAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219543655|gb|ACL25393.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aggregans DSM 9485] Length = 755 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 100/249 (40%), Gaps = 29/249 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R+ GR +++R IS+ V GS L G T +LT ATL E+KV T Sbjct: 320 IRVDGRALDEIRPISIEVGVVPRVHGSALFTRGQTQVLTIATLGSPGDEQKVDDLGIETT 379 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P STG + R G + R+L +V+ I + Sbjct: 380 KRYIH-HYNFPPFSTGEIRRLGTPRRRDIGHG----ALAERSLYAVLPSEEEFPYTIRLV 434 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V+ ++G + A++ G+ ++L D +K VA ++ G++ G Sbjct: 435 SEVLSSNGSSSMASVCGSSLSLMDAGV-------------PIKAPVAGVAMGLITGEDGR 481 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED+ D+D T +G + +Q + + + A+ + Sbjct: 482 WRVLTDIQGIEDALGDMDFKVAGTANG-VTGLQMDIKTTGITYEIMRQAFAQARAGRLFI 540 Query: 231 IKLQKDVIS 239 ++ VIS Sbjct: 541 LEKMNAVIS 549 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 31/234 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R ++L ++ A+G+ + ++GDT LL T E + + G + Sbjct: 16 RTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVDYEEKMYAVGKI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ--ADGG 124 P N KRE GR + I R+ R LR + Q+II I D G Sbjct: 76 P---ANFFKRE---GRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDMENDPG 129 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 L + + G V A+ G L G +V+ GE Sbjct: 130 P---------------LAIIAASAALAISDIPFAGPVGAVQMGHLDGKLVVNPKMGEIEK 174 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 +D T ++ G+ E S+D + + +LQ+ ++ Sbjct: 175 SRLDLVVAGTKDAVLMVEAGAYE---LSEDEMLQAVIEGHAVCKQICELQEQLV 225 >gi|91069865|gb|ABE10796.1| polyribonucleotide nucleotidyltransferase [uncultured Prochlorococcus marinus clone ASNC1363] Length = 721 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 36/238 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A GS +++ GDT LL TAT K + + +Y Sbjct: 13 REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTLK----KETSDFLPLICDYEEKLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122 R G ++RE GR R+ I R+I R +R + + QI+ C + AD Sbjct: 69 GRIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPVWMRDEIQIVASCLSLDERVPAD 125 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 A+TGA +A G +AA+ G++ I++ Y E Sbjct: 126 ----VLAVTGASIA-------------TLLGEIPFYGPMAAVRVGLIGDDFILNPSYREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + + +LIK Q+D++ + Sbjct: 169 EKGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLKD 223 Score = 91.3 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 33/252 (13%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR +++R+I+ + + K GS L + G T +L+T TL P + + Sbjct: 323 RVDGRDLDEVRKITASASILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380 Query: 61 AE------YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 E Y P S G R R G R + RA+ V+ + Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRT-----PGRREIGHGALAERAIIPVLPGKETFPYVLR 435 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171 + +V+ ++G T ++ G+ ++L D LK V+ + G++ Sbjct: 436 VVSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVSGTAMGLIKEGK 482 Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 + D+ ED D+D TD G I +Q + + A+ Sbjct: 483 EVRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVSIISDAIKKARPARLH 541 Query: 230 LIKLQKDVISNE 241 +++ ++ I Sbjct: 542 ILEKMQEAIDKP 553 >gi|59711097|ref|YP_203873.1| polynucleotide phosphorylase/polyadenylase [Vibrio fischeri ES114] gi|75354543|sp|Q5E7L1|PNP_VIBF1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|59479198|gb|AAW84985.1| polynucleotide phosphorylase (PNPase) [Vibrio fischeri ES114] Length = 709 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 98/247 (39%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+++ +R + + V GS L G+T L TATL + I ++ G Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R +++V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAVMPSIEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ LN A+ ++K+ Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNEG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILKV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT + + + E VP + + T G +P Sbjct: 17 VTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I I + Sbjct: 76 --GGFFKRE---GRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVSINPEVNPDMI 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E +D Sbjct: 131 TMIGTSAALAIAGI-------------PFNGPIGAARVGHINGELVLNPSNTELENSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T+ G ++ V+ +E +++ + + + Q+ V+ N + Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLTEEEMLSAVVFGHE--------QQQVVINAI 220 >gi|254450859|ref|ZP_05064296.1| polyribonucleotide nucleotidyltransferase [Octadecabacter antarcticus 238] gi|198265265|gb|EDY89535.1| polyribonucleotide nucleotidyltransferase [Octadecabacter antarcticus 238] Length = 710 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 96/248 (38%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++REI + GS L G+T L TL + ++ G + Sbjct: 318 RIDGRKTDEIREIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDSLQGMYKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLIMEDSGEYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + L AK ++ Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPAIMKEALAQAKVGRIHILG 539 Query: 233 LQKDVISN 240 +S+ Sbjct: 540 EMNKAMSS 547 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 82/233 (35%), Gaps = 37/233 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+G+ + +G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLTVHYNEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVDGF--KNEVLVICTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG------ 180 A+ A AL G +AA G G I++ + Sbjct: 128 MVAMIAASAALTISGA-------------PFMGPIAACRVGFEDGDYILNPEMDDMHKLR 174 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 E+ +D T ++ V+ +E S++ + A +I +I + Sbjct: 175 ENPDQRLDLVVAGTKDA-VMMVE--SEAYELSEEEMLGAVEFAHAQIQPVIDM 224 >gi|319405094|emb|CBI78698.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. AR 15-3] Length = 733 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 86/242 (35%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R I + GS L G+T L ATL ++ G Sbjct: 317 RIDGRNLSDVRPIQSEVGLFPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ I + Sbjct: 377 TFLLHYNFPPFSVGEIGR----IGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEQFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ L AKD ++ Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKA 542 Query: 238 IS 239 ++ Sbjct: 543 LA 544 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 35/233 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T T + + + G + Sbjct: 14 RPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEKNYAVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE R I R+I R +R + Q+I+ VIQ D Sbjct: 74 P---GGYFKRE---NRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVS--VIQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI + AL G +AA G G I++ + E Sbjct: 126 PDILAIIASSAALTLSGI-------------PFMGPIAAARIGYCNGQYILNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233 +D T++ ++ +E +D + + I +IKL Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAHELPEDVMLNAVMFGQKSFQPVINAIIKL 222 >gi|161079377|ref|NP_001097990.1| CG11337, isoform C [Drosophila melanogaster] gi|158030458|gb|ABW08815.1| CG11337, isoform C [Drosophila melanogaster] Length = 721 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 17/250 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR +Q+R IS + K GS L + G T + T +L+ + ++ Sbjct: 304 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 363 Query: 57 GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 G + A Y P +TG + G G R + R+L + Sbjct: 364 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRREMGHGALAERSLLPTLPND--YPFT 417 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + +V++++G + A++ G +AL D + + + V K + + Sbjct: 418 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 476 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G +Q + L A D ++++ Sbjct: 477 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 535 Query: 232 KLQKDVISNE 241 + + I Sbjct: 536 DIMSEAIREP 545 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 22/177 (12%) Query: 66 LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 + S+G R+ + G +EI R+I R+LR + Q++ + + A Sbjct: 52 MTFSSG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVH 110 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AI A +AL G + A+ G+ G +++ E Sbjct: 111 SPDVLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQ 157 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236 T +D T +V ++G + Q + A+ I ++ +LQK Sbjct: 158 TSQLDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 212 >gi|215277019|ref|NP_001135843.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Rattus norvegicus] gi|149044835|gb|EDL98021.1| polyribonucleotide nucleotidyltransferase 1 [Rattus norvegicus] Length = 784 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R IS + K GS L + G T +L T T + +++ I Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL V+ I Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEK---GEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T+ G I +Q + + A ++++ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPVKIIMEAIQQATVAKREILQ 587 Query: 233 LQKDVISNE 241 IS Sbjct: 588 TMSKTISKP 596 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+G +V+ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGCAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE S + R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGS---SDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA AL G V A+ GM+ G +V+ E S+ Sbjct: 166 DILAINGASAALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|29377522|ref|NP_816676.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis V583] gi|227554487|ref|ZP_03984534.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis HH22] gi|257088180|ref|ZP_05582541.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis D6] gi|75541451|sp|Q82ZJ2|PNP_ENTFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29344989|gb|AAO82746.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis V583] gi|227176397|gb|EEI57369.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis HH22] gi|256996210|gb|EEU83512.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis D6] gi|315027681|gb|EFT39613.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX2137] gi|315573355|gb|EFU85546.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0309B] gi|315581213|gb|EFU93404.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0309A] Length = 704 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L A+ E K V + + G +P Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + QI ++ D Sbjct: 74 ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S++ L D I +L+ Q+++++ Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223 >gi|307292085|ref|ZP_07571952.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0411] gi|306496867|gb|EFM66417.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0411] Length = 704 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+ A + V + + G +P Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKAAKDVDFFPLTVNYEEKMYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + QI ++ D Sbjct: 74 ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S++ L D I +L+ Q+++++ Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223 >gi|50083658|ref|YP_045168.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ADP1] gi|81393846|sp|Q6FF12|PNP_ACIAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49529634|emb|CAG67346.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Acinetobacter sp. ADP1] Length = 697 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I + V A GS L G+T L T TL + TK Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAYAGRMHILNE 538 Query: 234 QKDVIS 239 VIS Sbjct: 539 MNKVIS 544 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 79/237 (33%), Gaps = 43/237 (18%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++ L V++ A + LV G +L P +T Y + G Sbjct: 17 QVVLETGRVARQAN-TVLVTMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 72 Query: 72 NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123 + G++ GR+ E I R+I R +R + QI + AD Sbjct: 73 ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQITATVVSSDKTMDAD- 128 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AA+ GA AL +G + G++ G +++ ++ + + Sbjct: 129 ---IAAMLGASAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLA 172 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 D+D T+S ++ +E S+D + +A I + Sbjct: 173 QSDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAA 226 >gi|257080529|ref|ZP_05574890.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis E1Sol] gi|256988559|gb|EEU75861.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis E1Sol] Length = 704 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L A+ E K V + + G +P Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + QI + D Sbjct: 74 ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S++ L D I +L+ Q+++++ Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223 >gi|329295924|ref|ZP_08253260.1| polynucleotide phosphorylase/polyadenylase [Plautia stali symbiont] Length = 710 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L ATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVAATLGTARDAQNLDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 SFLFHYNFPPFSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKQDAFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKA---KAGQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVITTVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTADEIKQSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T + ++ +E ++D + Sbjct: 177 LVVAGTQNAVLIV---ESEADILTEDQMLGAV 205 >gi|255974311|ref|ZP_05424897.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T2] gi|255967183|gb|EET97805.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T2] Length = 704 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L A+ E K V + + G +P Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + QI ++ D Sbjct: 74 ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S++ L D I +L+ Q+++++ Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223 >gi|189465341|ref|ZP_03014126.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM 17393] gi|189437615|gb|EDV06600.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM 17393] Length = 714 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 30/235 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ +++R I GS + G+T L T TL K+ I + Sbjct: 319 RLDGRKTDEIRPIWSEISYLPGPHGSAIFTRGETQSLATVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKQPVSGIAMGLIKNPGEDKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T +G I Q + S D LN AK+ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKNG-ITATQMDIKVDGLSFDILERALNQAKEG 533 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 88/236 (37%), Gaps = 27/236 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ R G KRE GR R++ RALR + + ++ ++ + Sbjct: 66 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILYS 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V + D L + + G ++ + + G +++ + Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFD 169 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + D+D T +I+ V+G E + S+ + A + I + QK+ Sbjct: 170 QLEKADMDLMVGATYE-NIMMVEG--EMSEVSELDLLNAMKAAHEAIKVQCQAQKE 222 >gi|209551633|ref|YP_002283550.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226702681|sp|B5ZW24|PNP_RHILW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|209537389|gb|ACI57324.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 712 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I + GS L G+T + ATL ++ G Sbjct: 316 RIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ L A+ A ++ Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMAKA 541 Query: 238 ISN 240 I+ Sbjct: 542 ITE 544 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 27/220 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+++ + Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ A AL G V G + G +++ E Sbjct: 128 VLSMVAASAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESS 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +D T ++ +E +++ + Sbjct: 175 LDLVVAGTYDAVLMV---ESEAKELNEEVMLGAVMFGHKG 211 >gi|116328709|ref|YP_798429.1| polynucleotide phosphorylase/polyadenylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122283506|sp|Q04ZJ9|PNP_LEPBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116121453|gb|ABJ79496.1| Polyribonucleotide nucleotidyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 696 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 30/226 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----N 72 T +K A G+ + K G+ LL T + +T EY S G Sbjct: 18 TGNWAKQAHGAVVYKSGNLVLLATVCAADDA---KEGQDFFPLTCEYTEKLYSVGRFPGG 74 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA--AI 130 KREA + I R+I R +R + Q+ + V+ ADG A A+ Sbjct: 75 YFKREA---KPPEHEILISRIIDRPIRPLFPEGYFCEVQLQV--QVLSADGDVSVAGHAL 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL G +A G + G I++ E D+D Sbjct: 130 NAASVAL-------------TISDIPFNGPIAGARIGRINGELILNPTTKEIVNSDLDLV 176 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + HIV ++G A+ S + + L A+ IA+ + LQ++ Sbjct: 177 VAGTKT-HIVMIEGEAKE--LSNEEMLSALRFAQKHIAEFVTLQEE 219 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 27/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R GR+ +++R IS+ GS + G T L TL + K Sbjct: 313 VRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDNQRYETLEGQKE 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G V+R + GR R + RAL+ V+ S I + Sbjct: 373 KSFMLHYNFPAFSVGE-VRRSSGPGR---REIGHGNLAERALKLVLPKSEEFPYVIRVVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A++ +AL +KG VA I+ G+ Sbjct: 429 EILESNGSSSMASVCSGSLALMAAGV-------------PIKGSVAGIAMGLFSDSSGKY 475 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S D ++ A+ ++ Sbjct: 476 AVLSDIAGLEDHFGDMDCKIAGTRKG-ITAFQMDLKVTGVSFDVLESVFEQAQRGRFHIL 534 Query: 232 KLQKDVISN 240 + + IS Sbjct: 535 DIMEKHISK 543 >gi|227517327|ref|ZP_03947376.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis TX0104] gi|256960415|ref|ZP_05564586.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis Merz96] gi|257417198|ref|ZP_05594192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis AR01/DG] gi|257420479|ref|ZP_05597469.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis X98] gi|293383916|ref|ZP_06629818.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis R712] gi|293388310|ref|ZP_06632824.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis S613] gi|300861666|ref|ZP_07107750.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11] gi|307286415|ref|ZP_07566521.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0109] gi|312906743|ref|ZP_07765743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DAPTO 512] gi|312910719|ref|ZP_07769558.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DAPTO 516] gi|227075197|gb|EEI13160.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis TX0104] gi|256950911|gb|EEU67543.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis Merz96] gi|257159026|gb|EEU88986.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis ARO1/DG] gi|257162303|gb|EEU92263.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis X98] gi|291078743|gb|EFE16107.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis R712] gi|291082320|gb|EFE19283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis S613] gi|295114393|emb|CBL33030.1| polyribonucleotide nucleotidyltransferase [Enterococcus sp. 7L76] gi|300849127|gb|EFK76880.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11] gi|306502428|gb|EFM71701.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0109] gi|310627391|gb|EFQ10674.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DAPTO 512] gi|311288982|gb|EFQ67538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DAPTO 516] gi|315143300|gb|EFT87316.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX2141] gi|315148895|gb|EFT92911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX4244] gi|315154770|gb|EFT98786.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0043] gi|315164498|gb|EFU08515.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX1302] Length = 704 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L A+ E K V + + G +P Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + QI + D Sbjct: 74 ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S++ L D I +L+ Q+++++ Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223 >gi|54650534|gb|AAV36846.1| RH44882p [Drosophila melanogaster] Length = 771 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 17/250 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR +Q+R IS + K GS L + G T + T +L+ + ++ Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 413 Query: 57 GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 G + A Y P +TG + G G R + R+L + Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRREMGHGALAERSLLPTLPND--YPFT 467 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + +V++++G + A++ G +AL D + + + V K + + Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 526 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G +Q + L A D ++++ Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 585 Query: 232 KLQKDVISNE 241 + + I Sbjct: 586 DIMSEAIREP 595 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 30/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPR 68 R ++ + ++++A G+ + + GDT ++ TA V N G+ + +Y + Sbjct: 50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTA-----VAKAKPNPGQGFMPLVVDYRLKNA 104 Query: 69 STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 ++G R+ + G +EI R+I R+LR + Q++ + + A Sbjct: 105 ASG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPD 163 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A +AL G + A+ G+ G +++ E T Sbjct: 164 VLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQ 210 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236 +D T +V ++G + Q + A+ I ++ +LQK Sbjct: 211 LDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262 >gi|42632644|gb|AAS22253.1| polynucleotide phosphorylase [Aster yellows witches'-broom phytoplasma] Length = 716 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R R+ ++R + + A GS L G T L TL E K+ + + ++ Sbjct: 325 IRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGCLSESKIIDGLSDEQN 384 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A S R+ G + +A+ V+ I + Sbjct: 385 KRFMLHYNFPPFSVGAVGRYTAPSRREIGHGT----LAEKAISQVLPEEKDFPYTIRVVS 440 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A + + +AL LK VA IS G++ Sbjct: 441 EILESNGSSSQATVCSSSLAL-------------MASGVPLKKAVAGISVGLVFDQETNK 487 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G I +Q + AK + Sbjct: 488 YVILSDIQGLEDHVGDMDLKIAGTNKG-ITALQMDLKIQGIPFKILQEAFLQAKKGRLHI 546 Query: 231 IKLQKDVISNE 241 ++ IS Sbjct: 547 LEQMNQTISQP 557 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 22/217 (10%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 ++ + S LV++ DT +LTT K N +T Y + G Sbjct: 22 YARNVDSSILVRYQDTVVLTTMVFSRK----PNNLDFLPLTVIYQEKLYAAGKIPGSFLT 77 Query: 80 SGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 R G EI R+I R+LR + Q+I + D Sbjct: 78 PRRGGSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPD-------------FK 124 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 + + + ++ + G + I++ + + + T Sbjct: 125 SELASMLGSSLSLLISEIPFFEAISGVYVGKINNEFIINPTLQQLANSTLHLIVAGTKH- 183 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ++ ++ A S+ F +N A I L Q Sbjct: 184 NVTMIE--AHANEVSEQDFLEAINFAHQYIKKLCLFQ 218 >gi|229547506|ref|ZP_04436231.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis TX1322] gi|229548082|ref|ZP_04436807.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis ATCC 29200] gi|255970737|ref|ZP_05421323.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T1] gi|256618176|ref|ZP_05475022.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis ATCC 4200] gi|256761105|ref|ZP_05501685.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T3] gi|256854742|ref|ZP_05560106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T8] gi|256958346|ref|ZP_05562517.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DS5] gi|256962906|ref|ZP_05567077.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis HIP11704] gi|257078344|ref|ZP_05572705.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis JH1] gi|257091307|ref|ZP_05585668.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis CH188] gi|294780196|ref|ZP_06745568.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis PC1.1] gi|307270429|ref|ZP_07551730.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX4248] gi|307273930|ref|ZP_07555142.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0855] gi|307276709|ref|ZP_07557826.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX2134] gi|312905366|ref|ZP_07764481.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0635] gi|312953165|ref|ZP_07772012.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0102] gi|229306768|gb|EEN72764.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis ATCC 29200] gi|229307348|gb|EEN73335.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis TX1322] gi|255961755|gb|EET94231.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T1] gi|256597703|gb|EEU16879.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis ATCC 4200] gi|256682356|gb|EEU22051.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T3] gi|256710302|gb|EEU25346.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T8] gi|256948842|gb|EEU65474.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis DS5] gi|256953402|gb|EEU70034.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis HIP11704] gi|256986374|gb|EEU73676.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis JH1] gi|257000119|gb|EEU86639.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis CH188] gi|294452739|gb|EFG21169.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis PC1.1] gi|306506608|gb|EFM75761.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX2134] gi|306509409|gb|EFM78467.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0855] gi|306513207|gb|EFM81838.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX4248] gi|310628908|gb|EFQ12191.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0102] gi|310631390|gb|EFQ14673.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0635] gi|315031249|gb|EFT43181.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0017] gi|315036532|gb|EFT48464.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0027] gi|315152914|gb|EFT96930.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0031] gi|315157487|gb|EFU01504.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0312] gi|315162544|gb|EFU06561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0645] gi|315167175|gb|EFU11192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX1341] gi|315171031|gb|EFU15048.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX1342] gi|315173459|gb|EFU17476.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX1346] gi|315578552|gb|EFU90743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0630] gi|323478998|gb|ADX78437.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis 62] gi|327536187|gb|AEA95021.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis OG1RF] gi|329571128|gb|EGG52834.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX1467] Length = 704 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L A+ E K V + + G +P Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + QI ++ D Sbjct: 74 ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S++ L D I +L+ Q+++++ Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223 >gi|117926996|ref|YP_867613.1| polynucleotide phosphorylase/polyadenylase [Magnetococcus sp. MC-1] gi|187610282|sp|A0LE14|PNP_MAGSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117610752|gb|ABK46207.1| Polyribonucleotide nucleotidyltransferase [Magnetococcus sp. MC-1] Length = 701 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I+ + G+ L G+T + T TL +E++ + Sbjct: 318 RVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIATVTLGTSRDEQIVETLSGEYRD 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + G G R ++ RAL ++V + + + I + Sbjct: 378 RFYLNYTFPPYCVGETGR----MGAPGRREIGHGKLATRALTAIVPSAEVFPYTLRITSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + GA +A+ D ++ + V +G A+ + D+ Sbjct: 434 ITESNGSSSMATVCGAVLAMQDAGVPIKAPVAGIAMGLVKEGDAYAV---------LSDI 484 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D G I +Q + +++ L A+ Sbjct: 485 LGDEDHLGDMDFKVAGNADG-ITALQMDIKITGITREIMAKALEQARAG 532 Score = 81.7 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 29/233 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 I+L V++ A G+ +V +GDT +L TA ++ + + + G +P Sbjct: 16 ITLETGRVARQANGAVMVTYGDTVVLVTAVAETSMRAGQDFFPLSVHYQEKFWAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE R R R+I R +R + + Q++ D + A Sbjct: 75 --GGFIKRET---RPSEREVLTSRLIDRPIRPLFPKGFMNETQVVAQVLSYDPDYPSDIA 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL +G + G + G P+++ + + +D Sbjct: 130 ALIGCSAALA-------------LSGVPFEGPIGGARVGFIDGKPVLNPTVDQLAASRLD 176 Query: 189 ANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T S +VE +E S+D + A + +I +++++ Sbjct: 177 LVVAGTRSAVTMVE----SEVDFLSEDEMLDCVMFAHESFQPVITAIEELVAE 225 >gi|304404299|ref|ZP_07385961.1| polyribonucleotide nucleotidyltransferase [Paenibacillus curdlanolyticus YK9] gi|304347277|gb|EFM13109.1| polyribonucleotide nucleotidyltransferase [Paenibacillus curdlanolyticus YK9] Length = 701 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR N++R I + GS L G T L T A + ++ I + Sbjct: 313 VRPDGRGLNEIRPIDCDVALLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGISPEES 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G G R + RAL V+ + I + Sbjct: 373 KRFMHHYNFPPFSVGEAR----PLRPPGRREIGHGALGERALSKVIPPESEFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172 + ++++G T A+I + +A+ D +K VA I+ G++ G Sbjct: 429 ECLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKDGEHFS 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + + L AK+ ++ Sbjct: 476 ILSDIQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKIEGIDRAILTQALEQAKEGRMHILG 534 Query: 233 LQKDVISNE 241 +V+ Sbjct: 535 KMLEVMGEP 543 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 80/225 (35%), Gaps = 26/225 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R + L ++K A + V++G+T +L T T + + + + G +P Sbjct: 12 RPLVLETGRLAKQANAAVTVRYGETVVLCTVTASSEPKDLDFFPLTVNYEEKLYAVGKIP 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+ R +R + QI+ + D Sbjct: 72 ---GGFIKRE---GRPSEKAILSSRLTDRPIRPLFPDGFRNDVQIVNLVMSVDQDCSPEI 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G AL G + + G + G +++ +++ D+ Sbjct: 126 AAMIGTSAALS-------------ISDVPFNGPIGGVVVGRIDGQFVINPTVEQEAQSDI 172 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 V I+ V+ AE + + D I +++K Sbjct: 173 -FVVVAGTKDAIMMVE--AEADEVPESVMLEAIMFGHDEIKNIVK 214 >gi|189220135|ref|YP_001940775.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Methylacidiphilum infernorum V4] gi|189186993|gb|ACD84178.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Methylacidiphilum infernorum V4] Length = 669 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 89/253 (35%), Gaps = 33/253 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R GR +R I++ V + GS L G+T L ATL +++ + + Sbjct: 275 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQS 334 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + S R+ G + R+L V+ I + Sbjct: 335 KRFLLHYFFPPFSVGEVGRITGQSRREIGHG----ALAERSLLPVIPSETDFPYAIRVSS 390 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 ++++++G T A + G +AL D LK VA IS G++ G Sbjct: 391 EILESNGSTSMATVCGGSLALMDAGV-------------PLKTSVAGISVGLVKGKEEDF 437 Query: 172 -----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I Q + D + ++ Sbjct: 438 DWSRYCLLTDILGLEDHYGDMDFKIAGTRKG-ITGFQLDLKLRGIPLDVMAKAIFQSQKA 496 Query: 227 IADLIKLQKDVIS 239 ++ VI+ Sbjct: 497 RMVILDCMDKVIN 509 Score = 95.2 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 79/208 (37%), Gaps = 30/208 (14%) Query: 40 TATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR 96 ++ E ++ A G P G ++E GR + RMI R Sbjct: 4 AVSVTELKEDQDFLPLQVEYREKAAAAGRFP---GGYFRKE---GRPTDKEILTSRMIDR 57 Query: 97 ALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154 LR + QI+ ++ ADG AI GA AL Sbjct: 58 PLRPLFPKGYFYETQIL--GTLLSADGQNDPDVMAINGASAAL-------------MVSD 102 Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 G V A+ G + G I++ + E D+D +V ++ + + ++GSA F ++ Sbjct: 103 IPFYGPVGAVRIGQIDGRWIINPTHREREISDIDLVYVGSEH-YPLMIEGSARE--FPEE 159 Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNEV 242 F L A + ++I QK+ ++ +V Sbjct: 160 EFVKALEFAHQHVQEVIAAQKE-LAEKV 186 >gi|24651641|ref|NP_651867.2| CG11337, isoform A [Drosophila melanogaster] gi|24651643|ref|NP_733429.1| CG11337, isoform B [Drosophila melanogaster] gi|281362905|ref|NP_001163783.1| CG11337, isoform D [Drosophila melanogaster] gi|23172770|gb|AAF57151.2| CG11337, isoform A [Drosophila melanogaster] gi|23172771|gb|AAN14273.1| CG11337, isoform B [Drosophila melanogaster] gi|272477256|gb|ACZ95076.1| CG11337, isoform D [Drosophila melanogaster] Length = 771 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 17/250 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR +Q+R IS + K GS L + G T + T +L+ + ++ Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 413 Query: 57 GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 G + A Y P +TG + G G R + R+L + Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRREMGHGALAERSLLPTLPND--YPFT 467 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + +V++++G + A++ G +AL D + + + V K + + Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 526 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G +Q + L A D ++++ Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 585 Query: 232 KLQKDVISNE 241 + + I Sbjct: 586 DIMSEAIREP 595 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 30/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPR 68 R ++ + ++++A G+ + + GDT ++ TA V N G+ + +Y + Sbjct: 50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTA-----VAKAKPNPGQGFMPLVVDYRLKNA 104 Query: 69 STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 ++G R+ + G +EI R+I R+LR + Q++ + + A Sbjct: 105 ASG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPD 163 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A +AL G + A+ G+ G +++ E T Sbjct: 164 VLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQ 210 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236 +D T +V ++G + Q + A+ I ++ +LQK Sbjct: 211 LDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262 >gi|328675736|gb|AEB28411.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida 3523] Length = 693 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I++ V GS L G+T L TL + + G Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376 Query: 62 E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + + Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIKEH 547 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGADFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D +A + G G I++ + + D+D Sbjct: 131 IGASASLAISGAPYDDV-------------IAGVRVGYTNGKYILNPNKQDLKDSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 TD I+ V+ +E + + + A + +I Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|329956655|ref|ZP_08297228.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT 12056] gi|328524027|gb|EGF51103.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT 12056] Length = 753 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T L+T TL K+ I + Sbjct: 356 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 415 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 416 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 469 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 470 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 516 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 517 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 575 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 576 SKITECIAEP 585 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 49 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 102 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ R G KRE GR R++ RALR + + + ++ + Sbjct: 103 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 157 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V + D L + + G ++ + + G +++ + Sbjct: 158 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFE 206 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ + A + I K Q + ++ Sbjct: 207 QLEKADMDLMVGATYE-NIMMVEG--EMDEVSEKDLLEAMKAAHEAIKIQCKAQME-LAE 262 Query: 241 EV 242 EV Sbjct: 263 EV 264 >gi|325291527|ref|YP_004277391.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3] gi|325059380|gb|ADY63071.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3] Length = 715 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I + GS L G+T + ATL ++ G Sbjct: 316 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ L A+ ++ + Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANA 541 Query: 238 ISN 240 I+ Sbjct: 542 ITE 544 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 76/229 (33%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T +L T + + + + T G + Sbjct: 14 RPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + Q+++ VIQ D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G V G + G +++ E Sbjct: 126 PDVLSMVAASAALTLSGI-------------PFMGPVGGARVGYINGEYVLNPHLDEMDE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E ++D + +I Sbjct: 173 SVLDLVVAGTQDAVLMV---ESEAKELNEDVMLGAVMFGHRGFQPVIDA 218 >gi|212709941|ref|ZP_03318069.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM 30120] gi|212687453|gb|EEB46981.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM 30120] Length = 685 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + + G T Sbjct: 294 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 353 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 354 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSQAEFPYTVRVVSE 409 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 410 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDDFVV 456 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 457 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITREIMQVALNQAKGARLHILST 515 Query: 234 QKDVISNE 241 + I++ Sbjct: 516 MEQAINSP 523 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 23/185 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++ A + +V DT + TA ++E + + T G +P G+ + Sbjct: 2 IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIP---GSFFR 58 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR G + R+I R LR + L QII + A+ GA Sbjct: 59 RE---GRPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASA 115 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL G + A G + +++ E + +D TD Sbjct: 116 ALA-------------LSGVPFNGPIGAARVGFINDQYVLNPTADELKSSRLDLVVAGTD 162 Query: 196 SGHIV 200 S ++ Sbjct: 163 SAVLM 167 >gi|222823533|ref|YP_002575107.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari RM2100] gi|257096671|sp|B9KFM1|PNP_CAMLR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|222538755|gb|ACM63856.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari RM2100] Length = 702 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 84/242 (34%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR +R+I + + A GSCL G T L ATL + +N Sbjct: 322 RADGRGLKDVRKIDIETNILPSAHGSCLFTRGQTQALVVATLGNDNDAQMSDMLTEKNPI 381 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL VD + I + Sbjct: 382 CEKFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDADYIH--TIRLV 435 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A + G +AL E + V + AI + Sbjct: 436 SEILESNGSSSMATVCGGALALRAAGVKSEKLVAGVAMGLVFEEEKYAI---------LT 486 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G I +Q + Q L AK+ ++ L + Sbjct: 487 DIMGLEDHDGDMDFKVAGSHDG-ITALQMDIKLGGIEQKVLQEALYQAKEARGYILNLMQ 545 Query: 236 DV 237 + Sbjct: 546 EA 547 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 81/226 (35%), Gaps = 44/226 (19%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ + +L T EEK + +T +Y G +P G Sbjct: 19 VAKQAAGAVLMQEKNAVVLATVAREEK----MVEEDFLPLTVQYIEKAYAAGKIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 VKRE + G R+I R+LR + QI++ V+ AD + ++ Sbjct: 72 YVKRET---KPGDSETLSARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPEVDLQVMSL 126 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 A VAL+ +K V + G + +++ E +D Sbjct: 127 NAASVALY-------------LSDIPIKAPVCGVRIGRINNEFVLNPSNSELKNSTLDL- 172 Query: 191 FVMTDSGHIVEVQGSAER---------ATFSQDHFFAMLNLAKDRI 227 +V ++ ++ A S+D L+ A I Sbjct: 173 YVAGVKDELLMIEMRALSNKKDNQHCMNELSEDDTLKALDFASSAI 218 >gi|171912768|ref|ZP_02928238.1| polynucleotide phosphorylase/polyadenylase [Verrucomicrobium spinosum DSM 4136] Length = 707 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 31/231 (13%) Query: 13 EISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 +I+ A+G+ V+ GDT ++ TA ++E + + ++ A G P Sbjct: 14 DITFETGKLAKLADGAVTVRQGDTIVIVTAVSATKVKEGQDFFPLSVEYKEKAAAAGKFP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G KRE GR + RM R LR + QI+ ++ ADG Sbjct: 74 ---GGYFKRE---GRPTEKEILTCRMTDRPLRPLFPKGYYYDTQIVA--LLLSADGENDA 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 +I GA AL G V A+ G + G +++ + + + Sbjct: 126 DIISINGASAALC-------------VSDIPFAGPVGAVRVGRVNGQFVLNPTHSQRAKS 172 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D+D +V S ++ ++G+A + F L A++ + L+ +Q++ Sbjct: 173 DLDLVYVGNKS-EVIMIEGAANE--LPEAEFIKALAFAQEHVQVLVAVQEE 220 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 93/253 (36%), Gaps = 33/253 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56 R GR +Q+R +S + + GS L G+T L ATL +++ + Sbjct: 314 RADGRGIDQLRPLSGETGLIPRSHGSALFARGETQALALATLAPLDEAQEMDNYAGGETT 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + + R+ G + R++ VV S + + Sbjct: 374 KRFILHYNFPPFSVGETGRFGGQNRREIGHG----ALAERSVEPVVPSSEDFPYAMRVSS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G T A++ +AL D LK VA IS G++ Y Sbjct: 430 EVMESNGSTSMASVCSGVMALLDAGV-------------PLKRPVAGISVGLVSEYDANN 476 Query: 173 ------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ++D+ ED D+D T+ G + Q + + A Sbjct: 477 QMSRYLTMLDIIGSEDHFGDMDFKLCGTELG-VTGFQLDLKLPGIPLSILNEAIAKAVTG 535 Query: 227 IADLIKLQKDVIS 239 +++++ K I+ Sbjct: 536 RTNILEVMKSAIA 548 >gi|160944532|ref|ZP_02091760.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii M21/2] gi|158444314|gb|EDP21318.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii M21/2] Length = 713 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 88/243 (36%), Gaps = 30/243 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR N++R ++ + GS + G T +LTT TL + + T Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G G R + RAL V+ I + Sbjct: 382 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGALAERALVPVLPSLEEFPYTIRCVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 V+ ++G T A+I G+ +AL D +K VA ISCG++ G Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITEGERWMT 484 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IAD 229 ++D+ ED D+D T G I +Q + + D + + + Sbjct: 485 MLDIQGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDE 543 Query: 230 LIK 232 +IK Sbjct: 544 IIK 546 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 31/237 (13%) Query: 12 REISLTRRV---SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYG 64 R + A S L+++G+T ++ E V + N ++ G Sbjct: 25 RPFKVEMGKMCGLSNA--SALIRYGETCVMCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G+ ++RE GR G R+ R++ R +R + I + + D Sbjct: 83 RIP---GSFMRRE---GRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A + GA + G + + G++ G +++ + Sbjct: 137 PEIAGMIGASLVTA-------------VSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKV 183 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D+ T IV ++ A +D + A I +I+ +++ Sbjct: 184 SDLALTVAAT-MDKIVMIEAGANE--VDEDTMLTAIKTAHVEIKKIIEFINKIVAER 237 >gi|254563353|ref|YP_003070448.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens DM4] gi|254270631|emb|CAX26635.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens DM4] Length = 748 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I V A GS L G+T L ATL + G Sbjct: 316 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R V+ + I + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D ++ G I +Q + A +++ L AKD A ++ Sbjct: 483 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 38/236 (16%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ L + + A+GS + +G+T +L T + K P +T Y + Sbjct: 14 RKLVLETGKTARQADGSVVATYGETTVLATV-VAGKEPK--AGIDFLPLTVNYQERAYAA 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + + R+I R +R + Q+++ + Sbjct: 71 GRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G + A G L G ++ E + Sbjct: 128 IVAMVAASAAL-------------TLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAEST 174 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229 +D T ++ V+ A+ + F HF ++ LA+ + Sbjct: 175 LDLVVAGTQDA-VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKE 229 >gi|218532284|ref|YP_002423100.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium chloromethanicum CM4] gi|240140844|ref|YP_002965324.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens AM1] gi|254782727|sp|B7KN55|PNP_METC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096722|sp|A9W8P8|PNP_METEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218524587|gb|ACK85172.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium chloromethanicum CM4] gi|240010821|gb|ACS42047.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens AM1] Length = 745 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I V A GS L G+T L ATL + G Sbjct: 316 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R V+ + I + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D ++ G I +Q + A +++ L AKD A ++ Sbjct: 483 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 38/236 (16%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ L + + A+GS + +G+T +L T + K P +T Y + Sbjct: 14 RKLVLETGKTARQADGSVVATYGETTVLATV-VAGKEPK--AGIDFLPLTVNYQERAYAA 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + + R+I R +R + Q+++ + Sbjct: 71 GRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G + A G L G ++ E + Sbjct: 128 IVAMVAASAAL-------------TLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAEST 174 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229 +D T ++ V+ A+ + F HF ++ LA+ + Sbjct: 175 LDLVVAGTQDA-VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKE 229 >gi|163853425|ref|YP_001641468.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium extorquens PA1] gi|163665030|gb|ABY32397.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium extorquens PA1] Length = 752 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I V A GS L G+T L ATL + G Sbjct: 323 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R V+ + I + + Sbjct: 383 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSE 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L D + + +L+G A+ + D+ Sbjct: 439 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 489 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D ++ G I +Q + A +++ L AKD A ++ Sbjct: 490 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKA 548 Query: 238 I 238 + Sbjct: 549 L 549 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 38/236 (16%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ L + + A+GS + +G+T +L T + K P +T Y + Sbjct: 21 RKLVLETGKTARQADGSVVATYGETTVLATV-VAGKEPK--AGIDFLPLTVNYQERAYAA 77 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + + R+I R +R + Q+++ + Sbjct: 78 GRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 134 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G + A G L G ++ E + Sbjct: 135 IVAMVAASAAL-------------TLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAEST 181 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229 +D T ++ V+ A+ + F HF ++ LA+ + Sbjct: 182 LDLVVAGTQDA-VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKE 236 >gi|257083264|ref|ZP_05577625.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis Fly1] gi|257417915|ref|ZP_05594909.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T11] gi|256991294|gb|EEU78596.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis Fly1] gi|257159743|gb|EEU89703.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis T11] Length = 704 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L A+ E K V + + G +P Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + QI + D Sbjct: 74 ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S++ L D I +L+ Q+++++ Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223 >gi|85057750|ref|YP_456666.1| polynucleotide phosphorylase/polyadenylase [Aster yellows witches'-broom phytoplasma AYWB] gi|123725338|sp|Q2NJ06|PNP_AYWBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|84789855|gb|ABC65587.1| polyribonucleotide nucleotidyltransferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 715 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R R+ ++R + + A GS L G T L TL E K+ + + ++ Sbjct: 324 IRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGCLSESKIIDGLSDEQN 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A S R+ G + +A+ V+ I + Sbjct: 384 KRFMLHYNFPPFSVGAVGRYTAPSRREIGHGT----LAEKAISQVLPEEKDFPYTIRVVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A + + +AL LK VA IS G++ Sbjct: 440 EILESNGSSSQATVCSSSLAL-------------MASGVPLKKAVAGISVGLVFDQETNK 486 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G I +Q + AK + Sbjct: 487 YVILSDIQGLEDHVGDMDLKIAGTNKG-ITALQMDLKIQGIPFKILQEAFLQAKKGRLHI 545 Query: 231 IKLQKDVISNE 241 ++ IS Sbjct: 546 LEQMNQTISQP 556 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 27/219 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 ++ + S LV++ DT +LTT K N +T Y + G K Sbjct: 22 YARNVDSSILVRYQDTVVLTTMVFSRK----PNNLDFLPLTVIYQEKLYAAG---KIPGS 74 Query: 80 SGRQGGRS--QEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 R+ GRS EI R+I R+LR + Q+I + D Sbjct: 75 FLRREGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPD------------- 121 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 + + + ++ + G + I++ + + + T Sbjct: 122 FKSELASMLGSSLSLLISEIPFFEAISGVYVGKINNEFIINPTLQQLANSTLHLIVAGTK 181 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ++ ++ A S+ F +N A I L Q Sbjct: 182 H-NVTMIE--AHANEVSEQDFLEAINFAHQYIKKLCLFQ 217 >gi|325124334|gb|ADY83857.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter calcoaceticus PHEA-2] Length = 695 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I + V A GS L G+T L T TL + TK Sbjct: 315 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 375 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 431 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 478 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 536 Query: 234 QKDVIS 239 VIS Sbjct: 537 MNKVIS 542 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 43/237 (18%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++ L V++ A + L+ G +L P +T Y + G Sbjct: 15 QVVLETGRVARQAN-TVLITMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 70 Query: 72 NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123 + G++ GR+ E I R+I R +R + Q+ + AD Sbjct: 71 ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDAD- 126 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AA+ G AL +G + G++ G +++ ++ + Sbjct: 127 ---IAAMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLK 170 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 D+D T+S ++ +E S+D + +A I + Sbjct: 171 ESDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 224 >gi|317476402|ref|ZP_07935651.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii 1_2_48FAA] gi|316907428|gb|EFV29133.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii 1_2_48FAA] Length = 716 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T L+T TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNTGEEKY 479 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 SKITECIAEP 548 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ R G KRE GR R++ RALR + + + ++ + Sbjct: 66 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V + D L + + G ++ + + G +++ + Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFD 169 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ + A + I K Q + ++ Sbjct: 170 QLEKADMDLMVGATYE-NIMMVEG--EMNEVSEKDLLEAMKAAHEAIKIQCKAQME-LAE 225 Query: 241 EV 242 EV Sbjct: 226 EV 227 >gi|195505449|ref|XP_002099509.1| GE23317 [Drosophila yakuba] gi|194185610|gb|EDW99221.1| GE23317 [Drosophila yakuba] Length = 771 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 88/250 (35%), Gaps = 17/250 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54 +R GR +Q+R IS + K GS L + G T + T +L+ + ++ Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALES 413 Query: 55 ---KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 K Y P +TG + G G R + R+L + Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRRELGHGALAERSLLPTLPND--YPFT 467 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + +V++++G + A++ G +AL D + + + V K + + Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKYE-NDDTKHLQDY 526 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G +Q + L A D + ++ Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 585 Query: 232 KLQKDVISNE 241 + + I Sbjct: 586 DIMSEAIREP 595 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 90/234 (38%), Gaps = 30/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPR 68 R ++ + ++++A G+ + + GDT ++ TA V N G+ + +Y + Sbjct: 50 RNMTFSSGRLARFANGTAVCQMGDTAVMVTA-----VAKTKPNPGQGFMPLVVDYRLKNA 104 Query: 69 STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 ++G R+ + G +EI R+I R+LR + Q++ + + A Sbjct: 105 ASG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPD 163 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A +AL G + A+ G+ G +++ E + Sbjct: 164 VLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQ 210 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236 +D T +V ++G + Q + A+ I ++ +LQK Sbjct: 211 LDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262 >gi|156363851|ref|XP_001626253.1| predicted protein [Nematostella vectensis] gi|156213123|gb|EDO34153.1| predicted protein [Nematostella vectensis] Length = 276 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 86/255 (33%), Gaps = 25/255 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR RE L A GS LVK G+T ++ T E P G+I Sbjct: 22 IRPDGRGLFDFRETILNVGSISTANGSALVKLGNTTVVCGVTAEFAEPA-ADVPNKGFIV 80 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112 + P + + G +Q + I + ++DL L + Sbjct: 81 PNVDLPPLCSPSFR-----PGPPSEHAQVLSTFIDNLITNSQLIDLEDLCIVDGKLVWVL 135 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV---------LKGHVAA 163 ID + DG AA+ AL + H + + + + LK A Sbjct: 136 YIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTINEETETPEPSENKDIHLKLKSMPVA 195 Query: 164 ISCGMLCGYPI-VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222 ++ G+ I D E+ + VMT + +V V +QD ++ Sbjct: 196 VTFGIFDDDHIYCDPTDEEERLASGKVSVVMTTNNKVVAVHKPG-GPPLTQDKLQECFDV 254 Query: 223 AKDRIADLIKLQKDV 237 R+ ++ +L Sbjct: 255 TTGRVLEVQQLIDAA 269 >gi|293610159|ref|ZP_06692460.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827391|gb|EFF85755.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 697 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I + V A GS L G+T L T TL + TK Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538 Query: 234 QKDVIS 239 VIS Sbjct: 539 MNKVIS 544 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 43/237 (18%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++ L V++ A + L+ G +L P +T Y + G Sbjct: 17 QVVLETGRVARQAN-TVLITMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 72 Query: 72 NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123 + G++ GR+ E I R+I R +R + Q+ + AD Sbjct: 73 ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDAD- 128 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AA+ G AL +G + G++ G +++ ++ + Sbjct: 129 ---IAAMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLK 172 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 D+D T+S ++ +E S+D + +A I + Sbjct: 173 ESDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226 >gi|313206118|ref|YP_004045295.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer DSM 15868] gi|312445434|gb|ADQ81789.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer DSM 15868] gi|315022925|gb|EFT35948.1| Polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer RA-YM] gi|325336437|gb|ADZ12711.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Riemerella anatipestifer RA-GD] Length = 711 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 85/237 (35%), Gaps = 32/237 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55 +RL GR Q+R I A GS + G+T LTT TL ++ I Sbjct: 321 IRLDGRNNQQIRPIWSEVDYLPAAHGSSVFTRGETQSLTTVTLGSLMDANRIDSVITQHD 380 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P STG S R+ G + RAL+ ++ I I Sbjct: 381 ER-FYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKVMIPEET--PYTIRIV 433 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 D+++++G + A + +AL D M V+ I+ G++ Sbjct: 434 SDILESNGSSSMATVCAGTLALMDAGIPMRK-------------PVSGIAMGLITDKESG 480 Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T++G I Q + + D L AK+ Sbjct: 481 KWTVLSDILGDEDHLGDMDFKVTGTENG-ITACQMDIKIQGLTMDIMEQALMQAKNG 536 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 80/237 (33%), Gaps = 29/237 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 REI++ K A+G+ +VK G T LL T V + G + Sbjct: 17 REITIETGKLAKQADGAVVVKMGGTMLLATVVAAKEANPGVDFLPLTVDYREKFGAAGRI 76 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P GN +REA + R++ R +R + Q++I +I D Sbjct: 77 P---GNFFRREA---KPSDDEVLTMRLVDRVIRPLFPSDFHAEVQVMIS--LISYD---- 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G + + G ++ + E Sbjct: 125 -------EKVMPDSLAGLAASAAIAITDIPFNGPFSEVRVIKKDGVLSINPSW-ETLQSG 176 Query: 187 VDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 V+ + V IV V+G E ++ + A I ++ Q + ++ +V Sbjct: 177 VELDIMVGATKDSIVMVEG--EMDEITEQEMLEAITFAHQEIKTQVEAQ-ERLAQKV 230 >gi|163739819|ref|ZP_02147226.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter gallaeciensis BS107] gi|161386853|gb|EDQ11215.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter gallaeciensis BS107] Length = 712 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + GS L G+T L TL + HG + Sbjct: 318 RIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + +L+ S + + D+ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD G I +Q + A + + L+ AKD ++ Sbjct: 486 LGDEDHLGDMDFKVAGTDKG-ITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGEMAKA 544 Query: 238 ISN 240 +S Sbjct: 545 LSE 547 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L V++ A+G+ + G+T ++ T + +T Y + Sbjct: 16 LTLETGKVARQADGTVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 72 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 73 VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDST 184 A+ A AL G +AA G G +++ +D Sbjct: 128 MVAMIAASAALTLSGA-------------PFMGPIAAARVGFEGGEYVLNPTVDDMQDLR 174 Query: 185 IDVD--ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ D + V+ + V + S E ++ + A ++I +I L Sbjct: 175 LNPDQRLDLVVAGTKDAVMMVES-EAYELTEAEMLGAVKFAHEQIQPVIDL 224 >gi|89256821|ref|YP_514183.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. holarctica LVS] gi|156502987|ref|YP_001429052.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009860|ref|ZP_02274791.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp. holarctica FSC200] gi|254368103|ref|ZP_04984123.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica 257] gi|290953517|ref|ZP_06558138.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. holarctica URFT1] gi|295313209|ref|ZP_06803868.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. holarctica URFT1] gi|122500400|sp|Q2A269|PNP_FRATH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610265|sp|A7NDP3|PNP_FRATF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89144652|emb|CAJ79976.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica LVS] gi|134253913|gb|EBA53007.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica 257] gi|156253590|gb|ABU62096.1| putative polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 693 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I++ V GS L G+T L TL + + G Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376 Query: 62 E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + + Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIKEH 547 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D VA + G G I++ + + D+D Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 T I+ V+ +E + + + A + +I Sbjct: 178 VSGTYDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|27904826|ref|NP_777952.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38605103|sp|Q89AF8|PNP_BUCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27904224|gb|AAO27057.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 693 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR ++++R + + V GS L G+T L + TL + K Sbjct: 314 IRIDGRNKDEIRTLDVRTGVLPRVHGSALFTRGETQSLVSVTLGTSRDAQNLDELLGDKT 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P + G + R+ G ++ R++ +V+ L I I Sbjct: 374 DNFLFHYNFPPYAVGEIGMVGSPKRREIGHG----KLAKRSILAVMPKLDLFPYTIRIVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ GA +AL D + +A I+ G++ Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PISNAIAGIAMGLIKEGDDFV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D + G I +Q + + + L AK+ ++ Sbjct: 477 VLTDILGDEDHLGDMDFKISGSKKG-ITALQMDIKVKGITNEIMKLALYQAKNARIHILN 535 Query: 233 LQKDVIS 239 + K ++ Sbjct: 536 IMKKSLN 542 Score = 79.4 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 34/232 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + L DT + T ++K + + T G +P Sbjct: 16 VTLETGIMARQATAAVLTSMDDTTVFVTVVGQKKLQTEQKFFPMTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R +R + QII + Sbjct: 75 --GGFFRRE---GRPSENEILIARLIDRPIRPLFPKRFFNEVQIIATVVSLNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 AI GA AL G + A G + I++ + E + +D Sbjct: 130 AIIGASAALS-------------ISGMPFLGPIGAARIGYINNQYILNPNVNEIKSSSLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T+ ++ AE +++ +N + QK VI N Sbjct: 177 LIISGTEESVLMV---EAEANMLTEEQIINAINYG-------HEQQKIVIKN 218 >gi|115315207|ref|YP_763930.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. holarctica OSU18] gi|122324796|sp|Q0BKU1|PNP_FRATO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115130106|gb|ABI83293.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica OSU18] Length = 693 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I++ V GS L G+T L TL + + G Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376 Query: 62 E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + + Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIKEH 547 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D VA + G G I++ + + D+D Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 T I+ V+ +E + + + A + +I Sbjct: 178 VSGTYDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|224049203|ref|XP_002187964.1| PREDICTED: exosome component 9 [Taeniopygia guttata] Length = 434 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 92/262 (35%), Gaps = 32/262 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59 MRL GRQ R I ++ A+ G C+V+ G T +L + E VP G + Sbjct: 16 MRLDGRQCYDYRNIRVSFG----ADRGCCMVELGRTRVLAQVS-CELVPPKPSRPTEGVL 70 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--Q 111 + P + GRQ + R++ R LR ++ +L G + Q Sbjct: 71 FFNLELSPMAAPG-----LEPGRQSELVVSLNRLLERCLRDSKCIETESLCVVAGEKVWQ 125 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHV 161 I +D ++ DG AA VAL + + + + + Sbjct: 126 IRLDMHLLNHDGNITDAASIAGIVALCHFRRPDVSVQGEEVTVYTAEERDPVPLSIHHMP 185 Query: 162 AAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219 +S Y +VD E+ +D M I +Q S D Sbjct: 186 ICVSFAFFHQGTYLLVDPTEREERVMDGLLVIAMNKHHEICTIQSSG-VVMLLPDQILRC 244 Query: 220 LNLAKDRIADLIKLQKDVISNE 241 + ++A++ +L + + N+ Sbjct: 245 SKITAVKVAEITELIQKALEND 266 >gi|332799230|ref|YP_004460729.1| polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp. Re1] gi|332696965|gb|AEE91422.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp. Re1] Length = 700 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R GR NQ+R IS + GS L G T +LT ATL + I + + Sbjct: 310 IRPDGRTPNQIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILDGLGIEES 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG V G R + RAL ++ I + Sbjct: 370 KRYMHHYNFPPYSTGETK----VIRGPGRREIGHGALAERALEPMIPSEEDFPYTIRLVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V+ ++G + A++ G+ +AL D +K V+ ++ G++ Sbjct: 426 EVLSSNGSSSMASVCGSTLALMDAGV-------------PIKAPVSGVAMGLIKQGDKVT 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T +G I +Q + +D + L A++ Sbjct: 473 ILTDIQGMEDFLGDMDFKVAGTKNG-ITAIQMDIKIKGIDEDILKSALQQAREG 525 Score = 98.2 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 27/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + V++ A GS ++++ DT LL TAT E V + G + Sbjct: 11 RKLIIETGKVAQQANGSVMIRYEDTVLLVTATASKKPREGVDFLPLTIDYEEKLYAVGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R LR + Q+I + D Sbjct: 71 P---GGFIKRE---GKPSEKAILSARLIDRPLRPLFPKDFRNDVQVIATVLSVDQDNTPD 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA AL +G V A+S G++ G +++ E Sbjct: 125 IVAINGASCALC-------------ISDIPFEGPVGAVSVGLIDGKYVINPTVSEAEKSR 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T ++ V+ A+ S++ + + + I +I Q+++I+ Sbjct: 172 LRLVVAGTKEA-VLMVEAGADE--VSENEMLSAILYGHEEIKKIIAFQEEIINE 222 >gi|254369705|ref|ZP_04985715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|157122664|gb|EDO66793.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. holarctica FSC022] Length = 693 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I++ V GS L G+T L TL + + G Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376 Query: 62 E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + + Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIKEH 547 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D VA + G G I++ + + D+D Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 TD I+ V+ +E + + + A + +I Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|213018630|ref|ZP_03334438.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995581|gb|EEB56221.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 758 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56 +R+ R+ +++R+I + + GS L G T L TA T +E++ I + Sbjct: 310 VRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRR 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P + G + G R ++ +A+ V+ + I + Sbjct: 370 EHFMLHYNFPPFAVGE----ASAIRAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +++++DG + A + G +AL D +K VA I+ G++ Sbjct: 426 EIMESDGSSSMATVCGTSIALMDTGV-------------PIKAPVAGIAMGLIKDKNEHI 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S + L AK +++ Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-ITALQMDMKIPGISFEIVEKSLEQAKVGRLHILE 531 Query: 233 LQKDVISNE 241 VIS Sbjct: 532 KMNAVISEH 540 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 33/235 (14%) Query: 10 QMREISLTRR-VSKYAEGSCLVKFGD----THLLTTATLEEKVPMWIRNTKHGWITAEYG 64 + R +SL +++ A+GS +VK +H T EE V N + I Y Sbjct: 12 EGRTLSLETGKIARQADGSVVVKLWRYFYLSHC-CTKKKEESVDFLPLNVQF--IAKSYA 68 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD-- 122 M G KRE G+ R I R+I R++R + I + C+++ D Sbjct: 69 MGKIP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTV 122 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGE 181 A+ G AL +A + G I++ E Sbjct: 123 NSPEVPALIGTVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQE 169 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D F+ D I+ V+ +E S+++ + + + +IKL K+ Sbjct: 170 MKASNLDL-FLSGDENSILMVE--SEVKELSEENVLNAIKFGHEHLQPVIKLIKE 221 >gi|187932015|ref|YP_001892000.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. mediasiatica FSC147] gi|257096689|sp|B2SDK7|PNP_FRATM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187712924|gb|ACD31221.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. mediasiatica FSC147] Length = 693 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I++ V GS L G+T L TL + + G Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376 Query: 62 E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + + Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIKEH 547 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNIVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D VA + G G I++ + + D+D Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 TD I+ V+ +E + + + A + +I Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|307278201|ref|ZP_07559283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0860] gi|306505190|gb|EFM74378.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX0860] Length = 694 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 308 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 367 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 368 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 423 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 424 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 470 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK ++++ Sbjct: 471 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 529 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 31/231 (13%) Query: 12 REISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLPR 68 R IS + A G+ LV++GDT +L A+ E K V + + G +P Sbjct: 11 RPIS------QKANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP- 63 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR R+ R+I R +R + QI ++ D A Sbjct: 64 --GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEMA 118 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL G +A + G + G +++ + D++ Sbjct: 119 AMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIE 165 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ L D I +L+ Q+++++ Sbjct: 166 LTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 213 >gi|262374052|ref|ZP_06067329.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii SH205] gi|262311063|gb|EEY92150.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii SH205] Length = 697 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I + V A GS L G+T L T TL + TK Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538 Query: 234 QKDVIS 239 VIS Sbjct: 539 MNKVIS 544 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 43/237 (18%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++ L V++ A + LV G +L P +T Y + G Sbjct: 17 QVVLETGRVARQAN-TVLVTMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 72 Query: 72 NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123 + G++ GR+ E I R+I R +R + Q+ + AD Sbjct: 73 ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDAD- 128 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AA+ G AL +G + G++ G +++ ++ + + Sbjct: 129 ---IAAMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLA 172 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 D+D T+S ++ +E S+D + +A I + Sbjct: 173 QSDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226 >gi|170067614|ref|XP_001868552.1| exosome component 6 [Culex quinquefasciatus] gi|167863716|gb|EDS27099.1| exosome component 6 [Culex quinquefasciatus] Length = 246 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 18/170 (10%) Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 + V A+GS ++ G+T ++ + ++P + G + + P + +R Sbjct: 1 MKLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGELYCDLKFSPFACVHRKN 60 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 + + RS + + +AL+ VV + QI I +V++ DG A IT A + Sbjct: 61 PQTDA---EERS--LAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLGAVITAAGL 115 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AL D M D V A + + +D E+ Sbjct: 116 ALSDATISMFDI-------------VTATTVAVYGDRIYLDPTLAEERLC 152 >gi|126740759|ref|ZP_01756444.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp. SK209-2-6] gi|126718055|gb|EBA14772.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp. SK209-2-6] Length = 705 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 94/243 (38%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R+I + GS L G+T L TL + HG + Sbjct: 310 RIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 370 NFLLHYNFPPYSVGEVGR----VGGPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 425 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + +L+ S + + D+ Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 477 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + A + + L AKD ++ Sbjct: 478 LGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITPEIMEKALAQAKDGRLHILGEMAKA 536 Query: 238 ISN 240 ++ Sbjct: 537 LTE 539 Score = 71.7 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 78/234 (33%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L V++ A+GS + G+T ++ T + +T Y + Sbjct: 8 LTLETGKVARQADGSVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 64 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 65 VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G +A G G +++ D D Sbjct: 120 MVAMIAASAALTLSGA-------------PFMGPIAGARVGFEDGEYVLNPTV--DDMQD 164 Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + N V ++ V+ +E S+ + A ++I ++ L Sbjct: 165 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVKFAHEQIQPVVDL 216 >gi|298377863|ref|ZP_06987813.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19] gi|301312258|ref|ZP_07218175.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3] gi|298265309|gb|EFI06972.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19] gi|300829680|gb|EFK60333.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3] Length = 746 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 24/245 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 RL GR+ ++R I + GS + G+T L+T TL K + N + Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL+ ++ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHG----NLAHRALKRMIPDN--YPYVVRVISD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 +++++G + A + +AL D M+ + + IS Y I+ D Sbjct: 433 ILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMG--------LISENKGTNYAILSD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232 + ED D+D T G I Q + S + L AK+ + +++ Sbjct: 485 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILE 543 Query: 233 LQKDV 237 Q + Sbjct: 544 AQPEA 548 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A+G+ V+ +T LL T V ++ + +G Sbjct: 15 RTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGRF 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G+ R++ RALR + + ++ ++ + ADG Sbjct: 75 P---GGFTKRE---GKASDYEILTSRLVDRALRPLFPDN--YHAEVYVNIILFSADG--- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 L D L + + G ++ + G IV+ E D Sbjct: 124 --------EDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T +I+ V+G E + + +A + I K Q + Sbjct: 176 IDIMVAATID-NIMMVEG--EMNEVQESEMLEAIKVAHEAIKVQCKAQLE 222 >gi|163744086|ref|ZP_02151452.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter gallaeciensis 2.10] gi|161382633|gb|EDQ07036.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter gallaeciensis 2.10] Length = 704 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + GS L G+T L TL + HG + Sbjct: 310 RIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 369 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 370 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 425 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + +L+ S + + D+ Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 477 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD G I +Q + A + + L+ AKD ++ Sbjct: 478 LGDEDHLGDMDFKVAGTDKG-ITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGEMAKA 536 Query: 238 ISN 240 +S Sbjct: 537 LSE 539 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L V++ A+G+ + G+T ++ T + +T Y + Sbjct: 8 LTLETGKVARQADGTVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 64 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 65 VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDST 184 A+ A AL G +AA G G +++ +D Sbjct: 120 MVAMIAASAALTLSGA-------------PFMGPIAAARVGFEGGEYVLNPTVDDMQDLR 166 Query: 185 IDVD--ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ D + V+ + V + S E ++ + A ++I +I L Sbjct: 167 LNPDQRLDLVVAGTKDAVMMVES-EAYELTEAEMLGAVKFAHEQIQPVIDL 216 >gi|167630367|ref|YP_001680866.1| polyribonucleotide nucleotidyltransferase [Heliobacterium modesticaldum Ice1] gi|257096694|sp|B0THS2|PNP_HELMI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167593107|gb|ABZ84855.1| polyribonucleotide nucleotidyltransferase [Heliobacterium modesticaldum Ice1] Length = 709 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 86/233 (36%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R GR+ +++R IS+ + GS L G T +L TL + I + + Sbjct: 311 RPDGRKMDEIRPISVEVGILPRTHGSGLFTRGQTQVLNVCTLGTIADLQILDGLGVEESK 370 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R+ G + RAL V+ I + + Sbjct: 371 RYMHHYNFPPYSVGETRPMRGPGRREIGHG----ALAERALLPVIPSEDEFPYTIRLVSE 426 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 ++++G T A++ G+ ++L + +K VA I+ G++ G Sbjct: 427 AVESNGSTSMASVCGSTLSLMNAGV-------------PIKKPVAGIAMGLIKEGEHFSI 473 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G + +Q + +++ L A+ Sbjct: 474 LSDIQGMEDHLGDMDFKVAGTADG-VTALQMDIKIKGVNREILTQALQQARKG 525 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +++ V+K A GS L ++GDT +L TAT + + + G + Sbjct: 11 RTLTIETGRVAKQAGGSVLARYGDTVVLVTATGSKEPRPGIDFFPLTVDYEERLYAVGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + Q++ + D Sbjct: 71 P---GGFIKRE---GRPTEKAILSARLIDRPIRPLFPKGFRNDVQVVATVMSVDQDCPPD 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + GA AL +G + + G + G +++ + D Sbjct: 125 IVGMIGASCALS-------------LSDIPFEGPIGGVLVGRVDGKLLINPTMEQAEKSD 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T ++ V+ A ++ + I ++ Q+++++ Sbjct: 172 MHLVVAGTKDA-VMMVEAGANEVP--EEDMIEAIMFGHQEIQRIVAFQEEMVA 221 >gi|118497208|ref|YP_898258.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. novicida U112] gi|194323507|ref|ZP_03057284.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp. novicida FTE] gi|254372573|ref|ZP_04988062.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|254374032|ref|ZP_04989514.1| polyribonucleotide nucleotidyltransferase [Francisella novicida GA99-3548] gi|187610266|sp|A0Q5I9|PNP_FRATN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118423114|gb|ABK89504.1| polyribonucleotide nucleotidyltransferase [Francisella novicida U112] gi|151570300|gb|EDN35954.1| polyribonucleotide nucleotidyltransferase [Francisella novicida GA99-3549] gi|151571752|gb|EDN37406.1| polyribonucleotide nucleotidyltransferase [Francisella novicida GA99-3548] gi|194322362|gb|EDX19843.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp. novicida FTE] Length = 693 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I++ V GS L G+T L TL + + G Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376 Query: 62 E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + + Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIKEH 547 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D VA + G G I++ + + D+D Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 TD I+ V+ +E + + + A + +I Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|254482485|ref|ZP_05095724.1| 3' exoribonuclease family, domain 2, protein [marine gamma proteobacterium HTCC2148] gi|214037176|gb|EEB77844.1| 3' exoribonuclease family, domain 2, protein [marine gamma proteobacterium HTCC2148] Length = 703 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 87/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I+ V A GS L G+T + TL I + HG Sbjct: 314 RIDGRDTRTVRAIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTRDAQIIDALHGERRD 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R+ G R+ R L +V+ I + + Sbjct: 374 PFMLHYNFPPYSVGEAGRVGFTSRREVGHG----RLARRGLAAVLPNQEEFPYTIRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ + L LK VA I+ G++ Sbjct: 430 ITESNGSSSMASVCAGSLGLMAAGV-------------PLKAPVAGIAMGLVKDGNQFAV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + L+ A+ ++ Sbjct: 477 LTDILGDEDHLGDMDFKVAGTAEG-ITALQMDIKIEGITAQIMETALDQAQHARLHILGQ 535 Query: 234 QKDVISN 240 +V++ Sbjct: 536 MNEVLAE 542 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 32/235 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A GS LV +T +L T E + + T G +P Sbjct: 15 VTLETGRIARQATGSVLVTVENTSVLCTVVAEKTQRPGRDFFPLAVHYVEKTYSVGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 G KREA R + R+I R +R + + Q++ C V+ AD Sbjct: 74 --GGFFKREA---RPSEKETLTSRLIDRPIRPLFPNGFMNEVQVV--CTVMSADKHIDPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 A+ G AL G + G I++ Y + Sbjct: 127 IPAMIGTSAALAISGA-------------PFNGPIGGARVGFSDEKGYILNPTYEQLEES 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T ++ +E S+D + A + +++ ++++ Sbjct: 174 KLDMVVAGTADAVLMV---ESEAKELSEDQMLGAVLFAHQEMQTVVQAINELVAE 225 >gi|293573060|ref|ZP_06684001.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E980] gi|291606879|gb|EFF36260.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E980] Length = 736 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 406 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 461 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 508 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK ++++ Sbjct: 509 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 567 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+ A ++ + + G +P Sbjct: 42 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 102 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 155 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 156 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ S++ L D I +L+ Q++++ Sbjct: 203 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250 >gi|293556873|ref|ZP_06675434.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1039] gi|291600957|gb|EFF31248.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1039] Length = 736 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 406 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 461 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 508 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK ++++ Sbjct: 509 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 567 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+ A ++ + + G +P Sbjct: 42 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 102 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAV 155 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 156 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ S++ L D I +L+ Q++++ Sbjct: 203 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250 >gi|295687493|ref|YP_003591186.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC 21756] gi|295429396|gb|ADG08568.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC 21756] Length = 712 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 20/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR +R I + GS L G+T + ATL + G Sbjct: 316 LRIDGRDVRTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RALR ++ I + Sbjct: 376 ESFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRALRPMLPSKEDFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 ++ +++G + A + G+ +A+ D + + + +L+ G+ ++ Sbjct: 432 EITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILE----------KDGFAVLS 481 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G + +Q + A + L AK+ A ++ Sbjct: 482 DILGDEDHLGDMDFKVAGTSEG-LTSLQMDIKIAGITPQIMEQALAQAKEGRAHILGEMN 540 Query: 236 DVI 238 + Sbjct: 541 KAM 543 Score = 84.8 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 40/233 (17%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71 L +++ A+G+ L G+T +L TA +T Y + G Sbjct: 18 LETGRIARQADGAVLATMGETVVLATAVF---AKSQKPGQDFFPLTVNYQEKTFAAGKIP 74 Query: 72 -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128 KRE GR + + R+I R +R + Q+++ V+Q D Sbjct: 75 GGFFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVT--VLQHDLENDPDIL 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + A AL G + A G + G +++ E +D Sbjct: 130 GMVAASAALTLSGA-------------PFMGPIGAARVGWVDGAYVLNPTLDEMKESKMD 176 Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAM----LNLAKDRIAD 229 T ++ E+Q +E F+ A+ ++LA+ + Sbjct: 177 LVVAGTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKE 229 >gi|262384733|ref|ZP_06077866.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B] gi|262293714|gb|EEY81649.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B] Length = 746 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 24/245 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 RL GR+ ++R I + GS + G+T L+T TL K + N + Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL+ ++ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHG----NLAHRALKRMIPDN--YPYVVRVISD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 +++++G + A + +AL D M+ + + IS Y I+ D Sbjct: 433 ILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMG--------LISENKGTNYAILSD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232 + ED D+D T G I Q + S + L AK+ + +++ Sbjct: 485 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILE 543 Query: 233 LQKDV 237 Q + Sbjct: 544 AQPEA 548 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A+G+ V+ +T LL T V ++ + +G Sbjct: 15 RTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGRF 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G+ R++ RALR + + ++ ++ + ADG Sbjct: 75 P---GGFTKRE---GKASDYEILTSRLVDRALRPLFPDN--YHAEVYVNIILFSADG--- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 L D L + + G ++ + G IV+ E D Sbjct: 124 --------EDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T +I+ V+G E + + +A + I K Q + Sbjct: 176 IDIMVAATID-NIMMVEG--EMNEVQESEMLEAIKVAHEAIKVQCKAQLE 222 >gi|227550843|ref|ZP_03980892.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium TX1330] gi|293379257|ref|ZP_06625403.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium PC4.1] gi|227179941|gb|EEI60913.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium TX1330] gi|292642053|gb|EFF60217.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium PC4.1] Length = 736 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 406 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 461 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 508 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK ++++ Sbjct: 509 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 567 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+ A ++ + + G +P Sbjct: 42 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 102 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 155 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 156 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ S++ L D I +L+ Q++++ Sbjct: 203 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250 >gi|208779001|ref|ZP_03246347.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG] gi|208744801|gb|EDZ91099.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG] Length = 693 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I++ V GS L G+T L TL + + G Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376 Query: 62 E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + + Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIKEH 547 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D VA + G G I++ + + D+D Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 TD I+ V+ +E + + + A + +I Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|150009352|ref|YP_001304095.1| polynucleotide phosphorylase/polyadenylase [Parabacteroides distasonis ATCC 8503] gi|255016204|ref|ZP_05288330.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. 2_1_7] gi|256842357|ref|ZP_05547860.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13] gi|187610323|sp|A6LFK9|PNP_PARD8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149937776|gb|ABR44473.1| polyribonucleotide nucleotidyltransferase [Parabacteroides distasonis ATCC 8503] gi|256735964|gb|EEU49295.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13] Length = 746 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 24/245 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 RL GR+ ++R I + GS + G+T L+T TL K + N + Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL+ ++ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHG----NLAHRALKRMIPDN--YPYVVRVISD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 +++++G + A + +AL D M+ + + IS Y I+ D Sbjct: 433 ILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMG--------LISENKGTNYAILSD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232 + ED D+D T G I Q + S + L AK+ + +++ Sbjct: 485 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILE 543 Query: 233 LQKDV 237 Q + Sbjct: 544 AQPEA 548 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I++ K A+G+ V+ +T LL T V ++ + +G Sbjct: 15 RTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGRF 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G+ R++ RALR + + ++ ++ + ADG Sbjct: 75 P---GGFTKRE---GKASDYEILTSRLVDRALRPLFPDN--YHAEVYVNIILFSADG--- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 L D L + + G ++ + G IV+ E D Sbjct: 124 --------EDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T +I+ V+G E + + +A + I K Q + Sbjct: 176 IDIMVAATID-NIMMVEG--EMNEVQESEMLEAIKVAHEAIKVQCKAQLE 222 >gi|86139387|ref|ZP_01057956.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193] gi|85823890|gb|EAQ44096.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193] Length = 702 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 93/243 (38%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R+I + GS L G+T L TL + HG + Sbjct: 310 RIDGRATDEIRDIVSETGMLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I + + Sbjct: 370 NFLLHYNFPPYSVGEVGR----VGGPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 425 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + +L+ S + + D+ Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 477 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A + + L AK ++ Sbjct: 478 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGEMNKA 536 Query: 238 ISN 240 +S Sbjct: 537 LSG 539 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 78/234 (33%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L V++ A+GS + G+T ++ T K +T Y + Sbjct: 8 LTLETGKVARQADGSVIATLGETSVMANVTFARKQKP---GQDFFPLTVHYQEKYYAAGK 64 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 65 VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G +AA G G +++ D D Sbjct: 120 MVAMIAASAALTLSGA-------------PFMGPIAAARVGFEGGEYVLNPTV--DDMQD 164 Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + N V ++ V+ +E S+ + A D I +I L Sbjct: 165 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVKFAHDAIQPVIDL 216 >gi|69248510|ref|ZP_00604759.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO] gi|258615105|ref|ZP_05712875.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium DO] gi|293567824|ref|ZP_06679165.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1071] gi|294614599|ref|ZP_06694503.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1636] gi|294618481|ref|ZP_06698045.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1679] gi|294621222|ref|ZP_06700407.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium U0317] gi|314938851|ref|ZP_07846122.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133a04] gi|314943656|ref|ZP_07850410.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133C] gi|314949091|ref|ZP_07852451.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0082] gi|314952184|ref|ZP_07855202.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133A] gi|314994554|ref|ZP_07859820.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133B] gi|314996553|ref|ZP_07861590.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133a01] gi|68194404|gb|EAN08910.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO] gi|291589409|gb|EFF21216.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1071] gi|291592501|gb|EFF24106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1636] gi|291595238|gb|EFF26567.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1679] gi|291599218|gb|EFF30250.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium U0317] gi|313589294|gb|EFR68139.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133a01] gi|313591076|gb|EFR69921.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133B] gi|313595716|gb|EFR74561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133A] gi|313597693|gb|EFR76538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133C] gi|313641862|gb|EFS06442.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0133a04] gi|313644507|gb|EFS09087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TX0082] Length = 736 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 406 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 461 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 508 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK ++++ Sbjct: 509 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 567 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+ A ++ + + G +P Sbjct: 42 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 102 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 155 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 156 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ S++ L D I +L+ Q++++ Sbjct: 203 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250 >gi|113954008|ref|YP_731290.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CC9311] gi|123327683|sp|Q0I8D2|PNP_SYNS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|113881359|gb|ABI46317.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. CC9311] Length = 721 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 36/238 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A GS +++ GDT +L TAT + +Y Sbjct: 13 REIRLTTGRYAPQAGGSVMIECGDTSVLVTAT----RSKGRDGIDFLPLICDYEERLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122 R G+ ++RE+ R R+ I R+I R +R + QI+ C + AD Sbjct: 69 GRIPGSFMRRES---RPPERATLICRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPAD 125 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 A+TGA +A G +AA+ G+L +++ Y E Sbjct: 126 ----VLAVTGASMATLLA-------------KIPFYGPMAAVRVGLLGDDFVLNPSYREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D T G +V V+ A + + ++ + +++LIK Q+ ++ Sbjct: 169 ERGDLDLVVAGTPQG-VVMVEAGANQ--LPEGDVIEAIDFGYEAVSELIKAQQSILKE 223 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 R+ GR +Q+R IS V K GS L + G T +L+TATL + + Sbjct: 323 RVDGRNLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSNE 382 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + R+ G + RA+ V+ + + Sbjct: 383 KTYLHHYNFPAYSVGETRPMRSPGRREIGHG----ALAERAIVPVLPAKDTFPYVVRVVS 438 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V+ ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKSPVSGAAMGLIKEGDEVK 485 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED +D+D TD G I +Q + +N A+ +++ Sbjct: 486 ILTDIQGIEDFLVDMDFKVAGTDKG-ITALQMDMKITGLPVSIVADAVNQARPARLHILE 544 Query: 233 LQKDVISNE 241 + I + Sbjct: 545 KMMEAIESP 553 >gi|327482021|gb|AEA85331.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri DSM 4166] Length = 701 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R + +++ + I + + Sbjct: 376 AFMLHYNFPPYSVGE-CGRMGATGR---REIGHGRLARRGVAAMLPSADEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A + +++ Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEIALGQALEARLNILGQ 537 Query: 234 QKDVISN 240 VI+ Sbjct: 538 MNQVIAQ 544 Score = 58.6 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T + + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA R + R+I R +R + Q+I Sbjct: 75 ---GGFFKREA---RPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G + A +++ +Y + Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPIGAARVAFHPETGYLLNPNYEQLKASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +IK ++ Sbjct: 176 LDMVVAGTKDAVLMV---ESEAKELTEDQMLGAVLFAHDEFQAVIKAVEE 222 >gi|144899450|emb|CAM76314.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Magnetospirillum gryphiswaldense MSR-1] Length = 721 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 83/230 (36%), Gaps = 18/230 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I V A GS L G+T L ATL I + G Sbjct: 315 IRIDGRDTKTVRAIESQVGVLPRAHGSALFTRGETQALVVATLGTGQDEQIIDALDGEYR 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+R + I + Sbjct: 375 ENFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAVRPCLPTKESFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A + G+ +A+ D M + + + A+ + D Sbjct: 431 EITESNGSSSMATVCGSSLAMMDAGVPMPRPVAGIAMGLIKEDSGFAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED D+D T G + +Q + + +++ L AKD Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VTALQMDIKITSITEEIMKIALGQAKDG 530 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 31/216 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R++ L +++ A+G+ L +GDT +L T + + + + G + Sbjct: 16 RKLVLEAGKIARQADGAVLATYGDTTVLCTVVGAKAPKPGIDFFPLTVNYQEKAFAAGKI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + Q++ C V+ D Sbjct: 76 P---GGFFKRE---GRPSEKETLVSRLIDRPIRPLFVDGYRNETQVV--CTVLSHDLEND 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ GA AL G +AA G + G +++ + Sbjct: 128 PDIVAMVGASAAL-------------TISGLPFMGPIAAARVGYINGEYVLNPTTAQVKE 174 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 +D T G ++ +E S+D + Sbjct: 175 SALDLVVAGTVEGVLMV---ESEAKELSEDIMLGAV 207 >gi|58584280|ref|YP_197853.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75498164|sp|Q5GTR3|PNP_WOLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|58418596|gb|AAW70611.1| Polyribonucleotide nucleotidyltransferase, pnp [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 755 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKHG 57 R+ GR+ +++R+I + + GS L G T L TA T +E++ I + Sbjct: 311 RIDGRKYDEIRQIEVEVDILSRTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRRE 370 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y + G+ + G R ++ +A+ V+ + I + + Sbjct: 371 HFMLHYNFPSFAVGD----ASAIRAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVSE 426 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 ++++DG + A + G +AL D +K VA I+ G++ Sbjct: 427 IMESDGSSSMATVCGTSLALMDTGV-------------PIKSPVAGIAMGLIKDKNDYVI 473 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + S + L AK +++ Sbjct: 474 LSDILGDEDYLGDMDFKVAGTSEG-ITALQMDMKISGISFEIVEKSLEQAKAGRLHILEK 532 Query: 234 QKDVISNE 241 VIS Sbjct: 533 MNSVISEH 540 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 31/232 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R +SL +++ A+GS +V +GDT +L T EE V N + I Y M Sbjct: 14 RTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKKEEIVDFLPLNVQF--IAKSYAM-G 70 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 R G KRE G+ R I R+I R++R + L +I I C+++ D Sbjct: 71 RIPGGFFKRE---GKPSDRETLISRVIDRSIRPLF-LEGFHD-EISIVCNLLTYDTVNPP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184 A+ GA AL +A + G I++ E Sbjct: 126 EVPALIGAVAALA-------------ISGVPFHFIIAGVLVGCDGNNNYILNPSVQEMKV 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D F+ D I+ V+ +E +++ + + + +IKL K+ Sbjct: 173 SSLDL-FLSGDERSILMVE--SEAKELPEENILNAIKFGHEHLQPVIKLIKE 221 >gi|50119663|ref|YP_048830.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium atrosepticum SCRI1043] gi|81646171|sp|Q6D9A1|PNP_ERWCT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49610189|emb|CAG73631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 706 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + + Sbjct: 375 RFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR R+I R +R + L Q+I + Sbjct: 75 --GGFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + G L +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFSGPIGVARVGYLNDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T G ++ V+ AE S+D + Sbjct: 177 LVVAGTQ-GAVLMVESEAE--LLSEDQMLGAV 205 >gi|294085143|ref|YP_003551903.1| polyribonucleotide nucleotidyltransferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664718|gb|ADE39819.1| Polyribonucleotide nucleotidyltransferase [Candidatus Puniceispirillum marinum IMCC1322] Length = 709 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 92/244 (37%), Gaps = 18/244 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I A GS L G+T + ATL +E++ + Sbjct: 311 VRIDGRDTKTVRAIVSEAGFLPRAHGSALFTRGETQAMVVATLGTGQDEQIIDSLVGEGR 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+R ++ + + Sbjct: 371 SNFMLHYNFPPYSVGEAGR----VGSPGRREIGHGKLAWRAIRPLMPSKEEFPYTVRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++ +++G + A + G +AL D + + + +G A+ + D Sbjct: 427 EITESNGSSSMATVCGGSLALMDSGVPLARPVAGIAMGLIKEGDDFAV---------LSD 477 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D +D+G I +Q + + + + L+ A+D ++ Sbjct: 478 ILGDEDHLGDMDFKVAGSDAG-ITSLQMDIKITSITPEIMQIALDQARDGRIHILGEMAK 536 Query: 237 VISN 240 +++ Sbjct: 537 ALTS 540 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 81/228 (35%), Gaps = 31/228 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 + L V++ A+G+ +V G+T +L TA ++ +T Y + G Sbjct: 15 PLVLESGKVARQADGAVMVTLGETTVLCTAVAAQQAKP---GQDFFPLTVNYQEKAFAAG 71 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 KRE GR + R+I R +R + S Q+I C V+ D Sbjct: 72 KIPGGFFKRE---GRPSENETLVCRLIDRPIRPLFPKSFKCETQVI--CTVLSHDMENNP 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AA+ GA AL G +A G + +++ + Sbjct: 127 DIAAMIGASAAL-------------TLSGVPFFGPIAGARIGWINDEYVLNPTVEQMDES 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D+D T G ++ +E S++ +N D I +I+ Sbjct: 174 DLDLVMAGTMEGVLMV---ESEAQELSEEVMLGAVNFGHDAIKPVIEA 218 >gi|325103803|ref|YP_004273457.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM 12145] gi|324972651|gb|ADY51635.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM 12145] Length = 732 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 89/251 (35%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +RL GR Q+R I A GS + G+T LTT TL + + + + Sbjct: 318 VRLDGRNSKQIRPIWSEVDYLPSAHGSSIFTRGETQSLTTVTLGSNDDEQMIDGAFISGY 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y STG V R+ G + RA++ V+ I + Sbjct: 378 NRFMLHYNFPAFSTGEARPNRGVGRREVGHG----NLAMRAIKKVLPPDNENPYVIRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D+++++G + A + +AL D + V+ I+ G++ Sbjct: 434 DILESNGSSSMATVCAGTLALLDAGIK-------------ISSPVSGIAMGLISDEKTGK 480 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T +G I Q + S D LN AK+ + Sbjct: 481 YAILSDILGDEDHLGDMDFKVTGTKNG-ITACQMDLKVNGLSYDVLTEALNQAKEGRLHI 539 Query: 231 IKLQKDVISNE 241 + IS Sbjct: 540 LGEMAKTISEP 550 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I + K A+GS +VK GDT LL T E V + + A G + Sbjct: 16 RIIEIETGKLAKQADGSVVVKQGDTMLLATVVSNKDAREGVDFLPLSVDYQEKYAASGRI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++REA R I R++ RALR + Q++I +I +D Sbjct: 76 P---GGFLRREA---RLSDYEVLISRLVDRALRPLFPEDYHAETQVMIS--LISSDENI- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G ++ + + G +++ + Sbjct: 127 ----------MPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPSRTDLERAT 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ V I V+G E + + A + I + +QK+ Sbjct: 177 LEF-IVAGSEKDINMVEG--ESNEIQEAELVEAIQFAHEAIKKQVAVQKE 223 >gi|16768780|gb|AAL28609.1| LD03255p [Drosophila melanogaster] Length = 720 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 17/250 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR +Q+R IS + K GS L + G T + T +L+ + ++ Sbjct: 303 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 362 Query: 57 GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 G + A Y P +TG + G G R + R+L + Sbjct: 363 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRREMGHGALAERSLLPTLPND--YPFT 416 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 + + +V++++G + A++ G +AL D + + + V K + + Sbjct: 417 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 475 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G +Q + L A D ++++ Sbjct: 476 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 534 Query: 232 KLQKDVISNE 241 + + I Sbjct: 535 DIMSEAIREP 544 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 29/223 (13%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPRSTGNRVKREAV 79 ++A G+ + + GDT ++ TA V N G+ + +Y + ++G R+ + Sbjct: 10 RFANGTAVCQMGDTAVMVTA-----VAKAKPNPGQGFMPLVVDYRLKNAASG-RIPMNFM 63 Query: 80 SGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 G +EI R+I R+LR + Q++ + + A AI A +AL Sbjct: 64 RRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAINAASMAL 123 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G + A+ G+ G +++ E T +D T Sbjct: 124 S-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATKQN 170 Query: 198 HIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236 +V ++G + Q + A+ I ++ +LQK Sbjct: 171 LVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 211 >gi|317487420|ref|ZP_07946208.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia 3_1_6] gi|316921352|gb|EFV42650.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia 3_1_6] Length = 745 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 87/245 (35%), Gaps = 27/245 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I + + A GS L G+T L TL ++ G +T Sbjct: 323 RIDGRDTKTVRPIEIQPGILPRAHGSALFTRGETQSLCVTTLGSSTDNQRMDSLTGDVTK 382 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G E R R + +AL+ ++ + + + Sbjct: 383 TFMLHYNFPPFSVG-----EVKPVRVSRREIGHGALAEKALKPIIPAGDGFPFTVRVVAE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 ++++G + AA+ G ++L D + VA ++ G++ Sbjct: 438 TLESNGSSSMAAVCGGCLSLMDAGV-------------PISDPVAGVAMGLIKEGDNFIV 484 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED+ D+D T G + VQ + + + + A + ++ Sbjct: 485 LTDILGDEDALGDMDFKIAGTAEG-VTAVQMDIKITGLTTEIMRKAMRQAHEARLHILGE 543 Query: 234 QKDVI 238 K I Sbjct: 544 MKKAI 548 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 79/230 (34%), Gaps = 33/230 (14%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYG----M 65 EI L V+ A GS ++ G T +L T + G+ +T EY Sbjct: 18 EIILETGRVATQAHGSVTIQCGGTVVLVTVC------SQPLDFDRGFFPLTVEYSERMYA 71 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 R G+ +RE GR R + R+I R +R + Q++ + + Sbjct: 72 AGRIPGSFFRREI--GRPSERETLVSRLIDRPIRPLFPKGLPEDVQVLASVISSDQENES 129 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 +IT A A+ VA G + G I++ E Sbjct: 130 DVLSITAASAAV-------------MLSPLPFAEAVAGGRIGRINGQFILNPTVKE--MA 174 Query: 186 DVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + D N V S +V V+G E +D L + I L++ Q Sbjct: 175 ESDLNIVFAASADALVMVEG--EATFVPEDVIIDALEWGRKEIQPLVEAQ 222 >gi|328676680|gb|AEB27550.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida Fx1] Length = 693 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I++ V GS L G+T L TL + + G Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376 Query: 62 E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + + Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIKEH 547 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D VA + G G I++ + + D+D Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 TD I+ V+ +E + + + A + +I Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|297172161|gb|ADI23142.1| hypothetical protein [uncultured gamma proteobacterium HF0770_09E07] Length = 442 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 92/250 (36%), Gaps = 28/250 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR ++R+I++ GS L G+T + T TL + ++ Sbjct: 66 RIDGRGMTEVRDITIETNFLPSVHGSALFTRGETQAIVTTTLGSGRDVQTVDALQGEIKD 125 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIIDC 116 Y S G R+ G + R+L+ V L I + Sbjct: 126 NFMLHYNFPSYSVGELGFPMGPKRREIGHG----ALAKRSLKFGVPSLEDFP-YAIRVVS 180 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G +AL +K +VA ++ G++ Sbjct: 181 EITESNGSSSMASVCGGSLALMAAGV-------------PIKENVAGVAMGLIKEGDKYE 227 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G + +Q + +++ L AKD +++ Sbjct: 228 VLTDILGDEDHLGDMDFKVAGTKNG-VTGLQMDIKIEGINEEILEKALMQAKDARMHILE 286 Query: 233 LQKDVISNEV 242 V+S + Sbjct: 287 KMDAVLSKPL 296 >gi|318040477|ref|ZP_07972433.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. CB0101] Length = 715 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 REI LT + A GS +V+ GDT +L TAT E + + G +P Sbjct: 13 REIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ ++RE+ R R+ I R+I R +R + QI+ C + Sbjct: 73 ---GSFMRRES---RPPERATLIARLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA +A G +AA+ G+L +++ Y E D+ Sbjct: 127 LAVTGASLATLLA-------------KIPFHGPMAAVRVGLLGDDFVLNPSYREIERSDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T G ++ V+ A + + ++ + + +LIK Q+ ++ Sbjct: 174 DLVVAGTPEG-VIMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQQALLKE 223 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 R+ GR +++R IS V K GS L + G T +L+ ATL + + Sbjct: 323 RVDGRNLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVLSCATLGTPSDAQEMDDLNPSNE 382 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + R+ G + RAL V+ + + Sbjct: 383 KTYLHHYNFPPYSTGETKPMRSPGRREIGHG----ALAERALIPVLPSKESFPYVLRVVS 438 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 + + ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 439 ECLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGKEVR 485 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I +Q + +N A+ +++ Sbjct: 486 ILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLEVKTVAEAINQARPARLHILE 544 Query: 233 LQKDVISNE 241 + I Sbjct: 545 KMLEAIEKP 553 >gi|302763984|ref|XP_002965413.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii] gi|300166227|gb|EFJ32833.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii] Length = 705 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 15/240 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56 +R+ GR +R++ + GS L G+T +L T TL E I Sbjct: 315 IRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPPK 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG-SRQIIID 115 Y P S K ++ R+ G + +AL +++ + ++ Sbjct: 375 KRFMVHYSFPPFSVNEVGKVGGLNRREVGHGT----LAEKALVALLPPEDENFPYSVRVN 430 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V+ +DG + A + G +AL D ++ + L +V A + + + Sbjct: 431 SEVMASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVG--LITNVDAETGEIKNYKILT 488 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN---LAKDRIADLIK 232 D+ ED D+D T G + +Q + L +A+ +I DL++ Sbjct: 489 DILGLEDHLGDMDFKIAGTKKG-VTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLME 547 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 34/237 (14%) Query: 14 ISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++ A G+ + G+T +L T +E + EY + G Sbjct: 15 LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDE---RLDAGRDFMPLQVEYREKSYAQGK 71 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 ++RE G R R+I R++R + QI+ + V+ +DG Sbjct: 72 IPNTFMRRE---GAPKERELLCGRVIDRSIRPLFPKGYYFETQIMAN--VLSSDGEQD-- 124 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 D L + G + + G + G +V+ D D+ D Sbjct: 125 ---------PDILAANAASAALALSDVPWNGPIGVVRIGRVDGKFVVNPDM--DTLSGSD 173 Query: 189 ANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N + + ++E Q + F A L LA + LI+ Q+ ++ +V Sbjct: 174 LNLIYSCTAERSLMIETQA----REITNKDFTAALKLAHSEASKLIEPQRR-LAAKV 225 >gi|329120747|ref|ZP_08249409.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327460544|gb|EGF06880.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 701 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 95/241 (39%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I++ V GS L G+T L TL +E++ + Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVTTLGTQRDEQIIDALSGEYTD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G R+ RAL +V+ S + + + Sbjct: 376 RFMLHYNFPPYSTGECGRMGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G ++L ++ + +L+G+ A+ + D+ Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AK+ ++ K+ Sbjct: 483 LGDEDHLGDMDFKVAGTTDG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMKEA 541 Query: 238 I 238 + Sbjct: 542 V 542 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ V GDT +L T ++V + + T G +P Sbjct: 16 VTLETGEIARQAAGAVKVAMGDTVVLVAVTANKEVKAGQDFFPLTVDYLERTYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE G+Q + R+I R +R + QI+ + + + Sbjct: 75 --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ + +D Sbjct: 130 AMIGASAALV-------------LSGVPFAGPIGAARVGYVDGGYVLNPTKTQLEKSQLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T+ ++ +E +D + +++ +I+ + +++EV Sbjct: 177 LVVAGTEQAVLMV---ESEAQILPEDVMLGAVVYGHEQMQAVIRAINE-LADEV 226 >gi|237722890|ref|ZP_04553371.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4] gi|229447412|gb|EEO53203.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4] Length = 708 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S D LN AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYDILERALNQAKEGRMHIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 NKITETIAEP 548 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57 GR I+L K A+GS +++ G+T LL T ++ VP ++ Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A +G P G KRE GR R++ RALR + + ++ ++ Sbjct: 66 EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ADG V + D L + + G ++ + + G +++ Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + D+D T +I+ V+G E S+ + +A + I K Q + Sbjct: 167 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKIHCKAQME- 222 Query: 238 ISNEV 242 ++ EV Sbjct: 223 LTEEV 227 >gi|237713950|ref|ZP_04544431.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1] gi|262409141|ref|ZP_06085685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22] gi|294647465|ref|ZP_06725048.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC 2a] gi|294808931|ref|ZP_06767656.1| polyribonucleotide nucleotidyltransferase [Bacteroides xylanisolvens SD CC 1b] gi|229446106|gb|EEO51897.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1] gi|262352888|gb|EEZ01984.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22] gi|292637175|gb|EFF55610.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC 2a] gi|294443866|gb|EFG12608.1| polyribonucleotide nucleotidyltransferase [Bacteroides xylanisolvens SD CC 1b] Length = 708 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S D LN AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYDILERALNQAKEGRMHIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 NKITETIAEP 548 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57 GR I+L K A+GS +++ G+T LL T ++ VP ++ Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A +G P G KRE GR R++ RALR + + ++ ++ Sbjct: 66 EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ADG V + D L + + G ++ + + G +++ Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + D+D T +I+ V+G E S+ + +A + I K Q + Sbjct: 167 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKIHCKAQME- 222 Query: 238 ISNEV 242 ++ EV Sbjct: 223 LTEEV 227 >gi|150389523|ref|YP_001319572.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470926|sp|A6TNZ5|PNP3_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 3; AltName: Full=Polynucleotide phosphorylase 3; Short=PNPase 3 gi|149949385|gb|ABR47913.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 702 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R R+ +++R IS + A G+ L G+T +LT TL + + Sbjct: 311 IRPDNRKLDEIRPISTQVGILPRAHGTGLFNRGETQVLTITTLGDLRDAQRIDGIGEEDE 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G S R+ G ++ RAL ++ I + Sbjct: 371 KRYMHHYNFPPYSVGETRFMRGPSRREIGHG----ALVERALLPMIPSKEDFPYAIRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPI 174 +V+ +G + A++ G+ ++L D +K VA I+ G++ + Sbjct: 427 EVLTCNGSSSQASVCGSTLSLMDAGV-------------PIKRMVAGIAMGLIKEDDQVV 473 Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T+ G I +Q + A + L A+ ++ Sbjct: 474 ILSDIQGMEDALGDMDLKVAGTEEG-ITAMQMDIKIAGIDRGIMETALEQARIGRLHILN 532 Query: 233 LQKDVISNE 241 K+ I++ Sbjct: 533 KMKESITSP 541 Score = 84.8 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 31/228 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + V++ A+GSC++K+GDT +L TA +E + + + + G + Sbjct: 12 RPFVVEIGKVAELAQGSCMIKYGDTTVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE+ R ++ R+I R +R + Q+I + D Sbjct: 72 P---GGFIKRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSMDQDCPPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD--YGEDST 184 +A+ G+ +AL + G A++S GM+ G IV+ EDST Sbjct: 126 ISAMIGSSIALS-------------VSNIPFMGPTASVSVGMIDGEYIVNPTSKQKEDST 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ V I+ ++ A ++ + A + I ++ Sbjct: 173 LE---LIVSGTKNAIMMIEAGANE--LTEAQILDAIMFAHEEIKKIVA 215 >gi|331006254|ref|ZP_08329574.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium IMCC1989] gi|330419943|gb|EGG94289.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium IMCC1989] Length = 742 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 91/247 (36%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V A GS L G+T + ATL I + G Sbjct: 315 RIDGRDTTTVRGIDVEVGVLNKAHGSSLFTRGETQAIVVATLGNARDSQIIDALEGERRD 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + + S R+ G R+ R + +V+ I I + Sbjct: 375 PFMLHYNFPSYSVGECGRMGSTSRREIGHG----RLARRGVAAVLPTQEDFPYTIRIVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +A+ D LK VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLAMMDAGV-------------PLKAPVAGIAMGLVKEESGFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L A ++ Sbjct: 478 LTDILGDEDHLGDMDFKVAGTAAG-ITALQMDIKIEGITEEIMEIALGQALQARLHILAE 536 Query: 234 QKDVISN 240 VIS Sbjct: 537 MNKVIST 543 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 28/226 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ LV G T +L T EE + + + G +P Sbjct: 15 VTLETGRVARQATGAVLVSIGKTQVLCTVVGAKQAEEGRGFFPLSVHYVEKAYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KREA R + R+I R +R + + Q++ + D A Sbjct: 74 --GGFFKREA---RPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCMVVSAENDVDPDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187 A+ G AL G + G +++ Y + ++ Sbjct: 129 AMIGTSAALSISGI-------------PFNGPIGGARVGYTQEAGYVLNPSYSALAESEL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D T ++ +E + +D + A +++ Sbjct: 176 DMVVAGTKDAVLMV---ESEASELPEDIMLGAVLFAHQECQAVVQA 218 >gi|299771757|ref|YP_003733783.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1] gi|298701845|gb|ADI92410.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1] Length = 697 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I + V A GS L G+T L T TL + TK Sbjct: 317 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538 Query: 234 QKDVIS 239 VIS Sbjct: 539 MNKVIS 544 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 43/237 (18%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++ L V++ A + L+ G +L P +T Y + G Sbjct: 17 QVVLETGRVARQAN-TVLITMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 72 Query: 72 NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123 + G++ GR+ E I R+I R +R + Q+ + AD Sbjct: 73 ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDAD- 128 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AA+ G AL +G + G++ G +++ ++ + Sbjct: 129 ---IAAMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLK 172 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 D+D T+S ++ +E S+D + +A I + Sbjct: 173 ESDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226 >gi|293373410|ref|ZP_06619765.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CMC 3f] gi|298482234|ref|ZP_07000421.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22] gi|292631548|gb|EFF50171.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CMC 3f] gi|295085266|emb|CBK66789.1| polyribonucleotide nucleotidyltransferase [Bacteroides xylanisolvens XB1A] gi|298271521|gb|EFI13095.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22] Length = 708 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S D LN AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYDILERALNQAKEGRMHIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 NKITETIAEP 548 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57 GR I+L K A+GS +++ G+T LL T ++ VP ++ Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A +G P G KRE GR R++ RALR + + ++ ++ Sbjct: 66 EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ADG V + D L + + G ++ + + G +++ Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + D+D T +I+ V+G E S+ + +A + I K Q + Sbjct: 167 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKIHCKAQME- 222 Query: 238 ISNEV 242 ++ EV Sbjct: 223 LTEEV 227 >gi|134302408|ref|YP_001122378.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis subsp. tularensis WY96-3418] gi|187610267|sp|A4IZA6|PNP_FRATW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|134050185|gb|ABO47256.1| putative polyribonucleotide nucleotidyltransferase [Francisella tularensis subsp. tularensis WY96-3418] Length = 693 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I++ V GS L G+T L TL + + G Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376 Query: 62 E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + + Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIKEH 547 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAVAPDILAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D VA + G G I++ + + D+D Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 TD I+ V+ +E + + + A + +I Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|315122006|ref|YP_004062495.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495408|gb|ADR52007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 699 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR +R+IS + + GS G T + TL K + T+ Sbjct: 312 IRMDGRDVETVRDISAQVGLLQRTHGSSFFSRGSTQAIVVVTLGTKEDEQYVDSLAGTQR 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A S R+ G R+ RA+ ++ +A + I Sbjct: 372 NDFMMHYNFFPFSVGEVGRIGAPSRREIGHG----RLARRAIHPILPQAAQFPYTLRIVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ ++G + A + GA +AL D + VA I+ G++ Sbjct: 428 EITGSNGSSSMATVCGASLALMDAGV-------------PISKPVAGIAMGLVKEDDQFV 474 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED +D TDSG I +Q + S+D L K ++ Sbjct: 475 VLSDISGEEDHFGHMDFKVSGTDSG-ITAMQMDMKIRGISKDIIMVALQQGKRGRLHILN 533 Query: 233 LQKDVISN 240 VIS Sbjct: 534 EMSKVISE 541 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 34/230 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + L +++ ++G+ L +G+T +L T + ++ +T Y + Sbjct: 14 RPLKLETGRIAQQSDGAVLATYGETVVLATVVFDR---NLKKDQDFFPLTVNYQERTYAV 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 G ++RE+ R I RMI R++R + Q+II+ V+Q D Sbjct: 71 GKIPGGYLRRES---RPTENEVLISRMIDRSIRPLFPKHYKNETQVIIN--VMQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ AL +G +A + +++ + Sbjct: 126 PHVVSMVAVSAAL-------------MLSGLPFEGPIAGAQVDYVDDKYVLNPPLDGEK- 171 Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T + VE+ E S+D + +I+ Sbjct: 172 GSLDLFVSGTRDAVLMVEL----EANQLSEDVVLDAIMFGHAECKPVIEA 217 >gi|241668881|ref|ZP_04756459.1| polynucleotide phosphorylase/polyadenylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877413|ref|ZP_05250123.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843434|gb|EET21848.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 693 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 88/245 (35%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I++ V GS L G+T L TL + + Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKS 376 Query: 58 WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + I Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRIVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ L A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARTGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIREH 547 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGSFSPDMLAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D +A + G G I++ + E D+D Sbjct: 131 IGASASLAISGAPYDDI-------------IAGVRVGYTNGKYILNPNKEELKESDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 TD I+ V+ +E + + + A + +I Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|188994656|ref|YP_001928908.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas gingivalis ATCC 33277] gi|188594336|dbj|BAG33311.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 774 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 24/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 RL GR+ ++R I + GS + G+T LTT TL K + + + Sbjct: 349 RLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 408 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ ++ + + D Sbjct: 409 RFLLHYNFPPFSTGEARPQRGVGRREIGHG----NLAHRALKRMIPTD--YPYVVRVISD 462 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 +++++G + A + +AL D + + + IS Y I+ D Sbjct: 463 ILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMG--------LISENQGKNYAILSD 514 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232 + ED D+D T G I Q + S + L AK + +++ Sbjct: 515 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIME 573 Query: 233 LQKD 236 Q + Sbjct: 574 AQPE 577 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 21/227 (9%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69 R I + K A+G+ V G+T LL T ++ P +Y + R Sbjct: 46 RSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGRF 105 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +RE G+ R++ RALR + + ++ ++ + ADG Sbjct: 106 PGGFTRRE---GKASDYEILTCRLVDRALRPLFPDN--YHAEVFVNVILFSADG------ 154 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + D L + + G ++ + + G IV+ + + D+D Sbjct: 155 -----EDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDL 209 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V +I+ V+G E + + +A + I K Q + Sbjct: 210 -MVGATMDNIMMVEG--EMDEVQESEMLEGIRVAHEAIKVQCKAQLE 253 >gi|1588265|prf||2208281A 100RNP protein Length = 779 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 90/252 (35%), Gaps = 33/252 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R GR +R I+ + A GS L G+T L TL +K +T G Sbjct: 435 RSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDES 494 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G + RAL ++ + ++ Sbjct: 495 KRFYLQYSFPPSCVGEAGRVGAPSRREIGHGT----LAERALEPILPSEDEFPYTVRVES 550 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 ++ +++G + A++ G +AL D +K +A I+ GM+ Sbjct: 551 NITESNGSSSMASVCGGSLALLDAGV-------------PVKCPIAGIAMGMVLDTKEFG 597 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D + Q + + L AKD Sbjct: 598 GDGTPLILSDITGSEDASGDMDFKVAGNADC-VTAFQMDIKVGGITLSVMKQALLQAKDG 656 Query: 227 IADLIKLQKDVI 238 ++ + Sbjct: 657 RKIILAEMSKCL 668 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 30/231 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I + + A G+ V G+T + TT E + + + + Sbjct: 85 RHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNYQE---RFSAA 141 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 R++G KRE GR + R+I R LR+ + QI+ V+ DG Sbjct: 142 GRTSGGFFKRE---GRPKDNEVLVCRLIDRPLRTTMLKGFYHETQIL--SWVLSYDG--- 193 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L VA + G++ G IV+ E + Sbjct: 194 --------LHPPDALAVTAAGIAVALSELFHTKPVAGVRVGLVGGKYIVNPTTNEMENSE 245 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +D TDS I+ ++G ++ + + +D + + K+V Sbjct: 246 LDLVVAGTDSA-ILMIEG--YCNFLPEEKLLEAVEVGQDAVR---AICKEV 290 >gi|78048389|ref|YP_364564.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924695|ref|ZP_08186133.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas perforans 91-118] gi|123730263|sp|Q3BRP9|PNP_XANC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78036819|emb|CAJ24512.1| polynucleotide phosphorylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544901|gb|EGD16246.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas perforans 91-118] Length = 704 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS V GS L G+T + TL + + G Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPTLEEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536 Query: 233 LQKDVISNE 241 ++ Sbjct: 537 EMAHALTTP 545 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +VKF DT LL TA + E + + G +P Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL KG + A G G I++ E ++ Sbjct: 129 ALIGASAALSLAGT-------------PFKGPIGAAKVGYKNGEYILNPTVTELKDSQLE 175 Query: 189 ANFVMTDSGHIV 200 T + ++ Sbjct: 176 LVVAGTANAVLM 187 >gi|188589111|ref|YP_001920624.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum E3 str. Alaska E43] gi|251780820|ref|ZP_04823740.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226702637|sp|B2V4H5|PNP_CLOBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|188499392|gb|ACD52528.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E3 str. Alaska E43] gi|243085135|gb|EES51025.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 704 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R GR +Q+R + + G+ L G T ++T AT + ++ I + Sbjct: 312 RPDGRAFDQVRPLGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAVGDIQILDGIDEAQSK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ I + + Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + ++ + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLS-------EEQVLTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + FS + + A+ +++ + Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLKGFSFNVVENAIRDARKARMTILEKINEC 539 Query: 238 ISNE 241 IS+ Sbjct: 540 ISSP 543 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 76/214 (35%), Gaps = 26/214 (12%) Query: 31 KFGDTHLL--TTATLEEKV--PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGR 86 +GDT +L A+ E +V + + ++ G +P G +KRE GR + Sbjct: 32 SYGDTVILTNVNASSEPRVGIDFFPLSVEYEERLYAVGKIP---GGFIKRE---GRPSEK 85 Query: 87 SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146 + R + R LR + Q++ ++ D AI A +AL Sbjct: 86 AILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAINAASMALC-------- 137 Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206 S VAA+ G++ IV+ + E + T ++ ++ Sbjct: 138 -----LSSIPFAMPVAAVQVGLIDNNFIVNPNATEREESTLHLTVCATKE-RVMMIEAGG 191 Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D A + D ++I Q++ + Sbjct: 192 NEIP--EDIMIAAIKFGFDECQNIINFQEEAVKK 223 >gi|160883669|ref|ZP_02064672.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483] gi|156111082|gb|EDO12827.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483] Length = 752 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 363 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 422 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 423 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 476 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 477 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 523 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + LN AK+ ++ Sbjct: 524 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 582 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 583 GKITETIAEP 592 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57 GR I+L K A+GS +++ G+T LL T ++ VP ++ Sbjct: 56 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 109 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A +G P G KRE GR R++ RALR + + ++ ++ Sbjct: 110 EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 161 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ADG V + D L + + G ++ + + G +++ Sbjct: 162 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 210 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + D+D T +I+ V+G E S+ + +A + I K Q + Sbjct: 211 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKVHCKAQME- 266 Query: 238 ISNEV 242 ++ EV Sbjct: 267 LTEEV 271 >gi|320527320|ref|ZP_08028505.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei F0204] gi|320132344|gb|EFW24889.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei F0204] Length = 752 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R GR +++R + + GS + G+T +L+ TL + + Sbjct: 330 IRPDGRGLDELRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGPLSDAQLIDDLTTETE 389 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G V R + GR R + RAL V+ + I Sbjct: 390 KRFMHQYNFPPFSVGE-VGRMSSPGR---REIGHGALGERALLQVLPTAEEFPYAIRTCA 445 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A+I ++L ++ + + G +I + D Sbjct: 446 EVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTYSI---------LTD 496 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T +G I +Q + S++ L A +++ + Sbjct: 497 IQGMEDHYGDMDFKVAGTRNG-ITALQMDIKVTGISEEILREALAQAHKGRMEILDNMET 555 Query: 237 VISNE 241 IS Sbjct: 556 AISTP 560 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R +++ ++K A GS ++++ DT +L+TAT + + + G +P Sbjct: 25 RTLTVENGEIAKQAGGSVVIRYADTTVLSTATANNQAKDTDFFPLTVLYQEKMYAAGKIP 84 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR + R+I R +R + QI+ D + Sbjct: 85 ---GGFTRRE---GRPTEHATLTARLIDRPIRPLFAEGFRNEVQIVNTVLSCDPDASSEM 138 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A++ G+ +AL G VA + + G I++ ++ D+ Sbjct: 139 ASLFGSSLALC-------------ISDIPFNGPVAGVMVARVDGEYIINPSVEQEKNSDL 185 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T + I V+ A+ S++ L + D I +L +Q++VI+ Sbjct: 186 NVTVAGTKNA-INMVEAGAKE--VSEEDMLKALMIGHDAIKELCAIQEEVIA 234 >gi|260558389|ref|ZP_05830585.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium C68] gi|260075563|gb|EEW63869.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium C68] Length = 708 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 539 Score = 92.1 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+ A ++ + + G +P Sbjct: 14 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 74 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ S++ L D I +L+ Q++++ Sbjct: 175 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 222 >gi|299147541|ref|ZP_07040605.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23] gi|298514328|gb|EFI38213.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23] Length = 752 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 363 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 422 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 423 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 476 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 477 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 523 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + LN AK+ ++ Sbjct: 524 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 582 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 583 GKITETIAEP 592 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57 GR I+L K A+GS +++ G+T LL T ++ VP ++ Sbjct: 56 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 109 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A +G P G KRE GR R++ RALR + + ++ ++ Sbjct: 110 EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 161 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ADG V + D L + + G ++ + + G +++ Sbjct: 162 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 210 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + D+D T +I+ V+G E S+ + +A + I K Q + Sbjct: 211 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKIHCKAQME- 266 Query: 238 ISNEV 242 ++ EV Sbjct: 267 LTEEV 271 >gi|226313012|ref|YP_002772906.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis NBRC 100599] gi|254782708|sp|C0ZF43|PNP_BREBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226095960|dbj|BAH44402.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis NBRC 100599] Length = 715 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 16/230 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR N++R +S + GS + G T L T A + ++ + + Sbjct: 317 VRPDGRALNEIRPLSSETTILSRTHGSAMFTRGQTQALSVCTLGALGDVQILDGLGLEES 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G G R + RA+ ++ I + Sbjct: 377 KRFMHHYNFPPYSVGEAR----PLRPPGRREIGHGALGERAIEPIIPSEVEFPYTIRLVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +VI+++G T A+I + +AL D ++ + ++ + S + D Sbjct: 433 EVIESNGSTSQASICASVLALMDAGVPIKAPVAGIAMGLIMSKDEKSFSI-------LTD 485 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED D+D T++G + +Q + + +++ L A+ Sbjct: 486 IQGMEDHLGDMDFKVAGTEAG-VTAIQMDIKISGINREILELALEQARVG 534 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R+++L K A GS LV++GDT +L+ T+ + + + + G +P Sbjct: 15 RKLTLEFGKMAKQAHGSVLVRYGDTAILSAVTVSKEPKPLDFFPLTVNYEERLYAVGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R +R + QI+ + D Sbjct: 75 ---GGFIKRE---GRPSEKAILASRLIDRPVRPLFAEGFRNDVQIVNTVLSVDQDCSPEI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G AL +G +A + G + G +++ + D+ Sbjct: 129 AAMIGTSAALC-------------VSEIPFEGPIAGVIVGRIDGEFVINPTVAQAEKSDI 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ +A + + + D I L++ Q ++S Sbjct: 176 HLTVAGTHKA-INMVEAAANQVP--EAIMLEAIMAGHDVIKQLVEFQNMIVSE 225 >gi|257439280|ref|ZP_05615035.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium prausnitzii A2-165] gi|257198155|gb|EEU96439.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium prausnitzii A2-165] Length = 714 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 30/243 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR N++R ++ + GS + G T +LTT TL + + T Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G G R + RAL V+ I + Sbjct: 382 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGALAERALVPVLPSLEEFPYTIRCVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V+ ++G T A+I G+ +AL D +K VA ISCG++ Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITEGDRWMT 484 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IAD 229 ++D+ ED D+D T G I +Q + + D + + + Sbjct: 485 MLDIQGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDE 543 Query: 230 LIK 232 +IK Sbjct: 544 IIK 546 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 31/227 (13%) Query: 12 REISLTRRV---SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYG 64 R + A S L+++G+T +L E V + N ++ G Sbjct: 25 RPFKVEMGKMCGLSNA--SALIRYGETCVLCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G+ ++RE GR G R+ R++ R +R + I + + D Sbjct: 83 RIP---GSFMRRE---GRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A + GA + G + + G++ G +++ + Sbjct: 137 PEIAGMIGASLVTA-------------VSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRKV 183 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 D+ T IV ++ A +D + A I +I Sbjct: 184 SDLALTVAAT-MDKIVMIEAGANE--VDEDTMLNAIKAAHVEIKKII 227 >gi|325955410|ref|YP_004239070.1| polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM 16922] gi|323438028|gb|ADX68492.1| Polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM 16922] Length = 721 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 85/253 (33%), Gaps = 34/253 (13%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR +R I + A GS + G+T L TL + Sbjct: 320 IRLDGRDPKTIRPIWTEVDILPGAHGSSVFTRGETQALAALTL--GSSRDANLVDGVVLN 377 Query: 61 AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 E Y P STG S R+ G + RAL ++ I + Sbjct: 378 HEERFFLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALTKMIPED--NPYVIRL 431 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V++++G + A + +AL D +K V+ I+ G++ Sbjct: 432 VSEVLESNGSSSMATVCAGTLALMDAGI-------------PIKKPVSGIAMGLITDTKS 478 Query: 172 ---YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 + D+ ED D+D T G I Q + S + L A++ Sbjct: 479 GKWTVLSDILGDEDHLGDMDFKVTGTKDG-ITACQMDIKVQGLSMEIMEKALEQAREGRL 537 Query: 229 DLIKLQKDVISNE 241 ++ + ++ Sbjct: 538 HILDKLTETLATP 550 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 29/236 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 REIS+ +K A+GS +V+ GDT LL T E V + G + Sbjct: 16 REISIETGKYAKQADGSVIVRMGDTMLLATVVANKEANEGVDFLPLTVDYREKFYAGGRI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P GN +REA + R++ R LR + Q++I Sbjct: 76 P---GNFFRREA---KPSDDEVLTMRLVDRVLRPMFPEDFHAEVQVMI------------ 117 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ + S ++ + ++ L G +++ + D Sbjct: 118 --SLISYDEKVMPEALAGLAASAAIAITDIPFTLISEARVIRLNGELMINPSREQLEQAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D V +V V+G E S+ + A + I I+ Q + ++ +V Sbjct: 176 IDI-MVGASKESVVMVEGEMEE--ISEREMLDAIQFAHEEIKKQIEAQ-ERLAEKV 227 >gi|294675841|ref|YP_003576456.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus SB 1003] gi|294474661|gb|ADE84049.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus SB 1003] Length = 717 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 93/247 (37%), Gaps = 27/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + GS L G+T L TL I + +G + Sbjct: 318 RIDGRDNKTVRPIVAEVGILPRTHGSALFTRGETQGLVVTTLGTGDDEQIIDALNGNFRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP- 173 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILESDGRWA 480 Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMQQALAQAKDGRMHILG 539 Query: 233 LQKDVIS 239 +S Sbjct: 540 EMSKALS 546 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 77/231 (33%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEAKPGQDFFPLTVHYQEKYYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + + R+I R R + ++++ V+ D Sbjct: 75 --GGFFKREA---RPSEKETLVSRLIDRPCRPLFVPGF--KNEVLVMATVLSCDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182 A+ A AL G + A G G +++ + Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGFAHGAYVLNPAMDDMTKLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E ++D + +++ +I L Sbjct: 175 DNPEQRLDLVIAGTKDAVMMVES-EAYELTEDEMLGAVKFGHEQMQPVIDL 224 >gi|118601810|ref|NP_001073074.1| exosome complex component RRP43 [Bos taurus] gi|122135904|sp|Q2KHU3|EXOS8_BOVIN RecName: Full=Exosome complex component RRP43; AltName: Full=Exosome component 8; AltName: Full=Ribosomal RNA-processing protein 43 gi|86826533|gb|AAI12882.1| Exosome component 8 [Bos taurus] gi|296481825|gb|DAA23940.1| exosome complex exonuclease RRP43 [Bos taurus] Length = 276 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKAEFGAPP-TDAPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + SG G +Q + I + ++ L G ++ Sbjct: 82 NVDLSPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISSGKLAWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSCLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGRLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +V + Sbjct: 256 VTRHKEVKKLMDEVFKS 272 >gi|282600044|ref|ZP_05972801.2| polyribonucleotide nucleotidyltransferase [Providencia rustigianii DSM 4541] gi|282566848|gb|EFB72383.1| polyribonucleotide nucleotidyltransferase [Providencia rustigianii DSM 4541] Length = 685 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + + G T Sbjct: 294 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 353 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A I + + Sbjct: 354 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSHADFPYTIRVVSE 409 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 410 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGNDFVV 456 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 457 LSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITREIMQVALNQAKGARLHILGT 515 Query: 234 QKDVISNE 241 + I+ Sbjct: 516 MEQAINGP 523 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 23/185 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++ A + +V DT + TA ++E + + T G +P G+ + Sbjct: 2 IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIP---GSFFR 58 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE GR G + R+I R LR + L QII + A+ GA Sbjct: 59 RE---GRPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASA 115 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL G + A G + +++ E + +D TD Sbjct: 116 ALA-------------LSGVPFNGPIGAARVGYINDQYVLNPTADELKSSRLDLVVAGTD 162 Query: 196 SGHIV 200 S ++ Sbjct: 163 SAVLM 167 >gi|187778995|ref|ZP_02995468.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC 15579] gi|187772620|gb|EDU36422.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC 15579] Length = 702 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 87/244 (35%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R GR +++R IS + G+ L G T ++T AT + ++ I + Sbjct: 312 RPDGRAFDEVRSISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEQESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ + I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSESEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + + I D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + A S L AK ++ K+ Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIKEC 539 Query: 238 ISNE 241 I Sbjct: 540 IPEP 543 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 86/236 (36%), Gaps = 31/236 (13%) Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64 R++ + + A + +GDT ++ A+ E + + + + G Sbjct: 12 RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVDYEERLYSVG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G +KRE G+ +S R I R LR + QI+ ++ D Sbjct: 70 KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI G+ +AL S VAA+S G++ G I++ + Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T ++ V+ + ++ + + + +++ Q++ ++ Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYNAIMFGFEECKNIVAFQEEAMAK 223 >gi|220929129|ref|YP_002506038.1| polynucleotide phosphorylase/polyadenylase [Clostridium cellulolyticum H10] gi|254782714|sp|B8I2R5|PNP_CLOCE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219999457|gb|ACL76058.1| 3' exoribonuclease [Clostridium cellulolyticum H10] Length = 703 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 88/238 (36%), Gaps = 23/238 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ +++R +S + GS L + G T +LTT TL + + + T Sbjct: 312 RIDGRRLDEIRTLSAEVGILPRTHGSGLFERGQTQVLTTVTLGAMGDVQMLDGIDTEETK 371 Query: 62 EYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M + EA + R G R + R+L V+ + +V+ Sbjct: 372 RY-MHHYNFPGYSVGEAKTSRGPGRREIGHGALAERSLVPVIPTETEFPYAFRLVSEVLM 430 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-------P 173 ++G T ++ G+ +AL D +K VA IS G++ Sbjct: 431 SNGSTSQGSVCGSTLALMDAGV-------------PIKAPVAGISAGLVIDEENPDNFVT 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 +D+ ED D+D T G I +Q + S + L + +I Sbjct: 478 FMDIQGIEDFFGDMDFKVAGTTEG-ITAIQMDIKVDGLSYEIIRQAFELTRMGRLQII 534 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 82/229 (35%), Gaps = 32/229 (13%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGML 66 R +++ A GS L+++GDT ++ +A + + + + + G + Sbjct: 12 RTLTVETGKLAQLANGSALIRYGDTVIMSSATASAAPRDGIDFFPLSVDYEERLYAVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + ++ ++ D Sbjct: 72 P---GGFIKRE---GKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMSVEQDNSPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA VA+ G + + G++ G I++ + E+ Sbjct: 126 IAAMIGASVAIS-------------ISDIPFNGPIGGVVLGLVDGEVIINPN--EEQRAK 170 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + + I ++ A+ M + K ++ K+ Sbjct: 171 SKMYVTLAGTKEKITMIEAGADIVP-----DDVMFDAIKKGHEEIKKIC 214 >gi|304320664|ref|YP_003854307.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula bermudensis HTCC2503] gi|303299566|gb|ADM09165.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula bermudensis HTCC2503] Length = 708 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + GS L G+T + ATL +E+ + T Sbjct: 316 RIDGRDTKTVRPIESEVGILPRTHGSALFTRGETQAIVVATLGTADDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R+V+ I + + Sbjct: 376 NFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVRAVLPSQEEFPYVIRLVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G+ +A+ D ++ + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGEQFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + A +++ L AKD ++ Sbjct: 483 LGDEDHLGDMDFKVAGTSEG-VTSLQMDIKVAGITEEIMQTALGQAKDGRMHILGEMNKA 541 Query: 238 IS 239 +S Sbjct: 542 LS 543 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 74/226 (32%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T +++ + + T G + Sbjct: 14 RPLTLETGRIARQADGAVLATYGETTVLATVVGQKEAKPGQDFFPLTVNYQEKTYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + Q++ + Sbjct: 74 P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFAPGFKNEVQVVCTVMSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G + A G +V+ D Sbjct: 128 VVAMIAASAALTISGI-------------PFMGPIGAARVAYKDGEYLVNPTGA-DLEGS 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + VM + V + S E S+D + ++I Sbjct: 174 -RLDLVMAGTADAVMMVES-EADELSEDIMLGAVIKGHAAAKEMID 217 >gi|283850795|ref|ZP_06368081.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. FW1012B] gi|283573718|gb|EFC21692.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. FW1012B] Length = 762 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56 +RL GR +R I + V GS L G+T L A T +E+ + + Sbjct: 320 IRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLGSTGDEQKIETLNGETY 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G S R G + R++ V+ + + Sbjct: 380 KRFMLHYNFPPYCVGEVKMLRGPSRRDIGHG----ALAERSVLPVLPGPEEFPFTMRVVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 V++++G + A++ GA +AL D +K VA I+ G++ Sbjct: 436 QVMESNGSSSMASVCGASLALMDAGV-------------PIKQPVAGIAMGLIKEGDDFL 482 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + Q LN AK+ ++ Sbjct: 483 ILTDILGDEDAMGDMDFKVAGTADG-ITGIQMDIKITGIPQAVMRQALNQAKEARLHILG 541 Query: 233 LQKDVIS 239 +V++ Sbjct: 542 RMAEVLA 548 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 28/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69 I L ++ A+G+ ++ G T +L TA L E+ + + ++ G +P Sbjct: 19 IILETGRLANQADGAVWIQSGGTVVLVTACTQALAEEKGFFPLVVDYQEMSYAAGRIP-- 76 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRT 127 G+ +RE GR R + R+I R R + QII V+ ADG Sbjct: 77 -GSYFRREI--GRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIAT--VLSADGQVEPDV 131 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+T A ALH ++ + V + M+ +++L + Sbjct: 132 LALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNLTF----AASR 187 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 DA ++ G V S+D L + L+ LQ+++ Sbjct: 188 DAVVMVEGGGRFV-----------SEDLLADALEWGHKAVQPLLDLQEEM 226 >gi|269103403|ref|ZP_06156100.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163301|gb|EEZ41797.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 706 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R + + V GS L G+T L TATL + + K Sbjct: 314 RIDGREVDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y P G + R+ G R+ R + +V+ + + + Sbjct: 374 YFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSIDEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD G I +Q + +++ LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARMHILSV 535 Query: 234 QKDVIS 239 + I+ Sbjct: 536 MDNAIN 541 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 63/212 (29%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT + + + E + + T G +P Sbjct: 15 VTLETGVMARQATAAVMASMDDTSVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + + Sbjct: 74 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPNVSPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + +++ E +D Sbjct: 129 TMIGTSAALAISGI-------------PFNGPIGAARVGFINDQFVLNPSNVELEESRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T ++ +E S++ + Sbjct: 176 LVVAGTKDAVLMV---ESEADRLSEEQMLQAV 204 >gi|238760238|ref|ZP_04621383.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236] gi|238701561|gb|EEP94133.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236] Length = 706 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 20/245 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + I + + Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 + +++G + A++ GA +AL D ++ + V K + ++ D Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKKD----------DNFVVLSD 480 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D + G I +Q + +++ LN AK ++ + + Sbjct: 481 ILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539 Query: 237 VISNE 241 IS Sbjct: 540 AISTP 544 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T + ++ +E S+D + Sbjct: 177 LVVAGTAAAVLMV---ESEAQILSEDQMLGAV 205 >gi|257885733|ref|ZP_05665386.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,501] gi|257821589|gb|EEV48719.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,501] Length = 708 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 539 Score = 90.2 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+ A ++ + + G +P Sbjct: 14 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 74 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ S+ L D I +L+ Q++++ Sbjct: 175 ELTVAGTKQA-INMVESGAKE--VSEKDMLGALLFGFDAIKELVAFQEEIV 222 >gi|1924972|gb|AAC49669.1| polyribonucleotide phophorylase [Spinacia oleracea] Length = 822 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 90/252 (35%), Gaps = 33/252 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R GR +R I+ + A GS L G+T L TL +K +T G Sbjct: 437 RSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDES 496 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A S R+ G + RAL ++ + ++ Sbjct: 497 KRFYLQYSFPPSCVGEAGRVGAPSRREIGHGT----LAERALEPILPSEDEFPYTVRVES 552 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169 ++ +++G + A++ G +AL D +K +A I+ GM+ Sbjct: 553 NITESNGSSSMASVCGGSLALLDAGV-------------PVKCPIAGIAMGMVLDTKEFG 599 Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 G P++ D+ ED++ D+D + Q + + L AKD Sbjct: 600 GDGTPLILSDITGSEDASGDMDFKVAGNADC-VTAFQMDIKVGGITLSVMKQALLQAKDG 658 Query: 227 IADLIKLQKDVI 238 ++ + Sbjct: 659 RKIILAEMSKCL 670 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 30/231 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I + + A G+ V G+T + TT E + + + + Sbjct: 87 RHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNYQE---RFSAA 143 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 R++G KRE GR + R+I R LR+ + QI+ V+ DG Sbjct: 144 GRTSGGFFKRE---GRPKDNEVLVCRLIDRPLRTTMLKGFYHETQIL--SWVLSYDG--- 195 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L VA + G++ G IV+ E + Sbjct: 196 --------LHPPDALAVTAAGIAVALSELPHTKPVAGVRVGLVGGKYIVNPTTNEMENSE 247 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 +D TDS I+ ++G ++ + + +D + + K+V Sbjct: 248 LDLVVAGTDSA-ILMIEG--YCNFLPEEKLLEAVEVGQDAVR---AICKEV 292 >gi|298373282|ref|ZP_06983271.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon 274 str. F0058] gi|298274334|gb|EFI15886.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon 274 str. F0058] Length = 741 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR+ N++R I GS + G+T L+T TL K+ I + T Sbjct: 319 RLDGRKTNEIRPIWSEVDYLPATHGSAIFTRGETQSLSTVTLGTKLDEKIIDEALITGTD 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL+ V+ + I + D Sbjct: 379 RFLLHYNFPPFSTGEARPSRGVGRREVGHG----NLALRALKPVIPEN--YKYCIRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 +++++G + A + +AL D + V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGV-------------PISKPVSGIAMGLISENKGKNY 479 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L A + ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILENALRQAHEGRMHIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 GKITETIAEP 548 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 30/237 (12%) Query: 6 RQENQM---REISLTRRVS-KYAEGSCLVKFGDTHLLTTA-TLEEKVP---MWIRNTKHG 57 R+ Q+ REI + K A+G+ +V G T LL T + +E P + + Sbjct: 5 RKTVQLPDGREIIIETGKLAKQADGAVMVTLGKTMLLATVCSAQEANPGTDFMPLSVDYK 64 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + G P G ++RE GR I R++ RALR + ++ Sbjct: 65 EKFSACGRFP---GGFLRRE---GRPSDYEILISRLVDRALRPLFPDDYHAET--FVNVT 116 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ADG V D L + + G ++ + + G +++ Sbjct: 117 LYSADG-----------VDAPDALAGLAASAALAVSDIPFGGPISEVRVARIDGEFVINP 165 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + D++ T +I+ V+G E S+D + A + I ++Q Sbjct: 166 TMEQLQNADLELIVAAT-LDNIMMVEG--EMKEVSEDVLLNAIKAAHEAIKPQCQVQ 219 >gi|209694194|ref|YP_002262122.1| polynucleotide phosphorylase/polyadenylase [Aliivibrio salmonicida LFI1238] gi|208008145|emb|CAQ78287.1| polyribonucleotide nucleotidyltransferase [Aliivibrio salmonicida LFI1238] Length = 718 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+++ +R + + V GS L G+T L TATL + I ++ G Sbjct: 325 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 384 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 385 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVEEFPYTVRVVSE 440 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 441 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 487 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 488 LSDILGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILTV 546 Query: 234 QKDVISN 240 + IS Sbjct: 547 MDEAISG 553 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 26 VTLETGVMARQATAAVMASMDDTSVFVSVVAKKEA---VAGQDFFPLTVNYQERTYAAGK 82 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + + Q+I I D Sbjct: 83 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 139 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + AL G + A G + G +++ E + +D Sbjct: 140 TMIATSAALSIAGV-------------PFNGPIGAARVGHINGELVLNPSNTELANSKLD 186 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T++ ++ +E S++ + + D+ +IK + Sbjct: 187 LVVSGTEAAVLMV---ESEADNLSEEEMLSAVVFGHDQQQVVIKAINE 231 >gi|328957265|ref|YP_004374651.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. 17-4] gi|328673589|gb|AEB29635.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. 17-4] Length = 717 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 87/240 (36%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R ++ + A GS L G T L+ AT E ++ + Sbjct: 333 IRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSIATLAPLGEHQIIDGLGIENS 392 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ S G R + RAL V+ I + Sbjct: 393 KRFIHHYNFPQYSVGS----TGPSRGPGRREIGHGALGERALAQVIPSEEDFPYMIRLVA 448 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 449 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVKEGENYT 495 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + +Q L AK +++ Sbjct: 496 VLTDIQGLEDHLGDMDFKVAGTSKG-ITALQMDIKIEGITQQILEEALTQAKKARMEILD 554 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 94/233 (40%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ L+++ DT +L+ A +K V + + G +P Sbjct: 29 RTLEIEVGQLAKQANGAALIRYNDTVVLSAAVASKKAKDVDFFPLTVNYDEKMYSVGKIP 88 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KREA R + R+I R +R + QI + + Sbjct: 89 ---GGFIKREA---RPSEAATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDQNCSPAF 142 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +A+ G+ ++L G +A++ G + G I++ +++ D+ Sbjct: 143 SAMFGSSLSLA-------------ISDIPFNGPIASVDVGRVDGEYIINPTLEQEALSDI 189 Query: 188 DANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T ++VE G+AE S++ L + I +L+ Q+++++ Sbjct: 190 HLTVAGTKDAINMVE-SGAAE---VSEEDMLGALMFGHEAIQELVAFQEEIVA 238 >gi|257887903|ref|ZP_05667556.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,141,733] gi|257893296|ref|ZP_05672949.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,408] gi|257896479|ref|ZP_05676132.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium Com12] gi|257899445|ref|ZP_05679098.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium Com15] gi|257823957|gb|EEV50889.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,141,733] gi|257829675|gb|EEV56282.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,408] gi|257833044|gb|EEV59465.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium Com12] gi|257837357|gb|EEV62431.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium Com15] Length = 708 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 539 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+ A ++ + + G +P Sbjct: 14 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 74 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ S++ L D I +L+ Q++++ Sbjct: 175 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 222 >gi|257878824|ref|ZP_05658477.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,230,933] gi|257881461|ref|ZP_05661114.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,502] gi|257890683|ref|ZP_05670336.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,410] gi|261207096|ref|ZP_05921785.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC 6] gi|289565902|ref|ZP_06446342.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium D344SRF] gi|293563621|ref|ZP_06678065.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1162] gi|257813052|gb|EEV41810.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,230,933] gi|257817119|gb|EEV44447.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,502] gi|257827043|gb|EEV53669.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium 1,231,410] gi|260078724|gb|EEW66426.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC 6] gi|289162275|gb|EFD10135.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium D344SRF] gi|291604421|gb|EFF33911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium E1162] Length = 708 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL V+ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 539 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L+ A ++ + + G +P Sbjct: 14 RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 74 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ S++ L D I +L+ Q++++ Sbjct: 175 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 222 >gi|325921391|ref|ZP_08183248.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas gardneri ATCC 19865] gi|325548149|gb|EGD19146.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas gardneri ATCC 19865] Length = 704 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS+ + GS L G+T + TL + + G Sbjct: 315 VRIDGRALDTVRPISVQAGILPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVSGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEDDRFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLYILG 536 Query: 233 LQKDVISNE 241 ++ Sbjct: 537 EMSKALTTP 545 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 80/228 (35%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +VKF DT LL TA + E + + G +P Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G G I++ E ++ Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTISELKDSQLE 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + ++ +E A S++ + + +I + + Sbjct: 176 LVVAGTANAVLMV---ESEAALLSEEVMLGAVTFGHRELQKVINVINE 220 >gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium prausnitzii L2-6] Length = 714 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 30/243 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR N++R ++ + GS + G T +LTT TL + + T Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G G R + RAL V+ I + Sbjct: 382 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGALAERALLPVLPSLEEFPYTIRCVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V+ ++G T A+I G+ +AL D +K VA ISCG++ Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITEGDRWMT 484 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IAD 229 ++D+ ED D+D T G I +Q + + D + + + Sbjct: 485 MLDIQGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDE 543 Query: 230 LIK 232 +IK Sbjct: 544 IIK 546 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 31/227 (13%) Query: 12 REISLTRRV---SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYG 64 R + A S L+++G+T ++ E V + N ++ G Sbjct: 25 RPFKVEMGKMCGLSNA--SALIRYGETCVMCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G+ ++RE GR G R+ R++ R +R + I + + D Sbjct: 83 RIP---GSFMRRE---GRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A + GA + G + + G++ G +++ + Sbjct: 137 PEIAGMIGASLVTA-------------VSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRRK 183 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 D+ T IV ++ A +D + A I +I Sbjct: 184 SDLALTVAAT-MDKIVMIEAGANE--VDEDTVLNAIKAAHVEIKKII 227 >gi|315637153|ref|ZP_07892375.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri JV22] gi|315478520|gb|EFU69231.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri JV22] Length = 725 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG- 57 +R GR +R IS+ + SCL G+T L T + M+ T Sbjct: 334 VRADGRGLKDVRPISIETNILPSTHSSCLFTRGETQALVIGTIAGPKDGQMYEVLTDKST 393 Query: 58 ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G V R+ G + +AL + +D + + + Sbjct: 394 SMENFMVHYNFPGFSVGEAKPMFGVGRRELGHG----NLAKKALEATIDKD--YNETVRL 447 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A + G +AL + D + V++ AI + Sbjct: 448 VSEILESNGSSSMATVCGGSLALKAAGIPISDLVAGVAMGMVVENDKYAI---------L 498 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D T G I +Q + L AK+ ++ L Sbjct: 499 TDIMGLEDHDGDMDFKVAGTSKG-ITALQMDIKLGGIELSVLKEALLQAKEGRTHILSLM 557 Query: 235 KDV 237 KD Sbjct: 558 KDA 560 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 28/191 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPRSTGNRVK 75 V+K + G+ L K G+ +L T E P+ T ++ T LP G +K Sbjct: 21 VAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKTYAAAKLP---GGFIK 77 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAAITGA 133 RE G+ R+I R+LR + + I + V+ AD T ++ A Sbjct: 78 RE---GKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITV--MVLSADKNVDLQTLSLNAA 132 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 AL+ + +K V + G + +++ + +D +V Sbjct: 133 NAALY-------------TSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDL-YVA 178 Query: 194 TDSGHIVEVQG 204 ++ ++ Sbjct: 179 GSKDELLMIEM 189 >gi|257096736|sp|B6ENE6|PNP_ALISL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 709 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+++ +R + + V GS L G+T L TATL + I ++ G Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILTV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMASMDDTSVFVSVVAKKEA---VAGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + + Q+I I D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + AL G + A G + G +++ E + +D Sbjct: 131 TMIATSAALSIAGV-------------PFNGPIGAARVGHINGELVLNPSNTELANSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T++ ++ +E S++ + + D+ +IK + Sbjct: 178 LVVSGTEAAVLMV---ESEADNLSEEEMLSAVVFGHDQQQVVIKAINE 222 >gi|157737429|ref|YP_001490112.1| polynucleotide phosphorylase/polyadenylase [Arcobacter butzleri RM4018] gi|187470965|sp|A8EU19|PNP_ARCB4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157699283|gb|ABV67443.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri RM4018] Length = 725 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG- 57 +R GR +R IS+ + SCL G+T L T + M+ T Sbjct: 334 VRADGRGLKDVRPISIETNILPSTHSSCLFTRGETQALVIGTIAGPKDGQMYEVLTDKST 393 Query: 58 ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G V R+ G + +AL + +D + + + Sbjct: 394 SMENFMVHYNFPGFSVGEAKPMFGVGRRELGHG----NLAKKALEATIDKD--YNETVRL 447 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A + G +AL + D + V++ AI + Sbjct: 448 VSEILESNGSSSMATVCGGSLALKAAGIPISDLVAGVAMGMVVENDKYAI---------L 498 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D T G I +Q + L AK+ ++ L Sbjct: 499 TDIMGLEDHDGDMDFKVAGTSKG-ITALQMDIKLGGIELSVLKEALLQAKEGRTHILSLM 557 Query: 235 KDV 237 KD Sbjct: 558 KDA 560 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 44/233 (18%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPRSTGNRVK 75 V+K + G+ L K G+ +L T E P+ T ++ T LP G +K Sbjct: 21 VAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKTYAAAKLP---GGFIK 77 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAAITGA 133 RE G+ R+I R+LR + + I + V+ AD T ++ A Sbjct: 78 RE---GKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITV--MVLSADKNVDLQTLSLNAA 132 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 AL+ + +K V + G + +++ + +D Sbjct: 133 NAALY-------------TSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAG 179 Query: 194 TD------------SGHIVEVQGSA-----ERATFSQDHFFAMLNLAKDRIAD 229 + S +VE+ A +D + A++ + + Sbjct: 180 SKEELLMIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKE 232 >gi|313619127|gb|EFR90919.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL S4-378] Length = 520 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 26/222 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ N++R +S + GS L G T L+ TL E ++ + ++ Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R A R+ G + RAL+ V+ I + Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I G+ +A+ D +K VA I+ G++ Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 + D+ ED D+D T G I +Q + S+ Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQ 519 Score = 95.2 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69 +S+ ++K A G+ L+++GDT +LT A + + G +P Sbjct: 16 LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE GR R+ R+I R +R + QI + D AA Sbjct: 74 -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + G+ VAL +G +A + G + G +++ + D+ Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S++ + + I L + Q+ +I+ Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223 >gi|294634519|ref|ZP_06713054.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC 23685] gi|291092033|gb|EFE24594.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC 23685] Length = 713 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 321 RIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 381 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPSQEEFPYTVRVVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 437 ITESNGSSSMASVCGASLALMDAGV-------------PVKAAVAGIAMGLVKEQDNFVV 483 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 484 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILSV 542 Query: 234 QKDVIS 239 + I+ Sbjct: 543 MEQAIN 548 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 28/234 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T E + + G P Sbjct: 22 VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERAYAAGRFP- 80 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR G I R+I R +R + L Q++ + Sbjct: 81 --GGFFRRE---GRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIV 135 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 136 AMIGASAALTLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKQSRLD 182 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 TD+ ++ +E S+D + D+ +I+ K ++ EV Sbjct: 183 LVVAGTDNAVLMV---ESEADLLSEDQMLGAVVFGHDQQQVVIENIK-ALAAEV 232 >gi|90022349|ref|YP_528176.1| polynucleotide phosphorylase/polyadenylase [Saccharophagus degradans 2-40] gi|122996024|sp|Q21H65|PNP_SACD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|89951949|gb|ABD81964.1| Polyribonucleotide nucleotidyltransferase [Saccharophagus degradans 2-40] Length = 722 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R + + V GS L G+T L +TL I + G Sbjct: 327 RIDGRDSKTVRPLHVEVGVLPKVHGSALFTRGETQALVVSTLGSARDAQIIDALEGERKD 386 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R + +V+ + + + Sbjct: 387 PFMLHYNFPPYSVGE-CGRMGATGR---REIGHGRLARRGIGAVLPKEEDFPYTMRVVSE 442 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D LK VA I+ G++ G+ + Sbjct: 443 ITESNGSSSMASVCGASLALMDAGV-------------PLKAPVAGIAMGLVKEDNGFAV 489 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A D ++ Sbjct: 490 LTDILGDEDHLGDMDFKVAGTADG-VTALQMDIKIEGITEEIMEIALGQAMDARLHILAE 548 Query: 234 QKDVISNE 241 VI++ Sbjct: 549 MNRVIASP 556 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 32/231 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ L G T +L T + + + + G +P Sbjct: 27 VTLETGRIARQASGAVLASMGQTSVLVAVTGSKEAKPGQDFFPLSVHYQEKAYAAGKIP- 85 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126 G KREA R + R+I R +R + L Q++ C VI A D Sbjct: 86 --GGFFKREA---RPSEKETLTSRLIDRPIRPLFPNGFLNEVQVV--CTVISAEKDVDPD 138 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 A+ G AL G + A G +++ Y T Sbjct: 139 IVAMIGTSAALAISGI-------------PFNGPIGAARVGYTQESGYLLNPTYSTLKTS 185 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D T ++ +E +D + A + +++ + Sbjct: 186 ELDMVVAGTADAVLMV---ESEAKELPEDIMLGAVLYAHQEMQAVVQAVAE 233 >gi|185535745|gb|ACC77873.1| polyribonucleotide nucleotidyltransferase [Staphylococcus xylosus] Length = 697 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 18/230 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R GR+ +++R + V A GS L G T L+ TL I + + Sbjct: 318 IRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGSMSEYQILDGLGEEEQ 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + R+ G + RAL ++ + I Sbjct: 378 KRFMHHYNFPNYSVGETGPVRSPGRREIGHG----ALGERALSHIIPDVKDFPYTVRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A+I G+ +AL D ++ + V + I + D Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED+ D+D T G I +Q + +++ L A+ Sbjct: 485 IQGMEDALGDMDFKVAGTSEG-ITAIQMDIKIDGLTKEIIKEALEQARVG 533 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TA + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLMVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G I++ + + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGEYIINPTVAQKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + I L+ Q++++ Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEGIFFGHSEIQRLVNFQQEIV 223 >gi|315639994|ref|ZP_07895121.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus DSM 15952] gi|315484256|gb|EFU74725.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus DSM 15952] Length = 707 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 90/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GRQ +++R +S + GS L G T L+T T E ++ + + Sbjct: 319 IRPDGRQLDEIRALSSEVGLLPRVHGSGLFTRGQTQALSTCTLAPLGEHQIIDGLGVEES 378 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 379 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPDETDFPYTIRLVA 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 435 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 481 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK ++++ Sbjct: 482 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILREALAQAKKARMEILE 540 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 28/233 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R +S+ ++K A G+ LV++GDT +L+ A ++T +T Y + Sbjct: 13 RPLSVEIGQLAKQANGAVLVRYGDTVVLSAAV----ASKEAKDTDFFPLTINYEEKMYAV 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR + R+I R +R + Q+ ++ D Sbjct: 69 GKIPGGFIKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCSPA 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +AL G +A + G + G +++ ++ D Sbjct: 126 MAAMLGSSLALS-------------ISDIPFDGPIAGVDVGRVNGEYVLNPTVEQNEESD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+ L + I +L+ QK+V++ Sbjct: 173 IHLTVAGTAQA-INMVESGAKE--VSEADMLGALLFGHEAIQELVAFQKEVVA 222 >gi|242373566|ref|ZP_04819140.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis M23864:W1] gi|242348929|gb|EES40531.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermidis M23864:W1] Length = 699 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 18/230 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + + GS L G T L+ A + ++ + Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRVHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RALR ++ + I I Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTTDFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A+I G+ +AL D ++ + V + I + D Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED+ D+D T G I +Q + +++ L A+ Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQG 533 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67 R +++ ++K A G+ LV++GDT +L+TAT + + G +P Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR G + R+I R +R + QI+ D Sbjct: 75 ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL +G +A ++ G + G +++ E + Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGNYVINPSVSEKEVSRL 175 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D D+ ++VE A + ++ + + I L+ Q+++I Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223 >gi|42523058|ref|NP_968438.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio bacteriovorus HD100] gi|81617621|sp|Q6MMS2|PNP_BDEBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|39575263|emb|CAE79431.1| polyribonucleotide nucleotidyltransferase [Bdellovibrio bacteriovorus HD100] Length = 697 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 95/244 (38%), Gaps = 20/244 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R+ GR +R I+ + A GS L G+T +L T TL + ++ + Sbjct: 317 VRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLGTADDEQMVDSLLGLQK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID 115 Y P S G + S R+ G + RA+++V+ D I I Sbjct: 377 RKFMLHYNFPPYSVGEVGRMSGTSRREIGHG----NLAERAIKAVLPDFEKFP-YTIRIV 431 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V++++G + + +AL D ++ + + +G A+ + Sbjct: 432 SEVLESNGSSSMGTVCSGIMALLDAGVPLKGNVAGVAMGLIKEGDRVAV---------LT 482 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + +G I +Q + + S + L AK+ A ++ + Sbjct: 483 DILGDEDHLGDMDFKVAGSPAG-ITALQMDIKIDSVSFEVMEQALAQAKEGRAHILNEME 541 Query: 236 DVIS 239 V+ Sbjct: 542 KVMK 545 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 87/231 (37%), Gaps = 32/231 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +I++ ++K A+G+ LV G+ +L TAT +K +T EY +TG Sbjct: 13 QITIETGRLAKQADGAALVSSGNNMVLVTATSSKKASELDFFP----LTVEYIEKFYATG 68 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--T 125 KREA + + I R+I R +R V QI+ V+ ADG Sbjct: 69 KIPGGYFKREA---KPTNDAVLIARLIDRPIRPVFPEGYRHETQIVAT--VLSADGAFPL 123 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A GA ALH G AA+ + G + + + Sbjct: 124 EILASLGASAALH-------------CSDIPFNGPTAAVQIARVDGQFVANPTPQQMEKS 170 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D+D T +G ++ V+G E S+ A L + L+ Q + Sbjct: 171 DMDMIVAGTRNG-LLMVEG--ETKFISEADALAALKFGHQSLIPLLNAQDE 218 >gi|213854708|ref|ZP_03382948.1| defective ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 80 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 2/82 (2%) Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166 +G I +DCDV+QADGGTRTA+ITGA VAL D LQ + + N + +KG VAA+S Sbjct: 1 MGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSV 58 Query: 167 GMLCGYPIVDLDYGEDSTIDVD 188 G++ G + DL+Y EDS + D Sbjct: 59 GIVNGEAVCDLEYVEDSAAETD 80 >gi|194476549|ref|YP_002048728.1| polyribonucleotide nucleotidyltransferase [Paulinella chromatophora] gi|171191556|gb|ACB42518.1| polyribonucleotide nucleotidyltransferase [Paulinella chromatophora] Length = 724 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 89/234 (38%), Gaps = 28/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A GS LV+ GDT +L T T +T +Y Sbjct: 13 REIRLTTGRYAPQASGSVLVECGDTAVLVTIT----RSNSREGVDFLPLTCDYEERLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 R G+ ++RE R R+ I R+I R +R + QI+ C + Sbjct: 69 GRIPGSFMRRE---NRPPERAILIARLIDRPMRPLFPSWMRDDIQIVATCLSLDERVPPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A TGA +A G +A + G+L I++ Y E D Sbjct: 126 VLAATGASIATLIA-------------KIPFHGPMATVRVGLLGDDFILNPSYREIERSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T G +V V+ A + ++ ++ + + +LIK Q ++ + Sbjct: 173 LDLVVAGTPDG-VVMVEAGANQ--LAEQDVIEAIDFGYEAVVELIKAQNKILQD 223 Score = 94.8 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 90/251 (35%), Gaps = 31/251 (12%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR +++R I + + K GS L + G T +L+TATL P + Sbjct: 323 RIDGRSLSEIRPIISSVGILPKRVHGSSLFQRGLTQVLSTATL--GTPSDAQEMDDLNPA 380 Query: 61 AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 E Y P S G + R+ G + RA+ V+ + + Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRSPGRREIGHGV----LAERAIAPVLPDKENFPYVLRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T A+ +AL D LK V+ + G++ Sbjct: 437 VSEVLSSNGSTSMGAVCSGTLALMDAGV-------------PLKAPVSGAAMGLIKEGEE 483 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G I +Q + + +N A+ + Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKMTGLEMETIAEAINQARPARLHI 542 Query: 231 IKLQKDVISNE 241 ++ + I Sbjct: 543 LEKMLEAIDKP 553 >gi|146337231|ref|YP_001202279.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp. ORS278] gi|187470941|sp|A4YJF3|PNP_BRASO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146190037|emb|CAL74029.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Bradyrhizobium sp. ORS278] Length = 719 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I V A GS L G+T L TL + T Sbjct: 316 RIDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+ V+ + + Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTTRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V +++G + A + G+ +AL D ++ + + +L+G A+ + D+ Sbjct: 432 VTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+SG I +Q + +++ L A++ ++ Sbjct: 483 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 38/236 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T + V + G + Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPRDGVDFLPLTVDYQEKAYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + S Q+I+ + Sbjct: 74 P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFVDSWRNETQVIVTVLSHDMENDP- 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D + + + KG + A G I++ E + Sbjct: 127 ------------DIVALVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAER---------ATFSQDHF----FAMLNLAKDRIAD 229 +D T S ++ V+ A+ F HF A++ LA+ D Sbjct: 175 LDLVVAGT-SDAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKD 229 >gi|326567242|gb|EGE17362.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis 12P80B1] Length = 695 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57 R+ GR +R + + V Y GS L G+T L TL V + + TK Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + A R+ G R+ R +++++ + I + + Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + + D L A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538 Query: 234 QKDVISN 240 +VI+ Sbjct: 539 MNEVIAT 545 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%) Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++ L S LV G P I +T Y ++G Sbjct: 15 QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70 Query: 73 RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 K G++ GR+ E R+I R +R + I + VI +D Sbjct: 71 --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G + A G + G +++ E D Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 +D T S ++ +E S+D + Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204 >gi|326565074|gb|EGE15267.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis 46P47B1] Length = 665 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57 R+ GR +R + + V Y GS L G+T L TL V + + TK Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + A R+ G R+ R +++++ + I + + Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + + D L A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538 Query: 234 QKDVISN 240 +VI+ Sbjct: 539 MNEVIAT 545 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%) Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++ L S LV G P I +T Y ++G Sbjct: 15 QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70 Query: 73 RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 K G++ GR+ E R+I R +R + I + VI +D Sbjct: 71 --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G + A G + G +++ E D Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 +D T S ++ +E S+D + Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204 >gi|126175434|ref|YP_001051583.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica OS155] gi|125998639|gb|ABN62714.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica OS155] Length = 703 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 317 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ +A + + + Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAAEFPYSVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 538 Query: 234 QKDVISNE 241 I + Sbjct: 539 MDQAIGSH 546 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 27/208 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T +++ + + T G +P Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 77 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ Sbjct: 132 SMIGTSAALAISGI-------------PFSGPLGAARVGYIDGEYVLNPSVA--QLATSQ 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216 N V+ + V + S E ++ Sbjct: 177 LNLVVAGTAGAVLMVES-EAQALPEEVM 203 >gi|190571231|ref|YP_001975589.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|226704831|sp|B3CM21|PNP_WOLPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|190357503|emb|CAQ54939.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 758 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56 +R+ R+ +++R+I + + GS L G T L TA T +E++ I + Sbjct: 310 VRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRR 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P + G + G R ++ +A+ V+ + I + Sbjct: 370 EHFMLHYNFPPFAVGE----ASAIRAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +++++DG + A + G +AL D +K VA I+ G++ Sbjct: 426 EIMESDGSSSMATVCGTSIALMDTGV-------------PIKAPVAGIAMGLIKDKNEHI 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S + L AK +++ Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-ITALQMDMKIPGISFEIVEKSLEQAKVGRLHILE 531 Query: 233 LQKDVISNE 241 VIS Sbjct: 532 KMNAVISEH 540 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 31/234 (13%) Query: 10 QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGM 65 + R +SL +++ A+GS +V +GDT +L T EE V N + I Y M Sbjct: 12 EGRTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKKEESVDFLPLNVQF--IAKSYAM 69 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--G 123 G KRE G+ R I R+I R++R + I + C+++ D Sbjct: 70 GKIP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTVN 123 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGED 182 A+ G AL +A + G I++ E Sbjct: 124 SPEVPALIGTVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQEM 170 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++D F+ D I+ V+ +E S+++ + + + +IKL K+ Sbjct: 171 KASNLDL-FLSGDENSILMVE--SEVKELSEENVLNAIKFGHEHLQPVIKLIKE 221 >gi|220922849|ref|YP_002498151.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium nodulans ORS 2060] gi|254782728|sp|B8IGX3|PNP_METNO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219947456|gb|ACL57848.1| 3' exoribonuclease [Methylobacterium nodulans ORS 2060] Length = 725 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I V A GS L G+T L ATL + G Sbjct: 316 RIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + I + + Sbjct: 376 TFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVHPLLPAAHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G+ +AL D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + A +++ L+ AKD A ++ Sbjct: 483 LGDEDHLGDMDFKVAGTSEG-VTSLQMDIKIAGITEEIMRVALDQAKDGRAHILGEMAKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 88/255 (34%), Gaps = 48/255 (18%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWITAEYGMLPRS 69 R++ L V++ A+G+ + +G+T +L T +L+E P +T Y + Sbjct: 14 RKLVLETGKVARQADGAVVASYGETTVLATVVSLKEPKP----GIDFLPLTVNYQERAYA 69 Query: 70 TG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 G KRE GR + + R+I R +R + Q+++ + Sbjct: 70 AGRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDP 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 ++ A AL G + A G + ++ E Sbjct: 127 DIVSMVAASAAL-------------TLSGVPFMGPIGAARVGYVGNQYKLNPTIQEMEGS 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD--- 229 +D T++ ++ V+ A+ F HF ++ LA+ + Sbjct: 174 SLDLVVAGTEAA-VLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRD 232 Query: 230 -----LIKLQKDVIS 239 L +++K V+ Sbjct: 233 FQPTDLSEVEKAVLE 247 >gi|302788516|ref|XP_002976027.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii] gi|300156303|gb|EFJ22932.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii] Length = 705 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 15/240 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56 +R+ GR +R++ + GS L G+T +L T TL E I Sbjct: 315 IRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPPK 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG-SRQIIID 115 Y P S K ++ R+ G + +AL +++ + ++ Sbjct: 375 KRFMVHYSFPPFSVNEVGKVGGLNRREVGHGT----LAEKALVALLPPEDENFPYSVRVN 430 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V+ +DG + A + G +AL D ++ + L +V A + + + Sbjct: 431 SEVMASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVG--LMTNVDAETGEIKNYKILT 488 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN---LAKDRIADLIK 232 D+ ED D+D T G + +Q + L +A+ +I DL++ Sbjct: 489 DILGLEDHLGDMDFKIAGTKKG-VTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLME 547 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 34/237 (14%) Query: 14 ISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++ A G+ + G+T +L T +E + EY + G Sbjct: 15 LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDE---RLDAGRDFMPLQVEYREKSYAQGK 71 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 ++RE G R R+I R++R + QI+ + V+ +DG Sbjct: 72 IPNTFMRRE---GAPKERELLCGRVIDRSIRPLFPKGYYFETQIMAN--VLCSDGEQD-- 124 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 D L + G + + G + G +V+ D D+ D Sbjct: 125 ---------PDILAANAASAALALSDVPWNGPIGVVRIGRVDGKFVVNPDM--DTLSGSD 173 Query: 189 ANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N + + ++E Q + F A L LA + LI+ Q+ ++ +V Sbjct: 174 LNLIYSCTAERSLMIETQA----REITNKDFTAALKLAHSEASKLIEPQRR-LAAKV 225 >gi|149635838|ref|XP_001511768.1| PREDICTED: similar to Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 [Ornithorhynchus anatinus] Length = 276 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 87/257 (33%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFTAPPG-DAPNKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + G G +Q + I + ++ L G ++ Sbjct: 82 NVDLPPLCSS-----RFRPGPPGEEAQVASQFINDVIENSQLIAKEDLCISKGKLAWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ + A Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPAVVINEETGLAEVNFKQKTPLNIRAYPIAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E++ VM + G + + + + L+ A Sbjct: 197 SFAIFDNTILIVDPTGEEENLATGTLTVVMDEEGKLCCLHKPG-GSALAGTKLQDCLSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ L +VI + Sbjct: 256 VTRHKEVKVLMDEVIQS 272 >gi|73969672|ref|XP_538497.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1 isoform 1 [Canis familiaris] Length = 789 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R I+ + K GS L + G T + T T + +++ I Sbjct: 363 RCDGRDLTSLRNINCEVDLFKTLHGSALFQRGQTQVFCTVTFDSLESSIKSDRIITAING 422 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL V+ I Sbjct: 423 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAEKALYPVIPKDF--PFTIR 476 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + G + Y Sbjct: 477 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNNP---DKGEIEDYR 533 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T G I +Q + + A ++++ Sbjct: 534 LLTDILGIEDYNGDMDFKIAGTSKG-ITALQADIKLPGIPIKIVMEAIQQASVAKREILQ 592 Query: 233 LQKDVISNE 241 + IS Sbjct: 593 IMNKTISKP 601 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 26/184 (14%) Query: 30 VKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGR 86 +K GDT ++ TA T + A G +P N ++RE S + Sbjct: 78 LKSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP---TNYLRREVGS---SDK 131 Query: 87 SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHM 144 R+I R++R + Q++ C+++ DG AI GA VAL Sbjct: 132 EVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEPDVLAINGASVALS------ 183 Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204 G + A+ GM+ G +V+ E S+ ++ IV ++ Sbjct: 184 -------LSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEA 236 Query: 205 SAER 208 SAE Sbjct: 237 SAEN 240 >gi|315028235|gb|EFT40167.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis TX4000] Length = 704 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T L+ T E ++ + Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL ++ I + Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICSGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L+ AK ++++ Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67 R + + ++K A G+ LV++GDT +L A+ E K V + + G +P Sbjct: 14 RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R+ R+I R +R + QI ++ D Sbjct: 74 ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G +++ + D+ Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S++ L D I +L+ Q+++++ Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223 >gi|251791031|ref|YP_003005752.1| polynucleotide phosphorylase/polyadenylase [Dickeya zeae Ech1591] gi|247539652|gb|ACT08273.1| Polyribonucleotide nucleotidyltransferase [Dickeya zeae Ech1591] Length = 706 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKPEAFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ Y + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G +P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R +R + + Q+I + Sbjct: 75 --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E T +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTEELKTSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T+ G ++ V+ +E S+D + Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAV 205 >gi|237738330|ref|ZP_04568811.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420210|gb|EEO35257.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 699 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR+ ++R + GS + G+T + TL K + + + Sbjct: 324 RVDGRKTTEIRPLFAEVNCLPIPHGSAMFTRGETQAVVITTLGTKEDEQLVDDLEKEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G + RAL+ V+ I + + Sbjct: 384 KFYLHYNFPPYSVGETGRMGSPGRRELGHGS----LAERALKYVIPSEEEFPYTIRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A+I G ++L +K HVA I+ G++ Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGDEFTV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ L A D ++++L Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITEEIMRIALKQALDARNEILEL 545 Query: 234 QKDVI 238 + I Sbjct: 546 MNNTI 550 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 85/248 (34%), Gaps = 33/248 (13%) Query: 4 SGRQEN-QM--REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNT 54 R+ ++ R ++ + +++ + G+ +V++GDT LL+T K P + Sbjct: 3 DERKVQMELAGRTLTFSTGKIARQSCGAVMVQYGDTVLLSTVN-RSKEPRKENDFFPLTV 61 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + G P G KRE G+ + R+I R +R + I+ Sbjct: 62 DYIEKFYAAGKFP---GGFNKRE---GKPSTNATLTARLIDRPIRPMFPDGFNYDVHIVN 115 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 I G+ +AL G VA + G G I Sbjct: 116 TVFSFDEKNTPDYLGIIGSSMAL-------------MLSDLPFLGPVAGVVIGYKNGEFI 162 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 ++ E T +++ + T I V+ A ++ + A + I + Q Sbjct: 163 LNPTPEELETSELELSVAGTREA-INMVEAGANE--LDEETMLKAIMFAHENIKKICDFQ 219 Query: 235 KDVISNEV 242 + + EV Sbjct: 220 -EAFAKEV 226 >gi|217972320|ref|YP_002357071.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica OS223] gi|254782734|sp|B8E6N7|PNP_SHEB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|217497455|gb|ACK45648.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica OS223] Length = 699 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ +A + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAAEFPYSVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I + Sbjct: 536 MDQAIGSH 543 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 27/208 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T +++ + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 74 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYIDGEYVLNPSVA--QLATSQ 173 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216 N V+ + V + S E ++ Sbjct: 174 LNLVVAGTAGAVLMVES-EAQALPEEVM 200 >gi|313115448|ref|ZP_07800916.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622242|gb|EFQ05729.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf. prausnitzii KLE1255] Length = 716 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 30/243 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR N++R ++ + GS + G T +LTT TL + + T Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G G R + RAL V+ I + Sbjct: 382 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGALAERALVPVLPSLEEFPYTIRCVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V+ ++G T A+I G+ +AL D +K VA ISCG++ Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITEGDRWMT 484 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IAD 229 ++D+ ED D+D T G I +Q + + D + + + Sbjct: 485 MLDIQGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDE 543 Query: 230 LIK 232 +IK Sbjct: 544 IIK 546 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 31/237 (13%) Query: 12 REISLTRRV---SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYG 64 R + A S ++++G+T +L E V + N ++ G Sbjct: 25 RPFKVEMGKMCGLSNA--SAMIRYGETCVLCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G+ ++RE GR G R+ R++ R +R + I + + D Sbjct: 83 RIP---GSFMRRE---GRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A + GA + G + + G++ G +++ + Sbjct: 137 PEIAGMIGASLVTA-------------VSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKV 183 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D+ T IV ++ A +D + A I I+ +++ Sbjct: 184 SDLALTVAAT-MDKIVMIEAGANE--VDEDTMLNAIKAAHVEIKKTIEFINRIVAER 237 >gi|288940255|ref|YP_003442495.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum DSM 180] gi|288895627|gb|ADC61463.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum DSM 180] Length = 699 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ V GS L G+T + TL + I + G Sbjct: 318 RIDGRDTKTVRPITIRTGVLPRTHGSALFTRGETQAMVITTLGTERDSQIIDALEGERRE 377 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + + R+ G R+ R + +V+ + + + Sbjct: 378 HFMLHYNFPPFCVGEIGRVGSPKRREIGHG----RLAKRGVLAVMPSIEEFPYSVRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ G +AL D +K VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGTSLALMDAGV-------------PIKAPVAGVAMGLIKEGERFAV 480 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L AK+ ++ Sbjct: 481 LTDIMGDEDHLGDMDFKVAGTADG-INALQMDIKIEGITREIMEIALAQAKEGRLHILGE 539 Query: 234 QKDVISNE 241 VI + Sbjct: 540 MNKVIDSH 547 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 70/228 (30%), Gaps = 26/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 + L +++ A+G+ LV +T EY + G Sbjct: 17 VRLETGEIARQADGAVLVNM---DDTVVLVTVVVDKRPGAERDFLPLTVEYQEKTYAAGR 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 +RE GR R+I R +R + QII + Sbjct: 74 IPGGFFRRE---GRPSEGEILTARLIDRPIRPLFVEGFCNEVQIIATVKSLN-------P 123 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ AL + + G +AA G G I++ D D Sbjct: 124 AVNPEVPAL------IGASAALALSGAPFNGPIAAARVGYKNGEYILNPALT-GLNPDSD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + V+ + V + S E S++ + +++ +I+ ++ Sbjct: 177 LDLVVAGTDKAVLMVES-EARGLSEEIMLGAVLFGHEQMQVVIQAIRE 223 >gi|225011625|ref|ZP_03702063.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium MS024-2A] gi|225004128|gb|EEG42100.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium MS024-2A] Length = 709 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 85/245 (34%), Gaps = 20/245 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR+ +R I GS L G+T L T TL E + + Sbjct: 317 IRLDGRKTTDIRPIWCEVDYLPSTHGSALFTRGETQALATTTLGTSREANMIDSPSHQGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + RAL+ V+ + I Sbjct: 377 ETFYLHYNFPPFCTGEARPLRGTSRREVGHG----NLAQRALKKVMPDD--CPYTVRIVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +AL D ++ + + + G A+ + D Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVKIKKPVSGIAMGLITDGDRFAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + D LN A+D ++ + Sbjct: 482 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLRFDIMTQALNQARDGRLHILDHLIE 540 Query: 237 VISNE 241 I+ Sbjct: 541 TIATP 545 Score = 79.4 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 84/240 (35%), Gaps = 27/240 (11%) Query: 7 QENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAE 62 + R I++ K A+GS +V+ GD LL TA K V + A Sbjct: 11 RFEDGRTITIETGKLAKQADGSVVVRMGDCMLLATAVSARKASPVDFLPLTVDYREKFAA 70 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122 G P G KREA R R++ R LR + Q++I ++ D Sbjct: 71 AGRFP---GGFFKREA---RPSDNEVLTMRLVDRVLRPLFPKDYHAETQVMI--QLMSHD 122 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 + D L + + + ++ + + G IV+ + Sbjct: 123 ENV-----------MPDALAGLAASTAIQLSDIPFEYPISEVRVARVDGMFIVNPSREQL 171 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D+D + + + V+G E S++ ++ + I D IK Q ++ V Sbjct: 172 DASDIDI-MIGASADSVAMVEG--EFDEISEEEMLDAISFGHEAIKDQIKAQ-IALAEAV 227 >gi|326568253|gb|EGE18335.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis BC8] Length = 695 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57 R+ GR +R + + V Y GS L G+T L TL V + + TK Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + A R+ G R+ R +++++ + I + + Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + + D L A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538 Query: 234 QKDVISN 240 +VI+ Sbjct: 539 MNEVIAT 545 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%) Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++ L S LV G P I +T Y ++G Sbjct: 15 QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70 Query: 73 RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 K G++ GR+ E R+I R +R + I + VI +D Sbjct: 71 --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G + A G + G +++ E D Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 +D T S ++ +E S+D + Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204 >gi|325915559|ref|ZP_08177870.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas vesicatoria ATCC 35937] gi|325538275|gb|EGD09960.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Xanthomonas vesicatoria ATCC 35937] Length = 704 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS V GS L G+T + TL + + G Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536 Query: 233 LQKDVISNE 241 ++ Sbjct: 537 EMAHALTTP 545 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +VKF DT LL TA + E + + G +P Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G +AA G G I++ E ++ Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTELKDSQLE 175 Query: 189 ANFVMTDSGHIV 200 T + ++ Sbjct: 176 LVVAGTANAVLM 187 >gi|307129389|ref|YP_003881405.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937] gi|306526918|gb|ADM96848.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937] Length = 706 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELIGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKPEAFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ Y + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G +P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + + Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E T +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTEELKTSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T+ G ++ V+ +E S+D + Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAV 205 >gi|301756464|ref|XP_002914081.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Ailuropoda melanoleuca] Length = 784 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R I+ + K GS L + G T +L T T + +++ I Sbjct: 358 RCDGRDLTSLRNINCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSMKSDQIITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL V+ + Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAEKALYPVIPKDF--PFTVR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K + G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKNNP---DKGEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T G I +Q + + A ++I+ Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTTKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEIIQ 587 Query: 233 LQKDVISNE 241 + IS Sbjct: 588 IMNKTISKP 596 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+GS +V+ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE S + R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGS---SDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA VAL G + A+ GM+ G +V+ E S+ Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMMEASAEN 235 >gi|160876518|ref|YP_001555834.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica OS195] gi|304410260|ref|ZP_07391879.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica OS183] gi|307302029|ref|ZP_07581787.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica BA175] gi|187611316|sp|A3D7K1|PNP_SHEB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037315|sp|A9KZW6|PNP_SHEB9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|160862040|gb|ABX50574.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica OS195] gi|304351669|gb|EFM16068.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica OS183] gi|306914067|gb|EFN44488.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica BA175] gi|315268712|gb|ADT95565.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica OS678] Length = 700 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ +A + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAAEFPYSVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I + Sbjct: 536 MDQAIGSH 543 Score = 71.7 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 27/208 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T +++ + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 74 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYIDGEYVLNPSVA--QLATSQ 173 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216 N V+ + V + S E ++ Sbjct: 174 LNLVVAGTAGAVLMVES-EAQALPEEVM 200 >gi|316931583|ref|YP_004106565.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris DX-1] gi|315599297|gb|ADU41832.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris DX-1] Length = 722 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 89/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I V A GS L G+T L TL ++ G Sbjct: 316 RIDGRDSKTVRSILAQAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+ V+ I + + Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + +++ L AKD ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIGGITEEIMKVALGQAKDGRIHILGEMSKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 88.2 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 45/254 (17%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T +L T E V + G + Sbjct: 14 RPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQEKAYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL +G + A G + +++ D + Sbjct: 128 VLAMVAASAALTLSGA-------------PFRGPIGAARVGFINDEYVLNP--VLDEMAE 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIA--- 228 V+ + V + S E S++ A++ LA+ Sbjct: 173 TQLELVVAGTADAVLMVES-EAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPR 231 Query: 229 DLIKLQKDVISNEV 242 +LI++ I E+ Sbjct: 232 ELIEIDNAAIEKEM 245 >gi|327264085|ref|XP_003216847.1| PREDICTED: exosome complex exonuclease RRP43-like [Anolis carolinensis] Length = 277 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 24/256 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R ++ A+GS LVK G+T ++ E P+ ++ G+I Sbjct: 25 RPDGRDLGEFRTTTINIGSITTADGSALVKLGNTTVVCGIKAEFAAPL-ADSSNKGYIVP 83 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + G G +Q + + + VV L G ++ Sbjct: 84 NVDLPPLCSS-----RFRPGPPGEEAQAASQFVADVIENSQVVMKEDLCIVDGKIAWVLY 138 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A + AL + + + + K ++ ++ A Sbjct: 139 CDIICLDYDGNLLDACMCAFLAALRNVQLPAVTINEETGLAEVNLKEKIPLTIRKEPVAT 198 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 S + IVD E+ V + G + V + + ++ A Sbjct: 199 SFILFDTVMIVDPTAEEEDLATGMLTIVTDEEGKLCSVHKPG-GSALTGAKLQDCISRAT 257 Query: 225 DRIADLIKLQKDVISN 240 R ++ KL VI + Sbjct: 258 ARYKEVKKLIDKVIKS 273 >gi|257784591|ref|YP_003179808.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM 20469] gi|257473098|gb|ACV51217.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM 20469] Length = 732 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 83/233 (35%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57 R+ GR N++R I + GS L + G T +L T + + I Sbjct: 319 RVDGRVANEIRPIMVKPDYLPLVHGSGLFQRGQTQVLSICTLGMLNEWQRLDTIEPMDGK 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + + R+ G + RAL V+ I + + Sbjct: 379 RYIHHYNFPPFCTGETGRMGSPKRREIGHG----ALAERALLPVIPSEEEFPYTIRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 V++++G + A+ G+ ++L D LK V+ ++ G++ Sbjct: 435 VMESNGSSSMASTCGSTLSLMDAGV-------------PLKRPVSGVAMGLIQENGKTVV 481 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I +Q + + + L A + Sbjct: 482 LTDIQGLEDFLGDMDFKVCGTTKG-ITAMQMDNKATGLTPEILRNALMQAHEG 533 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 80/224 (35%), Gaps = 27/224 (12%) Query: 22 KYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 K A G+C+VK GD+ +L + E K + G +P G +KREA Sbjct: 24 KQATGACIVKCGDSTVLLTAVVSKERKDYDFFPLTVDFIEKMYAVGRVP---GGYLKREA 80 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 R ++ RMI R LR QI+ V T ++ GA AL Sbjct: 81 ---RPSEKATLTARMIDRPLRPSFPEGFRNEVQIVATSLVADQVNAVDTISVMGASAALA 137 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDANFVMTDS 196 +G +A + G G +V+ Y E D+D + S Sbjct: 138 -------------VGGVPFEGPLACVRIGRNADTGEFLVNPTYEERDHSDLDLE--LGGS 182 Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + + A S++ + + ++ IA + QK I+ Sbjct: 183 STFISM-LEAGADEISEEDMLSAMAFGQEAIAAFCEEQKKFIAK 225 >gi|326564308|gb|EGE14538.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis 103P14B1] gi|326574715|gb|EGE24651.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis 101P30B1] Length = 695 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57 R+ GR +R + + V Y GS L G+T L TL V + + TK Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + A R+ G R+ R +++++ + I + + Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + + D L A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538 Query: 234 QKDVISN 240 +VI+ Sbjct: 539 MNEVIAT 545 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%) Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++ L S LV G P I +T Y ++G Sbjct: 15 QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70 Query: 73 RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 K G++ GR+ E R+I R +R + I + VI +D Sbjct: 71 --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G + A G + G +++ E D Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 +D T S ++ +E S+D + Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204 >gi|169634530|ref|YP_001708266.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii SDF] gi|226702588|sp|B0VLR7|PNP_ACIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169153322|emb|CAP02433.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Acinetobacter baumannii] Length = 697 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R + + V + A GS L G+T L T TL + TK Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538 Query: 234 QKDVIS 239 VIS Sbjct: 539 MNKVIS 544 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 35/172 (20%) Query: 77 EAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADGGTRTA 128 G++ GR+ E R+I R +R + Q+ ++AD A Sbjct: 75 PGGYGKREGRASEAETLTSRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMEAD----IA 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL +G + A G++ G +++ ++ + + D+D Sbjct: 131 AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 T+S ++ +E S+D + +A I + Sbjct: 178 LVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAA 226 >gi|326570032|gb|EGE20078.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis BC7] Length = 696 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57 R+ GR +R + + V Y GS L G+T L TL V + + TK Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + A R+ G R+ R +++++ + I + + Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + + D L A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538 Query: 234 QKDVISN 240 +VI+ Sbjct: 539 MNEVIAT 545 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%) Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++ L S LV G P I +T Y ++G Sbjct: 15 QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70 Query: 73 RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 K G++ GR+ E R+I R +R + I + VI +D Sbjct: 71 --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G + A G + G +++ E D Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 +D T S ++ +E S+D + Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204 >gi|326559316|gb|EGE09743.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis 7169] gi|326569953|gb|EGE20000.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis BC1] gi|326572889|gb|EGE22874.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis CO72] gi|326573663|gb|EGE23621.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis O35E] Length = 695 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57 R+ GR +R + + V Y GS L G+T L TL V + + TK Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + A R+ G R+ R +++++ + I + + Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + + D L A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538 Query: 234 QKDVISN 240 +VI+ Sbjct: 539 MNEVIAT 545 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%) Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++ L S LV G P I +T Y ++G Sbjct: 15 QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70 Query: 73 RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 K G++ GR+ E R+I R +R + I + VI +D Sbjct: 71 --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G + A G + G +++ E D Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 +D T S ++ +E S+D + Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204 >gi|167763705|ref|ZP_02435832.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC 43183] gi|167697821|gb|EDS14400.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC 43183] Length = 716 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T L+T TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 SKITECIAEP 548 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ R G KRE GR R++ RALR + + + ++ + Sbjct: 66 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V + D L + + G ++ + + G +++ + Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFE 169 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ + A + I K Q + ++ Sbjct: 170 QLEKADMDLMVGATYE-NIMMVEG--EMDEVSERDLLEAMKAAHEAIKIQCKAQME-LAE 225 Query: 241 EV 242 EV Sbjct: 226 EV 227 >gi|153001784|ref|YP_001367465.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica OS185] gi|187611290|sp|A6WRG3|PNP_SHEB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151366402|gb|ABS09402.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica OS185] Length = 700 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ +A + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAAEFPYSVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I + Sbjct: 536 MDQAIGSH 543 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 27/208 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T +++ + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 74 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYIDGEYVLNPSVA--QLATSQ 173 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216 N V+ + V + S E ++ Sbjct: 174 LNLVVAGTAGAVLMVES-EAQALPEEVM 200 >gi|302404108|ref|XP_002999892.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum VaMs.102] gi|261361394|gb|EEY23822.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum VaMs.102] Length = 155 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 7/144 (4%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57 +R+ GR+ N++R + R A+GS ++ G T ++ T + +K Sbjct: 13 LRVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDA 72 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + + S+ +R K GR R E++ + +A S + I I Sbjct: 73 AVNVSIVVAGFSSVDRRK----YGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLH 128 Query: 118 VIQADGGTRTAAITGAWVALHDCL 141 V+ DG A + +AL D Sbjct: 129 VLSQDGSLLAALLNATTLALVDAG 152 >gi|255693073|ref|ZP_05416748.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii DSM 17565] gi|260621113|gb|EEX43984.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii DSM 17565] Length = 708 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKMDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + LN AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 NKITETIAEP 548 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHGWITAEYGML 66 R I+L K A+GS +++ G+T LL T ++ VP ++ A +G Sbjct: 15 RTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAAFGRF 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R++ RALR + + ++ ++ + ADG Sbjct: 75 P---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILFSADG--- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 V + D L + + G ++ + + G +++ + + D Sbjct: 124 --------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T +I+ V+G E S+ + +A + I K Q + Sbjct: 176 MDLMVAATYE-NIMMVEG--EMQEVSEAELLEAMKVAHEAIKIHCKAQME 222 >gi|146283626|ref|YP_001173779.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri A1501] gi|187611273|sp|A4VPN6|PNP_PSEU5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145571831|gb|ABP80937.1| polyribonucleotide nucleotidyltransferase [Pseudomonas stutzeri A1501] Length = 701 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS L G+T L ATL + +T G Sbjct: 316 RIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R +GR R R+ R + +++ + I + + Sbjct: 376 AFMLHYNFPPYSVGE-CGRMGATGR---REIGHGRLARRGVAAMLPSADEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D M K VA I+ G++ G Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A + +++ Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEIALGQALEARLNILGQ 537 Query: 234 QKDVISN 240 VI+ Sbjct: 538 MSQVIAQ 544 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 ++L +++ A G+ LV D +L T + + + + T G +P Sbjct: 15 VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA R + R+I R +R + Q+I Sbjct: 75 ---GGFFKREA---RPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186 AA+ G AL G + A +++ +Y + Sbjct: 129 AAMIGTSAALAVSGI-------------PFDGPIGAARVAFHPETGYLLNPNYEQLKASS 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T ++ +E ++D + A D +IK ++ Sbjct: 176 LDMVVAGTKDAVLMV---ESEAKELTEDQMLGAVLFAHDEFQAVIKAVEE 222 >gi|319779764|ref|YP_004139240.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165652|gb|ADV09190.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 715 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I V GS L G+T L ATL ++ G Sbjct: 317 RIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 377 KFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSADQFPYTLRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G I +Q + +++ L+ AKD ++ Sbjct: 484 LGDEDHLGDMDFKVAGTANG-ITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHA 542 Query: 238 I 238 + Sbjct: 543 L 543 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTT-ATLEEKVP---MWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T +++E P + + T G + Sbjct: 14 RPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + QI++ V+Q D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFASGYKNDTQIVVT--VVQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 +I AL G V G + G +++ E Sbjct: 126 PDILSIVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHVDEMQE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E ++ + +I Sbjct: 173 SKLDLVVAGTADAVLMV---ESEAKELGEELMLGAVMFGHKGFQPVIDA 218 >gi|317493630|ref|ZP_07952051.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918573|gb|EFV39911.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 704 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDGLTGEQTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPKQDEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 60.9 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 28/233 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T +E + + T G P Sbjct: 16 VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLTVNYQERTYAAGRFP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR G I R+I R +R + L Q++ + Sbjct: 75 --GGFFRRE---GRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTDELQESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 T+ G ++ V+ +E S+D + ++ +I+ K ++ E Sbjct: 177 LVVAGTE-GAVLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIENIK-ALAAE 225 >gi|226951862|ref|ZP_03822326.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC 27244] gi|294649119|ref|ZP_06726561.1| polyribonucleotide nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226837402|gb|EEH69785.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC 27244] gi|292825002|gb|EFF83763.1| polyribonucleotide nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 714 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R I + V A GS L G+T L T TL + TK Sbjct: 334 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 393 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 394 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 449 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 450 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 496 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 497 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 555 Query: 234 QKDVIS 239 VIS Sbjct: 556 MNKVIS 561 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 43/237 (18%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 ++ L V++ A + LV G +L P +T Y + G Sbjct: 34 QVVLETGRVARQAN-TVLVTMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 89 Query: 72 NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123 + G++ GR+ E I R+I R +R + Q+ + AD Sbjct: 90 ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDAD- 145 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AA+ G AL +G + G++ G +++ ++ + + Sbjct: 146 ---IAAMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLA 189 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 D+D T+S ++ +E S+D + +A I + Sbjct: 190 QSDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 243 >gi|156039812|ref|XP_001587013.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980] gi|154696099|gb|EDN95837.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980 UF-70] Length = 261 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 20/250 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +RL GR+ N++R ++ ++GS + G+T +L T T P +R+ G Sbjct: 13 LRLDGRRWNELRRVTAQISTQPASDGSSYLSMGNTQVLCTVTGP-CDPSKLRSIGGGGNS 71 Query: 58 ------WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 + E + +R K GR R QE+ + + + + Sbjct: 72 NAGEKAEVRVEISFAGFAGVDRKK----YGRNDKRIQELSNTLSTTFTPHLLTTLTSNST 127 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 I++ ++ DG +A I + +AL D M G ++ S Sbjct: 128 ILLSLHILSLDGSLLSALINASTLALIDAGIPMPSYICACTA-----GSTSSYSSNDEKA 182 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 P++DL+ E+ + G V ML + D + Sbjct: 183 DPLLDLNLSEEQELPF-LTVATAGEGDGDGVVALVMETRVQAGRLEGMLAVGVDGCKQVR 241 Query: 232 KLQKDVISNE 241 ++ VI + Sbjct: 242 EILDGVIRSR 251 >gi|257096721|sp|B2RIW6|PNP_PORG3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 743 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 24/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 RL GR+ ++R I + GS + G+T LTT TL K + + + Sbjct: 318 RLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 377 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ ++ + + D Sbjct: 378 RFLLHYNFPPFSTGEARPQRGVGRREIGHG----NLAHRALKRMIPTD--YPYVVRVISD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 +++++G + A + +AL D + + + IS Y I+ D Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMG--------LISENQGKNYAILSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232 + ED D+D T G I Q + S + L AK + +++ Sbjct: 484 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIME 542 Query: 233 LQKD 236 Q + Sbjct: 543 AQPE 546 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 21/227 (9%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69 R I + K A+G+ V G+T LL T ++ P +Y + R Sbjct: 15 RSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGRF 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +RE G+ R++ RALR + + ++ ++ + ADG Sbjct: 75 PGGFTRRE---GKASDYEILTCRLVDRALRPLFPDN--YHAEVFVNVILFSADG------ 123 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + D L + + G ++ + + G IV+ + + D+D Sbjct: 124 -----EDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDL 178 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V +I+ V+G E + + +A + I K Q + Sbjct: 179 -MVGATMDNIMMVEG--EMDEVQESEMLEGIRVAHEAIKVQCKAQLE 222 >gi|296113971|ref|YP_003627909.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis RH4] gi|295921665|gb|ADG62016.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis RH4] Length = 696 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57 R+ GR +R + + V Y GS L G+T L TL V + + TK Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + A R+ G R+ R +++++ + I + + Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + + D L A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538 Query: 234 QKDVISN 240 +VI+ Sbjct: 539 MNEVIAT 545 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%) Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++ L S LV G P I +T Y ++G Sbjct: 15 QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70 Query: 73 RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 K G++ GR+ E R+I R +R + I + VI +D Sbjct: 71 --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G + A G + G +++ E D Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 +D T S ++ +E S+D + Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204 >gi|289665195|ref|ZP_06486776.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667359|ref|ZP_06488434.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 704 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS V GS L G+T + TL + + G Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536 Query: 233 LQKDVISNE 241 ++ Sbjct: 537 EMAHALTTP 545 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +VKF DT LL TA + E + + G +P Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G +AA G G I++ E ++ Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTELKDSQLE 175 Query: 189 ANFVMTDSGHIV 200 T + ++ Sbjct: 176 LVVAGTANAVLM 187 >gi|271499178|ref|YP_003332203.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586] gi|270342733|gb|ACZ75498.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586] Length = 706 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKPEAFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ Y + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENYVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G +P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R +R + + Q+I + Sbjct: 75 --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E T +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTEELKTSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T+ G ++ V+ +E S+D + Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAV 205 >gi|298387792|ref|ZP_06997342.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14] gi|298259397|gb|EFI02271.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14] Length = 708 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 RL GR+ ++R I GS + G+T LT+ T L+EK+ + Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDNVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + + Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + LN AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 DKITETIAEP 548 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57 GR I+L K A+GS +++ G+T LL T ++ VP ++ Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A +G P G KRE GR R++ RALR + + ++ ++ Sbjct: 66 EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ADG V + D L + + G ++ + + G +++ Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + D+D T +I+ V+G E S+ + +A + I K Q + Sbjct: 167 TFDQLEKADMDLMVAATYD-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKVHCKAQME- 222 Query: 238 ISNEV 242 ++ EV Sbjct: 223 LTEEV 227 >gi|145298048|ref|YP_001140889.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida subsp. salmonicida A449] gi|187470962|sp|A4SJR9|PNP_AERS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|142850820|gb|ABO89141.1| polyribonucleotide nucleotidyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 713 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 93/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R +S+ + A GS L G+T + ATL + + + Sbjct: 314 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELAGHRAD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ +A + + + Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHG----RLAKRGVAAVMPSAAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEEEGFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A+ ++K+ Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTQG-ITALQMDIKIEGITKEIMEIALKQARGARLHILKV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MDEAI 540 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + T + + + T G +P Sbjct: 15 VTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR R+I R +R + L Q++ + Sbjct: 74 --GGFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVVATVMSVNPLVSPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G +AA G + G +++ E D+D Sbjct: 129 AMIGASAALAISGI-------------PFGGPIAAARVGYMNGQYVLNPTTAELPQSDLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + ++ +E A S++ + +++ +I + Sbjct: 176 LVVAGTANAVLMV---ESEAAILSEEVMLGAVVYGHEQMQVVINAINE 220 >gi|70932569|ref|XP_737786.1| exosome complex exonuclease rrp41 [Plasmodium chabaudi chabaudi] gi|56513462|emb|CAH83474.1| exosome complex exonuclease rrp41, putative [Plasmodium chabaudi chabaudi] Length = 227 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 27/233 (11%) Query: 2 RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 RL GR+ ++ R I + + A+G + G+T +L+ ++ ++ Sbjct: 13 RLDGRKCDEYRLIKINMGNQNIFTDADGFAFYEIGNTKILSYIQGPTEL---KKSDDKCS 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I + + P + ++ K++ + EI I +++ L + +I I + Sbjct: 70 IKCDVFLSPFNVYDKRKKKTK----DNITNEISAYIRNICENIILLDLYKNSEINIFLYI 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 I+ DGG + AAI +AL D +K ++A S L IVD + Sbjct: 126 IERDGGIKHAAINTCILALIDAGIA-------------IKYFISACSVLYLQNQIIVDGN 172 Query: 179 YGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 E ++ + V+ ++ I+ ++ AE D F +M+ D ++ Sbjct: 173 QLEINSGSPELTMVIELNTHKIILLEFDAE---VPIDIFESMVQTCIDSCVNI 222 >gi|115534063|ref|NP_497324.3| hypothetical protein BE0003N10.1 [Caenorhabditis elegans] Length = 738 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--------TTATLEEKVPMWIR 52 +R GR+ ++ R I++ + K G + + G T ++ A + V + Sbjct: 333 IRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 392 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 + + Y + +++ R+ G + ++L+++ Sbjct: 393 SQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHG----ALAEKSLKNLFPAD-FPYAT- 446 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + C V++++G + A++ G +AL D M++ + + G ++ + Sbjct: 447 RLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAI-----GLISDEAEPETKYR 501 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G Q + ++ L A+ I + Sbjct: 502 VLTDILGIEDYAGDMDFKVAGTRDG-FTAAQLDVKNGGLTRRQLTESLQAARAGIDHV-- 558 Query: 233 LQK 235 LQK Sbjct: 559 LQK 561 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 75/227 (33%), Gaps = 25/227 (11%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG-NRVKRE 77 ++++A + + FGD ++ T V + + + P ++ R+ Sbjct: 44 HLARFASSTVVASFGDNAVMATV-----VQRKSKQGDGSGVPLQVEYRPSASAIGRIPTN 98 Query: 78 AVSGR--QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 + Q I R I R++R ++ ++ QII + + I A Sbjct: 99 FLRRELSQSDNEILISRAIDRSIRPLLPGNSY-ETQIICKPLALDENADQIMLGINAAST 157 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANFVMT 194 AL S G +AA+ G V+ E ++ M Sbjct: 158 ALQ-------------ISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAMR 204 Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 V ++ + S +H L++A +A L + + + + Sbjct: 205 KHEKTVMIELDGRES--SAEHLEHALDVAFRHVAKLHEAMEQLTAEP 249 >gi|332851858|ref|ZP_08433761.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013150] gi|332867443|ref|ZP_08437603.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013113] gi|332873102|ref|ZP_08441059.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6014059] gi|322506580|gb|ADX02034.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 1656-2] gi|323516459|gb|ADX90840.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii TCDC-AB0715] gi|332729643|gb|EGJ60979.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013150] gi|332733983|gb|EGJ65127.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6013113] gi|332738614|gb|EGJ69484.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii 6014059] Length = 695 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R + + V + A GS L G+T L T TL + TK Sbjct: 315 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 375 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 431 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 478 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 536 Query: 234 QKDVIS 239 VIS Sbjct: 537 MNKVIS 542 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 35/172 (20%) Query: 77 EAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADGGTRTA 128 G++ GR+ E I R+I R +R + Q+ ++AD A Sbjct: 73 PGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMEAD----IA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL +G + A G++ G +++ ++ + + D+D Sbjct: 129 AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 T+S ++ +E S+D + +A I + Sbjct: 176 LVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAA 224 >gi|169797384|ref|YP_001715177.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AYE] gi|184156693|ref|YP_001845032.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii ACICU] gi|213155801|ref|YP_002317846.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB0057] gi|215484824|ref|YP_002327059.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB307-0294] gi|239500905|ref|ZP_04660215.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB900] gi|260556276|ref|ZP_05828495.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii ATCC 19606] gi|301348030|ref|ZP_07228771.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB056] gi|301510806|ref|ZP_07236043.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB058] gi|301594566|ref|ZP_07239574.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii AB059] gi|187471097|sp|A3M1M7|PNP_ACIBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702585|sp|B7H0Z1|PNP_ACIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702586|sp|B7I3U1|PNP_ACIB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702587|sp|B2I2Q0|PNP_ACIBC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702589|sp|B0VEA3|PNP_ACIBY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169150311|emb|CAM88208.1| polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Acinetobacter baumannii AYE] gi|183208287|gb|ACC55685.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Acinetobacter baumannii ACICU] gi|193076200|gb|ABO10821.2| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii ATCC 17978] gi|213054961|gb|ACJ39863.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB0057] gi|213985856|gb|ACJ56155.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii AB307-0294] gi|260410331|gb|EEX03630.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii ATCC 19606] Length = 697 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R + + V + A GS L G+T L T TL + TK Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538 Query: 234 QKDVIS 239 VIS Sbjct: 539 MNKVIS 544 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 35/172 (20%) Query: 77 EAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADGGTRTA 128 G++ GR+ E I R+I R +R + Q+ ++AD A Sbjct: 75 PGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMEAD----IA 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL +G + A G++ G +++ ++ + + D+D Sbjct: 131 AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 T+S ++ +E S+D + +A I + Sbjct: 178 LVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAA 226 >gi|328955438|ref|YP_004372771.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans PW2] gi|328455762|gb|AEB06956.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans PW2] Length = 761 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 87/234 (37%), Gaps = 28/234 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN----TKH 56 R+ GR+ +++R I + GS L + G T +L A + Sbjct: 319 RVDGRRADEIRPIMVKDAYLPLVHGSGLFQRGQTQVLSVLALGMLNESQRLDTIEPVEGK 378 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ +Y P STG + A R+ G + RAL V+ + I + Sbjct: 379 RYMH-QYNFPPFSTGETGRMGAPKRREIGHGH----LAERALLPVLPDESEFPYAIRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+ + +AL D +K V+ I+ G++ Sbjct: 434 EVLESNGSSSMASTCASCLALMD-------------GGVPIKRPVSGIAMGLIQENGKTV 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T+ G I +Q + + D L A+ Sbjct: 481 VLSDIQGIEDFLGDMDFKVTGTERG-ITALQMDNKATGLTFDILRQALEQARAG 533 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 73/218 (33%), Gaps = 27/218 (12%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 K A G+ LVK GDT LTT + ++ + G +P G +KRE Sbjct: 24 KQATGAALVKQGDTTALTTVVVSKERKNYDFFPLTVDFNEKLYAVGRIP---GGFLKRE- 79 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 GR + RMI R +R QI++ V + GA ++L Sbjct: 80 --GRASDKGTLTARMIDRPIRPSFPDGFRNEVQIVVTTLVADQTNPIDVISTMGASLSL- 136 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDS 196 +G +A + G G IV+ Y E D+D T Sbjct: 137 ------------TLGGVPFEGPLACVRIGRSGDSGEFIVNPTYEEIEASDLDLVLAGTRD 184 Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 I V+ A+ S+ A + + I Q Sbjct: 185 F-ISMVEAGADE--ISEQDMLAAMEFGQRAIGAFCDEQ 219 >gi|289423077|ref|ZP_06424892.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus anaerobius 653-L] gi|289156408|gb|EFD05058.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus anaerobius 653-L] Length = 696 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKH 56 +R R +++R I + GS + G T +L A + + + + Sbjct: 316 VRPDNRALDEIRPIWCETGLIPRTHGSAIFTRGQTQVLNVTTLGALGDGQKLDGLDEEDN 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ I + Sbjct: 376 KRYMHHYNFPAYSVGETRPSRGPGRREIGHG----ALAERALVPVIPSQDDFPYAIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ + ++L D ++D + + A+ + D Sbjct: 432 EVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHDKVAV---------LSD 482 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G + +Q + A + L AK ++ K Sbjct: 483 IQGMEDHLGDMDFKVAGTEHG-VTAIQMDIKIAGIDEQVLRQALKQAKAGRMHILGEMKK 541 Query: 237 VISNE 241 VI+ Sbjct: 542 VITEP 546 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 86/233 (36%), Gaps = 27/233 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++S+ + G+C++++GDT L+ AT + + + + G + Sbjct: 14 RKLSVEVGKICEMTNGNCIMRYGDTMLMVNATKSAEPRDGIDFFPLSVDFEEKLYSVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q++ + D Sbjct: 74 P---GGFLKRE---GKASEKAVLTSRLIDRPIRPLFPEGFRNDVQVVATVLSVDQDCTPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ +AL G ++ G++ G +V+ + Sbjct: 128 IVAMIGSSIALS-------------ISDIPFNGPTGSVLIGLVDGEFVVNPTQEQREVST 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I+ V+ AE + + A + I ++ +++++ Sbjct: 175 LHLVVSGTKDA-IMMVEAGAEE--IDDEIVLNAILFAHEEIKKIVAFIEEIVA 224 >gi|167772649|ref|ZP_02444702.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM 17241] gi|167665127|gb|EDS09257.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM 17241] Length = 706 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 26/228 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPM-WIRNTKHG 57 R+ GR+ +++R ++ + GS + G T +LT A T+ E + I + + Sbjct: 315 RVDGRKMDEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVATLGTISEAQKLDGIDDQEQK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL V+ I + + Sbjct: 375 RYIHHYNFPSYSVGETRPSRGPGRREIGHG----ALAERALEPVIPPVEEFPYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V+ ++G T +I G+ +AL D +K VA ISCG++ Sbjct: 431 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKRPVAGISCGLITEGDRWMT 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 +VD+ ED D+D T+ G I +Q + + D Sbjct: 478 MVDIQGLEDFFGDMDFKVGGTEKG-ITAIQMDLKIVGLTYDIIREAFE 524 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 36/226 (15%) Query: 13 EISLTRRV---SKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65 +++ A S LV++G+T +L T E + + + G Sbjct: 16 KMTFETGKMCCLSNA--SVLVRWGETVVLVNVTASAKPREGIDFFPLSVDFEEKLYAVGK 73 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P G+ +KRE+ R ++ R++ R +R + +++ + D Sbjct: 74 IP---GSFIKRES---RPSDKAILSSRLVDRPIRPLFPKDMRNDCSVVMTVMSVDPDCLP 127 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A + G AL G +A I+ G++ G IV D Sbjct: 128 EIAGMVGTSFALS-------------ISDIPWNGPIAGINVGLVDGEIIVSPDAA--QRA 172 Query: 186 DVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 D N V + I ++ A ML+ ++ Sbjct: 173 KSDLNLTVAANEDVICMIEAGANEVA-----NDVMLDAIIKGHEEI 213 >gi|153939959|ref|YP_001391710.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum F str. Langeland] gi|187610258|sp|A7GG00|PNP_CLOBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152935855|gb|ABS41353.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum F str. Langeland] Length = 702 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R GR +++R I + G+ L G T ++T AT + ++ I + Sbjct: 312 RPDGRAFDEVRPIGCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSQEEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + + I D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSDDLE-------REKVITDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S L AK ++ K+ Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539 Query: 238 ISNE 241 I Sbjct: 540 IPEP 543 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 86/236 (36%), Gaps = 31/236 (13%) Query: 12 REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64 R++ + + A + +GDT ++ A+ E + + + + G Sbjct: 12 RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVDYEERLYSVG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G +KRE G+ +S R I R LR + QI+ ++ D Sbjct: 70 KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPNGYRNDVQIVNTVLSVEQDNL 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI G+ +AL S VAA+S G++ G I++ + Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T I+ V+ + ++ + + + +++ Q++ ++ Sbjct: 171 TILDLTVCATKE-RIMMVEAGGQE--IDEETMYNAILFGFEECKNIVAFQEEAVAK 223 >gi|166712594|ref|ZP_02243801.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 704 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS V GS L G+T + TL + + G Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536 Query: 233 LQKDVISNE 241 ++ Sbjct: 537 EMAHALTTP 545 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +VKF DT LL TA + E + + G +P Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G +AA G G I++ E ++ Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTELKDSQLE 175 Query: 189 ANFVMTDSGHIV 200 T + ++ Sbjct: 176 LVVAGTANAVLM 187 >gi|290968451|ref|ZP_06559990.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp. type_1 str. 28L] gi|290781447|gb|EFD94036.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp. type_1 str. 28L] Length = 716 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 20/244 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55 +R GR+ +++R +S + G+ L G T +L+ ATL I T Sbjct: 312 IRPDGRKVDEVRPVSCEVGLFARTHGTGLFTRGQTQILSFATLAPLSEAQHIDGVGLETD 371 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 ++ Y S G R+ G ++ RAL V+ I + Sbjct: 372 RRYMH-HYNFPSFSVGETRSSRGPGRREIGHG----KLAERALVQVLPSEEEFPYAIRVV 426 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V++++G + ++ G+ +AL D ++ + V KG + Sbjct: 427 SEVLESNGSSSMGSVCGSTLALMDAGVPLQAPVAGVAMGLVTKGE---------DFTILT 477 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED+ D+D T G + +Q + ++ L A + ++ Sbjct: 478 DIQGMEDALGDMDFKVAGTTKG-VTAIQMDIKIKGLRREILEQALQQAHEGRLHIMGKML 536 Query: 236 DVIS 239 IS Sbjct: 537 TAIS 540 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 86/232 (37%), Gaps = 27/232 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +++ K A G+ LV++GDT + TAT E + + G + Sbjct: 13 RTLTVEVGKLAKQASGAALVRYGDTAVFVTATGAKEAREDADFFPLTVDYEEKMYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ + R+I R +R + + ++ + D Sbjct: 73 P---GGFIKRE---GKPPESATLFARLIDRPIRPLFPKTYRHEVHVVAYDFCVDHDNAPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA V+L G +A + G + G +++ + D Sbjct: 127 IAAMIGASVSLCM-------------SHIPFAGPIAGVRVGRVDGQFVINPTVVQSEKSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 +D T I+ V+G AE+ + + +A + I + Q+ + Sbjct: 174 MDFVVAGTKDA-ILMVEGGAEQVP--EADILDAIMVAHEEIKKAVAFQESFL 222 >gi|157368740|ref|YP_001476729.1| polynucleotide phosphorylase/polyadenylase [Serratia proteamaculans 568] gi|187611288|sp|A8G911|PNP_SERP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157320504|gb|ABV39601.1| Polyribonucleotide nucleotidyltransferase [Serratia proteamaculans 568] Length = 705 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +++ + + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAMMPKPEDFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEQDNFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 LTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + + G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGSARVGYINNQYVLNPTSDELKESSLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S+D + Sbjct: 177 LVVAGT-AGAVLMVE--SEADVLSEDQMLGAV 205 >gi|29347973|ref|NP_811476.1| polynucleotide phosphorylase/polyadenylase [Bacteroides thetaiotaomicron VPI-5482] gi|253572562|ref|ZP_04849964.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6] gi|81444021|sp|Q8A4N6|PNP_BACTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|29339875|gb|AAO77670.1| polyribonucleotide nucleotidyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|251837977|gb|EES66066.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6] Length = 708 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 RL GR+ ++R I GS + G+T LT+ T L+EK+ + Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDNVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + + Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + LN AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 DKITETIAEP 548 Score = 92.8 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57 GR I+L K A+GS +++ G+T LL T ++ VP ++ Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A +G P G KRE GR R++ RALR + + ++ ++ Sbjct: 66 EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ADG V + D L + + G ++ + + G +++ Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + D+D T +I+ V+G E S+ + +A + I K Q + Sbjct: 167 TFDQLEKADMDLMVAATYD-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKVHCKAQME- 222 Query: 238 ISNEV 242 ++ EV Sbjct: 223 LTEEV 227 >gi|254495070|ref|ZP_05107994.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152] gi|85819420|gb|EAQ40577.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152] Length = 746 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 79/230 (34%), Gaps = 20/230 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +RL GR+ +R I GS + G+T L T TL E Sbjct: 317 LRLDGRKTTDIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG S R+ G + RAL+ ++ + + Sbjct: 377 ETFYLHYNFPPFSTGEARPIRGTSRREVGHG----NLAQRALKGMIPAD--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +AL D ++ + + + G A+ + D Sbjct: 431 EVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAMGLISDGTNHAV---------LSD 481 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED D+D T G I Q + S + L A+D Sbjct: 482 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILVKALKQARDG 530 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R ISL K A GS +V+ G LL T ++ V + A G P Sbjct: 16 RTISLETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDVDFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHSETQVMIQMMSHDDD----- 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D + + + + ++ + G + G I++ + + D+ Sbjct: 125 --------VMPDAMAGLAASAAIQLSDLPFECPISEVRVGRVNGEFIINPTRAQLAEADI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + + ++ V+G E S++ + A + I Q Sbjct: 177 DM-MIGASADSVMMVEG--EMDECSEEEMAEAIKFAHEAIKVQCAAQ 220 >gi|148251685|ref|YP_001236270.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp. BTAi1] gi|187470940|sp|A5E870|PNP_BRASB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146403858|gb|ABQ32364.1| Polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp. BTAi1] Length = 720 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I V A GS L G+T L TL + T Sbjct: 316 RIDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+ V+ + + Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTTRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V +++G + A + G+ +AL D ++ + + +L+G A+ + D+ Sbjct: 432 VTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+SG I +Q + +++ L A++ ++ Sbjct: 483 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 38/236 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T + E V + G + Sbjct: 14 RPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQEKAYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTTLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL KG + A G I++ E + Sbjct: 128 ILAMVAASAAL-------------TLSGVPFKGPIGAARVGFANDEYILNPTLDEMTDTQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAER---------ATFSQDHF----FAMLNLAKDRIAD 229 +D T S ++ V+ A+ F HF A++ LA+ + Sbjct: 175 LDLVVAGT-SDAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKE 229 >gi|189459946|ref|ZP_03008731.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136] gi|189433319|gb|EDV02304.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136] Length = 727 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 RL GR+ ++R I Y GS + G+T L+T TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPYPHGSSIFTRGETQSLSTVTLGTKLDEKIVDDVLDQHKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYCVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGV-------------PIKNPVSGIAMGLIKNAGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T +G I Q + + D L AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKNG-ITATQMDIKCDGLTYDILEKALLQAKEGREYIL 538 Query: 232 KLQKDVISNE 241 + I Sbjct: 539 NKLTECIGKP 548 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 21/231 (9%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69 R I+L K A+G+ +++ G+T LL T ++ VP +Y R Sbjct: 15 RTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKYSAFGRF 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE G+ R++ RALR + + + ++ + ADG Sbjct: 75 PGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILYSADG------ 123 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 V + D L + + G ++ + + G +++ + + D+D Sbjct: 124 -----VDMPDALAGLAASAALTVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKADMDL 178 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T +I+ V+G E S+ L A + I K Q +++ Sbjct: 179 MVAATYE-NIMMVEG--EMNEVSEQDLLEALKAAHEAIKIHCKAQMELMEE 226 >gi|126640439|ref|YP_001083423.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii ATCC 17978] Length = 662 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R + + V + A GS L G+T L T TL + TK Sbjct: 282 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 341 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G R+ R +++V+ + I I D Sbjct: 342 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 397 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 398 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 444 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G I +Q + +++ LN A ++ Sbjct: 445 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 503 Query: 234 QKDVIS 239 VIS Sbjct: 504 MNKVIS 509 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 35/172 (20%) Query: 77 EAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADGGTRTA 128 G++ GR+ E I R+I R +R + Q+ ++AD A Sbjct: 40 PGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMEAD----IA 95 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL +G + A G++ G +++ ++ + + D+D Sbjct: 96 AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 142 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233 T+S ++ +E S+D + +A I + Sbjct: 143 LVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAA 191 >gi|123968917|ref|YP_001009775.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. AS9601] gi|187610314|sp|A2BSA7|PNP_PROMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123199027|gb|ABM70668.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. AS9601] Length = 721 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 36/238 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 REI LT + A GS +++ GDT LL TAT K + + +Y + Sbjct: 13 REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTAK----KEPSDFLPLICDYEEKLFAA 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122 G ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 69 GRIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPTWMGDEIQIVASCLSLDERVPAD 125 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 A+TGA +A G +AA+ G++ I++ Y E Sbjct: 126 ----VLAVTGASIA-------------TLVGEIPFYGPMAAVRVGLIGDDFILNPSYREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + + +LIK Q+D++ + Sbjct: 169 EKGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLQD 223 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 33/252 (13%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR +++R+IS + + K GS L + G T +L+T TL P + + Sbjct: 323 RVDGRDLDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380 Query: 61 AE------YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 E Y P S G R R G R + RA+ V+ + Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRT-----PGRREIGHGALAERAIIPVLPGKETFPYVLR 435 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171 + +V+ ++G T ++ G+ ++L D LK V+ + G++ Sbjct: 436 VVSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVSGTAMGLIKEGK 482 Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 + D+ ED D+D TD G I +Q + + A+ Sbjct: 483 EVRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVSIISDAIKKARPARIH 541 Query: 230 LIKLQKDVISNE 241 +++ + I Sbjct: 542 ILEKMQGAIDKP 553 >gi|229822930|ref|ZP_04449000.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271] gi|229787743|gb|EEP23857.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271] Length = 700 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 92/240 (38%), Gaps = 26/240 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + + GS L G T +LT AT E +V + + Sbjct: 318 VRPDGRRIDEIRPLSSSVALLPRVHGSGLFTRGQTQVLTAATLAPLGEHQVIDGLGIEEG 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL+ V+ I + Sbjct: 378 KRFIHHYNFPNFSVGETGR----VGSPGRREIGHGALGERALKQVIPAPEDFPYTIRLVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172 +V++++G + A+I +AL D +K VA I+ G++ G Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVMEGEDYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I +Q + ++ L AK +++ Sbjct: 481 VLTDIQGLEDHLGDMDFKVAGTAAG-ITALQMDIKIQGITEAILTEALTQAKKARLEILD 539 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67 R +S+ ++K A G+ LV++GDT +L+ A +K + + G +P Sbjct: 14 RPLSVEIGELAKQANGAVLVRYGDTVVLSAAVASKKAGTGDFFPLTVHYIEKMYAVGKVP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R LR + QI + D Sbjct: 74 ---GGFIKRE---GRPSEAATLTSRLIDRPLRPMFPEGVRNEIQITNTVLSVDQDCTPEM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ GA +AL G VA ++ G + G +++ + D+ Sbjct: 128 AAMLGASLALA-------------VSDIPFDGPVAGVNVGRVNGEIVINPTVAQAELSDI 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T + I V+ SA+ S+ L I +L+ Q ++++ Sbjct: 175 ELTVAGTATA-INMVESSAKE--VSEADMLEALLKGHAAIKELVAFQNEIVAQ 224 >gi|58582837|ref|YP_201853.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624704|ref|YP_452076.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577676|ref|YP_001914605.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv. oryzae PXO99A] gi|75434649|sp|Q5GXV3|PNP_XANOR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123739068|sp|Q2P0X5|PNP_XANOM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704832|sp|B2SVJ9|PNP_XANOP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|58427431|gb|AAW76468.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368644|dbj|BAE69802.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522128|gb|ACD60073.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 704 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R IS V GS L G+T + TL + + G Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536 Query: 233 LQKDVISNE 241 ++ Sbjct: 537 EMAHALTTP 545 Score = 69.0 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 24/192 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +VKF DT LL TA + E + + G +P Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + I R+I R +R + QII + D A Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G +AA G G I++ + ++ Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTDLKDSQLE 175 Query: 189 ANFVMTDSGHIV 200 T + ++ Sbjct: 176 LVVAGTANAVLM 187 >gi|242240745|ref|YP_002988926.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii Ech703] gi|242132802|gb|ACS87104.1| Polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech703] Length = 722 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + I + G T Sbjct: 331 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 390 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 391 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKPEAFPYTVRVVSE 446 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 447 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDSYVV 493 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 494 LSDILGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 552 Query: 234 QKDVISNE 241 + IS Sbjct: 553 MEQAISTP 560 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T + V +T Y + G Sbjct: 32 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHVKP---GQDFFPLTVNYQERTYAAGR 88 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 +RE GR I R+I R +R + Q+I + Sbjct: 89 IPGGFFRRE---GRPSEGETLISRLIDRPIRPLFPDGFFNEVQVIATVVSVNPQISPDIV 145 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 146 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKQSRLD 192 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T+ G ++ V+ +E ++D + ++ +I+ K +++ Sbjct: 193 LVVAGTE-GAVLMVE--SEADLLTEDQMLGAVVFGHEQQQVVIENIKSLVAE 241 >gi|163802308|ref|ZP_02196202.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4] gi|159173837|gb|EDP58651.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4] Length = 710 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T + TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTQTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + I+ Sbjct: 538 MDEAIAG 544 Score = 66.7 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + +V DT + + +++ + +T Y + G Sbjct: 17 VTLETGVIARQASAAVMVTMDDTAVFVSVVGKKEA---VAGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + S Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDSFKNEVQVIATVMSVNPDVQPDIV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + + G + G +++ E +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGSARVGHIDGQLVLNPSNTELDASKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+S ++ +E +++ A + D+ +IK + Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVYGHDQQQVVIKAINE 222 >gi|60359866|dbj|BAD90152.1| mKIAA4013 protein [Mus musculus] Length = 308 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P + G++ Sbjct: 55 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 113 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116 + P + R G + + + I ++ + V+ L G ++ C Sbjct: 114 NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 169 Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165 D+ + DG A AL + + + + K + ++ + A S Sbjct: 170 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATS 229 Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + IVD E+ V + G + + + + ++ A Sbjct: 230 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 288 Query: 225 DRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 289 TRHKEVSKLLDEVIQS 304 >gi|33152626|ref|NP_873979.1| polynucleotide phosphorylase/polyadenylase [Haemophilus ducreyi 35000HP] gi|81423299|sp|Q7VL91|PNP_HAEDU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33148850|gb|AAP96368.1| polyribonucleotide nucleotidyltransferase [Haemophilus ducreyi 35000HP] Length = 712 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R +++ V GS + G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALNICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVLAVMPSAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKATVAGIAMGLVKEDEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRKG-ITALQMDIKIEGITPEIMHIALNQAKGARMHILNV 535 Query: 234 QKDVI 238 + + Sbjct: 536 MEQAL 540 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + + ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVNYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + QI+ + Sbjct: 74 --GGFFKRE---GRPSENETLIARLIDRPIRPLFPEGFFNEIQIVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTITEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E S++ A + + +I+ K+ + Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLAAVVFGHQQQQIVIENIKEFVKE 224 >gi|257096719|sp|B3PXD7|PNP_RHIE6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 712 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I + GS L G+T + ATL ++ G Sbjct: 316 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ L+ A+ ++ Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAKA 541 Query: 238 ISN 240 I+ Sbjct: 542 ITE 544 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 31/222 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q+++ VIQ D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ AL G V G + G +++ E Sbjct: 126 PDILSMVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +D T ++ +E +D + Sbjct: 173 SSLDLVVAGTYDAVLMV---ESEAKELPEDVMLGAVMFGHKG 211 >gi|300718573|ref|YP_003743376.1| polyribonucleotide nucleotidyltransferase [Erwinia billingiae Eb661] gi|299064409|emb|CAX61529.1| Polyribonucleotide nucleotidyltransferase [Erwinia billingiae Eb661] Length = 714 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLFHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKADAFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 77/234 (32%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGKKTTKPGQDFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR I R+I R +R + + QII + Sbjct: 75 --GSFFRRE---GRPSEGETLISRLIDRPVRPLFPEGFINEVQIIATVVSVNPQVHPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G L +++ E +D Sbjct: 130 ALIGASAALSLSGL-------------PFNGPIGAARVGYLNDQYVLNPTTDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T G ++ V+ AE S+D + + Q+ V+ +++ Sbjct: 177 LVVAGTQ-GAVLMVESEAE--LLSEDQMLGAVVFGHE--------QQQVVIDQI 219 >gi|212550826|ref|YP_002309143.1| polynucleotide phosphorylase/polyadenylase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226702596|sp|B6YRB0|PNP_AZOPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|212549064|dbj|BAG83732.1| polyribonucleotide nucleotidyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 719 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 30/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R+ GR+ ++R I GS + G+T L T TL K+ I + Sbjct: 318 IRIDGRKTTEIRPIWSEVNPITGPHGSAIFTRGETQALATVTLGTKLNEKIIDDVLINDK 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P +TG + + R+ G + RAL+ ++ + I + Sbjct: 378 ERFLLHYNFPPFATGEARAQRGIGRREIGHG----NLAHRALKPIIPNN--YPYVIRVVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D+++++G + A + ++L D +K V+ I+ G++ Sbjct: 432 DILESNGSSSMATVCAGTLSLMDAGVQ-------------IKRPVSGIAMGLIFEKEGSK 478 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G I Q + S + L+ AK + Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTKKG-ITATQMDIKIDGLSYEVLERALSQAKQGREYI 537 Query: 231 IKLQKDVISNE 241 + + I Sbjct: 538 LDKMLETIPEP 548 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R I+L K A+G+ +++ +T +L T + V ++ + +G Sbjct: 15 RTITLETGKLAKQADGAIVLRMNNTMILATVCVAKDTNPCVDFLPLQVEYKEKFSAFGRF 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R+I R LR + ++ ++ + +DG Sbjct: 75 P---GGFTKRE---GRASDYEILTCRLIDRTLRPLFPRD--YHSEVFVNIILFSSDG--- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + + G ++ + + G ++ +GE + D Sbjct: 124 --------EDIPDALAGLAASAALSVSTIPFNGPISEVRVARIDGKFKINPTFGELAKAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D V + +I+ V+G E S++ + A + I K Q + Sbjct: 176 MDI-MVGATADNIMMVEG--EMNEVSEEEMLEAIKAAHEAIKPQCKAQIE 222 >gi|71278713|ref|YP_268932.1| polynucleotide phosphorylase/polyadenylase [Colwellia psychrerythraea 34H] gi|123774912|sp|Q482T5|PNP_COLP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|71144453|gb|AAZ24926.1| polyribonucleotide nucleotidyltransferase [Colwellia psychrerythraea 34H] Length = 705 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R + + V GS + G+T L TATL + +T G T Sbjct: 315 RIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGTQRDAQRLDTLMGDKTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 375 PFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGMLAVMPSLEEFPYAVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGEKFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +Q+ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGT-TGGITALQMDIKIEGITQEIMQIALNQAKAARTHILSV 536 Query: 234 QKDVISNE 241 + I Sbjct: 537 MDEAIGGH 544 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L +++ A + + DT +L + +++ +T Y + G Sbjct: 16 VTLETGAIARQASAAVMASMDDTCVLVSVVGKKEAKP---GQDFFPLTVNYQERAYAAGK 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + KRE GR I R+I R +R + Q+II + + Sbjct: 73 IPGSFFKRE---GRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSVNPEIAPDII 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G V A G G I++ E T +D Sbjct: 130 SLIGTSAALA-------------ISGLPFSGPVGAARVGYTDGQYILNPLQSELPTSQLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TDS ++ +E S++ + +++ + K+ Sbjct: 177 LVVSGTDSAVLMV---ESEADVLSEEVMLGAVVYGHEQMQVAVSAIKE 221 >gi|190889779|ref|YP_001976321.1| polyribonucleotide nucleotidyltransferase [Rhizobium etli CIAT 652] gi|190695058|gb|ACE89143.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli CIAT 652] Length = 706 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I + GS L G+T + ATL ++ G Sbjct: 310 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 369 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 370 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 425 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + +L+G A+ + D+ Sbjct: 426 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 476 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ L+ A+ ++ Sbjct: 477 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAKA 535 Query: 238 ISN 240 I+ Sbjct: 536 ITE 538 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 31/222 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 8 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 67 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q+++ VIQ D Sbjct: 68 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLENN 119 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ AL G V G + G +++ E Sbjct: 120 PDILSMVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 166 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +D T ++ +E +D + Sbjct: 167 SSLDLVVAGTYDAVLMV---ESEAKELPEDVMLGAVMFGHKG 205 >gi|148703331|gb|EDL35278.1| exosome component 8, isoform CRA_f [Mus musculus] Length = 283 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P + G++ Sbjct: 30 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 88 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116 + P + R G + + + I ++ + V+ L G ++ C Sbjct: 89 NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 144 Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165 D+ + DG A AL + + + + K + ++ + A S Sbjct: 145 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATS 204 Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + IVD E+ V + G + + + + ++ A Sbjct: 205 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 263 Query: 225 DRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 264 TRHKEVSKLLDEVIQS 279 >gi|293393150|ref|ZP_06637465.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM 4582] gi|291424296|gb|EFE97510.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM 4582] Length = 706 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +++ + + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAMMPKPEDFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEQDNFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + + L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFSGPIGAARVGYINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T+ G ++ V+ +E S+D + Sbjct: 177 LVVAGTE-GAVLMVE--SEADVLSEDQMLGAV 205 >gi|164660188|ref|XP_001731217.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966] gi|159105117|gb|EDP44003.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966] Length = 253 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 22/188 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ + R + L + A GS L++ G T ++ + +V + Sbjct: 20 VRPDGRKAEEPRPLYLQTGIIPSASGSTLLESGHTKIVCSVHGPRQV-RGRHYAGKAEVN 78 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEI---QRMIGRALRSVVDLSALGSRQIIIDCD 117 ++ M P S R R E +I +AL + L L I + Sbjct: 79 VQFEMAPFSEKERR---------SSRDTEAPVPAALIQQALLPAIRLDLLPKSSIDVHIT 129 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V+ +D ++ G + L V AIS Sbjct: 130 VLDSD-----TSMLGCAAMGATAASAALAEAGVQMLGLVTGATATAISTLPSTNKAQQLW 184 Query: 174 IVDLDYGE 181 +VD + E Sbjct: 185 LVDPTHRE 192 >gi|2815604|gb|AAC39558.1| Opa-interacting protein OIP2 [Homo sapiens] Length = 265 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 24/216 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G++ Sbjct: 21 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVP 79 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115 + P + SG G +Q + I + ++ L + + + Sbjct: 80 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 134 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 135 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 194 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHI 199 S + IVD E+ VM + G + Sbjct: 195 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKL 230 >gi|319408006|emb|CBI81660.1| polyribonucleotide nucleotidyltransferase [Bartonella schoenbuchensis R1] Length = 733 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR + +R I + A GS L G+T L ATL +E+ + T Sbjct: 317 RIDGRTLSTVRSIQSEVGILPRAHGSALFTRGETQALVIATLGTSEDEQYIDSLTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G ++ RA+ ++ I + Sbjct: 377 TFLLHYNFPPFSVGETGRISSPGRREIGHG----KLAWRAIHPMLPTKDSFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G AI + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAI---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G I +Q + +++ L AKD ++ Sbjct: 484 LGDEDHLGDMDFKVAGTKNG-ITSLQMDIKIDGITEEIMKIALEQAKDGRIHILNEMSKA 542 Query: 238 ISN 240 +++ Sbjct: 543 LTS 545 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 79/233 (33%), Gaps = 35/233 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLILETGKIARQADGAVLATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEKTYAVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE+ R I R+I R +R + Q+I+ VIQ D Sbjct: 74 P---GGYFKRES---RPSENETLISRLIDRPIRPLFVDGYKNDTQVIVS--VIQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ + AL G +A G G +++ E Sbjct: 126 PDILAMIASSAALTLSGI-------------PFVGPIAGARVGYCNGQYVLNPHIDEMPE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233 +D T++ ++ +E +D + + I +IKL Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAQELPEDVMLGAVIFGQKGFQPVIDAIIKL 222 >gi|149276240|ref|ZP_01882384.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39] gi|149232760|gb|EDM38135.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39] Length = 715 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 89/249 (35%), Gaps = 28/249 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +RL GR +R I A GS + G+T LTT TL K + + + Sbjct: 316 IRLDGRDVRTVRPIWSEVGYLPSAHGSAVFTRGETQSLTTVTLGSKDDEQMIDGAFINGY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y STG R+ G + R+L+ V+ I I Sbjct: 376 NKFLLHYNFPGFSTGEVRPNRGAGRREIGHG----NLAMRSLKKVLPGIEENPYTIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D+++++G + A + +AL D +K V+ I+ G++ Sbjct: 432 DILESNGSSSMATVCAGTLALMDAGIK-------------IKAPVSGIAMGLITDEKTGK 478 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G IV Q + + LN AK+ + Sbjct: 479 YAILSDILGDEDHLGDMDFKVTGTEKG-IVACQMDLKINGLKWEVLTNALNQAKEARLHI 537 Query: 231 IKLQKDVIS 239 + K I+ Sbjct: 538 LNEMKKTIA 546 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 29/231 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I + K A+GS +V+ GDT LL T + V + + A G + Sbjct: 14 RTIEIETGKLAKQADGSVVVRMGDTMLLATVVSTVGAKSGVDFLPLSVDYQEKYAAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++REA R I R++ RALR + Q++I +I +D Sbjct: 74 P---GGFLRREA---RLSDYEVLISRLVDRALRPMFPEDYHSDTQVMIT--LISSDKNI- 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED-STI 185 + DCL + + G ++ + + G +++ Y D Sbjct: 125 ----------MPDCLAGLAASAAIAVSDIPFNGPISEVRVAKIDGQFVINP-YVSDLERA 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ T++ IV V+G A+ S+ + A I ++ QK+ Sbjct: 174 TMEFLVAGTEND-IVMVEGEADE--ISESDMVEAIEFAHKAIVVQVQAQKE 221 >gi|260461975|ref|ZP_05810220.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium opportunistum WSM2075] gi|259032222|gb|EEW33488.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium opportunistum WSM2075] Length = 715 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I V GS L G+T L ATL ++ G Sbjct: 317 RIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 377 KFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSADQFPYTLRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T SG I +Q + +++ L+ AKD ++ Sbjct: 484 LGDEDHLGDMDFKVAGTTSG-ITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHA 542 Query: 238 I 238 + Sbjct: 543 L 543 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTT-ATLEEKVP---MWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T +++E P + + T G + Sbjct: 14 RPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + QI++ V+Q D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVT--VVQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 +I AL G V G + G +++ E Sbjct: 126 PDILSIVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E ++ + +I Sbjct: 173 SKLDLVVAGTADAVLMV---ESEAKELGEELMLGAVMFGHRGFQPVIDA 218 >gi|300779041|ref|ZP_07088899.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum ATCC 35910] gi|300504551|gb|EFK35691.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum ATCC 35910] Length = 751 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 84/246 (34%), Gaps = 20/246 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55 +RL GR +R I A GS + G+T LT TL + I Sbjct: 322 IRLDGRDPQTIRPIWSEIDYLPGAHGSAIFTRGETQSLTAVTLGSVKDANMIDSVITQHD 381 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P STG S R+ G + RAL +V+ I I Sbjct: 382 ERFF-LHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALTAVIPAE--NPYTIRIV 434 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 D+++++G + A + +AL D + + + G + G + Sbjct: 435 SDILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAM-----GLITDTKSGKF--TVLS 487 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I Q + S D L AKD ++ Sbjct: 488 DILGDEDHLGDMDFKVTGTADG-ITACQMDIKIQGLSMDIMEKALMQAKDGRLHILNKIT 546 Query: 236 DVISNE 241 + IS Sbjct: 547 ETISQP 552 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 79/234 (33%), Gaps = 24/234 (10%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 REI++ K A+GS +VK G T LL T ++ +T +Y Sbjct: 17 REITIETGKLAKQADGSVVVKCGGTMLLATVVANKEANP---GVDFLPLTVDYR-EKFYA 72 Query: 71 GNRVKREAVSG--RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G R+ + R++ R LR + Q++I +I D Sbjct: 73 GGRIPGNFFRREAKPSDDEVLTMRLVDRVLRPLFPEDFHAEVQVMIS--LISYD------ 124 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + + L + + G ++ + G V+ Y D+D Sbjct: 125 -----KEVMPEALAGLAASAAIAITDIPFNGPMSEARVVRIDGELSVNPSYENLLKSDID 179 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T IV V+G E S+ +N A I I+ Q + ++ +V Sbjct: 180 IMVGATKD-SIVMVEG--EMKEISEQEMLEAINFAHAEIRKQIEAQ-ERLAAKV 229 >gi|120556251|ref|YP_960602.1| polynucleotide phosphorylase/polyadenylase [Marinobacter aquaeolei VT8] gi|187610283|sp|A1U5Z6|PNP_MARAV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120326100|gb|ABM20415.1| Polyribonucleotide nucleotidyltransferase [Marinobacter aquaeolei VT8] Length = 722 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T + TATL + I + G Sbjct: 334 RIDGRDNKTVRPIKVEVGVLPSVHGSALFTRGETQAIVTATLGTTRDVQIIDALEGERKD 393 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R R+ R + +V+ I + Sbjct: 394 PFLFHYNFPPYSVGEAGR----MGSPGRREIGHGRLAKRGVAAVMPTIEEFPYAIRAVSE 449 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G+ +AL D LK VA I+ G++ Sbjct: 450 ITESNGSSSMASVCGSSLALMDAGV-------------PLKAPVAGIAMGLVKEGDKFAV 496 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + L A ++ Sbjct: 497 LTDILGDEDHLGDMDFKVAGTKEG-VTALQMDIKIQGITDEIMEIALEQANAARLHILDE 555 Query: 234 QKDVISNE 241 VI+ Sbjct: 556 MNKVIAEP 563 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 73/229 (31%), Gaps = 28/229 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 +L +++ A G+ LV GDT +L T ++ +T Y + G Sbjct: 33 FTLETGRIARQATGAVLVSTGDTAVLGTVVGAKEPKP---GQGFFPLTVNYQEKTYAAGK 89 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR + R+I R +R + + Q+++ Sbjct: 90 IPGGFFKRE---GRPSEKETLTSRLIDRPIRPLFPNGYMNEVQVVLTV------------ 134 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187 ++ + D + + G + A G ++ + E ST + Sbjct: 135 -MSASKNHDPDIAAMIAASAALAISGIPFDGPIGAARVGYTNEKGYFLNPTFEELSTSLL 193 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D TD ++ +E ++D + + I K+ Sbjct: 194 DMVVAGTDEAVLMV---ESEAKGLTEDQMLGAVLFGHQEMQTAITAIKE 239 >gi|13474634|ref|NP_106203.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium loti MAFF303099] gi|81778152|sp|Q98BI3|PNP_RHILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|14025388|dbj|BAB51989.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium loti MAFF303099] Length = 715 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I V GS L G+T L ATL ++ G Sbjct: 317 RIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 377 KFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSADQFPYTLRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G I +Q + +++ L+ AKD ++ Sbjct: 484 LGDEDHLGDMDFKVAGTANG-ITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHA 542 Query: 238 I 238 + Sbjct: 543 L 543 Score = 84.0 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTT-ATLEEKVP---MWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T +++E P + + T G + Sbjct: 14 RPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + QI++ V+Q D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVT--VVQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 +I AL G V G + G +++ E Sbjct: 126 PDILSIVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E ++ + +I Sbjct: 173 SKLDLVVAGTADAVLMV---ESEAKELGEELMLGAVMFGHKGFQPVIDA 218 >gi|170743024|ref|YP_001771679.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp. 4-46] gi|226702664|sp|B0UEX5|PNP_METS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|168197298|gb|ACA19245.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium sp. 4-46] Length = 725 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 90/241 (37%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I V A GS L G+T L ATL + G Sbjct: 316 RIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + + + + Sbjct: 376 TFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVHPLLPPAHEFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G+ +AL D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERYAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + A +++ L+ AK+ A ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEEG-VTSLQMDIKIAGITEEIMRVALDQAKEGRAHILGEMAKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 89/255 (34%), Gaps = 48/255 (18%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWITAEYGMLPRS 69 R++ L V++ A+G+ + +G+T +L T +++E P +T Y + Sbjct: 14 RKLVLETGKVARQADGAVVASYGETTVLATVVSMKEPKP----GIDFLPLTVNYQERAYA 69 Query: 70 TG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 G KRE GR + + R+I R +R + Q+++ + Sbjct: 70 AGRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDP 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 ++ A AL G + A G L G ++ E Sbjct: 127 DIVSMVAASAAL-------------TLSGVPFMGPIGAARVGYLGGQYKLNPTVQEMEES 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD--- 229 +D TD+ ++ V+ A+ F HF ++ LA+ + Sbjct: 174 SLDLVVAGTDAA-VLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRD 232 Query: 230 -----LIKLQKDVIS 239 L +++K V+ Sbjct: 233 FQPTDLTEVEKAVLE 247 >gi|18250193|gb|AAK73855.2|AC092690_1 Hypothetical protein BE0003N10.1 [Caenorhabditis elegans] Length = 745 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 22/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--------TTATLEEKVPMWIR 52 +R GR+ ++ R I++ + K G + + G T ++ A + V + Sbjct: 333 IRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 392 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 + + Y + +++ R+ G + ++L+++ Sbjct: 393 SQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHG----ALAEKSLKNLFPAD-FPYAT- 446 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + C V++++G + A++ G +AL D M++ + + G ++ + Sbjct: 447 RLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAI-----GLISDEAEPETKYR 501 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G Q + ++ L A+ I + Sbjct: 502 VLTDILGIEDYAGDMDFKVAGTRDG-FTAAQLDVKNGGLTRRQLTESLQAARAGIDHV-- 558 Query: 233 LQK 235 LQK Sbjct: 559 LQK 561 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 75/227 (33%), Gaps = 25/227 (11%) Query: 19 RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG-NRVKRE 77 ++++A + + FGD ++ T V + + + P ++ R+ Sbjct: 44 HLARFASSTVVASFGDNAVMATV-----VQRKSKQGDGSGVPLQVEYRPSASAIGRIPTN 98 Query: 78 AVSGR--QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 + Q I R I R++R ++ ++ QII + + I A Sbjct: 99 FLRRELSQSDNEILISRAIDRSIRPLLPGNSY-ETQIICKPLALDENADQIMLGINAAST 157 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANFVMT 194 AL S G +AA+ G V+ E ++ M Sbjct: 158 ALQ-------------ISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAMR 204 Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 V ++ + S +H L++A +A L + + + + Sbjct: 205 KHEKTVMIELDGRES--SAEHLEHALDVAFRHVAKLHEAMEQLTAEP 249 >gi|313204132|ref|YP_004042789.1| polyribonucleotide nucleotidyltransferase [Paludibacter propionicigenes WB4] gi|312443448|gb|ADQ79804.1| polyribonucleotide nucleotidyltransferase [Paludibacter propionicigenes WB4] Length = 713 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 30/248 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR+ ++R I A GS + G+T LTT TL K+ + + Sbjct: 318 RLDGRKTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKMDEKLVDDALFKGKE 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG V R+ G + RAL++++ + + + D Sbjct: 378 RFLLHYNFPPFSTGEAKASRGVGRREVGHG----NLALRALKNMIPEN--YPYVVRVVSD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 432 ILESNGSSSMATVCAGTLALMDAGVQ-------------IKKPVSGIAMGLISENKGKNF 478 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + LN AK ++ Sbjct: 479 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILETALNQAKAGRMHIL 537 Query: 232 KLQKDVIS 239 ++ + Sbjct: 538 GKIQETLE 545 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA-TLEEKVP---MWIRNTKHGWITAEYGML 66 R IS+ K A+GS +V+ GDT LL T + ++ VP + + A +G Sbjct: 14 RTISIETGKLAKQADGSVMVRMGDTMLLATVCSAQDAVPGTDFMPLSVDYKEKYAAFGRF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R++ RALR + ++ ++ +DG Sbjct: 74 P---GGFLKRE---GRASDYEILVSRLVDRALRPLFPDDFHAET--FVNVMLVSSDG--- 122 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + D L + + G ++ + + G +++ + + +T D Sbjct: 123 --------EDMPDALAGLAASAALAVSDVPFNGPISEVRVARIDGQFVINPTFAQLATAD 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ T +I+ V+G E S++ + +A + I ++Q + Sbjct: 175 LEIMVAATID-NIMMVEG--EMKEVSEEVLLEAMKVAHEAIKVHCQVQLE 221 >gi|86608913|ref|YP_477675.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502399|sp|Q2JLJ5|PNP_SYNJB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|86557455|gb|ABD02412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 712 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR+ +++R +S + GS L G T +L+ TL + Sbjct: 321 VRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLSITTLGTPGDAQELDDLHPVDE 380 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + R+ G + RAL V+ + + Sbjct: 381 KRYMHHYNFPGFSVGETRPSRSPGRREIGHG----ALAERALVPVLPKEEEFPYVVRVVS 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V+ ++G T ++ G+ ++L D +K V+ ++ G++ Sbjct: 437 EVLSSNGSTSMGSVCGSTLSLMDAGV-------------PIKAPVSGVAMGLIKEGDEVR 483 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I +Q + + D + AK ++ Sbjct: 484 ILTDIQGIEDFLGDMDFKVAGTRAG-ITALQMDMKITGITVDVVEQAIRQAKAGREFILD 542 Query: 233 LQKDVIS 239 + I+ Sbjct: 543 KMLETIA 549 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 12 REISLTRRVSKYAEGS-CLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 REI + + G + G+T +L TAT V + G +P Sbjct: 13 REIDINIGLMAPQAGCGVWLTSGETSILVTATRQPGRPGVDFMPLLVDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR R+ I R+I R +R + Q++ + Sbjct: 73 ---GGYLRRE---GRPPERATLISRLIDRPIRPLFPEWLRDDVQVVATTLSVDDTVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I GA +A+H G VAA+ G++ I++ Y E D+ Sbjct: 127 LCILGASLAIHGA-------------RIPFNGPVAAVRVGLVKDEFILNPTYAEIEAGDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D G ++ V+ A + + + + I +L+K Q+ V+++ Sbjct: 174 DLVVAGCADG-VIMVEAGANQ--LPEKDVVEAIEFGFEAIQELLKAQQQVLAD 223 >gi|2462716|emb|CAA71697.1| pnp [Yersinia enterocolitica] Length = 711 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 320 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 380 SFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 436 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 482 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 483 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 541 Query: 234 QKDVISNE 241 + IS Sbjct: 542 MEQAISTP 549 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 21 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 79 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 80 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 134 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 135 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 181 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S+D + Sbjct: 182 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 210 >gi|270265063|ref|ZP_06193326.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera 4Rx13] gi|270040997|gb|EFA14098.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera 4Rx13] Length = 686 Score = 105 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + G T Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 353 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +++ + + + Sbjct: 354 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAMMPKPEDFPYTVRVVSE 409 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 410 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEQDNFVV 456 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 457 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 515 Query: 234 QKDVISNE 241 + IS Sbjct: 516 MEQAISTP 523 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 26/203 (12%) Query: 22 KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77 + A + +V DT + T + + + T G +P G+ +RE Sbjct: 4 RQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP---GSFFRRE 60 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 GR R+I R +R + S L Q+I + A+ GA AL Sbjct: 61 ---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G + A G + +++ E +D T +G Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGT-AG 163 Query: 198 HIVEVQGSAERATFSQDHFFAML 220 ++ V+ +E S+D + Sbjct: 164 AVLMVE--SEADVLSEDQMLGAV 184 >gi|114329015|ref|YP_746172.1| polynucleotide phosphorylase/polyadenylase [Granulibacter bethesdensis CGDNIH1] gi|122326039|sp|Q0BPK3|PNP_GRABC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114317189|gb|ABI63249.1| polyribonucleotide nucleotidyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 720 Score = 105 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I + A GS L G+T L ATL + + G Sbjct: 314 IRIDGRDTRTVRPIIGEVGILPRAHGSALFTRGETQALCVATLGTGQDEQVVDALTGEYR 373 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+ V+ + + Sbjct: 374 SHFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAVHPVLPAKDAFPYTLRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A + G+ +AL D LK VA I+ G++ Sbjct: 430 EITESNGSSSMATVCGSSLALMDAGV-------------PLKRPVAGIAMGLIKEDRAFA 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G + +Q + + + + L A+D ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGTEQG-VTSLQMDIKITSITTEIMRIALQQARDGRMHILG 535 Query: 233 LQKDVI 238 I Sbjct: 536 EMAKAI 541 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 76/227 (33%), Gaps = 27/227 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + L +++ A+G+ L + GDT +L TA +T Y + Sbjct: 14 RTLVLETGKIARQADGAVLARLGDTIVLCTAVG---AKSAKAGQDFFPLTVNYQEKAFAA 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + R+I R +R + Q+I + Sbjct: 71 GKIPGGFFKRE---GRPSEHETLVSRLIDRPIRPLFPEGFYNEVQVIATVLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G AL G VAA G++ G +++ + + Sbjct: 128 IVALIGCSAALTLSGI-------------PFFGPVAASRVGLVNGAFVLNPTLEQRAESK 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T G ++ V+ AE S+D A + +I Sbjct: 175 LDLVVAGTAEG-VLMVESEAEE--LSEDQMLAAVEFGHKGFQPVIDA 218 >gi|260771810|ref|ZP_05880728.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP 69.14] gi|260613102|gb|EEX38303.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP 69.14] Length = 711 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 96/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMIRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y P G + R+ G R+ R + +V+ + + + + Sbjct: 376 YFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSADEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEDENFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVISN 240 I+ Sbjct: 538 MDQAIAG 544 Score = 63.6 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 77/234 (32%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT + + + E + + T G +P Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKDAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + + Q+I + + Sbjct: 76 --GGFFKRE---GRPSESETLIARLIDRPIRPLFHDAFTNEVQVIATVVSVNPNVQPDIV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E +D Sbjct: 131 TMIGTSAALA-------------ISGMPFNGPIGAARVGHINGQLVLNPSPKELDQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T+ G ++ V+ +E S++ A + D Q+ V+ N + Sbjct: 178 LVVAGTE-GAVLMVE--SEADILSEEEMLAAVVYGHD--------QQQVVINAI 220 >gi|45595709|gb|AAH67250.1| Exosc8 protein [Mus musculus] Length = 270 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P + G++ Sbjct: 17 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 75 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116 + P + R G + + + I ++ + V+ L G ++ C Sbjct: 76 NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 131 Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165 D+ + DG A AL + + + + K + ++ + A S Sbjct: 132 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATS 191 Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + IVD E+ V + G + + + + ++ A Sbjct: 192 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 250 Query: 225 DRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 251 TRHKEVSKLLDEVIQS 266 >gi|240849876|ref|YP_002971264.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii as4aup] gi|240266999|gb|ACS50587.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii as4aup] Length = 731 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 87/243 (35%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R I + GS L G+T + ATL ++ G Sbjct: 317 RIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G ++ RA+ ++ I + Sbjct: 377 TFLLHYNFPPFSVGETGRFGSPGRREIGHG----KLAWRAIHPMLPTKESFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ L AK ++ Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKA 542 Query: 238 ISN 240 +++ Sbjct: 543 LTS 545 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ + +G+T +L T + + + + + G + Sbjct: 14 RPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYAVGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G +KRE+ R + R+I R +R + Q+I+ VIQ D Sbjct: 74 P---GGYLKRES---RPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVS--VIQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ + AL G +A G G +++ E Sbjct: 126 PDILAMIASSAAL-------------TLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T+S ++ +E +D + + ++ Sbjct: 173 SKLDLVVAGTESAVLMV---ESEAQELPEDIMLGAVMFGHKGLQPVLDA 218 >gi|254692991|ref|NP_081424.3| exosome complex component RRP43 isoform 2 [Mus musculus] gi|21759414|sp|Q9D753|EXOS8_MOUSE RecName: Full=Exosome complex component RRP43; AltName: Full=Exosome component 8; AltName: Full=Ribosomal RNA-processing protein 43 gi|22208743|emb|CAD43467.1| CBP-interacting protein 3 [Mus musculus] gi|148703329|gb|EDL35276.1| exosome component 8, isoform CRA_d [Mus musculus] Length = 276 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P + G++ Sbjct: 23 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116 + P + R G + + + I ++ + V+ L G ++ C Sbjct: 82 NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 137 Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165 D+ + DG A AL + + + + K + ++ + A S Sbjct: 138 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATS 197 Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + IVD E+ V + G + + + + ++ A Sbjct: 198 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 256 Query: 225 DRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 257 TRHKEVSKLLDEVIQS 272 >gi|194741988|ref|XP_001953491.1| GF17196 [Drosophila ananassae] gi|190626528|gb|EDV42052.1| GF17196 [Drosophila ananassae] Length = 771 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 17/249 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------- 54 R GR +Q+R IS + K GS L + G T + T +L+ ++ Sbjct: 355 RCDGRSYDQLRNISCQVDLYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDSLAALESG 414 Query: 55 --KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K Y P +TG + G G R + R L + + Sbjct: 415 GLKAKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERGLLPTLPHD--YPFTV 468 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A++ G +AL D + + + V K + + Sbjct: 469 RLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTKYE-NDDTKHLQDYR 527 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G +Q + L A D + ++ Sbjct: 528 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 586 Query: 233 LQKDVISNE 241 + + I Sbjct: 587 IMGEAIREP 595 Score = 84.8 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 88/232 (37%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R ++ + ++++A GS + + GDT ++ TA + K + +Y + ++ Sbjct: 50 RNMTFSSGRLARFANGSSVCQMGDTAVMVTAVAKAKPTP---GQGFMPLVVDYRLKNAAS 106 Query: 71 GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G R+ + G +EI R+I R+LR + Q++ + + A Sbjct: 107 G-RIPMNFMRREMGPSEKEILSARLIDRSLRPLFSKDYRTETQLVCNMLAMDAVHSPDVL 165 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 AI A +AL G + A+ G+ G +++ E + +D Sbjct: 166 AINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQLD 212 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236 T +V ++G + Q + A+ I ++ +LQK Sbjct: 213 LVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262 >gi|117618225|ref|YP_857790.1| polynucleotide phosphorylase/polyadenylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|187470961|sp|A0KND9|PNP_AERHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117559632|gb|ABK36580.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 712 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R +S+ V A GS L G+T + ATL + + + Sbjct: 314 RIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTERDAQNIDELTGNRAD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + + Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHG----RLAKRGVAAVMPSADEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEEEGFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A+ ++K+ Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEG-VTALQMDIKIEGITKEIMEIALKQARGARLHILKV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MDEAI 540 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + T + + + T G +P Sbjct: 15 VTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R +R + L Q++ + Sbjct: 74 --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E D+D Sbjct: 129 AMIGASAALAISGI-------------PFGGPIGAARVGYMNGQYVLNPTTTELPQSDLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + ++ +E A S++ + +++ +I + Sbjct: 176 LVVAGTANAVLMV---ESEAAILSEEVMLGAVVFGHEQMQAVINAINE 220 >gi|302380540|ref|ZP_07269005.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ACS-171-V-Col3] gi|302311483|gb|EFK93499.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ACS-171-V-Col3] Length = 714 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R R+ +Q+REI+ + GS L K G T +L+ TL + + + Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIDQED 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G+ + R+ G + RAL V+ I + Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 +V+ ++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGV-------------PIKEPVAGIAMGLIKADDNVV 474 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 I+ D+ ED D+D T G I +Q + S++ L A+ ++ Sbjct: 475 ILSDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILS 533 Query: 233 LQKDVISNE 241 L + IS Sbjct: 534 LMNECISEP 542 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 +I +T V++ A G+CL++ G+T LL TA E V + G +P Sbjct: 13 KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R LR + Q+I + D Sbjct: 73 ---GGFIKRE---GRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ G+ +AL G +++ GM+ G I++ + D+ Sbjct: 127 LAMIGSSIALS-------------ISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKD 236 + T I+ V+ A ++ + A + I + + +QK+ Sbjct: 174 ELTVAGTKDA-IMMVE--AGCNNITEQQVLKAILRAHEEIKKICEFIESIQKE 223 >gi|187934276|ref|YP_001885477.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum B str. Eklund 17B] gi|226702638|sp|B2TJ61|PNP_CLOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187722429|gb|ACD23650.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B str. Eklund 17B] Length = 704 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 87/244 (35%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R GR +++R + + G+ L G T ++T AT + ++ I + Sbjct: 312 RPDGRAFDEVRPLGCEIGLLPRTHGTGLFTRGLTQVMTVATLGAVGDIQILDGIDEAQSK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ I + + Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + ++ + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLS-------EEQVLTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + FS + + A+ ++ + Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLKGFSFNVVENAIRDARKARMTILDKINEC 539 Query: 238 ISNE 241 IS+ Sbjct: 540 ISSP 543 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 26/214 (12%) Query: 31 KFGDTHLL--TTATLEEKV--PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGR 86 +GDT +L A+ E +V + + ++ G +P G +KRE GR + Sbjct: 32 SYGDTVILTNVNASSEPRVGIDFFPLSVEYEERLYAVGKIP---GGFIKRE---GRPSEK 85 Query: 87 SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146 + R + R LR + Q++ ++ D AI A +AL Sbjct: 86 AILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAINAASMALC-------- 137 Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206 S VAA+ G++ IV+ + E + T ++ ++ Sbjct: 138 -----LSSIPFTIPVAAVQVGLIDNNFIVNPNATEREESTLHLTVCATKE-RVMMIEAGG 191 Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D + D +I Q++ +S Sbjct: 192 NEIP--EDIMIDAIKFGFDECQKIINFQEEAVSK 223 >gi|288556936|ref|YP_003428871.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus OF4] gi|288548096|gb|ADC51979.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus OF4] Length = 704 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56 +R GR +++R ++ + GS L G T L T A + ++ + + Sbjct: 313 VRPDGRAIDEIRPLASQVDLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEES 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G G R + RAL ++ I + Sbjct: 373 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEPIIPSENDFPYTIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G T A+I + +A+ D +K VA I+ G++ Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKQDEHLT 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + + +++ L AK ++ Sbjct: 476 VLTDIQGMEDALGDMDFKVAGTKEG-VTALQMDIKISGINREVLEQALEQAKRGRMVILD 534 Query: 233 LQKDVISN 240 IS Sbjct: 535 NMLSAISE 542 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 RE+++ +K A G+ LV++GDT +L+T T +N +T Y + Sbjct: 15 RELTVETGQFAKQANGAVLVRYGDTAVLSTVT----ASKEPKNLNFFPLTVNYEERLYAA 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR ++ R+I R +R + Q+I + + + Sbjct: 71 GKIPGGFIKRE---GRPSEKAILASRLIDRPIRPLFPDGFRNEVQVISIVMSVDQNCSSE 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +AL G +A ++ G G I++ + D Sbjct: 128 MAAMIGSSLALS-------------ISDIPFDGPIAGVTVGRKDGELIINPTTEQLEESD 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 +D T I V+ A+ ++ + D I L+ Q++V+ Sbjct: 175 IDLVVAGTKDA-INMVEAGADEVP--EETMLEAIMYGHDEIKRLVAFQEEVV 223 >gi|262274879|ref|ZP_06052690.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP 101886] gi|262221442|gb|EEY72756.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP 101886] Length = 709 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+++ +R + + V GS L G+T L TATL + I + G T Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDEITGERTD 373 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 374 NFLFHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSQEEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKKSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD G + +Q + +++ LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILNV 535 Query: 234 QKDVISN 240 IS+ Sbjct: 536 MDQAISS 542 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 15 VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKDAVEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + Q+I + + Sbjct: 74 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDHFKNEVQVIATVVSVNPNVNPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G + +++ E +D Sbjct: 129 AMIGTSAALSISGI-------------PFNGPIGAARVGYINDELVLNPSNKELEESRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E S++ + D+ +I K+ Sbjct: 176 LVVAGTDNAVLMV---ESEADRLSEEQMLQAVVFGHDQQQVVINAIKE 220 >gi|260175214|ref|ZP_05761626.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. D2] gi|315923445|ref|ZP_07919685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2] gi|313697320|gb|EFS34155.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2] Length = 708 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + LN AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 GKITETIAEP 548 Score = 92.5 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57 GR I+L K A+GS +++ G+T LL T ++ VP ++ Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 A +G P G KRE GR R++ RALR + + ++ ++ Sbjct: 66 EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + ADG V + D L + + G ++ + + G +++ Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + + D+D T +I+ V+G E S+ + +A + I K Q + Sbjct: 167 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKVHCKAQME- 222 Query: 238 ISNEV 242 ++ EV Sbjct: 223 LTEEV 227 >gi|74146647|dbj|BAE41329.1| unnamed protein product [Mus musculus] Length = 257 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P + G++ Sbjct: 4 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 62 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116 + P + R G + + + I ++ + V+ L G ++ C Sbjct: 63 NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 118 Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165 D+ + DG A AL + + + + K + ++ + A S Sbjct: 119 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATS 178 Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + IVD E+ V + G + + + + ++ A Sbjct: 179 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 237 Query: 225 DRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 238 TRHKEVSKLLDEVIQS 253 >gi|149177150|ref|ZP_01855757.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM 8797] gi|148844042|gb|EDL58398.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM 8797] Length = 711 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR + +R+++ GS + G+T L T TL + + Sbjct: 315 RLDGRAPDVLRDVTCETGALPRVHGSAVFTRGETQSLATVTLGTSRDKQRVDGLFEEELQ 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + R++ V+ I + D Sbjct: 375 QFMLHYYFPSFSVGECRPIRGPGRREIGHGC----LAERSVLPVLPNEEDFPYTIRVISD 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++++G + A++ A +AL D L+ VA IS G++ Sbjct: 431 ILESNGSSSMASVCSATLALMDAGV-------------PLRQPVAGISIGLVTKGKEYKI 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ A L AK +L++ Sbjct: 478 LTDIIGDEDHFCDMDFKVAGTQKG-ITGIQLDLKNDGINEEIIKATLEQAKKARLELLRT 536 Query: 234 QKDVISNE 241 I Sbjct: 537 MLTAIRRP 544 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 28/229 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++SLT ++K A G+ LV++G+T + A + + + A G P Sbjct: 13 KLSLTTGQLAKQAAGAVLVQYGETVVFVAAATGPGRPGIDFFPLTVDYRERAAASGKFP- 71 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+ R +R + QI + Sbjct: 72 --GGFLKRE---GRPTTKEILTARLTDRPIRPLFPKGFHDELQIQSNVMSCDGINEPDVL 126 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 +I GA AL +G + A+ G + G IV + + + D Sbjct: 127 SINGASAALC-------------LSPVPFQGPIGAVRIGRIDGELIVFPN--HEQIAEGD 171 Query: 189 ANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ++ + ++ ++G + +D + LA +A + KLQ + Sbjct: 172 LDLIVAGTIESVLMIEGFGNQIP--EDEMLEAIMLAHTELAKICKLQLE 218 >gi|269137767|ref|YP_003294467.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda EIB202] gi|267983427|gb|ACY83256.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda EIB202] gi|304557824|gb|ADM40488.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda FL6-60] Length = 707 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPSQDAFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEQDNFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 75/234 (32%), Gaps = 28/234 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T E + + G P Sbjct: 16 VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERAYAAGRFP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR G R+I R +R + L Q++ + Sbjct: 75 --GGFFRRE---GRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTMDELKQSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 TD+ ++ +E S+D + D+ +I+ K ++ EV Sbjct: 177 LVVAGTDNAVLMV---ESEADLLSEDQMLGAVVFGHDQQQVVIENIK-ALAAEV 226 >gi|163796758|ref|ZP_02190716.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium BAL199] gi|159178012|gb|EDP62559.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium BAL199] Length = 684 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + GS L G+T L TL I + G Sbjct: 291 RIDGRDTKTVRPIVAEVGILPRTHGSALFTRGETQALVVTTLGTGQDEQIVDALDGEYRE 350 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA R ++ + + + Sbjct: 351 NFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRATRPLMPTKDAFPYTVRVVSE 406 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +A+ D + + + +G A+ + D+ Sbjct: 407 ITESNGSSSMATVCGTSLAMMDAGVPLPRPIAGIAMGLIKEGEQFAV---------LSDI 457 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD G I +Q + + +++ L A+D ++ Sbjct: 458 LGDEDHLGDMDFKVAGTDKG-ITALQMDIKITSITKEIMDVALGQARDGRLHILGEMAKA 516 Query: 238 ISN 240 ++N Sbjct: 517 LTN 519 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 80/222 (36%), Gaps = 34/222 (15%) Query: 22 KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77 + A+G+ + ++GDT +L T T + + + + + T G +P G KRE Sbjct: 3 RQADGAVVARYGDTVVLCTVVAAKTPRQGIDFFPLSVHYQEKTYSAGKIP---GGFFKRE 59 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTAAITGAWV 135 GR + R+I R +R + Q+I C V+ D A+ G Sbjct: 60 ---GRPTEKEVLTSRLIDRPIRPLFVKGFKNETQVI--CTVLAHDLENDPDVVAMVGTSA 114 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL G +A G G +++ + T D+D T Sbjct: 115 ALC-------------ISGVPFLGPIAGCRVGYTNGEYVLNPLMEDAKTSDLDLMVAGTQ 161 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233 G ++ ++E +++ + + I +I+L Sbjct: 162 EGVLMVESMASE---LTEEVMLGAVTFGHESFQPVIQAIIEL 200 >gi|123440817|ref|YP_001004808.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160083|ref|YP_004296660.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|187611341|sp|A1JIX3|PNP_YERE8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33332421|gb|AAQ11418.1| PNPase [Yersinia enterocolitica] gi|122087778|emb|CAL10564.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607357|emb|CBY28855.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica subsp. palearctica Y11] gi|325664313|gb|ADZ40957.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862022|emb|CBX72189.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica W22703] Length = 706 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S+D + Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 205 >gi|8928245|sp|O34275|PNP_YEREN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 706 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S+D + Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 205 >gi|238918428|ref|YP_002931942.1| polynucleotide phosphorylase/polyadenylase [Edwardsiella ictaluri 93-146] gi|259534121|sp|C5BFC1|PNP_EDWI9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|238867996|gb|ACR67707.1| polyribonucleotide nucleotidyltransferase [Edwardsiella ictaluri 93-146] Length = 707 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPSQDAFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEQDNFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 28/234 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T E + + G P Sbjct: 16 VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERAYAAGRFP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR G R+I R +R + L Q++ + Sbjct: 75 --GGFFRRE---GRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKQSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 TD+ ++ +E S+D + ++ ++ ++ EV Sbjct: 177 LVVAGTDNAVLMV---ESEADLLSEDQMLGAVVFGHEQ-QQIVIENIKALAAEV 226 >gi|139439612|ref|ZP_01773025.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC 25986] gi|133774953|gb|EBA38773.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC 25986] Length = 748 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE---EKVPM-WIRNTKHG 57 R+ GR +++R I + GS L + G T +L+ +L E + I T+ Sbjct: 319 RVDGRAADEIRPIMVKDNYLPLVHGSGLFQRGQTQVLSVLSLGMLNEGQRLDTIEPTEGK 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + + R+ G + RAL V+ I + + Sbjct: 379 RYMHHYNFPPFCTGETGRMGSPKRREIGHG----NLAERALLPVLPDENEFPYAIRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V++++G + A+ G+ +AL D +K V+ I+ G++ Sbjct: 435 VMESNGSSSMASTCGSTLALMD-------------GGVPIKRPVSGIAMGLIQEEGKTVV 481 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + D L AK+ A +++ Sbjct: 482 LSDIQGLEDFLGDMDFKVTGTTEG-ITALQMDNKATGLTFDILARALQQAKEGRAFILQK 540 Query: 234 QKDVISNE 241 DVI Sbjct: 541 MLDVIPEP 548 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 79/224 (35%), Gaps = 27/224 (12%) Query: 22 KYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 K A G+CLVK GDT +L + E K + G +P G +KRE Sbjct: 24 KQATGACLVKQGDTTMLDTVVVSKERKNYDFFPLTVDFNEKMYAAGRIP---GGYLKRE- 79 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 GR ++ RMI R +R I+ ++ V Sbjct: 80 --GRPSEKATLTARMIDRPIRPSFPEGFRNEVHIV-------------ATSLVADQVNPF 124 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDANFVMTDS 196 D + M +G +A + G + G IV+ Y E D+D + Sbjct: 125 DVINVMGASLAMTLGGVPFEGPLACVRIGRNVETGEFIVNPTYEERENSDLDLELGGSAD 184 Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 I V+ AE S+D A + ++ +A + Q + ++ Sbjct: 185 F-ISMVEAGAEE--ISEDDMLAAMKFGQEALAAFCQAQVEFVAE 225 >gi|327396265|dbj|BAK13687.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis AJ13355] Length = 715 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 321 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQNLDELMGERTD 380 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 381 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKAEDFPYTVRVVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 437 ITESNGSSSMASVCGASLALMDAGV-------------PIKASVAGIAMGLVKEDDKFVV 483 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 484 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 542 Query: 234 QKDVISNE 241 + IS Sbjct: 543 MEQAISTP 550 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 22 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKP---GQDFFPLTVNYQERTYAAGR 78 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 79 IPGSFFRRE---GRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 135 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E T +D Sbjct: 136 AMIGASAALALSGL-------------PFNGPIGAARVGYINDQYVLNPTADELKTSRLD 182 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T + ++ +E S++ + Sbjct: 183 LVVAGTQNAVLMV---ESEAEILSEEQMLGAV 211 >gi|256830187|ref|YP_003158915.1| polyribonucleotide nucleotidyltransferase [Desulfomicrobium baculatum DSM 4028] gi|256579363|gb|ACU90499.1| Polyribonucleotide nucleotidyltransferase [Desulfomicrobium baculatum DSM 4028] Length = 736 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 90/246 (36%), Gaps = 27/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R + + GS + G+T L T TL +E+ + Sbjct: 318 IRIDGRDLTTVRPLIMEVGFLPRTHGSAIFTRGETKALCTCTLGSTRDEQRIETLAGDTS 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G A R+ G + RAL V+ I + Sbjct: 378 RRFLMHYNFPPYSVGEARMLRAPGRREIGHG----ALSERALNPVLPEPDAFPFTIRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D+++++G + A++ G +AL D +K +A I+ G++ Sbjct: 434 DIMESNGSSSMASVCGGTLALMDAGV-------------PIKTPIAGIAMGLIKEGDEYL 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D + G + +Q + A + L+ AKD ++ Sbjct: 481 VLTDILGDEDHLGDMDFKVAGSRDG-VTSIQMDIKIAGIPAEVMQKALHQAKDARVHILD 539 Query: 233 LQKDVI 238 Q + + Sbjct: 540 -QMEAL 544 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 36/239 (15%) Query: 13 EISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-GMLPRST 70 EI + A G+ V++GDT +L TAT R +T Y ML + Sbjct: 17 EIIIEHGKLALQASGAVTVQWGDTVVLVTAT----HQALDRVVDFLPLTCNYQEMLYSAG 72 Query: 71 ---GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 GN +RE GR R++ R +R + + +I + VI +D R+ Sbjct: 73 RVPGNYFRREV--GRPSEHETLTSRLMDRPIRPLFPKG--CTNEIQVIATVISSD-KERS 127 Query: 128 A---AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A A+ GA ALH G +AAI G G +++ E Sbjct: 128 ADILAMLGASTALH-------------ISEIPFAGPIAAIRVGYRDGKFLLNPTATE--L 172 Query: 185 IDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N ++ S +V V+G A+ S+D + ++ L+ Q++ + E+ Sbjct: 173 ATSQLNMILAGSRDAVVMVEGGAQ--FLSEDIMTEAVAWGHAQLGPLLDAQEE-LRKEL 228 >gi|86148613|ref|ZP_01066896.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp. MED222] gi|85833604|gb|EAQ51779.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp. MED222] Length = 706 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R +++V+ + + + Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTSVFVSVVAKKEA---VAGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + + Q+I I D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + AL G + A G + G +++ E +D Sbjct: 131 TMIATSAALAISGA-------------PFNGPIGAARVGHIDGELVLNPSNTELENSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+ G ++ V+ +E S++ + + D+ +IK + Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLSEEEMLSAVVYGHDQQQVVIKAINE 222 >gi|299753339|ref|XP_001833208.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130] gi|298410256|gb|EAU88481.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130] Length = 259 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 78/244 (31%), Gaps = 26/244 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R R +R I L + + A GS ++ G T + + + G + Sbjct: 38 RQD-RLPLAIRPIFLQPGLIEQANGSAYIETGKTKIACAIYGPRQSKN-VAFHDKGRLNV 95 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E P S KR A RS I I +A+ V L L + + V++ Sbjct: 96 ELKFAPFSCP---KRRAPIRDAEDRS--IAMAIHQAILPSVRLETLPKSTVDVFITVLEE 150 Query: 122 DG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 DG G A A AL D + G VA+ S ++ +D Sbjct: 151 DGIEGCVAAGSVAASAALVDAGI-------------EVFGIVASTSAAVIGEEIWLDPSE 197 Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 E S M I + + E A D + + + + D+ + + + Sbjct: 198 QESSQSKGTFVLATMPALNTITSIWQNGEMAP---DQVLKAMEICEKQCVDIHTVVAERL 254 Query: 239 SNEV 242 + Sbjct: 255 RETL 258 >gi|238787597|ref|ZP_04631395.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii ATCC 33641] gi|238724384|gb|EEQ16026.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii ATCC 33641] Length = 706 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVMAVMPSPSEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T + ++ +E S+D + Sbjct: 177 LVVAGTAAAVLMV---ESEADILSEDQMLGAV 205 >gi|311266149|ref|XP_003130982.1| PREDICTED: exosome complex exonuclease RRP43-like [Sus scrofa] Length = 276 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 87/257 (33%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P G+I Sbjct: 23 RPDGRELGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIKAEFGAPP-TDAPDKGYIVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 + P + SG G +Q + I + ++ L G ++ Sbjct: 82 NVDLSPLCSW-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A AL + + + + K + ++ H A Sbjct: 137 CDLICLNHDGNILDACTFALLAALKNVQLPEVNINEETALAEVNLKKKSYLNIRTHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ VM + G + + + + ++ A Sbjct: 197 SFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL +V + Sbjct: 256 VTRHKEVKKLMDEVFKS 272 >gi|218710441|ref|YP_002418062.1| polynucleotide phosphorylase/polyadenylase [Vibrio splendidus LGP32] gi|254782746|sp|B7VJH3|PNP_VIBSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218323460|emb|CAV19637.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus LGP32] Length = 706 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R +++V+ + + + Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTSVFVSVVAKKEA---VAGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + + Q+I I D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + AL G + A G + G +++ E +D Sbjct: 131 TMIATSAALAISGA-------------PFNGPIGAARVGHIDGELVLNPSNTELENSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+ G ++ V+ +E S++ + + D+ +IK + Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLSEEEMLSAVVYGHDQQQVVIKAINE 222 >gi|90412489|ref|ZP_01220492.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium profundum 3TCK] gi|90326526|gb|EAS42932.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium profundum 3TCK] Length = 707 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 96/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+++ +R + + V GS L G+T L TATL + I ++ G Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVEEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD G I +Q + +++ LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSV 535 Query: 234 QKDVISNE 241 D I + Sbjct: 536 MDDAIGSH 543 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT + + + E + + T G +P Sbjct: 15 VTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 74 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVNPDVNPDMI 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + AL G + A G + +++ E +D Sbjct: 129 TMIATSAALA-------------ISGLPFNGPIGAARVGFVNDQFVLNPSNTELEESRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T ++ +E S++ + D Q+ V+ N + Sbjct: 176 LVVSGTKDAVLMV---ESEADRLSEETMLQAVVYGHD--------QQQVVINAI 218 >gi|47210411|emb|CAF91679.1| unnamed protein product [Tetraodon nigroviridis] Length = 276 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 82/242 (33%), Gaps = 29/242 (11%) Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWITAEYG 64 R++ +R + + + A+GS ++ G T LL + + + G +TA+ Sbjct: 40 REQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERKDETDMRCGRLTADVR 99 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 P S R + G Q + M+ +L+ V L QI + V++ G Sbjct: 100 FAPFSCPERGS--WIQGSQDR---DFSSMLLESLQPAVCLHRYPRSQIEVHLVVLENGGS 154 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+T A VAL D M D V S + D Y E+S Sbjct: 155 VLAHAVTCASVALADAGIQMYDL-------------VLGCSLRQDGASFVADPTYAEESG 201 Query: 185 IDVD-------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 + I ++ E ++D A + + L + + V Sbjct: 202 RAGPGGPRGGLTVAFLPSLNQISGLRSDGE---MAEDTLRAGVRTCIEGCYKLYPVVRQV 258 Query: 238 IS 239 +S Sbjct: 259 LS 260 >gi|37589850|gb|AAH59089.1| Exosome component 8 [Mus musculus] Length = 276 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P + G++ Sbjct: 23 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116 + P + R G + + + I ++ + V+ L G ++ C Sbjct: 82 NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 137 Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165 D+ + DG A AL + + + + K + ++ + A S Sbjct: 138 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVAAS 197 Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + IVD E+ V + G + + + + ++ A Sbjct: 198 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 256 Query: 225 DRIADLIKLQKDVISN 240 R ++ KL +VI + Sbjct: 257 TRHKEVSKLLDEVIQS 272 >gi|37528344|ref|NP_931689.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418115|sp|Q7MYZ0|PNP_PHOLL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|36787782|emb|CAE16897.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (PNPase) (CAP87K) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 709 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + I + G T Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVAAVMPKANEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSCEG-ISALQMDIKIEGITREIMQIALNQAKGARLHILSV 536 Query: 234 QKDVISNE 241 + I++ Sbjct: 537 MEQAINSP 544 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 +++ + + A + +V DT + T ++KV +T Y + G Sbjct: 16 VAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKV---KEGQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR G + R+I R LR + L QI+ + Sbjct: 73 VPGSFFRRE---GRPGEGETLVARLIDRPLRPLFPDGFLNEVQIVATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA L G + A G + +++ E +D Sbjct: 130 AMIGASAVLALSGI-------------PFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E +++ + Sbjct: 177 LVVSGT-AGAVLMVE--SEADILTEEQMLGAV 205 >gi|84387281|ref|ZP_00990302.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01] gi|84377928|gb|EAP94790.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01] Length = 706 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R +++V+ + + + Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTSVFVSVVAKKEA---VAGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + + Q+I I D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + AL G + A G + G +++ E +D Sbjct: 131 TMIATSAALAISGA-------------PFNGPIGAARVGHIDGELVLNPSNTELENSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+ G ++ V+ +E S++ + + D+ +IK + Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLSEEEMLSAVVYGHDQQQVVIKAINE 222 >gi|253682340|ref|ZP_04863137.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D str. 1873] gi|253562052|gb|EES91504.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D str. 1873] Length = 706 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 16/236 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +++R +S + GS L G T +++ ATL E +V I Sbjct: 312 RPDGRSFDEIRPLSAETSLLPRTHGSGLFSRGLTQVMSVATLGSVSEGQVLDGIDEETSK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G + +A+ ++ I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHG----ALAEKAIEPLIPSEQEFPYAIRVVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + V ++ + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSEDLS-------KEEILTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ED D+D T+ G I +Q + S D + A+ ++K+ Sbjct: 481 QGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIEGLSNDCIKKAIGDARTARLTILKV 535 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 78/234 (33%), Gaps = 27/234 (11%) Query: 12 REISLTRRVSKYAEGSCL-VKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ L + +GDT +L +E + + + ++ G + Sbjct: 12 RKLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPAPKEGIDFFPLSIEYQERLYAVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR R+ R I R LR + Q++ + D Sbjct: 72 P---GGFIKRE---GRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPN 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +AL S V +S G++ G IV+ + Sbjct: 126 ILAMNGASLALC-------------LSSIPFTKPVGTVSVGLIDGEFIVNPTSKQREESI 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T ++ ++ E +D + + + + Q+ V+ Sbjct: 173 LDLTVCATKE-RVMMIEAGGEEIP--EDVMYDAIMFGFEECKKIADFQEKVMEQ 223 >gi|291616014|ref|YP_003518756.1| Pnp [Pantoea ananatis LMG 20103] gi|291151044|gb|ADD75628.1| Pnp [Pantoea ananatis LMG 20103] Length = 757 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 363 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQNLDELMGERTD 422 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 423 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKAEDFPYTVRVVSE 478 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 479 ITESNGSSSMASVCGASLALMDAGV-------------PIKASVAGIAMGLVKEDDKFVV 525 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 526 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 584 Query: 234 QKDVISNE 241 + IS Sbjct: 585 MEQAISTP 592 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 64 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKP---GQDFFPLTVNYQERTYAAGR 120 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 121 IPGSFFRRE---GRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 177 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E T +D Sbjct: 178 AMIGASAALALSGL-------------PFNGPIGAARVGYINDQYVLNPTADELKTSRLD 224 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T + ++ +E S++ + Sbjct: 225 LVVAGTQNAVLMV---ESEAEILSEEQMLGAV 253 >gi|91792379|ref|YP_562030.1| polynucleotide phosphorylase/polyadenylase [Shewanella denitrificans OS217] gi|91714381|gb|ABE54307.1| Polyribonucleotide nucleotidyltransferase [Shewanella denitrificans OS217] Length = 701 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 90/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +++ V GS L G+T L T TL + I + Sbjct: 317 RIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGERTN 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + I + + Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGMNAVMPTAEEFPYSIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 538 Query: 234 QKDVISNE 241 I Sbjct: 539 MDQAIGTH 546 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T ++ + + T G +P Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 77 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ D Sbjct: 132 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYLLNPTV--DQLATSS 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N V+ + V + S E +++ + D Q+ V+ + + Sbjct: 177 LNLVVAGTKAAVLMVES-EAKALAEEIMLGAVTYGHD--------QQQVVVDAI 221 >gi|316971903|gb|EFV55625.1| polyribonucleotide nucleotidyltransferase [Trichinella spiralis] Length = 1172 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 32/217 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-------- 53 R GR +++R I + + GS L + G T ++ + T + + + + Sbjct: 728 RRDGRTLDELRPIDCSVDLYPSLHGSALFQRGQTQVMCSLTFDSRQAAFRGDVFSLLNSG 787 Query: 54 --TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 TK Y +T + R+ G + +ALR VV Sbjct: 788 GITKEKKFMFHYNFASFATNELSSARGIGRRELGHG----ALAEKALRPVVPSDF--PFT 841 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 I + DV++++G + A++ +AL D K V+ ++ G++ Sbjct: 842 IRLAADVLESNGSSSMASVCAGSLALMDAGV-------------PTKSSVSGVAIGLMSK 888 Query: 172 Y---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205 + D+ ED D+D T +G + +Q Sbjct: 889 QDYRLLTDIAGIEDFFGDMDFKIAFTSNGEVTAIQLD 925 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 23/230 (10%) Query: 13 EISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEK--VPMWIRNTKHGWITAEYGMLPRS 69 + L A+GS + K G T ++ T + + V + +T +Y + Sbjct: 414 PMILETGQLARLADGSAVAKMGATAVMATVVAKSRSAVQPMMFMP----LTVDYRSRAAA 469 Query: 70 TGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G R+ + G EI RMI R+LR Q+ ++AD Sbjct: 470 VG-RIPTNFLRREIGASDSEILTARMIDRSLRPAFGRDCYVDCQVSCSLLSLEADA---- 524 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 TGA D L + + V G VA + P+++ + + Sbjct: 525 ---TGA-----DVLAVNAASAALACSNVVWNGPVACARVCWVDSRPVLNPSRQQLEMSTL 576 Query: 188 DANFVMTDSGHIVEVQG-SAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + + + IV V+ + S D +A +LA D + K Sbjct: 577 NLVLSVGEHRRIVMVEAGGGSSGSCSLDQLYACCDLAVDSAQRTLDAIKQ 626 >gi|331212367|ref|XP_003307453.1| exosome complex exonuclease RRP41 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309297856|gb|EFP74447.1| exosome complex exonuclease RRP41 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 308 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 92/264 (34%), Gaps = 47/264 (17%) Query: 1 MRLSGRQENQMREISLTRRVSKYA----EGSCLVKFGDTHLLTTATLEEK-------VPM 49 +RL R+ ++R S+ + + V+ G T L+ + V Sbjct: 28 LRLDNRRPYELR--SIDFNILPNPPVGCDSVARVEHGLTKLIGFVSGPRDSVESNRTVAT 85 Query: 50 WIRNT---------------KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI 94 + N ++G I+ P S+ +R K GR + ++ + I Sbjct: 86 TLGNPTSNSASSNLNNNNNNQNGSISVHISTTPFSSIDRKK----IGRSDKKFADLAQAI 141 Query: 95 GRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154 VV L I I V+Q DG AAI +AL + D Sbjct: 142 QNTFEPVVMLHLYPRSTIDIYVQVLQQDGALLQAAINVTTLALIGAGVSISDY------- 194 Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 VL V A+S P++DL E + + V+ + + +Q + Sbjct: 195 -VLSVSVGALSTP---SCPLLDLTNSEQTDLPNLTIAVLPRTQKLTLLQLDTRINILT-- 248 Query: 215 HFFAMLNLAKDRIADL-IKLQKDV 237 F ++L + + L +++ ++V Sbjct: 249 -FESLLEIGLEACLVLQLEMDREV 271 >gi|307249785|ref|ZP_07531763.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858200|gb|EFM90278.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 715 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISHLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E S++ + + + +I+ K+ + Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224 >gi|34540549|ref|NP_905028.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas gingivalis W83] gi|81417555|sp|Q7MW79|PNP_PORGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|34396862|gb|AAQ65927.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis W83] Length = 743 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 24/244 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 RL GR+ ++R I + GS + G+T LTT TL K + + + Sbjct: 318 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 377 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ ++ + + D Sbjct: 378 RFLLHYNFPPFSTGEARPQRGVGRREIGHG----NLAHRALKRMIPTD--YPYVVRVISD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 +++++G + A + +AL D + + + IS Y I+ D Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMG--------LISENQGKNYAILSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232 + ED D+D T G I Q + S + L AK + +++ Sbjct: 484 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIME 542 Query: 233 LQKD 236 Q + Sbjct: 543 AQPE 546 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 21/227 (9%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69 R I + K A+G+ V G+T LL T ++ P +Y + R Sbjct: 15 RSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGRF 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +RE G+ R++ RALR + + ++ ++ + ADG Sbjct: 75 PGGFTRRE---GKASDYEILTCRLVDRALRPLFPDN--YHAEVFVNVILFSADG------ 123 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + D L + + G ++ + + G IV+ + + D+D Sbjct: 124 -----EDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDL 178 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V +I+ V+G E + + +A + I K Q + Sbjct: 179 -MVGATMDNIMMVEG--EMDEVQESEMLEGIRVAHEAIKVQCKAQLE 222 >gi|330830884|ref|YP_004393836.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565] gi|328806020|gb|AEB51219.1| Polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565] Length = 715 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 93/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R +S+ + A GS L G+T + ATL + + + Sbjct: 314 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELTGNRAD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ +A + + + Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHG----RLAKRGVAAVMPSAAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEEEGFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A+ ++K+ Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEG-VTALQMDIKIEGITKEIMEIALKQARGARLHILKV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MDEAI 540 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + T + + + T G +P Sbjct: 15 VTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R +R + L Q++ + Sbjct: 74 --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E D+D Sbjct: 129 AMIGASAALAISGI-------------PFGGPIGAARVGYMNGQYVLNPTTTELPQSDLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + ++ +E A S++ + +++ +I + Sbjct: 176 LVVAGTANAVLMV---ESEAAILSEEVMLGAVVYGHEQMQTVINAINE 220 >gi|187611313|sp|Q12QG9|PNP_SHEDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 698 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 90/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +++ V GS L G+T L T TL + I + Sbjct: 314 RIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + I + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGMNAVMPTAEEFPYSIRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I Sbjct: 536 MDQAIGTH 543 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T ++ + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 74 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ D Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYLLNPTV--DQLATSS 173 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N V+ + V + S E +++ + D Q+ V+ + + Sbjct: 174 LNLVVAGTKAAVLMVES-EAKALAEEIMLGAVTYGHD--------QQQVVVDAI 218 >gi|254510470|ref|ZP_05122537.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae bacterium KLH11] gi|221534181|gb|EEE37169.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae bacterium KLH11] Length = 716 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 19/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + GS L G+T L TL + HG + Sbjct: 318 RIDGRSTTDIRSIVAETSMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + I I + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGGPGRREIGHGKLAWRALQAVLPAATDFPYTIRIVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 + +++G + A++ G +++ D ++ + +L+ Y I+ D Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDD---------GNYAILSD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 485 ILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMGK 543 Query: 237 VISN 240 +S Sbjct: 544 ALSE 547 Score = 71.7 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFARAQKPGQDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPIRPLFVDGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL +G +A G G +++ D D Sbjct: 128 IVAMIAASAALTISGA-------------PFRGPIAGARVGFEDGEYVLNPTV--DDMQD 172 Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + N V ++ V+ +E S+ + A ++I +I L Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVTFAHEQIQPVIDL 224 >gi|322378832|ref|ZP_08053258.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1] gi|322380127|ref|ZP_08054375.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5] gi|321147432|gb|EFX42084.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5] gi|321148756|gb|EFX43230.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1] Length = 672 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 87/241 (36%), Gaps = 23/241 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM------WIRNTK 55 R GR Q+R I + + S L + G T L TL + + + Sbjct: 302 RPDGRTLTQIRPIYIETNLLPACHSSVLFERGHTQALVACTLGSENDAKQGLGTYEKTPS 361 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P G + A+S R+ G + +AL S + I + Sbjct: 362 KERFMLHYNFPPFCVGEAMPMGALSRRELGHGH----LAQKALESTLPEQ---HPVIRLV 414 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A++ +AL + D + +++G AI + Sbjct: 415 SEILESNGSSSMASVCAGSLALKAAGIDIRDLVAGVAMGLMVEGDKYAI---------LS 465 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G ++ +Q + + + +L AK +++ + Sbjct: 466 DISALEDMQGDMDFKIAGTHQG-VLAMQMDTKLSGICLEWLGEILKQAKQARTVILERMQ 524 Query: 236 D 236 + Sbjct: 525 E 525 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 38/216 (17%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV----K 75 V+K A+ + L ++ T +L + ++ + ++ +Y + G + Sbjct: 16 VAKTADSALLYRYKGTVILASVVVDRQHT----EADFLPLSVQYAQRAYAVGRFPSNFLR 71 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE G+ R+I R+LR + QI + + A+ A Sbjct: 72 RE---GKMDNFETLTSRLIDRSLRPLFPKGYTYPTQITLLVLSYDYQSDLQVCALNAASN 128 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL+ ++ + +L G D+ +D V Sbjct: 129 ALYLANIGVDTTIHAMRL----------------NGT---------DTAKSLDLLVVGNA 163 Query: 196 SGHI-VEVQ-GSAERATFSQDHFFAMLNLAKDRIAD 229 + +E+Q + + + ++ A +I + Sbjct: 164 EAILMIEMQIKDSSQHALEESKLLDLIRHAHTQIQE 199 >gi|291166373|gb|EFE28419.1| polyribonucleotide nucleotidyltransferase [Filifactor alocis ATCC 35896] Length = 726 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 88/245 (35%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R R +++R IS GS + G T +++ A E + + Sbjct: 311 IRPDNRSMDEIRPISCEVGTLPRTHGSAIFTRGQTQVMSVTTLGALGEMQTLDGLDENIE 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RA+ ++ + I + Sbjct: 371 KRYMHHYNFPAYSVGEARPSRGPGRREIGHG----ALAERAILPMLPSKEEFAYAIRVVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ ++L D M+ + + + AI + D Sbjct: 427 EVMSSNGSTSQASVCGSTLSLLDAGVPMKRMVAGIAMGLIKEDEHLAI---------LSD 477 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I +Q + + ++ L A+ ++ ++ Sbjct: 478 IQGMEDFLGDMDFKVAGTEEG-ITAIQMDIKISGIDEEILTKALEQARQGRLFILNKMRE 536 Query: 237 VISNE 241 VIS+ Sbjct: 537 VISSP 541 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 84/225 (37%), Gaps = 27/225 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + V++ A G+CLV GDT +L TAT E + + + G + Sbjct: 12 RQLKIEIGKVAELANGACLVSCGDTVVLVTATNSALPREGIDFFPLSVDFEERLYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + Q++ ++ D Sbjct: 72 P---GGFIKRE---GRPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVEPD---- 121 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D L + S G +++ G++ G I++ D + + D Sbjct: 122 ---------VTPDVLAMIGSSIALSISSIPFNGPTGSVAVGLIDGQLILNPDVDQRAASD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + T I+ V+ A ++ + A + I ++ Sbjct: 173 LHLTVSGTKDA-IMMVEAGANE--VTERTMLEAILYAHEEIKKIV 214 >gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM 1131] gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM 1131] Length = 707 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + + G T Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 375 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDHADFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGEDFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITREIMQVALNQAKGARLHILGT 536 Query: 234 QKDVISNE 241 + I+ Sbjct: 537 MEQAINGP 544 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 +S+ +++ A + +V DT + TA ++E + + T G +P Sbjct: 16 VSIETGMIARQASAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR G I R+I R LR + QII + Sbjct: 75 --GSFFRRE---GRPGEGETLIARLIDRPLRPLFPEGFYNEIQIIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA L G + A G + +++ E +D Sbjct: 130 AMIGASAVLA-------------LSGVPFNGPIGAARVGFINDQYVLNPTADELKNSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 TD+ ++ +E S++ + D+ I ++ +L K+ Sbjct: 177 LVVAGTDNAVLMV---ESEADLLSEEQMLGAVVFGHDQQQVVIQNINELVKEA 226 >gi|303233686|ref|ZP_07320340.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna BVS033A4] gi|302495120|gb|EFL54872.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna BVS033A4] Length = 714 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R R+ +Q+REI+ + GS L K G T +L+ TL + + + Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQED 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G+ + R+ G + RAL V+ I + Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 +V+ ++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGV-------------PIKEPVAGIAMGLIKEDDNVV 474 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 I+ D+ ED D+D T G I +Q + S++ L A+ ++ Sbjct: 475 ILSDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILS 533 Query: 233 LQKDVISNE 241 L + IS Sbjct: 534 LMNECISEP 542 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 +I +T V++ A G+CL++ G+T LL TA E V + G +P Sbjct: 13 KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R LR + Q+I + D Sbjct: 73 ---GGFIKRE---GRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ G+ +AL G +++ GM+ G I++ + D+ Sbjct: 127 LAMIGSSIALS-------------ISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKD 236 + T I+ V+ A ++ + A + I + + +QK+ Sbjct: 174 ELTVAGTKDA-IMMVE--AGCNNITEQQVLKAILRAHEEIKKICEFIESIQKE 223 >gi|303251556|ref|ZP_07337730.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252131|ref|ZP_07534030.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649554|gb|EFL79736.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860431|gb|EFM92445.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 715 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T+ ++ +E S++ + + + +I+ K+ + Sbjct: 176 LVVAGTNKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224 >gi|270294853|ref|ZP_06201054.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20] gi|270274100|gb|EFA19961.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20] Length = 714 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T L+T TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + ++ + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPVN--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEDKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 GKITECIAEP 548 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ R G KRE GR R++ RALR + + + ++ + Sbjct: 66 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V + D L + + G ++ + + G +++ + Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFE 169 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ + A + I K Q + ++ Sbjct: 170 QLEQADMDLMVGATYE-NIMMVEG--EMDEVSEQDLLEAMKAAHEAIKIQCKAQME-LAE 225 Query: 241 EV 242 EV Sbjct: 226 EV 227 >gi|222623250|gb|EEE57382.1| hypothetical protein OsJ_07542 [Oryza sativa Japonica Group] Length = 941 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 57/294 (19%), Positives = 97/294 (32%), Gaps = 68/294 (23%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GRQ +++R + GS L GDT +L T TL ++ G Sbjct: 294 LRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 353 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRS---------------QE-----------I 90 Y P S KR ++ R+ G E Sbjct: 354 KRFMLHYSFPPFSINEVAKRGGLNRREVGHDGLHGPIRLGDELRVWIEHKALDPTGFLLT 413 Query: 91 QRMI-------------GRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 R++ +AL +V+ + ++ +V+ +DG T A++ G +AL Sbjct: 414 NRLVFWERQWLSAGTLAEKALLAVLPPEGEFPYTVRVNSEVMASDGSTSMASVCGGSMAL 473 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----------YPIVDLDYGEDSTID 186 D ++ HVA +S G++ + D+ ED D Sbjct: 474 MDAGI-------------PVREHVAGVSVGLVSEVDQTTGDISSYRILTDILGLEDHLGD 520 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T G I +Q + A D L A+ ++ IS+ Sbjct: 521 MDFKIAGTRRG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQEISS 573 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 74/223 (33%), Gaps = 38/223 (17%) Query: 22 KYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRV 74 ++A GS ++ DTH+L A E V ++ +T +Y + G + Sbjct: 3 RFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLP------LTVDYQEKQYAQGVIPTTYM 56 Query: 75 KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITG 132 +RE G R R+I R +R + QI+++ VI +DG A Sbjct: 57 RRE---GAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVN--VISSDGKQDPDVMAANA 111 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 + AL G + I G + G +++ E D N V Sbjct: 112 SSAAL-------------MLSDIPWNGPIGVIRVGRIDGNFVLNPTVDE--LGLSDLNLV 156 Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + + A ++ A + LA I Q Sbjct: 157 YACSRDKTLMIDVQARE--ITERDLQAGMKLAHAEAVKCINPQ 197 >gi|212692847|ref|ZP_03300975.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855] gi|212664636|gb|EEB25208.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855] Length = 728 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 336 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 395 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 396 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPTG--YPYTVRVVSD 449 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 450 IMESNGSSSMATVCAGTLALMDAGVAM-------------KKPVSGIAMGLIKNAGEEKY 496 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 497 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHIL 555 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 556 NKLTECIAEP 565 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 29 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 82 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ RALR + + + ++ + Sbjct: 83 EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIVLFS 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG + + D L + + G ++ + + G +++ + Sbjct: 138 ADG-----------IDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFE 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ A + A + I K Q +++ Sbjct: 187 QLGKADMDLMVAATYD-NIMMVEG--EMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEE 243 >gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor] gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor] Length = 239 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 84/254 (33%), Gaps = 39/254 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R S T A GS GDT +L + N + I Sbjct: 6 RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + +G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 66 VWK-------------PKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 112 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG AI + AL M+ + VA M G I+D E Sbjct: 113 DGSLLPCAINASCAALAFAGIPMKHLA------------VAICCGVMDNGAVILDTSTAE 160 Query: 182 DSTIDVDANFVMTDSGHIVE----VQGSAE----------RATFSQDHFFAMLNLAKDRI 227 + A+ V +S V+ +Q E T S+D++F + Sbjct: 161 EQQAKSFAHLVFPNSRKSVDSKDPMQKDEESERGLISCITHGTMSEDNYFNCIERGIAAS 220 Query: 228 ADLIKLQKDVISNE 241 + + + + E Sbjct: 221 SKISDFMRKTLQKE 234 >gi|210632893|ref|ZP_03297592.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279] gi|210159361|gb|EEA90332.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279] Length = 743 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 38/251 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR N++R I + GS L + G T +L+ +L + N T Sbjct: 319 RVDGRAANEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLG------MLNEGQRLDTI 372 Query: 62 E----------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 E Y P TG + + R+ G + RAL V+ Sbjct: 373 EPVEGKRYMHHYNFPPYCTGETGRMGSPKRREIGHG----NLAERALIPVLPDENEFPYA 428 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 I + +V++++G + A+ G+ +AL D +K V+ I+ G++ Sbjct: 429 IRVVSEVMESNGSSSMASTCGSCLALMD-------------GGVPIKRPVSGIAMGLIQE 475 Query: 172 Y----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + D+ ED D+D T+ G I +Q + + D L AK+ Sbjct: 476 EGKTVVLSDIQGLEDFLGDMDFKVTGTERG-ITALQMDNKATGLTFDILRTALEQAKEGR 534 Query: 228 ADLIKLQKDVI 238 A ++ +V+ Sbjct: 535 AFILDKMLEVV 545 Score = 79.4 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 79/224 (35%), Gaps = 27/224 (12%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 K A G+ LVK GD+ +LTT + ++ + G +P G +KRE Sbjct: 24 KQATGAALVKQGDSTVLTTVVVSKERKNYDFFPLTVDFNEKMYAAGRIP---GGYLKRE- 79 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 GR ++ RMI R +R Q++ V + GA +A+ Sbjct: 80 --GRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNPVDVICVMGASLAM- 136 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDANFVMTDS 196 +G +A + G G IV+ Y E D+D T Sbjct: 137 ------------TLGGVPFEGPLACVRIGRDKETGEFIVNPTYEERDASDLDLELAGTRD 184 Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 I V+ AE S++ A + ++ I Q + ++ Sbjct: 185 F-ISMVEAGAEE--VSEEDMLAAMQFGQEAIGAFCDAQLEFVAE 225 >gi|297588437|ref|ZP_06947080.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC 53516] gi|297573810|gb|EFH92531.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC 53516] Length = 714 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R R+ +Q+REI+ + GS L K G T +L+ TL + + + Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQED 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G+ + R+ G + RAL V+ I + Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 +V+ ++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGV-------------PIKEPVAGIAMGLIKKDDNVV 474 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 I+ D+ ED D+D T G I +Q + S++ L A+ ++ Sbjct: 475 ILSDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILS 533 Query: 233 LQKDVISNE 241 L + IS Sbjct: 534 LMNECISEP 542 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 +I +T V++ A G+CL++ G+T LL TA E V + G +P Sbjct: 13 KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R LR + Q+I + D Sbjct: 73 ---GGFIKRE---GRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ G+ +AL G +++ GM+ G I++ + D+ Sbjct: 127 LAMIGSSIALS-------------ISDIPFLGPTGSVAVGMIDGEFIINPTQEQRDKSDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKD 236 + T I+ V+ A ++ + A + I + + +QK+ Sbjct: 174 ELTVAGTKDA-IMMVE--AGCNNITEQQVLKAILRAHEEIKKICEFIESIQKE 223 >gi|259417548|ref|ZP_05741467.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp. TrichCH4B] gi|259346454|gb|EEW58268.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp. TrichCH4B] Length = 712 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 17/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R I + GS L G+T L TL + HG + Sbjct: 318 RIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + VL+ S G+ + D+ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLED---DGSYGI-----LTDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T++G I +Q + A + + L AK Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMKNALAQAKAG 533 Score = 69.0 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L V++ A+G+ + G+T ++ T + +T Y + Sbjct: 16 LTLETGKVARQADGTVIATLGETSVMANVTYAREQKP---GQDFFPLTVHYQEKYYAAGK 72 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 73 IPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G +A G G I++ D D Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAGARVGYEDGEYILNPTV--DDMQD 172 Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + N V ++ V+ +E +++ + A ++I +I L Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELTEEEMLGAVTFAHEQIQPVIDL 224 >gi|118474584|ref|YP_892413.1| polynucleotide phosphorylase/polyadenylase [Campylobacter fetus subsp. fetus 82-40] gi|187610245|sp|A0RQD0|PNP_CAMFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118413810|gb|ABK82230.1| polyribonucleotide nucleotidyltransferase [Campylobacter fetus subsp. fetus 82-40] Length = 728 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 22/242 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55 R GR +R IS+ + A GSCL G T L TL + +N Sbjct: 344 RADGRGLKDVRPISIETNILPNAHGSCLFTRGQTQALVVTTLGTDNDAQMSEYLTEKNAV 403 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G +A R+ G + RAL +DL++ + + Sbjct: 404 ADKFMFNYNFPGFSVGEASPLKAPGRRELGHG----NLAKRALYPSIDLNS--PYSLRVV 457 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A++ G ++L + V +G A+ + Sbjct: 458 SEILESNGSSSMASVCGGSLSLRAAGVETIKLVAGVAMGLVFEGDEHAV---------LT 508 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D + G I +Q + S D L AK+ ++ L Sbjct: 509 DIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGISLDVLKEALYQAKEARDHILNLMV 567 Query: 236 DV 237 Sbjct: 568 KA 569 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 78/245 (31%), Gaps = 61/245 (24%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72 V+K A G+ L++ +T +L E+ +T +Y G +P G Sbjct: 19 VAKQAAGAVLMRVKNTVVLAAVAREDAQ----VEEDFLPLTVQYIEKQYAAGRIP---GG 71 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 VKRE + G R+I R+LR + QI++ + + ++ Sbjct: 72 YVKRET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSSDPEVDLQVVSLNA 128 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 A VAL+ + V + G + G +++ E +D +V Sbjct: 129 ASVALY-------------LSDIPVNSPVCGVRVGHINGKFVINPSNSELKNSALDL-YV 174 Query: 193 MTDSGHIVEVQG------------------------------SAERATFSQDHFFAMLNL 222 ++ ++ + FS+D + L Sbjct: 175 AGVKDELLMIEMRSLPNEQNEIVPVIAIDPMMDPSLNEGFVSRQKMNEFSEDLMIDAIKL 234 Query: 223 AKDRI 227 A + I Sbjct: 235 ATEAI 239 >gi|169824458|ref|YP_001692069.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC 29328] gi|226702653|sp|B0S1D9|PNP_FINM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167831263|dbj|BAG08179.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC 29328] Length = 714 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +R R+ +Q+REI+ + GS L K G T +L+ TL + + + Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQED 371 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G+ + R+ G + RAL V+ I + Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 +V+ ++G + A++ G+ ++L D +K VA I+ G++ Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGV-------------PIKEPVAGIAMGLIKEDDNVV 474 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 I+ D+ ED D+D T G I +Q + S++ L A+ ++ Sbjct: 475 ILSDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILS 533 Query: 233 LQKDVISNE 241 L + IS Sbjct: 534 LMNECISEP 542 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 +I +T V++ A G+CL++ G+T LL TA E V + G +P Sbjct: 13 KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR ++ R+I R LR + Q+I + D Sbjct: 73 ---GGFIKRE---GRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ G+ +AL G +++ GM+ G I++ + D+ Sbjct: 127 LAMIGSSIALS-------------ISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKD 236 + T I+ V+ A ++ + A + I + + +QK+ Sbjct: 174 ELTVAGTKDA-IMMVE--AGCNNITEQQVLKAILRAHEEIKKICEFIESIQKE 223 >gi|49475022|ref|YP_033063.1| polynucleotide phosphorylase/polyadenylase [Bartonella henselae str. Houston-1] gi|81648398|sp|Q6G5F8|PNP_BARHE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|49237827|emb|CAF27022.1| Polyribonucleotide nucleotidyltransferase [Bartonella henselae str. Houston-1] Length = 733 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R I + GS L G+T + ATL ++ G Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ I + Sbjct: 377 TFLLHYNFPPFSVGETGR----LGSPGRREIGHGKLAWRAIHPMLPSKESFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G I +Q + +++ L AK ++ Sbjct: 484 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKA 542 Query: 238 ISN 240 +++ Sbjct: 543 LTS 545 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 80/229 (34%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ + +G+T +L T + + + + + G + Sbjct: 14 RPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYAVGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G +KRE+ R I R+I R +R + Q+I+ VIQ D Sbjct: 74 P---GGYLKRES---RPSENETLISRLIDRPIRPLFADGYKNDTQVIVS--VIQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ + AL G +A G G I++ E S Sbjct: 126 PDILAMIASSAAL-------------TLSGVPFMGPIAGARVGYCNGQYILNPHIDEMSE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T++ ++ +E +D + + ++ Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAQELPEDIMLGAVMFGHKGLQPILDA 218 >gi|121728394|ref|ZP_01681422.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52] gi|147674727|ref|YP_001216141.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O395] gi|187611333|sp|A5F913|PNP_VIBC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|121629328|gb|EAX61760.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52] gi|146316610|gb|ABQ21149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395] gi|227012472|gb|ACP08682.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395] Length = 712 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR I R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E +++ A + D+ +IK + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222 >gi|165975991|ref|YP_001651584.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226702591|sp|B0BUD5|PNP_ACTPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|165876092|gb|ABY69140.1| polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 715 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E S++ + + + +I+ K+ + Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224 >gi|315924496|ref|ZP_07920717.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622200|gb|EFV02160.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 693 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 88/249 (35%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R R Q+R +++ GS L G+T + + ATL E + + Sbjct: 310 IRPDNRGMTQVRPLAVKVDYIPRVHGSALFTRGETQVCSVATLGLLKEAQTLDGLELESK 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ I + Sbjct: 370 KRYMHNYNFPSYSVGETRPSRGPGRREIGHG----ALAERALLPVLPSEEDFPYAIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V+ ++G T A++ G+ +AL +K VA + G++ Sbjct: 426 EVMSSNGSTSQASVCGSSMALMAAGV-------------PIKKQVAGCAMGLIKEDEKLA 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I +Q + ++ LN A++ ++ Sbjct: 473 ILTDIQGMEDFLGDMDFKVAGTEDG-ITAIQMDIKIHGIDREILTKALNQAREGRLFILG 531 Query: 233 LQKDVISNE 241 + D I+ Sbjct: 532 VMNDAIAQP 540 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 27/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R + V++ A+ + +V++GDT LL T+ E + + + + G + Sbjct: 11 RPFRVEIGEVARLAKAAAMVRYGDTSLLCNVTVSKKPREGMDFFPLSVDYEEKQYAVGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R+I R +R + ++ ++ D Sbjct: 71 P---GGFLKRE---GRPSNQAILNSRLIDRPIRPLFPKGFRNDVHVVTMVMSVEHDNAPE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + G+ + L G AA+ G++ G +++ + + Sbjct: 125 LVGMLGSSIVLS-------------ISDLPFDGPTAAVQVGLIDGEFVLNPTAAQYEKSE 171 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T ++ V+ A+ + + A I +I +++ Sbjct: 172 MHLTVAGTREA-VMMVEAGADEIP--EATMLDAILYAHKEIKKIISFIDQIVAE 222 >gi|194366584|ref|YP_002029194.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas maltophilia R551-3] gi|226702692|sp|B4SQR6|PNP_STRM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|194349388|gb|ACF52511.1| Polyribonucleotide nucleotidyltransferase [Stenotrophomonas maltophilia R551-3] Length = 702 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR + +R I++ V GS L G+T + T TL + + G Sbjct: 315 VRIDGRALDTVRPIAVKTSVLPRTHGSSLFTRGETQAIVTITLGTARDGQVIDAVSGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGETGRMMGPKRREIGHG----RLAKRGVLAVMPSLESFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGDRFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I +Q + +++ L AK Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-ISALQMDIKIEGITEEIMKQALQQAKAG 530 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 82/230 (35%), Gaps = 31/230 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +VKF DT LL +A + E + + G +P Sbjct: 15 VTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKSAREGQDFFPLTCDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGGTR 126 G KRE GR + I R+I R +R + QII + + DG Sbjct: 74 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPEIDGDI- 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL KG +AA G G I++ E Sbjct: 128 -PALIGASAALSLAGT-------------PFKGPIAAAKVGYKDGEYILNPTVSELKESQ 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ T + ++ +E A S+D + + +I + Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEDVMLGAVTFGHREMQKVINAINE 220 >gi|259047075|ref|ZP_05737476.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens ATCC 49175] gi|259036125|gb|EEW37380.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens ATCC 49175] Length = 703 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T LT+AT E +V + + Sbjct: 318 VRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQVIDGLGIEEG 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL+ V+ I + Sbjct: 378 KRFIHHYNFPQFSVGSVGR----AGSPGRREIGHGALGERALKQVIPSPEDFPYTIRLVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMAAGV-------------PIKAPVAGIAMGLISDGTNYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ L AK ++++ Sbjct: 481 VLTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILREALTQAKKARFEILE 539 Query: 233 LQKDVISNE 241 I+ Sbjct: 540 ELTSTIAEP 548 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 91/234 (38%), Gaps = 28/234 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R++ + ++K A G+ LV++GDT +LT A ++T +T Y + Sbjct: 14 RQLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGT----KQAKDTDFFPLTVNYEEKMYAA 69 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR + R+I R +R + QI + + Sbjct: 70 GKIPGGFIKRE---GRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +AL G +A + G + G +++ + D Sbjct: 127 MAAMFGSSLALC-------------ISDIPFDGPIAGVDVGRVNGEYVINPTTEQKDNSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++ + T + I V+ SA+ +++ L + I L+ Q++++ Sbjct: 174 IELSVAGTATA-INMVESSAKE--VNEEDMLGALLFGHEEIKKLVAFQEEIVRE 224 >gi|32034381|ref|ZP_00134571.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208059|ref|YP_001053284.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae L20] gi|303252208|ref|ZP_07338376.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247551|ref|ZP_07529595.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307256599|ref|ZP_07538380.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261033|ref|ZP_07542715.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263214|ref|ZP_07544834.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|187470959|sp|A3MZU3|PNP_ACTP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096735|sp|B3GXC1|PNP_ACTP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|126096851|gb|ABN73679.1| polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648991|gb|EFL79179.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855916|gb|EFM88075.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306865009|gb|EFM96911.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869335|gb|EFN01130.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871431|gb|EFN03155.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 715 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E S++ + + + +I+ K+ + Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224 >gi|307245438|ref|ZP_07527526.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254392|ref|ZP_07536230.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258851|ref|ZP_07540583.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853779|gb|EFM85996.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862691|gb|EFM94647.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867202|gb|EFM99058.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 715 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIVDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E S++ + + + +I+ K+ + Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224 >gi|308189117|ref|YP_003933248.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1] gi|308059627|gb|ADO11799.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1] Length = 740 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 344 RIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQNLDELMGERTD 403 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 404 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKAEDFPYTVRVVSE 459 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 460 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 506 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 507 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQEALNQAKGARLHILGV 565 Query: 234 QKDVISNE 241 + IS Sbjct: 566 MEQAISTP 573 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 45 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 101 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 102 IPGSFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 158 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 159 AMIGASAALALSGL-------------PFNGPIGAARVGYINDQYVLNPTADELKQSRLD 205 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T + ++ +E S++ + Sbjct: 206 LVVAGTQNAVLMV---ESEAEILSEEQMLGAV 234 >gi|254431498|ref|ZP_05045201.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001] gi|197625951|gb|EDY38510.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001] Length = 708 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 REI LT + A GS +V+ GDT +L TAT E + + G +P Sbjct: 13 REIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ ++RE+ R R+ I R+I R +R + QI+ C + Sbjct: 73 ---GSFMRRES---RPPERATLIARLIDRPMRPLFPGWMRDDLQIVATCLSLDERVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA +A G +AA+ G+L +++ Y E D+ Sbjct: 127 LAVTGASMATLLA-------------KIPFHGPMAAVRVGLLGDDFVLNPSYREIERSDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T G ++ V+ A + + ++ + +++LIK Q+ ++ + Sbjct: 174 DLVVAGTPQG-VIMVEAGANQ--LPEQDVIEGIDFGYEAVSELIKAQQALLKD 223 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 31/251 (12%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR +++R I V K GS L + G T +L+ ATL P + + Sbjct: 321 RVDGRNLDEVRPIQAAAGVLPKRVHGSALFQRGLTQVLSCATL--GTPSDAQEMDDLNPS 378 Query: 61 AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 E Y P STG + R+ G + RAL V+ + + Sbjct: 379 TEKTYLHHYNFPPYSTGETKPMRSPGRREIGHG----ALAERALVPVLPAKESFPYVLRV 434 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 + + ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 435 VSECLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGEE 481 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G I +Q + + +N A+ + Sbjct: 482 VRILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLAVGTVAEAVNQARPARLHI 540 Query: 231 IKLQKDVISNE 241 ++ + I Sbjct: 541 LEKMLEAIDKP 551 >gi|15231368|ref|NP_190207.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] gi|79314404|ref|NP_001030817.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] gi|79314427|ref|NP_001030818.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] gi|79314448|ref|NP_001030819.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] gi|145332769|ref|NP_001078250.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana] gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana] gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana] gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana] gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana] gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana] gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana] Length = 239 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 76/211 (36%), Gaps = 27/211 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R ++ +R + GS GDT +L + N + Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEV 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + SG+ G +E + ++ R ++S+ L+ + + V+ Sbjct: 65 IWK-------------PKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHD 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG AI A AL D M+ + VA C GY ++D + E Sbjct: 112 DGSLLPCAINAACAALVDAGIPMKHLA------------VAICCCLAENGYLVLDPNKLE 159 Query: 182 DSTIDVDANFVMTDSGHIVEVQGS--AERAT 210 + + A V ++ V +GS AE Sbjct: 160 EKKMTAFAYLVFPNTTLSVLPEGSSVAEGEP 190 >gi|319898331|ref|YP_004158424.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae 73] gi|319402295|emb|CBI75834.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae 73] Length = 733 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R I + GS L G+T L TL ++ G Sbjct: 317 RIDGRNPSDVRAIQSEVGILPRTHGSALFTRGETQALVVTTLGTGEDEQYIDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ I + Sbjct: 377 TFLLHYNFPPFSVGEIGR----IGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G AI + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEKFAI---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ L AKD ++ Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKA 542 Query: 238 ISN 240 +++ Sbjct: 543 LTS 545 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 82/238 (34%), Gaps = 42/238 (17%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T T + + + G + Sbjct: 14 RPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEKNYAVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE R I R+I R +R + Q+I+ VIQ D Sbjct: 74 P---GGYFKRE---NRPNESETLISRLIDRPIRPLFVEGYKNDTQVIVS--VIQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI + AL G +AA G G I++ + E Sbjct: 126 PDILAIIASSAALTLSGI-------------PFMGPIAAARIGYCNGQYILNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERAT---------FSQDHF----FAMLNLAKDRIAD 229 +D T++ ++ V+ A F Q F A++ LA+ + Sbjct: 173 SKLDLVVAGTENA-VLMVESEAHELPENVMLNAIMFGQKSFQPVINAIIKLAEVAAKE 229 >gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays] Length = 240 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 86/256 (33%), Gaps = 41/256 (16%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R + T A GS GDT +L + N + I Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + +G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 67 VWK-------------PKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 113 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYG 180 DG + AI + AL M K AISCG++ G I+D Sbjct: 114 DGSLMSCAINASCAALAFAGIPM-------------KHLAVAISCGVMDNGVVILDTSRA 160 Query: 181 EDSTIDVDANFVMTDSGHIVE----VQGSAE----------RATFSQDHFFAMLNLAKDR 226 E+ A+ V +S VE Q E S+D +F + Sbjct: 161 EEQQARSFAHLVFPNSRKSVESKDPTQRDEESERGLITCITHGAMSEDDYFNCIERGVMA 220 Query: 227 IADLIKLQKDVISNEV 242 + + + + EV Sbjct: 221 SSRISDFMRKTLQKEV 236 >gi|257464719|ref|ZP_05629090.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor 202] gi|257450379|gb|EEV24422.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor 202] Length = 711 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS L G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFIDNQFVLNPTMSEQRLSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E +++ A + ++ +I+ K+ + Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224 >gi|254229311|ref|ZP_04922728.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25] gi|262393386|ref|YP_003285240.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25] gi|151938119|gb|EDN56960.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25] gi|262336980|gb|ACY50775.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25] Length = 711 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T + TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 34/228 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + +V DT + + +++ + +T Y + G Sbjct: 17 VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEA---VAGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDIV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E T +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSQTELETSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML-------NLAKDRIAD 229 T+S ++ +E +++ A + +A I + Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVYGHDQQQVAIKAINE 222 >gi|298528722|ref|ZP_07016126.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira thiodismutans ASO3-1] gi|298512374|gb|EFI36276.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira thiodismutans ASO3-1] Length = 739 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR +R +S+ + GS L G+T LT ATL + + Sbjct: 320 IRIDGRDLKTVRPLSMEVGLLPRTHGSALFTRGETTALTIATLGSSTDIQHIETLSGDSS 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G S R+ G + RA++ V+ S I + Sbjct: 380 KSFMLHYNFPPYCVGEVKFLRGPSRREIGHGV----LAERAIQPVLPSSEDFPFTIRLVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +++ ++G + A + G +AL D +K VA I+ G++ Sbjct: 436 EIMDSNGSSSMATVCGGTLALMDAGI-------------PVKEPVAGIAMGLIRENDEYL 482 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D + G I VQ + + S + L+ A + ++ Sbjct: 483 VLTDILGDEDHLGDMDFKVAGSYDG-ITAVQMDIKISGISGEIMHQALDQALEARRHILD 541 Query: 233 LQKDVISNE 241 K VI Sbjct: 542 QMKQVIDEP 550 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 31/231 (13%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +I+ A GS LV+ GDT +L TA N +T Y + + G Sbjct: 18 KINFETGKMANQAHGSVLVQSGDTVVLVTAV----TQPMENNPGFFPLTVNYQEMSYAAG 73 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 + +RE GR R + R+I R++R + + Q++ V+ AD Sbjct: 74 KIPGSYFRREI--GRPSERETLVSRLIDRSIRPLFPETFNDEVQVMAT--VLSADPVNDP 129 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI+GA ALH G +A G + I++ Sbjct: 130 DILAISGASAALHM-------------SKIPFMGPLAGARVGYIDDEFILNPSLKLLDQS 176 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D+ T +G +V V+G A+ +D ++ A ++ ++ Q++ Sbjct: 177 DLSLMVASTRNG-VVMVEGVADFVP--EDIVARAIDWASQQVIPILDSQEE 224 >gi|148241642|ref|YP_001226799.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. RCC307] gi|187611327|sp|A5GRD7|PNP_SYNR3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|147849952|emb|CAK27446.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp. RCC307] Length = 719 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 28/234 (11%) Query: 12 REISLT-RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT RR + A GS L++ GDT +L TAT +T +Y Sbjct: 13 REIRLTTRRYAPQAGGSVLIECGDTAVLVTATRANG----REGIDFLPLTCDYEERLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 R G+ ++RE+ R R+ R+I R +R + QI+ + Sbjct: 69 GRIPGSFMRRES---RPPERATLACRLIDRPIRPLFPSWMRDDLQIVATVMSVDERVPPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+TGA +A G +AA+ G+L I++ Y E + Sbjct: 126 VLAVTGASLATLLA-------------KIPFYGPMAAVRVGLLGDDFILNPSYREIERSE 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T G +V V+ A++ ++ ++ + + +LI+ QK+ I+ Sbjct: 173 LDLVVAGTAEG-VVMVEAGAQQ--LPEEDMIEAIDFGYEAVLELIRHQKETIAE 223 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 R+ GR +Q+R IS V K GS L + G T +L+TATL + + Sbjct: 323 RVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSNE 382 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G + RAL V+ + + Sbjct: 383 KHYLHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPPKESFPYVLRVVS 438 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V+ ++G T ++ G+ +AL D + VA + G++ Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGV-------------PIAAPVAGAAMGLIREGSEVR 485 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I +Q + + + A+ +++ Sbjct: 486 VLTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLAMKTIGEAVTQARPARLHILE 544 Query: 233 LQKDVISNE 241 + + Sbjct: 545 KMLEALDKP 553 >gi|238797549|ref|ZP_04641046.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC 43969] gi|238718546|gb|EEQ10365.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC 43969] Length = 706 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKENENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S+D + Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 205 >gi|238783512|ref|ZP_04627534.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC 43970] gi|238715567|gb|EEQ07557.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC 43970] Length = 706 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKENENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S+D + Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 205 >gi|120597905|ref|YP_962479.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. W3-18-1] gi|146293923|ref|YP_001184347.1| polynucleotide phosphorylase/polyadenylase [Shewanella putrefaciens CN-32] gi|187611297|sp|A4Y9B5|PNP_SHEPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611299|sp|A1RGY0|PNP_SHESW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|120557998|gb|ABM23925.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. W3-18-1] gi|145565613|gb|ABP76548.1| Polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens CN-32] gi|319427300|gb|ADV55374.1| polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens 200] Length = 699 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGT-RGGITALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I + Sbjct: 536 MDQAIGSH 543 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 27/206 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 74 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ + T ++ Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYVLNPTVAQIETSQLN 175 Query: 189 ANFVMTDSGHIV---EVQGSAERATF 211 T S ++ E Q E Sbjct: 176 LVVAGTASAVLMVESEAQALPEEVML 201 >gi|167855122|ref|ZP_02477894.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis 29755] gi|219870717|ref|YP_002475092.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis SH0165] gi|254782722|sp|B8F492|PNP_HAEPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167853757|gb|EDS24999.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis 29755] gi|219690921|gb|ACL32144.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis SH0165] Length = 709 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS L G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T + E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E +++ A + ++ +I+ K+ + Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224 >gi|330447373|ref|ZP_08311022.1| polyribonucleotide nucleotidyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491564|dbj|GAA05519.1| polyribonucleotide nucleotidyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 708 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y P G + R+ G ++ R + +V+ + + + Sbjct: 374 YFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSIDEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTEDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSV 535 Query: 234 QKDVISNE 241 + I+ Sbjct: 536 MDNAINTP 543 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 15 VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVSPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + +++ E +D Sbjct: 129 TMIGTSAALAISGI-------------PFNGPIGAARVGYINDQFVLNPSNVELEESRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T++ ++ +E +++ + D+ +IK + Sbjct: 176 LVVAGTEAAVLMV---ESEADRLTEEQMLQAVVFGHDQQQTVIKAINE 220 >gi|320540181|ref|ZP_08039836.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica str. Tucson] gi|320029847|gb|EFW11871.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica str. Tucson] Length = 716 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 97/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + G T Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 384 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +++ + + + Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAMMPKLEDFPYTVRVVSE 440 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 441 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEADNFVV 487 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 488 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 546 Query: 234 QKDVIS 239 + IS Sbjct: 547 MEQAIS 552 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 26 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 84 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + + L Q+I + Sbjct: 85 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQVNPDIV 139 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTDELKISSLD 186 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S+D + Sbjct: 187 LVVAGT-AGAVLMVE--SEADVLSEDQMLGAV 215 >gi|238761771|ref|ZP_04622745.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC 33638] gi|238699885|gb|EEP92628.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC 33638] Length = 706 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T + ++ +E S+D + Sbjct: 177 LVVAGTAAAVLMV---ESEAQILSEDQMLGAV 205 >gi|297180386|gb|ADI16603.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [uncultured gamma proteobacterium HF0010_01E20] Length = 701 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL + + + + Sbjct: 314 RIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLRDAALIDALEGSYKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R+ G ++ R + + + + I + + Sbjct: 374 TFMLHYNFPPYSVGEAGFMSGPKRREIGHG----KLARRGVSASLPNAEDFPYTIRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D + VA ++ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PITAPVAGVAMGLVKEGNRYAV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD G + +Q + +++ + L A + ++ Sbjct: 477 LTDILGDEDHLGDMDFKVAGTDKG-VTALQMDIKIEGITEEIMESALAQAHEARIHILGE 535 Query: 234 QKDVISN 240 VIS Sbjct: 536 MNKVISE 542 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 29/235 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 + + V+K A GS +V G T +LTT + + T G +P Sbjct: 15 VVMETNKVAKQASGSVIVTIGSTVVLTTVVGAKNPRPGQDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR + R+I R +R + + Q++ D A Sbjct: 74 --GGFFRRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVLSADKDQDPDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL KG + A G + G I++ Y ++ Sbjct: 129 AMIGTSAALAISGI-------------PFKGPLGAARVGYIDGNYILNPGYESLKESMLN 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--VISNE 241 T+S ++ +E ++D + + +IK + I+ + Sbjct: 176 MTVAGTESAVLMV---ESEAKEMTEDEMLGAVLFGHQEMQAIIKAVTELAAIAGK 227 >gi|58040019|ref|YP_191983.1| polynucleotide phosphorylase/polyadenylase [Gluconobacter oxydans 621H] gi|81351767|sp|Q5FQL9|PNP_GLUOX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|58002433|gb|AAW61327.1| Polyribonucleotide nucleotidyltransferase [Gluconobacter oxydans 621H] Length = 716 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I + A GS L G+T L ATL I + G Sbjct: 313 IRIDGRDLKTVRPILAEVGILPRAHGSSLFTRGETQALVVATLGTGQDEQIIDALEGEYR 372 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R GR R ++ RA+ ++ + + Sbjct: 373 SNFMLHYNFPPYSVGE-CGRMGSPGR---REIGHGKLAWRAIHPLLPSKEAFPYTMRVVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYP 173 ++ +++G + A + G+ +AL D L VA I+ G++ GY Sbjct: 429 EITESNGSSSMATVCGSSLALMDAGV-------------PLPRPVAGIAMGLIKEDRGYA 475 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T G + +Q + + + + L A++ ++ Sbjct: 476 VLSDILGDEDHLGDMDFKVAGTADG-VTALQMDIKITSITPEIMKIALEQAREGRIHILG 534 Query: 233 LQKDVISN 240 ++ Sbjct: 535 EMAKALTE 542 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 24/194 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ ++ +GDT +L TA +++ + + G + Sbjct: 14 RPLILETGKVARQADGAVMITYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKAYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R+I R +R + + QI + Sbjct: 74 P---GGFFKRE---GRPSEAEVLNARLIDRPIRPLFPENFRNEVQITATVLSYDNENDPA 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ G AL G VA G + G +V+ + E Sbjct: 128 LVSLIGCSAALTLSGI-------------PFFGPVACARIGRIDGKLVVNPTHDEIKDST 174 Query: 187 VDANFVMTDSGHIV 200 +D T G ++ Sbjct: 175 LDLMVAGTAEGVLM 188 >gi|68065138|ref|XP_674553.1| exosome complex exonuclease [Plasmodium berghei strain ANKA] gi|56493201|emb|CAH99095.1| exosome complex exonuclease rrp41, putative [Plasmodium berghei] Length = 246 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 94/233 (40%), Gaps = 27/233 (11%) Query: 2 RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 RL GR+ N+ R I + + A+G + G+T +L+ ++ + + Sbjct: 13 RLDGRKCNEYRLIKINMGNQNIFNDADGFAFYEIGNTKILSYIQGPTEL---KKTDEKCS 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I + + P + ++ K++ + EI I +++ L + +I I + Sbjct: 70 IKCDVFLSPFNVYDKRKKKTK----DNITNEISAYIRNICENIILLDLYKNSEINIFLYI 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 I+ DGG + AAI +AL D +K ++A S L IVD + Sbjct: 126 IERDGGIKHAAINTCILALIDAGIA-------------IKYFISACSVLYLQNKIIVDGN 172 Query: 179 YGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 E ++ + V+ ++ I+ ++ AE D F +M+ D ++ Sbjct: 173 QLEINSGSPELTMVIELNTHKIILLEFDAE---VPIDIFESMVQTCIDSCVNI 222 >gi|153215841|ref|ZP_01950173.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587] gi|153829184|ref|ZP_01981851.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39] gi|229520938|ref|ZP_04410360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM 11079-80] gi|229530452|ref|ZP_04419840.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 12129(1)] gi|124114558|gb|EAY33378.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587] gi|148875373|gb|EDL73508.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39] gi|229332225|gb|EEN97713.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 12129(1)] gi|229342171|gb|EEO07167.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM 11079-80] Length = 709 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR I R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E +++ A + D+ +IK + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222 >gi|315179225|gb|ADT86139.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC 11218] Length = 711 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSIDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVISN 240 IS Sbjct: 538 MDQAISG 544 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E +T +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELATSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+S ++ +E S++ + + D+ +IK + Sbjct: 178 LVVAGTESAVLMV---ESEAEVLSEEEMLSAVVFGHDQQQTVIKAINE 222 >gi|303248250|ref|ZP_07334513.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio fructosovorans JJ] gi|302490388|gb|EFL50299.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio fructosovorans JJ] Length = 751 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56 +RL GR +R I + V GS + G+T L A T +E+ + + Sbjct: 320 IRLDGRDTKTVRPIGIEVGVLPRTHGSTIFARGETKSLCVATLGSTGDEQKIETLNGETY 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G S R+ G + R++ V+ + + + Sbjct: 380 KRFMLHYNFPPYCVGEVKPMRGPSRREIGHG----ALAERSILPVLPGADEFPFTMRVVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 V++++G + A++ GA +AL D +K VA I+ G++ Sbjct: 436 QVMESNGSSSMASVCGASLALMDAGV-------------PVKEPVAGIAMGLIKEGDDFL 482 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T +G + +Q + Q L+ AK+ ++ Sbjct: 483 VLTDILGDEDAMGDMDFKVAGTANG-VTGIQMDIKITGIPQAVMRQALSQAKEARLHILG 541 Query: 233 LQKDVIS 239 +V++ Sbjct: 542 RMAEVLA 548 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 30/230 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRS 69 + L ++ A+G+ V+ G T +L TA L E+ + + ++ G +P Sbjct: 19 VILETGRLANQADGAVWVQSGGTVVLVTACTQVLPEEKGFFPLTVDYQEMSYAAGRIP-- 76 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRT 127 G+ +RE GR R + R+I R R + QII V+ ADG Sbjct: 77 -GSYFRREI--GRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIAT--VLSADGVVEPDV 131 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+T A ALH +G +A G + G + + + + Sbjct: 132 LALTAASSALH-------------ISKIPFEGPIAGGRVGYVDGAFVFNPT-VQQMNGES 177 Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 N V S +V V+G + S+D L + + LI LQ++ Sbjct: 178 TLNLVFAASRDAVVMVEGGGQ--FVSEDMLADALEWGHNSVQPLIDLQEE 225 >gi|149909276|ref|ZP_01897932.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36] gi|149807593|gb|EDM67541.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36] Length = 705 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +S+ V GS L G+T L TATL + ++ G Sbjct: 314 RIDGRDPEMIRALSVMTGVLPRTHGSALFTRGETQALVTATLGTERDAQRIDSLTGETID 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLMHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPNADEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D ++ + VL G + D+ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVLDGD---------RSVILSDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D + +G I +Q + ++D L AK ++ + Sbjct: 481 LGDEDHLGDMDFKVAGSSAG-ITALQMDIKIEGITKDIMQKALVQAKAARLHILSVMDQA 539 Query: 238 ISN 240 I+ Sbjct: 540 IAT 542 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + + GDT +L + E + + T G +P Sbjct: 15 VTLETGVIARQATAAVMASIGDTSVLVSVVGKKQAEAGRDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + Q++ + + Sbjct: 74 --GGFFKRE---GRPSEGETLTCRLIDRPIRPLFPAGFKNEVQVVATVVSVNPEIQPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G I++ E + +D Sbjct: 129 ALIGVSAALS-------------ISGMPFNGPIGAARIGFQNDEYILNPSTSELAESQLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T++ ++ +E S++ + +++ +I+ K+ Sbjct: 176 LVVAGTENAVLMV---ESEAEILSEEQMLGAVMYGHEQMQVVIEAIKE 220 >gi|15640667|ref|NP_230296.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587861|ref|ZP_01677618.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80] gi|153802011|ref|ZP_01956597.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3] gi|153818691|ref|ZP_01971358.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC 8457] gi|153822539|ref|ZP_01975206.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33] gi|227080828|ref|YP_002809379.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2] gi|229505731|ref|ZP_04395241.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX 330286] gi|229509236|ref|ZP_04398721.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33] gi|229519556|ref|ZP_04408999.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9] gi|229608842|ref|YP_002879490.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae MJ-1236] gi|254850881|ref|ZP_05240231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10] gi|255744136|ref|ZP_05418089.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101] gi|262156112|ref|ZP_06029231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE 91/1] gi|298500763|ref|ZP_07010566.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757] gi|81545361|sp|Q9KU76|PNP_VIBCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782745|sp|C3LSQ2|PNP_VIBCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|9655083|gb|AAF93813.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547897|gb|EAX57981.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80] gi|124122470|gb|EAY41213.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3] gi|126510771|gb|EAZ73365.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC 8457] gi|126519957|gb|EAZ77180.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33] gi|227008716|gb|ACP04928.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2] gi|229344245|gb|EEO09220.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9] gi|229353808|gb|EEO18744.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33] gi|229357954|gb|EEO22871.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX 330286] gi|229371497|gb|ACQ61920.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MJ-1236] gi|254846586|gb|EET25000.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10] gi|255738076|gb|EET93468.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101] gi|262030148|gb|EEY48793.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE 91/1] gi|297540544|gb|EFH76602.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757] Length = 709 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR I R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E +++ A + D+ +IK + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222 >gi|307244366|ref|ZP_07526479.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678] gi|306492267|gb|EFM64307.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678] Length = 696 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 18/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKH 56 +R R +++R I + GS + G T +L TL V + ++ Sbjct: 316 VRPDNRSLDEIRPIWCEVGMIPRTHGSAIFTRGQTQVLNVTTLGALGDVQRLDGLDEEEN 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + RAL V+ I + Sbjct: 376 KRYMHHYNFPAYSVGETRPSRGPGRREIGHG----ALAERALLPVIPSKEDFPYAIRLVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ + ++L D ++D + + A+ + D Sbjct: 432 EVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHGKVAV---------LSD 482 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G + +Q + A + L A++ ++ K Sbjct: 483 IQGMEDHLGDMDFKVAGTEKG-VTAIQMDIKIAGIDEPVLRQALKQAREGRLHILGEMKK 541 Query: 237 VISNE 241 VI+ Sbjct: 542 VITEP 546 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 86/228 (37%), Gaps = 31/228 (13%) Query: 12 REISLTRRVSKYAE---GSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64 R +++ K AE G+C++ +GDT L+ T + + + + G Sbjct: 14 RTLTVEIG--KIAEMTNGNCIISYGDTMLMVNVTKSAQPRDGIDFFPLSVDFEEKLYSVG 71 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G +KRE GR ++ R+I R +R + Q++ ++ D Sbjct: 72 KIP---GGFLKRE---GRASEKATLTSRLIDRPIRPLFPEGFRNDVQVVATVLSVEQDCT 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ G+ +AL G A++ G++ G +++ + + Sbjct: 126 PDIVAMLGSSIALS-------------ISDIPFNGPTASVLVGLIDGEFVLNPN--QQQR 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D D + V++ + + + + +L A + I +++ Sbjct: 171 EDSDLHLVVSGTKEAIMMVEAGANEVDDNVVLDGIL-YAHEEIKKIVE 217 >gi|326202154|ref|ZP_08192024.1| polyribonucleotide nucleotidyltransferase [Clostridium papyrosolvens DSM 2782] gi|325987949|gb|EGD48775.1| polyribonucleotide nucleotidyltransferase [Clostridium papyrosolvens DSM 2782] Length = 706 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 86/238 (36%), Gaps = 23/238 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +++R +S + GS L + G T +LTT TL + + T Sbjct: 315 RVDGRSLDEIRPLSAEVGILPRTHGSGLFQRGQTQVLTTITLGAMGDVQKMDGIDTEETK 374 Query: 62 EYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 Y M + EA + R G R + R+L V+ + +V+ Sbjct: 375 RY-MHHYNFPGYSVGEAKTSRGPGRREIGHGALAERSLVPVIPTEIEFPYAFRLVSEVLM 433 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-------P 173 ++G T ++ G+ +AL D +K VA IS G++ Sbjct: 434 SNGSTSQGSVCGSTLALMDAGV-------------PIKAPVAGISAGLVIDEENPDNFVT 480 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 +D+ ED D+D T G I +Q + + + L K +I Sbjct: 481 FMDIQGIEDFFGDMDFKVAGTTEG-ITAIQMDIKVDGLNYEIIRQAFELTKKGRLQII 537 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 81/225 (36%), Gaps = 29/225 (12%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGML 66 R +++ A GS L+++GDT ++ +A+ + + + + + G + Sbjct: 15 RTLTVETGKLAQLANGSALIRYGDTVIMSSATASASPRDGIDFFPLSVDYEERLYAVGKI 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + ++ ++ D Sbjct: 75 P---GGFIKRE---GKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMSVEQDNSPE 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA VA+ G + + G++ G +V+ + E+ Sbjct: 129 IAAMIGASVAIS-------------ISDIPFNGPIGGVVLGLVDGEVVVNPN--EEQRAK 173 Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + + I ++ A+ D + + I + Sbjct: 174 SKMYVTLAGTKEKITMIEAGAD--IVDDDVMLDAIKKGHEVIKQI 216 >gi|291276965|ref|YP_003516737.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae 12198] gi|290964159|emb|CBG40004.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae 12198] Length = 693 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 23/243 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54 +R GR+ ++R IS+ + +A GS L G T L ATL + R Sbjct: 316 IRADGRKTTEVRPISIETNILPFAHGSVLFTRGQTQSLVVATLGSENDAQTRENLNDSIP 375 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + T Y S G + +V R+ G + +AL + R + + Sbjct: 376 QKENFTFHYNFPGFSVGEALMIGSVGRRELGHG----NLAKKALEDSIIEK---DRTLRL 428 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++++++G + A++ G +A+ C + + +G A+ + Sbjct: 429 VSEILESNGSSSMASVCGGSLAICACGMESSGLVAGVAMGLIKEGSEYAV---------L 479 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D ++ I +Q + L A+D ++++ Sbjct: 480 TDIMGLEDHDGDMDFKVAGNENF-ITAMQMDIKLGGLELGILKEALYQARDARLHILQIM 538 Query: 235 KDV 237 ++ Sbjct: 539 QEA 541 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 28/221 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75 V+K A GS L + G T +L + +++K ++ +Y +TG +K Sbjct: 20 VAKQASGSVLYERGGTVILASVAIDDK----DVEGDFLPLSVQYIEKSYATGKIPGGFIK 75 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE G+ G R+I R LR + + I V+ DG + Sbjct: 76 RE---GKPGEFETLTSRIIDRTLRPLFPKH--YRKTTHISVFVLSYDGESD--------- 121 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 + + AA+ G + G +++ E + +D ++ Sbjct: 122 --LQVCALNAAANALLLSAAPFCVPTAAVRIGRIDGVFVLNPSRSELANSALDL-YISGS 178 Query: 196 SGHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKL 233 G ++ ++ + + +++ + LAK I +L L Sbjct: 179 FGDLLMIEMKGGSTKESGINEEELLEAITLAKAHIQELSSL 219 >gi|259156595|gb|ACV96538.1| polyribonucleotide nucleotidyltransferase [Vibrio fluvialis Ind1] Length = 708 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR I R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E +++ A + D+ +IK + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222 >gi|187610329|sp|A7MIN6|PNP_ENTS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 711 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 318 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 378 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPAADRFPYTVRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 434 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENFVV 480 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITKEIMQVALNQAKGARLHILGV 539 Query: 234 QKDVIS 239 + I+ Sbjct: 540 MEQAIN 545 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G +P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R LR + + Q+I + Sbjct: 75 --GGFFRRE---GRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E + +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKSSKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T+S ++ +E S+D + ++ I ++ L K+ Sbjct: 177 LVVAGTESAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEA 226 >gi|91228271|ref|ZP_01262207.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus 12G01] gi|269966864|ref|ZP_06180937.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus 40B] gi|91188148|gb|EAS74450.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus 12G01] gi|269828531|gb|EEZ82792.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus 40B] Length = 711 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T + TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 66.7 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 29/226 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + +V DT + + +++ + +T Y + G Sbjct: 17 VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEA---VAGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDIV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E T +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSQTELETSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 T+S ++ +E +++ A + D + +Q Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVYGHD--QQQVAIQ 218 >gi|190149890|ref|YP_001968415.1| polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915021|gb|ACE61273.1| polyribonucleotide nucleotidyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 685 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + K Sbjct: 284 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 343 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 344 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 399 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 400 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 446 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 447 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 505 Query: 234 QKDVI 238 + I Sbjct: 506 MEQAI 510 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 26/211 (12%) Query: 34 DTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89 DT + T ++E + + T G +P G KRE GR Sbjct: 6 DTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP---GGFFKRE---GRPSEGETL 59 Query: 90 IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149 I R+I R +R + Q+I + A+ GA AL Sbjct: 60 IARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALS----------- 108 Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209 G + A G + +++ E +D TD ++ +E Sbjct: 109 --LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVLMV---ESEAD 163 Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 S++ + + + +I+ K+ + Sbjct: 164 ILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 194 >gi|167626449|ref|YP_001676949.1| polynucleotide phosphorylase/polyadenylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189037306|sp|B0TZ09|PNP_FRAP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167596450|gb|ABZ86448.1| Polyribonucleotide nucleotidyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 693 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 87/245 (35%), Gaps = 19/245 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I++ V GS L G+T L TL + + Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKS 376 Query: 58 WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + A R+ G + + RA ++V + I Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRIVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G + A + G+ +++ D + + + + G A+ + D Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G + +Q + S++ A+ ++ + + Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQAFEQARTGRLHILGIMNE 542 Query: 237 VISNE 241 VI Sbjct: 543 VIREH 547 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 30/221 (13%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 T +++ A+GS V G+ +L T ++ + + + T G +P G Sbjct: 19 TGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTYAAGKIP---GG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130 ++RE GR I R+I R++R QI+ V+ DG A+ Sbjct: 76 FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGSFSPDMLAL 130 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA +L +D +A + G G I++ + E D+D Sbjct: 131 IGASASLAISGAPYDDI-------------IAGVRVGYTNGKYILNPNKEELKESDLDLV 177 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 TD I+ V+ +E + + + A + +I Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215 >gi|262191202|ref|ZP_06049401.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT 5369-93] gi|262032904|gb|EEY51443.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT 5369-93] Length = 708 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR I R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E +++ A + D+ +IK + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222 >gi|224043308|ref|XP_002196618.1| PREDICTED: similar to exosome component 6 [Taeniopygia guttata] Length = 276 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P + G+I Sbjct: 23 RPDGRELGEFRTTTVNIGSITTADGSALVKLGNTTVICGVKAELAAPA-ADSANKGYIVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 LP R + SG G +Q + I + ++ L G ++ Sbjct: 82 NVE-LPSLCAERFR----SGPPGEEAQAASQFIADVIENSQMIVKEDLCIANGKLAWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A++ AL + + + + K + +++ H A Sbjct: 137 CDIICLDYDGNLLDASVFALLAALKNVQLPSVTINEETGLSEVNLKQKNPLIIRKHPVAT 196 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ V + G + V + + + A Sbjct: 197 SFAIFDDTLLIVDPTAEEEDLATGTVTIVTDEEGRLCSVHKPG-GSPLTGAKLQDCITRA 255 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL VI + Sbjct: 256 ITRHKEVKKLIDKVIKS 272 >gi|54307819|ref|YP_128839.1| polynucleotide phosphorylase/polyadenylase [Photobacterium profundum SS9] gi|81400130|sp|Q6LUI8|PNP_PHOPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|46912242|emb|CAG19037.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium profundum SS9] Length = 707 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR+++ +R + + V GS L G+T L TATL + I ++ G Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVEEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD G I +Q + +++ LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSV 535 Query: 234 QKDVISNE 241 D I Sbjct: 536 MDDAIGTH 543 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 69/234 (29%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + + DT + + + E + + T G +P Sbjct: 15 VTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + + Sbjct: 74 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVNPEVNPDMI 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + AL G + A G + +++ E +D Sbjct: 129 TMIATSAALA-------------ISGLPFNGPIGAARVGFINDQFVLNPSNTELEESRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T ++ +E S++ + D Q+ V+ N + Sbjct: 176 LVVSGTKDAVLMV---ESEADRLSEETMLQAVVYGHD--------QQQVVINAI 218 >gi|238793025|ref|ZP_04636654.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC 29909] gi|238727625|gb|EEQ19150.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC 29909] Length = 706 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T ++ +E S+D + Sbjct: 177 LVVAGTADAVLMV---ESEAQILSEDQMLGAV 205 >gi|114562173|ref|YP_749686.1| polynucleotide phosphorylase/polyadenylase [Shewanella frigidimarina NCIMB 400] gi|122300513|sp|Q086G7|PNP_SHEFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114333466|gb|ABI70848.1| Polyribonucleotide nucleotidyltransferase [Shewanella frigidimarina NCIMB 400] Length = 698 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + I + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGMNAVMPSAEEFPYSIRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I Sbjct: 536 MDQAIGTH 543 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 75/234 (32%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T ++ + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 74 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + +++ D Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINDEYVLNPTV--DQLATSS 173 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N V+ + V + S E +++ + D Q+ V+ + + Sbjct: 174 LNLVVAGTKAAVLMVES-EAKALAEEIMLGAVTYGHD--------QQQVVVDAI 218 >gi|315497234|ref|YP_004086038.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis excentricus CB 48] gi|315415246|gb|ADU11887.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis excentricus CB 48] Length = 760 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +++R+I V GS L G+T L ATL + G Sbjct: 327 RVDGRAVDKVRQIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYKE 386 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 387 RFLLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAIRPMLPSAEEFPYTLRVVSE 442 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A + G ++L D LK V+ I+ G++ GY + Sbjct: 443 ITESNGSSSMATVCGTSLSLMDAGV-------------PLKRPVSGIAMGLILEKDGYAV 489 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L A + ++ Sbjct: 490 LSDILGDEDHLGDMDFKVAGTELG-ITSLQMDIKVPGITEEIMTKALRQANEGRLHILGE 548 Query: 234 QKDVISN 240 IS Sbjct: 549 MNKAISG 555 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 27/227 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R+++L +++ A+ + L +G+T +L T +T Y + Sbjct: 24 RKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKP---GQDFFPLTVNYQEKTFAA 80 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + + R+I R +R + Q+++ + Sbjct: 81 GKIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLSHDMENDPD 137 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + A AL G + G++ +++ + Sbjct: 138 ILGMVAASAAL-------------TLSGVPFMGPIGGARVGVINDEYVLNPSLDQMKESA 184 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T + +E S+D L A + +I Sbjct: 185 LDLVVAGTQD---ALMMVESEAQELSEDKMLGALMFAHAGMQPVIDA 228 >gi|229512909|ref|ZP_04402376.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21] gi|229350158|gb|EEO15111.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21] Length = 708 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR I R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E +++ A + D+ +IK + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222 >gi|154254063|ref|YP_001414887.1| polynucleotide phosphorylase/polyadenylase [Parvibaculum lavamentivorans DS-1] gi|187610324|sp|A7HZ97|PNP_PARL1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|154158013|gb|ABS65230.1| Polyribonucleotide nucleotidyltransferase [Parvibaculum lavamentivorans DS-1] Length = 728 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I V GS L G+T L ATL + G Sbjct: 316 RIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RALR+V+ + + + Sbjct: 376 NFLLHYNFPPFSVGETGRVGFTGRREVGHG----KLAWRALRAVLPPKTEFPYTLRLVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G+ +A+ D ++ + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + ++ L AK ++ Sbjct: 483 LGDEDHLGDMDFKVAGTQEG-VTSLQMDIKITGINERIMKQALAQAKGGRLHILGEMAKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 38/236 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +GDT +L T E K + + T G + Sbjct: 14 RTLVLETGKIARQADGAVLATYGDTTVLATVVGERKPKPGLDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I + Sbjct: 74 P---GGFFKRE---GRPSEKETLVSRLIDRPIRPLFIKGFKNETQVIATVVSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ AL G + A G + G ++ E Sbjct: 128 IVAMIAVSAAL-------------TISGLPFLGPIGAARVGYIGGEYKLNPMIDEMPESA 174 Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229 +D T ++ V+ A+ + F F +++ +A+ + Sbjct: 175 LDLVVAGTADA-VMMVESEAKELSEDIMLGAVMFGHKEFQPVIDMIIRMAEKCAKE 229 >gi|78779675|ref|YP_397787.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9312] gi|123553957|sp|Q319U4|PNP_PROM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78713174|gb|ABB50351.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9312] Length = 721 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 95/238 (39%), Gaps = 36/238 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A GS +++ GDT LL TAT K + +Y Sbjct: 13 REIRLTTGLYAPQANGSVMIECGDTSLLVTATKTTK----KEVADFLPLICDYEEKLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122 R G ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 69 GRIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPAD 125 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 A+TGA +A G +AA+ G++ I++ Y E Sbjct: 126 ----VLAVTGASIA-------------TLLGEIPFHGPMAAVRVGLIGDDFILNPSYREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + + +LIK Q D++ + Sbjct: 169 EKGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYESVTELIKSQVDLLKD 223 Score = 94.8 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 94/251 (37%), Gaps = 31/251 (12%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR+ +++R+IS + + K GS L + G T +L+T TL P + + Sbjct: 323 RVDGRELDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380 Query: 61 AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 E Y P S G R+ G + RA+ V+ + + Sbjct: 381 TEKTYLHHYNFPPFSVGETRPMRTPGRREIGHG----ALAERAIIPVLPGKETFPYVLRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ ++L D LK V+ + G++ Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKALVSGTAMGLIKEGKE 483 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G I +Q + S + A+ + Sbjct: 484 IRILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLSVSVISDAIKKARPARLHI 542 Query: 231 IKLQKDVISNE 241 ++ ++ I Sbjct: 543 LEKMQEAIDKP 553 >gi|153826503|ref|ZP_01979170.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2] gi|254226546|ref|ZP_04920129.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51] gi|254291886|ref|ZP_04962668.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae AM-19226] gi|125620950|gb|EAZ49301.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51] gi|149739683|gb|EDM53890.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2] gi|150422172|gb|EDN14137.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae AM-19226] Length = 708 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR I R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E +++ A + D+ +IK + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222 >gi|307207928|gb|EFN85487.1| Exosome complex exonuclease RRP43 [Harpegnathos saltator] Length = 279 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 88/258 (34%), Gaps = 25/258 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ R IS+ A+ S + K G T ++ E +P + G+I Sbjct: 22 IRPDGRKFLSFRPISINVSSIVQADSSAIFKLGSTTVVCGIKAELAIPK-TDTPECGYII 80 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALG---SRQIII- 114 + P + G ++Q I ++I L+ + +DL L + + + Sbjct: 81 PNVELSPLCSPKFR-----PGPPSEQAQVISKLIDIILKNSTAIDLKDLCICKRKLVWVL 135 Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAA 163 CD+ + +G A AL + K + V+K + Sbjct: 136 YCDMLCLNYNGSVIDACTGALTAALKTLTLPEVNYNLETGVTVVHPKKRKPFVMKMLPVS 195 Query: 164 ISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222 IS + IVD E+S + VM I V SQ F + + Sbjct: 196 ISFAIFEKQMLIVDPTDEEESLSLGRLSVVMDSEEEICYVHKPG-GIPISQHLFSKAVEI 254 Query: 223 AKDRIADLIKLQKDVISN 240 AK R + L IS Sbjct: 255 AKTRADLVRSLIHAAIST 272 >gi|317153855|ref|YP_004121903.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316944106|gb|ADU63157.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio aespoeensis Aspo-2] Length = 754 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHG- 57 +R+ GR +R +S+ V GSCL + G+T L ATL + Sbjct: 319 LRIDGRDTTTVRALSIETGVLPMTHGSCLFRRGETSALAVATLGSTRDEQRYDSLLGDAT 378 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G S R+ G + RA+ V+ I + Sbjct: 379 KRFMLHYNFPPYCVGEARMLRGTSRREVGHG----ALAERAIAPVLPNQDEFPFTIRVVS 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A++ GA ++L D + VA I+ G+ Sbjct: 435 EIMESNGSSSMASVCGATLSLMDAGV-------------PISAPVAGIAMGLCKENEQFF 481 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I +Q + + D L AKD ++ Sbjct: 482 VLTDILGDEDALGDMDFKVAGTRDG-ITSIQMDIKISGIPSDVLRKALYQAKDARVHILD 540 Query: 233 LQKDVISNE 241 +V++ Sbjct: 541 HMAEVLAEP 549 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 37/234 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +I++ ++ A G+ +K G T +L T+T + +T Y + + G Sbjct: 18 DITIESGKYARQASGAVTIKSGGTVILVTST----TQPIEVDRGFFPLTCNYQEMAYAAG 73 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N +RE GR R I R+I R +R + QII V+ AD Sbjct: 74 RVPGNYFRRE---GRPSERETLISRLIDRPIRPLFAKGFADEVQIIAT--VLSADKHVNP 128 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY--GEDS 183 A+TGA A H G + G + ++ Y E+ Sbjct: 129 DVLALTGASAATH-------------ISKMPFLGPIVGARVGYVDNQFVLFPSYKGMEEL 175 Query: 184 TIDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + N + + +V V+G A S+D L +++ L +Q + Sbjct: 176 SS---LNLIFAATREAMVMVEGGA--NFVSEDLVADALAWGHEQVKPLFDIQDE 224 >gi|99079919|ref|YP_612073.1| polynucleotide phosphorylase/polyadenylase [Ruegeria sp. TM1040] gi|123077834|sp|Q1GKK5|PNP_SILST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|99036199|gb|ABF62811.1| polyribonucleotide nucleotidyltransferase [Ruegeria sp. TM1040] Length = 711 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 27/234 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +Q+R I + GS L G+T L TL + HG + Sbjct: 318 RIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLVLEEDGSYG 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T++G I +Q + A + + L AK Sbjct: 481 ILTDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMKNALAQAKAG 533 Score = 69.0 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L V++ A+G+ + G+T ++ T + +T Y + Sbjct: 16 LTLETGKVARQADGTVIATLGETSVMANVTYAREQKP---GQDFFPLTVHYQEKYYAAGK 72 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 73 IPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G +A G G I++ D D Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAGARVGYEDGEYILNPTV--DDMQD 172 Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + N V ++ V+ +E +++ + A ++I +I L Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELTEEEMLGAVTFAHEQIQPVIDL 224 >gi|297580773|ref|ZP_06942699.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385] gi|297535189|gb|EFH74024.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385] Length = 709 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR I R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E +++ A + D+ +IK + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222 >gi|148976703|ref|ZP_01813390.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium SWAT-3] gi|145964054|gb|EDK29312.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium SWAT-3] Length = 706 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T + TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNDG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + +V DT + + +++ ++ +T Y + G Sbjct: 17 VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEA---VQGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDMV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E T +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T +G ++ V+ +E +++ + + D Q+ V+ N + Sbjct: 178 LVVSGT-AGAVLMVE--SEADNLTEEEMLSAVVFGHD--------QQQVVINAI 220 >gi|307128697|ref|YP_003880727.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia muelleri CARI] gi|306483159|gb|ADM90029.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia muelleri CARI] Length = 710 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 30/241 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +RL GR + +R IS GS + G+T L+T TL + + + Sbjct: 319 IRLDGRSLDDIRNISSKVDCLPGVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVIIQDK 378 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + VS R+ G + RAL++++ I + Sbjct: 379 QKFYLHYNFPPFSTGEIKLLKGVSRREIGHG----NLAQRALKNIIPFD--NPYTIRVVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 DV++++G + A + + +AL D +K V+ IS G++ G Sbjct: 433 DVLESNGSSSMATVCASTLALMDAGI-------------PIKRPVSGISMGLIFNKFTGE 479 Query: 173 PIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 ++ D+ ED+ D+D T G + Q + S D + AK I + Sbjct: 480 ALILSDILGDEDNIGDMDFKITGTKYG-MTACQMDLKIYGISYDILLKTILKAKKGIIFI 538 Query: 231 I 231 I Sbjct: 539 I 539 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 33/236 (13%) Query: 4 SGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGW 58 GR +S+ A GS +V+ +T L+ T + ++ V N + Sbjct: 14 DGRT------LSIETGYLACQANGSAVVRMANTSLIATVVVSTEEKKGVNFLPLNIDYRE 67 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + G +P G +KRE GR R++ R LR + QI+I + Sbjct: 68 KYSAGGKIP---GGFIKRE---GRPSDEEILTMRLVDRLLRPLFPKIFYKEIQIMIS--L 119 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 + D L D L + + + KG V+A+ + I++ Sbjct: 120 LSYDINV-----------LPDGLAGLVASTAVYLSGIPFKGPVSAVRIIRMKNLFIINPG 168 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + D+D V I+ V+G E S+ ++ +A I IK Q Sbjct: 169 IEDVKKSDIDL-IVGGSINSILMVEG--EMKEVSEKEIMKIIKIAHFYIKRQIKAQ 221 >gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500] Length = 233 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 30/243 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R NQ+R I + A+GS ++ +L +V R K T Sbjct: 2 VRIDKRNNNQIRSIESELALLNKADGSAKFSLDNSSVLAAIYGPVEVNP--RKEKISKAT 59 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 E P S G Q +++E + +I A+ SV+ I I V Sbjct: 60 VEVVFTPDS-----------GNQNYQTKEQESLIRNAIESVIMTMLHPRTLISIIIQVYS 108 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179 DG + +I A +AL D + +A+IS G +D Sbjct: 109 TDGSIVSCSINAACLALLDAGIELNSL-------------IASISLSFNSDGQIYLDPTM 155 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E++ A + ++ ++ S ++ L LA+ ++ + + Sbjct: 156 KEENESKATAIYAFNSQLKLMMIKSSG---IITEQQNQEALQLARSSCERILAYIRTAVK 212 Query: 240 NEV 242 + Sbjct: 213 TRI 215 >gi|125773375|ref|XP_001357946.1| GA10930 [Drosophila pseudoobscura pseudoobscura] gi|195165852|ref|XP_002023752.1| GL27239 [Drosophila persimilis] gi|54637680|gb|EAL27082.1| GA10930 [Drosophila pseudoobscura pseudoobscura] gi|194105912|gb|EDW27955.1| GL27239 [Drosophila persimilis] Length = 769 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 87/249 (34%), Gaps = 17/249 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 R GR + +R IS + K GS L + G T + T +L+ ++ G Sbjct: 353 RCDGRDYDTLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDSLAALDSG 412 Query: 58 WITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 + A Y P +TG + G G R + R+L + + Sbjct: 413 GLKAKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERSLLPTLPHD--YPFTV 466 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A++ G +AL D + + + V K + + Sbjct: 467 RLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKYE-NDDTKHLQDYR 525 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G +Q + L A D + ++ Sbjct: 526 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKVPGIPLKVVMESLQKATDAKSKILD 584 Query: 233 LQKDVISNE 241 + + I Sbjct: 585 IMAEAIREP 593 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 86/235 (36%), Gaps = 32/235 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R +S++ ++A G+ + + GDT ++ TA + K + +Y + ++ Sbjct: 48 RNMSISSGKLARFANGTAVCQMGDTAVMVTAVAKPKPTP---GQNFMPLVVDYRLKNAAS 104 Query: 71 GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G R+ + G +EI R+I R+LR + + Q++ + + A Sbjct: 105 G-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFNKDYRTETQLVCNMLAMDAVHSPDIL 163 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 AI A +AL G + A+ G+ G +++ E + +D Sbjct: 164 AINAASMALS-------------LSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLD 210 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQKD 236 T +V ++G +L K I ++ +LQK Sbjct: 211 LVVSATKQNLVVMLEGKGNVVL-----MQDLLKAIKQGTREAQFIIQEIERLQKA 260 >gi|260771169|ref|ZP_05880096.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP 102972] gi|260613766|gb|EEX38958.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP 102972] Length = 711 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSIDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEEDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVISN 240 IS Sbjct: 538 MDQAISG 544 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E +T +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELATSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+S ++ +E S++ + + D+ +IK + Sbjct: 178 LVVAGTESAVLMV---ESEAEVLSEEEMLSAVVFGHDQQQTVIKAINE 222 >gi|229525300|ref|ZP_04414705.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv. albensis VL426] gi|229338881|gb|EEO03898.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv. albensis VL426] Length = 709 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR I R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD+ ++ +E +++ A + D+ +IK + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222 >gi|227538513|ref|ZP_03968562.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227241432|gb|EEI91447.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 729 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 84/236 (35%), Gaps = 28/236 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +RL GR +R I A GS + G+T LT+ TL K + + + Sbjct: 318 IRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQMIDGAFINGY 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y STG R+ G + R+L+ V+ A I + Sbjct: 378 NKFILHYNFPAFSTGEVRPNRGPGRREVGHG----NLAMRSLKQVLPADAENPYTIRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D+++++G + A + +AL D + K V+ I+ G++ Sbjct: 434 DILESNGSSSMATVCAGTLALMDAGVKL-------------KAPVSGIAMGLITDEKTGK 480 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G IV Q + + L+ AK+ Sbjct: 481 YAILSDILGDEDHLGDMDFKVTGTSKG-IVACQMDLKINGLKWEVLTQALDQAKEA 535 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 83/227 (36%), Gaps = 27/227 (11%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +I L+ K A+GS +VK GDT LL T + V + + A G +P Sbjct: 17 QIELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATGRIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++REA R I R++ RALR + + Q++I +I AD Sbjct: 77 ---GGFLRREA---RLSDYEVLISRLVDRALRPLFPENYHADTQVMIS--LISADKDI-- 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D L + + G ++ + + G +++ + + Sbjct: 127 ---------MPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATL 177 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + V + I V+G E S+ + A + I I Q Sbjct: 178 EF-IVAGSAQDIGMVEG--EANEISETEMVEAIAFAHEAIKKQIAAQ 221 >gi|149640866|ref|XP_001510386.1| PREDICTED: similar to polynucleotide phosphorylase-like protein [Ornithorhynchus anatinus] Length = 764 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 17/248 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R+IS + K GS L + G T +L T T + + + + Sbjct: 338 RCDGRDLTSLRDISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSMKSDLITSAVSG 397 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K V+ R+ G + +AL VV + Sbjct: 398 VKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAEKALIPVVPKDF--PFTMR 451 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + + K + + Sbjct: 452 VTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAIGLITKNNSEKEE--IEDYRL 509 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + + A +++++ Sbjct: 510 MTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPIKIVMEAIQQATVAKREILQI 568 Query: 234 QKDVISNE 241 IS Sbjct: 569 MNRTISKP 576 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 28/209 (13%) Query: 22 KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 ++A+G +V+ GDT ++ TA T + A G +P N ++RE Sbjct: 45 RFADGCAVVQLGDTSVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP---TNYLRREL 101 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVA 136 S + R+I R++R + QI+ C+++ DG AI GA A Sbjct: 102 GS---SDKEILTSRIIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNEPDVLAINGASAA 156 Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196 L G V A+ G++ G +++ E ++ ++ Sbjct: 157 LS-------------LSDIPWNGPVGAVRVGLINGECVINPTRREMASSALNLVVAGAPR 203 Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKD 225 +V ++ +AE Q F + + Sbjct: 204 SQVVMLEAAAENVL--QQDFSHAIKVGMK 230 >gi|322831218|ref|YP_004211245.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602] gi|321166419|gb|ADW72118.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602] Length = 707 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +++ + + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAMMPKPEDFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA +AL D +K VA I+ G++ G Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGESFIV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVIS 239 + IS Sbjct: 537 MEQAIS 542 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G +P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E T +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTADELKTSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T G ++ V+ AE S+D + Sbjct: 177 LVVAGTQ-GAVLMVESEAE--VLSEDQMLGAV 205 >gi|114705224|ref|ZP_01438132.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi HTCC2506] gi|114540009|gb|EAU43129.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi HTCC2506] Length = 711 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R+I + GS L G+T L ATL + G Sbjct: 317 RIDGRSLDTVRKIVSEVGILPRTHGSALFTRGETQALVVATLGTGEDEQFVDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + Sbjct: 377 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPAAEQFPYTLRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A + G +A D LK VA I+ G++ G Sbjct: 433 ITESNGSSSMATVCGTSLAFMDAGV-------------PLKRPVAGIAMGLIKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L+ AK ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEEG-ITSLQMDIKIQGITEEIMKVALDQAKGGRVHILGE 538 Query: 234 QKDVISN 240 + Sbjct: 539 MNKALGE 545 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 42/238 (17%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R ++L +++ A+G+ L +G+T ++ T + EK P +T Y + Sbjct: 14 RRLTLETGKIARQADGAVLATYGETVVMATV-VSEKQPK--AGFDFFPLTVNYQEKTFAA 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + R+I R +R + Q+++ V+Q D Sbjct: 71 GKIPGGFFKRE---GRPSEKETLTSRLIDRPIRPLFAEGYKNDTQVVLT--VLQHD---- 121 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D + + + G + G + G V+ + E Sbjct: 122 -------LENDPDVVAMVAASAALTLSGVPFMGPIGGARVGYINGEYKVNPNVDEMPESA 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229 +D T ++ +E S+D A++ LA+ + Sbjct: 175 LDLVVAGTKDAVLMV---ESEAHELSEDVMLGAVMEGHRSFQPVIDAIIKLAEVAAKE 229 >gi|260596206|ref|YP_003208777.1| polynucleotide phosphorylase/polyadenylase [Cronobacter turicensis z3032] gi|260215383|emb|CBA27411.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis z3032] Length = 711 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 318 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 378 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPAADRFPYTVRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 434 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENFVV 480 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITKEIMQVALNQAKGARLHILGV 539 Query: 234 QKDVIS 239 + I+ Sbjct: 540 MEQAIN 545 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G +P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R LR + + Q+I + Sbjct: 75 --GGFFRRE---GRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKASKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T+S ++ +E S+D + ++ I ++ L K+ Sbjct: 177 LVVAGTESAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEA 226 >gi|16329253|ref|NP_439981.1| polynucleotide phosphorylase/polyadenylase [Synechocystis sp. PCC 6803] gi|81670191|sp|P72659|PNP_SYNY3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|1651733|dbj|BAA16661.1| polyribonucleotide nucleotidyltransferase [Synechocystis sp. PCC 6803] Length = 718 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 28/234 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 R+I L A GS L++ GDT +L TAT +T +Y Sbjct: 13 RDIRLKMGTLAPQAGGSVLIQSGDTAVLVTAT----RAKGRDGIDFLPLTVDYEGRLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 R G ++RE GR ++ I R+I R LR + QI+ + + Sbjct: 69 GRIPGGFLRRE---GRPPEKATLISRLIDRPLRPLFPHWLRDELQIVATTLSMDEEVPPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+TGA VA+ KG +AA+ G++ I++ Y E D Sbjct: 126 VLAVTGASVAVILAQI-------------PFKGPMAAVRVGLVGDDFIINPTYREVHNGD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T +G IV V+ A + + ++ + + DLI Q++++++ Sbjct: 173 LDLVVAGTPAG-IVMVEAGANQ--LPEQDIIEAIDFGYEAVQDLINAQRELMTD 223 Score = 92.5 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 28/230 (12%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54 +R+ GR+ Q+R IS + GS L G T +L+ ATL + Sbjct: 323 VRVDGRKLEQVRPISCEVGFLPRRVHGSGLFNRGLTQVLSLATLGSPGDAQDLADDLHPE 382 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y P S G + R+ G + RA+ V+ + + Sbjct: 383 DEKRYLHHYNFPPYSVGEARPMRSPGRREIGHG----ALAERAIIPVLPPQEDFPYVVRV 438 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ +AL D +K V+ + G++ Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PIKKPVSGAAMGLIKEGDE 485 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 + D+ ED D+D TDSG I +Q + S + + Sbjct: 486 IRILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKIDGLSMEVVSKAI 534 >gi|262401655|ref|ZP_06078221.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586] gi|262352072|gb|EEZ01202.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586] Length = 709 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 74/234 (31%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + Q+I+ + D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 TD+ ++ +E +++ A + D Q+ + N + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHD--------QQQAVINAI 220 >gi|300770058|ref|ZP_07079937.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762534|gb|EFK59351.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 729 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 84/236 (35%), Gaps = 28/236 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +RL GR +R I A GS + G+T LT+ TL K + + + Sbjct: 318 IRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQMIDGAFINGY 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y STG R+ G + R+L+ V+ A I + Sbjct: 378 NKFILHYNFPAFSTGEVRPNRGPGRREVGHG----NLAMRSLKQVLPADAENPYTIRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D+++++G + A + +AL D + K V+ I+ G++ Sbjct: 434 DILESNGSSSMATVCAGTLALMDAGVKL-------------KAPVSGIAMGLITDEKTGK 480 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G IV Q + + L+ AK+ Sbjct: 481 YAILSDILGDEDHLGDMDFKVTGTSKG-IVACQMDLKINGLKWEVLTQALDQAKEA 535 Score = 79.4 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 80/228 (35%), Gaps = 29/228 (12%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +I L+ K A+GS +VK GDT LL T + V + + A G +P Sbjct: 17 QIELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATGRIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++REA R I R++ RALR + + Q++I +I AD Sbjct: 77 ---GGFLRREA---RLSDYEVLISRLVDRALRPLFPENYHADTQVMIS--LISADKDI-- 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D L + + G ++ + + G +++ + + Sbjct: 127 ---------MPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATL 177 Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + +VE E S+ + A + I I Q Sbjct: 178 EFVVAGSAQDIGMVE----GEANEISEAEMVEAIAFAHEAIKKQIAAQ 221 >gi|308050580|ref|YP_003914146.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM 9799] gi|307632770|gb|ADN77072.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM 9799] Length = 698 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R +S+ V GS L G+T L ATL + + + Sbjct: 314 RIDGRDTKMIRALSVLPGVLPRTHGSALFTRGETQALVAATLGTERDGQIIDELIGERTD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R +++V+ + + + + Sbjct: 374 RFMLHYNFPPFCVGETGFIGSPKRREIGHG----KLAKRGVQAVMPTAEEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ G +AL D +K VA I+ G++ + + Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDNFVV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +Q+ L A + ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITQEIMQIALKQAFEARVHILGV 535 Query: 234 QKDVI 238 + + Sbjct: 536 MDEAL 540 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T ++ V + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKNVQPGQDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I ++ Sbjct: 74 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPKGFMNEVQVIATVVSVEPAVSPDVV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + G G +++ E T +D Sbjct: 129 AMIGTSAALALSGI-------------PFNGPIGCARVGFRDGEYLLNPSVEELKTSKLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+S ++ +E S++ + +I+ + Sbjct: 176 LVVAGTESAVLMV---ESEAEVLSEEIMLGAVMFGHQAQQTVIQAINE 220 >gi|192288867|ref|YP_001989472.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris TIE-1] gi|226702683|sp|B3QAB0|PNP_RHOPT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|192282616|gb|ACE98996.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris TIE-1] Length = 722 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 89/241 (36%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I V GS L G+T L TL ++ G Sbjct: 316 RIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQALVVTTLGTGEDEQYVDSLSGTYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+ V+ I + + Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + A +++ L AKD ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 42/238 (17%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T +L T + E V + G + Sbjct: 14 RPLKLETGKVARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQEKAYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL KG + A G + +++ D + Sbjct: 128 VLAMVAASAAL-------------TLSGVPFKGPIGAARVGFINDEYVLNP--VLDEMAE 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229 V+ + V + S E S++ A+++LA+ + Sbjct: 173 TQLELVVAGTADAVLMVES-EAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKE 229 >gi|163757756|ref|ZP_02164845.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica DFL-43] gi|162285258|gb|EDQ35540.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica DFL-43] Length = 706 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R I + GS L G+T + ATL + TK Sbjct: 317 RIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGTKKA 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + +G G R ++ RA+ ++ + + + + Sbjct: 377 TFMLHYNFPPYSVGETGR----TGSPGRREIGHGKLAWRAINPMMPSAEQFPYTLRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGEDFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + +++ L+ A+ ++K + Sbjct: 484 LGDEDHLGDMDFKVAGTADG-ITALQMDIKIDGITEEIMKIALSQAEGGRLHILKEMGNA 542 Query: 238 ISN 240 ++ Sbjct: 543 LTE 545 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 80/237 (33%), Gaps = 35/237 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T +L T + + + + T G + Sbjct: 14 RPLILETGKVARQADGAVIATYGETVVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR R+I R LR + QIII V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLTSRLIDRPLRPLFPDGYKNDTQIIIT--VMQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 D L + + G +A G + G +++ E Sbjct: 126 P-------------DILALVAASAALTISGIPFMGPIAGARVGYINGEYVLNPHVDEMPE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 D+D T+ ++ +E ++D + I +IKL + Sbjct: 173 SDLDLVVAGTNDAVLMV---ESEAKELAEDVMLGAVMFGHKSFQPVIDAIIKLAEAA 226 >gi|304396352|ref|ZP_07378233.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB] gi|304355861|gb|EFM20227.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB] Length = 711 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQNLDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKAEDFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQEALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMMGASAALALSGL-------------PFNGPIGAARVGYINDQYVLNPTADELKQSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T + ++ +E S++ + Sbjct: 177 LVVAGTQNAVLMV---ESEAEILSEEQMLGAV 205 >gi|150016092|ref|YP_001308346.1| polynucleotide phosphorylase/polyadenylase [Clostridium beijerinckii NCIMB 8052] gi|187610256|sp|A6LSR0|PNP_CLOB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149902557|gb|ABR33390.1| Polyribonucleotide nucleotidyltransferase [Clostridium beijerinckii NCIMB 8052] Length = 701 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +Q+R + + G+ L G T ++T ATL E ++ I + Sbjct: 312 RPDGRAFDQIRPLGCEIGILPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIDEAQSK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ I + + Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + ++ + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLS-------EEAVLTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + FS + + A+ +I + Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLQGFSFNVVENAIRDARKARLTIIDKINEC 539 Query: 238 ISNE 241 IS Sbjct: 540 ISTP 543 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 31/236 (13%) Query: 12 REISLT---RRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64 RE+ + + A +GDT +LT E + + + ++ G Sbjct: 12 RELKVEFGKVGMLSNAA--TFTSYGDTVILTNVNASEQPREGIDFFPLSVEYEERLYAVG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G +KRE GR ++ R + R LR + Q++ ++ D Sbjct: 70 KIP---GGFIKRE---GRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVTTVVSVEKDNL 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI A +AL S AA+ G++ G + + D Sbjct: 124 PEILAINAASLALC-------------LSSIPYTIPAAAVQVGIIDGKFVTNPDTQGREK 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T ++ ++ + +D + D +I Q++ ++ Sbjct: 171 SILHLTVCATKE-RVMMIEAGGQEIP--EDTMIDAIKYGFDECQKIIAFQEEAVAK 223 >gi|37680881|ref|NP_935490.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus YJ016] gi|37199630|dbj|BAC95461.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus YJ016] Length = 725 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 333 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 392 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y P G + R+ G ++ R + +V+ + + + Sbjct: 393 YFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSIDEFPYTVRVVSE 448 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 449 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 495 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ LN A+ ++ + Sbjct: 496 LSDILGDEDHLGDMDFKVAGTSTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 554 Query: 234 QKDVISN 240 IS Sbjct: 555 MDQAISG 561 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E VP + + T G +P Sbjct: 34 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPLTVNYQERTYAAGKIP- 92 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + Q+I + D Sbjct: 93 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVSVNPDVQPDIP 147 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E + +D Sbjct: 148 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELNASRLD 194 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+S ++ +E +++ + + D+ +IK + Sbjct: 195 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHDQQQAVIKAINE 239 >gi|163867506|ref|YP_001608705.1| polynucleotide phosphorylase/polyadenylase [Bartonella tribocorum CIP 105476] gi|189037300|sp|A9IMR9|PNP_BART1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|161017152|emb|CAK00710.1| polyribonucleotide nucleotidyltransferase [Bartonella tribocorum CIP 105476] Length = 731 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R I + GS L G+T + ATL + G Sbjct: 317 RIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDALTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ I + Sbjct: 377 TFLLHYNFPPFSVGETGR----LGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ L AKD ++ Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIDGITEEIMKIALEQAKDGRIHILNEMAKA 542 Query: 238 ISN 240 +++ Sbjct: 543 LTS 545 Score = 82.1 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ + +G+T +L T + + + + + G + Sbjct: 14 RPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYAVGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G +KRE+ R + R+I R +R + Q+I+ VIQ D Sbjct: 74 P---GGYLKRES---RPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVS--VIQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ + AL G +A G G +++ E Sbjct: 126 PDILAMIASSAAL-------------TLSGVPFMGPIAGARVGYCNGQYVLNPHMDEMPE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T+S ++ +E +D + + ++ Sbjct: 173 SKLDLVVAGTESAVLMV---ESEAQELPEDIMLGAVMFGHKGLQPVLDA 218 >gi|118443480|ref|YP_878203.1| polynucleotide phosphorylase/polyadenylase [Clostridium novyi NT] gi|187610259|sp|A0Q0Q1|PNP_CLONN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|118133936|gb|ABK60980.1| polyribonucleotide nucleotidyltransferase [Clostridium novyi NT] Length = 705 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 16/236 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +++R +S + GS L G T +++ ATL E +V I Sbjct: 312 RPDGRYFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSISEGQVLDGIEEETSK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G + +A+ ++ I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHG----ALAEKAIEPLIPSEQEFPYAIRVVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D M+ + + V + + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPMKRPAAGIAMGLVTSEDLE-------KEEILTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ED D+D T+ G I +Q + S D + A+ ++++ Sbjct: 481 QGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIKGLSNDCIKKAITNARKARLTILEV 535 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 26/215 (12%) Query: 30 VKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85 + +GDT +L +E + + + ++ G +P G +KRE GR Sbjct: 31 ISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQERLYAVGKIP---GGFIKRE---GRPSD 84 Query: 86 RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145 ++ R I R LR + Q++ + D A+ GA +AL Sbjct: 85 KAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPNILAMNGASLALC------- 137 Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205 S V +S G++ G I++ + +D T ++ ++ Sbjct: 138 ------LSSIPFTIPVGTVSVGLIDGEFIINPTSKQREESILDLTVCATKD-RVMMIEAG 190 Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 E +D + + + + Q+ V+ Sbjct: 191 GEEIP--EDVMYDAIMFGFEECKKIADFQQKVMEQ 223 >gi|116249886|ref|YP_765724.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum bv. viciae 3841] gi|123385010|sp|Q1MN44|PNP_RHIL3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115254534|emb|CAK05608.1| putative Polynribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Rhizobium leguminosarum bv. viciae 3841] Length = 712 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I + GS L G+T + ATL ++ G Sbjct: 316 RIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTPEQFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + +++ L A+ ++ Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSKA 541 Query: 238 ISN 240 I+ Sbjct: 542 ITE 544 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 31/222 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + Q+++ VIQ D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ AL G V G + G +++ E Sbjct: 126 PDVLSMVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +D T ++ +E ++D + Sbjct: 173 SSLDLVVAGTYDAVLMV---ESEAKELNEDVMLGAVMFGHKG 211 >gi|168187902|ref|ZP_02622537.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C str. Eklund] gi|169294241|gb|EDS76374.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C str. Eklund] Length = 705 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 16/236 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +++R +S + GS L G T +++ ATL E +V I Sbjct: 312 RPDGRSFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQVLDGIEEETLK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G + +A+ ++ I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHG----ALAEKAIEPLIPSEQEFPYAIRVVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + V + + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLVTSEDLE-------KEEILTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ED D+D T+ G I +Q + S D + A+ ++++ Sbjct: 481 QGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIKGLSNDCIKKAITNARKARLTILEV 535 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 26/215 (12%) Query: 30 VKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85 + +GDT +L +E + + + ++ G +P G +KRE GR Sbjct: 31 ISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQERLYAVGKIP---GGFIKRE---GRPSD 84 Query: 86 RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145 ++ R I R LR + Q++ + D A+ GA +AL Sbjct: 85 KAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPNILAMNGASLALC------- 137 Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205 S V +S G++ G +++ + +D T ++ ++ Sbjct: 138 ------LSSIPFTTPVGTVSVGLVDGEFVINPTSKQREESILDLTVCATKD-RVMMIEAG 190 Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 E +D + + + + Q+ V+ Sbjct: 191 GEEIP--EDVMYDAIMFGFEECKKIANFQQKVMEQ 223 >gi|127513750|ref|YP_001094947.1| polynucleotide phosphorylase/polyadenylase [Shewanella loihica PV-4] gi|187611300|sp|A3QGU0|PNP_SHELP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|126639045|gb|ABO24688.1| Polyribonucleotide nucleotidyltransferase [Shewanella loihica PV-4] Length = 700 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR+ + +R +S+ V GS L G+T L T TL + ++ G T+ Sbjct: 314 RIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGEQTS 373 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + I + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGIHAVMPTAEEFPYSIRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMQIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 IS Sbjct: 536 MDQAISGH 543 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + Q+II + + Sbjct: 74 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + + G + G I++ + ++ Sbjct: 129 SMIGTSAALSISGI-------------PFNGPLGSARVGYVDGEYILNPTVSQLENSQLE 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + T++ ++ +E ++ + ++ +I+ K+ Sbjct: 176 LSVAGTENAVLMV---ESEADALPEEVMLGAVVYGHEQQQVVIQAIKE 220 >gi|27365068|ref|NP_760596.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus CMCP6] gi|320155451|ref|YP_004187830.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus MO6-24/O] gi|81448563|sp|Q8DBU9|PNP_VIBVU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611443|sp|Q7MI20|PNP_VIBVY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|27361214|gb|AAO10123.1| Polyribonucleotide nucleotidyltransferase [Vibrio vulnificus CMCP6] gi|319930763|gb|ADV85627.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus MO6-24/O] Length = 708 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 YFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSIDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 IS Sbjct: 538 MDQAISG 544 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E VP + + T G +P Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVSVNPDVQPDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E + +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELNASRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+S ++ +E +++ + + D+ +IK + Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222 >gi|126736200|ref|ZP_01751943.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2] gi|126714366|gb|EBA11234.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2] Length = 710 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 27/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R I + GS L G+T L TL + + G Sbjct: 318 RIDGRALDTIRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALTGMYKS 377 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RAL++V+ + I + + Sbjct: 378 NFMLHYNFPPYSVGEVGRVSGPGRREIGHG----KLAWRALQAVLPAATDFPYTIRLVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLVMEDDGEYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AK ++ Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPEIMSKALAQAKAGRLHILG 539 Query: 233 LQKDVI 238 + Sbjct: 540 EMGKAL 545 Score = 78.2 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 81/231 (35%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L V++ A+GS + G+T ++ T K +T Y + Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFARKQKP---GQDFFPLTVHYQEKYYAAGK 72 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 73 VPGGFFKREA---RPTEKETLTSRLIDRPIRPLFVPGF--KNEVLVMCTVLSHDMVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182 A+ A AL +G +AA G G I++ + + Sbjct: 128 MVAMIAASAALTISGA-------------PFRGPIAACRVGFEDGEYILNPEIDDMHNLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E ++D + A ++I +I L Sbjct: 175 LNPEQRLDLVVAGTKDAVMMVES-EAYELTEDEMLGAVTFAHEQIQPVIDL 224 >gi|229815242|ref|ZP_04445578.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM 13280] gi|229809252|gb|EEP45018.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM 13280] Length = 714 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 92/251 (36%), Gaps = 38/251 (15%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR ++R I + GS L + G T +L+ +L + N T Sbjct: 319 RVDGRTAAEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLG------MLNEGQRLDTI 372 Query: 62 E----------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 E Y P TG + R+ G + RAL V+ Sbjct: 373 EPVDGKRYMHHYNFPPYCTGETGRMGTPKRREIGHG----NLAERALIPVLPDENEFPYA 428 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 I + +V++++G + A+ G+ +AL D +K V+ I+ G++ Sbjct: 429 IRVVSEVMESNGSSSMASTCGSCLALMD-------------GGVPIKRPVSGIAMGLIQE 475 Query: 172 Y----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + D+ ED D+D T+ G I +Q + + D L AK+ Sbjct: 476 EGKTVVLSDIQGLEDFLGDMDFKVTGTEKG-ITALQMDNKATGLTFDILRTALEQAKEGR 534 Query: 228 ADLIKLQKDVI 238 A ++ +V+ Sbjct: 535 AYILDKMLEVV 545 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 80/231 (34%), Gaps = 28/231 (12%) Query: 16 LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTG 71 ++K A G+ LVK GD+ +LTT + ++ + G +P G Sbjct: 17 FEVGELAKQATGAALVKQGDSTVLTTVVVSKERKNYDFFPLTVDFNEKMYAAGRIP---G 73 Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131 +KRE GR ++ RMI R +R Q++ V + Sbjct: 74 GYLKRE---GRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNPVDVICVM 130 Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDA 189 GA +A+ +G +A + G G IV+ Y E D+D Sbjct: 131 GASLAM-------------TIGGVPFEGPLACVRIGRDKETGEFIVNPTYEERENSDLDL 177 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ AE S++ A + ++ I Q + + Sbjct: 178 ELAGTRDF-ISMVEAGAEE--VSEEDMLAAMQFGQEAIGAFCDAQLEFVEE 225 >gi|260806963|ref|XP_002598353.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae] gi|229283625|gb|EEN54365.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae] Length = 444 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 92/260 (35%), Gaps = 30/260 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GRQ R + ++ + + G C+V GDT +L + + + P R G I Sbjct: 23 RIDGRQTYDYRRLKVSFGMER---GCCIVDLGDTKVLAQVSGKIEEPKKNR-PTEGSIII 78 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113 + P ++ GR E+ R++ R +R VD +L I Sbjct: 79 NLELSPMASPA-----FEPGRPTESGIEMNRILERNIRDSRAVDTESLCIVAGEKVWSIR 133 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163 D V+ +G AA A AL + + ++ + + Sbjct: 134 ADVHVLNDEGNIMDAASIAAITALSHFRRPDVSVMGEEVTVHSPEDRDPVPLSVHHMPVC 193 Query: 164 ISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 ++ + +VD + E+ +D M I + S ++ Sbjct: 194 VTFAFFDQGEFLLVDPNRSEERVMDGRMVVGMNMHREICTLMMSG-GMLLVKEQVLRCSQ 252 Query: 222 LAKDRIADLIKLQKDVISNE 241 +A ++A++I+L + + + Sbjct: 253 IATVKVAEIIELIQRALDKD 272 >gi|730350|sp|P41121|PNP_PHOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=CAP87K; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|561531|emb|CAA53671.1| polynucleotide phosphorylase [Photorhabdus luminescens] Length = 709 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 100/248 (40%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + I + G T Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSCEG-ISALQMDIKIEGITREIMQVALNQAKGARLHILSV 536 Query: 234 QKDVISNE 241 + I+ Sbjct: 537 MEQAITTP 544 Score = 68.2 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 +++ + + A + +V DT + T ++KV +T Y + G Sbjct: 16 VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKV---KAGQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR G + R+I R LR + L +I+ + Sbjct: 73 IPGSFFRRE---GRPGEGETLVARLIDRPLRPLFPEGFLNEVRIVATVVSVNPQINPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALALSGI-------------PFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E +++ + Sbjct: 177 LVVSGT-AGAVLMVE--SEADLLTEEQMLGAV 205 >gi|255531752|ref|YP_003092124.1| polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM 2366] gi|255344736|gb|ACU04062.1| Polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM 2366] Length = 716 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 89/249 (35%), Gaps = 28/249 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +RL GR +R I A GS + G+T LTT TL K + + + Sbjct: 316 IRLDGRDVRTVRPIWSEVGYLPAAHGSAVFTRGETQSLTTVTLGSKDDEQMIDGAFINGY 375 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y STG R+ G + R+L+ V+ I I Sbjct: 376 NKFLLHYNFPGFSTGEVRPNRGAGRREIGHG----NLAMRSLKKVLPGLEENPYTIRIVS 431 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D+++++G + A + +AL D +K V+ I+ G++ Sbjct: 432 DILESNGSSSMATVCAGTLALMDAGVK-------------IKAPVSGIAMGLITDEKSGK 478 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G IV Q + + LN AK+ + Sbjct: 479 YAILSDILGDEDHLGDMDFKVTGTEKG-IVACQMDLKINGLKWEVLTNALNQAKEARLHI 537 Query: 231 IKLQKDVIS 239 + K I+ Sbjct: 538 LNEMKKTIA 546 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R I + K A+G+ +VK GDT LL T + V + + A G + Sbjct: 14 RTIEIETGKLAKQADGAVVVKMGDTMLLATVVSTVGAKAGVDFLPLSVDYQEKYAAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++REA R I R++ RALR + Q++I +I +D Sbjct: 74 P---GGFLRREA---RLSDYEVLISRLVDRALRPMFPEDYHSDTQVMIS--LISSDKNI- 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + DCL + + G ++ + + G +++ + D Sbjct: 125 ----------MPDCLAGLAASAAIAVSDIPFNGPISEVRVARIDGKFVINPYVTDLERAD 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ T+ IV V+G E S+ + A I ++ QK+ Sbjct: 175 IEFLVAGTEKD-IVMVEG--ECNEISETEMVEAIEFAHKAIVIQVQAQKE 221 >gi|162147166|ref|YP_001601627.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter diazotrophicus PAl 5] gi|209544221|ref|YP_002276450.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter diazotrophicus PAl 5] gi|187610270|sp|A9HF35|PNP_GLUDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|161785743|emb|CAP55314.1| putative polyribonucleotide nucleotidyltransferase [Gluconacetobacter diazotrophicus PAl 5] gi|209531898|gb|ACI51835.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter diazotrophicus PAl 5] Length = 712 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + A GS L G+T L ATL +E+V + Sbjct: 314 RIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTAQDEQVIDALEGEYRT 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R GR R ++ RA+ ++ + I + Sbjct: 374 NFMLHYNFPPYSVGE-CGRMGSPGR---REIGHGKLAWRAIHPLLPGKDTFPYTMRIVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYPI 174 + +++G + A + G +AL D LK VA I+ G++ G+ + Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGV-------------PLKRPVAGIAMGLIKEDRGFAV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+SG I +Q + + + + L A+D ++ Sbjct: 477 LSDILGDEDHLGDMDFKVAGTESG-ITALQMDIKITSITPEIMKIALGQARDGRLHILGE 535 Query: 234 QKDVISN 240 ++ Sbjct: 536 MSKALTE 542 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 75/227 (33%), Gaps = 27/227 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + L +++ A+G+ +V +GDT +L TA V +T Y + Sbjct: 14 RPLVLETGKIARQADGAVVVTYGDTVVLCTAVGARSVKP---GQDFFPLTVNYQEKAFAA 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR R+I R +R + + Q++ + Sbjct: 71 GKIPGGFFKRE---GRPSEIEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSHDLENDPA 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G AL G VAA G G I++ E Sbjct: 128 IAALIGCSAALTLSGI-------------PFFGPVAACRVGYADGAYILNPTLPEMKESA 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T G ++ +E + S+D + + +I Sbjct: 175 LDLVVAGTSEGVLMV---ESEASELSEDVMLGAVTFGHEAFQAVIDA 218 >gi|237823993|pdb|3H1C|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237823995|pdb|3H1C|B Chain B, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237823997|pdb|3H1C|C Chain C, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237823999|pdb|3H1C|G Chain G, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824001|pdb|3H1C|I Chain I, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824003|pdb|3H1C|K Chain K, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824005|pdb|3H1C|M Chain M, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824007|pdb|3H1C|O Chain O, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824009|pdb|3H1C|R Chain R, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824011|pdb|3H1C|T Chain T, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824013|pdb|3H1C|V Chain V, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate gi|237824015|pdb|3H1C|X Chain X, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate Length = 549 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|241207064|ref|YP_002978160.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860954|gb|ACS58621.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 712 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I + GS L G+T + ATL ++ G Sbjct: 316 RIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTPEQFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + +++ L A+ ++ Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSKA 541 Query: 238 ISN 240 I+ Sbjct: 542 ITE 544 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 31/222 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + Q+++ VIQ D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ AL G V G + G +++ E Sbjct: 126 PDVLSMVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 +D T ++ +E ++D + Sbjct: 173 SSLDLVVAGTYDAVLMV---ESEAKELNEDIMLGAVMFGHKG 211 >gi|319406539|emb|CBI80181.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. 1-1C] Length = 733 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R I + GS L G+T L ATL ++ G Sbjct: 317 RIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ I + Sbjct: 377 TFLLHYNFPPFSVGEIGR----IGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A + G +AL D L VA I+ G++ G Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PLANPVAGIAMGLIKEGEQFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ L AKD ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNE 538 Query: 234 QKDVIS 239 ++ Sbjct: 539 MAKALA 544 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 35/233 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + G + Sbjct: 14 RPLILETGKIARQADGAILATYGETVVLATVVSAKIPKPDQNFFPLTVNYQEKNYAVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G +KRE R I R+I R +R + Q+I+ VIQ D Sbjct: 74 P---GGYLKRE---NRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVS--VIQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI + AL G +AA G G I++ + E Sbjct: 126 PDILAIIASSAALTLSGI-------------PFMGPIAAARIGYCNGQYILNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233 +D T++ ++ +E +D + + I +IKL Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAHELPEDVMLDAVMFGQKSFQPVINAIIKL 222 >gi|217035383|pdb|3CDJ|A Chain A, Crystal Structure Of The E. Coli KhS1 DOMAIN TRUNCATED Pnpase Length = 559 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 321 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 380 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 381 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 436 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 482 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 483 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 541 Query: 233 LQKDVIS 239 + + I+ Sbjct: 542 VMEQAIN 548 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 22 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 78 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 79 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 135 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 136 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 182 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 183 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 232 >gi|28899226|ref|NP_798831.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus RIMD 2210633] gi|153838303|ref|ZP_01990970.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AQ3810] gi|260362211|ref|ZP_05775195.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus K5030] gi|260879079|ref|ZP_05891434.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AN-5034] gi|260897750|ref|ZP_05906246.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus Peru-466] gi|260900806|ref|ZP_05909201.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AQ4037] gi|81727008|sp|Q87M06|PNP_VIBPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|28807450|dbj|BAC60715.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|149748292|gb|EDM59151.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AQ3810] gi|308088979|gb|EFO38674.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus Peru-466] gi|308089536|gb|EFO39231.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AN-5034] gi|308108195|gb|EFO45735.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus AQ4037] gi|308111467|gb|EFO49007.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus K5030] Length = 711 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSTG-VTALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + ++ Sbjct: 538 MDEALAG 544 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + +V DT + + +++ + +T Y + G Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEA---VAGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E + +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSQTELNASRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T+S ++ +E +++ A + D Q+ V+ N + Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVFGHD--------QQQVVINAI 220 >gi|239781891|pdb|3GCM|A Chain A, Crystal Structure Of E. Coli Polynucleotide Phosphorylase Bound To Rna And Rnase E gi|239781893|pdb|3GCM|B Chain B, Crystal Structure Of E. Coli Polynucleotide Phosphorylase Bound To Rna And Rnase E gi|239781895|pdb|3GCM|C Chain C, Crystal Structure Of E. Coli Polynucleotide Phosphorylase Bound To Rna And Rnase E gi|239781908|pdb|3GLL|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core gi|239781910|pdb|3GME|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase In Complex With Rnase E And Manganese Length = 549 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 71.7 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|156935691|ref|YP_001439607.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii ATCC BAA-894] gi|156533945|gb|ABU78771.1| hypothetical protein ESA_03557 [Cronobacter sakazakii ATCC BAA-894] Length = 690 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 297 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 356 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 357 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPAADRFPYTVRVVSE 412 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 413 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENFVV 459 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 460 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITKEIMQVALNQAKGARLHILGV 518 Query: 234 QKDVIS 239 + I+ Sbjct: 519 MEQAIN 524 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 72/224 (32%), Gaps = 30/224 (13%) Query: 22 KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77 + A + +V DT + T + + + T G +P G +RE Sbjct: 4 RQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIP---GGFFRRE 60 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 GR I R+I R LR + + Q+I + A+ GA AL Sbjct: 61 ---GRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G + A G + +++ E + +D T+S Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESA 164 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 ++ +E S+D + ++ I ++ L K+ Sbjct: 165 VLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEA 205 >gi|332291156|ref|YP_004429765.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus 4H-3-7-5] gi|332169242|gb|AEE18497.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus 4H-3-7-5] Length = 741 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 82/244 (33%), Gaps = 20/244 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56 +RL GR+ ++R I GS + G+T L T TL + Sbjct: 317 LRLDGRKTTEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTSRDANKIDMPSHEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + R L+ ++ + + Sbjct: 377 ENFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRGLKGMIPAD--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 +V++++G + A + +A+ D M + + IS G Y ++ Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMG--------LISDGASGKYAVLS 482 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T G I Q + S + L A+ ++ Sbjct: 483 DILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALQQARAGRLHILDKIT 541 Query: 236 DVIS 239 + I+ Sbjct: 542 ETIA 545 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 74/227 (32%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REIS+ K A GS +V+ G LL T + + + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEAKDLDFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHSETQVMIQLMSHDDD----- 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D + + + + ++ G + G I++ + D+ Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLEESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + + ++ V+G E S++ + A D I Q Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMADAIKFAHDHIKVQCAAQ 220 >gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp. lyrata] gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp. lyrata] Length = 242 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 27/211 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R ++ +R + GS GDT +L + N + Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEV 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + +G+ G +E + ++ R ++S+ L+ + + V+ Sbjct: 65 IWK-------------PKTGQIGKVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHD 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG AI A AL D M+ + VA C GY ++D + E Sbjct: 112 DGSLLPCAINAACAALVDAGIPMKHLA------------VAICCCLADNGYLVLDPNKLE 159 Query: 182 DSTIDVDANFVMTDSGHIVEVQGS--AERAT 210 + + A V ++ V +GS AE Sbjct: 160 EKKMTAFAYLVFPNTTLSVLPEGSSVAEGEP 190 >gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group] Length = 238 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 71/198 (35%), Gaps = 27/198 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R S TR A GS GDT +L + N + I Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + ++G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 65 VWK-------------PMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180 DG AI AL LK AI CG+L G I+D + Sbjct: 112 DGSLLPCAINACCAALVFAGI-------------PLKHLAVAIGCGVLEDGEVILDTNKA 158 Query: 181 EDSTIDVDANFVMTDSGH 198 E+ + A+ V +S Sbjct: 159 EEQQLKSFAHLVFPNSRK 176 >gi|149924682|ref|ZP_01913032.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica SIR-1] gi|149814439|gb|EDM74030.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica SIR-1] Length = 698 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R + + + GS L + G+T +TT TL + +T G + Sbjct: 308 RVDGRGLTDIRALHIEVHPFERPHGSALFQRGETQAITTTTLGTERDAQRLDTIRGDVNN 367 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G S R+ G + RAL V+ + + + D Sbjct: 368 TFLLHYNFPPYCVGEARPMRGTSRREQGHG----ALAHRALTPVMPDTESFPYTLRVVSD 423 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++G + AA+ G ++L D +K VA I+ G++ Sbjct: 424 TTESNGSSSMAAVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIQEGDKIAV 470 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + ++D L A+ +++ Sbjct: 471 LSDILGDEDHLGDMDFKCCGTKDG-ITALQMDIKIHGLTRDILETALEQARAGRLHILEA 529 Query: 234 QKDVISNE 241 + + Sbjct: 530 MLEKLPEP 537 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 76/228 (33%), Gaps = 31/228 (13%) Query: 13 EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRS 69 EI + ++ G+T +L AT+ + +P + A G +P Sbjct: 14 EIGFETGRIAKQANTVIMTLGETAVLVAATMSREPKDLPFMPLTVEFRSANAAAGKIP-- 71 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRT 127 G KRE GR + R+ R +R + QI+ V+ D Sbjct: 72 -GGYFKRE---GRPTVEEILVCRLTDRPIRPLFPKGYRYDTQIV--SQVLSNDLQNEPDV 125 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA AL G VA I + G + + D Sbjct: 126 LAMTGASAAL-------------MISPAPWAGPVAGIRVARVDGELVAFPTF--DQIQQA 170 Query: 188 DAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D N V IV V+ AE S+ L AK++ LI+ Q Sbjct: 171 DLNLIVSCSRDAIVMVEAGAEG--ISESDMIDALMFAKEQSLPLIEAQ 216 >gi|187611310|sp|Q31W43|PNP_SHIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|320186653|gb|EFW61377.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri CDC 796-83] Length = 711 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R++ +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRSVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|328474238|gb|EGF45043.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus 10329] Length = 711 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSTG-VTALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + ++ Sbjct: 538 MDEALAG 544 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + +V DT + + +++ + +T Y + G Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEA---VAGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E + +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSQTELNASRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T+S ++ +E +++ A + D Q+ V+ N + Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVFGHD--------QQQVVINAI 220 >gi|261212242|ref|ZP_05926528.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341] gi|260838850|gb|EEX65501.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341] Length = 709 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 74/234 (31%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + Q+I+ + D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 TD+ ++ +E +++ A + D Q+ + N + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHD--------QQQAVINAI 220 >gi|311747141|ref|ZP_07720926.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1] gi|126578849|gb|EAZ83013.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1] Length = 712 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 16/242 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR+ N++R I A GS + G+T LTT TL K+ + + + + Sbjct: 319 RLDGRKLNEVRPIWSVVDYLPSAHGSAVFTRGETQSLTTCTLGTKMDEMMVDGATISGYN 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y STG R+ G + RAL+ V+ + I I D Sbjct: 379 KFYLHYNFPGFSTGEVKPNRGPGRREVGHG----NLAMRALKKVLPPAEENPYTIRIVSD 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A + +A+ D ++ + G ++ + G + D+ Sbjct: 435 ILESNGSSSMATVCAGSLAMMDAGIQIKSAVTGIAM-----GMISDANTGKYS--ILSDI 487 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I Q + L AK+ ++ Sbjct: 488 LGDEDHLGDMDFKVTGTSQG-ITACQMDLKVEGLDYSVLKEALLQAKEGRLHILDEITKT 546 Query: 238 IS 239 ++ Sbjct: 547 LA 548 Score = 75.9 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 76/230 (33%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 REI + K A+GS +VK G LL T E V + + A G + Sbjct: 16 REIIIETGALAKQADGSVVVKMGKAMLLATVVSKKEAGEGVDFLPMSVDYQEKFASTGKI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR I R++ RA+R + QI I Sbjct: 76 P---GGFLKRE---GRLSDYEILISRIVDRAIRPIFPDDYHADTQIAITL---------- 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++G L D L + + G ++ + + G ++ E Sbjct: 120 ---VSGDDEVLPDALAGLAASAALAVSDIPFNGPISEVRVAKIDGKLKINPTPTELEKAS 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 F++ S + + E ++ + A + I + Q + Sbjct: 177 --LEFIVAGSLDFILMV-EGEADEIQEEEMLEAMQFAHEEIKRHCQAQIE 223 >gi|149375751|ref|ZP_01893519.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Marinobacter algicola DG893] gi|149359876|gb|EDM48332.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Marinobacter algicola DG893] Length = 714 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 88/246 (35%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T + T TL M I + G Sbjct: 325 RIDGRDNKTVRPIEVEVGVLPSTHGSALFTRGETQAIVTTTLGTARDMQIIDALEGERKD 384 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ I + Sbjct: 385 PFLFHYNFPPYSVGEAGRVGTPGRREVGHG----RLAKRGVAAVMPTMEEFPYTIRAVSE 440 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 441 ITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGDQFAV 487 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + + L+ A ++ Sbjct: 488 LTDILGDEDHLGDMDFKVAGTSDG-ITALQMDIKIQGITDEIMEIALDQANAARLHILGE 546 Query: 234 QKDVIS 239 VIS Sbjct: 547 MAKVIS 552 Score = 58.6 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 28/229 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 +++ +++ A GS LV D +L T + P + + T G +P Sbjct: 24 VTIETGRIARQATGSVLVTVDDISVLGTVVAAKEAKPGQPFFPLTVNYFEKTYAVGKIP- 82 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + + Q+I T Sbjct: 83 --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNETQVI-------------TT 124 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187 ++ + D + + G + A ++ + E T + Sbjct: 125 VMSSSKNQDPDIAAMLAASAALSISGIPFDGPIGASRVAYTNERGYFLNPTFEELETSLL 184 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D T+ ++ +E ++D + + + K+ Sbjct: 185 DMVVAGTEDAVLMV---ESEAKGLTEDQMLGAVLFGHQEMQTAVTAIKE 230 >gi|148244575|ref|YP_001219269.1| polynucleotide phosphorylase/polyadenylase [Candidatus Vesicomyosocius okutanii HA] gi|187611332|sp|A5CWW8|PNP_VESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146326402|dbj|BAF61545.1| polyribonucleotide nucleotidyltransferase [Candidatus Vesicomyosocius okutanii HA] Length = 695 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 91/247 (36%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------K 55 R+ GR +RE+ + + K GS L G+T L TL K + + Sbjct: 315 RIDGRNNETVRELKIETGILKNTHGSALFTRGETQALVVTTLGPKSDAQLIEKLESPERQ 374 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + Y P G + + R+ G + R + + + + + Sbjct: 375 NNYFLLHYNFPPYCVGETGRLATIKRREIGHGH----LARRGITACLPSIEEFPYTVRVV 430 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++ +++G + A++ G+ ++L D +K +A I+ G++ Sbjct: 431 SEITESNGSSSMASVCGSSLSLMDAGV-------------PIKAPIAGIAMGLVKENDRF 477 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + +Q + + + + L AK+ +++ Sbjct: 478 TVLTDILGDEDHLGDMDFKVAGTSRG-VNALQMDIKIQSITHEIMEIALKQAKEARLNIL 536 Query: 232 KLQKDVI 238 VI Sbjct: 537 GQMNQVI 543 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 27/217 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ L DT +L T + + + T G +P Sbjct: 15 VTLETGRIARQAHGAVLASMDDTQVLVTVVSSKETRPGQDFFPLSVDYIEKTYSTGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +KREA R + R+I R +R + + Q++I ++ Sbjct: 74 --GSFLKREA---RPSEKETLTSRLIDRTIRPLFPNGFMNEIQVLITVVSANSEVNPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL + G G I++ Y E + D+D Sbjct: 129 SMLGVSAALS-------------ISGVPFSRPIGGSRVGYSNGEYILNPTYIELTNSDLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 TD ++ +E S++ + A + Sbjct: 176 MVVAGTDEAVLMV---ESEANELSEEIMLGAVVYAHE 209 >gi|258624688|ref|ZP_05719622.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603] gi|258582975|gb|EEW07790.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603] Length = 709 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 TD+ ++ +E +++ A + D Q+ + N + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHD--------QQQAVINAI 220 >gi|207742728|ref|YP_002259120.1| n terminus of a polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum IPO1609] gi|206594122|emb|CAQ61049.1| probable n terminus of a polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum IPO1609] Length = 481 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 8/167 (4%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ ++ Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164 + +++G + A++ G +AL D ++ + +L+G+ A+ Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV 477 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ + +++ A G+ L+ DT +L T + + + T G +P Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R LR + Q+++ V+ Sbjct: 75 ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVV--HVL-------- 118 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I A D + + G V A G G +++ + + + D+ Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236 D T+ ++ +E S++ + + I + L ++ Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225 >gi|331269622|ref|YP_004396114.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum BKT015925] gi|329126172|gb|AEB76117.1| Polyribonucleotide nucleotidyltransferase [Clostridium botulinum BKT015925] Length = 706 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 16/236 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +++R +S + GS L G T +++ ATL E +V I Sbjct: 312 RPDGRNFDEIRPLSAETSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQVLDGIDEETSK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G + R+ G + +A+ ++ I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHG----ALAEKAIEPLIPSEQEFPYAIRVVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + V ++ + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSEDLS-------KEEILTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ED D+D T+ G I +Q + S D ++ A+ ++K+ Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITAIQVDTKIEGLSNDCIKKAISDARTARLTILKV 535 Score = 68.6 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 77/234 (32%), Gaps = 27/234 (11%) Query: 12 REISLTRRVSKYAEGSCL-VKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ L + +GDT +L +E + + + ++ G + Sbjct: 12 RKLKGEFGKLGMLSDCALNISYGDTVVLINVNASPAPKEGIDFFPLSIEYQERLYAVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR R+ R I R LR + Q++ + D Sbjct: 72 P---GGFIKRE---GRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPN 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +AL S V +S G++ G I + + Sbjct: 126 ILAMNGASLALC-------------LSSIPFTKPVGTVSVGLIDGKFIANPTSKQREESI 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T ++ ++ E +D + + + + Q+ V+ Sbjct: 173 LDLTVCATKE-RVMMIEAGGEEIP--EDVMYDAIMFGFEECKKIADFQEKVMEQ 223 >gi|326436033|gb|EGD81603.1| hypothetical protein PTSG_02318 [Salpingoeca sp. ATCC 50818] Length = 221 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 6/147 (4%) Query: 3 LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62 G + Q R + V A+GS + G+T ++ + + + Sbjct: 31 ADGAKA-QPRSVFAEVGVVSQAKGSAFFEIGNTKVVAACYGPLSTSRRQGFQETCILDCD 89 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122 P S + +Q +E+ +++ +L+ V +S I + V+Q D Sbjct: 90 VKFSPFSGVKHQQ-----TKQTALERELSQLLESSLKPCVCVSKYPKSVIQVYATVLQDD 144 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSN 149 G +A I A +AL + M D Sbjct: 145 GAAFSAVINAASMALANAGIEMFDLLA 171 >gi|262163939|ref|ZP_06031678.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223] gi|262172277|ref|ZP_06039955.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451] gi|261893353|gb|EEY39339.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451] gi|262027467|gb|EEY46133.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223] Length = 709 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 TD+ ++ +E +++ A + D Q+ + N + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHD--------QQQAVINAI 220 >gi|182417579|ref|ZP_02948904.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum 5521] gi|237668128|ref|ZP_04528112.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378592|gb|EDT76120.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum 5521] gi|237656476|gb|EEP54032.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 701 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 86/239 (35%), Gaps = 16/239 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +++R + + G+ L G T ++T ATL E ++ I T+ Sbjct: 312 RPDGRAFDEVRPLGCEVGILPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIDETQSK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ I + + Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + ++ I D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLS-------QEQVITDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ED D+D T G I +Q + FS + + A+ +I + Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLQGFSFNVVENAIRDARKARLKIIDKINE 538 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 81/238 (34%), Gaps = 35/238 (14%) Query: 12 REISLT---RRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64 RE+ + + A +GDT ++T E + + + ++ G Sbjct: 12 RELKVEFGKVGMLSNAA--TFTSYGDTVIMTNVNASEEPREGIDFFPLSVEYEERLYAVG 69 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G +KRE GR ++ R + R +R + Q++ ++ D Sbjct: 70 KIP---GGFIKRE---GRPSEKAILNGRAVDRTIRPLFPKGYRNDVQVVTTVVSVEKDNI 123 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD--YGED 182 AI A +AL S VAA+ G++ G + + D E+ Sbjct: 124 PEILAINAASLALC-------------LSSIPYTIPVAAVQVGLIDGKLVTNPDSKGREE 170 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 S + T ++ ++ +D + D +I Q++ ++ Sbjct: 171 SILH--LTVCATKE-RVMMIEAGGNEIP--EDKMIEAIEYGFDECQKIISFQEEAMAK 223 >gi|258620317|ref|ZP_05715355.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573] gi|258587196|gb|EEW11907.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573] Length = 709 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ LN AK ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537 Query: 234 QKDVIS 239 IS Sbjct: 538 MDQAIS 543 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT + + +++ + +T Y + G Sbjct: 17 VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + Q+I + D Sbjct: 74 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E +D Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 TD+ ++ +E +++ A + D Q+ + N + Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHD--------QQQAVINAI 220 >gi|195449886|ref|XP_002072269.1| GK22421 [Drosophila willistoni] gi|194168354|gb|EDW83255.1| GK22421 [Drosophila willistoni] Length = 769 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 85/249 (34%), Gaps = 17/249 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------- 54 R GR + +R IS + K GS L + G T + T +L+ ++ Sbjct: 353 RCDGRDFDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDSLAALESG 412 Query: 55 --KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K Y P +TG + G G R + RAL + + Sbjct: 413 GLKSKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERALMPTLPSD--YPFTV 466 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A++ G +AL D + + + V + + + Sbjct: 467 RLTSEVLESNGSSSMASVCGGSLALLDAGVPVSAPAAGVAIGLVTRYENND-TKHLQDYR 525 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G +Q + L A D + ++ Sbjct: 526 ILTDILGIEDYLGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 584 Query: 233 LQKDVISNE 241 + + I Sbjct: 585 IMSEAIREP 593 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 86/234 (36%), Gaps = 32/234 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R ++++ ++A G+ + + GDT ++ TA + K + +Y + ++ Sbjct: 48 RNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTP---GQNFMPLVVDYRLKNAAS 104 Query: 71 GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G R+ + G +EI R+I R+LR + Q++ + + A Sbjct: 105 G-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKEYRNETQLVCNMLSMDAVHSPDVL 163 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 AI A +AL G + A+ G+ G +++ E + +D Sbjct: 164 AINAASMALS-------------LSDIPWNGPIGAVRVGLCEGEVLINPTRRELQSSQLD 210 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQK 235 T +V ++G + +L K I ++ +LQK Sbjct: 211 LVVSATKQNLVVMLEGKGQVVL-----LQDLLKAIKQGTREAQFIIQEIERLQK 259 >gi|82545596|ref|YP_409543.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii Sb227] gi|81247007|gb|ABB67715.1| polynucleotide phosphorylase [Shigella boydii Sb227] Length = 734 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R++ +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRSVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|317477841|ref|ZP_07937027.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36] gi|316905977|gb|EFV27745.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36] Length = 714 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T L+T TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAN--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEDKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 GKITECIAEP 548 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ R G KRE GR R++ RALR + + + ++ + Sbjct: 66 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V + D L + + G ++ + + G +++ + Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFE 169 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ + A + I K Q + ++ Sbjct: 170 QLEQADMDLMVGATYE-NIMMVEG--EMDEVSEQDLLEAMKAAHEAIKIQCKAQME-LAE 225 Query: 241 EV 242 EV Sbjct: 226 EV 227 >gi|222084321|ref|YP_002542850.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium radiobacter K84] gi|254782699|sp|B9JGS9|PNP_AGRRK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221721769|gb|ACM24925.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium radiobacter K84] Length = 710 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I V GS L G+T + ATL ++ G Sbjct: 316 RIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVRPMLPTAEQFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + + A+ + D+ Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD G I +Q + +++ LN AK ++ Sbjct: 483 LGDEDHLGDMDFKVAGTD-GGITALQMDIKIEGITEEIMNVALNQAKGGRLHILGEMAKA 541 Query: 238 ISN 240 IS Sbjct: 542 ISE 544 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ + +G+T +L T + + + + T G + Sbjct: 14 RPLKLETGKIARQADGAVMATYGETVVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + Q+++ VIQ D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ AL G + G + G +++ E Sbjct: 126 PDILSMVATSAAL-------------TLSGVPFMGPIGGARVGYINGEYVLNPHLDEMDE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E S+D + +I Sbjct: 173 SSLDLVVAGTQEAVLMV---ESEAKELSEDVMLGAVMFGHRGFQPVIDA 218 >gi|329960360|ref|ZP_08298785.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT 12057] gi|328532798|gb|EGF59580.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT 12057] Length = 714 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T L+T TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEDKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538 Query: 232 KLQKDVISNE 241 + ++ Sbjct: 539 GKITECLAEP 548 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ R G KRE GR R++ RALR + + + ++ + Sbjct: 66 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V + D L + + G ++ + + G +++ + Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFE 169 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ + A + I K Q + ++ Sbjct: 170 QLEKADMDLMVGATYE-NIMMVEG--EMDEVSERDLLEAMKAAHEAIKIQCKAQME-LAE 225 Query: 241 EV 242 EV Sbjct: 226 EV 227 >gi|83950704|ref|ZP_00959437.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens ISM] gi|83838603|gb|EAP77899.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens ISM] Length = 713 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + GS L G+T L TL + T Sbjct: 318 RIDGRDTTTVRPIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGTFKS 377 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGDFA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G I +Q + A + + L AKD ++ Sbjct: 481 ILTDILGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITPEIMKQALAQAKDGRLHILG 539 Query: 233 LQKDVISN 240 ++ Sbjct: 540 EMSKALTE 547 Score = 71.7 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+GS + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPIRPLFVDGF--KNEVLVMCTVLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----PIVDLDYGED 182 A+ A AL G +A G G P VD + Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAGCRVGYEDGEYILNPTVDDMHELR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 S D + V+ + V + S E +++ + A +++ ++ L Sbjct: 175 SNPDQRLDLVVAGTRDAVMMVES-EAYELTEEEMLGAVTFAHEQLKPVVDL 224 >gi|319403623|emb|CBI77208.1| polyribonucleotide nucleotidyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 733 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 87/242 (35%), Gaps = 18/242 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R I + GS L G+T L ATL ++ G Sbjct: 317 RIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ I + Sbjct: 377 TFLLHYNFPPFSVGEIGR----IGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + + +G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGKQFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ L AKD ++ Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKA 542 Query: 238 IS 239 ++ Sbjct: 543 LA 544 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 35/233 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T T + + + G + Sbjct: 14 RPLILETGKIARQADGAILATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEKNYAVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G +KRE+ R I R+I R +R + Q+I+ VIQ D Sbjct: 74 P---GGYLKRES---RPSESETLISRLIDRPIRPLFVDGYKNDTQVIVS--VIQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 AI + AL G +AA G G I++ + E Sbjct: 126 PDILAIIASSAALTLSGI-------------PFMGPIAAARIGYCNGQYILNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233 +D T++ ++ +E +D + + I +IKL Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAHELPEDVMLDAVMFGQKSFQPVINAIIKL 222 >gi|149189790|ref|ZP_01868071.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1] gi|148836439|gb|EDL53395.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1] Length = 713 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T + TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVEEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + + Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPNVQPDMV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELENSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+ G ++ V+ +E +++ + + D+ +IK + Sbjct: 178 LVVAGTE-GAVLMVE--SEADNLTEEEMLSAVVYGHDQQQVVIKAINE 222 >gi|253991498|ref|YP_003042854.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638376|emb|CAR66998.1| polyribonucleotide nucleotidyltransferase (ec 2.7.7.8) (polynucleotid phosphorylase) (pnpase) (cap87k) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782948|emb|CAQ86113.1| polyribonucleotide nucleotidyltransferase [Photorhabdus asymbiotica] Length = 708 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + I + G T Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 RFLLHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-VSALQMDIKIEGITREIMQVALNQAKGARLHILSV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 I++ + + A + +V DT + T ++KV +T Y + G Sbjct: 16 IAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKV---KAGQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR G + R+I R LR + L QI+ + Sbjct: 73 VPGSFFRRE---GRPGEGETLVARLIDRPLRPLFPEGFLNEVQIVATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALALSGI-------------PFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E +++ + Sbjct: 177 LVVSGT-AGAVLMVE--SEADLLTEEQMLGAV 205 >gi|160887886|ref|ZP_02068889.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492] gi|156862572|gb|EDO56003.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492] Length = 714 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T L+T TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAN--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEDKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 GKITECIAEP 548 Score = 88.6 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ R G KRE GR R++ RALR + + + ++ + Sbjct: 66 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V + D L + + G ++ + + G +++ + Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFE 169 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ + A + I K Q + ++ Sbjct: 170 QLEQADMDLMVGATYE-NIMMVEG--EMDEVSEQDLLEAMKAAHEAIKIQCKAQME-LAE 225 Query: 241 EV 242 EV Sbjct: 226 EV 227 >gi|157111536|ref|XP_001651608.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti] gi|108883782|gb|EAT48007.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti] Length = 777 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 88/247 (35%), Gaps = 16/247 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GRQ + +R+IS + K GS L + G T + T L+ + + Sbjct: 351 RCDGRQLDDLRKISCGVNLHKPLHGSALFQRGQTQVFATVALDSHESALKLDPITSLDMG 410 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +TG K G G R + + L ++ I Sbjct: 411 VKSKNFFLHYEFPPYATGETGK----IGPVGRREIGHGALAEKGLVPIIPHE--HPFTIR 464 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A + +AL D +++ + + V K + + Sbjct: 465 LTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLVTKYENND-TKHLQDYRI 523 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + DL ED D+D T G + +Q + L A + ++ + Sbjct: 524 LTDLLGIEDYMGDMDMKVAGTRRG-MTAIQADIKVPGIPLKVVMESLQKAMEARFRILDI 582 Query: 234 QKDVISN 240 + I++ Sbjct: 583 MDETIAS 589 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 81/231 (35%), Gaps = 25/231 (10%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R I ++ +++A+G +V GDT ++ TA + K P N+ + +Y + Sbjct: 45 RVIRISSGKYARFADGCSVVSVGDTAVMVTAVAKPK-PSGGNNS-FLPLVVDYRQKAAAA 102 Query: 71 GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G R+ + G +EI R++ R++R + Q++ + I + Sbjct: 103 G-RIPTNFLRRELGPSEKEILAARLVDRSIRPMFPAEYRSDTQLVCNMLAIDSSN----- 156 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 L D + G + A+ G++ I++ E +D Sbjct: 157 --------LPDVQAINAASAALALSDIPWNGPIGAVRVGLVDNEIIINPTRKELQLSSLD 208 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQK 235 +V ++G +++ + +I KLQK Sbjct: 209 LVVTAAKQNLVVMLEG--RGNVVNENELRMAIKKGTKEAQLIINGIEKLQK 257 >gi|291544643|emb|CBL17752.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. 18P13] Length = 706 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 84/248 (33%), Gaps = 29/248 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI- 59 R+ GR +++R ++ V GS L G T +LT AT I Sbjct: 314 RVDGRGIDEIRPLAAEVGVLPRVHGSGLFTRGQTQVLTVATLGPVSDAQRIDGIDEDVSK 373 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL V+ + + + Sbjct: 374 RYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALEPVIPPVEEFPYALRLVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 V+ ++G T +I G+ +AL D +K VA ISCG++ Sbjct: 430 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKAPVAGISCGLITKPDSDEF 476 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-IADL 230 +VD+ ED D+D T G I +Q + + L + I L Sbjct: 477 MTMVDIQGLEDFFGDMDFKVGGTHKG-ITAIQVDIKVDGLTPAIIEEALEKTRKARIYIL 535 Query: 231 IKLQKDVI 238 ++ I Sbjct: 536 DEIMLKAI 543 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 33/235 (14%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 RE+++ + + A GSC V++G + ++ T E + + + + G + Sbjct: 15 RELTVETGKTCELANGSCWVRYGGSVVMANVTASAKPREGIDFFPLSVDYEERLYAVGKI 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G+ +KRE G+ ++ RM+ R +R + +++ + D Sbjct: 75 P---GSFMKRE---GKPSEKAILTSRMVDRPIRPLFPKDMRNDVSVVMTVLAVDPDHSPE 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + +A+ G +A +S G++ G +++ + D Sbjct: 129 IMGMIATSIAIS-------------ISDIPWNGPIAGVSVGLVDGEIVLNPTLEQRGRND 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA-----KDRIADLIKLQKD 236 ++ TD IV ++ A + + + LA + +A + +QK Sbjct: 176 LNLTVAGTDK-KIVMIEAGANQ--VDEATMMQAI-LAGQAENEKMVAFIKDIQKQ 226 >gi|187734890|ref|YP_001877002.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila ATCC BAA-835] gi|226702592|sp|B2UNA9|PNP_AKKM8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187424942|gb|ACD04221.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila ATCC BAA-835] Length = 714 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 31/231 (13%) Query: 13 EISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 I++ A+G+ +V+ GDT +L T ++E + + ++ A GM P Sbjct: 14 PITIETGKMARLADGAVVVRSGDTVVLVTVVSATKVKEGQTFFPLSVEYKEKAAAAGMFP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G KRE GR + RM R LR + Q+I ++ ADG Sbjct: 74 ---GGYFKRE---GRPTEKEILTCRMTDRPLRPMFPKGYFYDTQVI--TLLLSADGENEP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 +I GA A V A+ G + G +++ + Sbjct: 126 DILSINGASAACV-------------VSDLPFAEPVGAVRVGRIDGQFVINPTNSQREHS 172 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D F T ++ ++GSA ++ F A L +A++ + + + Q++ Sbjct: 173 QLDLVFAGTKD-QVIMIEGSANE--LPEEDFIAALRVAQENVKVICEKQEE 220 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 34/254 (13%) Query: 2 RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R GR Q+R ++ V GS + G+T L ATL + G + Sbjct: 314 RADGRALKQLRPLTAEVNVLPPVVHGSAMFARGETMSLCLATLAPMEERQYMDNYTGSVN 373 Query: 61 -----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G+ + + R+ G + R++ VV I + Sbjct: 374 EKRFILHYNFPPFSVGDTGRFGGQNRREIGHG----ALAERSIAPVVPGEQEFPYAIRVS 429 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173 ++++++G T A++ ++L LK VA IS G++ Sbjct: 430 SEIMESNGSTSMASVCAGTMSLLAAGV-------------PLKRPVAGISVGLVTEQNDQ 476 Query: 174 --------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 ++D+ ED D+D T G + Q + +++AK Sbjct: 477 HEITSYKTLLDIIGSEDFYGDMDFKLCGTSEG-VTGYQLDLKLPGIPLSILEEAIHVAKA 535 Query: 226 RIADLIKLQKDVIS 239 D++K+ + I+ Sbjct: 536 GRTDVLKVMNEAIA 549 >gi|39933509|ref|NP_945785.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas palustris CGA009] gi|81564252|sp|Q6NCN8|PNP_RHOPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|39647355|emb|CAE25876.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas palustris CGA009] Length = 722 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 90/241 (37%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I V GS L G+T + TL ++ G Sbjct: 316 RIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQAMVVTTLGTGEDEQYVDSLSGTYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ RA+ V+ I + + Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ GA +AL D ++ + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A +++ L AKD ++ Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541 Query: 238 I 238 + Sbjct: 542 L 542 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 78/238 (32%), Gaps = 42/238 (17%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T +L T E V + G + Sbjct: 14 RPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQEKAYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + + R+I R +R + Q+I+ + Sbjct: 74 P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL KG + A G + +++ D + Sbjct: 128 VLAMVAASAAL-------------TLSGVPFKGPIGAARVGFINDEYVLNP--VLDEMAE 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229 V+ + V + S E S++ A+++LA+ + Sbjct: 173 TQLELVVAGTADAVLMVES-EAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKE 229 >gi|15963997|ref|NP_384350.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium meliloti 1021] gi|307306409|ref|ZP_07586153.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti BL225C] gi|307319296|ref|ZP_07598725.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti AK83] gi|81635311|sp|Q92SW0|PNP_RHIME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|15073173|emb|CAC41681.1| Probable polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti 1021] gi|306895132|gb|EFN25889.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti AK83] gi|306902251|gb|EFN32848.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti BL225C] Length = 717 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + GS L G+T + ATL ++ G Sbjct: 317 RIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + + + + Sbjct: 377 NFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + + A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ LN AK ++ Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMAKA 542 Query: 238 ISN 240 IS Sbjct: 543 ISE 545 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q+II V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIIT--VMQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 D + + + G V G + G +++ E Sbjct: 126 P-------------DVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E +D + + +I Sbjct: 173 STLDLVVAGTQEAVLMV---ESEAKELPEDVMLGAVVFGQKGFQPVIDA 218 >gi|114046602|ref|YP_737152.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-7] gi|123131654|sp|Q0HXR0|PNP_SHESR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|113888044|gb|ABI42095.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-7] Length = 699 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPTAEEFPYSVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ G +AL D +K VA I+ G++ + + Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDNFVV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I + Sbjct: 536 MDQAIGSH 543 Score = 71.7 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 27/208 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 74 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ + Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYVLNPTVT--QLANSQ 173 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216 N V+ + V + S E ++ Sbjct: 174 LNLVVAGTEGAVLMVES-EAQALPEEVM 200 >gi|194246773|ref|YP_002004412.1| polynucleotide phosphorylase/polyadenylase [Candidatus Phytoplasma mali] gi|257096701|sp|B3QZG1|PNP_PHYMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|193807130|emb|CAP18568.1| Polyribonucleotide nucleotidyltransferase [Candidatus Phytoplasma mali] Length = 728 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 17/241 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR +++R I+ + GS L G T L TL E K+ + + Sbjct: 337 IRPDGRNSSEIRSITSRIDILPRTHGSALFTRGGTQSLAIVTLGTLRESKIIDDLSDEVD 396 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y + G+ + A S R+ G + +AL V+ I + Sbjct: 397 KRFMLHYNFPAFAVGSVGRYLAPSRREIGHGM----LAEKALECVLPSENDFPYSIRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 +++ ++G + A I + +AL ++ + ++ + Y I+ Sbjct: 453 EILDSNGSSSQATICASSMALMSAGVPLKSLVAGVAMGLIVDD------IDKINHYTILS 506 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-RIADLIKLQ 234 D++ ED D+D T G I +Q + + + F +L AK RI L +++ Sbjct: 507 DIEGLEDYQGDIDFKIAGTKVG-ITALQLDIKIKGITLEIFEKVLEQAKKDRIKILNEME 565 Query: 235 K 235 K Sbjct: 566 K 566 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 82/237 (34%), Gaps = 35/237 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GM 65 + + +S+ A GS ++ + DT +L+ A +K + +T Y G Sbjct: 22 LRIEIGEISRQANGSVMLFYKDTVILSVAVCGDK----KNSLNFLPLTVNYQEKLYAAGK 77 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P G ++RE G+ + R+I R +R + + Q+I DG Sbjct: 78 IP---GGFLRRE---GKPSDQEILCSRLIDRTIRPLFSKNFKNEVQLINMVLSSDPDGNN 131 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 + + V+++ G + I++ + Sbjct: 132 EN-------------IALLGSSLALLISDIPFFEPVSSVCVGKIGDNLIINPTLSQRENS 178 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T + V+ S++ S+++F + + I L Q + I+N++ Sbjct: 179 SFFLILAGTKD-SLNMVEMSSKE--ISENNFLESIKFGHEIIKKLCLFQTE-IANQI 231 >gi|269961984|ref|ZP_06176339.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3] gi|269833307|gb|EEZ87411.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3] Length = 660 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELEASKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+S ++ +E +++ + + D+ +I + Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVYGHDQQQTVINAINE 222 >gi|312885115|ref|ZP_07744800.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367215|gb|EFP94782.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus ATCC BAA-2122] Length = 708 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 96/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R +++++ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAIMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E + +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELESSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 TDS ++ +E +++ + + D Q+ V+ N + Sbjct: 178 LVVAGTDSAVLMV---ESEADNLTEEEMLSAVVFGHD--------QQQVVINAI 220 >gi|300721542|ref|YP_003710817.1| polynucleotide phosphorylase [Xenorhabdus nematophila ATCC 19061] gi|297628034|emb|CBJ88583.1| polynucleotide phosphorylase, has polyadenylase activity [Xenorhabdus nematophila ATCC 19061] Length = 712 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 99/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHG 57 R+ GR+++ +R + + V GS L G+T L ATL + V + + Sbjct: 319 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQVIDELMGERTD 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ ++ + + + Sbjct: 379 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPNASEFPYTVRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 435 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 481 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 482 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITREIMQIALNQAKGARLHILSV 540 Query: 234 QKDVISNE 241 + I + Sbjct: 541 MEQAIESP 548 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 +++ + + A + +V DT + T ++K+ +T Y + G Sbjct: 16 VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR G + R+I R LR + L QII + Sbjct: 73 IPGSFFRRE---GRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALALSGI-------------PFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T+S ++ +E ++D + Sbjct: 177 LVVAGTESAVLMV---ESEAELLTEDQMLGAV 205 >gi|265754741|ref|ZP_06089793.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_33FAA] gi|263234855|gb|EEZ20423.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_33FAA] Length = 728 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 336 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 395 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 396 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAG--YPYTVRVVSD 449 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 450 IMESNGSSSMATVCAGTLALMDAGVAM-------------KKPVSGIAMGLIKNAGEEKY 496 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 497 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHIL 555 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 556 NKLTECIAEP 565 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 29 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 82 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ RALR + + + ++ + Sbjct: 83 EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIVLFS 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG + + D L + + G ++ + + G +++ + Sbjct: 138 ADG-----------IDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFE 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ A + A + I K Q +++ Sbjct: 187 QLGKADMDLMVAATYD-NIMMVEG--EMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEE 243 >gi|152979713|ref|YP_001345342.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus succinogenes 130Z] gi|187470960|sp|A6VR10|PNP_ACTSZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|150841436|gb|ABR75407.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus succinogenes 130Z] Length = 707 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L TL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVVTLGTERDAQILDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 TFLFHYNFPPYSVGETGRVGSPKRREIGHG----RLAKRGVAAVMPSISEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PVKSAVAGIAMGLVKEEDKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVIS 239 + I+ Sbjct: 536 MEQAIA 541 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + + ++E + + + G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVDYQERSYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + L QII + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALA-------------LSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E +++ A + + +I+ K+++ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKELVKE 224 >gi|297620923|ref|YP_003709060.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU 86-1044] gi|297376224|gb|ADI38054.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU 86-1044] Length = 698 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 26/244 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKHG 57 R GR NQ+R I + + + G L G+T + T + + Sbjct: 317 RSDGRATNQVRPIWIEQGLLPRTHGCSLFTRGETQTVAICTLGGNNMAQRYEDLNGEGSR 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y P S G + G G R ++ RAL S++ I ++ + Sbjct: 377 SFYLQYFFPPFSVGEVGR----VGPPGRREVGHGKLAERALASILPSKEEFPYTIRLESN 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G +A+ D + V+ I+ G++ Sbjct: 433 ITESNGSSSMASVCGGCLAMMDAGV-------------PITRPVSGIAMGLILEENHYTI 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED+ D+D V D I Q + + D A L AK+ +++ Sbjct: 480 LSDILGIEDALGDMDFK-VTGDKNGITAFQMDIKVEGITIDIMRAALAQAKEGRIHILEK 538 Query: 234 QKDV 237 + Sbjct: 539 MFEA 542 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 80/226 (35%), Gaps = 27/226 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGMLP 67 EI+ +++ A G+ +VK G+T L TA E V + A G Sbjct: 14 EITFETGQIARQANGAVVVKSGETMLFCSACATAEPLENVDFLPLRVDYQEKFASAGK-- 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 + G +KRE GR R + R+I R +R + + Q++ DG Sbjct: 72 -TLGGFIKRE---GRPTERETLVCRLIDRPIRPLFEEGYYQDTQLLSYVW--SYDG---- 121 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 V D L + LK V A+ GM+ G I++ + Sbjct: 122 -------VNSPDALAICAASAALTISDIPLKKAVGAVRVGMIDGQFILNPTVEHQEKSVL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D T+ ++ ++G +++ +++ I + + Sbjct: 175 DLMIAGTEDA-VLMIEG--YCKFLTEEQVIEAISIGHQGIQTICRA 217 >gi|254418578|ref|ZP_05032302.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3] gi|196184755|gb|EDX79731.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3] Length = 745 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 17/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +++R I V GS L G+T L ATL ++ T Sbjct: 317 RVDGRALDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYIDSLQGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ I + + Sbjct: 377 SFLLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAIRPMLPSKEDFPYTIRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G+ +AL D + + + +L+ + D+ Sbjct: 433 ITESNGSSSMATVCGSSLALMDAGVPLIRPVSGIAMGLILEPSGEFA--------ILSDI 484 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + A +++ L A ++ Sbjct: 485 LGDEDHLGDMDFKVAGTSEG-ITSLQMDIKVAGITKEIMKQALTQASAGRLHILDEMSKA 543 Query: 238 I 238 + Sbjct: 544 M 544 Score = 98.2 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T + + + + + T G + Sbjct: 14 RPLTLETGRIARQADGAVLATYGETVVLATVVYGRSPKPGLDFFPLTVNYQEKTFAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + Q++I V+Q D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNETQVVIT--VLQHDMEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 + A AL G + A G++ G +++ + Sbjct: 126 PDVLGMVAASAAL-------------TISGVPFMGPIGAARVGLIDGELVLNPTVDQIPG 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D+D T + +E S++ L A + +I Sbjct: 173 SDLDLVVAGTQD---ALMMVESEAKELSEEKMLEALMFAHAGMQPVIDA 218 >gi|117919484|ref|YP_868676.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. ANA-3] gi|187611298|sp|A0KU01|PNP_SHESA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|117611816|gb|ABK47270.1| 3' exoribonuclease [Shewanella sp. ANA-3] Length = 699 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPTAEEFPYSVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ G +AL D +K VA I+ G++ + + Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDNFVV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I + Sbjct: 536 MDQAIGSH 543 Score = 71.7 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 27/206 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 74 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ + + ++ Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYVLNPTVTQLESSQLN 175 Query: 189 ANFVMTDSGHIV---EVQGSAERATF 211 T+S ++ E Q E Sbjct: 176 LVVAGTESAVLMVESEAQALPEEVML 201 >gi|261856059|ref|YP_003263342.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus neapolitanus c2] gi|261836528|gb|ACX96295.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus neapolitanus c2] Length = 698 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 90/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ V GS L G+T L TL + + G Sbjct: 315 RIDGRDTKTIRPITVRTGVLPRVHGSALFTRGETQALVVTTLGSARDAQLIDAVVGEYKE 374 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + A R+ G + R +++V+ + + + Sbjct: 375 SFIFHYNFPPYSVGETGRFGAPKRREIGHG----NLARRGVKAVIPNPENSPYTLRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +++ D + VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGVEIAA-------------PVAGIAMGLIKEGNRFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L+ AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGTADG-VTALQMDIKINGITREIMSQALDQAKGGRLHILGI 536 Query: 234 QKDVIS 239 ++ Sbjct: 537 MNAALA 542 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 70/220 (31%), Gaps = 27/220 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72 ++LT +++ A G+ +V+ GDT +L T +E +T EY Sbjct: 17 VTLTTGEIARQASGAVMVQMGDTVVLVTVVVESAPEP---GQDFLPLTVEYQ-EKFYAAG 72 Query: 73 RVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 R+ GRS E I R+I R LR + Q+I + + Sbjct: 73 RIPGGFFKRE--GRSTEAETLIARLIDRPLRPLFPKGFYNQVQVIAQVLSLDPEVPGDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL H+ A G + +++ E D Sbjct: 131 AMLGASAALALSGL-------------PFDAHLGAARVGYINEAFVLNPAQTE--MADSR 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 V+ + V + S E + + + Sbjct: 176 LELVVAGTEEAVLMVES-EADRLPEATMLDAVMFGHEAAQ 214 >gi|119774103|ref|YP_926843.1| polynucleotide phosphorylase/polyadenylase [Shewanella amazonensis SB2B] gi|187611289|sp|A1S467|PNP_SHEAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|119766603|gb|ABL99173.1| Polyribonucleotide nucleotidyltransferase [Shewanella amazonensis SB2B] Length = 699 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 314 RIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ G +AL D +K VA I+ G++ + + Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDNFVV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535 Query: 234 QKDVISN 240 I + Sbjct: 536 MDQAIGS 542 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68 ++L V + A+G+ + GDT +L T +++ + + T G +P Sbjct: 15 VTLETGVIARQADGAVMASMGDTTVLVTVVGKKEADPGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 74 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPDDFTNEVQVIITVVSVDPQIEPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ E + ++D Sbjct: 129 SMIGTSAALAISGI-------------PFNGPLGAARVGYVNGEYVLNPGAAELAGSELD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T S ++ +E + ++ + D Q+ V+ N + Sbjct: 176 LVVAGTQSAVLMV---ESEAKSLPEEVMLGAVVYGHD--------QQQVVINAI 218 >gi|254880757|ref|ZP_05253467.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_3_47FAA] gi|294778033|ref|ZP_06743467.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus PC510] gi|319639767|ref|ZP_07994497.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A] gi|254833550|gb|EET13859.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_3_47FAA] gi|294448091|gb|EFG16657.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus PC510] gi|317388584|gb|EFV69433.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A] Length = 728 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 336 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 395 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 396 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAG--YPYTVRVVSD 449 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 450 IMESNGSSSMATVCAGTLALMDAGVAM-------------KKPVSGIAMGLIKNAGEEKY 496 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 497 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHIL 555 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 556 NKLTECIAEP 565 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 29 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 82 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ RALR + + + ++ + Sbjct: 83 EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIVLFS 137 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG + + D L + + G ++ + + G +++ + Sbjct: 138 ADG-----------IDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFE 186 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ A + A + I K Q +++ Sbjct: 187 QLEKADMDLMVAATYD-NIMMVEG--EMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEE 243 >gi|89072579|ref|ZP_01159151.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp. SKA34] gi|89051683|gb|EAR57136.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp. SKA34] Length = 708 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + K Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGLTGEKKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD G I +Q + +++ LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSV 535 Query: 234 QKDVISNE 241 + I+ Sbjct: 536 MDNAINTP 543 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 62/212 (29%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 15 VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVNPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + +++ E +D Sbjct: 129 TMIGTSAALTISGI-------------PFNGPIGAARVGYINDQFVLNPSNVELEESRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T ++ +E S++ + Sbjct: 176 LVVAGTKDAVLMV---ESEADRLSEEQMLQAV 204 >gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group] gi|75243278|sp|Q84T68|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName: Full=Exosome component 5; AltName: Full=Ribosomal RNA-processing protein 46; Short=oRrp46 gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group] gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed [Oryza sativa Japonica Group] gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group] gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group] Length = 238 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 71/198 (35%), Gaps = 27/198 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R S TR A GS GDT +L + N + I Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + ++G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 65 VWK-------------PMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180 DG AI AL LK AI CG+L G I+D + Sbjct: 112 DGSLLPCAINACCAALVFAGI-------------PLKHLAVAIGCGVLEDGEVILDTNKA 158 Query: 181 EDSTIDVDANFVMTDSGH 198 E+ + A+ V +S Sbjct: 159 EEQQLKSFAHLVFPNSRK 176 >gi|114769588|ref|ZP_01447198.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium HTCC2255] gi|114549293|gb|EAU52175.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium HTCC2255] gi|297183954|gb|ADI20075.1| hypothetical protein [uncultured alpha proteobacterium EB080_L11F12] gi|297184260|gb|ADI20378.1| hypothetical protein [uncultured alpha proteobacterium EB080_L27A02] Length = 709 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + +R I V GS L G+T L TL + + G + Sbjct: 318 RIDGRDLSTVRPIVSETAVLPRTHGSALFTRGETQALAVTTLGTGDDEQMIDALSGTYRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R GR R ++ RAL++V+ I + + Sbjct: 378 NFLLHYNFPPYSVGE-CGRMMGPGR---REIGHGKLAWRALQAVLPPVTEFPYTIRMVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D + + +L+ + D+ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLILQDSGEYA--------VLTDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A + + + AKD ++ + Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKAMEQAKDGRLHILGEMANA 544 Query: 238 ISN 240 ++ Sbjct: 545 LTE 547 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A+ + + +G+T +L +E + + G +P Sbjct: 16 LTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLTVNYQEKYYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + QI + V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPIRPLFIPGFKHEVQITLT--VLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182 A+ A AL G + G G +++ + Sbjct: 128 MVAMIAASAALTLSGA-------------PFMGPIGNCRVGFEGGQYVLNPTCDDMHELK 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D + V+ + V + S E +++ +N A ++I +I + Sbjct: 175 NNPDQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAINFAHEQIQPVIDM 224 >gi|150398632|ref|YP_001329099.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium medicae WSM419] gi|187611291|sp|A6UF34|PNP_SINMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|150030147|gb|ABR62264.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae WSM419] Length = 714 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + GS L G+T + ATL ++ G Sbjct: 317 RIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + + + + Sbjct: 377 NFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + + A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G + +Q + A +++ L+ AK ++ Sbjct: 484 LGDEDHLGDMDFKVAGTEAG-VTSLQMDIKIAGITEEIMKVALDQAKHGRVHILGEMAKA 542 Query: 238 ISN 240 IS Sbjct: 543 ISE 545 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q+II V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIIT--VMQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 D + + + G V G + G +++ E Sbjct: 126 P-------------DVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E S++ + + +I Sbjct: 173 STLDLVVAGTQDAVLMV---ESEAKELSEEIMLGAVVFGQKGFQPVIDA 218 >gi|296195656|ref|XP_002745482.1| PREDICTED: exosome complex exonuclease RRP45 [Callithrix jacchus] Length = 440 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 30/260 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GRQ R I ++ + Y G C+V+ G T +L + E P R T+ G + Sbjct: 23 RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVSCELVAPKLNRATE-GILFF 78 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 + + GRQ ++ R++ R LR +D +L G + QI Sbjct: 79 NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163 +D ++ DG AA A VAL + + + + + Sbjct: 134 VDLHLLNHDGNIIDAASVAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193 Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 +S Y +VD + E+ +D M I +Q S +D Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252 Query: 222 LAKDRIADLIKLQKDVISNE 241 +A ++A++ +L + + N+ Sbjct: 253 IAGVKVAEITELIQKALEND 272 >gi|183600370|ref|ZP_02961863.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827] gi|188020161|gb|EDU58201.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827] Length = 722 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + + G T Sbjct: 330 RIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 389 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 390 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVMAVMPDHADFPYTVRVVSE 445 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 446 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDDFVV 492 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 493 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITREIMQVALNQAKGARLHILGT 551 Query: 234 QKDVISNE 241 + I++ Sbjct: 552 MEQAINSP 559 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 81/233 (34%), Gaps = 31/233 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 +S+ +++ A + +V DT + TA ++KV +T Y + G Sbjct: 31 VSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKV---KEGQDFFPLTVNYQERSYAAGR 87 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR G I R+I R LR + L QII + Sbjct: 88 IPGSFFRRE---GRPGEGETLIARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIV 144 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 145 AMIGASAALA-------------LSGVPFNGPIGAARVGFINDQYVLNPTADELKLSRLD 191 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T+S ++ +E S++ + D+ I ++ +L K+ Sbjct: 192 LVVAGTESAVLMV---ESEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEA 241 >gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46 gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46 gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46 Length = 246 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 71/198 (35%), Gaps = 27/198 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R S TR A GS GDT +L + N + I Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + ++G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 65 VWK-------------PMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180 DG AI AL LK AI CG+L G I+D + Sbjct: 112 DGSLLPCAINACCAALVFAGI-------------PLKHLAVAIGCGVLEDGEVILDTNKA 158 Query: 181 EDSTIDVDANFVMTDSGH 198 E+ + A+ V +S Sbjct: 159 EEQQLKSFAHLVFPNSRK 176 >gi|108810762|ref|YP_646529.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Nepal516] gi|108774410|gb|ABG16929.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Nepal516] Length = 731 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + + GS L G+T L TATL + + Sbjct: 341 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 400 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ ++ I + + Sbjct: 401 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 456 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 457 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 503 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 504 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 562 Query: 234 QKDVISNE 241 + IS Sbjct: 563 MEQAISTP 570 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 42 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 100 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 101 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 155 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA L G + A G + +++ E +D Sbjct: 156 ALIGASAVLSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 202 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S++ + Sbjct: 203 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 231 >gi|108808983|ref|YP_652899.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Antiqua] gi|108780896|gb|ABG14954.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Antiqua] Length = 731 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + + GS L G+T L TATL + + Sbjct: 341 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 400 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ ++ I + + Sbjct: 401 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 456 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 457 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 503 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 504 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 562 Query: 234 QKDVISNE 241 + IS Sbjct: 563 MEQAISTP 570 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 42 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 100 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 101 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 155 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 156 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 202 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S++ + Sbjct: 203 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 231 >gi|94987448|ref|YP_595381.1| polynucleotide phosphorylase/polyadenylase [Lawsonia intracellularis PHE/MN1-00] gi|187610280|sp|Q1MPL7|PNP_LAWIP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|94731697|emb|CAJ55060.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Lawsonia intracellularis PHE/MN1-00] Length = 736 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 27/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +R+ GR +R I++ + GS L G+T L TL ++ G Sbjct: 322 LRIDGRDTITVRPIAIEVGLLPRTHGSALFTRGETQSLCITTLGSSTDNQRVDSLAGDTV 381 Query: 58 -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G E R R + +AL+ ++ + I Sbjct: 382 KNFMLHYNFPPFSVG-----EVKPVRVSRREIGHGALAEKALKYILPSQNTFPFTVRIVA 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 + ++++G + AAI G ++L D + VA ++ G++ Sbjct: 437 ETLESNGSSSMAAICGGCLSLMDAGV-------------PISAPVAGVAMGLIKEDDQFI 483 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G I VQ + + D + A++ ++ Sbjct: 484 VLTDIIGDEDAFGDMDFKIAGTTKG-ITAVQMDIKITGLTTDVMRKAMEQAREARIHILS 542 Query: 233 LQKDVI 238 + Sbjct: 543 EMAKAL 548 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 74/229 (32%), Gaps = 27/229 (11%) Query: 13 EISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLP 67 EI A GS V+ G T +L T + +T EY Sbjct: 18 EIIFETGYMATQANGSLTVQCGGTIVLVTVC----SQPLESDKGFFPLTVEYSEKMYAAG 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 R G+ +RE GR R I R+I R +R + QI+ + + + Sbjct: 74 RIPGSFFRREI--GRPSERETLISRLIDRPIRPMFPKGLAEDVQILANVISSDQENESDI 131 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA A+ S + +AA G L G +++ E Sbjct: 132 LAVTGASAAV-------------MLSSLPFECAIAAGRIGRLNGQFVLNPTINEIELS-- 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D N V S V V E ++ L I +I LQ Sbjct: 177 DLNIVFAASSEAV-VMVEGEANVVEEEIIIEALEWGHKEIQPIITLQNK 224 >gi|332090702|gb|EGI95796.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 3594-74] Length = 696 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 300 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 359 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R++ +V+ D+ + + Sbjct: 360 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRSVLAVMPDMDKFP-YTVRVVS 414 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 415 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 461 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 462 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 520 Query: 233 LQKDVIS 239 + + I+ Sbjct: 521 VMEQAIN 527 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 1 MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 57 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 58 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 114 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 115 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 161 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 162 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 211 >gi|238750129|ref|ZP_04611632.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC 43380] gi|238711673|gb|EEQ03888.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC 43380] Length = 707 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ +A + + + Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPNAADFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 65.5 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L + + A + +V DT + T + + + T G +P Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S+D + Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 205 >gi|240949645|ref|ZP_04753980.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor NM305] gi|240295903|gb|EER46579.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor NM305] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS L G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITSEIMRIALNQAKGARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 68.2 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T + E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E +++ A + ++ +I+ K+ + Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224 >gi|237709532|ref|ZP_04540013.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 9_1_42FAA] gi|237724873|ref|ZP_04555354.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D4] gi|229436611|gb|EEO46688.1| polyribonucleotide nucleotidyltransferase [Bacteroides dorei 5_1_36/D4] gi|229456588|gb|EEO62309.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 9_1_42FAA] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAG--YPYTVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 433 IMESNGSSSMATVCAGTLALMDAGVAM-------------KKPVSGIAMGLIKNAGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 NKLTECIAEP 548 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ RALR + + + ++ + Sbjct: 66 EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIVLFS 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG + + D L + + G ++ + + G +++ + Sbjct: 121 ADG-----------IDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFE 169 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ A + A + I K Q +++ Sbjct: 170 QLGKADMDLMVAATYD-NIMMVEG--EMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEE 226 >gi|323499449|ref|ZP_08104421.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM 21326] gi|323315505|gb|EGA68544.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM 21326] Length = 706 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 75/234 (32%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E T +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T+S ++ +E +++ + + D Q+ + N + Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHD--------QQQAVINAI 220 >gi|260887793|ref|ZP_05899056.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena ATCC 35185] gi|330838689|ref|YP_004413269.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena ATCC 35185] gi|260862469|gb|EEX76969.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena ATCC 35185] gi|329746453|gb|AEB99809.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena ATCC 35185] Length = 689 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 97/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR +++R +S + GS L G T +LT T +E++ + + Sbjct: 310 IRPDGRALDEVRPVSCEVGLLPRTHGSGLFTRGQTQVLTITTLGSVGDEQIIDGLGPEQS 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y S G R+ G + RAL ++ I + Sbjct: 370 KHYIHQYNFPGYSVGEARPARGPGRREIGHG----ALAERALLPMIPSLDEFPYTIRLVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + ++ G+ ++L + +K V+ ++ G++ Sbjct: 426 EVLESNGSSSMGSVCGSTLSLMNAGV-------------PIKRPVSGVAMGLVKDGDHYT 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T+ G + +Q + A ++D + L+ AK A +++ Sbjct: 473 ILTDIQGMEDALGDMDFKVAGTEKG-VTAIQMDIKIAGITRDILLSALSQAKRGRAFILE 531 Query: 233 LQKDVISNE 241 VI Sbjct: 532 KMLAVIDKP 540 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + + K A GS LV++GDT +L AT E + + G + Sbjct: 11 RPLIIEQGKMAKQANGSVLVRYGDTAVLVAATASAEPREGIDFFPLTVDFEEKMYAAGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I R +R + QII + D Sbjct: 71 P---GGFIKRE---GRPSESAILCSRLIDRPIRPLFPEGFRNDVQIIATVLCVDQDNAPE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A + GA AL G +A + G + G +++ E Sbjct: 125 IAGMIGASCALC-------------VSDIPFAGPIAGVKVGRVDGELVINPT--EAQRAV 169 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D N + S V + + ++ + I +++ Q++ Sbjct: 170 SDLNLTVAGSHDAVMMVEAG-ANELPEEVILEAILFGHKEIQRIVEFQQE 218 >gi|33861747|ref|NP_893308.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81575818|sp|Q7V0R5|PNP_PROMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|33640115|emb|CAE19650.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 721 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 97/238 (40%), Gaps = 36/238 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A G+ +++ GDT LL TAT K + + +Y Sbjct: 13 REIRLTTGLYAPQAGGAVMIECGDTSLLVTATKTTK----KQAADFLPLICDYEEKLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122 R G ++RE GR R+ I R+I R +R + QI+ C + AD Sbjct: 69 GRIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPAD 125 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 +TGA +A G +AA+ G++ I++ Y E Sbjct: 126 ----VLGVTGASIATLLA-------------EIPFYGPMAAVRVGLIGDDFILNPSYREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + +++LIK Q++++ + Sbjct: 169 EKGDLDIVVAGSPEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVSELIKAQENLLKD 223 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 92/251 (36%), Gaps = 31/251 (12%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR +++R+IS + + K GS L + G T +L+T TL P + + Sbjct: 323 RVDGRDLDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380 Query: 61 AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 E Y P S G R+ G + RA+ V+ + + Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRTPGRREIGHG----ALAERAITPVLPGKETFPYVLRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ ++L D LK V+ + G++ Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVSGTAMGLIKEGKE 483 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G I +Q + + A+ + Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPVSVISDAIKKARPARLHI 542 Query: 231 IKLQKDVISNE 241 ++ ++ I Sbjct: 543 LEKMQEAIDKP 553 >gi|22124608|ref|NP_668031.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis KIM 10] gi|45440447|ref|NP_991986.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Microtus str. 91001] gi|167399496|ref|ZP_02305020.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|21957412|gb|AAM84282.1|AE013671_9 polynucleotide phosphorylase [Yersinia pestis KIM 10] gi|45435304|gb|AAS60863.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|167052000|gb|EDR63408.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 737 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + + GS L G+T L TATL + + Sbjct: 347 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 406 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ ++ I + + Sbjct: 407 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 462 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 463 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 509 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 510 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 568 Query: 234 QKDVISNE 241 + IS Sbjct: 569 MEQAISTP 576 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 48 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 106 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 107 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 161 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 162 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 208 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S++ + Sbjct: 209 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 237 >gi|148259386|ref|YP_001233513.1| polynucleotide phosphorylase/polyadenylase [Acidiphilium cryptum JF-5] gi|326402607|ref|YP_004282688.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum AIU301] gi|187470957|sp|A5FVG2|PNP_ACICJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146401067|gb|ABQ29594.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium cryptum JF-5] gi|325049468|dbj|BAJ79806.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum AIU301] Length = 717 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 92/246 (37%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +R I V GS L G+T L ATL I + G Sbjct: 315 IRIDGRDTRTVRPILAEVGVLPRTHGSALFTRGETQALVVATLGTAQDEQIVDAIEGEYR 374 Query: 61 ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + + R+ G ++ RA+ ++ + + Sbjct: 375 ERFLLHYNFPPFSVGETGRVGSPGRREVGHG----KLAWRAIHPLLPGKDKFPYTLRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A + G +AL D L VA I+ G++ G+ Sbjct: 431 EITESNGSSSMATVCGTSLALMDAGV-------------PLPRPVAGIAMGLIKEDKGFA 477 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D T++G + +Q + + + + L+ AKD ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTEAG-VTSLQMDIKITSITPEIMKIALDQAKDGRLHILG 536 Query: 233 LQKDVI 238 + Sbjct: 537 EMSKAL 542 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 31/231 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 R++ L V++ A+G+ + +GDT +L T V +T Y Sbjct: 16 RKLILETGKVARQADGAVVASYGDTVVLATVVGARSVKP---GQDFFPLTVNYQEKFYAA 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 R G KRE GR R R+I R +R + Q+I++ + Sbjct: 73 GRIPGGFFKRE---GRPTERETLTSRLIDRPIRPLFPHGFRNEVQVIVNVLSHDLENEPD 129 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ A AL G V A G + G I++ + + Sbjct: 130 IVSLVAASAALTLSGI-------------PFFGPVGAARIGYIDGEYILNPTSAQIAESR 176 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233 +D T+ G ++ +E S++ + I +I+L Sbjct: 177 LDLVLAGTEEGVLMV---ESEAHELSEETMLGAVTFGHAAFQPVIQAIIEL 224 >gi|254507523|ref|ZP_05119657.1| 3' exoribonuclease family, domain 2, protein [Vibrio parahaemolyticus 16] gi|219549593|gb|EED26584.1| 3' exoribonuclease family, domain 2, protein [Vibrio parahaemolyticus 16] Length = 709 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELEASKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+S ++ +E +++ + + D+ +IK + Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222 >gi|225708190|gb|ACO09941.1| Exosome complex exonuclease RRP45 [Osmerus mordax] Length = 398 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 92/260 (35%), Gaps = 30/260 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GRQ R I ++ + Y G C V G T ++T + E VP R + G + Sbjct: 23 RLDGRQIYDYRTIKISFG-TDY--GCCFVDLGKTRVMTQVSCELVVPKDNRPSD-GIMFF 78 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 + P ++ GRQ ++ R + R LR D +L G + QI Sbjct: 79 NVELSPMASPG-----FEVGRQSELLVKLNRQLERCLRNSKCFDTESLCVVSGEKVWQIR 133 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME------------DCSNKFQLSQVLKGHV 161 +D V+ DG AA A AL + + + LS Sbjct: 134 VDVHVLNHDGNLMDAASVAAITALSHFRRPDVGIHGEEVTVYGSEERDPIPLSIYHMPIC 193 Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 + S Y +VD E+ +D M I +Q S ++ Sbjct: 194 VSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSG-GIMLLKEQVLRCSK 252 Query: 222 LAKDRIADLIKLQKDVISNE 241 +A ++ ++ +L + N+ Sbjct: 253 IASVKVTEITELIHKALEND 272 >gi|331664778|ref|ZP_08365683.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143] gi|324115230|gb|EGC09194.1| polyribonucleotide nucleotidyltransferase [Escherichia fergusonii B253] gi|331058026|gb|EGI30008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143] Length = 721 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 385 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 440 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 486 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 487 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 545 Query: 233 LQKDVIS 239 + + I+ Sbjct: 546 VMEQAIN 552 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 82 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 83 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 187 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 236 >gi|153004013|ref|YP_001378338.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp. Fw109-5] gi|187470964|sp|A7H9F8|PNP_ANADF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|152027586|gb|ABS25354.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp. Fw109-5] Length = 722 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 89/248 (35%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR E +R+I+ + GS L G+T L TL G + Sbjct: 324 RIGGRGEADIRKITSEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G + RALR V+ + I D Sbjct: 384 RFMLHYNFPPFSVGEVKFLRSPGRREIGHG----ALAERALRQVMPPEDKFPYTVRIVSD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 +++++G + A++ G ++L D +K VA I+ G++ G Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIKEGEKIAI 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A D ++ Sbjct: 487 LSDILGDEDHLGDMDFKVCGTAEG-ITSIQMDIKIGGVTREILERALAQAADGRKHILGE 545 Query: 234 QKDVISNE 241 I+ Sbjct: 546 MAKAIATP 553 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 86/234 (36%), Gaps = 30/234 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 EI L V+K A GS V+ GD+ +L T +E + + + G +P Sbjct: 14 EILLETGKVAKQAHGSVWVRMGDSIVLVTVVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ +RE GR + R++ R+ R + QII + T Sbjct: 74 ---GSFFRRE---GRPTEKETLTSRIVDRSCRPLFAEGYPNETQIIATVISFDQENDTDV 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA ALH G +A + G + G + + + Sbjct: 128 LALTGASAALH-------------LSDIPFNGPIAGVRVGRVNGQFVANPTLA--QRAEA 172 Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + +M S IV V+G A+ S+ L + + +L+ Q D + Sbjct: 173 DLDVIMAASRDAIVMVEGGAKE--VSEQVMVDALLFGQAAVRELLDAQ-DALRK 223 >gi|149371588|ref|ZP_01891004.1| polynucleotide phosphorylase/polyadenylase [unidentified eubacterium SCB49] gi|149355215|gb|EDM43775.1| polynucleotide phosphorylase/polyadenylase [unidentified eubacterium SCB49] Length = 739 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 20/241 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56 +RL GR+ +++R+I GS + G+T L T TL Sbjct: 317 LRLDGRKTDEVRDIWCEIDYLPSVHGSAVFTRGETQALATVTLGTSRDANKIDMPSYEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + R L+ ++ + + Sbjct: 377 ENFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRGLKGMIPED--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +A+ D M + + G ++ G + D Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAM-----GLISDAETGKYA--VLTD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I Q + S + + L A+D L L+K Sbjct: 484 ILGDEDYLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVSALKQARDG--RLHILEKI 540 Query: 237 V 237 V Sbjct: 541 V 541 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REI++ K A GS +V+ G LL T ++ +P + A G P Sbjct: 16 REITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDLPFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + + Q++I D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKNYSAETQVMIQLMSHDDD----- 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D + + + + ++ G + G I++ + D+ Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECAISEARVGRVDGKFIINPTRAQLEESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + + ++ V+G E S++ + A + I I Q Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMIEAIKFAHEAIKVQIDAQ 220 >gi|256544705|ref|ZP_05472077.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis ATCC 51170] gi|256399594|gb|EEU13199.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis ATCC 51170] Length = 702 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 98/251 (39%), Gaps = 29/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK- 55 +R GR+ +++R +S + A GS L + G T +L+ T EE+V + + Sbjct: 311 IRPDGRKMDEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370 Query: 56 -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 +I +Y P G+ R+ G + RAL V+ + I + Sbjct: 371 TKRYIH-QYNFPPFCVGDIRPLRGPGRREVGHGH----LAERALIPVLPDTNDFPYTIRV 425 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172 +V+ ++G + A+I G+ ++L D +K VA I+ G++ Sbjct: 426 VSEVLSSNGSSSQASICGSTLSLMDAGV-------------PIKKPVAGIAMGLIKEENS 472 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G I +Q + + +++ L A ++ Sbjct: 473 ISILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDMKISGINKEVLQEALADAHKARLEI 531 Query: 231 IKLQKDVISNE 241 + + I Sbjct: 532 LDVITSAIDKP 542 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 84/223 (37%), Gaps = 27/223 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 ++S+T V++ G CL++ GDT LL TA E + + + G +P Sbjct: 14 DLSITIGKVAEQTNGECLIRTGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE G+ ++ I R + R LR + + Q+I + D Sbjct: 74 ---GGFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDC 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 GA +AL G VAA+S G + G IV+ + E + Sbjct: 128 MTTIGASIAL-------------GISDIPFYGPVAAVSVGYVDGKFIVNPNKDEREISSL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 D T I V+ A S+D + +A I ++ Sbjct: 175 DLTVAGTADA-INMVEAGANE--LSEDEMLEAMMVAHAEIKEI 214 >gi|153835027|ref|ZP_01987694.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01] gi|148868504|gb|EDL67603.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01] Length = 710 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E T +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELDTSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+S ++ +E +++ + + D+ +IK + Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222 >gi|313681466|ref|YP_004059204.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313154326|gb|ADR33004.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 725 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 85/240 (35%), Gaps = 23/240 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGW 58 +R GR N++R IS+ V A S L G T L TL + M+ T G Sbjct: 342 VRADGRALNEVRPISIETNVLPSAHASALFTRGQTQALVVLTLGGAKDAQMFENLTDSGT 401 Query: 59 ----ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G A R+ G + RAL + + I + Sbjct: 402 QNEGFMVHYNFPGFSVGEPSPIGAPRRRELGHG----NLAKRALEGACVRN---GQTIRL 454 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 +V++++G + A + G ++AL + D + V +G AI + Sbjct: 455 VSEVLESNGSSSMATVCGGYMALRAGDIEVADPIAGVAMGMVQEGSRHAI---------L 505 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D G I +Q + D L AK+ + +I + Sbjct: 506 TDIMGLEDHDGDLDFKVA-GSKGGITAMQMDIKLGGIHLDVLKEALYQAKEARSHIIDIM 564 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 26/212 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75 V+ A G+ +K GDT +L T ++E + +T +Y + G +K Sbjct: 21 VAAQANGAAWLKCGDTVILATVVIDETD---FVDEDFLPLTVQYIEKSYAAGKFPGGFIK 77 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE + R++ R+LR + QI + V+ AD R A + + Sbjct: 78 RET---KPSDFETLTSRIVDRSLRPLFPKGFANPVQITV--MVLSAD---READLQVLAL 129 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 ++ D + V+A+ G + G + + + +D + Sbjct: 130 NAASAALYVSDID--------IFNSVSAVRVGKIDGEIVFNPTLSQLQKSTLDLYLAGSK 181 Query: 196 SGHI-VEVQ--GSAERATFSQDHFFAMLNLAK 224 + +E+Q GS E +++ A Sbjct: 182 EDMLMIEMQTLGSDEVEILDIGIIDPLVDPAM 213 >gi|260775173|ref|ZP_05884071.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260608874|gb|EEX35036.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 710 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 78/234 (33%), Gaps = 35/234 (14%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E T +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T+ G ++ V+ +E +++ + + D Q+ V+ N + Sbjct: 178 LVVAGTE-GAVLMVE--SEADNLTEEEMLSAVVYGHD--------QQQVVINAI 220 >gi|215488482|ref|YP_002330913.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O127:H6 str. E2348/69] gi|254782721|sp|B7UJ59|PNP_ECO27 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|215266554|emb|CAS10993.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O127:H6 str. E2348/69] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPNGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|156975660|ref|YP_001446567.1| polynucleotide phosphorylase/polyadenylase [Vibrio harveyi ATCC BAA-1116] gi|187611334|sp|A7MZI2|PNP_VIBHB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|156527254|gb|ABU72340.1| hypothetical protein VIBHAR_03393 [Vibrio harveyi ATCC BAA-1116] Length = 710 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELEASKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+S ++ +E +++ + + D+ +IK + Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222 >gi|150003997|ref|YP_001298741.1| polynucleotide phosphorylase/polyadenylase [Bacteroides vulgatus ATCC 8482] gi|187470937|sp|A6L0A5|PNP_BACV8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|149932421|gb|ABR39119.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus ATCC 8482] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 RL GR+ ++R I GS + G+T LT+ TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAG--YPYTVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 433 IMESNGSSSMATVCAGTLALMDAGVAM-------------KKPVSGIAMGLIKNAGEEKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK+ ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 NKLTECIAEP 548 Score = 89.0 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ RALR + + + ++ + Sbjct: 66 EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIVLFS 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG + + D L + + G ++ + + G +++ + Sbjct: 121 ADG-----------IDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFE 169 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ A + A + I K Q +++ Sbjct: 170 QLEKADMDLMVAATYD-NIMMVEG--EMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEE 226 >gi|323491486|ref|ZP_08096669.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG 20546] gi|323314270|gb|EGA67351.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG 20546] Length = 710 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNEG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 70/217 (32%), Gaps = 27/217 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E T +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 T+S ++ +E +++ A + D Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVYGHD 211 >gi|260584718|ref|ZP_05852464.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans ATCC 700633] gi|260157741|gb|EEW92811.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans ATCC 700633] Length = 701 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T LT+AT E +V + + Sbjct: 318 VRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQVIDGLGIEEG 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + +G G R + RAL+ V+ I + Sbjct: 378 KRFIHHYNFPQFSVGSVGR----AGSPGRREIGHGALGERALKQVIPTPEDFPYTIRLVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 434 EVLESNGSSSQASICAGTLALMAAGV-------------PIKAPVAGIAMGLISDGTNYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I +Q + ++ L AK ++++ Sbjct: 481 VLTDIQGLEDHLGDMDFKVAGTTTG-ITALQMDIKIQGITEQILREALTQAKKARFEILE 539 Query: 233 LQKDVISNE 241 I+ Sbjct: 540 ELTSTIAEP 548 Score = 84.8 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 89/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + + ++K A G+ LV++GDT +LT A ++T +T Y + Sbjct: 14 RLLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGT----KQAKDTDFFPLTVNYEEKMYAA 69 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G +KRE GR + R+I R +R + QI + + Sbjct: 70 GKIPGGFIKRE---GRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +AL G +A + G + G +++ + D Sbjct: 127 MAAMFGSSLALC-------------ISDIPFDGPIAGVDVGRVNGEYVINPTTEQAELSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ++ + T + I V+ SA+ S++ L + I L+ Q+ ++ Sbjct: 174 IELSVAGTATA-INMVESSAKE--VSEEDMLGALLFGHEEIKKLVAFQQQIV 222 >gi|167625054|ref|YP_001675348.1| polynucleotide phosphorylase/polyadenylase [Shewanella halifaxensis HAW-EB4] gi|257096707|sp|B0TQ97|PNP_SHEHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167355076|gb|ABZ77689.1| Polyribonucleotide nucleotidyltransferase [Shewanella halifaxensis HAW-EB4] Length = 704 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T Sbjct: 317 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGEYTN 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + I + Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPTAEEFPYSVRIVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALQQAYGARVHILNV 538 Query: 234 QKDVISNE 241 I + Sbjct: 539 MDQAIGSH 546 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + Q+II + + Sbjct: 77 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + + G + G I++ + ++ Sbjct: 132 SMIGTSAALSISGI-------------PFNGPLGSARVGYVNGEYILNPTVSQLVDSQLE 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 + TDS ++ +E + ++ + D+ I + +LQ +V Sbjct: 179 LSVAGTDSAVLMV---ESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEV 228 >gi|170765724|ref|ZP_02900535.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii TW07627] gi|170124870|gb|EDS93801.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii TW07627] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|328545912|ref|YP_004306021.1| polyribonucleotide nucleotidyltransferase [polymorphum gilvum SL003B-26A1] gi|326415652|gb|ADZ72715.1| Polyribonucleotide nucleotidyltransferase [Polymorphum gilvum SL003B-26A1] Length = 708 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 86/247 (34%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R I + A GS L G+T L ATL + T Sbjct: 316 RIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQGLVVATLGTGEDEQFVDALEGTYKA 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + + + Sbjct: 376 HFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAINPMLPAKHEFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G +AL D LK VA I+ G++ Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGV-------------PLKAPVAGIAMGLIKEGDRFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A++ ++ Sbjct: 479 LSDILGDEDHLGDMDFKVAGTAEG-ITSLQMDIKIQGITEEIMKVALEQAREGRVHILGE 537 Query: 234 QKDVISN 240 I+ Sbjct: 538 MSKAITE 544 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 29/228 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWITAEYGMLPRS 69 R + L V++ A+G+ + +G+T +L T + +E P +T Y + Sbjct: 14 RPLILETGKVARQADGAVMATYGETKVLATVVSAKEPKP----GQDFFPLTVNYQEKAFA 69 Query: 70 TG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 G KRE GR R+I R +R + Q+I+ + Sbjct: 70 AGKIPGGYFKRE---GRPSEHETLTSRLIDRPIRPLFAEGYKNDTQVIVTVLSHDMENAP 126 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A+ + AL G V G + G +++ D Sbjct: 127 DILALVASSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPLI--DDMP 171 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + ++ +G V + S E +D + +I Sbjct: 172 ESSLDLIVAGTGDAVLMVES-EAKELPEDVMLGAVMFGHSGFQTVIDA 218 >gi|312968497|ref|ZP_07782706.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2362-75] gi|312286715|gb|EFR14626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2362-75] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|311277863|ref|YP_003940094.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae SCF1] gi|308747058|gb|ADO46810.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae SCF1] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL I + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQIIDEIMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTMEQFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PVKSAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILSV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGK 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTPEELKVSKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVYGHEQQQIVIQNINELVKEA 226 >gi|330909222|gb|EGH37736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AA86] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|257096728|sp|B7M072|PNP_ECO8A RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|257096720|sp|B7LR33|PNP_ESCF3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|325498747|gb|EGC96606.1| polynucleotide phosphorylase [Escherichia fergusonii ECD227] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|170018584|ref|YP_001723538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ATCC 8739] gi|189037305|sp|B1IQV7|PNP_ECOLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169753512|gb|ACA76211.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC 8739] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGIMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|170682265|ref|YP_001745438.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli SMS-3-5] gi|191172253|ref|ZP_03033796.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11] gi|237706083|ref|ZP_04536564.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 3_2_53FAA] gi|293406776|ref|ZP_06650702.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli FVEC1412] gi|298382516|ref|ZP_06992113.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FVEC1302] gi|306816492|ref|ZP_07450624.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101] gi|331659453|ref|ZP_08360395.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206] gi|331684813|ref|ZP_08385405.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299] gi|187610330|sp|A1AG69|PNP_ECOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610331|sp|Q0TCU5|PNP_ECOL5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610332|sp|Q8FD87|PNP_ECOL6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610333|sp|Q1R6H4|PNP_ECOUT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702650|sp|B1LFR6|PNP_ECOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096724|sp|B7MB85|PNP_ECO45 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096727|sp|B7N0U9|PNP_ECO81 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096730|sp|B7NDF0|PNP_ECOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|170519983|gb|ACB18161.1| polyribonucleotide nucleotidyltransferase [Escherichia coli SMS-3-5] gi|190907563|gb|EDV67159.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11] gi|222034883|emb|CAP77626.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli LF82] gi|226899123|gb|EEH85382.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 3_2_53FAA] gi|291426782|gb|EFE99814.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli FVEC1412] gi|294490926|gb|ADE89682.1| polyribonucleotide nucleotidyltransferase [Escherichia coli IHE3034] gi|298277656|gb|EFI19172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FVEC1302] gi|305850057|gb|EFM50516.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101] gi|307625235|gb|ADN69539.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UM146] gi|320194650|gb|EFW69280.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli WV_060327] gi|323189213|gb|EFZ74497.1| polyribonucleotide nucleotidyltransferase [Escherichia coli RN587/1] gi|323951316|gb|EGB47191.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H252] gi|323957687|gb|EGB53401.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H263] gi|323966346|gb|EGB61780.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M863] gi|323979117|gb|EGB74195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TW10509] gi|327251945|gb|EGE63631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli STEC_7v] gi|331054035|gb|EGI26064.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206] gi|331078428|gb|EGI49634.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|145698316|ref|NP_417633.4| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K-12 substr. MG1655] gi|157162649|ref|YP_001459967.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HS] gi|194438823|ref|ZP_03070909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1] gi|238902268|ref|YP_002928064.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli BW2952] gi|253772000|ref|YP_003034831.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038330|ref|ZP_04872388.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43] gi|256024260|ref|ZP_05438125.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 4_1_40B] gi|297517605|ref|ZP_06935991.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli OP50] gi|301025991|ref|ZP_07189473.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 196-1] gi|307139851|ref|ZP_07499207.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli H736] gi|1172545|sp|P05055|PNP_ECOLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610300|sp|A8A4Y0|PNP_ECOHS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096729|sp|B1XGX6|PNP_ECODH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|259534118|sp|C4ZSQ5|PNP_ECOBW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145693187|gb|AAC76198.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K-12 substr. MG1655] gi|157068329|gb|ABV07584.1| polyribonucleotide nucleotidyltransferase [Escherichia coli HS] gi|194422295|gb|EDX38296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1] gi|226839954|gb|EEH71975.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43] gi|238862078|gb|ACR64076.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli BW2952] gi|253323044|gb|ACT27646.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260447807|gb|ACX38229.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli DH1] gi|299879886|gb|EFI88097.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 196-1] gi|313848762|emb|CAQ33499.2| polynucleotide phosphorylase monomer, subunit of polynucleotide phosphorylase and degradosome [Escherichia coli BL21(DE3)] gi|315137752|dbj|BAJ44911.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli DH1] gi|323936140|gb|EGB32434.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1520] gi|323961064|gb|EGB56679.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H489] gi|323970271|gb|EGB65542.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA007] gi|332345121|gb|AEE58455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNK88] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|332086104|gb|EGI91266.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 5216-82] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|293412539|ref|ZP_06655262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354] gi|291469310|gb|EFF11801.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|217035382|pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase Length = 723 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 321 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 380 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 381 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 436 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 482 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 483 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 541 Query: 233 LQKDVIS 239 + + I+ Sbjct: 542 VMEQAIN 548 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 22 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 78 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 79 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 135 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 136 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 182 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 183 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 232 >gi|193067267|ref|ZP_03048235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E110019] gi|192959224|gb|EDV89659.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E110019] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKKA 226 >gi|157158403|ref|YP_001464640.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli E24377A] gi|187775793|ref|ZP_02798176.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188024828|ref|ZP_02774262.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4113] gi|188495596|ref|ZP_03002866.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638] gi|189010332|ref|ZP_02806314.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189401923|ref|ZP_02779152.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189403294|ref|ZP_02794589.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4486] gi|189404087|ref|ZP_02787137.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189404797|ref|ZP_02811056.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC869] gi|189405568|ref|ZP_02822772.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC508] gi|193061952|ref|ZP_03043048.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22] gi|194427762|ref|ZP_03060309.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171] gi|194433724|ref|ZP_03065999.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae 1012] gi|195938384|ref|ZP_03083766.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. EC4024] gi|208809595|ref|ZP_03251932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208812895|ref|ZP_03254224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208818367|ref|ZP_03258687.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209397723|ref|YP_002272635.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4115] gi|217327602|ref|ZP_03443685.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. TW14588] gi|254795115|ref|YP_003079952.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. TW14359] gi|256018916|ref|ZP_05432781.1| polynucleotide phosphorylase/polyadenylase [Shigella sp. D9] gi|261228176|ref|ZP_05942457.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. FRIK2000] gi|261255032|ref|ZP_05947565.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. FRIK966] gi|293449501|ref|ZP_06663922.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088] gi|307313129|ref|ZP_07592755.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W] gi|187610299|sp|A7ZS61|PNP_ECO24 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610334|sp|Q8X9M3|PNP_ECO57 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611306|sp|Q3YX77|PNP_SHISS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702649|sp|B5YS54|PNP_ECO5E RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096725|sp|B7LH99|PNP_ECO55 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096726|sp|B7NKN3|PNP_ECO7I RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096731|sp|B6I1N9|PNP_ECOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157080433|gb|ABV20141.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E24377A] gi|187770877|gb|EDU34721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188016356|gb|EDU54478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4113] gi|188490795|gb|EDU65898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638] gi|189001076|gb|EDU70062.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189358585|gb|EDU77004.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189361407|gb|EDU79826.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4486] gi|189367622|gb|EDU86038.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189374178|gb|EDU92594.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC869] gi|189379858|gb|EDU98274.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC508] gi|192932172|gb|EDV84770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22] gi|194414270|gb|EDX30545.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171] gi|194417987|gb|EDX34081.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae 1012] gi|208729396|gb|EDZ78997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208734172|gb|EDZ82859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208738490|gb|EDZ86172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209159123|gb|ACI36556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC4115] gi|217319969|gb|EEC28394.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. TW14588] gi|254594515|gb|ACT73876.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. TW14359] gi|291322591|gb|EFE62020.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088] gi|306907040|gb|EFN37548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W] gi|315062472|gb|ADT76799.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W] gi|320181440|gb|EFW56358.1| Polyribonucleotide nucleotidyltransferase [Shigella boydii ATCC 9905] gi|320189518|gb|EFW64177.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320202078|gb|EFW76653.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli EC4100B] gi|320640236|gb|EFX09808.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. G5101] gi|320645533|gb|EFX14542.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H- str. 493-89] gi|320650843|gb|EFX19300.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H- str. H 2687] gi|320656224|gb|EFX24136.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661914|gb|EFX29322.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7 str. USDA 5905] gi|320666749|gb|EFX33728.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. LSU-61] gi|323162858|gb|EFZ48693.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E128010] gi|323165122|gb|EFZ50912.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 53G] gi|323376940|gb|ADX49208.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KO11] gi|323941734|gb|EGB37913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E482] gi|323946980|gb|EGB42996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H120] gi|324119531|gb|EGC13413.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1167] gi|326337866|gb|EGD61700.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. 1125] gi|326347435|gb|EGD71160.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7 str. 1044] Length = 711 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|300918919|ref|ZP_07135478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 115-1] gi|300413945|gb|EFJ97255.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 115-1] Length = 734 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAQLLSEDQMLCAVVFGHEQQQVVIQNINELVKEA 249 >gi|91203627|emb|CAJ71280.1| stronly similar to polynucleotide phosphorylase (PNPase) [Candidatus Kuenenia stuttgartiensis] Length = 705 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 88/250 (35%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R R +R I+ + GS L G+T + TL E+KV + + Sbjct: 315 LRPDSRGLKDIRPITCEVGILPRVHGSALFTRGETQAIVVVTLGTTSDEQKVDG-LEDEY 373 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +Y P G R+ G + RAL V+ + Sbjct: 374 SKKFMLDYNFPPFCVGETKPLRGPGRREIGHG----ALAERALAEVLPPPNKFPYTTRVV 429 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 D+ +++G + A++ G +AL D +K VA I+ G++ V Sbjct: 430 SDITESNGSSSMASVCGGTLALMDAGV-------------PIKAPVAGIAMGLVKEENSV 476 Query: 176 ----DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 D+ ED D+D T G + +Q + A ++ L A++ ++ Sbjct: 477 CILSDILGTEDHLGDMDFKVAGTAQG-VTALQMDIKIAGITEKIMRDALAQAREGRLHIL 535 Query: 232 KLQKDVISNE 241 + + VI Sbjct: 536 QELEKVIEKP 545 Score = 90.2 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 31/236 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL--EEK--VPMWIRNTKHGWITAEYGML 66 R +S+ V++ A+G+ LV++G+T +L TA EEK V + T G Sbjct: 13 RALSIETGRVARQADGAVLVQYGETIVLVTAVSASEEKGNVDFLPLTVDYREKTYAAGKF 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + + Q + V+ AD Sbjct: 73 P---GGFFKRE---GRPSQKEILTMRLIDRPIRPLFPDTYFREVQ--VMSIVLSADKEND 124 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ GA AL S ++ G + I++ + E + Sbjct: 125 PDILAMVGASAALS-------------ISSIPFCKPTGSVRVGQIEEKFIINPTHAELAQ 171 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T+ ++ V+ SA+ ++ + I ++I LQ ++I Sbjct: 172 SSMDIVISGTEDA-VMMVEASAKEIP--EEQMVDAIMFGHAAIKEIITLQHELIEK 224 >gi|110636259|ref|YP_676467.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium sp. BNC1] gi|123161513|sp|Q11BC3|PNP_MESSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110287243|gb|ABG65302.1| 3' exoribonuclease [Chelativorans sp. BNC1] Length = 715 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ GR +R I V GS + G+T L ATL ++ G + Sbjct: 317 RIDGRDLRSVRPIVAEVGVLPRTHGSAVFTRGETQALVVATLGTGEDEQYVDSLTGTVKE 376 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ I + + Sbjct: 377 TFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVHPLLPAPEQFPYTIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + + A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G + +Q + +++ L AKD ++ + Sbjct: 484 LGDEDHLGDMDFKVAGTAEG-VTSLQMDIKITGITEEIMKVALEQAKDGRLHILGEMANA 542 Query: 238 ISN 240 +S Sbjct: 543 LSE 545 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 46/240 (19%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + + T G + Sbjct: 14 RPLILETGKIARQADGAVLATYGETVVLATVVSAKEPKPGIDFFPLTVNYQEKTFAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + Q+II V+Q D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGYKNDTQVIIT--VLQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G V A G + G I++ E Sbjct: 126 PDILSMVAASAAL-------------TLSGVPFMGPVGAARVGYVGGEYILNPHLDE--M 170 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229 + + V+ + V + S E +D A++ LA+ + Sbjct: 171 AETKLDLVVAGTSDAVLMVES-EAHELPEDVMLGAVMFGHRNFQPVIDAIIKLAEVAAKE 229 >gi|66356472|ref|XP_625414.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II] gi|46226443|gb|EAK87443.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II] Length = 351 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 50/266 (18%) Query: 1 MRLSGRQENQMREISL------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT 54 +R GR+ ++R I R + +G+ + G L+ + + I T Sbjct: 98 IRQDGRKLTEIRRIKCIINEGNQRGIE---DGNVYFEQGQNKLIVSIVGPVPISGNINYT 154 Query: 55 KHG---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111 + I + + P S+ +R KR G+ E +I R SV+ Q Sbjct: 155 NNNSGVQINCNFRVSPFSSQDRRKR----GKNDRFCIESGLIISRTFSSVIC-DQYSKSQ 209 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 III+ +++ DG R+AAI +AL M+D + + +CG+ Sbjct: 210 IIINIIILEGDGSVRSAAINATSIALAISGISMKDL-------------IVSATCGLYGK 256 Query: 172 YPIVDLDYGE---------------DSTIDVDANFVMTDSGHI--VEVQGSAERATFSQD 214 + DL E D+ ID D V + I V + + + + Sbjct: 257 QVLYDLTQSEMESLKGTLLMAIHSTDNDIDTDTENVGNGNSDISPVTIDLNTK---LKPE 313 Query: 215 HFFAMLNLAKDRIADLIKLQKDVISN 240 ++N + +D + N Sbjct: 314 MIEFLMNETFSACKQFSVIIRDFLKN 339 >gi|110643405|ref|YP_671135.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 536] gi|117625460|ref|YP_858783.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC O1] gi|218560236|ref|YP_002393149.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88] gi|218691456|ref|YP_002399668.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a] gi|227887888|ref|ZP_04005693.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972] gi|300977831|ref|ZP_07174071.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 200-1] gi|300990763|ref|ZP_07179335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 45-1] gi|301047994|ref|ZP_07195036.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 185-1] gi|331654770|ref|ZP_08355770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718] gi|110344997|gb|ABG71234.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 536] gi|115514584|gb|ABJ02659.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC O1] gi|218367005|emb|CAR04776.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88] gi|218429020|emb|CAR09967.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a] gi|227835284|gb|EEJ45750.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972] gi|300300137|gb|EFJ56522.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 185-1] gi|300308208|gb|EFJ62728.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 200-1] gi|300407071|gb|EFJ90609.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 45-1] gi|307555260|gb|ADN48035.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ABU 83972] gi|312947723|gb|ADR28550.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O83:H1 str. NRG 857C] gi|315288934|gb|EFU48332.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 110-3] gi|315294909|gb|EFU54248.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 153-1] gi|315297884|gb|EFU57154.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 16-3] gi|324008763|gb|EGB77982.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 57-2] gi|324012110|gb|EGB81329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 60-1] gi|331048152|gb|EGI20229.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718] Length = 734 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|62181793|ref|YP_218210.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616288|ref|YP_001590253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224585080|ref|YP_002638879.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910077|ref|ZP_04653914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|15029403|gb|AAK81870.1|AF399929_1 polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|62129426|gb|AAX67129.1| polynucleotide phosphorylase, member of mRNA degradosome [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365652|gb|ABX69420.1| hypothetical protein SPAB_04093 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224469608|gb|ACN47438.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|312914308|dbj|BAJ38282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087729|emb|CBY97493.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225966|gb|EFX51020.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615287|gb|EFY12208.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618354|gb|EFY15245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622841|gb|EFY19685.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626837|gb|EFY23634.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631406|gb|EFY28166.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635327|gb|EFY32041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643462|gb|EFY40025.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647102|gb|EFY43603.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648905|gb|EFY45350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655097|gb|EFY51408.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657700|gb|EFY53968.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664196|gb|EFY60394.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667479|gb|EFY63641.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674727|gb|EFY70819.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675640|gb|EFY71713.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682276|gb|EFY78299.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684879|gb|EFY80877.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716280|gb|EFZ07851.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131642|gb|ADX19072.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323199033|gb|EFZ84130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204267|gb|EFZ89276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207614|gb|EFZ92561.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211333|gb|EFZ96177.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214725|gb|EFZ99474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221205|gb|EGA05631.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224054|gb|EGA08347.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230297|gb|EGA14416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233273|gb|EGA17367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239310|gb|EGA23360.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242439|gb|EGA26465.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246949|gb|EGA30915.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254118|gb|EGA37938.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255235|gb|EGA39012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262698|gb|EGA46254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264008|gb|EGA47516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269394|gb|EGA52849.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625033|gb|EGE31378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629307|gb|EGE35650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 721 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 440 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 486 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 487 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 545 Query: 233 LQKDVIS 239 + + I+ Sbjct: 546 VMEQAIN 552 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 82 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 83 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I + L K+ Sbjct: 187 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 236 >gi|222147153|ref|YP_002548110.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium vitis S4] gi|254782700|sp|B9JYL0|PNP_AGRVS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|221734143|gb|ACM35106.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis S4] Length = 714 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I + GS L G+T + ATL ++ G Sbjct: 316 RIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSPEQFPYTLRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + +L+G A+ + D+ Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV---------LSDI 482 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A +++ L A++ ++ + Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALAQAQNGRKHILGEMANA 541 Query: 238 ISN 240 I+ Sbjct: 542 ITE 544 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 76/229 (33%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L +++ A+G+ L +G+T +L T + + + + T G + Sbjct: 14 RPLKLETGKIARQADGAVLASYGETVVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + Q+++ VIQ D Sbjct: 74 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G V G + G +++ E Sbjct: 126 PDVLSMVAASAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E ++D + +I Sbjct: 173 SVLDLVVAGTQDAVLMV---ESEAKELNEDVMLGAVMFGHRGFQPVIDA 218 >gi|254446979|ref|ZP_05060446.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium HTCC5015] gi|198263118|gb|EDY87396.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium HTCC5015] Length = 698 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ V GS L G+T L TL + + + G Sbjct: 316 RIDGRDTRTVRPISVKTGVLPRTHGSALFTRGETQALVVTTLGTERDAQLIDDLAGEYKD 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R +++V+ I + Sbjct: 376 NFLFHYNFPPYCVGETGFIGSPKRREIGHG----KLAKRGVQAVMPAQDDFPYTIRAVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G+ +A+ D LK VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLAMMDAGV-------------PLKAPVAGIAMGLIKEGDQFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D TD G + +Q + +++ L AK Sbjct: 479 LTDILGDEDHLGDMDFKVAGTD-GGVTALQMDIKIQGITREIMAQALEEAKAG 530 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 86/235 (36%), Gaps = 28/235 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 +++ V++ A GS +V DT +L TAT ++ + + T G +P Sbjct: 14 PVTIETGEVARQATGSVIVNMNDTVVLVTATGRKEAKPDQAFFPLTVNYQEKTYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G+ KRE GR + R+I R +R + + QI+ + + Sbjct: 74 ---GSFFKRE---GRPSEKETLTARLIDRPIRPLFPKGFMNEVQIVATVVSLNPEVDPEV 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ G AL G + A G G +++ + T D+ Sbjct: 128 PAMIGTSAALSISGI-------------PFDGPIGAAQVGYRDGEYLLNPSKTDLETSDL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T+ ++ +E S+D + +++ +++ K+ ++ EV Sbjct: 175 ALTVAGTEDAVLMV---ESEANCLSEDIMLGAVMFGHEKMQAVVQAVKE-LAEEV 225 >gi|281180208|dbj|BAI56538.1| polynucleotide phosphorylase [Escherichia coli SE15] Length = 734 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|254516613|ref|ZP_05128672.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium NOR5-3] gi|219675036|gb|EED31403.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium NOR5-3] Length = 704 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 89/247 (36%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I+ V A GS L G+T + TL I + G Sbjct: 314 RIDGRDTRTVRQIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTRDAQIIDALEGERRD 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + S R+ G R+ R L +V+ DL I + Sbjct: 374 PFMLHYNFPPYSVGEAGRVGFTSRREIGHG----RLARRGLAAVLPDLEEFP-YTIRVVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ +A+ LK VA I+ G++ Sbjct: 429 EITESNGSSSMASVCVGSLAMMTAGV-------------PLKAPVAGIAMGLVKEGNQFA 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G + +Q + ++ L A ++ Sbjct: 476 VLTDILGDEDHLGDMDFKVAGTANG-VTALQMDIKIEGITEQIMEIALEQAMQARLHILG 534 Query: 233 LQKDVIS 239 V++ Sbjct: 535 QMNAVLA 541 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 79/232 (34%), Gaps = 34/232 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ LV +T +L T E E + + G +P Sbjct: 15 VTLETGRIARQASGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAVHYIEKAYSVGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 G KREA R + R+I R +R + + Q+I C V+ AD Sbjct: 74 --GGFFKREA---RPSEKETLTSRLIDRPIRPLFPNGFMNEVQVI--CTVMSADKHIDPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 A+ G AL G + A G I++ Y + Sbjct: 127 IPAMIGTSAALA-------------ISGCPFNGPIGAARVGFNDAEGYILNPTYDQLPGS 173 Query: 186 DVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ T+ + VE Q ++D + A + +IK ++ Sbjct: 174 KLEMVVAGTEDAVLMVESQADQ----LTEDQMLGAVLFAHQEMQVVIKAVQE 221 >gi|331648965|ref|ZP_08350053.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605] gi|331042712|gb|EGI14854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605] Length = 734 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|255534604|ref|YP_003094975.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae bacterium 3519-10] gi|255340800|gb|ACU06913.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae bacterium 3519-10] Length = 780 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 77/231 (33%), Gaps = 20/231 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55 +RL GR +R I A GS + G+T LT TL V N Sbjct: 320 IRLDGRTPETIRPIWSEVDYLPGAHGSAVFTRGETQSLTAVTLGSVKDANMVDSVAINYD 379 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + Y P STG S R+ G + RAL ++ I I Sbjct: 380 EKFF-LHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALSRIIPAE--NPYTIRIV 432 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 D+++++G + A + +AL D + + + V + + Sbjct: 433 SDILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAMGLVTDPESGKFTV-------LS 485 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 D+ ED D+D T G I Q + S D L A++ Sbjct: 486 DILGDEDHLGDMDFKVTGTADG-ITACQMDIKIQGLSMDIMETALKQAREG 535 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 83/237 (35%), Gaps = 30/237 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 REI++ K A GS +V+ G T LL T V + G + Sbjct: 17 REITIETGKLAKQANGSVVVRMGGTMLLATVVANKDASPGVDFLPLTVDYREKFYSGGKI 76 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P GN +REA R R++ R LR + Q++I +I D Sbjct: 77 P---GNFFRREA---RPSDEEILTMRLVDRVLRPLFPDDFHAEVQVMIS--LISYD---- 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + + L + + G ++ ++ + G +V+ E+ Sbjct: 125 -------KECMPEALAGLAASAAIAITDIPFNGPMSEVTVARIDGQLVVNPS-RENLD-K 175 Query: 187 VDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D N V IV V+G + +++ + A + I ++ Q + ++ V Sbjct: 176 ADLNILVGATKDSIVMVEGVMDE--ITEEEMIEAIKFAHEEIKVQVEAQ-ERLAERV 229 >gi|218706786|ref|YP_002414305.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UMN026] gi|300897928|ref|ZP_07116307.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 198-1] gi|301022018|ref|ZP_07185961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 69-1] gi|331674702|ref|ZP_08375461.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280] gi|218433883|emb|CAR14800.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UMN026] gi|284923188|emb|CBG36282.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 042] gi|300358358|gb|EFJ74228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 198-1] gi|300397733|gb|EFJ81271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 69-1] gi|331068141|gb|EGI39537.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280] Length = 734 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|218555736|ref|YP_002388649.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1] gi|218362504|emb|CAR00128.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1] Length = 734 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|89109929|ref|AP_003709.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K-12 substr. W3110] gi|170082701|ref|YP_001732021.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K-12 substr. DH10B] gi|254163108|ref|YP_003046216.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str. REL606] gi|300929854|ref|ZP_07145300.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 187-1] gi|300955750|ref|ZP_07168095.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 175-1] gi|301644875|ref|ZP_07244847.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 146-1] gi|331643864|ref|ZP_08344995.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736] gi|606104|gb|AAA57967.1| polynucleotide phosphorylase [Escherichia coli str. K-12 substr. MG1655] gi|85675960|dbj|BAE77210.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K12 substr. W3110] gi|169890536|gb|ACB04243.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str. K-12 substr. DH10B] gi|253975009|gb|ACT40680.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str. REL606] gi|253979165|gb|ACT44835.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli BL21(DE3)] gi|300317383|gb|EFJ67167.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 175-1] gi|300462216|gb|EFK25709.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 187-1] gi|301076820|gb|EFK91626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 146-1] gi|309703592|emb|CBJ02932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ETEC H10407] gi|331037335|gb|EGI09559.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736] Length = 734 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|88797627|ref|ZP_01113216.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Reinekea sp. MED297] gi|88779799|gb|EAR10985.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Reinekea sp. MED297] Length = 706 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R+I + V A GS L G+T L T TL + K+ + T Sbjct: 319 RIDGRDGKTVRDIKVEVGVLPGAHGSALFTRGETQALVTTTLGTLRDGKMEDMLTGTITD 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R R+ R + +++ + + + + Sbjct: 379 NFMLHYNFPPFSVGEAGR----IGGVGRREIGHGRLAKRGVLAMMPNTDDFPYTVRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +A+ D +K VA I+ G++ Sbjct: 435 ITESNGSSSMASVCGASLAMMDAGV-------------PVKKPVAGIAMGLVKEGDKFTV 481 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G + +Q + +++ L A D +++ Sbjct: 482 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITEEIMEIALGQAMDARLHILRE 540 Query: 234 QKDVIS 239 VI Sbjct: 541 MAQVIG 546 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 73/220 (33%), Gaps = 29/220 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKF-GDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 ++++ V++ A GS + GDT +L T ++ + + + G + Sbjct: 17 DVTIETGRVARQATGSAICTMNGDTVVLATVVAKDSVSPGQDFFPLSVHYQEKFYSVGRI 76 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I R +R + + Q+II+ Sbjct: 77 P---GGYLKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIINVLSANKTDDPD 130 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 AA+ AL G + A G +++ + + T Sbjct: 131 IAAMLATSAALA-------------VSGVPFNGPIGAARVGYTDAEGYLLNPTFEQLETS 177 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 +D T ++ +E S+D + A Sbjct: 178 RLDMVVAGTQDAVLMV---ESEAQELSEDQMLGAVLFAHQ 214 >gi|213052977|ref|ZP_03345855.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425438|ref|ZP_03358188.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582311|ref|ZP_03364137.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609547|ref|ZP_03369373.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646150|ref|ZP_03376203.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289825796|ref|ZP_06544964.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 721 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 440 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 486 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 487 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 545 Query: 233 LQKDVIS 239 + + I+ Sbjct: 546 VMEQAIN 552 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 82 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 83 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I + L K+ Sbjct: 187 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 236 >gi|157962873|ref|YP_001502907.1| polynucleotide phosphorylase/polyadenylase [Shewanella pealeana ATCC 700345] gi|257096708|sp|A8H735|PNP_SHEPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157847873|gb|ABV88372.1| Polyribonucleotide nucleotidyltransferase [Shewanella pealeana ATCC 700345] Length = 704 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T Sbjct: 317 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGEYTN 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + I + Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPTAEEFPYSVRIVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALKQAYGARVHILDV 538 Query: 234 QKDVISNE 241 IS Sbjct: 539 MDRAISGH 546 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + Q+II + + Sbjct: 77 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + + G + G I++ + ++ Sbjct: 132 SMIGTSAALSISGI-------------PFNGPLGSARVGYVNGEYILNPTVSQLVDSQLE 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 + T+S ++ +E + ++ + D+ I + +LQ +V Sbjct: 179 LSVAGTESAVLMV---ESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEV 228 >gi|262363252|gb|ACY59973.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D106004] Length = 664 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + + GS L G+T L TATL + + Sbjct: 274 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 333 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ ++ I + + Sbjct: 334 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 389 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 390 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 436 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 437 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 495 Query: 234 QKDVISNE 241 + IS Sbjct: 496 MEQAISTP 503 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 19/150 (12%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G+ +RE GR R+I R +R + S L Q+I + A+ Sbjct: 34 GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIVAL 90 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL G + A G + +++ E +D Sbjct: 91 IGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLDLV 137 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S++ + Sbjct: 138 VAGT-AGAVLMVE--SEADILSEEQMLGAV 164 >gi|229900960|ref|ZP_04516084.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Nepal516] gi|187611438|sp|Q1CM51|PNP_YERPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|229682299|gb|EEO78391.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Nepal516] Length = 705 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + + GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ ++ I + + Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA L G + A G + +++ E +D Sbjct: 130 ALIGASAVLSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S++ + Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 205 >gi|114571589|ref|YP_758269.1| polynucleotide phosphorylase/polyadenylase [Maricaulis maris MCS10] gi|122314882|sp|Q0AK62|PNP_MARMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|114342051|gb|ABI67331.1| Polyribonucleotide nucleotidyltransferase [Maricaulis maris MCS10] Length = 710 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 90/247 (36%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +Q+R I + GS L G+T L ATL + T Sbjct: 317 RIDGRSLDQVRSIVSEAGILPRTHGSALFTRGETQALVVATLGTGEDEQFIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R A R+ G ++ RA+++V+ I + + Sbjct: 377 RFMLHYNFPPYSVGETSFRLAPGRREIGHG----KLAWRAVKAVLPTKEDFPYTIRLVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A + GA +++ D + V+ I+ G++ G + Sbjct: 433 ITESNGSSSMATVCGASLSMMDAGV-------------PITRPVSGIAMGLIKDPEGIAV 479 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + A ++ L A +++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTTEG-VTSLQMDIKIAGIDEEIMKTALAQASGGRLHILEE 538 Query: 234 QKDVISN 240 + Sbjct: 539 MGKALGE 545 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 27/227 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +++ V++ A+G+ +V +G+T +L TA + V + + G + Sbjct: 14 RPLTIETGRVARQADGAVMVSYGETTVLATAVGVKQAKPGVDFFPLTVNYQEKYFAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + Q+++ + Sbjct: 74 P---GGFFKRE---GRPTDKETLTSRLIDRPIRPLFVKGFKNEVQVMLTVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + GA AL G + A G G +++ E + Sbjct: 128 IVGMIGASAALVLSGL-------------PFMGPIGAARVGYKDGEYVINPPCDEMDDSE 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ V+ +E S++ + +I + Sbjct: 175 LDLVVAGTQDA-VMMVE--SEAKELSEEVMLGAVMAGHKAFQPVIDM 218 >gi|145600553|ref|YP_001164629.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Pestoides F] gi|153948233|ref|YP_001402546.1| polynucleotide phosphorylase/polyadenylase [Yersinia pseudotuberculosis IP 31758] gi|153997470|ref|ZP_02022570.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CA88-4125] gi|162418341|ref|YP_001608292.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Angola] gi|165925875|ref|ZP_02221707.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936694|ref|ZP_02225261.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|166010063|ref|ZP_02230961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166214313|ref|ZP_02240348.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|167420765|ref|ZP_02312518.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423666|ref|ZP_02315419.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025941|ref|YP_001722446.1| polynucleotide phosphorylase/polyadenylase [Yersinia pseudotuberculosis YPIII] gi|218930504|ref|YP_002348379.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis CO92] gi|229839142|ref|ZP_04459301.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896631|ref|ZP_04511798.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Pestoides A] gi|229899706|ref|ZP_04514847.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Orientalis str. India 195] gi|270489142|ref|ZP_06206216.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27] gi|294505190|ref|YP_003569252.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003] gi|123149978|sp|Q0WBF9|PNP_YERPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611335|sp|A4TQU4|PNP_YERPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611342|sp|A7FMR8|PNP_YERP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611439|sp|Q1C3L8|PNP_YERPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704837|sp|A9R5A9|PNP_YERPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704838|sp|B1JLX6|PNP_YERPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|115349115|emb|CAL22078.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CO92] gi|145212249|gb|ABP41656.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Pestoides F] gi|149289107|gb|EDM39187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CA88-4125] gi|152959728|gb|ABS47189.1| polyribonucleotide nucleotidyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162351156|gb|ABX85104.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Angola] gi|165915343|gb|EDR33953.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|165922487|gb|EDR39664.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165990970|gb|EDR43271.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166204545|gb|EDR49025.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|166961571|gb|EDR57592.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167057836|gb|EDR67582.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752475|gb|ACA69993.1| Polyribonucleotide nucleotidyltransferase [Yersinia pseudotuberculosis YPIII] gi|229687198|gb|EEO79273.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Orientalis str. India 195] gi|229695508|gb|EEO85555.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700409|gb|EEO88441.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Pestoides A] gi|262367183|gb|ACY63740.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038] gi|270337646|gb|EFA48423.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27] gi|294355649|gb|ADE65990.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003] gi|320016696|gb|ADW00268.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 705 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + + GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ ++ I + + Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 66.7 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S++ + Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 205 >gi|218550449|ref|YP_002384240.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii ATCC 35469] gi|218357990|emb|CAQ90636.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii ATCC 35469] Length = 734 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|85058359|ref|YP_454061.1| polynucleotide phosphorylase/polyadenylase [Sodalis glossinidius str. 'morsitans'] gi|123725447|sp|Q2NW19|PNP_SODGM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|84778879|dbj|BAE73656.1| polyribonucleotide nucleotidyltransferase [Sodalis glossinidius str. 'morsitans'] Length = 705 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 98/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ ++ + + + Sbjct: 375 RFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPNASEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + + + LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITHEIMQVALNQAKGARMHILGV 536 Query: 234 QKDVISNE 241 + IS+ Sbjct: 537 MERAISSP 544 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 65/217 (29%), Gaps = 27/217 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 +L + + A + + DT + T + + + T G P Sbjct: 16 FTLETGMMARQATAAVMASMDDTAVFVTVVGAKQAKTGQSFFPLTVNYQERTYAAGRFP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR I R+I R +R + L +I + Sbjct: 75 --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFLNEVHVIATVVSVNPQVSPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +T +D Sbjct: 130 AMIGASAALSLSGI-------------PFSGPIGAARVGYINDQYVLNPTQAELATSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 T + ++ +E S+D + D Sbjct: 177 LVVAGTQNAVLMV---ESEAQLLSEDQMLGAVVYGHD 210 >gi|83318937|emb|CAJ38806.1| polynucleotide phosphorylase protein [Platynereis dumerilii] Length = 628 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 90/250 (36%), Gaps = 16/250 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52 +R GR+ N++R I+ + GS + + G T +L T T + + + + Sbjct: 302 LRCDGRRLNEIRPINCGVDLFSPLHGSAMFQRGQTQVLCTVTFDSLDSAAKVDAITALMA 361 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K Y P +T + R+ G + +AL++V+ I Sbjct: 362 GMKEKNFFVHYEFPPYATNETGRTGFAGRRELGHG----ALAEKALKNVIPSDF--PFTI 415 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A + G +AL D K + G + + Sbjct: 416 RLSAEVLESNGSSSMATVCGGSLALMDAGSSKLRPKGSSLGVACGKWLTRSDDHGNVSDF 475 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 ++ DL ED D+D + T G + +Q + A + +++ Sbjct: 476 KVLTDLLGIEDYMGDMDFKYAGTSKG-VTALQADVKVPGLPLKVIMEAEERAWEGKTEIL 534 Query: 232 KLQKDVISNE 241 + + +S Sbjct: 535 SIMWNCLSQH 544 Score = 84.8 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 23/217 (10%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSG 81 ++A+GS KFG+T +L TA V + +Y + G R+ + Sbjct: 11 RFADGSITGKFGNTSVLVTA-----VSKGKSTNNFLPLMVDYRQKAAAAG-RIPTNHLRR 64 Query: 82 RQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139 G +E RMI R+LR + QI+ + + +I A AL Sbjct: 65 ELGPSDKETLTSRMIDRSLRPLFPSGYFVDTQIVCNLLAVDGQNDPDIVSINAASAALA- 123 Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199 G V A+ G + +++ E + D D + Sbjct: 124 ------------VSDIPRFGPVGAVRVGFVDNEIVINPTRREMAHSTXDLVVSAADQNKV 171 Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V ++ SA+ SQ +F + +I KD Sbjct: 172 VMLEASADG--ISQPNFRHAIKRGVKESQKIITAIKD 206 >gi|15803706|ref|NP_289740.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 EDL933] gi|15833299|ref|NP_312072.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O157:H7 str. Sakai] gi|74313701|ref|YP_312120.1| polynucleotide phosphorylase/polyadenylase [Shigella sonnei Ss046] gi|209920641|ref|YP_002294725.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli SE11] gi|218696871|ref|YP_002404538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989] gi|218701935|ref|YP_002409564.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39] gi|260845979|ref|YP_003223757.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O103:H2 str. 12009] gi|291284540|ref|YP_003501358.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7 str. CB9615] gi|293416598|ref|ZP_06659237.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185] gi|300817584|ref|ZP_07097800.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 107-1] gi|300823873|ref|ZP_07103997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 119-7] gi|300904350|ref|ZP_07122203.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 84-1] gi|300926097|ref|ZP_07141915.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 182-1] gi|300938074|ref|ZP_07152852.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 21-1] gi|301301780|ref|ZP_07207914.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 124-1] gi|301326413|ref|ZP_07219767.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 78-1] gi|331669993|ref|ZP_08370838.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271] gi|331679245|ref|ZP_08379917.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591] gi|12517775|gb|AAG58300.1|AE005545_2 polynucleotide phosphorylase; cytidylate kinase activity [Escherichia coli O157:H7 str. EDL933] gi|13363518|dbj|BAB37468.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. Sakai] gi|73857178|gb|AAZ89885.1| polynucleotide phosphorylase [Shigella sonnei Ss046] gi|209758378|gb|ACI77501.1| polynucleotide phosphorylase [Escherichia coli] gi|209758380|gb|ACI77502.1| polynucleotide phosphorylase [Escherichia coli] gi|209758382|gb|ACI77503.1| polynucleotide phosphorylase [Escherichia coli] gi|209758384|gb|ACI77504.1| polynucleotide phosphorylase [Escherichia coli] gi|209758386|gb|ACI77505.1| polynucleotide phosphorylase [Escherichia coli] gi|209913900|dbj|BAG78974.1| polynucleotide phosphorylase [Escherichia coli SE11] gi|218353603|emb|CAU99791.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989] gi|218371921|emb|CAR19777.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39] gi|257761126|dbj|BAI32623.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O103:H2 str. 12009] gi|290764413|gb|ADD58374.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7 str. CB9615] gi|291431954|gb|EFF04937.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185] gi|300403701|gb|EFJ87239.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 84-1] gi|300417862|gb|EFK01173.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 182-1] gi|300456934|gb|EFK20427.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 21-1] gi|300523641|gb|EFK44710.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 119-7] gi|300529882|gb|EFK50944.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 107-1] gi|300842761|gb|EFK70521.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 124-1] gi|300846902|gb|EFK74662.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 78-1] gi|315257090|gb|EFU37058.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 85-1] gi|324018312|gb|EGB87531.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 117-3] gi|331062906|gb|EGI34820.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271] gi|331073310|gb|EGI44633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591] Length = 734 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|300948813|ref|ZP_07162881.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 116-1] gi|300451702|gb|EFK15322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 116-1] Length = 734 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|261253862|ref|ZP_05946435.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP 102891] gi|260937253|gb|EEX93242.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP 102891] Length = 710 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T + TATL + + + Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ LN A+ ++ + Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNDG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537 Query: 234 QKDVISN 240 + IS Sbjct: 538 MDEAISG 544 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 17 VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + + Q+I + D Sbjct: 76 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDMV 130 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + G +++ E +T +D Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELATSKLD 177 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T+ G ++ V+ +E +++ + + Sbjct: 178 LVVAGTE-GAVLMVE--SEADNLTEEEMLSAV 206 >gi|26249747|ref|NP_755787.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli CFT073] gi|91212585|ref|YP_542571.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UTI89] gi|26110175|gb|AAN82361.1|AE016767_121 Polyribonucleotide nucleotidyltransferase [Escherichia coli CFT073] gi|91074159|gb|ABE09040.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UTI89] Length = 740 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 344 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 403 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 404 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 458 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 459 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 505 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 506 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 564 Query: 233 LQKDVIS 239 + + I+ Sbjct: 565 VMEQAIN 571 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 45 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 101 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 102 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 158 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 159 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 205 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 206 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 255 >gi|290473451|ref|YP_003466318.1| polynucleotide phosphorylase, has polyadenylase activity [Xenorhabdus bovienii SS-2004] gi|289172751|emb|CBJ79522.1| polynucleotide phosphorylase, has polyadenylase activity [Xenorhabdus bovienii SS-2004] Length = 714 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHG 57 R+ GR+++ +R + + V GS L G+T L ATL + V + + Sbjct: 319 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQVIDELMGERAD 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + I + + Sbjct: 379 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTANEFPYTIRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 435 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 481 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + + + LN AK ++ + Sbjct: 482 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITSEIMQVALNQAKGARLHILGV 540 Query: 234 QKDVISNE 241 + I + Sbjct: 541 MEQAIQSP 548 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 71/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 +++ + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKK---MKAGQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR G + R+I R LR + L QII + Sbjct: 73 IPGSFFRRE---GRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNPLVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALALSGI-------------PFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ AE +++ + Sbjct: 177 LVVAGT-AGAVLMVESEAE--LLTEEQMLGAV 205 >gi|16766580|ref|NP_462195.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415214|ref|YP_152289.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364144|ref|YP_002143781.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205354186|ref|YP_002227987.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858532|ref|YP_002245183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|81361497|sp|Q5PL97|PNP_SALPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81521548|sp|Q8ZLT3|PNP_SALTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611314|sp|A9N728|PNP_SALPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611318|sp|Q57JI3|PNP_SALCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702684|sp|B5QZV4|PNP_SALEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702685|sp|B5REN2|PNP_SALG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702686|sp|B5BGJ1|PNP_SALPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096718|sp|C0PZ50|PNP_SALPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|16421841|gb|AAL22154.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129471|gb|AAV78977.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095621|emb|CAR61189.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205273967|emb|CAR38972.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710335|emb|CAR34693.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|267995478|gb|ACY90363.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159832|emb|CBW19351.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332990140|gb|AEF09123.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 711 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I + L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 226 >gi|326803908|ref|YP_004321726.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae ACS-120-V-Col10a] gi|326651013|gb|AEA01196.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae ACS-120-V-Col10a] Length = 706 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 89/243 (36%), Gaps = 29/243 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT-ATLEEKVPM-WIRNTKH 56 +R GR+ +++R +S + GS L G T +L T A L E P+ I Sbjct: 319 VRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQVLSACTLAPLSEYQPLDGISPETE 378 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + G G R + RAL+ V+ I + Sbjct: 379 RHFIHHYNFPQYSVGSTGR----YGSPGRREIGHGELGHRALQRVIPSQEEFPYTIRLVA 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 435 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLIMDQEDNN 481 Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 + D+ ED D+D T G I +Q + ++D L AK Sbjct: 482 KYTILTDIQGLEDHLGDMDFKVAGTRQG-ITALQMDIKIKGITEDILRESLAQAKVARMQ 540 Query: 230 LIK 232 L+ Sbjct: 541 LLD 543 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 30/238 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R + + ++K A + LV++GDT +LT +E + + G + Sbjct: 14 RPLQIEVGQLAKQANAAALVRYGDTVVLTAVVGAKEAKEGQDFFPLTVNYEEKQYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I R +R + Q+I + D Sbjct: 74 P---GGFIKRE---GRPTEHATLTARLIDRPIRPMFPEGFKNEVQVINTVMSVDNDCSPE 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ VAL G +A ++ G + G +++ + + D Sbjct: 128 MAAMLGSSVAL-------------TISDIPFDGPIAGVNVGRVDGNLVINPTLDQQAQSD 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241 ++ T + I V+ SA+ S++ L I +L Q + + E Sbjct: 175 LELTVAGTQTA-INMVESSAQE--LSEEEMLEALMFGHANIKELCYFQEEIRQAVGQE 229 >gi|254477352|ref|ZP_05090738.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11] gi|214031595|gb|EEB72430.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11] Length = 705 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R+I + GS L G+T L TL + HG + Sbjct: 310 RIDGRDTTTVRQIVSETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 369 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 370 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 425 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D ++ + +L+ S + + D+ Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 477 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 478 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMSKA 536 Query: 238 ISN 240 +S Sbjct: 537 LSE 539 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+G+ + G+T ++ T + + + G +P Sbjct: 8 LTLETGKVARQADGTVIATLGETSVMANVTFAKEQKPGQDFFPLTVHYQEKYYAAGKVP- 66 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 67 --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G +A G G +++ D D Sbjct: 120 IVAMIAASAALTISGA-------------PFMGPIAGARVGFTDGEYVLNPTV--DDMQD 164 Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + N V ++ V+ +E ++ +N A ++I +I L Sbjct: 165 LRLNPEQRLDLVVAGTKNAVMMVE--SEAYELTEAEMLGAVNFAHEQIQPVIDL 216 >gi|319900855|ref|YP_004160583.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P 36-108] gi|319415886|gb|ADV42997.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P 36-108] Length = 735 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 84/235 (35%), Gaps = 30/235 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 RL GR+ ++R I GS + G+T L+T TL K+ I + Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEAKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I Q + + D L AK+ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKCDGLTYDILEKALLQAKEG 533 Score = 88.2 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR I+L K A+GS +++ G+T LL T ++ VP Sbjct: 12 PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 ++ R G KRE GR R++ RALR + + ++ ++ + Sbjct: 66 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILFS 120 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V + D L + + G ++ + + +++ + Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDNQFVINPTFE 169 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E + S+ + A + I K Q + ++ Sbjct: 170 QLEKADMDLMVGATYE-NIMMVEG--EMSEVSEQDLLEAMKAAHEAIKIQCKAQME-LAE 225 Query: 241 EV 242 EV Sbjct: 226 EV 227 >gi|108804255|ref|YP_644192.1| polynucleotide phosphorylase/polyadenylase [Rubrobacter xylanophilus DSM 9941] gi|123069114|sp|Q1AW48|PNP_RUBXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|108765498|gb|ABG04380.1| Polyribonucleotide nucleotidyltransferase [Rubrobacter xylanophilus DSM 9941] Length = 686 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 28/249 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56 R R +++R + V G+ L G+T +L++ L + ++ T Sbjct: 307 RTDLRAFDEIRPTTAEAHVLPRVHGTGLFTRGETQVLSSLALADLGLVQRLDTLEPQTTK 366 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ Y P STG + R+ G + RAL V+ I I Sbjct: 367 RYMH-HYYFPPYSTGETGRLGPPRRREIGHG----ALAERALLPVIPSEEEFPYAIRIIS 421 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A++ G+ +AL D +K VA ++ G++ Sbjct: 422 EVLESNGSSSMASVCGSTLALMD-------------GGVPIKAPVAGVAMGLVKEGDDYV 468 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S + L A+ ++ Sbjct: 469 ILTDIQGLEDHMGDMDFKVAGTRDG-ITALQMDMKITGVSAELLKEALEQARRGRLQILD 527 Query: 233 LQKDVISNE 241 + ++ I+ Sbjct: 528 IMREEIAEP 536 Score = 79.4 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 80/231 (34%), Gaps = 26/231 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEYGMLPRS 69 R I L + A G+ +FGDT +L+TAT EE P I + Sbjct: 10 RAIVLETGKLARQAGGAVTARFGDTTVLSTATRSEEPRPGATFLPLSVDIEERMSSAGKI 69 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G +KRE G+ ++ R+ R +R + Q+I V + + Sbjct: 70 PGGFLKRE---GKPSEKAILTARLTDRPIRPLFPKDYYYEVQVIGTVLVADQENPYDVVS 126 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVD 188 + GA AL G + A+ G G I++ Y + D+D Sbjct: 127 MVGASAALA-------------LSDIPFGGPIGAVRVGRHPDGGFILNPTYQQLEESDLD 173 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A ++D L +A+ I + Q + I Sbjct: 174 IVVAGTKEA-ITMVEAGARE--VTEDVVVEALEVAQGVIRE----QAEAIE 217 >gi|261248448|emb|CBG26285.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 711 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I + L K+ Sbjct: 177 LVAAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 226 >gi|218679365|ref|ZP_03527262.1| ribonuclease PH [Rhizobium etli CIAT 894] Length = 71 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 51/69 (73%) Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 P++DLDY EDS+ + DANFVMT +G IVE+QG+AE F+++ F +++ LAK+ I +L+ Sbjct: 3 QPVIDLDYLEDSSAETDANFVMTGAGGIVEIQGTAEGTPFTEEEFSSLMGLAKNGIGELV 62 Query: 232 KLQKDVISN 240 LQK I+ Sbjct: 63 ALQKQAIAG 71 >gi|88812956|ref|ZP_01128199.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis Nb-231] gi|88789734|gb|EAR20858.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis Nb-231] Length = 700 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 86/248 (34%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R IS+ GS + G+T + TL I + G Sbjct: 317 RIDGRDNKTVRPISIEVATLPRTHGSAIFTRGETQAIVVTTLGTGRDAQIIDAIEGERKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R+ G R+ R +++V+ I + + Sbjct: 377 PFMLHYNFPPYSVGETGFMGVPKRREIGHG----RLAKRGIQAVMPSQEECPYVIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A + G +AL D +K VA I+ G++ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIKAPVAGIAMGLIKEESEFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G + +Q + ++ L A+ ++ Sbjct: 480 LTDILGDEDHLGDMDFKVAGTEEG-VTALQMDIKINGITRQIMEVALEQARTGRLHILSK 538 Query: 234 QKDVISNE 241 VI+ Sbjct: 539 MNAVIAKP 546 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 32/235 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWITAEYGMLPRST 70 ++L +++ A G+ +V DT +L T ++ P +T Y + Sbjct: 15 VTLETGRIARQASGAVMVNMSDTVVLVTVVGKKDQGEPR-----DFLPLTVNYQERTYAA 69 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G KRE GR + + R+I R +R + QI+ + + Sbjct: 70 GKIPGGFFKRE---GRPSEKETLVSRLIDRPVRPLFPAGFTNEVQIVATVISMNNEVDAD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL + A G G +++ + + + D Sbjct: 127 IPAMIGASAALAVSGI-------------PFDSPLGAGRVGYHKGAFVLNPTFSQLESSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 +D T ++ +E S+ + +++ +I + ++ E Sbjct: 174 LDLVVAGTADAVLMV---ESEANCLSEQTMLDAVIFGHEQMQTVIAAINE-LAQE 224 >gi|113969375|ref|YP_733168.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-4] gi|123130662|sp|Q0HLF6|PNP_SHESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|113884059|gb|ABI38111.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-4] Length = 699 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ G +AL D +K VA I+ G++ + + Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDNFVV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I + Sbjct: 536 MDQAIGSH 543 Score = 71.7 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 27/208 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + Sbjct: 74 --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ + Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYVLNPTVT--QLANSQ 173 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216 N V+ + V + S E ++ Sbjct: 174 LNLVVAGTEGAVLMVES-EAQALPEEVM 200 >gi|16762047|ref|NP_457664.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143536|ref|NP_806878.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|81512815|sp|Q8Z3I0|PNP_SALTI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|25311835|pir||AD0901 polynucleotide phosphorylase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504350|emb|CAD07802.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139170|gb|AAO70738.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 711 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I + L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 226 >gi|220909628|ref|YP_002484939.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC 7425] gi|254782716|sp|B8HXN3|PNP_CYAP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|219866239|gb|ACL46578.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7425] Length = 715 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 19/246 (7%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55 +R+ GR+ +++R IS V + GS L G T +L+ TL + + Sbjct: 322 VRVDGRKLDEVRPISCLVGVLPRRVHGSALFNRGLTQVLSAVTLGTPGDAQELDDLHPDE 381 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G + R+ G + RAL V+ I + Sbjct: 382 SKRYLHHYNFPPFSVGETRPMRSPGRREIGHG----ALAERALVPVLPPQDQFPYVIRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V+ ++G T ++ G+ ++L D + + + + +G + Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGVPLTKPVSGAAMGLIKEGDEV---------RILT 488 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D TDSG I +Q + S + AK +++ Sbjct: 489 DIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLQVVAEAIQQAKPARMHILEKML 547 Query: 236 DVISNE 241 + +S Sbjct: 548 ETLSQP 553 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 95/233 (40%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 R+I +T + A G+ +++ GDT +L TAT E + + G +P Sbjct: 13 RDIHITIGRFAPQAGGTVMIRSGDTAVLVTATRAAAREGIDFLPLLVDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR ++ I R+I R LR + Q++ + Sbjct: 73 ---GGFLRRE---GRPPEKATLISRLIDRPLRPLFPGWLRDDIQVVATTLSMDEQVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA VA+ G +AA+ G++ I++ Y E D+ Sbjct: 127 LAVTGASVAVLLAQI-------------PFNGPMAAVRVGLVGDDFIINPTYSEIEAGDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + +G +V V+ A + + ++ + + DLI+ Q+++++ Sbjct: 174 DLVVAGSPAG-VVMVEAGANQ--LPEQDVIEAIDFGYEAVRDLIRAQQELLTE 223 >gi|152972088|ref|YP_001337234.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896671|ref|YP_002921416.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae NTUH-K2044] gi|187610278|sp|A6TEI3|PNP_KLEP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|150956937|gb|ABR78967.1| polynucleotide phosphorylase, has polyadenylase activity [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548998|dbj|BAH65349.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 711 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTIEEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PVKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 69.4 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGK 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E + +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKSSKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 226 >gi|42526551|ref|NP_971649.1| polynucleotide phosphorylase/polyadenylase [Treponema denticola ATCC 35405] gi|81412546|sp|Q73NW1|PNP_TREDE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|41816744|gb|AAS11530.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC 35405] Length = 698 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 28/248 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I+ V GS + G+T L T+ +E++ I + Sbjct: 313 LRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQIYDDIEGDRR 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G V R R+ G + R+L +V + + Sbjct: 373 ENFILHYNFPPFSVGE-VGRLGTGRREIGHG----NLAHRSLYPMVPEREKFPYTVRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 +V++++G + A + +++ M K VA I+ G++ Sbjct: 428 EVLESNGSSSMATVCSGTLSMLHAGVPM-------------KKPVAGIAMGLITEGNDRY 474 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + A S + L AK+ ++ Sbjct: 475 AILSDILGEEDHLGDMDFKVAGTADG-ITGFQMDIKIAGVSPEIMKNALAQAKEGRMHIL 533 Query: 232 KLQKDVIS 239 + IS Sbjct: 534 GIMNQCIS 541 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 81/226 (35%), Gaps = 27/226 (11%) Query: 16 LTRRVS-KYAEGSCLVKFGDTHLLTT--ATLE--EKVPMWIRNTKHGWITAEYGMLPRST 70 L K A GS ++ + +L T A+ + E + + G +P Sbjct: 16 LETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYNEKYYAAGKIP--- 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G +KRE GR + + R+I R +R + + Q++ C A+ Sbjct: 73 GGFIKRE---GRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMINPPDILAV 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 + A+H G VAA G I++ + + T D++ Sbjct: 130 IASSAAVH-------------ISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADMEIV 176 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T G I V+G A S++ L A + I L K+Q+D Sbjct: 177 VAGTKEG-ITMVEGGANE--VSEEVMLTALEKAHEMIKSLCKMQED 219 >gi|51594836|ref|YP_069027.1| polynucleotide phosphorylase/polyadenylase [Yersinia pseudotuberculosis IP 32953] gi|186893845|ref|YP_001870957.1| polynucleotide phosphorylase/polyadenylase [Yersinia pseudotuberculosis PB1/+] gi|81640532|sp|Q66F56|PNP_YERPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704836|sp|B2K2Q9|PNP_YERPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|51588118|emb|CAH19724.1| polyribonucleotide nucleotidyltransferase [Yersinia pseudotuberculosis IP 32953] gi|186696871|gb|ACC87500.1| 3' exoribonuclease [Yersinia pseudotuberculosis PB1/+] Length = 704 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + + GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ ++ I + + Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ + + A + +V DT + T + + + T G +P Sbjct: 16 VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R+I R +R + S L Q+I + Sbjct: 75 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S++ + Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 205 >gi|332280005|ref|ZP_08392418.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9] gi|332102357|gb|EGJ05703.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9] Length = 740 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 344 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 403 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 404 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 458 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 459 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 505 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 506 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 564 Query: 233 LQKDVIS 239 + + I+ Sbjct: 565 VMEQAIN 571 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 45 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 101 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 102 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 158 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 159 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 205 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 206 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 255 >gi|297180703|gb|ADI16912.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [uncultured gamma proteobacterium HF0010_16J05] Length = 718 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL + + + + Sbjct: 332 RIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLRDAALIDALEGSYKD 391 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R+ G ++ R + + + S + + + Sbjct: 392 TFMLHYNFPPYSVGEAGFMSGPKRREIGHG----KLARRGVSATLPNSEDFPYTVRVVSE 447 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA ++ G++ Sbjct: 448 ITESNGSSSMASVCGTSLALMDAGV-------------PVKAPVAGVAMGLVKEGNRYAV 494 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + +++ A L A + ++ Sbjct: 495 LTDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIDGITEEIMEAALAQAFEARVHILGE 553 Query: 234 QKDVIS 239 VIS Sbjct: 554 MNKVIS 559 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 83/235 (35%), Gaps = 28/235 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++++ ++K A GS +V GDT +LTT + + T G +P Sbjct: 31 QVTIETNKIAKQATGSVVVTIGDTVVLTTVVGAKSARPGQDFFPLTVNYQEKTYAAGKIP 90 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR + R+I R +R + + QI+ + Sbjct: 91 ---GGFFRRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQIVCTVVSTDKNQDPDI 144 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G AL G + A G + G +++ Y T ++ Sbjct: 145 AAMIGTSAALAISGI-------------PFDGPIGAARVGYVDGQYLLNPGYDVLETSEL 191 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 + T S ++ +E S+D + A + +I + ++ E+ Sbjct: 192 NMTVAGTASAVLMV---ESEAKELSEDQMLGAVLFAHQEMQAIITAVAE-LAGEI 242 >gi|24372791|ref|NP_716833.1| polynucleotide phosphorylase/polyadenylase [Shewanella oneidensis MR-1] gi|24346879|gb|AAN54278.1|AE015565_1 polyribonucleotide nucleotidyltransferase [Shewanella oneidensis MR-1] Length = 702 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 317 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + + + Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A ++ + Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 538 Query: 234 QKDVISNE 241 I + Sbjct: 539 MDQAIGSH 546 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 27/206 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + + Sbjct: 77 --GGFFKRE---GRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEPDII 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ + ++ Sbjct: 132 SMIGTSAALAISGI-------------PFNGPLGAARVGYINGEYVLNPTVKQIGASQLN 178 Query: 189 ANFVMTDSGHIV---EVQGSAERATF 211 T+S ++ E Q E Sbjct: 179 LVVAGTESAVLMVESEAQALPEEVML 204 >gi|239833218|ref|ZP_04681547.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium LMG 3301] gi|239825485|gb|EEQ97053.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium LMG 3301] Length = 714 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + GS L G+T + ATL + + G Sbjct: 317 RIDGRDLKTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKQ 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + I + Sbjct: 377 PFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPSAEQFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + +++ L AK ++ Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542 Query: 238 ISN 240 +S Sbjct: 543 LST 545 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 74/227 (32%), Gaps = 27/227 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + Q+++ + Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVVTVVQHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 ++ A AL G + G + G +++ + E Sbjct: 128 VLSMVAASAAL-------------TISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESK 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E S++ + + +I Sbjct: 175 LDLVVAGTSEAVLMV---ESEAQELSEEIMLGAVVFGQKGFQPVIDA 218 >gi|90581545|ref|ZP_01237338.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14] gi|90437307|gb|EAS62505.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14] Length = 708 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + I + G Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGLTGETKD 373 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + + + Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D TD G I +Q + +++ LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSV 535 Query: 234 QKDVISNE 241 + I+ Sbjct: 536 MDNAINTP 543 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 62/212 (29%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + +V DT + + + E + + T G +P Sbjct: 15 VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVSPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G AL G + A G + +++ E +D Sbjct: 129 TMIGTSAALAISGI-------------PFNGPIGAARVGYINDQFVLNPSNVELEESRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T ++ +E S++ + Sbjct: 176 LVVAGTKDAVLMV---ESEADRLSEEQMLQAV 204 >gi|315617247|gb|EFU97856.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3431] Length = 690 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 353 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 354 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 408 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 409 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 455 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 456 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 514 Query: 233 LQKDVIS 239 + + I+ Sbjct: 515 VMEQAIN 521 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 73/224 (32%), Gaps = 30/224 (13%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77 + A + +V DT + T ++K +T Y + G + +RE Sbjct: 4 RQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGRIPGSFFRRE 60 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 GR I R+I R +R + + Q+I + A+ GA AL Sbjct: 61 ---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G + A G + +++ E +D T++ Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 164 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 ++ +E S+D + ++ I ++ +L K+ Sbjct: 165 VLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 205 >gi|161506151|ref|YP_001573263.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867498|gb|ABX24121.1| hypothetical protein SARI_04342 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 721 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 439 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 440 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 486 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 487 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 545 Query: 233 LQKDVIS 239 + + I+ Sbjct: 546 VMEQAIN 552 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 26 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 82 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 83 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I + L K+ Sbjct: 187 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 236 >gi|326914227|ref|XP_003203428.1| PREDICTED: exosome complex exonuclease RRP43-like [Meleagris gallopavo] Length = 291 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 25/257 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P + + G+I Sbjct: 38 RPDGRELGEFRATTVNIGSITTADGSALVKLGNTTVICGVKAELAAPA-VDSANKGYIVP 96 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115 LP R + SG G +Q + I + ++ L G ++ Sbjct: 97 NVE-LPSLCSTRFR----SGPPGEEAQAASQFIADVIENSQIIAKEDLCIAEGKLAWVLY 151 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164 CD+ + DG A+ AL + + + + K + V++ H A Sbjct: 152 CDIICLDYDGNILDASTFALLAALKNVQLPSVTINEETGLSEVNLKQKNPLVIRKHPVAT 211 Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 S + IVD E+ V + + V + + ++ A Sbjct: 212 SFAIFDDXLLIVDPTAEEEDLATGTVTVVTDEDDRLCSVHKPG-GSPLTGAKLQDCISRA 270 Query: 224 KDRIADLIKLQKDVISN 240 R ++ KL VI + Sbjct: 271 ITRHKEVKKLIDKVIKS 287 >gi|255087891|ref|XP_002505868.1| predicted protein [Micromonas sp. RCC299] gi|226521139|gb|ACO67126.1| predicted protein [Micromonas sp. RCC299] Length = 791 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 33/255 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR ++R++ V GS + + G+T L T T+ + + + Sbjct: 360 RVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQALATVTIGKLIDAQKLDAPVGPDNR 419 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + Y S +R +S R+ G + ++L ++ + + I+ + Sbjct: 420 RMMLHYSFPSFSINETPRRGGLSRREIGHG----ALAEKSLAGIIPAAKEWPFAVRINAE 475 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 ++++G + AA+ +AL D +K HV AIS G++ Sbjct: 476 TMESNGSSSMAAVCSGSLALMDAGV-------------PIKEHVGAISVGLVMDEDEQTG 522 Query: 172 -----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I +Q + A D +++A Sbjct: 523 KVTRYELLSDIMGLEDVLGDMDFKIAGT-RGGITGIQLDCKPAGIPLDILIEAMDVASIA 581 Query: 227 IADLIKLQKDVISNE 241 + +I IS Sbjct: 582 RSAVIDEMDRAISKP 596 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 30/234 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67 + V++ +G+ + GD+ ++ A + + + +G +P Sbjct: 50 RVGFETGRVARLTDGAIVASMGDSRVICAAVCSRDENPDAGFFPLQVDYRERHSAFGKIP 109 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 +RE G R R++ RA+R + S + Sbjct: 110 ---PTFTRRE---GAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLATDQSQDPAV 163 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTI 185 A+ GA AL S G V A+ +L I++ +D Sbjct: 164 LAVNGASAALS-------------VSSIPWNGPVGAVRVSVLGDGNEIILNPS-DKDVEA 209 Query: 186 DVDANFVMTDSGH--IVEVQ-GSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 F + ++E Q G+A+ + + L A + LI+ Q+ Sbjct: 210 SKLTLFYAGNENRTLMIEAQAGTADEGGVPESVVASALRAAHEAAKVLIEPQRR 263 >gi|309785491|ref|ZP_07680122.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae 1617] gi|187611311|sp|Q32BG9|PNP_SHIDS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|308926611|gb|EFP72087.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae 1617] Length = 711 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGIVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|170727889|ref|YP_001761915.1| polynucleotide phosphorylase/polyadenylase [Shewanella woodyi ATCC 51908] gi|226702688|sp|B1KRQ5|PNP_SHEWM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|169813236|gb|ACA87820.1| Polyribonucleotide nucleotidyltransferase [Shewanella woodyi ATCC 51908] Length = 702 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T Sbjct: 314 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 373 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPTAEEFPYSVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 IS Sbjct: 536 MDQAISGH 543 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 27/208 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A + L GDT +L T ++ + + T G +P Sbjct: 15 VTLETGVIARQANAAVLASMGDTTVLVTVVGKKAEDVGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + + Sbjct: 74 --GGFFKRE---GRPSENETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + G G +++ + + + D+D Sbjct: 129 SMIGTSAALS-------------ISDLPFNGPLGVARVGYTNGEYVLNPNVSQLAESDLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216 T G ++ V+ +E A+ ++ Sbjct: 176 LVVAGTQ-GAVLMVE--SEAASLPEEVM 200 >gi|187732493|ref|YP_001881919.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii CDC 3083-94] gi|226702689|sp|B2U211|PNP_SHIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187429485|gb|ACD08759.1| polyribonucleotide nucleotidyltransferase [Shigella boydii CDC 3083-94] Length = 711 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|254461626|ref|ZP_05075042.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium HTCC2083] gi|206678215|gb|EDZ42702.1| 3' exoribonuclease family, domain 2 [Rhodobacteraceae bacterium HTCC2083] Length = 713 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 27/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R I + GS L G+T L TL ++ HG + Sbjct: 318 RIDGRDTTTIRPIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDSLHGNFKS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ + + + + Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 + +++G + A++ G +++ D LK VA ++ G++ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKSAVAGVAMGLIMEEDGSYA 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + D L AKD ++ Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPDIMEKALAQAKDGRMHILG 539 Query: 233 LQKDVI 238 I Sbjct: 540 EMGKAI 545 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A+G + G+T ++ T + + + G +P Sbjct: 16 LTLETGKVARQADGCVIATLGETSVMAAVTFAKKQKPGQDFFPLTVHYQEKYYAAGKVP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 75 --GGFFKREA---RPSEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLDNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----PIVDLDYGED 182 T A+ A AL G +A G + G P VD Sbjct: 128 TLAMIAASAALTISGA-------------PFMGPIACARVGFVDGEYTLNPTVDDMQDLR 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + + V+ + V + S E S+ +N A ++I +I L Sbjct: 175 LNPEQRLDLVVAGTKDAVMMVES-EAYELSEAEMLGAVNFAHEQIQPVIDL 224 >gi|110807033|ref|YP_690553.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 5 str. 8401] gi|191168040|ref|ZP_03029840.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A] gi|123342480|sp|Q0T0B7|PNP_SHIF8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611324|sp|Q83JG0|PNP_SHIFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110616581|gb|ABF05248.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri 5 str. 8401] gi|190901909|gb|EDV61658.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A] gi|313648594|gb|EFS13036.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2a str. 2457T] gi|320175528|gb|EFW50624.1| Polyribonucleotide nucleotidyltransferase [Shigella dysenteriae CDC 74-1112] gi|323154378|gb|EFZ40579.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EPECa14] gi|323173576|gb|EFZ59205.1| polyribonucleotide nucleotidyltransferase [Escherichia coli LT-68] gi|323178877|gb|EFZ64453.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1180] gi|332752324|gb|EGJ82714.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 4343-70] gi|332752851|gb|EGJ83236.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-671] gi|332754470|gb|EGJ84836.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2747-71] gi|332765161|gb|EGJ95388.1| pnp [Shigella flexneri 2930-71] gi|332998806|gb|EGK18402.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri VA-6] gi|332999243|gb|EGK18829.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-272] gi|333000227|gb|EGK19810.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-218] gi|333014593|gb|EGK33940.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-304] gi|333014965|gb|EGK34309.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-227] Length = 711 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|325473489|gb|EGC76684.1| polyribonucleotide nucleotidyltransferase [Treponema denticola F0402] Length = 698 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 28/248 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R+ GR +R I+ V GS + G+T L T+ +E++ I + Sbjct: 313 LRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQIYDDIEGDRR 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G V R R+ G + R+L +V + + Sbjct: 373 ENFILHYNFPPFSVGE-VGRLGTGRREIGHG----NLAHRSLYPMVPEREKFPYTVRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 +V++++G + A + +++ M K VA I+ G++ Sbjct: 428 EVLESNGSSSMATVCSGTLSMLHAGVPM-------------KKPVAGIAMGLITEGNDRY 474 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + A S + L AK+ ++ Sbjct: 475 AILSDILGEEDHLGDMDFKVAGTADG-ITGFQMDIKIAGVSPEIMKNALAQAKEGRMHIL 533 Query: 232 KLQKDVIS 239 + IS Sbjct: 534 GIMNQCIS 541 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 80/226 (35%), Gaps = 27/226 (11%) Query: 16 LTRRVS-KYAEGSCLVKFGDTHLLTT--ATLE--EKVPMWIRNTKHGWITAEYGMLPRST 70 L K A GS ++ + +L T A+ + E + + G +P Sbjct: 16 LETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYNEKYYAAGKIP--- 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G +KRE GR + + R+I R +R + + Q++ C A+ Sbjct: 73 GGFIKRE---GRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMINPPDILAV 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 + A+H G VAA G I++ + + T D++ Sbjct: 130 IASSAAVH-------------ISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADMEIV 176 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T G I V+G A S+ L A + I L K+Q+D Sbjct: 177 VAGTKEG-ITMVEGGANE--VSEAVMLTALEKAHEMIKALCKMQED 219 >gi|187611309|sp|Q8EHL1|PNP_SHEON RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 699 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+ + +R +S+ V GS L G+T L T TL + I + Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + + + Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I + Sbjct: 536 MDQAIGSH 543 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 27/206 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + + Sbjct: 74 --GGFFKRE---GRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G + G +++ + ++ Sbjct: 129 SMIGTSAALAISGI-------------PFNGPLGAARVGYINGEYVLNPTVKQIGASQLN 175 Query: 189 ANFVMTDSGHIV---EVQGSAERATF 211 T+S ++ E Q E Sbjct: 176 LVVAGTESAVLMVESEAQALPEEVML 201 >gi|332086383|gb|EGI91530.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae 155-74] Length = 690 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 353 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 354 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 408 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 409 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 455 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 456 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 514 Query: 233 LQKDVIS 239 + + I+ Sbjct: 515 VMEQAIN 521 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 73/224 (32%), Gaps = 30/224 (13%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77 + A + +V DT + T ++K +T Y + G + +RE Sbjct: 4 RQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGRIPGSFFRRE 60 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 GR I R+I R +R + + Q+I + A+ GA AL Sbjct: 61 ---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G + A G + +++ E +D T++ Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 164 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 ++ +E S+D + ++ I ++ +L K+ Sbjct: 165 VLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 205 >gi|317046745|ref|YP_004114393.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b] gi|316948362|gb|ADU67837.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b] Length = 712 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTARDAQSLDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKQEDFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILSV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MEQAISTP 544 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTADEIKQSRLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T + ++ +E ++D + Sbjct: 177 LVVAGTQNAVLMV---ESEADILTEDQMLGAV 205 >gi|187611317|sp|A9MP39|PNP_SALAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 711 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I + L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 226 >gi|47227071|emb|CAG00433.1| unnamed protein product [Tetraodon nigroviridis] Length = 275 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 27/258 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R +L A+GS LVK G+T ++ E P + G+I Sbjct: 23 RPDGRELLEFRPTTLNIGSISTADGSALVKVGNTTIICGIKAELANPT-VEAPGKGYIVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115 + P + G G ++Q + I + S ++ L G ++ Sbjct: 82 NVDLPPLCSS-----RFRPGPPGEQAQACSQFIADLIESSEIIQPEDLCIERGKLCWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHD-----------CLQHMEDCSNKFQLSQVLKGHVA 162 CD+ + DG R A + AL + D K L + K V Sbjct: 137 CDLMCLDYDGNLRDACVIALLAALKITQLPEAIISTETCLPVVDLEKKRGL-NIRKHPVG 195 Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222 + C IVD E++ V + + V + S + +N Sbjct: 196 SSFCIFDESTLIVDPTDEEENLSTAQITVVTDEGDGLCAVHKPG-GVSLSGEKLQECINR 254 Query: 223 AKDRIADLIKLQKDVISN 240 A R ++ KL VI++ Sbjct: 255 ATVRQKEIQKLIDKVINS 272 >gi|82778478|ref|YP_404827.1| polynucleotide phosphorylase/polyadenylase [Shigella dysenteriae Sd197] gi|81242626|gb|ABB63336.1| polynucleotide phosphorylase [Shigella dysenteriae Sd197] Length = 734 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGIVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|237808986|ref|YP_002893426.1| polynucleotide phosphorylase/polyadenylase [Tolumonas auensis DSM 9187] gi|259534170|sp|C4L8X0|PNP_TOLAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|237501247|gb|ACQ93840.1| Polyribonucleotide nucleotidyltransferase [Tolumonas auensis DSM 9187] Length = 720 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 88/246 (35%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +R +S+ V GS L G+T L TL + I + Sbjct: 314 RIDGRDPQMIRALSVGTGVLPRVHGSALFTRGETQALVACTLGTERDAQTIDEITGERTD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ A + + + Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHG----RLARRGVSAVIPSQAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDSFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + +++ L A+D ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTSEG-VTALQMDIKIEGITKEIMQIALKQARDARLHILTV 535 Query: 234 QKDVIS 239 I Sbjct: 536 MDKAIG 541 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 +++ V + A + +V DT +L T + E + + T G +P Sbjct: 15 VTIETGVMARQATAAVMVSMDDTAVLVTVVGKKEAVEGRDFFPLTVNYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR R+I R +R + L Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G + I++ E +D Sbjct: 129 AMIGTSAALAISGI-------------PFNGPIGAARVGYINDQYILNPSVVELQESKLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + ++ +E A ++ + D++ +IK + Sbjct: 176 LVVAGTAAAVLMV---ESEAAILPEEVMLGAVVYGHDQLQTVIKAVNE 220 >gi|283788208|ref|YP_003368073.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium ICC168] gi|282951662|emb|CBG91362.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium ICC168] Length = 734 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ + Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I + L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQAINDLVKEA 249 >gi|313905717|ref|ZP_07839077.1| polyribonucleotide nucleotidyltransferase [Eubacterium cellulosolvens 6] gi|313469424|gb|EFR64766.1| polyribonucleotide nucleotidyltransferase [Eubacterium cellulosolvens 6] Length = 715 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 91/253 (35%), Gaps = 36/253 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH---LLTTATLE-----EKVPMWIRN 53 R GR Q+R ++ V + GS + G T ++T A L E + +I Sbjct: 325 RPDGRAVRQIRPLAAEVDVIPHVHGSAMFTRGQTQICDVITLAPLSEAQKVEGLDPFITK 384 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 ++ +Y S G R+ G + RAL V+ I Sbjct: 385 KRY---MHQYNFPSYSVGETKPSRGPGRREIGHG----ALAERALLPVLPTEEEFPYAIR 437 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY- 172 + +++G T A++ + +AL +K VA ISCG++ G Sbjct: 438 AVSETFESNGSTSQASVCASSMALMAAGV-------------PIKKPVAGISCGLVTGDT 484 Query: 173 -----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227 + D+ ED D+D T G I +Q + ++ ++ KD Sbjct: 485 DDDYLVLTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRQIVEEAISRCKDAR 543 Query: 228 ADLI-KLQKDVIS 239 ++ ++ + I+ Sbjct: 544 EYILTEVMEKAIA 556 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 75/226 (33%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +S+ V K A G + +GDT LL TAT E V + + + G Sbjct: 25 RTLSVDIGRVGKQANGCAFMHYGDTTLLCTATASKQPREGVDFFPLSVEFEEKMYAVGKF 84 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G+ + R+I R +R + + + Sbjct: 85 P---GGFNKRE---GKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPACDPE 138 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ +A G AA GM+ G +++ Y + + Sbjct: 139 VVAMLGSSLATA-------------ISDIPFDGPCAATQIGMIDGEFVINPGYEQKAEST 185 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ AE + + LA + +I Sbjct: 186 LALTVASTRE-KVIMIEAGAEEIP--EAKMIEAIYLADETNKKVIA 228 >gi|15639871|ref|NP_219321.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum subsp. pallidum str. Nichols] gi|189026109|ref|YP_001933881.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum subsp. pallidum SS14] gi|81344924|sp|O83856|PNP_TREPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704828|sp|B2S4C3|PNP_TREPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|3323203|gb|AAC26576.1| polyribonucleotide nucleotidyltransferase (pnp) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018684|gb|ACD71302.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum subsp. pallidum SS14] gi|291060245|gb|ADD72980.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum subsp. pallidum str. Chicago] Length = 702 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 85/247 (34%), Gaps = 27/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR + +R I+ V GS + G+T L TL I + Sbjct: 313 LRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDGQVYDDIEGDRR 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R V R+ G + R+L +V+ + + Sbjct: 373 ENFILHYNFPPFSVGE-IGRMGVGRREIGHGC----LAHRSLSAVIPDPEQFPYTVRVVS 427 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173 ++++++G + A + ++L +K VA I+ G++ Sbjct: 428 EILESNGSSSMATVCSGTLSLLHAGV-------------PIKKPVAGIAMGLITDGVRYA 474 Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + S L A+ ++ Sbjct: 475 ILSDILGEEDHLGDMDFKVAGTCDG-ITGFQMDVKVEAVSASLMKEALQQARVGRLHILS 533 Query: 233 LQKDVIS 239 + IS Sbjct: 534 VMNQTIS 540 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 79/227 (34%), Gaps = 27/227 (11%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 + L + A GS ++ T +L T +E + G +P Sbjct: 13 PLLLESGYLARQANGSVYLQCEGTAILATVCSSAQRQEGLDYVPLTVDFNEKYYAVGKMP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R I R+I R +R + + G D V+ Sbjct: 73 ---GGFIKRE---GRPKDREILISRLIDRPMRPLFEKE-FGR-----DIHVV-------P 113 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 I+ V HD L + + G VAA+ L G +++ + + + Sbjct: 114 TCISSDMVHPHDVLAIVASSAAVTLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASM 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + T G I V+G A S+D L A++ I L +Q Sbjct: 174 EVVVAGTRQG-ITMVEGGARE--VSEDLMLGALEQAQEHIKALCDMQ 217 >gi|297184126|gb|ADI20245.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 711 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 82/229 (35%), Gaps = 20/229 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR ++R I A GS + G+T LTT TL + + T Sbjct: 320 RLDGRATTEVRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTSLDANRIDDATFTGEE 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG VS R+ G + RAL +VD I + D Sbjct: 380 KFYLHYNFPPFSTGEARPIRGVSRREIGHG----NLAQRALYQMVDPE--NPFTIRVVSD 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A + +A+ D M + + + G A+ + D+ Sbjct: 434 ILESNGSSSMATVCAGTLAMMDAGVKMVRPVSGIAMGLISDGEKYAV---------LSDI 484 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T+ G I Q + S + L + + Sbjct: 485 LGDEDHLGDMDFKVTGTEKG-ITACQMDIKVKGLSYEILVKALKQSLEG 532 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 84/236 (35%), Gaps = 31/236 (13%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTT-ATLEEKVPMWIRNTKHGWIT 60 G REI+L K A+GS +VK G T LL T + +E +T Sbjct: 13 PDG------REITLETGKLAKQADGSVVVKCGGTMLLATIVSSKEA----KDGIDFLPLT 62 Query: 61 AEYGMLPRSTGNRVKREAVS--GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 +Y + RV + GR R+I R LR + +I + + Sbjct: 63 VDYR-EKFAANGRVPGGFLKREGRPSDNEVLTMRLIDRVLRPLFPKD--YHAEIQLMIQM 119 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 I D ++TG + + + G ++ + G + G +++ Sbjct: 120 ISYDENVEATSLTGLAASAAIAVSDL-----------PFDGPISEVRVGRINGEHVINPT 168 Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + +++D + +V V+G E S++ + A D I I+ Q Sbjct: 169 PAQIGELELDM-VIGASMDSVVMVEG--EMQEISEEEMVEAIKYAHDAIKVQIEAQ 221 >gi|46578918|ref|YP_009726.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris str. Hildenborough] gi|120603481|ref|YP_967881.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris DP4] gi|81567122|sp|Q72ER6|PNP_DESVH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187610296|sp|A1VG88|PNP_DESVV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|46448330|gb|AAS94985.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|120563710|gb|ABM29454.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris DP4] gi|311232776|gb|ADP85630.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris RCH1] Length = 760 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I + + A GS L G+T L ATL ++ G +T Sbjct: 322 RIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVATLGSSTDEQRMDSLTGDVTK 381 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G E R R + +ALR ++ L + + + Sbjct: 382 RFMLHYNFAPYCVG-----EVKPVRVSRREIGHGALAEKALRPILPLGEDFPFTLRVVAE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 ++++G + AA+ G ++L D + VA ++ G++ Sbjct: 437 TMESNGSSSMAAVCGGCLSLMDAGV-------------PITAPVAGVAMGLIKEGDQYVV 483 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I VQ + D + A+D Sbjct: 484 LTDILGDEDALGDMDFKIAGTSEG-ITAVQMDIKVKGLPTDVMARAMQQARDA 535 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 82/227 (36%), Gaps = 27/227 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68 EI ++ A+G+ ++ G T +L TA + + + ++ G +P Sbjct: 18 EIVFETGRLANQADGAVWIQCGGTVVLVTACSQATDRDLGFFPLTVEYSEKMYAAGRIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R + R+I R +R + Q++ + + + Sbjct: 77 --GSFFRREI--GRPSERETLVSRLIDRPIRPLFPKGLKDEVQVLANVISSDQNNDSDVL 132 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+TGA AL S G VA G + G +++ E D Sbjct: 133 AVTGASTAL-------------GLSSIPFDGPVAGARIGRIDGQFVINPTIKEMERS--D 177 Query: 189 ANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 N V+ S +V V+G E + + L I LI Q Sbjct: 178 LNIVLAASRDAVVMVEG--EASFVPEAVIVEALEWGHKEIQPLIDAQ 222 >gi|307546723|ref|YP_003899202.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM 2581] gi|307218747|emb|CBV44017.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM 2581] Length = 710 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R + + GS + G+T + ATL + ++ + + Sbjct: 316 RIDGRDLKTVRPLDIEVGSLPKTHGSAIFTRGETQAVVVATLGTLRDAQLIESLEGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G R+ G R+ R + +++ I + + Sbjct: 376 RFLLHYNFPPYCVGEAGFMGGPKRREIGHG----RLARRGVEAMLPSEDEFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D M K VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPM-------------KAPVAGIAMGLVKDEDGFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G + +Q + +++ L A + +++ Sbjct: 479 LTDILGDEDHLGDMDFKVAGSAEG-VTALQMDIKIEGINEEIMEQALQQAHEARLHILEQ 537 Query: 234 QKDVISN 240 VI Sbjct: 538 MNTVIGQ 544 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 35/232 (15%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +V DT +L T + P + + + T G +P Sbjct: 15 VTLETGRIARQASGAVMVTMDDTVVLCTVVAKKDVNPSQPFFPLSVHYQEKTYAVGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + + Q+I + A Sbjct: 74 --GGFFKRE---GRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDRNHDPDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187 A+ G AL G + A G + ++ E Sbjct: 129 AMIGTSAALA-------------ISGVPFNGPIGAARVGFTEEHGYFLNPSVEE--LASS 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 + N V+ + V + S E +D + +A + I +L Sbjct: 174 ELNMVVAGTEKAVLMVES-EANELLEDEMLGAVLYGHQEMQVAINAIQELAA 224 >gi|30064504|ref|NP_838675.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a str. 2457T] gi|56480278|ref|NP_708965.2| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a str. 301] gi|260857293|ref|YP_003231184.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O26:H11 str. 11368] gi|260869916|ref|YP_003236318.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O111:H- str. 11128] gi|309793742|ref|ZP_07688168.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 145-7] gi|30042763|gb|AAP18486.1| polynucleotide phosphorylase [Shigella flexneri 2a str. 2457T] gi|56383829|gb|AAN44672.2| polynucleotide phosphorylase [Shigella flexneri 2a str. 301] gi|257755942|dbj|BAI27444.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O26:H11 str. 11368] gi|257766272|dbj|BAI37767.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O111:H- str. 11128] gi|281602548|gb|ADA75532.1| Polynucleotide phosphorylase [Shigella flexneri 2002017] gi|308122699|gb|EFO59961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS 145-7] Length = 734 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558 Query: 233 LQKDVIS 239 + + I+ Sbjct: 559 VMEQAIN 565 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 39 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 96 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249 >gi|94501380|ref|ZP_01307900.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65] gi|94426493|gb|EAT11481.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65] Length = 698 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 101/249 (40%), Gaps = 28/249 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R++++ V K GS L G+T + T TL + +V ++ + Sbjct: 319 RIDGRDNKTVRDLNIQTDVLKGTHGSALFTRGETQSIGTVTLGSTRDAQVVEFLHEVQKD 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIIDC 116 Y P S G + A R+ G R+ R +++++ L + + Sbjct: 379 NFLFHYNFPPYSVGECGRMGAPGRREVGHG----RLARRGVQAMMPSLEDFP-YTVRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172 ++ +++G + A++ A +AL D +K VA I+ G++ G Sbjct: 434 EITESNGSSSMASVCSASLALMDAGV-------------PIKAPVAGIAMGLVKEGERFS 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D +++G I +Q + ++ L A D ++K Sbjct: 481 VLTDILGDEDHLGDMDFKVAGSEAG-ITALQMDIKIQGITEQIMEIALEQALDARMTILK 539 Query: 233 LQKDVISNE 241 +VI+ Sbjct: 540 QMNEVIAEP 548 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 28/230 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67 E++L + +++ A G+ LV G+ +L T + + + G +P Sbjct: 17 EVTLETQRIARQASGAVLVTMGEIQVLATVVGKKETKPGQDFFPLTVNYQEKYYAAGKIP 76 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE R + R+I R +R + + Q+++ + Sbjct: 77 ---GGFIKRE---NRPSEKETLTSRLIDRPIRPLFPEGYMNEVQVVLTVVSADKENDPDI 130 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTID 186 AA+ GA AL G + A G +++ Y + T Sbjct: 131 AAMIGASAALAISGI-------------PFDGPIGAARVGYDAENGYVLNPTYAQLETSL 177 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T+ ++ +E S+D + A + K+ Sbjct: 178 LDMVVAGTEDAVLMV---ESEAKELSEDQMLGGVLFAHQEFQVAVNAVKE 224 >gi|226504202|ref|NP_001146469.1| hypothetical protein LOC100280057 [Zea mays] gi|219887423|gb|ACL54086.1| unknown [Zea mays] Length = 240 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 92/256 (35%), Gaps = 46/256 (17%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+R + T A GS GDT +L + N + I Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + +G+ G + +E + + R L+S+ L+ + + V+ Sbjct: 67 VWK-------------PKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 113 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYG 180 DG + AI + AL M K AISCG++ G I+D Sbjct: 114 DGSLMSCAINASCAALAFAGIPM-------------KHLAVAISCGVMDNGVVILDTSRA 160 Query: 181 EDSTIDVDANFVMTDSGHIVE----VQGSAE----------RATFSQDHFFAMLN---LA 223 E+ A+ V +S VE Q E S+D +F + +A Sbjct: 161 EEQQARSFAHLVFPNSRKSVESKDTTQRDEESERGLITCITHGAMSEDDYFNCIERGVMA 220 Query: 224 KDRIADLIK--LQKDV 237 RI+D ++ LQK+ Sbjct: 221 SSRISDFMRKTLQKEA 236 >gi|329997819|ref|ZP_08302920.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3] gi|328538902|gb|EGF64965.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3] Length = 684 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 353 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 354 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTIEEFPYTVRVVSE 409 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 410 ITESNGSSSMASVCGASLALMDAGV-------------PVKAAVAGIAMGLVKEGDNFVV 456 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 457 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 515 Query: 234 QKDVIS 239 + I+ Sbjct: 516 MEQAIN 521 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 30/224 (13%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77 + A + +V DT + T ++K +T Y + G +RE Sbjct: 4 RQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGKIPGGFFRRE 60 Query: 78 AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137 GR I R+I R +R + + Q+I + A+ GA AL Sbjct: 61 ---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117 Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197 G + A G + +++ E + +D T++ Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAA 164 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 ++ +E S+D + ++ I ++ L K+ Sbjct: 165 VLMV---ESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 205 >gi|307180205|gb|EFN68238.1| Exosome complex exonuclease RRP45 [Camponotus floridanus] Length = 387 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 86/261 (32%), Gaps = 29/261 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR+ Q R + + G C+V G T + + + + P R G I Sbjct: 23 RLDGRRLLQPRPVKI---YFGSKWGCCMVSLGHTKAIAQVSCDIRQPKTFR-PNEGTIYI 78 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113 + P + + SGRQ + I R + + + VDL +L + Sbjct: 79 NVELAPLA-----AQHFESGRQSEAAILISRQLEKCFKDSKCVDLESLCIVADKKVWSLR 133 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----------LKGHVA 162 ID ++I DG A AL + + + + V Sbjct: 134 IDINIINHDGNLIDCASIAVLAALMHFHRPDVTSTGEEIIIHPASEKDFLPLTLFHYPVC 193 Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-N 221 G I+D Y E+ + M + + T + + + + N Sbjct: 194 VSFITFENGNTIMDPTYIEERVGVAELTLGMNSYRELCSLHFDYLTKTMTVEDVISAVSN 253 Query: 222 LAKDRIADLIKLQKDVISNEV 242 A + L++ K+ ++ +V Sbjct: 254 HAANYATKLVQDIKEAVAKDV 274 >gi|297184037|gb|ADI20157.1| hypothetical protein [uncultured alpha proteobacterium EB080_L06A09] Length = 709 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 17/243 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR + +R I V GS L G+T L TL + + G + Sbjct: 318 RIDGRDLSTVRPIISETAVLPRTHGSALFTRGETQALAVTTLGTGDDEQMIDALSGTYRS 377 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R GR R ++ RAL++V+ + I + + Sbjct: 378 NFLLHYNFPPYSVGE-CGRMMGPGR---REIGHGKLAWRALQAVLPPATEFPYTIRMVSE 433 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +++ D + + +L+ + D+ Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLILQDSGEYA--------VLTDI 485 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T++G I +Q + A + + + AKD ++ + Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKAMAQAKDGRLHILGEMANA 544 Query: 238 ISN 240 ++ Sbjct: 545 LTE 547 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 33/231 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A+ + + +G+T +L +E + + G +P Sbjct: 16 LTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLTVNYQEKYYAAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + QI + V+ D Sbjct: 75 --GGFFKREA---RPTEKETLTARLIDRPIRPLFIPGFKHEVQITLT--VLSHDLVNDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182 A+ A AL G + G G +++ + Sbjct: 128 MVAMIAASAALTLSGA-------------PFMGPIGNCRVGFEGGQYVLNPTCDDMHELK 174 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D + V+ + V + S E +++ +N A ++I +I + Sbjct: 175 NNPDQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAINFAHEQIQPVIDM 224 >gi|329847329|ref|ZP_08262357.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis biprosthecum C19] gi|328842392|gb|EGF91961.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis biprosthecum C19] Length = 749 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 19/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +++R I V GS L G+T L ATL +E+ + T Sbjct: 317 RVDGRPVDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGTGDDEQYIDALDGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+R ++ + + + Sbjct: 377 KFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVRPMLPTVEEFPYTVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176 + +++G + A + G +AL D ++ + + +L+ Y I+ D Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLKSPVSGIAMGLILEPS---------GEYAILSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T +G I +Q + +++ L A + +++ Sbjct: 484 ILGDEDHLGDMDFKVAGTVNG-ITSLQMDIKVPGITEEIMTKALRQANEGRLHILEEMNK 542 Query: 237 VISN 240 IS Sbjct: 543 AISG 546 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R+++L +++ A+ + L +G+T +L T +T Y + Sbjct: 14 RKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKP---GQDFFPLTVNYQEKTFAA 70 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 G KRE GR + + R+I R +R + Q++ C V+ D Sbjct: 71 GKIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVV--CTVLSHDMEND 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ A AL G + G++ G +++ + Sbjct: 126 PDIVAMVAASAAL-------------TLSGVPFMGPIGGARVGIIDGEFVLNPTGDQVKE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T + ++ V+ +E S+D A L A + +I+ Sbjct: 173 STLDLVVAGT-TDALMMVE--SEAKELSEDKMLAALMFAHRGMQPVIEA 218 >gi|300025003|ref|YP_003757614.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium denitrificans ATCC 51888] gi|299526824|gb|ADJ25293.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium denitrificans ATCC 51888] Length = 733 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 MR+ GR +R I V GS L G+T L ATL + TK Sbjct: 314 MRIDGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTKK 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R ++ RA+ ++ + + Sbjct: 374 ERFLLHYNFPPYSVGEVGR----MGSPGRREIGHGKLAWRAIHPMLPSQEDFPYTLRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A + G+ +AL D LK VA I+ G++ Sbjct: 430 EITESNGSSSMATVCGSSLALMDAGV-------------PLKSPVAGIAMGLIKEGDEFV 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T +G + +Q + +++ L+ A D Sbjct: 477 VLSDILGDEDHLGDMDFKVAGTANG-VTSLQMDIKITGITEEIMRIALDQAHDG 529 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 38/236 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R++ L ++ A+ + + ++GDT +L T +++ + + + T G + Sbjct: 14 RKLKLETGHYARQADAAVMAQYGDTTVLATVVGARSVKPGIDFFPLTVNYQERTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR + R+I R +R + Q+++ + Sbjct: 74 P---GGYFKRE---GRPSEKETLTSRLIDRPIRPLFVEGFKNETQVVVTVLSHDLENDPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + A AL G + G++ G +++ E Sbjct: 128 ILGMVAASAALTLSGL-------------PFLGPIGGARVGLVNGELVLNPMIDEMKDSA 174 Query: 187 VDANFVMT---------DSGHIVEVQGSAERATFSQDHF----FAMLNLAKDRIAD 229 +D T ++ + E Q E F H A++ LA+ + Sbjct: 175 LDLVVAGTADAVMMVESEAKELPEAQML-EAVVFGHKHMQPVIQAIITLAEKAAKE 229 >gi|229495732|ref|ZP_04389460.1| polyribonucleotide nucleotidyltransferase [Porphyromonas endodontalis ATCC 35406] gi|229317306|gb|EEN83211.1| polyribonucleotide nucleotidyltransferase [Porphyromonas endodontalis ATCC 35406] Length = 737 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 30/249 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 RL GR+ ++R I + GS + G+T LTT TL K + + Sbjct: 318 RLDGRKTTEIRPIWIETDCLPMPHGSAVFTRGETQSLTTVTLGTKADEKLVDDVLCRCKE 377 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + A R+ G + RAL+ ++ + + D Sbjct: 378 RFLLHYNFPPFSTGEARPQRATGRREIGHG----NLAFRALKRMIPDE--YPYVVRVISD 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 432 ILESNGSSSMATVCAGTLALMDAGVQ-------------IKKPVSGIAMGLISENKGTNY 478 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L A++ ++ Sbjct: 479 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALAQAREGRMHIL 537 Query: 232 KLQKDVISN 240 ++ + + Sbjct: 538 GKIEEAMPS 546 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 27/230 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66 R I + K A+G+ V G+T LL T + + G Sbjct: 15 RTIKVETGKLAKQADGAVTVTMGNTVLLATVCAAADAAPDCDFMPLQVDYKEKYSAVGRF 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +RE G+ R++ RALR + ++ ++ + ADG Sbjct: 75 P---GGFTRRE---GKASDYEILTSRLVDRALRPLFPAD--YHAEVFVNITLFSADG--- 123 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 V + D L + S +G ++ + + G +++ Y + + D Sbjct: 124 --------VDMPDALAGLAASSALAVSDIPFEGPISEVRVARINGEFLINPTYEQVANAD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T +I+ V+G E + + +A + I + Q + Sbjct: 176 IDMMVAATID-NIMMVEG--EMDEVQEADMLEAIKVAHEAIKKQCQAQLE 222 >gi|206579040|ref|YP_002236426.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae 342] gi|288933408|ref|YP_003437467.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola At-22] gi|290511541|ref|ZP_06550910.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55] gi|226702656|sp|B5XSX9|PNP_KLEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|206568098|gb|ACI09874.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae 342] gi|288888137|gb|ADC56455.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola At-22] gi|289776534|gb|EFD84533.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55] Length = 711 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTIDEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PVKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 69.4 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGK 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E + +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKSSKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 226 >gi|312972565|ref|ZP_07786738.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1827-70] gi|310332507|gb|EFP99720.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1827-70] Length = 595 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 199 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 258 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 259 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 313 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 314 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 360 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 361 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 419 Query: 233 LQKDVIS 239 + + I+ Sbjct: 420 VMEQAIN 426 >gi|163847604|ref|YP_001635648.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus aurantiacus J-10-fl] gi|222525460|ref|YP_002569931.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus sp. Y-400-fl] gi|187610252|sp|A9WEJ7|PNP_CHLAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|257096674|sp|B9LH03|PNP_CHLSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|163668893|gb|ABY35259.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222449339|gb|ACM53605.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus sp. Y-400-fl] Length = 755 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 98/249 (39%), Gaps = 29/249 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55 +R+ GR +++R IS+ V GS + G T +LT TL E+KV T Sbjct: 320 IRVDGRALDEIRPISIEVGVIPRVHGSAVFTRGQTQVLTITTLGSPGDEQKVDDLGIETS 379 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +I Y P STG + R G + R+L +V+ I + Sbjct: 380 KRYIH-HYNFPPFSTGEVRRIGTPRRRDIGHG----ALAERSLYAVLPDEKDFPYTIRLV 434 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V+ ++G + A++ G+ ++L D +K VA ++ G++ G Sbjct: 435 SEVLSSNGSSSMASVCGSSLSLMDAGV-------------PIKAPVAGVAMGLITGEDGR 481 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED+ D+D T G + +Q + + + A+ + Sbjct: 482 WRVLTDIQGLEDALGDMDFKVAGTAKG-VTGLQMDIKTTGITYEIMREAFAQARAGRLFI 540 Query: 231 IKLQKDVIS 239 + +VIS Sbjct: 541 LDKMNEVIS 549 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 80/234 (34%), Gaps = 31/234 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R ++L ++ A+G+ + ++GDT LL T E + + G + Sbjct: 16 RTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVDYEEKMYAVGKI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ--ADGG 124 P GN KRE GR + I R+ R LR + Q+II I D G Sbjct: 76 P---GNFFKRE---GRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDMENDPG 129 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 L + + G V A+ G L G +V+ E + Sbjct: 130 P---------------LAIIAASAALCISDIPFAGPVGAVQMGHLNGQLVVNPKMNEIAD 174 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 +D T ++ G+ E ++D + + LQ+ ++ Sbjct: 175 SRLDLVVAGTKDAVLMVEAGAYE---LTEDEMLQAVIDGHAVCKQICDLQEQLV 225 >gi|310779081|ref|YP_003967414.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus DSM 2926] gi|309748404|gb|ADO83066.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus DSM 2926] Length = 716 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 95/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57 R+ GR+ +++R++ GS + G+T + T TL K + + + Sbjct: 324 RVDGRKTDEIRDLYAEIGTLPLPHGSAMFTRGETQAIVTTTLGTKQDEQLVDGLNEEYYK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G A R+ G + RAL V+ + + + + Sbjct: 384 KFYLHYNFPPYSVGEARFMRAPGRRELGHG----ALAERALSYVMPSTDDFPYTVRVVSE 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A+I G +AL +K HVA I+ G++ Y + Sbjct: 440 ITESNGSSSQASICGGSLALMAAGV-------------PVKSHVAGIAMGLVKEGDDYAV 486 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T++G I +Q + ++ L A D +I + Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTEAG-ITALQMDIKITGIDENVMRIALKQALDARLQIIGV 545 Query: 234 QKDVIS 239 K+ I Sbjct: 546 MKNAIE 551 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 27/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +SL+ +++ + G+ ++++GDT LL+T + + G Sbjct: 14 RTLSLSTGKIARQSCGAVMIQYGDTILLSTVNRSKEGRKGADFFPLTVDFLEKYYAVGKF 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KREA R + R+I R +R + I+ D Sbjct: 74 P---GGFHKREA---RPSTDATLTARLIDRPIRPMFPEGFNYDVHIVNTVFSYDGDNTPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 I G+ AL G VA + M I++ E + Sbjct: 128 YLGIIGSSAAL-------------MLSDIPFLGPVAGVVVAMKGEEFILNPTPKE--LAE 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 N + + V + + + S++ + A D I + + Q++ Sbjct: 173 SPLNLSVAGTKDAVNMVEAG-ASEMSEEVMLKAILFAHDNIKKICEFQEE 221 >gi|332017453|gb|EGI58176.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial [Acromyrmex echinatior] Length = 616 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 89/248 (35%), Gaps = 19/248 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52 +R GR + +R+IS + GS + + G T ++ T TL+ + M I Sbjct: 203 VRCDGRSPSHLRDISCQVDLFNPLHGSAVFQRGQTQVMCTVTLDSLENALKMDATSMLIS 262 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K Y P +T S R G R + +ALR V+ I Sbjct: 263 GVKEKNFFLHYEFPPYATNE----TGNSTRVGRRELGHGALAEKALRPVLPKD--YPFTI 316 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A + G +AL D + + V K + + Y Sbjct: 317 RLTSEVLESNGSSSMATVCGGSLALFDAGIPISSAAAGVAFGLVTK---YNETNTQIEDY 373 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 I+ D+ ED D+D T G Q + L+ + ++I Sbjct: 374 KILTDILGIEDYLGDMDFKIAGTK-GGFTAFQADIKIPGIPLKIIMECLDKTTNAKLEII 432 Query: 232 KLQKDVIS 239 K+ VI Sbjct: 433 KIMNKVIR 440 >gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40] gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus NRRL3357] gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae] gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus NRRL3357] Length = 269 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 8/149 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55 +RL GR+ N++R + + + GS + G+T ++ + + + Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGAAGSS 73 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + + + +R +R S +Q R I + A +S + I I Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSR---IATTLRAAFQSHLHTYLYPHSTISIH 130 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHM 144 V+ ADG AAI +AL D M Sbjct: 131 VSVLSADGSLLAAAINACTLALVDAGIPM 159 >gi|182626381|ref|ZP_02954135.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens D str. JGS1721] gi|177908332|gb|EDT70880.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens D str. JGS1721] Length = 702 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +Q+R I + G+ L G T ++T ATL E ++ I + Sbjct: 312 RPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ A I + + Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + S + + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S+ + A+ ++ K+ Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539 Query: 238 I 238 I Sbjct: 540 I 540 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + + ++ + L+ +GDT +LT E + + + ++ G + Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R I R LR + Q++ ++ D Sbjct: 72 P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A +AL S VAA+ G++ I++ E Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T ++ ++ + +D + D+ D+IK Q++ +S Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222 >gi|115372776|ref|ZP_01460082.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] gi|310823414|ref|YP_003955772.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] gi|115370257|gb|EAU69186.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] gi|309396486|gb|ADO73945.1| Polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca DW4/3-1] Length = 807 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 79/229 (34%), Gaps = 18/229 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59 R+ R ++R I+ V GS + G+T L TL G + Sbjct: 400 RIGARGHAEVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSEDEQRLELLGGMVFK 459 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S R+ G + RALR++ S I + D Sbjct: 460 RFMLHYNFPPFSVNETKPLRGPGRREVGHG----ALAERALRNMAPKSDSFPYTIRVVSD 515 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +AL D ++ + V +G AI + D+ Sbjct: 516 ILESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEGDKVAI---------LSDI 566 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G I +Q + + + L A+ Sbjct: 567 LGDEDHLGDMDFKVCGTSKG-ITSIQMDIKITGLTTEIMSRALEQARQG 614 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 28/229 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLP 67 E+S+ ++K A+G+ +V++GDT LL TA + ++ +T EY Sbjct: 97 ELSIEVGRLAKQADGAVVVRYGDTMLLVTAVSARE----KKDVDFLPLTVEYQEKLYSAG 152 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 R G+ KRE GR + R++ R+ R + QII + + Sbjct: 153 RIPGSYFKRE---GRLTEKETLASRLVDRSCRPLFPDGYAYETQIIASVVSAEPENEGDI 209 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 ITGA AL + G +A I G + G + + + D+ Sbjct: 210 HGITGASAAL-------------WVSDIPFNGPIAGIRVGRVDGKFVANPTLKQREQSDI 256 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D ++ IV V+G AE S+ A L K + + +Q + Sbjct: 257 DLVMAVSREA-IVMVEGGAEE--VSEADMVAALEFGKQAVQPALDIQDE 302 >gi|83644105|ref|YP_432540.1| polynucleotide phosphorylase/polyadenylase [Hahella chejuensis KCTC 2396] gi|123726449|sp|Q2SMK9|PNP_HAHCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|83632148|gb|ABC28115.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Hahella chejuensis KCTC 2396] Length = 703 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 92/249 (36%), Gaps = 28/249 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 R+ GR +R++ + V GS L G+T L TATL + + K Sbjct: 316 RIDGRDTKTVRDLKIEVGVLPNTHGSALFTRGETQALVTATLGTMRDVLMVDALEGEKKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIIDC 116 Y P S G + V R+ G R+ R +++++ L + Sbjct: 376 SFMFHYNFPPYSVGEASRVGGVGRREIGHG----RLARRGVQALMPNLEEFP-YAVRCVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGI-------------PVKAPVAGIAMGLVKEGDSFA 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T+ G + +Q + + + L A ++ Sbjct: 478 VLTDILGDEDHLGDMDFKVAGTEKG-VTALQMDIKINGITDEIMEIALEQALHARLHILG 536 Query: 233 LQKDVISNE 241 VIS Sbjct: 537 EMNKVISEP 545 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 82/229 (35%), Gaps = 28/229 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ LV DT +L TA E E VP + + + T G +P Sbjct: 15 VTLETGRIARQATGAVLVTMDDTVVLVTAVAEKEAVPGRDFFPLSVHYQEKTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + + QII C V+ A+ Sbjct: 74 --GGYFKRE---GRPSEKETLTSRLIDRPIRPLFPDGFMNEVQII--CTVMSANKDVD-- 124 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187 D + + +G +AA G +++ + + Sbjct: 125 ---------PDIASIIGAAAALEISGVPFQGPLAAARVGYTDEDGYLLNPGFKAIENSKL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D T+ ++ +E ++D + A + ++ K+ Sbjct: 176 DMVVAGTEDAVLMV---ESEAKELTEDQMLGAVLFAHQEMQVAVQAIKE 221 >gi|218887594|ref|YP_002436915.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226702648|sp|B8DN07|PNP_DESVM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218758548|gb|ACL09447.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 756 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 27/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR +R I + + A GS L G+T L ATL ++ G +T Sbjct: 322 RIDGRDTKTVRPILIEAGLLPRAHGSALFSRGETKSLVVATLGSSTDSQRMDSLVGDVTK 381 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G E R R + +AL+ V+ + + + Sbjct: 382 KFMLHYNFPPYSVG-----EVKMSRVSRREIGHGALAEKALKPVLPQDDSFPFTLRVVAE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 ++++G + AA+ G ++L D + VA ++ G++ Sbjct: 437 TMESNGSSSMAAVCGGSLSLMDAGV-------------PVTAPVAGVAMGLIKEEGEYLV 483 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED+ D+D T G I VQ + D + A++ ++ Sbjct: 484 LTDILGDEDALGDMDFKIAGTAEG-ITAVQMDIKITGLPTDVMARAMAQAREARLHILAE 542 Query: 234 QKDVIS 239 V+ Sbjct: 543 MAKVLE 548 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 82/226 (36%), Gaps = 25/226 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68 EI L ++ A G+ V+ G T +L TA LE + + + G +P Sbjct: 18 EIILETGRLANQAHGAVWVQCGGTVVLVTACTQPLERDMGFFPLTVDYSEKMYAAGRIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R + R+I R +R + QI+ + + + Sbjct: 77 --GSFFRREI--GRPSERETLVSRLIDRPVRPLFTKGFRDEVQILANVISADQENDSDVL 132 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+TGA AL +G VA G + G +++ E D+ Sbjct: 133 AVTGASAALS-------------ISPIPFEGPVAGARIGRVNGEFVLNPTMKEMEASDLA 179 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 + +V V+G E +D A L A I LI Q Sbjct: 180 I-VIAASRDSVVMVEG--EAHFVPEDVIVAALEWAHKEIQPLIDAQ 222 >gi|88801520|ref|ZP_01117048.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter irgensii 23-P] gi|88782178|gb|EAR13355.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter irgensii 23-P] Length = 746 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 18/230 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56 +RL GR+ +++R I GS + G+T L T TL Sbjct: 317 LRLDGRKTDEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTSRDANKIDMPSFEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + R L+ ++ + + Sbjct: 377 ENFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRGLKGMIPTD--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +AL D M +S + G ++ G + D Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVQM-----IRPVSGIAMGLISDAESGKYA--VLSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED D+D T G I Q + + L A++ Sbjct: 484 ILGDEDHLGDMDFKVTGTSEG-ITACQMDIKVKGLGYEILVNALKQAREG 532 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 79/227 (34%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNT-KHGWITAEYGMLP 67 REIS+ K A GS +V+ G +L T E+K ++ T + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYEQKDLGFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYTAETQVMIQLMSHDED----- 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D + + + + ++ G + G I++ + + D+ Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECAISEARVGRINGKFIINPTRAQLAESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + + ++ V+G E S++ + A + I Q Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMADAIKFAHEAIKVQCAAQ 220 >gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger] Length = 248 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 83/245 (33%), Gaps = 19/245 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTK 55 +RL GR+ N++R + + + GS + G+T +L + + + Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + + + +R +R S +Q R + ++ A +S + I I Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSR---VATILRSAFQSHLHTHLYPHSTISIH 130 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 V+ +DG AA+ +AL D M S + +L Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTASTP-RDPNNDTLDPLLDLSL-- 187 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 E+ + F+ + ++V + + ML + D + ++ + Sbjct: 188 ----PEEQ----ELPFLTVGTTTAMKVAMLTMDSKVHCTYVETMLAVGIDGCKQIREILE 239 Query: 236 DVISN 240 VI Sbjct: 240 GVIKK 244 >gi|296120652|ref|YP_003628430.1| polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus DSM 3776] gi|296012992|gb|ADG66231.1| Polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus DSM 3776] Length = 703 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 92/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKH 56 +RL GR+ + +R +S V GS L G+T L T TL V + + Sbjct: 314 VRLDGRKHDDLRAVSCAASVLPRVHGSSLFTRGETQSLATVTLGTIRDVQRVEGLFGEEA 373 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G R+ G + R++ SV+ I + Sbjct: 374 KAFMLDYYFPPYSVGECKPLRGPGRRELGHG----ALAERSVASVLPSPEKFPYTIRVIS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D+++++G + A++ A +AL D + VA IS G++ Sbjct: 430 DILESNGSSSMASVCSATLALMDAGV-------------PISQPVAGISIGLVKSADRFI 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + S++ A L AK +L+K Sbjct: 477 LLTDIMGDEDHFGDMDFKVAGTQKG-VTGIQLDLKIDGISEEIVRATLEQAKKARIELLK 535 Query: 233 LQKDVISNE 241 I Sbjct: 536 TMLSAIRRP 544 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 93/235 (39%), Gaps = 30/235 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67 R +S+T ++K A G+ +++G+T + A P + + A G P Sbjct: 12 RTLSITTGELAKQAAGAVTIQYGETMVFVAAQNGPSRPGTDFFPLTCDYRERLAAAGKFP 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G +KRE GR R R+ R +R + + Q + +V+ +DG Sbjct: 72 ---GGFIKRE---GRPTLREVLTSRLTDRPIRPLFPEGYIEEVQ--VMSNVLASDGVNDP 123 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 +I GA AL +G +AA+ G++ G I+ + + Sbjct: 124 DVLSIIGASAALCLA-------------PVPFQGPLAAVRVGLIDGEFILFPTQEQIADS 170 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 ++D T+ ++ ++G ++ +D + I +L +LQ ++++ Sbjct: 171 ELDLVVAGTEK-SVLMIEGFGKQ--LPEDQMADAIMFGHRTIVELCQLQLELVAK 222 >gi|260582885|ref|ZP_05850670.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae NT127] gi|260094098|gb|EEW78001.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae NT127] Length = 709 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220 >gi|110803188|ref|YP_698967.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens SM101] gi|123146059|sp|Q0SSE0|PNP_CLOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110683689|gb|ABG87059.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens SM101] Length = 702 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +++R I + G+ L G T ++T ATL E ++ I + Sbjct: 312 RPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAISEIQILDGIGEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ A I + + Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + S + + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S+ + A+ ++ K+ Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539 Query: 238 I 238 I Sbjct: 540 I 540 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + + ++ + L+ +GDT +LT E + + + ++ G + Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R I R LR + Q++ ++ D Sbjct: 72 P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A +AL S VAA+ G++ I++ E Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T ++ ++ + +D + D+ D+IK Q++ +S Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222 >gi|168207524|ref|ZP_02633529.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens E str. JGS1987] gi|168216967|ref|ZP_02642592.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens NCTC 8239] gi|170661139|gb|EDT13822.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens E str. JGS1987] gi|182380890|gb|EDT78369.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens NCTC 8239] Length = 702 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +++R I + G+ L G T ++T ATL E ++ I + Sbjct: 312 RPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ A I + + Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + S + + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S+ + A+ ++ K+ Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539 Query: 238 I 238 I Sbjct: 540 I 540 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + + ++ + L+ +GDT +LT E + + + ++ G + Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R I R LR + Q++ ++ D Sbjct: 72 P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A +AL S VAA+ G++ I++ E Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T ++ ++ + +D + D+ D+IK Q++ +S Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222 >gi|148825487|ref|YP_001290240.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittEE] gi|187610272|sp|A5UAQ6|PNP_HAEIE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148715647|gb|ABQ97857.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae PittEE] Length = 709 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLASVVFGHQQQQVVIEAIKE 220 >gi|187610338|sp|A8AQ53|PNP_CITK8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 711 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 98/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPEMDKFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEA 226 >gi|157148733|ref|YP_001456052.1| polynucleotide phosphorylase/polyadenylase [Citrobacter koseri ATCC BAA-895] gi|157085938|gb|ABV15616.1| hypothetical protein CKO_04562 [Citrobacter koseri ATCC BAA-895] Length = 722 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 98/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 326 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 385 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 386 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPEMDKFPYTVRVVSE 441 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 442 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 488 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 489 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 547 Query: 234 QKDVIS 239 + I+ Sbjct: 548 MEQAIN 553 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 27 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 83 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 84 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 140 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 141 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 187 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ L K+ Sbjct: 188 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEA 237 >gi|329901002|ref|ZP_08272663.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327549290|gb|EGF33865.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 717 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I++ V GS L G+T L ATL + G Sbjct: 320 RIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + R+ G + +R + AL V + S + + + Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAALPPVEEFSY----SVRLVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D M+ + + G A+ + D+ Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKFAV---------LTDI 486 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + +++ L AK+ ++ + Sbjct: 487 LGDEDHLGDMDFKVAGTAKG-ITALQMDIKIQGITKEIMQVALAQAKEGRLHILDKMQQA 545 Query: 238 I 238 + Sbjct: 546 V 546 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 36/233 (15%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67 +++L +++ A G+ LV DT +L T + + T G +P Sbjct: 15 QVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLTVDYVEKTYAAGRIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + QIII + + Sbjct: 75 ---GGFFKRE---GRPSEKETLTSRLIDRPVRPLFPEGYMNEVQIIIHVLSVNPEIDPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ GA AL G V A G + G +++ + + D+ Sbjct: 129 AAMIGASAALS-------------VSGVPFSGPVGAARVGYINGQYVLNPTTTQLKSSDL 175 Query: 188 DANFVMTDSGHIV----EVQGSAE----RATFSQDHFFAMLNLAKDRIADLIK 232 D T++ ++ Q S E F + A+++ I +L++ Sbjct: 176 DLVVAGTEAAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVID----AIHELVR 224 >gi|323183119|gb|EFZ68517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1357] Length = 696 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 300 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 359 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 360 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 414 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 415 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 461 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 462 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 520 Query: 233 LQKDVIS 239 + + I+ Sbjct: 521 VMEQAIN 527 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 1 MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 57 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 58 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 114 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 115 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 161 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 162 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 211 >gi|169342748|ref|ZP_02863788.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens C str. JGS1495] gi|169299254|gb|EDS81324.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens C str. JGS1495] Length = 702 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +Q+R I + G+ L G T ++T ATL E ++ I + Sbjct: 312 RPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ A I + + Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + S + + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S+ + A+ ++ K+ Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539 Query: 238 I 238 I Sbjct: 540 I 540 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + + ++ + L+ +GDT +LT E + + + ++ G + Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R I R LR + Q++ ++ D Sbjct: 72 P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNIPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A +AL S VAA+ G++ I++ E Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T ++ ++ + +D + D+ D+IK Q++ +S Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222 >gi|145637206|ref|ZP_01792868.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittHH] gi|145269651|gb|EDK09592.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittHH] Length = 709 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGHQQQQVVIEAIKE 220 >gi|209877665|ref|XP_002140274.1| 3' exoribonuclease protein [Cryptosporidium muris RN66] gi|209555880|gb|EEA05925.1| 3' exoribonuclease protein, putative [Cryptosporidium muris RN66] Length = 295 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 31/258 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R R N++R I++ +GS G T +L T + + +T Sbjct: 45 IRNDSRIPNEVRPINIKTGTVATCDGSAYFSIGRTRVLCTINGPKLTKSSLNEIGLS-VT 103 Query: 61 AEYGMLPRSTGNRVKREAVSGRQ--GGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y + P R +++E + + ++S++ I Sbjct: 104 VDYRLSPFCKKMRQYGNINKSNLNTDYKAEEKYQSLTLEKVIQSIICREKYTRMSIDCYI 163 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +I+ DG +AAI+ +AL D + + + + C + I+D Sbjct: 164 YIIEDDGCALSAAISCLSLALCDAKIEIIGLFSSVTVIAIPNNSEVKSDCKYI---CILD 220 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVE------------VQGSAERATFSQDHFFAML-NLA 223 Y E N ++ +I E V SA+ + F ++ +LA Sbjct: 221 PTYDE-------INL---ENSNISELSIGLCTLRNQVVHLSAKGSAFGDIQTSKLMFSLA 270 Query: 224 KDRIADLIKLQKDVISNE 241 + + K+ + +E Sbjct: 271 EAACTAITNEMKEHLISE 288 >gi|123966596|ref|YP_001011677.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus str. MIT 9515] gi|187610313|sp|A2BXQ9|PNP_PROM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123200962|gb|ABM72570.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 721 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 36/238 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66 REI LT + A G+ +++ GDT LL TAT K + +Y Sbjct: 13 REIRLTTGLYAPQANGAVMIECGDTSLLVTATKTNK----KEAADFLPLICDYEEKLYAA 68 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122 R G ++RE GR R+ I R+I R +R + + QI+ C + AD Sbjct: 69 GRIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPIWMRDEIQIVASCLSLDERVPAD 125 Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182 A+TGA +A G +AA+ G+L I++ Y E Sbjct: 126 ----VLAVTGASLA-------------TLLGEIPFYGPMAAVRVGLLGDDFILNPSYREI 168 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D+D + G IV ++ A + S+ ++ + + +LIK Q++++ + Sbjct: 169 EKGDLDIIVAGSPEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKAQENLLKD 223 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 31/251 (12%) Query: 2 RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR +++R+IS + K GS + + G T +L+T TL P + + Sbjct: 323 RVDGRDLDEVRKISAKAGILPKRVHGSAVFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380 Query: 61 AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 E Y P S G R+ G + RA+ V+ + + Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRTPGRREIGHG----ALAERAIIPVLPGKETFPYVLRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ ++L D LK V+ + G++ Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVSGTAMGLIKEGKE 483 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T+ G I +Q + + A+ + Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPVSIISDAIKKARPARLHI 542 Query: 231 IKLQKDVISNE 241 ++ +D I Sbjct: 543 LEKMQDAIDKP 553 >gi|229844934|ref|ZP_04465071.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 6P18H1] gi|229812068|gb|EEP47760.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 6P18H1] Length = 709 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLLARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220 >gi|219119866|ref|XP_002180684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408157|gb|EEC48092.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 830 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 90/247 (36%), Gaps = 16/247 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R GR +R++++ + GS L G+T + T TL + T Sbjct: 389 LRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIEKLDGTDE 448 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P G + A R+ G + RAL + A I ++ Sbjct: 449 KRFYLQYTFPPSCVGETGRVGAPGRREVGHG----NLAERALIPTIPALADFPYTIRVES 504 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLCGYPI 174 + ++ G + A++ G +AL D ++ + +L KG V+ + + + Sbjct: 505 LITESHGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGMLLGDKGGVSDENAVI-----L 559 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED+ +D D I Q + + + + L A+ L+ Sbjct: 560 SDILGTEDALGTMDFKVA-GDRVGISTFQLDIKCEGLTLETMESALEQARTGRLHLLSEM 618 Query: 235 KDVISNE 241 + VI++ Sbjct: 619 EKVIASP 625 Score = 58.6 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 77/230 (33%), Gaps = 36/230 (15%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA--------EY 63 I + + A G+ + GD+ L T + ++ K + Sbjct: 89 PICIETGKIGRQAAGAVTLTRGDSVLYATTS-------HDKDPKEEIDFCPLSVDYQERF 141 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 ++G KR+ GR R+I R LR ++ Q++ V+ DG Sbjct: 142 SSAGLTSGGYNKRD---GRPAEHEILTCRLIDRPLRPLIQSGWRHETQLL--SWVLSYDG 196 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGED 182 D L + S+ F L VAA+ GM G +V+ + Sbjct: 197 ERSC-----------DPLAIIASASSLFISDVPLHKPVAAVQVGMKDDGTLVVNPTNLQM 245 Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 T ++ T+ ++ ++G+A+ + + + I L + Sbjct: 246 ETSKLNLMVAGTEEA-VLMIEGAAD--FLPESTMIQAVKTGHEAIQVLCQ 292 >gi|148827370|ref|YP_001292123.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittGG] gi|187610273|sp|A5UG34|PNP_HAEIG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148718612|gb|ABQ99739.1| polynucleotide phosphorylase [Haemophilus influenzae PittGG] Length = 709 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A+ G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAVRVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220 >gi|153814912|ref|ZP_01967580.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756] gi|317500424|ref|ZP_07958648.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089569|ref|ZP_08338468.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 3_1_46FAA] gi|145847943|gb|EDK24861.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756] gi|316898179|gb|EFV20226.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330404937|gb|EGG84475.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae bacterium 3_1_46FAA] Length = 695 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 84/250 (33%), Gaps = 26/250 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59 R GR +Q+R ++ + GS + G T + T T + Sbjct: 312 RPDGRAIDQIRPLAAEVDLLPRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRLDGLDESET 370 Query: 60 TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 T Y M + + E R G R + RAL V+ A I + Sbjct: 371 TKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEFPYAIRTVSET 429 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172 +++G T A++ + ++L +K VA IS G++ G Sbjct: 430 FESNGSTSQASVCASSMSLMTAGV-------------PIKAAVAGISAGLVTGDTDDDYL 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI- 231 + D+ ED D+D T G I +Q + ++ ++ K +I Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAISATKKARTYIID 535 Query: 232 KLQKDVISNE 241 ++ IS Sbjct: 536 EIMNKAISEP 545 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + V+K A G+ L+ +GDT +L T+T + + + + ++ G + Sbjct: 12 RTLRVDVDRVAKQANGAVLMHYGDTTVLCTSTASEKPRDGIDFFPLSVEYNERLYAVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G+ + R+I R +R + + + D Sbjct: 72 P---GGFNKRE---GKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +A G ++ G++ G + + + D Sbjct: 126 LTAMLGASLA-------------TSISDIPFDGPISTTQVGLIDGEFVFNPTAAQREVSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ A +D + A + +I Sbjct: 173 LALTVASTKE-KVIMIEAGANEVP--EDRMIEAIFAAHELNQKVIA 215 >gi|18310662|ref|NP_562596.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens str. 13] gi|168214487|ref|ZP_02640112.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens CPE str. F4969] gi|81766989|sp|Q8XJS4|PNP_CLOPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|18145343|dbj|BAB81386.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens str. 13] gi|170714049|gb|EDT26231.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens CPE str. F4969] Length = 702 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +Q+R I + G+ L G T ++T ATL E ++ I + Sbjct: 312 RPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ A I + + Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + S + + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S+ + A+ ++ K+ Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539 Query: 238 I 238 I Sbjct: 540 I 540 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + + ++ + L+ +GDT +LT E + + + ++ G + Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R I R LR + Q++ ++ D Sbjct: 72 P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A +AL S VAA+ G++ I++ E Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T ++ ++ + +D + D+ D+IK Q++ +S Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222 >gi|116515160|ref|YP_802789.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285444|sp|Q057K3|PNP_BUCCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|116257014|gb|ABJ90696.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 693 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R+ GR N++R+I + + GS L G+T L +ATL + + Sbjct: 315 LRIDGRINNEVRKIDVRTGILPRVHGSALFTRGETQALVSATLGTSRDAQNLDDLLGDRT 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G ++ R+ +V+ I + Sbjct: 375 DNFLFHYNFPPYSVGEIGIVGSPKRREIGHG----KLAKRSFLAVMPNIEDFPYTIRLVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A++ GA +AL D +K +A I+ G++ Sbjct: 431 EITESNGSSSMASVCGASLALMDAGV-------------PIKSAIAGIAMGLIKENDSYI 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D + G I +Q + + + D + L AK ++ Sbjct: 478 ILSDILGDEDYLGDMDFKVSGSRLG-ITALQMDIKVSGITSDIIRSALYQAKSARLKILD 536 Query: 233 LQKDVI 238 + ++ + Sbjct: 537 IMENTL 542 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 71/225 (31%), Gaps = 27/225 (12%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 I L V + A S L DT +L T T + + T G +P Sbjct: 15 NIILETGVIARQATASVLASMDDTTVLITIVSDNTTIPGQKFFPLVVNYQERTYAAGRIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR I R+I R +R + L QII + Sbjct: 75 ---GGFFRRE---GRPSENEILISRLIDRPIRPLFPKDFLYEVQIIATVISVNPQINPDI 128 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I G+ AL G + A G L I++ + + Sbjct: 129 ISIIGSSAALCLSGL-------------PFLGPIGAARIGFLNNKYILNPSIEKIKKSSL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 D T + I V+ AE + S+D+ + + LI Sbjct: 176 DLVVSGTKN-TIFMVE--AEASILSEDNILNAILFGHESQQSLID 217 >gi|254416087|ref|ZP_05029842.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC 7420] gi|196177020|gb|EDX72029.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC 7420] Length = 715 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 91/251 (36%), Gaps = 29/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54 +R+ GR+ +++R +S + GS L G T +L+T TL + + Sbjct: 322 VRVDGRKLDEVRPVSCQVGLLPSRVHGSGLFNRGLTQVLSTVTLGTPGDAQMLDDLNPEE 381 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + ++ Y P S G + R+ G + RA+ ++ I + Sbjct: 382 EKRYLH-HYNFPPFSVGETKPMRSPGRREIGHG----ALAERAIIPILPPQNEFPYVIRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ +AL D + V+ + G++ Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PITKPVSGAAMGLIKEGDE 483 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D TDSG I +Q + + + AK + Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLPMETVAKAIEQAKPARLHI 542 Query: 231 IKLQKDVISNE 241 ++ I Sbjct: 543 LEKMLAAIDKP 553 Score = 92.1 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 R+I L + A GS L++ GDT +L TAT E + + G +P Sbjct: 13 RDIRLRAGLLAPQAGGSVLIESGDTAVLVTATRSAGREGIDFLPLLVDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR + R+I R LR + QI+ + Sbjct: 73 ---GGFLRRE---GRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA VA+ G +AA+ G++ I++ Y E D+ Sbjct: 127 LAVTGASVAVLQAQI-------------PFYGPMAAVRVGLVGDDFIINPTYREIDNGDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + G ++ V+ A + + + + + DLI Q++++ Sbjct: 174 DLVVAGSPQG-VIMVEAGANQ--LPERDIIEAIEFGYEAVQDLIAAQENLLKE 223 >gi|86131670|ref|ZP_01050268.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis MED134] gi|85818115|gb|EAQ39283.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis MED134] Length = 742 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 82/243 (33%), Gaps = 18/243 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56 +RL GRQ +R I GS + G+T L T TL + Sbjct: 317 LRLDGRQTVDIRPIWCETDYLPSVHGSAVFTRGETQALATVTLGTSRDANQIDMPSHEGE 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG S R+ G + R L+ +V + + Sbjct: 377 ERFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRGLKGMVPDD--CPYTVRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V++++G + A + +A+ D M + + G ++ G + D Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAM-----GLISDAETGKYA--VLSD 483 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T+ G I Q + S + L A+ +++ D Sbjct: 484 ILGDEDHLGDMDFKVTGTEDG-ITACQMDIKVKGLSYEILVNALQQARAGRLHILEKLTD 542 Query: 237 VIS 239 I+ Sbjct: 543 TIA 545 Score = 65.5 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 75/227 (33%), Gaps = 26/227 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 REIS+ K A GS +V+ G +L T + V + A G P Sbjct: 16 REISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYESKDVDFLPLTVDYREKFAAAGRYP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KREA + R++ R LR + Q++I D Sbjct: 76 ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHSETQVMIQLMSHDDD----- 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 + D + + + + ++ G + G I++ + D+ Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLEESDI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D + + ++ V+G E S++ + A + I + Q Sbjct: 177 DM-MIGASAESVMMVEG--EMDEISEEEMADAIKFAHEHIKVQCEAQ 220 >gi|160915053|ref|ZP_02077266.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991] gi|158432852|gb|EDP11141.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991] Length = 735 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GR+ +++R + + GS + G+T +L+ TL I + + Sbjct: 330 VRPDGRKIDEIRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGAMNDNQIIDDVTEVES 389 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + RAL V+ I Sbjct: 390 KRFMHHYNFPPYSVGETGR----MGSPGRREIGHGALGERALAQVLPSVEEFPYTIRTVA 445 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I ++L +K VA I+ G++ Sbjct: 446 EVLESNGSSSQASICAGTMSLMAAGV-------------PIKAPVAGIAMGLIMDESSSN 492 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G I +Q + ++D F L AK + Sbjct: 493 YTVLTDIQGMEDHFGDMDFKVAGTSEG-ITALQMDIKVTGITEDIFREALAQAKVARGQI 551 Query: 231 IKLQKDVISNE 241 ++ IS Sbjct: 552 LENMLAAISEP 562 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 29/231 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R I++ ++K A GS LV++GDT +L+ AT +E + + G + Sbjct: 24 RGITVETGEIAKQAGGSVLVRYGDTVVLSAATASKQAKEGIDFFPLTVSFEEKLYSVGKI 83 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR + RMI R +R + Q++ + D T Sbjct: 84 P---GGFLRRE---GRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQDCSTE 137 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA +AL G +A + G + G +++ + D Sbjct: 138 MAAMFGASLALC-------------VSDIPFNGPIAGVIVGRINGEYVINPTPAQMEESD 184 Query: 187 VDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + T + ++VE A +++ + + I L+ Q++ Sbjct: 185 IHLTVAGTKYAVNMVE----AGAKEVNEEAMLGAIMFGHEHIKQLVAFQEE 231 >gi|16272192|ref|NP_438401.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae Rd KW20] gi|1172546|sp|P44584|PNP_HAEIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|1573193|gb|AAC21898.1| polynucleotide phosphorylase (pnp) [Haemophilus influenzae Rd KW20] Length = 709 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +++ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKE 220 >gi|160947658|ref|ZP_02094825.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270] gi|158446792|gb|EDP23787.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270] Length = 702 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 96/251 (38%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R R+ +++R+IS R + GS L G T +LT A E +V + + Sbjct: 311 IRPDDRELDEVRKISCERGLLPRTHGSGLFTRGQTQVLTLTTLGAPGEVQVLDGVIDEDD 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G+ + R+ G + RAL V+ + + Sbjct: 371 KRYMHQYNFPPFSVGDVRPLRSPGRREIGHG----ALAERALVPVLPSEEEFPYTMRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V+ ++G + A+I G+ ++L D +K VA I+ G++ Sbjct: 427 EVLSSNGSSSQASICGSTLSLLDAGV-------------PIKDSVAGIAMGLIKDEKTNK 473 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G I +Q + S++ L AK + Sbjct: 474 IAILTDIQGLEDHFGDMDFKVAGTKDG-ITALQMDIKIDGISREILATALEKAKRARLHI 532 Query: 231 IKLQKDVISNE 241 + + D I+ Sbjct: 533 LSIMNDCIATP 543 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 27/224 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 RE+ +T V++ A GSCLV+ G+T +L A E V + + G + Sbjct: 12 RELKVTIGKVAEQANGSCLVQCGETVVLVNACASKEPREGVDFFPLSCDFEEKLYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR +S R+I R LR + Q+I ++ D Sbjct: 72 P---GGFIKRE---GRPSEKSILTSRLIDRPLRPLFPEGYRNDVQVIATALSVEQDNQPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ +AL G +++ G + G +++ + Sbjct: 126 ILAMIGSSIAL-------------TISDIPFNGPTGSVNVGYVDGEYVINPTIAQREKSR 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 ++ T I+ V+ A+ S++ + A + I + Sbjct: 173 LNITVSGTKDA-IMMVEAGAD--ILSEEEVLNAILFAHEEIKSI 213 >gi|291557792|emb|CBL34909.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum V10Sc8a] Length = 705 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 26/221 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR ++MR ++ + GS L G T ++T TL I + Sbjct: 316 RVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGPVSDSQKLDGIDEEETK 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G S G R + RAL V+ I + + Sbjct: 376 RYMHHYNFPAYSVGETK----ASRGPGRREIGHGALAQRALEPVIPPVEEFPYAIRLVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V+ ++G T A+I G+ ++L D +K VA ISCG++ Sbjct: 432 VLSSNGSTSQASICGSTLSLMDAGV-------------PIKSPVAGISCGLITEGDRWMT 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 +VD+ ED D+D T G I +Q + + + Sbjct: 479 MVDIQGLEDFFGDMDFKVGGTHKG-ITAIQMDLKIDGLTPE 518 Score = 79.4 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 32/235 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 RE+ + V A GSC V +G+T ++ T E V + + G + Sbjct: 15 RELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPLAVDYEEKLYAVGKI 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R++ R +R + I++ + + Sbjct: 75 P---GGYLKRE---GRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLAVDPETQPE 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +A+ G + IS G++ G ++ D + + D Sbjct: 129 IIAMIGASIAVS-------------ISDIPWNGPIGGISVGLVDGEIVLMPDAKQRAKSD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-----LIKLQKD 236 + ++ +V ++ A D + + I + ++Q + Sbjct: 176 LQLTVASSEK-KVVMIEAGANE--VDDDTMLKAIMAGHEEINKSLIPFIKQIQAE 227 >gi|291530699|emb|CBK96284.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum 70/3] Length = 705 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 26/221 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR ++MR ++ + GS L G T ++T TL I + Sbjct: 316 RVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGPVSDSQKLDGIDEEETK 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G S G R + RAL V+ I + + Sbjct: 376 RYMHHYNFPAYSVGETK----ASRGPGRREIGHGALAQRALEPVIPPVEEFPYAIRLVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V+ ++G T A+I G+ ++L D +K VA ISCG++ Sbjct: 432 VLSSNGSTSQASICGSTLSLMDAGV-------------PIKSPVAGISCGLITEGDRWMT 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 +VD+ ED D+D T G I +Q + + + Sbjct: 479 MVDIQGLEDFFGDMDFKVGGTHKG-ITAIQMDLKIDGLTPE 518 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 83/235 (35%), Gaps = 32/235 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 RE+ + V A GSC V +G+T ++ T E V + + G + Sbjct: 15 RELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPLAVDYEEKLYAVGKI 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R++ R +R + I++ + + Sbjct: 75 P---GGYLKRE---GRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLAVDPETQPE 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +A+ G + IS G++ G ++ + + + D Sbjct: 129 IIAMIGASIAVS-------------ISDIPWNGPIGGISVGLVDGEIVLMPNAEQRAKSD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-----LIKLQKD 236 + ++ +V ++ A D + + I + ++Q + Sbjct: 176 LQLTVASSEK-KVVMIEAGANE--VDDDTMLKAIMAGHEEINKSLIPFIKQIQAE 227 >gi|145628545|ref|ZP_01784345.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae 22.1-21] gi|145639858|ref|ZP_01795459.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae PittII] gi|144979015|gb|EDJ88701.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae 22.1-21] gi|145271076|gb|EDK10992.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae PittII] gi|301168898|emb|CBW28492.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 10810] gi|309750352|gb|ADO80336.1| Polynucleotide phosphorylase [Haemophilus influenzae R2866] Length = 709 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220 >gi|299144054|ref|ZP_07037134.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518539|gb|EFI42278.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 714 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R +S + GS L G T +L+ ATL + +V + + K Sbjct: 311 IRPDGRKLDEIRHLSSETGILPRTHGSGLFTRGQTQVLSIATLAGLSDVQVIDGLGDDKP 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G+ R+ G + +AL V+ I + Sbjct: 371 KRYIHHYNFPPFSVGDTKPMRGPGRREIGHG----ALAEKALLPVIPTEEEFPYAIRVVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V+ ++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 427 EVLSSNGSSSQASVCGSTLALMDAGV-------------PIKAPVAGIAMGLIEENGITK 473 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S++ L AK ++++ Sbjct: 474 ILTDIQGLEDHFGDMDFKVAGTKEG-ITAIQMDIKVEGISKEVLAVALERAKKARLEILE 532 Query: 233 LQKDVISNE 241 IS Sbjct: 533 HLNTTISEP 541 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 27/224 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + +T V++ A G+CLV++GDT +L T T + + + + G + Sbjct: 12 RTLKVTVGKVAEQANGACLVEYGDTVVLVTVTASKTPRDGIDFFPLSVDFEEKMYAVGKM 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ +S R+I R +R + Q++ + D Sbjct: 72 P---GGFIKRE---GKPSEKSILSSRLIDRPIRPLFPEGYRNDVQVVATVLSVDQDCQPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + G+ +AL G ++ G + G IV+ E D Sbjct: 126 IVGMIGSSIALS-------------ISDIPFDGPTGSVLVGYVDGKYIVNPTETEREKSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + T + I+ V+ A S++ + A + I + Sbjct: 173 IYLVVSGTKTA-IMMVEAGA--NIVSEETMLNAILTAHEEIKKI 213 >gi|145631098|ref|ZP_01786873.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae R3021] gi|144983383|gb|EDJ90865.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae R3021] Length = 709 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220 >gi|309972624|gb|ADO95825.1| Polynucleotide phosphorylase [Haemophilus influenzae R2846] Length = 709 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGHQQQQVVIEAIKE 220 >gi|260580886|ref|ZP_05848711.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae RdAW] gi|260092509|gb|EEW76447.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae RdAW] Length = 709 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +++ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKE 220 >gi|145640150|ref|ZP_01795734.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae R3021] gi|229846318|ref|ZP_04466426.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 7P49H1] gi|145274736|gb|EDK14598.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 22.4-21] gi|229810411|gb|EEP46129.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 7P49H1] Length = 709 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGHQQQQVVIEAIKE 220 >gi|119504363|ref|ZP_01626443.1| Polyribonucleotide nucleotidyltransferase [marine gamma proteobacterium HTCC2080] gi|119459871|gb|EAW40966.1| Polyribonucleotide nucleotidyltransferase [marine gamma proteobacterium HTCC2080] Length = 714 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I V A GS L G+T + TL I + G Sbjct: 314 RIDGRDGRTVRPIVCEVDVLDKAHGSALFTRGETQAIGAVTLGSSRDAQIIDALEGERRD 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R+ G R+ R L + + + + + Sbjct: 374 PFMLHYNFPPYSVGEAGRIGFTSRREIGHG----RLARRGLAATLPTEEEFPYTVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ +A+ +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCVGSLAMMAAGV-------------PVKAPVAGIAMGLVKEGNQFAV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T SG I +Q + ++ L A ++ Sbjct: 477 LTDILGDEDHLGDMDFKVAGT-SGGITALQMDIKIEGINEQIMEIALEQAMQARLHILGQ 535 Query: 234 QKDVIS 239 V++ Sbjct: 536 MNSVLA 541 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 32/236 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 EI+L +++ A G+ +V G+T +L T + + + + G +P Sbjct: 14 EITLETGRIARQASGAVMVTMGNTSVLCTVVAAREMRAGQDFFPLSVHYIEKRYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT-- 125 G KREA R + R+I R +R + + Q++ C V+ AD T Sbjct: 74 ---GGFFKREA---RPSEKETLTSRLIDRPVRPLFPNGFMNEVQVV--CTVMSADSETDP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDST 184 A+ G AL G + G +++ +Y Sbjct: 126 DIPAMIGTSAALA-------------ISGCPFNGPIGGARVGFTEAKGYLLNPNYSALKN 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D T ++ +E S+D + A + +IK +++ Sbjct: 173 SQLDMVVAGTSEAVLMV---ESEAQELSEDQMLGAVLFAHQEMQTVIKAISELVEE 225 >gi|68248838|ref|YP_247950.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 86-028NP] gi|145635136|ref|ZP_01790841.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittAA] gi|81336747|sp|Q4QNV7|PNP_HAEI8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|68057037|gb|AAX87290.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae 86-028NP] gi|145267557|gb|EDK07556.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae PittAA] Length = 709 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAVKE 220 >gi|145632472|ref|ZP_01788206.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 3655] gi|144986667|gb|EDJ93219.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae 3655] Length = 709 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEDKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +++ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGHQQQQVVVEAIKE 220 >gi|167750806|ref|ZP_02422933.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702] gi|167656241|gb|EDS00371.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702] Length = 705 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 26/221 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR ++MR ++ + GS L G T ++T TL I + Sbjct: 316 RVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGPVSDSQKLDGIDEEETK 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G S G R + RAL V+ I + + Sbjct: 376 RYMHHYNFPAYSVGETK----ASRGPGRREIGHGALAQRALEPVIPPVEEFPYAIRLVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V+ ++G T A+I G+ ++L D +K VA ISCG++ Sbjct: 432 VLSSNGSTSQASICGSTLSLMDAGV-------------PIKSPVAGISCGLITEGDRWMT 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214 +VD+ ED D+D T G I +Q + + + Sbjct: 479 MVDIQGLEDFFGDMDFKVGGTHKG-ITAIQMDLKIDGLTPE 518 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 32/235 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 RE+ + V A GSC V +G+T ++ T E V + + G + Sbjct: 15 RELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPLAVDYEEKLYAVGKI 74 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR ++ R++ R +R + I++ + + Sbjct: 75 P---GGYLKRE---GRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLAVDPETQPE 128 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +A+ G + IS G++ G ++ D + + D Sbjct: 129 IIAMIGASIAVS-------------ISDIPWNGPIGGISVGLVDGEIVLMPDAEQRAKSD 175 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-----LIKLQKD 236 + ++ +V ++ A D + + I + ++Q + Sbjct: 176 LQLTVASSEK-KVVMIEAGANE--VDDDTMLKAIMAGHEEINKSLIPFIKQIQAE 227 >gi|221134255|ref|ZP_03560560.1| polynucleotide phosphorylase/polyadenylase [Glaciecola sp. HTCC2999] Length = 702 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R + + V GS + G+T L ATL + + + G T+ Sbjct: 314 RIDGRDPAMIRALDVATGVLPRTHGSSVFTRGETQALVAATLGTERDAQMIDELGGTSTS 373 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R +++V+ + + + Sbjct: 374 RFMLHYNFPPYCVGETGFIGSPKRREIGHG----RLAKRGIQAVMPSETDFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ G +AL D +K VA I+ G++ + + Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKSDENFVV 476 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G I +Q + +Q+ L AK+ ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIEGITQEIMQIALKQAKEARLHILGV 535 Query: 234 QKDVISNE 241 I Sbjct: 536 MDQAIGGH 543 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 64/192 (33%), Gaps = 24/192 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L V + A + + DT +L T +++ + +T Y + G Sbjct: 15 VTLETGVVARQATAAVMASMDDTSVLVTVVGKKEA---KADQDFFPLTVNYQEKAYAAGK 71 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KRE GR R+I R +R + S QI+I + T Sbjct: 72 IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPESFKNEVQIVITVVSANPEIPTDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + A G G I++ + E + +D Sbjct: 129 SLIGTSAALAISGI-------------PFNGPIGAARVGYTNGEYILNTRHSEQAESQLD 175 Query: 189 ANFVMTDSGHIV 200 T+S ++ Sbjct: 176 LVVAGTESAVLM 187 >gi|312370650|gb|EFR18995.1| hypothetical protein AND_23239 [Anopheles darlingi] Length = 261 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 18/170 (10%) Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 L V A+GS ++ G+T + + ++P + G + ++ P ++ R Sbjct: 10 LKVGVVSTAKGSAYIELGNTKAIVSVFDPREIPKQSKYCALGELYCDFKFSPFASHLRKT 69 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 ++ R + + + AL V + Q+ + +V++ DG A IT A + Sbjct: 70 PQS-----DTRGRSLAAALASALNPAVCRHLFPNLQLDVFANVLEDDGSVLAAVITAAGL 124 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AL D M D V A + G+L +VD E+ Sbjct: 125 ALADACIPMFDI-------------VTATTAGILGDRILVDPTAEEERLC 161 >gi|157150941|ref|YP_001449663.1| polynucleotide phosphorylase/polyadenylase [Streptococcus gordonii str. Challis substr. CH1] gi|187611296|sp|A8AV53|PNP_STRGC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157075735|gb|ABV10418.1| polyribonucleotide nucleotidyltransferase [Streptococcus gordonii str. Challis substr. CH1] Length = 728 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L+ AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALDQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+D L + +LI Q+++++ Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDVMLEALLKGHQAVKELIAFQEEIVA 222 >gi|289804468|ref|ZP_06535097.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 362 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 19 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 78 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 79 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 133 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ Y Sbjct: 134 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 180 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 181 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 239 Query: 233 LQKDVIS 239 + + I+ Sbjct: 240 VMEQAIN 246 >gi|255524222|ref|ZP_05391181.1| Polyribonucleotide nucleotidyltransferase [Clostridium carboxidivorans P7] gi|296185343|ref|ZP_06853753.1| polyribonucleotide nucleotidyltransferase [Clostridium carboxidivorans P7] gi|255512047|gb|EET88328.1| Polyribonucleotide nucleotidyltransferase [Clostridium carboxidivorans P7] gi|296050177|gb|EFG89601.1| polyribonucleotide nucleotidyltransferase [Clostridium carboxidivorans P7] Length = 709 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 87/238 (36%), Gaps = 18/238 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R GR ++R IS + G+ L G T ++T ATL + I + + Sbjct: 312 RPDGRGFEEIRPISCEVGLLPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIGSEEFK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + +AL ++ I + + Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAEKALEPLIPNEDNFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + ++ + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLS-------KEKVLTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 ED D+D T+ G I +Q + S D L+ A+ A L L+K Sbjct: 481 QGIEDFFGDMDFKVAGTEVG-ITAIQFDTKIHGLSNDCIKETLDKARK--ARLFILEK 535 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 26/216 (12%) Query: 29 LVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84 LV +G+T +L A E V + + ++ G +P G +KRE G+ Sbjct: 30 LVSYGETVVLINANASEKPREGVDFFPLSIEYEERLYAVGKIP---GGFIKRE---GKPS 83 Query: 85 GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144 ++ R I R LR + Q++ ++ D AI GA +AL Sbjct: 84 EKAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSVEQDNAPDILAINGASIALS------ 137 Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204 S + A+S G++ +++ + ++ T ++ V+ Sbjct: 138 -------LSSIPFNTPLGAVSVGLVDDEFVINPTLEQRGKSTLNLTVCATKE-RVMMVEA 189 Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 +D + + + ++ Q++ + Sbjct: 190 GGSEIP--EDVMYDAIMFGFEECKKIVAFQEEAMEK 223 >gi|261342610|ref|ZP_05970468.1| polyribonucleotide nucleotidyltransferase [Enterobacter cancerogenus ATCC 35316] gi|288315257|gb|EFC54195.1| polyribonucleotide nucleotidyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 711 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPEADKFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGK 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + D+ I ++ L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEA 226 >gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4] gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4] Length = 237 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 79/241 (32%), Gaps = 26/241 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR EN +R + + A+GS + +L +V R K Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEV-NSARKEKILKSYV 65 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E P G +E + +I A+ S++ + QI + V Sbjct: 66 EVTFTP-----------AFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSD 114 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG + AI A +AL D M L C G VD E Sbjct: 115 DGSIVSCAINAACLALLDAGIEMNGLLGSVTL------------CFNNDGSIYVDPSTEE 162 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 ++ A + + + + + T ++D +F L+ A + +I K + N Sbjct: 163 ENQSKAIAIYSFSSINKNIVLSKT--IGTLTEDQYFKGLDKASESCDLIISFIKLAVKNR 220 Query: 242 V 242 + Sbjct: 221 I 221 >gi|295397816|ref|ZP_06807881.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC 11563] gi|294973951|gb|EFG49713.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC 11563] Length = 702 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 28/241 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR+ +++R ++ + GS L G T L+ ATL EE+ + Sbjct: 319 VRPDGRKIDEIRPLASEVGLLPRTHGSGLFTRGQTQALSVATLAPLSEEQRIDGLAGDVT 378 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G+ + G G R + RAL V+ I + Sbjct: 379 QRFMHHYNFPQYSVGSTGR----YGSPGRREIGHGALGYRALNEVLPSEEDFPYAIRLVA 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V++++G + A+I +AL D +K VA I+ G++ Sbjct: 435 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLIMDEDEEN 481 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T++G I +Q + ++ L+ A ++ Sbjct: 482 YTVLTDIQGLEDHLGDMDFKVAGTENG-ITALQMDIKIKGITEQILREALDQAHKARVEI 540 Query: 231 I 231 + Sbjct: 541 L 541 Score = 95.9 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 27/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R +S+ V+K A + LV++GDT +LT + + + G + Sbjct: 14 RPLSIEYGQVAKQANAAVLVRYGDTVVLTAVVGAKEAKPGQDFFPLQVNYEEKMYSVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I R +R + D Q+I + D Sbjct: 74 P---GGYIKRE---GRPSEHATLTARLIDRPIRPMFDEGFTNEVQVINTVLSVDPDCSPE 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ AL G +A ++ G + G +++ + + D Sbjct: 128 MAAMFGSSAAL-------------TISDIPFDGPIAGVNVGRVNGDFVINPTVEQQAQSD 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ V I V+ SA A S+ L I +L Q + Sbjct: 175 LEL-IVAGSKDAINMVESSA--AELSETEMLEALMFGHTSIRELCYFQDE 221 >gi|254361252|ref|ZP_04977395.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica PHL213] gi|153092748|gb|EDN73791.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica PHL213] Length = 716 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS L G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E +++ A + ++ +I+ K+ + Sbjct: 176 LVVSGTDKAVLMV---ESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224 >gi|296104878|ref|YP_003615024.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059337|gb|ADF64075.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 712 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL I + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQIIDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDADKFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGK 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + D+ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHDQQQVVIQNINELVKEA 226 >gi|261492523|ref|ZP_05989076.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496798|ref|ZP_05993172.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307545|gb|EEY08874.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311682|gb|EEY12832.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 716 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS L G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+I + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E +++ A + ++ +I+ K+ + Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHEQQQVVIENLKEFVKE 224 >gi|22536387|ref|NP_687238.1| polynucleotide phosphorylase/polyadenylase [Streptococcus agalactiae 2603V/R] gi|81455352|sp|Q8E1Z8|PNP_STRA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|22533214|gb|AAM99110.1|AE014201_8 polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 2603V/R] Length = 709 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + A R+ G + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPRLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 538 Query: 233 LQKDVISNE 241 + I+ Sbjct: 539 VLHGAIAEP 547 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 26/230 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68 ++ + V+K A GS +V++GD+ +LT A + +K + + G P Sbjct: 14 KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + Q+I + A Sbjct: 73 --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL G +A + + G I++ E ++ Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A+ S++ L + + +LI Q++++ Sbjct: 175 LTVAGTKEA-INMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 221 >gi|283836290|ref|ZP_06356031.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC 29220] gi|291067653|gb|EFE05762.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC 29220] Length = 710 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 97/247 (39%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQSLDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P G + R+ G R+ R + +V+ DL + + Sbjct: 375 NFLFHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDLDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +AL D +K VA I+ G++ + Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALTLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I + +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEA 226 >gi|325577639|ref|ZP_08147914.1| polyribonucleotide nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325160384|gb|EGC72510.1| polyribonucleotide nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 712 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220 >gi|301154832|emb|CBW14295.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parainfluenzae T3T1] Length = 712 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLEIGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G AL G + A G + +++ E +D Sbjct: 129 AMIGTSAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220 >gi|110799658|ref|YP_696367.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens ATCC 13124] gi|168211432|ref|ZP_02637057.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens B str. ATCC 3626] gi|123344675|sp|Q0TPS3|PNP_CLOP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110674305|gb|ABG83292.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens ATCC 13124] gi|170710551|gb|EDT22733.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens B str. ATCC 3626] Length = 702 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R GR +++R I + G+ L G T ++T ATL E ++ I + Sbjct: 312 RPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ A I + + Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAKFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + S + + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + S+ + A+ ++ K+ Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539 Query: 238 I 238 I Sbjct: 540 I 540 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + + ++ + L+ +GDT +LT E + + + ++ G + Sbjct: 12 RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R I R LR + Q++ ++ D Sbjct: 72 P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A +AL S VAA+ G++ I++ E Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T ++ ++ + +D + D+ D+IK Q++ +S Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222 >gi|291542944|emb|CBL16054.1| polyribonucleotide nucleotidyltransferase [Ruminococcus bromii L2-63] Length = 739 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 28/228 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TKH 56 R+ GR + +R ++ V GS + G T +LT ATL + + T+ Sbjct: 320 RVDGRGMDDIRPLASEVGVIPRVHGSGMFTRGQTQVLTIATLGPVSDKQLLDGIDGETEK 379 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +I Y S G R+ G + RAL V+ + + Sbjct: 380 RYIH-HYNFPSYSVGETKPSRGPGRREIGHG----ALAERALVPVIPSVEEFPYALRLVS 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V+ ++G T +I G+ +AL D +K VA ISCG++ Sbjct: 435 EVLSSNGSTSQGSICGSTLALMDAGV-------------PIKAPVAGISCGLITEGDRWM 481 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 +VD+ ED D+D T G I +Q + + + + L Sbjct: 482 TMVDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDLKISGLTPEMVKEAL 528 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 75/225 (33%), Gaps = 27/225 (12%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + A G+CLV +GDT + T E V + + + G + Sbjct: 20 RPLKVETGKMTQLANGACLVHYGDTTVHVAVTASEKPREGVDFFPLSVDYEEKMYAVGKI 79 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P S R GR ++ R+I R +R + D S I+ + D Sbjct: 80 PGSYLKR------EGRPSEKAILTSRVIDRPIRPLFDKSMRNDVSIVCTVMSVDPDCQPE 133 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +A+ G ++ S GM+ G I++ + Sbjct: 134 IVAMIGASIAIS-------------ISDVPWNGPISGCSVGMIDGEYIINPTEEQRKVSQ 180 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + T + I ++ A S D + + + +I Sbjct: 181 MATTVASTST-RIAMIEAGA--NCVSDDDMYNAIMAGHEANQKII 222 >gi|146313236|ref|YP_001178310.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. 638] gi|187610301|sp|A4WEX9|PNP_ENT38 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145320112|gb|ABP62259.1| Polyribonucleotide nucleotidyltransferase [Enterobacter sp. 638] Length = 711 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGDRTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPEADKFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 75/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKP---GQDFFPLTVNYQERTYAAGK 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFINEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + + G + +++ E +D Sbjct: 130 AMIGASAALSLSGL-------------PFNGPIGSARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQIVIENIKDLVKEA 226 >gi|303286137|ref|XP_003062358.1| 3' exoribonuclease [Micromonas pusilla CCMP1545] gi|226455875|gb|EEH53177.1| 3' exoribonuclease [Micromonas pusilla CCMP1545] Length = 301 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 94/264 (35%), Gaps = 47/264 (17%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR + R++S+ V A+GS LVK G T L A LE G + Sbjct: 24 RPDGRPLARARDVSVANGVVTSADGSALVKIGRTTALAAAKLEPAP-PEPTAPDVGVVEV 82 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113 + P + A GR SQ R I LR +VVDL L + ++ Sbjct: 83 TVELPPMCAAS-----ARPGRPTEESQRCARRIEDVLRDANVVDLRKLCIKRGVYAWRVC 137 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------------------- 153 +D V+ DGG AA+ AL D D ++ +L Sbjct: 138 VDVYVLDHDGGILDAALCAVVGALKDAKVPRVDVDDRGKLVWGGGERERRPGDADADADA 197 Query: 154 -------------SQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200 + H +++ G G +VD ++ E++ ++ + VM + G +V Sbjct: 198 NGDGDASTSAAACVVDVASHPLSLTIGQYDGKLVVDPNFEEEALMESVVSVVMREDGDLV 257 Query: 201 EVQGSAERATFSQDHFFAMLNLAK 224 V S+ + A+ Sbjct: 258 CVSKPGGTREASESTLIKCIAAAR 281 >gi|28210966|ref|NP_781910.1| polynucleotide phosphorylase/polyadenylase [Clostridium tetani E88] gi|75542500|sp|Q895J3|PNP_CLOTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|28203405|gb|AAO35847.1| polyribonucleotide nucleotidyltransferase [Clostridium tetani E88] Length = 705 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 16/244 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 R R +++R+IS + G+ L G T ++T AT+ + I ++ + Sbjct: 312 RPDERAFDEIRKISCEVGLLPRTHGTGLFTRGLTQVMTAATIGPLADVQILDSIEDEEFK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + +AL ++ I + + Sbjct: 372 RYMHHYNFPSYSVGETRPLRGPGRREIGHG----ALAEKALEPLIPSEEDFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + V + + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTNDDLT-------EEKILTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G I +Q + + S + L AKD ++ K+ Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITALQVDTKISGLSDNCIKETLIKAKDARMYILGKIKEC 539 Query: 238 ISNE 241 I Sbjct: 540 IPEH 543 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 82/215 (38%), Gaps = 26/215 (12%) Query: 29 LVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84 LV +GDT +L A+ + + + + ++ G +P G +KRE GR Sbjct: 30 LVSYGDTVVLINANASKEPRDGIDFFPLSVEYEERLYSVGKIP---GGFIKRE---GRPT 83 Query: 85 GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144 + R I R LR + QI+ +++D A+ GA +AL Sbjct: 84 ENAILHARAIDRPLRPLFPKGYRNDVQIVCTVLSVESDNQPDILAMNGASLALC------ 137 Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204 S VA +S G++ G I++ + ++ T ++ ++ Sbjct: 138 -------LSSIPFTTPVANVSVGLINGDFILNPTQSQREESILNLTVSATKE-RVMMIEA 189 Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 AE +D + + ++ +++ Q++ + Sbjct: 190 GAEE--VDEDTMYNAIRFGFEQCQKIVEFQEEAMR 222 >gi|332226543|ref|XP_003262449.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide nucleotidyltransferase 1, mitochondrial-like [Nomascus leucogenys] Length = 778 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 19/213 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR +R +S + K GS L + G T +L T T + ++V I Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 K Y P +T K ++ R+ G + +AL V+ I Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A+ G +AL D + + V K G + Y Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSPVAGVAVGLVTKTDPEK---GEIEDYR 528 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205 ++ D+ ED D+D T+ G I +Q Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQAD 560 Score = 81.3 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ ++ ++A+GS +V+ GDT ++ TA T + A G +P Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 N ++RE + + R+I R++R + Q++ C+++ DG Sbjct: 114 ---TNYLRREIGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA VAL G V A+ G++ G +V+ E S+ Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSS 212 Query: 186 DVDANFVMTDSGHIVEVQGSAER 208 ++ IV ++ SAE Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235 >gi|91205588|ref|YP_537943.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii RML369-C] gi|157827302|ref|YP_001496366.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU 85-389] gi|122425576|sp|Q1RIG0|PNP_RICBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611279|sp|A8GWV2|PNP_RICB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91069132|gb|ABE04854.1| Polyribonucleotide nucleotidyltransferase [Rickettsia bellii RML369-C] gi|157802606|gb|ABV79329.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU 85-389] Length = 744 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I+ + A GS L G+T L ++T + I ++ G Sbjct: 316 RIDGRTTTDIRQITCEVGLLPCAHGSALFTRGETQSLVSSTFGTSLDEQIIDSLEGEYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S + +A R+ G ++ RA+ V+ I + + Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPGRREVGHG----KLAWRAVNPVLPTKTQFPYSIRVVAE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 +++G + A + G+ +AL +K VA I+ G++ Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEDEKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + + L A+ +++ Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKIRGVNFEIMKIALEQARLGRLHILEQ 537 Query: 234 QKDVISNE 241 VIS Sbjct: 538 MNKVISKP 545 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 84/223 (37%), Gaps = 30/223 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++ A+G+ VK G++ LL T A +E + + + + G +P G K Sbjct: 23 IARQADGAVTVKMGNSVLLCTAVTAAKAKEGIGFFPLTINYREMAYAAGKIP---GGFFK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133 RE G+ R + R+I R +R + + + + C V+ D T AI GA Sbjct: 80 RE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--FVTCTVLSYDPETPVDILAIIGA 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 AL VAA G++ G + T +D Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFFLHPTLDLLKTSQLDLVVAG 181 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+ ++ V+ +E S++ A + D ++ + K+ Sbjct: 182 TND-SVMMVE--SEAHLLSEEQMLAAVKFGFDSFQPVVNIIKE 221 >gi|261749590|ref|YP_003257276.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497683|gb|ACX84133.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 710 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 29/247 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +RL GR+ Q+R I GS L G+T LTT TL + + Sbjct: 323 IRLDGRKSQQIRPIWSIVDYLPEVHGSALFSRGETQSLTTVTLGSSLDANKIDNVIMENQ 382 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG VS R+ G + RAL++V+ + I + Sbjct: 383 EKFYLHYNFPPFSTGEIRPIRGVSRREIGHG----NLAQRALKNVIPDN--NPYTIRVVS 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D+++++G + A + A +AL D +E V+ IS G+ Sbjct: 437 DILESNGSSSMATVCAASLALMDAGIAIE-------------NPVSGISMGLFTDKEKKV 483 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED ++D T +G I Q ++ + D +L A + ++ Sbjct: 484 ILSDIMGEEDGFGELDFKITGTKNG-ITACQMDVKKIQGLTNDLLSQILMQALEGRLFIL 542 Query: 232 KLQKDVI 238 K + + Sbjct: 543 KKMLETL 549 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 27/233 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGMLP 67 I + +++ A+G+ +V+ +T LL T + +++ I + + G +P Sbjct: 16 PIVIETGKIARQADGAAIVRAKNTILLATVVVSKEIKNEINFLPLTVDYREKYSASGKIP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR R++ R LR S QI+I ++ D Sbjct: 76 ---GGFIKRE---GRPSDEEILTMRLVDRVLRPTFSESFRNEIQIMIS--LLSYD----- 122 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 L D L + + G ++ I + G I++ + D+ Sbjct: 123 ------KTVLPDELAGLAASTALSVAGIPFNGPISEIRIIRVNGKFIINPSLDQLEKADI 176 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D V I+ ++G E ++ F +N+A + I I+ QK ++ Sbjct: 177 DL-IVGASEHSIIMIEG--EMKEITEKEFLKAINIAHNAIKPQIEAQKKLVKK 226 >gi|293391608|ref|ZP_06635942.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952142|gb|EFE02261.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 743 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R + + V GS + G+T L ATL + I + G Sbjct: 348 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 407 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 408 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 463 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 464 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEDKFVV 510 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 511 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGV 569 Query: 234 QKDVI 238 + I Sbjct: 570 MEQAI 574 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 49 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 107 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 108 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 162 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E +D Sbjct: 163 AMIGASAALS-------------LSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLD 209 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E +++ A + + +I+ K++++ Sbjct: 210 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAE 258 >gi|260910888|ref|ZP_05917531.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260634996|gb|EEX53043.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 741 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR IS+ V+K A+GS +V+ G+T LL T ++ VP Sbjct: 11 PDGRT------ISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ G R++ R LR + + ++ ++ ++ Sbjct: 65 EQYSAAGRFPGGFTKRE---GKPGDNEILTSRLVDRVLRPLFPSN--YHAEVYVNVMLLS 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V D L + S +++ + + G +V+ + Sbjct: 120 ADG-----------VDQPDALAGLAASSAMACSDIPFDFYISEVRVARVNGEYVVNPTFE 168 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E ++ L +A + I + +Q++ ++ Sbjct: 169 QMKEADMDIMVGATKD-NIMMVEG--EMDEVTEQDLIQALKVAHEAIKPMCTMQEE-LAK 224 Query: 241 EV 242 E+ Sbjct: 225 EL 226 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59 RL GR+ +++R I GS + G+T L+T TL K+ + + ++ Sbjct: 325 RLDGRKTDEIRPIWCEVNSLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYM 384 Query: 60 T--AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + R L+ + + + Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPAD--YPYTVRVVSQ 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D LK V+ I+ G++ Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGV-------------PLKKPVSGIAMGLIKNPGEEKY 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + Q + S + L AK ++ Sbjct: 486 AILSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 544 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 545 GKLTETIAEP 554 >gi|254466440|ref|ZP_05079851.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I] gi|206687348|gb|EDZ47830.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I] Length = 703 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR +R+I + GS L G+T L TL + HG + Sbjct: 310 RIDGRDTTTVRQIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RAL++V+ I + + Sbjct: 370 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 425 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172 + +++G + A++ G +++ D LK VA ++ G++ G Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGSYA 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T++G I +Q + A + + L AKD ++ Sbjct: 473 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRLHILN 531 Query: 233 LQKDVISN 240 +S Sbjct: 532 EMGKALSE 539 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 39/234 (16%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 ++L V++ A+GS + G+T ++ T + +T Y + Sbjct: 8 LTLETGKVARQADGSVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 64 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126 G KREA R + R+I R +R + ++++ C V+ D Sbjct: 65 VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 119 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ A AL G +A G + G +++ D D Sbjct: 120 IVAMIAASAALTISGA-------------PFMGPIAGARVGFVDGEYVLNPTV--DDMQD 164 Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + N V ++ V+ +E ++ +N A ++I +I L Sbjct: 165 LRLNPEQRLDLVVAGTKNAVMMVE--SEAYELTEAEMLGAVNFAHEQIQPVIDL 216 >gi|329768891|ref|ZP_08260319.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325] gi|328837254|gb|EGF86891.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325] Length = 618 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR ++R ++ V GS L G T L TL +E++ + ++ Sbjct: 318 VRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL V+ I I Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHG----ALGERALAQVIPSKEDFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A I +AL +K VA I+ G++ Sbjct: 434 EILESNGSSSQATICSGSMALMAAGV-------------PIKAQVAGIAMGLVKKDEHYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L A+ ++ Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTTDG-ITALQMDIKIDGLSEQILKESLEQARIGRLQILD 539 Query: 233 LQKDVIS 239 + IS Sbjct: 540 HMNETIS 546 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 25/222 (11%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 + A + +VK+GDT +LTTA ++ V + + G +P G ++RE Sbjct: 26 RQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIP---GGFLRRE- 81 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 GR G + R+I R +R + + Q+I ++ D AA+ Sbjct: 82 --GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMAAML------- 132 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198 + + KG +A ++ G + G I++ + + ++D T S Sbjct: 133 ------GSSLSLSVSNIPFKGPIAGVTVGYIDGEYIINPNIEQLEKSEIDLKVAGT-SDA 185 Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 I V+ A+ S++ + + I LI Q+ ++ Sbjct: 186 INMVEAGAKE--VSEEIMLNAIMFGHEEIKRLIAFQQQIVEE 225 >gi|327404361|ref|YP_004345199.1| polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM 16823] gi|327319869|gb|AEA44361.1| Polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM 16823] Length = 719 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 28/233 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR+ +++R I GS + G+T LTT TL K+ + + Sbjct: 319 RLDGRKFDEIRPIWAEVDYLPMVHGSAVFTRGETQSLTTLTLGGKMDEQLIDGVTFHGTE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG S R+ G + RAL+ V+ + I + D Sbjct: 379 KFLLHYNFPPFSTGEAKPLRGTSRREIGHG----NLALRALKPVLPAD--NAYTIRLVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDGGVQ-------------IKAPVSGIAMGLVADEGKFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D T G I Q + + L+ A+ Sbjct: 480 LSDILGDEDHLGDMDFKVTGTSKG-ITACQMDIKVDGLPYEVLIQALDQARAG 531 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 29/228 (12%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 EIS+ K A+GS +++ G+T LL T ++ V + A G P Sbjct: 15 EISIETGKLAKQADGSVVLQMGNTVLLATVVAAPEAKDGVDFLPLTVDYREKYAAAGRFP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +REA R + R++ RALR + Q++I ++ DG Sbjct: 75 ---GGFFRREA---RPSETEILVMRLVDRALRPLFPDDYHAEVQLMI--QLLSYDG---- 122 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 V D L + + G ++ + G + G IV+ E + D+ Sbjct: 123 -------VNNPDALCGLAASAAIAVSDIPFNGPMSEVRVGRINGEWIVNPSMEEMKSADI 175 Query: 188 DANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D T +++E E S+ + +A I + + Q Sbjct: 176 DMMVAGTMKDVNMIE----GEFQEISELEMVEAIKIAHAAIKEQCQFQ 219 >gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum] gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum] Length = 233 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 84/243 (34%), Gaps = 25/243 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL+GR + Q+R + + + A+GS T +L +V R K Sbjct: 9 RLNGRTQGQLRSMESEQSLLNKADGSAKFSQNKTSVLAAVYGPIEV-NSARKEKILKSYV 67 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 E P G +E + ++ A+ SV+ + Q+ + V Sbjct: 68 EVTFTP-----------ALGNTTYLDKEKELLVKNAVESVILTTLHPRTQVSVIIQVYSD 116 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDYG 180 DG + +I A +AL D M L + VD D Sbjct: 117 DGSIVSCSINAACLALLDAGIEMNGLIGSITLMNEDDDE-------DNNKCLMIVDPDLN 169 Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E++ A F ++S +IV S T ++D +F L A+ +I K + Sbjct: 170 EENNSKAMAIFAFSSNSNNIV---MSKTIGTLTEDQYFECLKAAR-GCDSIIAYMKLAVK 225 Query: 240 NEV 242 N + Sbjct: 226 NRI 228 >gi|261868717|ref|YP_003256639.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414049|gb|ACX83420.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 743 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R + + V GS + G+T L ATL + I + G Sbjct: 348 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 407 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 408 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 463 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 464 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEDKFVV 510 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 511 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGV 569 Query: 234 QKDVI 238 + I Sbjct: 570 MEQAI 574 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 49 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 107 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 108 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 162 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + G +++ E +D Sbjct: 163 AMIGASAALS-------------LSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLD 209 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E +++ A + + +I+ K++++ Sbjct: 210 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAE 258 >gi|296273302|ref|YP_003655933.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis DSM 7299] gi|296097476|gb|ADG93426.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis DSM 7299] Length = 725 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 30/247 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54 +R GR +R IS+ + A SCL G+T L ATL + ++T Sbjct: 334 VRADGRGLKTVRPISIDTNILPSAHSSCLFTRGETQALVVATLAGAKDGQMFETLNEKST 393 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y S G V R+ G + RAL + +D + + + Sbjct: 394 SMENFMVHYNFPGFSVGEAKPMFGVGRRELGHG----NLGKRALEATIDRDF--ADTVRL 447 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 ++++++G + A + G +AL + G VA ++ GM+ Sbjct: 448 VSEILESNGSSSMATVCGGSLALKAAGV-------------PISGLVAGVAMGMVVEGDK 494 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D +G I +Q + L AK+ + Sbjct: 495 HCVLTDIMGLEDHDGDMDFKVAGPKTG-ITALQMDIKLGGIELSVLKEALLQAKEGREHI 553 Query: 231 IKLQKDV 237 + L ++ Sbjct: 554 LTLMEEA 560 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 42/232 (18%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75 V+K A GS L K G+ +L T E P + +T +Y + G K Sbjct: 21 VAKQANGSVLAKCGNAVILATVVSEFDNPG---SEDFTPLTVQYIEKAYAAAKIPGGFFK 77 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE+ + R+I R+LR + + I + V+ AD Sbjct: 78 RES---KPSELETLTSRIIDRSLRPLFPKGYVYPTTITV--MVLSADKDVD--------- 123 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 L + + + +K VA + + G IV+ + + +D +V Sbjct: 124 --LQTLALNAASAALYTSNIPVKKSVAGVRIAKIDGEYIVNPNVTDMVNSTLDL-YVAGS 180 Query: 196 SGHIVEVQGSA------------------ERATFSQDHFFAMLNLAKDRIAD 229 ++ ++ A + +++ +++A+ + + Sbjct: 181 KDELLMIEMRAISSEDMVEVDIEAFSKIHKTNEMTEEELVEAISIAQIALKE 232 >gi|312865445|ref|ZP_07725672.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei F0415] gi|311098963|gb|EFQ57180.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei F0415] Length = 825 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 87/246 (35%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GRQ +++R + GS L G T L+ TL E K+ + Sbjct: 317 IRPDGRQVDEIRPLEAEVDFLPQVHGSGLFTRGQTQALSVLTLAPMSESKIVDGLDPEYR 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSFEDFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + + L AK +++ Sbjct: 480 ILTDIQGLEDHFGDMDFKVAGTRQG-ITALQMDIKISGITPEILKEALAQAKKARYEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEQTI 544 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 86/232 (37%), Gaps = 26/232 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLPR 68 + + V+K A G+ +V +GD+ +L AT+ +K+ + + G P Sbjct: 14 PLVVEIGQVAKQANGAAVVHYGDSTVLCAATMSKKMARTDFFPLQVNYEEKMYAAGKFP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+I R +R + Q+I D A Sbjct: 73 --GGFMKRE---GRPSADATLTARLIDRPIRPLFAQGFRNEVQVINTVLSYDPDASAPMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ + +AL +G +A + L G I++ + ++D Sbjct: 128 AMFASSLALC-------------ISDIPFEGPIAGVQVAYLDGEFIINPTAQQKEASNLD 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T I V+ A+ S+D L I +LI Q+++++ Sbjct: 175 LTVAGTKDA-INMVESGAQE--LSEDIMLEALLKGHQAIQELIAFQEEIVAT 223 >gi|22299736|ref|NP_682983.1| polynucleotide phosphorylase/polyadenylase [Thermosynechococcus elongatus BP-1] gi|81742443|sp|Q8DGW9|PNP_THEEB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|22295920|dbj|BAC09745.1| polyribonucleotide nucleotidyltransferase [Thermosynechococcus elongatus BP-1] Length = 715 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55 +R+ GR+ +++R I V GS L G T +++ TL + Sbjct: 322 VRVDGRRLDEVRPIWCEVGVLPERVHGSALFNRGLTQVMSVTTLGSPADAQALDDLHPED 381 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G + R+ G + RAL V+ I + Sbjct: 382 SKRYLHHYNFPPYSVGEVKPLRSPGRREIGHG----ALAERALEPVLPPKEEFPYVIRVV 437 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ +DG T ++ G+ ++L D ++ V+ + G++ Sbjct: 438 SEVLSSDGSTSMGSVCGSTLSLMDAGV-------------PIRKPVSGAAMGLIKEGNEV 484 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D TDSG I +Q + + A+ ++ Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLPVAVIQQAIEQARPARLHIL 543 Query: 232 KLQKDVISNE 241 + V+ Sbjct: 544 EKMLAVLDKP 553 Score = 94.8 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 R+I + + + A GS L+ G+T +L TA E + + G +P Sbjct: 13 RDIKVVLQKFAPQAAGSILISSGETAVLVTANRAAAREGIDFLPLVVDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR ++ I R+I R LR + Q++ + + Sbjct: 73 ---GGFLRRE---GRPPEKAILIGRLIDRPLRPLFPQWLRDDLQVVATTVSLDENAPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA +A+ G +AA+ G++ +++ Y E + Sbjct: 127 LAVTGASIAVLLAQI-------------PFNGPMAAVRVGLVGDEFVINPTYKEIERGGL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + G +V V+ A + ++ A + I DLI+ Q+D++ Sbjct: 174 DLVVAGSPDG-VVMVEAGANE--LPEADMIEAIDFAYEVIRDLIQAQRDLLKE 223 >gi|332708787|ref|ZP_08428758.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L] gi|332352329|gb|EGJ31898.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L] Length = 716 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 27/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55 +R+ GR+ +Q+R +S + GS L G T +L+T TL + Sbjct: 323 VRVDGRKLDQVRPVSCQTSLLPQRVHGSALFNRGLTQVLSTVTLGTPGDAQTLDDLNPED 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G + R+ G + RAL V+ I + Sbjct: 383 EKRYLHHYNFPPFSVGEVKPLRSPGRREIGHG----ALAERALVPVLPPQHEFPYVIRVV 438 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ +AL D + V+ + G++ Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMD-------------SGVPITKPVSGAAMGLIKEGDEV 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D TD+G I +Q + S D + AK ++ Sbjct: 486 RILTDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKITGLSMDTIAQAIEQAKPARLHIL 544 Query: 232 KLQKDVI 238 + VI Sbjct: 545 EKMLAVI 551 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 R+I L + + GS +++ GDT +L TAT E + + G +P Sbjct: 13 RDIRLKVGLLAPQSGGSVMIQSGDTAVLVTATRAPGREGIDFLPLVVDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR + R+I R LR + QI+ + Sbjct: 73 ---GGFLRRE---GRPPEKVILTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA +A+ Q S G +AA+ G+L +++ Y E D+ Sbjct: 127 LAVTGASIAV-------------LQGSIPFYGPMAAVRVGLLGDDFMINPTYKEIENGDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + G ++ V+ A + + ++ + + DLIK Q D++ Sbjct: 174 DLVVAGSPQG-VIMVEAGANQ--LPEQDIIEAIDFGYEAVQDLIKAQHDLLEE 223 >gi|288959704|ref|YP_003450045.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510] gi|288912012|dbj|BAI73501.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510] Length = 711 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 18/241 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I V A GS L G+T L TL I + G Sbjct: 321 RIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTLGTSQDEQIIDALEGEYRE 380 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + + + Sbjct: 381 HFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAIHPLLPKKEDFPYTLRVVSE 436 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V +++G + A + G ++L D + + + + H A+ + D+ Sbjct: 437 VTESNGSSSMATVCGTSLSLMDAGAPLARPVAGIAMGLIKEDHGFAV---------LSDI 487 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T+ G + +Q + + +++ L AKD ++ Sbjct: 488 LGDEDHLGDMDFKVAGTEVG-VTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMAKA 546 Query: 238 I 238 + Sbjct: 547 L 547 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 46/240 (19%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ L +++ A G+ LV +GDT +L TA + V + + G + Sbjct: 22 RKLVLETGKIARQANGAVLVTYGDTTVLCTAVAAKAPKPGVDFFPLTVNYQEKAFAAGKI 81 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + + R+I R +R + Q+I C V+ D Sbjct: 82 P---GGFFKRE---GRPTEKETLVSRLIDRPIRPLFADGFRNETQVI--CTVLSHDLEND 133 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ GA AL G + A G G I++ + Sbjct: 134 PDIVSMVGASAALTISGI-------------PFLGPIGAARVGYKNGQYILNPTMDQVED 180 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM---------------LNLAKDRIAD 229 D+D T G ++ +E +++ ++LA++ + Sbjct: 181 TDLDLVVAGTTEGVLMV---ESEAKELTEEVMLGAVMFGHSNFQPVINMIIDLAEEAAKE 237 >gi|221060204|ref|XP_002260747.1| exosome complex exonuclease rrp41 homolog [Plasmodium knowlesi strain H] gi|193810821|emb|CAQ42719.1| exosome complex exonuclease rrp41 homolog,putative [Plasmodium knowlesi strain H] Length = 246 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 27/238 (11%) Query: 2 RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 RL GR+E++ R I + + A+G + G+T LL+ ++ ++ + Sbjct: 13 RLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTEL---KKSEEKCS 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I E + P + + + + EI I +++ L + +I I + Sbjct: 70 IKCEVFLSPFNVYE----KKKKKTKDSVTNEISAYIRNICENIILLDLYKNSEINIFLYI 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 I+ DGG + AAI +AL D +K ++A S L +VD + Sbjct: 126 IERDGGVKHAAINTCILALIDAGIA-------------IKYFISACSVLYLQNRILVDGN 172 Query: 179 YGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 E ++ + V+ ++ I+ ++ AE D F AM+ D +L + K Sbjct: 173 QLEINSGAPELTMVIELNTHKIILLEFDAE---VPIDIFEAMVRTCMDCCVNLGNVMK 227 >gi|551833|gb|AAA83905.1| polynucleotide phosphorilase [Escherichia coli] Length = 711 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 28/247 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+++ +R + + V GS L G+T L TATL + + G T Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLRTARDAQVLDELMGERTD 374 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ D+ + + Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173 ++ +++G + A++ GA +A D +K VA I+ G++ Y Sbjct: 430 EITESNGSSSMASVCGASLASMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476 Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 ++ D+ ED D+D + G I +Q + +++ LN AK ++ Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 Query: 233 LQKDVIS 239 + + I+ Sbjct: 536 VMEQAIN 542 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I ++ +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 >gi|197287234|ref|YP_002153106.1| polynucleotide phosphorylase/polyadenylase [Proteus mirabilis HI4320] gi|227357072|ref|ZP_03841442.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC 29906] gi|226702677|sp|B4F2C3|PNP_PROMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|194684721|emb|CAR46710.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis HI4320] gi|227162764|gb|EEI47727.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC 29906] Length = 709 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + + GS L G+T L TATL I Sbjct: 315 RIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARDAQTIDDIMGEHTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 375 TFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPTIEEFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKESVAGIAMGLVKEGENFVV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G + +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRNG-VSALQMDIKIEGITREIMQVALNQAKSARLHILGV 536 Query: 234 QKDVISNE 241 + IS Sbjct: 537 MESAISQP 544 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 19/150 (12%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G+ +RE GR G I R+I R LR + L Q++ + A+ Sbjct: 75 GSFFRRE---GRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSVNPQVNPDIVAM 131 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL G + G + G +++ E +D Sbjct: 132 IGASAALS-------------LSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLDLV 178 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML 220 T +G ++ V+ +E S++ + Sbjct: 179 VAGT-AGAVLMVE--SEADLLSEEQMLGAV 205 >gi|24213647|ref|NP_711128.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai str. 56601] gi|45658536|ref|YP_002622.1| polynucleotide phosphorylase/polyadenylase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81406860|sp|Q72NX7|PNP_LEPIC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81470924|sp|Q8F7J8|PNP_LEPIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|24194449|gb|AAN48146.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai str. 56601] gi|45601779|gb|AAS71259.1| polyribonucleotide nucleotidyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 698 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 82/228 (35%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 I L +K A G+ + K G+ LL T ++ +T EY S G Sbjct: 14 IVLETGSWAKQAHGAVVYKSGNLVLLATVCAADEA---KEGQDFFPLTCEYTEKLYSVGR 70 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KREA + I R+I R +R + Q+ + V+ ADG A Sbjct: 71 FPGGYFKREA---KPPEHEILISRIIDRPIRPLFPEGYFCEVQLQV--QVLSADGDVSVA 125 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + G +A G + G I++ E D+D Sbjct: 126 GH-----------ALNAASAALAVSDIPFNGPIAGARIGRVNGELILNPTTKEILNSDLD 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T + HIV ++G A+ S + A L A+ IA+ + LQ++ Sbjct: 175 LVVAGTKT-HIVMIEGEAKE--LSNEEMIAALRFAQKHIAEFVTLQEE 219 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 27/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR+ +++R IS+ GS + G T L TL + K Sbjct: 314 RFDGRKLDEIRSISVEINPLPGPHGSAVFTRGQTQSLGVVTLGTGSDNQRYETLEGQKEK 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G V+R + GR R + RAL+ V+ I + + Sbjct: 374 SFMLHYNFPAFSVGE-VRRSSGPGR---REIGHGNLAERALKLVLPKPDEFPYVIRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 +++++G + A++ +AL ++G V+ I+ G+ Sbjct: 430 ILESNGSSSMASVCSGSLALMAAGV-------------PIQGSVSGIAMGLFSDSSGKYA 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I Q + S D ++ A+ ++ Sbjct: 477 VLSDIAGLEDHFGDMDCKIAGTRKG-ITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILD 535 Query: 233 LQKDVISN 240 + + IS Sbjct: 536 IMEKHISK 543 >gi|288929802|ref|ZP_06423645.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 317 str. F0108] gi|288328903|gb|EFC67491.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 317 str. F0108] Length = 742 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR IS+ V+K A+GS +V+ G+T LL T ++ VP Sbjct: 11 PDGRT------ISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ G R++ R LR + + ++ ++ ++ Sbjct: 65 EQYSAAGRFPGGFTKRE---GKPGDNEILTSRLVDRVLRPLFPSN--YHAEVYVNVMLLS 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V D L + S +++ + + G +V+ + Sbjct: 120 ADG-----------VDQPDALAGLAASSAMACSDIPFDFYISEVRVARVNGEYVVNPTFE 168 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E ++ L +A D I + +Q++ ++ Sbjct: 169 QMKEADMDIMVGATKD-NIMMVEG--EMDEVTEQDLIQALKVAHDAIKPMCTMQEE-LAK 224 Query: 241 EV 242 E+ Sbjct: 225 EL 226 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59 RL GR+ +++R I GS + G+T L+T TL K+ + + ++ Sbjct: 325 RLDGRKTDEIRPIWCEVSSLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYM 384 Query: 60 T--AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + R L+ + + + Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPAD--YPYTVRVVSQ 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D LK V+ I+ G++ Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGV-------------PLKKPVSGIAMGLIKNPGEEKY 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + Q + S + L AK ++ Sbjct: 486 AILSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 544 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 545 GKLTETIAEP 554 >gi|212634079|ref|YP_002310604.1| polynucleotide phosphorylase/polyadenylase [Shewanella piezotolerans WP3] gi|226702687|sp|B8CKH8|PNP_SHEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|212555563|gb|ACJ28017.1| Polyribonucleotide nucleotidyltransferase [Shewanella piezotolerans WP3] Length = 701 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T Sbjct: 314 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 373 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + + + Sbjct: 374 RFMLHYNFPPYSVGETGFVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + ++D L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKDIMQIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I + Sbjct: 536 MDQAIGSH 543 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 27/208 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 15 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + + Sbjct: 74 --GGFFKRE---GRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDII 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + G G +++ D + ++D Sbjct: 129 SMIGTSAALA-------------ISGLPFNGPLGVARVGYTNGEYVLNPDVTQLVDSELD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216 T+ G ++ V+ +E A+ ++ Sbjct: 176 LVVAGTE-GAVLMVE--SEAASLPEEVM 200 >gi|207723868|ref|YP_002254266.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum MolK2] gi|206589073|emb|CAQ36035.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia solanacearum MolK2] Length = 752 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 8/160 (5%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V A GS L G+T L ATL +E++ ++ Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M P +TG + + R+ G R+ RAL V+ + I + + Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157 + +++G + A++ G +AL D ++ + +L Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLIL 470 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 ++ + +++ A G+ L+ DT +L T + + + T G +P Sbjct: 15 KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR R+I R LR + Q+++ V+ Sbjct: 75 ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVV--HVL-------- 118 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 +I A D + + G V A G G +++ + + + D+ Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236 D T+ ++ +E S++ + + I + L ++ Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225 >gi|156102006|ref|XP_001616696.1| exosome complex exonuclease rrp41 [Plasmodium vivax SaI-1] gi|148805570|gb|EDL46969.1| exosome complex exonuclease rrp41, putative [Plasmodium vivax] Length = 246 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 27/238 (11%) Query: 2 RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58 RL GR+E++ R I + + A+G + G+T LL+ ++ ++ + Sbjct: 13 RLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTEL---KKSEEKCS 69 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 I E + P + + + + EI I +++ L + +I I + Sbjct: 70 IKCEVFLSPFNVYE----KKKKKTKDSVTNEISAYIRNICENIILLDLYKNSEINIFLYI 125 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178 I+ DGG + AAI +AL D +K ++A S L +VD + Sbjct: 126 IERDGGVKHAAINTCILALIDAGIA-------------IKYFISACSVLFLQNRILVDGN 172 Query: 179 YGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 E ++ + V+ ++ IV ++ AE D F AM+ D +L + K Sbjct: 173 QLEINSGAPELTMVIELNTHKIVLLEFDAE---VPIDIFEAMVRTCMDCCINLGNVMK 227 >gi|329116899|ref|ZP_08245616.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis NCFD 2020] gi|326907304|gb|EGE54218.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis NCFD 2020] Length = 748 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 87/250 (34%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + + Sbjct: 317 VRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDDEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115 Y S G + A R+ G + RAL V+ L I + Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEDFP-YAIRLV 431 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 432 AEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNY 478 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + + L AK +++ Sbjct: 479 TVLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEIL 537 Query: 232 KLQKDVISNE 241 L + I+ Sbjct: 538 DLIQATIAEP 547 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 87/231 (37%), Gaps = 26/231 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68 + + V+K A G+ +V++G++ +LT A + +K + + G P Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+I R +R + Q+I + A Sbjct: 73 --GGFMKRE---GRPSTDATLTARLIDRPIRPMFADGFRNEIQVINTVLSFDENASAPMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL G +A + G + G I++ + + ++ Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEYIINPNKAQLEASLLE 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + I V+ A+ S+D L I +LI Q+++++ Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLRGHKAIQELIAFQEEIVA 222 >gi|218782571|ref|YP_002433889.1| polynucleotide phosphorylase/polyadenylase [Desulfatibacillum alkenivorans AK-01] gi|257096685|sp|B8FCZ0|PNP_DESAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218763955|gb|ACL06421.1| Polyribonucleotide nucleotidyltransferase [Desulfatibacillum alkenivorans AK-01] Length = 712 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH---LLT-TATLEEKVPMWIRNTKHG 57 R+ GR+ +++R I+ + GS L G+T +LT ++ +E+ + + Sbjct: 313 RIGGRRFDEVRPITCEVGILPRTHGSALFTRGETQSLGILTLGSSGDEQRVETLYGDETR 372 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S + S R G + RA++ V+ I I + Sbjct: 373 PFMLHYNFPPYSVREVKRISGPSRRDIGHGG----LSTRAIKEVLPSKEDFDYTIRIVSE 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++++G + A + A +AL D + V+ I+ G++ Sbjct: 429 ILESNGSSSMATVCSASLALMD-------------GGVPITNPVSGIAMGLMAEGDKIVV 475 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I VQ + ++ +++ L A+ +++ Sbjct: 476 LSDILGDEDHMGDMDFKVAGTKDG-ITSVQMDIKISSLTREIMEKALAQARVGRLHILEK 534 Query: 234 QKDVISN 240 IS Sbjct: 535 MLTTISE 541 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 13 EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 + + K A GS +V +G+T L T +++ ++ EY + G Sbjct: 13 PLRIQTGKLAKQASGSVVVSYGETITLVTVVGSQELRP---GIDFVPLSVEYQEKVYAAG 69 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 N +RE GR + R+I R +R + + Q+I + + Sbjct: 70 RIPGNYFRREI--GRPSEKETLTARLIDRPIRPLFPKTWRYETQVIATVLSMDQENDPDM 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 ++ GA AL +A + G + G + + + Sbjct: 128 LSMVGASAALC-------------ISDLPFFTPIACVRVGRIDGELVANPTISQQENC-- 172 Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D N ++ S +V V+G + S++ + ++ + L+++Q++++ Sbjct: 173 DLNIIVAGSRDGVVMVEGGGQ--FISEEEMLDAIYFGQESLEPLLEMQEELMEK 224 >gi|119112780|ref|XP_318517.3| AGAP010791-PA [Anopheles gambiae str. PEST] gi|116118616|gb|EAA13718.3| AGAP010791-PA [Anopheles gambiae str. PEST] Length = 737 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 16/246 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GR + +R+IS + + K GS L + G T + T L+ + + Sbjct: 305 RCDGRGLDDLRKISCSVNLHKPLHGSALFQRGQTQVFCTVALDSPESALRLDPIASLDSG 364 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 + Y P +TG K G G R + + L ++ + Sbjct: 365 MRSKNFFLHYEFPPYATGETGK----IGPIGRREIGHGALAEKGLVPIIPNE--HPFTVR 418 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 + +V++++G + A + +AL D +++ + + + K + + Sbjct: 419 LTSEVLESNGSSSMATVCAGSMALMDAGVPVQEAAAGVAIGLITKYENND-TKHLQDYCI 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + DL ED D+D T G + +Q + L + + ++ L Sbjct: 478 LTDLLGIEDYMGDMDMKVAGTRRG-MTAIQADIKVPGIPLKVVMEALQKSMEARFKILDL 536 Query: 234 QKDVIS 239 + I Sbjct: 537 MDETIG 542 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 85/231 (36%), Gaps = 27/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + ++ +++A+G +V GDT ++ TA ++K +N + +Y + Sbjct: 1 RILKISSGKYARFADGCSVVTIGDTAVMVTAVAKQK----SQNASFLPLVVDYRQKSAAA 56 Query: 71 GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G R+ + G +EI R++ R++R + QI+ + I + Sbjct: 57 G-RIPTNFLRRELGPSEKEILSARLVDRSIRPLFPAEFRYDTQIVCNMLAIDSANPPDVQ 115 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 AI GA AL G V A+ G++ I++ E +D Sbjct: 116 AINGASAALA-------------LSDIPWNGPVGAVRVGLVDNEAIINPTRKEMQLSSLD 162 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQK 235 T +V ++G +++ + +I +LQK Sbjct: 163 LVVTATRQNLVVMLEG--RGNVVNENELRMAIKKGTKEAQLIINGIERLQK 211 >gi|332704834|ref|ZP_08424922.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus str. Walvis Bay] gi|332554983|gb|EGJ52027.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus str. Walvis Bay] Length = 745 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +R +S+ + GS L K G+T L ATL T G IT Sbjct: 321 VRIDGRDLTTVRPLSIEVGLLPQTHGSALFKRGETSSLAIATLGSSRDEQRIETLTGEIT 380 Query: 61 ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S R+ G + RA++ V+ I + Sbjct: 381 KGFMLHYNFPPFCVNEARFLRGPSRREIGHG----NLAERAIKPVLPADGEFPFTIRVVA 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGY-- 172 + ++++G + AA+ G +AL D +K VA I+ G + Sbjct: 437 ETMESNGSSSMAAVCGGCLALMDAGV-------------PIKAPVAGIAMGLAKVDDDYF 483 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + A Q+ L AK+ +++ Sbjct: 484 VLTDILGDEDAMGDMDFKVAGTAEG-VTAIQMDIKIAGIPQEVLARALAQAKEARMLILE 542 Query: 233 LQKDVI 238 ++ Sbjct: 543 EMAKIL 548 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 88/236 (37%), Gaps = 29/236 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +I L + A+G+ LV+ GDT +L TA + + +P + +T Y + + G Sbjct: 18 DIELETGRFANQADGAVLVRSGDTVVLVTA-VTQALP---EDKGFFPLTCNYQEMSYAAG 73 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 +RE GR R + R+I R LR QII + Sbjct: 74 RIPGGYFRREI--GRPSDRETLVSRLIDRPLRPSFPKGFRDEVQIIATVLSADKNVNPDV 131 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA ALH G +A+ G + G + Y + + Sbjct: 132 LAVTGASAALH-------------ISKIPFNGPLASTRVGYVNGGFVAFPTYQNITELSS 178 Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N V+ S +V V+G AE S+D + I L LQ + + ++ Sbjct: 179 -LNMVLAASRNAVVMVEGGAE--FMSEDLLAEAIAFGHKMIIPLFDLQDE-LREKI 230 >gi|108763580|ref|YP_630302.1| polynucleotide phosphorylase/polyadenylase [Myxococcus xanthus DK 1622] gi|123374693|sp|Q1DAM1|PNP_MYXXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|108467460|gb|ABF92645.1| polyribonucleotide nucleotidyltransferase [Myxococcus xanthus DK 1622] Length = 722 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ R + +R I+ V GS + G+T L TL +E+ + Sbjct: 315 RIGDRGHDVVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSDDEQRLEMLGGMAFK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S R+ G + RALR++V S + + D Sbjct: 375 RFMLHYNFPPFSVNETKPLRGPGRREVGHG----ALAERALRNMVPKSESFPYTVRLVSD 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 +++++G + A++ G +AL D ++ + V +G AI + D+ Sbjct: 431 ILESNGSSSMASVCGGTLALMDAGVPLKAPVAGIAMGLVKEGDKIAI---------LSDI 481 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T G I +Q + + + L A+ ++ Sbjct: 482 LGDEDHLGDMDFKVCGTSKG-ITSIQMDIKITGLTTEIMSRALEQARQGRLHILGEMLKT 540 Query: 238 ISN 240 ++ Sbjct: 541 LAE 543 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 87/229 (37%), Gaps = 28/229 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLP 67 E+S+ ++K A+GS +V++GDT LL TA + ++ +T EY Sbjct: 12 ELSIEVGRLAKQADGSVVVRYGDTMLLVTAVSARE----KKDIDFLPLTVEYQEKLYSAG 67 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 R G+ KRE GR + R++ R+ R + QII + Sbjct: 68 RIPGSYFKRE---GRLTEKETLASRLVDRSCRPLFPEGYAYETQIIASVISSDPENEGDI 124 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 ITGA AL + G +A I G + G + + + D+ Sbjct: 125 HGITGASAAL-------------WVSDIPFDGPIAGIRVGRVGGQLVANPTAKQREQSDL 171 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D ++ IV V+G AE S+ A L+ + LQ + Sbjct: 172 DLVMAVSRKA-IVMVEGGAEE--VSEADMVAALDFGFTTAQPALDLQDE 217 >gi|76788173|ref|YP_328934.1| polynucleotide phosphorylase/polyadenylase [Streptococcus agalactiae A909] gi|76799250|ref|ZP_00781422.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 18RS21] gi|77405356|ref|ZP_00782451.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae H36B] gi|77410940|ref|ZP_00787296.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae CJB111] gi|123602514|sp|Q3K3G9|PNP_STRA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|76563230|gb|ABA45814.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae A909] gi|76585403|gb|EAO61989.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 18RS21] gi|77162995|gb|EAO73950.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae CJB111] gi|77176034|gb|EAO78808.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae H36B] Length = 709 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + A R+ G + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 538 Query: 233 LQKDVISNE 241 + I+ Sbjct: 539 VLHGAIAEP 547 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 26/230 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68 ++ + V+K A GS +V++GD+ +LT A + +K + + G P Sbjct: 14 KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + Q+I + A Sbjct: 73 --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL G +A + + G I++ E ++ Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A+ S++ L + + +LI Q++++ Sbjct: 175 LTVAGTKEA-INMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 221 >gi|322785621|gb|EFZ12276.1| hypothetical protein SINV_11817 [Solenopsis invicta] Length = 692 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 19/250 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52 +R GR + +R+IS + GS L + G T ++ TL+ + + M I Sbjct: 278 VRCDGRPMDGIRDISCQVDLFNPLHGSALFQRGQTQVMCAVTLDSLQSALKMDTISMLIS 337 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K Y P +T + R G R + +ALR V+ I Sbjct: 338 GMKEKNFFLHYEFPPYATNE----TGHASRAGRRELGHGALAEKALRPVLPKD--YPFTI 391 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A + G +AL D + + + V K + + Y Sbjct: 392 RLTSEVLESNGSSSMATVCGGSLALLDAGIPISSPTAGVAIGLVTK---CNETNTNIENY 448 Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 I+ D+ ED D+D T G +Q + + + A + +I Sbjct: 449 KILTDILGIEDYLGDMDFKIAGTKRG-FTALQADIKISGVPLKIIMECIQQATNAKLQII 507 Query: 232 KLQKDVISNE 241 K VI Sbjct: 508 KTMNTVIREP 517 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 21/173 (12%) Query: 69 STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 + R+ + G EI R+I R++R + + QI+ + I Sbjct: 27 AAAGRIPTNFLRRELGPSEHEILTSRVIDRSIRPLFPEGFYFNTQIMCNMLAIDGMNDPD 86 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA AL G V A+ GM+ IV+ + Sbjct: 87 VIAINGASAALS-------------VSDIPWNGPVGAVRLGMIDNEIIVNPTRRQIQDSI 133 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQK 235 ++ I+ ++GSA + + L ++ LQK Sbjct: 134 LNLIITAAKQNLIIMLEGSANEIL--EQQLRKAIKLGVKECQSIVAAITNLQK 184 >gi|88705689|ref|ZP_01103399.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis KT71] gi|88700202|gb|EAQ97311.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis KT71] Length = 704 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 28/246 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I+ + A GS L G+T + TL I + G Sbjct: 314 RIDGRDTRTVRQIACEVDILSKAHGSALFTRGETQAIGAVTLGSTRDAQIIDALEGERRD 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116 Y P S G + S R+ G R+ R L +V+ DL I + Sbjct: 374 PFMLHYNFPPYSVGEAGRVGFTSRREIGHG----RLARRGLAAVLPDLEEFP-YTIRVVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ +A+ LK VA I+ G++ Sbjct: 429 EITESNGSSSMASVCVGSLAMMTAGV-------------PLKAPVAGIAMGLVKEGNQFA 475 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G + +Q + ++ L A ++ Sbjct: 476 VLTDILGDEDHLGDMDFKVAGTANG-VTALQMDIKIEGITEQIMEIALEQAMQARLHILG 534 Query: 233 LQKDVI 238 V+ Sbjct: 535 QMNAVL 540 Score = 65.9 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 78/232 (33%), Gaps = 34/232 (14%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ LV +T +L T E E + + G +P Sbjct: 15 VTLETGRIARQATGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAVHYIEKAYSVGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 G KREA R + R+I R +R + + Q+I C V+ AD Sbjct: 74 --GGFFKREA---RPSEKETLTSRLIDRPIRPLFADGFMNEVQVI--CTVMSADKHIDPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 A+ G AL G + A G I++ Y + Sbjct: 127 IPAMIGTSAALA-------------ISGCPFNGPIGAARVGFNESEGYILNPTYDQLPNS 173 Query: 186 DVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ T + VE Q ++D + A + +IK ++ Sbjct: 174 KLEMVVAGTQDAVLMVESQADQ----LTEDQMLGAVLFAHQEMQVVIKAVQE 221 >gi|15836844|ref|NP_297532.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa 9a5c] gi|9105050|gb|AAF83052.1|AE003877_7 polynucleotide phosphorylase [Xylella fastidiosa 9a5c] Length = 719 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I++ V GS L G+T + TL + + G Sbjct: 334 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 393 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ I + Sbjct: 394 ENFLFHYNFPPYSVGECGRFGVPKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 449 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 450 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 496 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 497 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 555 Query: 233 LQKDVIS 239 ++ Sbjct: 556 EMDKALA 562 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL T T E + + G +P Sbjct: 34 VTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 92 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126 G+ KRE GR + I R+I R +R + QII + DG Sbjct: 93 --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 146 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL KG + A G G I++ E Sbjct: 147 -PAMIGASAALSLAGI-------------PFKGPIGAAKIGYNDGQYILNPTVSELKKSQ 192 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ T + ++ +E A S++ + + +I++ Sbjct: 193 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 236 >gi|121998524|ref|YP_001003311.1| polynucleotide phosphorylase/polyadenylase [Halorhodospira halophila SL1] gi|187610274|sp|A1WXU7|PNP_HALHL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|121589929|gb|ABM62509.1| Polyribonucleotide nucleotidyltransferase [Halorhodospira halophila SL1] Length = 702 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 86/244 (35%), Gaps = 18/244 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R +++ V GS + G+T + +TL + + G Sbjct: 322 RIDGRDNQTVRPLNVQAGVLPRTHGSAIFTRGETQAIVVSTLGTGRDAQVIDALEGERRE 381 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G R+ G ++ R + +V+ I + + Sbjct: 382 PFMLHYNFPPYCVGETGFIGTPKRREIGHG----KLAKRGVEAVMPSDEEFPYVIRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V +++G + A + G ++L D ++ + + +G A+ + D+ Sbjct: 438 VTESNGSSSMATVCGTSLSLMDAGVPLKAQVAGIAMGLIKEGDEFAV---------LTDI 488 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D + G + +Q + +++ L+ A+ +++ V Sbjct: 489 LGDEDHLGDMDFKVAGSKDG-VTALQMDIKIDGITREIMEQALDQARSGRLHILEQMNQV 547 Query: 238 ISNE 241 I Sbjct: 548 IDKP 551 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 24/193 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71 +++L V++ A+G+ LV DT +L T + K P R +T Y + G Sbjct: 21 QVTLETGGVARQADGAVLVDMADTVVLVTV-VGRKDPAAAR--DFLPLTVNYQERTYAAG 77 Query: 72 ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 KRE GR + R+I R +R + Q+I + + Sbjct: 78 RIPGGFFKRE---GRPSEKETLTCRLIDRPIRPLFPEGFRQEVQVIATVLSLNDEVDADI 134 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ G AL +G + A G L G +++ + + + D+ Sbjct: 135 PAMIGTSAALALSGI-------------PFEGPIGACRVGHLDGEFVLNPTFSQTAESDL 181 Query: 188 DANFVMTDSGHIV 200 D T ++ Sbjct: 182 DLVVAGTQDAVLM 194 >gi|198401795|gb|ACH87550.1| exosome component 9 [Platynereis dumerilii] Length = 530 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 90/261 (34%), Gaps = 30/261 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 MRL GR R I + + + G C V G T ++ + E P R G + Sbjct: 117 MRLDGRGCYDYRRIKIQFGIDR---GCCQVHLGKTIVMAQTSCEVTTPKQTR-PSEGNVF 172 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QI 112 + P + +GRQ E+ R++ R ++ VD +L I Sbjct: 173 VNVELSPMAAP-----HFEAGRQSDAGVELTRILERCIKESRCVDTESLCIMSGVKVWTI 227 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVA 162 +D V+ +G AA A +L + + ++ + + Sbjct: 228 RVDVHVLNHNGNLIDAASIAAISSLVHFRRPDVSVSGEDVTIHSLEDRDPIPLSVHHMPI 287 Query: 163 AISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 ++C Y ++D E++ +D M I Q + ++ Sbjct: 288 CVTCAFYHKGTYLLIDPTDKEENVMDGKVIVGMNKHREICTFQLTGSMLLL-KEQVLRCS 346 Query: 221 NLAKDRIADLIKLQKDVISNE 241 N+A ++ ++ L + + N+ Sbjct: 347 NMAVVKVGEMTALIEQALQND 367 >gi|28198126|ref|NP_778440.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa Temecula1] gi|28056186|gb|AAO28089.1| polynucleotide phosphorylase [Xylella fastidiosa Temecula1] Length = 719 Score = 101 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I++ V GS L G+T + TL + + G Sbjct: 334 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 393 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ I + Sbjct: 394 ENFLFHYNFPPYSVGECGRFGVPKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 449 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 450 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 496 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 497 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 555 Query: 233 LQKDVIS 239 ++ Sbjct: 556 EMDKALA 562 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL T T E + + G +P Sbjct: 34 VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 92 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126 G+ KRE GR + I R+I R +R + QII + DG Sbjct: 93 --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 146 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL KG + A G G I++ E Sbjct: 147 -PAMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQ 192 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ T + ++ +E A S++ + + +I++ Sbjct: 193 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 236 >gi|295103372|emb|CBL00916.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Faecalibacterium prausnitzii SL3/3] Length = 441 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 31/237 (13%) Query: 12 REISLTRRV---SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYG 64 R + A S L+++G+T ++ E V + N ++ G Sbjct: 25 RPFKVEMGKMCGLSNA--SALIRYGETCVMCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82 Query: 65 MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124 +P G+ ++RE GR G R+ R++ R +R + I + + D Sbjct: 83 RIP---GSFMRRE---GRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A + GA + G + + G++ G +++ + Sbjct: 137 PEIAGMIGASLVTA-------------VSDIPWNGPIGGVQVGLVNGEIVLNPTQEQRKV 183 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 D+ T IV ++ A +D + A I +I+ +++ Sbjct: 184 SDLALTVAAT-MDKIVMIEAGANE--VDEDTMLTAIKTAHVEIKKIIEFINKIVAER 237 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 9/112 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GR N++R ++ + GS + G T +LTT TL + + T Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381 Query: 62 E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALG 108 Y P S G G R + RAL V+ L Sbjct: 382 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGALAERALVPVLPSLEEFP 429 >gi|311695954|gb|ADP98827.1| polynucleotide phosphorylase/polyadenylase [marine bacterium HP15] Length = 727 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 87/248 (35%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + V GS L G+T + T TL + I + G Sbjct: 339 RIDGRDNKTVRPIEIEVGVLPSVHGSALFTRGETQAIVTTTLGTSRDVQIIDALEGERKD 398 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ I + Sbjct: 399 PFLFHYNFPPYSVGEAGRVGTPGRREVGHG----RLAKRGVLAVMPTLEEFPYAIRAVSE 454 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 455 ITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGDKFAV 501 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + L A ++ Sbjct: 502 LTDILGDEDHLGDMDFKVAGTQEG-VTALQMDIKINGITDEIMEIALEQAHAARLHILGE 560 Query: 234 QKDVISNE 241 VIS Sbjct: 561 MNKVISEP 568 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 28/209 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A GS LV D +L T + P + + T G +P Sbjct: 38 VTLETGRIARQATGSVLVTVDDISVLGTVVGAKEAKPGQPFFPLTVNYFEKTYAVGKIP- 96 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + + Q+I T Sbjct: 97 --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPNGFMNEVQVI-------------TT 138 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187 ++ + D + + G + A G ++ + E T + Sbjct: 139 VMSSSKNQDPDIAAMLAASAALSISGIPFDGPIGASRVGYTNERGYFLNPTFEELQTSLL 198 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHF 216 D T+ ++ +E ++D Sbjct: 199 DMVVAGTEDAVLMV---ESEAKGLTEDQM 224 >gi|226329676|ref|ZP_03805194.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198] gi|225202862|gb|EEG85216.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198] Length = 454 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + + GS L G+T L TATL I Sbjct: 60 RIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARDAQTIDDIMGEHTD 119 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + Sbjct: 120 TFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPTIEEFPYTVRVVSE 175 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 176 ITESNGSSSMASVCGASLALMDAGV-------------PIKESVAGIAMGLVKEGDNFVV 222 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G + +Q + +++ LN AK ++ + Sbjct: 223 LSDILGDEDHLGDMDFKVAGSRNG-VSALQMDIKIEGITREIMQVALNQAKSARLHILGV 281 Query: 234 QKDVISNE 241 +D IS Sbjct: 282 MEDAISKP 289 >gi|318083345|ref|NP_001187695.1| exosome complex exonuclease rrp43 [Ictalurus punctatus] gi|308323723|gb|ADO28997.1| exosome complex exonuclease rrp43 [Ictalurus punctatus] Length = 277 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 23/249 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R +L A+GS LVK G+ ++ E P G+I Sbjct: 23 RPDGRELGEFRPTTLNTGSISTADGSALVKIGNATVICGIKAELATPT-ADAPDKGYIVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGG-RSQEIQRMIGRALRSVVDLSAL--GSRQI--IIDC 116 + P + R G Q SQ I +I + +++ L G ++ ++ C Sbjct: 82 NVDLPPLCSS--RFRPGPPGEQAQVASQFIADIIDDS--NIIKKEDLCIGKSKLCWVLYC 137 Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS----------QVLKGHVAAI 164 D+ + DG A I AL + + + L Q+ K VA+ Sbjct: 138 DIMCLDYDGNLPDACIITLLAALKNAQLPKVTINKETDLPEVDVQHKRHLQINKHPVASS 197 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 IVD E+S V ++ + ++ S + ++ A Sbjct: 198 FAVFDDEVIIVDPTTEEESLATALITAVTDENDQLCAFHKPG-GSSLSAEKLQGCISRAV 256 Query: 225 DRIADLIKL 233 R ++ KL Sbjct: 257 TRNREINKL 265 >gi|224006464|ref|XP_002292192.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana CCMP1335] gi|220971834|gb|EED90167.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana CCMP1335] Length = 659 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 94/244 (38%), Gaps = 25/244 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKH 56 +R GR N +R IS T + GS G+T ++ TA++ + VP + Sbjct: 267 LRADGRGTNAVRPISATTPIFPDCVHGSSQFSRGETQVICTASIGAPSDGVPHASPYSDS 326 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y STG + S R+ + +A+ V+ + + C Sbjct: 327 SAF-LHYDFPDFSTGTVKSKGESSA--NRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTC 383 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPI 174 +V ++G + AA G+ +AL D + VA +S G+ + Sbjct: 384 EVTSSNGSSSMAAACGSTLALLDAGVPLV-------------SPVAGVSVGLTPDSKTLL 430 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 +D+ ED D+D T SG ++ +Q + + + L+LAKD ++ Sbjct: 431 LDITGTEDHYGDMDFKVCGT-SGGVLSMQLDV-KNPVTMKVIASALSLAKDGRNAILAAM 488 Query: 235 -KDV 237 K+V Sbjct: 489 GKEV 492 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 32/171 (18%) Query: 74 VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQIIIDCDVIQADGGT 125 +R SG R R+I R +R + + L I+++C+V D + Sbjct: 21 RRRRDNSGPLTDREVLASRVIDRTIRPWLMMGLASSDKAISLPGN-IVVNCEVQSYD--S 77 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 R ++I G + LK G + D E Sbjct: 78 RASSING------------------KKFPVPLKAAACVKLAIQRDGSVVYDPSPNESEDA 119 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + + T ++ E S+ L LA++ I +I+ Q+ Sbjct: 120 KFELLYAGTKDRVLML---EFEDPGVSETTVANALMLAQEAILPIIEQQEQ 167 >gi|255658262|ref|ZP_05403671.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida DSM 20544] gi|260849574|gb|EEX69581.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida DSM 20544] Length = 689 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTK 55 +R GR+ ++R +S + GS L G T +L T T +E+V + Sbjct: 310 IRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQIL-TVTTLGSLGDEQVIDGLGPET 368 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G + R+ G + RAL V+ I + Sbjct: 369 TKHYIHHYNFPGYSVGEARPMRSPGRREIGHG----ALAERALVPVIPSIEEFPYTIRLV 424 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + ++ G+ ++L + +K V+ ++ G++ Sbjct: 425 SEVLESNGSSSMGSVCGSTLSLMNAGV-------------PIKRPVSGVAMGLVKEGDQY 471 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + S++ A L AK Sbjct: 472 TILTDIQGMEDALGDMDFKVAGTTEG-ITAIQMDIKVDGLSREILSAALQQAKRG 525 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 83/229 (36%), Gaps = 27/229 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + ++K A G+ LV++GDT +L TAT E V + + G + Sbjct: 11 RPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDYEEKMYAAGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I R +R + QI+ ++ D Sbjct: 71 P---GGFIKRE---GRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNAPE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G +A + G + +++ E+ Sbjct: 125 LAAMIGASCAL-------------TVSDIPFMGPIAGVRVGRVNDEFVINPT--EEQRKV 169 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 N + S V + + +D + + I L++ Q+ Sbjct: 170 STLNLTVAGSHDAVMMVEAG-ANELPEDVILDAILFGHEEIKRLVEFQQ 217 >gi|156553642|ref|XP_001600402.1| PREDICTED: similar to exosome component 1 [Nasonia vitripennis] Length = 277 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 85/250 (34%), Gaps = 26/250 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ R +S+ A+ S + K G+T ++ E P G+I Sbjct: 23 RPDGREFISFRPVSVNIGSITQADSSAVFKIGNTSVVCGIKAELASPK-AETPDCGFIIP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG---SRQIII-D 115 + P S+ G G +Q +++ R L VDL L + + + Sbjct: 82 NVDLSPLSSSKFR-----PGPPGEETQCATKLVERILVNSEAVDLKDLCIHKDKLVWVLY 136 Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQHMED---------CSNKFQLSQVLKGHVAAI 164 CD+ I DG A I A + + +K ++S L+ A+ Sbjct: 137 CDLICIDYDGSVIDACIGALVAAFKILTLPVVEYTIETGATKVDDKNRISVPLRQLPAST 196 Query: 165 SCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 + + ++ D E+ V + + V S SQ ++ A Sbjct: 197 TFAIFDNQLLITDPTEDEEKLALSTLTIVFNEK-SMCMVHKSG-GIPMSQKLLSKCVSKA 254 Query: 224 KDRIADLIKL 233 K R + KL Sbjct: 255 KSRGEQVRKL 264 >gi|242082071|ref|XP_002445804.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor] gi|241942154|gb|EES15299.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor] Length = 306 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 95/265 (35%), Gaps = 43/265 (16%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ R+ + R ++ A GS LV+ GDT +L + LE P + G + Sbjct: 39 VRIDARRLREARPTTIALGAVSSAHGSALVRLGDTAMLASVKLEVMSPP-AEHPDEGSVA 97 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD------LSALGSRQ--- 111 E+ M P + + R GRS E+ +I +AL V+ L L Sbjct: 98 VEFHMPPICSP--LVRP-------GRSAEVAPVISKALEDVLMSSGMLNLKDLCLITGKA 148 Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------------------- 148 +D + ADG AA+ A A + Sbjct: 149 SWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRLFTVGGNDGKNKFELV 208 Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208 N+ + L +++C + + D E+S I+ V+ S +V +Q Sbjct: 209 NREKRKLTLCDIPLSLTCALHKDSILADPTSEEESIIETYVTVVVDSSDRLVSLQKVG-G 267 Query: 209 ATFSQDHFFAMLNLAKDRIADLIKL 233 A S ++LAK+R L ++ Sbjct: 268 AVTSMATIKECISLAKERRQSLREI 292 >gi|329767316|ref|ZP_08258841.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans M341] gi|328836005|gb|EGF85696.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans M341] Length = 695 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR ++R ++ V GS L G T L TL +E++ + ++ Sbjct: 318 IRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL V+ I I Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHG----ALGERALAQVIPSKEDFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A I +AL +K VA I+ G++ Sbjct: 434 EILESNGSSSQATICSGSMALMAAGV-------------PIKAQVAGIAMGLVKKDEHYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L A+ +++ Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTSEG-ITALQMDIKIDGLSEQILKESLEQARVGRLQILE 539 Query: 233 LQKDVISNE 241 +IS Sbjct: 540 HMNSIISEP 548 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 27/221 (12%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 + A + +VK+GDT +LTTA ++ V + + G +P G ++RE Sbjct: 26 RQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIP---GGFLRRE- 81 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 GR G + R+I R +R + + Q+I ++ D AA+ Sbjct: 82 --GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMAAML------- 132 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT-DSG 197 + + KG +A ++ G + G +++ + VD T D+ Sbjct: 133 ------GSSLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDLKVAGTIDAI 186 Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 ++VE A S++ + + I LI Q+ ++ Sbjct: 187 NMVE----AGAKEVSEEIMLNAIMFGHEEIKRLIAFQQQIV 223 >gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] gi|82700915|ref|YP_415489.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis biovar Abortus 2308] gi|161620077|ref|YP_001593964.1| polynucleotide phosphorylase/polyadenylase [Brucella canis ATCC 23365] gi|163844182|ref|YP_001628587.1| polynucleotide phosphorylase/polyadenylase [Brucella suis ATCC 23445] gi|189025218|ref|YP_001935986.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus S19] gi|237816509|ref|ZP_04595502.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str. 2308 A] gi|254690300|ref|ZP_05153554.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 6 str. 870] gi|254694788|ref|ZP_05156616.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 3 str. Tulya] gi|254705168|ref|ZP_05166996.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 3 str. 686] gi|254707316|ref|ZP_05169144.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis M163/99/10] gi|254709144|ref|ZP_05170955.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis B2/94] gi|254718207|ref|ZP_05180018.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. 83/13] gi|254731329|ref|ZP_05189907.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 4 str. 292] gi|256030669|ref|ZP_05444283.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis M292/94/1] gi|256158670|ref|ZP_05456553.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti M490/95/1] gi|256254074|ref|ZP_05459610.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti B1/94] gi|256258553|ref|ZP_05464089.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 9 str. C68] gi|256370564|ref|YP_003108075.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM 4915] gi|260169573|ref|ZP_05756384.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. F5/99] gi|260546269|ref|ZP_05822009.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260567364|ref|ZP_05837834.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] gi|260755840|ref|ZP_05868188.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6 str. 870] gi|260759063|ref|ZP_05871411.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4 str. 292] gi|260884865|ref|ZP_05896479.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9 str. C68] gi|261215115|ref|ZP_05929396.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya] gi|261221215|ref|ZP_05935496.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94] gi|261314798|ref|ZP_05953995.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis M163/99/10] gi|261316643|ref|ZP_05955840.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis B2/94] gi|261755873|ref|ZP_05999582.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str. 686] gi|261759100|ref|ZP_06002809.1| ribosomal protein S1 [Brucella sp. F5/99] gi|265983164|ref|ZP_06095899.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13] gi|265987715|ref|ZP_06100272.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis M292/94/1] gi|265997176|ref|ZP_06109733.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1] gi|294851394|ref|ZP_06792067.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL 07-0026] gi|297247393|ref|ZP_06931111.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5 str. B3196] gi|306839947|ref|ZP_07472741.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653] gi|306842722|ref|ZP_07475365.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2] gi|75496015|sp|Q57A96|PNP_BRUAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|123727384|sp|Q2YQR3|PNP_BRUA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037301|sp|A9M9Z8|PNP_BRUC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037302|sp|B0CK15|PNP_BRUSI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702625|sp|B2S9G0|PNP_BRUA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|62197138|gb|AAX75438.1| Pnp, polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82617016|emb|CAJ12125.1| Ribosomal protein S1:3' exoribonuclease:RNA binding S1:KH domain:KH domain, type 1 [Brucella melitensis biovar Abortus 2308] gi|161336888|gb|ABX63193.1| Polyribonucleotide nucleotidyltransferase [Brucella canis ATCC 23365] gi|163674905|gb|ABY39016.1| Polyribonucleotide nucleotidyltransferase [Brucella suis ATCC 23445] gi|189020790|gb|ACD73512.1| Ribosomal protein S1 [Brucella abortus S19] gi|237788576|gb|EEP62791.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str. 2308 A] gi|256000727|gb|ACU49126.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM 4915] gi|260096376|gb|EEW80252.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260156882|gb|EEW91962.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] gi|260669381|gb|EEX56321.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4 str. 292] gi|260675948|gb|EEX62769.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6 str. 870] gi|260874393|gb|EEX81462.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9 str. C68] gi|260916722|gb|EEX83583.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260919799|gb|EEX86452.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94] gi|261295866|gb|EEX99362.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis B2/94] gi|261303824|gb|EEY07321.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis M163/99/10] gi|261739084|gb|EEY27080.1| ribosomal protein S1 [Brucella sp. F5/99] gi|261745626|gb|EEY33552.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str. 686] gi|262551644|gb|EEZ07634.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1] gi|264659912|gb|EEZ30173.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis M292/94/1] gi|264661756|gb|EEZ32017.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13] gi|294819983|gb|EFG36982.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL 07-0026] gi|297174562|gb|EFH33909.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5 str. B3196] gi|306287168|gb|EFM58670.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2] gi|306404911|gb|EFM61196.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653] Length = 714 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I + GS L G+T + ATL + + G Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + I + Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A + G +AL D + VA I+ G++ G Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L AK ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538 Query: 234 QKDVISN 240 IS+ Sbjct: 539 MAKAISS 545 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q++I V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G ++ G + G +++ + E Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232 +D T ++ E Q E F A++ LA+ + Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232 Query: 233 LQKDVISN 240 Q + +S Sbjct: 233 FQPEDLSE 240 >gi|113475234|ref|YP_721295.1| polynucleotide phosphorylase/polyadenylase [Trichodesmium erythraeum IMS101] gi|122965040|sp|Q115K2|PNP_TRIEI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|110166282|gb|ABG50822.1| Polyribonucleotide nucleotidyltransferase [Trichodesmium erythraeum IMS101] Length = 717 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 20/230 (8%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54 +R+ GR+ +++R +S V GS L G T +++ TL + Sbjct: 322 IRVDGRKLDEVRPVSCRVGVLPSRVHGSSLFNRGLTQVMSAVTLGTPGDAQELADDLHPQ 381 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y P S G + G R + RAL V+ S + I + Sbjct: 382 DEKRYLHHYNFPPFSVGETK----PLRQPGRREIGHGALAERALIPVIPKSDIFPYVIRV 437 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 +V+ ++G T ++ + + L D + + + + + + Sbjct: 438 VSEVLSSNGSTSMGSVCASTLGLMDAGVPIVKPVSGAAMGLIKEDEEV---------RIL 488 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 D+ ED D+D TDSG I +Q + + ++ AK Sbjct: 489 TDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLPIEVIADAIHQAK 537 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 R+I L + A G+ +++ GDT +L TAT E + + G +P Sbjct: 13 RDIRLKVGLFAPQAGGAVMIESGDTAVLVTATTAKGREGIDFLPLLVDYEERLYAGGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR + R+I R LR + QI+ + + Sbjct: 73 ---GGFLRRE---GRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEEVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TG+ VA+ G +AA+ G++ I++ Y E D+ Sbjct: 127 LAVTGSSVAVLLA-------------KLPFYGPMAAVRVGLVGDDFIINPTYREVKNGDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + G ++ V+ A + + ++ + + DLI+ Q+++I+ Sbjct: 174 DLVVAGSPQG-VIMVEAGANQ--LPEQDIIEAIDFGYEAVCDLIQAQREIIAE 223 >gi|306843586|ref|ZP_07476187.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1] gi|306276277|gb|EFM57977.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1] Length = 714 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I + GS L G+T + ATL + + G Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + I + Sbjct: 377 TFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A + G +AL D + VA I+ G++ G Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L AK ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538 Query: 234 QKDVISN 240 IS+ Sbjct: 539 MAKAISS 545 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q++I V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G ++ G + G +++ + E Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232 +D T ++ E Q E F A++ LA+ + Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232 Query: 233 LQKDVISN 240 Q + +S Sbjct: 233 FQPEDLSE 240 >gi|209525615|ref|ZP_03274153.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima CS-328] gi|209493948|gb|EDZ94265.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima CS-328] Length = 720 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 19/246 (7%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55 +R+ GR +Q+R +S + K GS L G T +L+ ATL + Sbjct: 323 VRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLSIATLGTPGDAQDLDDLHPQD 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G + R+ G + RAL V+ I I Sbjct: 383 EKRYMHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPSKEQFPYVIRIV 438 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 +V+ ++G T ++ G+ +AL D + + + + +G + Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMDAGVPIVKPVSGAAMGLIKEGSEV---------RILT 489 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D TDSG I +Q + S D + AK +++ Sbjct: 490 DIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLDVVADAIAKAKPARLHILEKML 548 Query: 236 DVISNE 241 +V+ Sbjct: 549 EVLPKH 554 Score = 86.3 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R+I L + A G+ LV+ GDT +L TAT E P + +Y + Sbjct: 13 RDIRLKIGLLAPQAGGALLVESGDTSVLVTATRAEGRP----GIDFLPLLVDYEERLYAG 68 Query: 71 ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G ++RE GR R R+I R LR ++ QI+ + Sbjct: 69 GRIPGGFLRRE---GRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+TGA VA+ G +AA+ G++ I++ Y E D Sbjct: 126 VLAVTGASVAVLLA-------------RIPFYGPMAAVRVGLVGDDFIINPTYKEIRNGD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 +D + G +V V+ A + ++ + + DLIK Q +++ Sbjct: 173 LDLVVAGSPQG-VVMVEAGANE--LPEHDVIEAIDFGYEAVMDLIKAQTEIM 221 >gi|92115185|ref|YP_575113.1| polynucleotide phosphorylase/polyadenylase [Chromohalobacter salexigens DSM 3043] gi|122990389|sp|Q1QSZ4|PNP_CHRSD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|91798275|gb|ABE60414.1| Polyribonucleotide nucleotidyltransferase [Chromohalobacter salexigens DSM 3043] Length = 707 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R +S+ GS + G+T + ATL + ++ + + Sbjct: 316 RIDGRDHRTVRPLSIEVGTLPKTHGSAVFTRGETQAVVVATLGTLRDAQLIESLEGERKD 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R+ G R+ R +++++ I + + Sbjct: 376 RFLLHYNFPPYSVGEAGFMGGPKRREIGHG----RLARRGVQAMLPSEEDFPYTIRVVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ G+ +AL D LK VA I+ G++ Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PLKAPVAGIAMGLVKDEDGFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + +G + +Q + +++ L A + +++ Sbjct: 479 LTDILGDEDHLGDMDFKVAGSTAG-VTALQMDIKIEGINEEIMETALQQAHEARLHILEQ 537 Query: 234 QKDVISN 240 VI+ Sbjct: 538 MNTVIAQ 544 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 31/235 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ +V DT +L T + P + + + T G +P Sbjct: 15 VTLETGRIARQATGAVMVTMDDTVVLCTVVAKKDVNPAQPFFPLSVHYQEKTYAVGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + + Q++ + A Sbjct: 74 --GGFFKRE---GRPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVLSTDRNHDPDIA 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187 A+ G AL G + A G ++ E + ++ Sbjct: 129 AMLGTSAALA-------------ISGVPFNGPIGAARVGFNEDKGYFLNPTVEELESSEL 175 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA-DLIKLQKDVISNE 241 + T+ ++ +E +D + + + +Q +++E Sbjct: 176 NMVVAGTEKAVLMV---ESEAKELLEDEMLGAVLFGHQEMQAAITAIQ--ALADE 225 >gi|17988244|ref|NP_540878.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv. 1 str. 16M] gi|225853594|ref|YP_002733827.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis ATCC 23457] gi|256045772|ref|ZP_05448650.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv. 1 str. Rev.1] gi|256112492|ref|ZP_05453413.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv. 3 str. Ether] gi|256264963|ref|ZP_05467495.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv. 2 str. 63/9] gi|260563068|ref|ZP_05833554.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|265992189|ref|ZP_06104746.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|265993928|ref|ZP_06106485.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether] gi|81851039|sp|Q8YEB7|PNP_BRUME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|254782709|sp|C0RG51|PNP_BRUMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|17984011|gb|AAL53142.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|225641959|gb|ACO01873.1| Polyribonucleotide nucleotidyltransferase [Brucella melitensis ATCC 23457] gi|260153084|gb|EEW88176.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M] gi|262764909|gb|EEZ10830.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether] gi|263003255|gb|EEZ15548.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|263095446|gb|EEZ19047.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv. 2 str. 63/9] gi|326410167|gb|ADZ67232.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis M28] gi|326539885|gb|ADZ88100.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis M5-90] Length = 714 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I + GS L G+T + ATL + + G Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + I + Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A + G +AL D + VA I+ G++ G Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L AK ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538 Query: 234 QKDVISN 240 IS+ Sbjct: 539 MAKAISS 545 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q++I V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G ++ G + G +++ + E Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232 +D T ++ E Q E F A++ LA+ + Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232 Query: 233 LQKDVISN 240 Q + +S Sbjct: 233 FQPEDLSE 240 >gi|113460848|ref|YP_718915.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus 129PT] gi|170717334|ref|YP_001784444.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus 2336] gi|123031253|sp|Q0I2T0|PNP_HAES1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037307|sp|B0UTJ5|PNP_HAES2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|112822891|gb|ABI24980.1| polynucleotide phosphorylase [Haemophilus somnus 129PT] gi|168825463|gb|ACA30834.1| Polyribonucleotide nucleotidyltransferase [Haemophilus somnus 2336] Length = 713 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR + +R + + V GS + G+T L ATL + I + G T Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKTD 373 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLSEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEDNFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTSVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + QII + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQIIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTMNEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQIVIEAIKE 220 >gi|254700800|ref|ZP_05162628.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 5 str. 513] gi|261751308|ref|ZP_05995017.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str. 513] gi|261741061|gb|EEY28987.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str. 513] Length = 714 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I + GS L G+T + ATL + + G Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + I + Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A + G +AL D + VA I+ G++ G Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L AK ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538 Query: 234 QKDVISN 240 IS+ Sbjct: 539 MAKAISS 545 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 85/248 (34%), Gaps = 40/248 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q++I V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G ++ G + G +++ + E Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232 +D T ++ E Q E F A++ LA+ +L Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKELRD 232 Query: 233 LQKDVISN 240 Q + +S Sbjct: 233 FQPEDLSE 240 >gi|225677342|ref|ZP_03788315.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590610|gb|EEH11864.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 507 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 26/213 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56 +R+ GR+ +++R+I + + GS L G+T L TA T +E++ I + Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y + G + + G R ++ +A+ V+ + I + Sbjct: 370 EHFMLHYNFPSFAVGE----TSAARAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +++++DG + A + G +AL D +K VA I+ G++ Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGV-------------PIKAPVAGIAMGLIKDKDEYV 472 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205 + D+ ED D+D T G + +Q Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-VTALQMD 504 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 31/232 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R +SL +++ A GS +V +GDT +L T EE V N + I Y M Sbjct: 14 RPLSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKKEESVDFLPLNVQF--IAKSYAMGK 71 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G KRE G+ R I R+I R++R + I + C+++ D Sbjct: 72 IP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTVNPP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184 A+ GA AL +A + G I++ E Sbjct: 126 EVPALIGAVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKA 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D F+ D I+ V+ +E S+++ F + + + +IKL K+ Sbjct: 173 SSLDL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221 >gi|157828537|ref|YP_001494779.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933253|ref|YP_001650042.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii str. Iowa] gi|187611282|sp|A8GS96|PNP_RICRS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189037314|sp|B0BXR0|PNP_RICRO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157801018|gb|ABV76271.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908340|gb|ABY72636.1| polyribonucleotide nucleotidyltransferase [Rickettsia rickettsii str. Iowa] Length = 748 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I+ + A GS L G+T L + T + I ++ G Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S + +A S R+ G ++ RA+ ++ I + + Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++G + A + G+ +AL +K VA I+ G++ Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKNFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + L A+ +++ Sbjct: 479 LSDILGDEDYFGDMDFKVAGTGEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537 Query: 234 QKDVISNE 241 VIS Sbjct: 538 MNKVISKP 545 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 33/229 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75 +++ A+G+ VK G++ LL TA + K +T Y + + G K Sbjct: 23 IARQADGAVTVKMGNSVLLCTAVVANKA---KEGIGFLPLTINYREMAYAAGKIPGGFFK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133 E G+ R + R+I R +R + + + + C V+ D T AI GA Sbjct: 80 HE---GKPSDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 AL VAA G++ G +++ T +D Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVAG 181 Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 T DS +VE +E S++ + + +IK+ K+ ++ E Sbjct: 182 TSDSVMMVE----SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225 >gi|321469848|gb|EFX80827.1| hypothetical protein DAPPUDRAFT_243159 [Daphnia pulex] Length = 743 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 79/213 (37%), Gaps = 14/213 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLE-----EKVPMWIR 52 +R GR+ +R IS + K GS + + G T ++ T + E + V + + Sbjct: 327 IRCDGRKLTDIRNISCGVDLYKPLHGSAIFQRGQTQVVCTVAFDSPESALKSDPVSILMG 386 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K Y P +T R G G R + + LR VV I Sbjct: 387 GLKAKNFFLHYEFPPYATNE-TGRVGSGGSAGRRELGHGALAEKGLRPVVPSD--YPFTI 443 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A++ G +AL D + + + L V + + Sbjct: 444 RLTSEVLESNGSSSMASVCGGSLALMDAGVPILQPAAGVAVG--LVSRVNPETKQIDDYR 501 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205 + DL ED D+D T G I +Q Sbjct: 502 ILTDLLGIEDYLGDMDFKLAGTKKG-ITALQAD 533 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 26/218 (11%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 +++A+GS + FGDT +L TA + K +T +Y + G R+ + Sbjct: 33 YARFADGSAVASFGDTAVLVTAVSKAKSSPASFLP----LTVDYRQKAAAAG-RIPTNFL 87 Query: 80 SGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWV 135 G +EI RMI R+LR + Q++ C+++ DG +I A Sbjct: 88 RRELGTSEREILTSRMIDRSLRPLFPDGYFYETQVV--CNLLSVDGVNDPEVLSINAASA 145 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL G VAA+ G + +++ E + ++ T Sbjct: 146 ALA-------------ISDIPWNGPVAAVRVGFIDNEVVINPTRRELAHSQLNLVVSSTF 192 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +V ++ SAE Q F + + K Sbjct: 193 PNLVVMLEASAENVY--QQDFLKAIRTGVKECQTIAKA 228 >gi|148559480|ref|YP_001259963.1| polynucleotide phosphorylase/polyadenylase [Brucella ovis ATCC 25840] gi|187470942|sp|A5VTB6|PNP_BRUO2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|148370737|gb|ABQ60716.1| polyribonucleotide nucleotidyltransferase [Brucella ovis ATCC 25840] Length = 714 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I + GS L G+T + ATL + + G Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + I + Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A + G +AL D + VA I+ G++ G Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L AK ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538 Query: 234 QKDVISN 240 IS+ Sbjct: 539 MAKAISS 545 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 40/248 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +++ +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLTIETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q++I V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G ++ G + G +++ + E Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232 +D T ++ E Q E F A++ LA+ + Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232 Query: 233 LQKDVISN 240 Q + +S Sbjct: 233 FQPEDLSE 240 >gi|284053181|ref|ZP_06383391.1| polynucleotide phosphorylase/polyadenylase [Arthrospira platensis str. Paraca] gi|291569922|dbj|BAI92194.1| polyribonucleotide nucleotidyltransferase [Arthrospira platensis NIES-39] Length = 720 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 91/250 (36%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55 +R+ GR +Q+R +S + K GS L G T +L+ ATL + Sbjct: 323 VRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLSIATLGTPGDAQDLDDLHPQD 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G + R+ G + RAL V+ I I Sbjct: 383 EKRYMHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPSKEQFPYVIRIV 438 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ +AL D + V+ + G++ Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMDAGV-------------PITKPVSGAAMGLIKEGSEV 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D TDSG I +Q + S D + AK ++ Sbjct: 486 RILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLDVVADAIAKAKPARLHIL 544 Query: 232 KLQKDVISNE 241 + +V+ + Sbjct: 545 EKMLEVLPSP 554 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 28/232 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R+I L + A G+ LV+ GDT +L TAT E P + +Y + Sbjct: 13 RDIRLKIGLLAPQAGGALLVESGDTSVLVTATRAEGRP----GIDFLPLLVDYEERLYAG 68 Query: 71 ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G ++RE GR R R+I R LR ++ QI+ + Sbjct: 69 GRIPGGFLRRE---GRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+TGA VA+ G +AA+ G++ I++ Y E D Sbjct: 126 VLAVTGASVAVLLA-------------RIPFYGPMAAVRVGLVGDDFIINPTYKEIRNGD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 +D + G +V V+ A + ++ + + DLIK Q +++ Sbjct: 173 LDLVVAGSPQG-VVMVEAGANE--LPEHDVIEAIDFGYEAVMDLIKAQTEIM 221 >gi|15604364|ref|NP_220880.1| polynucleotide phosphorylase/polyadenylase [Rickettsia prowazekii str. Madrid E] gi|8928251|sp|Q9ZD43|PNP_RICPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|3861056|emb|CAA14956.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (pnp) [Rickettsia prowazekii] Length = 745 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 92/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R+I+ + A GS L G+T L + T + I ++ G Sbjct: 315 IRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S + +A S R+ G ++ RA+ ++ I + Sbjct: 375 ERFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVA 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 + +++G + A + G+ +AL +K VA I+ G++ Sbjct: 431 ETTESNGSSSMATVCGSSLALMHAGV-------------PIKAPVAGIAMGLVKESNKFA 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T SG I +Q + + L A+ +++ Sbjct: 478 VLSDIIGDEDYFGDMDFKVAGTSSG-ITALQMDIKISGIDFKIIQIALEQARLGRLHILE 536 Query: 233 LQKDVISNE 241 VIS Sbjct: 537 QMNKVISKP 545 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 32/235 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 + ++ +++ A + VK G++ LL T + KV + + + G +P Sbjct: 16 LEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLTINYREMAYSAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--R 126 G KRE G+ R + R+I R +R + + + + C V+ D T Sbjct: 75 --GGFFKRE---GKASDREILVSRLIDRPIRPLFHQAFMHET--HVTCSVLSYDPATPVD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA AL VAA G++ G +++ T Sbjct: 128 ILAIIGASAALS-------------ISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 +D T+ ++ V+ +E S+D + + +IKL K+ ++ E Sbjct: 175 LDLVVAGTED-SVMMVE--SEAHLLSEDKMLEAVKFGFESFQTVIKLIKE-LAKE 225 >gi|319744138|gb|EFV96511.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae ATCC 13813] Length = 713 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 321 VRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 380 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + A R+ G + RAL V+ I + Sbjct: 381 KRFMHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 437 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 483 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + L AK +++ Sbjct: 484 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 542 Query: 233 LQKDVISNE 241 + I+ Sbjct: 543 VLHGAIAEP 551 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 26/230 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68 ++ + V+K A GS +V++GD+ +LT A + +K + + G P Sbjct: 18 KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + Q+I + A Sbjct: 77 --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL G +A + + G I++ E ++ Sbjct: 132 AMFGSSLALS-------------ISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A+ S++ L + + +LI Q++++ Sbjct: 179 LTVAGTKEA-INMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 225 >gi|332365788|gb|EGJ43545.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK355] Length = 733 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKIDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+D L + + +LI Q+++++ Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222 >gi|187251573|ref|YP_001876055.1| polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum Pei191] gi|257096702|sp|B2KDX2|PNP_ELUMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|186971733|gb|ACC98718.1| Polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum Pei191] Length = 698 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 91/246 (36%), Gaps = 19/246 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR+ +++R+++ + A GS L G T L TL + + Sbjct: 318 VRVDGRKTDEIRQLNSITGLLPRAHGSALFTRGQTQGLVVTTLGTSGDAQLVESLEESYD 377 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y STG A R+ G E+ R RAL ++ + I + Sbjct: 378 ETFMLHYNFPGFSTGECKPDRAPGRREIGHG-ELAR---RALLPLIPDADKFPYTIRVVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A++ G ++L D M+ + + + +G A+ + D Sbjct: 434 DIMESNGSSSMASVCGGSLSLFDAGVPMKAACSGIAMGLIKEGDKYAV---------LSD 484 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAE-RATFSQDHFFAMLNLAKDRIADLIKLQK 235 + ED D+D + +G I Q + S + + A ++ Sbjct: 485 IMGLEDHLGDMDFKLTGSRNG-ITAFQMDVKLAGGISIEILKEAVAQATKGRMHIMDHMD 543 Query: 236 DVISNE 241 V+ Sbjct: 544 SVLPEP 549 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 89/230 (38%), Gaps = 30/230 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70 +SL K A+GS + + GDT +L TA + +KV + +T Y + Sbjct: 18 LSLETGWVAKQADGSVIARMGDTMVLATA-VSDKVQK-PGISDFVPLTVNYKERTYAAGK 75 Query: 71 --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126 G KRE+ R + R+I R+LR + + V+ ADG T Sbjct: 76 IPGGFFKRES---RASKKETLASRIIDRSLRPLFPSGYTCETNVTA--MVLSADGVYDTE 130 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ + AL S VAA+ G L G IV+ E + D Sbjct: 131 VLAVMASSTAL-------------IISSIPFTTPVAAVRIGRLNGNFIVNPTLEEQKSCD 177 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D + G ++ V+G A+ S++ L AK I L K Q + Sbjct: 178 MDLIISGSLEG-MLMVEGGAKE--VSEEDVIKALETAKPAIDILCKAQLE 224 >gi|119479959|ref|XP_001260008.1| exosome complex endonuclease 1/ribosomal RNA processing protein, putative [Neosartorya fischeri NRRL 181] gi|119408162|gb|EAW18111.1| exosome complex endonuclease 1/ribosomal RNA processing protein, putative [Neosartorya fischeri NRRL 181] Length = 269 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 8/149 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +RL GR+ N++R + + + GS + G+T ++ + + Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73 Query: 58 --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + + + +R +R S RQ R I ++ A +S + I I Sbjct: 74 GAVVEVDVNVAGFAGVDRRRRAGGSDRQSSR---IATILRSAFQSHLHTHLYPHSTISIH 130 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHM 144 V+ ADG AA+ +AL D M Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPM 159 >gi|329123749|ref|ZP_08252309.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] gi|327469948|gb|EGF15413.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius ATCC 11116] Length = 714 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 319 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 379 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAKFPYVVRVVSE 434 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 435 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEKEKFVV 481 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 482 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 540 Query: 234 QKDVI 238 + I Sbjct: 541 MEQAI 545 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 20 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 78 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 79 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 133 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 134 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 180 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +++ K+ Sbjct: 181 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKE 225 >gi|187611440|sp|Q9PGQ9|PNP_XYLFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 700 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I++ V GS L G+T + TL + + G Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVPKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 536 Query: 233 LQKDVIS 239 ++ Sbjct: 537 EMDKALA 543 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL T T E + + G +P Sbjct: 15 VTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126 G+ KRE GR + I R+I R +R + QII + DG Sbjct: 74 --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL KG + A G G I++ E Sbjct: 128 -PAMIGASAALSLAGI-------------PFKGPIGAAKIGYNDGQYILNPTVSELKKSQ 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ T + ++ +E A S++ + + +I++ Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 217 >gi|148284082|ref|YP_001248172.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi str. Boryong] gi|187610322|sp|A5CC62|PNP_ORITB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|146739521|emb|CAM79228.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi str. Boryong] Length = 740 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 27/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ R +++R I + GS L GDT L T TL +E++ + + Sbjct: 320 RIGNRAVDEIRPIICEAGLFNTVHGSALFTRGDTQSLATITLGSSTDEQIVEQLNKCERQ 379 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y LP S G A S R+ G + +A++ V+ + I I + Sbjct: 380 NFLLDYIFLPYSVGEISPLRAASRREIGHGW----LAKKAIQLVIPSKDVFPYTIRIVSE 435 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----Y 172 + Q+DG + A + A ++L + +K HVA I+ G++ G Sbjct: 436 ITQSDGSSSMATVCSASLSLMEAGV-------------PIKTHVAGIAMGLVLGEGNKFE 482 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I +Q + + + AK I ++ Sbjct: 483 ILSDISGCEDHLGDMDFKVASTKNG-ITALQLDIKVQGINLSMIESTFRQAKIGINHILN 541 Query: 233 LQKDVIS 239 + + IS Sbjct: 542 VMNNTIS 548 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 35/226 (15%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPRSTGNRVK 75 +++ A+G+ L G+T +L T ++ + + + G +P G +K Sbjct: 23 IARNADGAVLASMGNTSVLCTVVFDKNTKKDMDFFPLGVYYREMAYAAGKIP---GGFIK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGA 133 +E G+ + R+I R++R + D + QII C V+ D AI G+ Sbjct: 80 KE---GKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQII--CTVMSYDPRYSPDILAIIGS 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI--DVDANF 191 AL + + A G++ I++ D+T ++D Sbjct: 135 SAALAISGI-------------PIVKPIGAARVGIVNDEFILNP-VIHDNTGVNELDLVV 180 Query: 192 VMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T DS ++E Q ++ A + + +I ++ Sbjct: 181 AATFDSVTMIEAQA----CEIDEEKMLAAIEFGYKSLKPVINAIEE 222 >gi|148230376|ref|NP_001088781.1| hypothetical protein LOC496046 [Xenopus laevis] gi|56269196|gb|AAH87445.1| LOC496046 protein [Xenopus laevis] Length = 276 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+ +L E P G++ Sbjct: 23 RPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAEFAAPP-ADAPNKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGG-RSQEIQRMIGRALRSVVDLSAL----GSRQIIIDC 116 + P + R G + SQ + +I + ++ L G ++ C Sbjct: 82 NVDLSPLCSSQF--RPGPPGEEAQVASQFMADVIDNS--QMLLKEDLCIRHGKLAWVLYC 137 Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS----------QVLKGHVAAI 164 D+ + DG AL + + + L+ ++LK +A Sbjct: 138 DLICLDYDGNLLDTCTCALVAALQNVRLPSVKINEETGLAEVNLKTKCALKILKHPIATS 197 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + + D E+S V + + Q ++ S + ++ A Sbjct: 198 FAVFDDKFLLADPTGEEESLARGLLTVVTDEDERLCATQKPG-GSSLSAEKLQECISRAI 256 Query: 225 DRIADLIKLQKDVISN 240 R ++ L ++ +++ Sbjct: 257 TRHKEVTTLLQEALAS 272 >gi|52424548|ref|YP_087685.1| polynucleotide phosphorylase/polyadenylase [Mannheimia succiniciproducens MBEL55E] gi|81387489|sp|Q65VB0|PNP_MANSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|52306600|gb|AAU37100.1| Pnp protein [Mannheimia succiniciproducens MBEL55E] Length = 704 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 93/246 (37%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L TL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVVTLGTERDAQILDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G R+ R + +V+ + + + + Sbjct: 374 TFLFHYNFPPYSVGETGRVGSPKRREIGHG----RLAKRGVAAVMPSISEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PVKSAVAGIAMGLVKEDDKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVIS 239 + IS Sbjct: 536 MEQAIS 541 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + + ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVSVVAKKDVKEGQDFFPLTVDYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + L QII + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E +++ A + + +++ K+ ++ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFVAE 224 >gi|324989722|gb|EGC21665.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK353] Length = 733 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ S+D L + + +LI Q++++ Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIV 221 >gi|182680754|ref|YP_001828914.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M23] gi|187611441|sp|Q87EV0|PNP_XYLFT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226704834|sp|B2I730|PNP_XYLF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|182630864|gb|ACB91640.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M23] gi|307579218|gb|ADN63187.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 700 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I++ V GS L G+T + TL + + G Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVPKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 536 Query: 233 LQKDVIS 239 ++ Sbjct: 537 EMDKALA 543 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL T T E + + G +P Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126 G+ KRE GR + I R+I R +R + QII + DG Sbjct: 74 --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL KG + A G G I++ E Sbjct: 128 -PAMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQ 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ T + ++ +E A S++ + + +I++ Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 217 >gi|289449845|ref|YP_003475189.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184392|gb|ADC90817.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 745 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 86/241 (35%), Gaps = 29/241 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR +++R +S + GS L + G T +LT TL + N K Sbjct: 312 RVDGRGIDEIRPLSCDAGILPMVHGSGLFQRGQTQVLTICTLGPLSSAQTLDGLDNEKEK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y M STG + R+ G + R+L V+ I + Sbjct: 372 RYMHHYNMPGYSTGEAKPNRSPGRREIGHG----ALAERSLVPVLPSEEEFPYAIRTVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172 ++ ++G T ++ + +AL D +K VA ISCG+L Sbjct: 428 IMMSNGSTSQGSVCASTLALMDAGV-------------PIKRPVAGISCGLLVNEENDED 474 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +D+ ED D+D T G I +Q + S D L + + + Sbjct: 475 FLVFMDIQGIEDFFGDMDFKVAGTTEG-ITSIQVDIKVDGLSYDVIRQALAITRKGRLQI 533 Query: 231 I 231 I Sbjct: 534 I 534 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 86/234 (36%), Gaps = 27/234 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + A GSCL+++G+T +L+TAT + + + + G + Sbjct: 12 RDLIVETGKLAQFANGSCLIRYGNTVVLSTATASKQPRPGIDFFPLSVDYEEKMYAIGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 PR +KRE GR ++ R+I R +R + + + + Sbjct: 72 PR---GFIKRE---GRPSEKAILTSRVIDRPMRPLFPKDLRNDVAVNNLVLAVDQNASPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ G+ +A+ +G ++ + G++ G I++ + + Sbjct: 126 IAAMIGSSIAVA-------------ISDIPWRGPISGVQLGLIDGQVIINPNEEQRKQSQ 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T+ I ++ A+ +D L I + K +++ Sbjct: 173 MAVTLAGTEE-KICMIEAGADEVP--EDVMMNALLAGHQEIQKTCRFIKSIVAE 223 >gi|254444672|ref|ZP_05058148.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium DG1235] gi|198258980|gb|EDY83288.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium DG1235] Length = 745 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 89/254 (35%), Gaps = 33/254 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMWIR---NTK 55 +R GR+ N++RE+ V GS L G+T +LTT + Sbjct: 313 VRSGGRKPNELRELKSQVGVVPRVHGSALFSRGETQGLVLTTLGPANQAQSLDAITGGPT 372 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G + G G R + R+L VV + I I Sbjct: 373 TKSFMLHYNFPPFSVGETGRF----GTPGRREIGHGALAERSLLPVVPSEDVFPYSIRIS 428 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-----C 170 +++ ++G T A+I G ++L D + VA IS G++ Sbjct: 429 SEIMASNGSTSMASICGGCLSLMDAGV-------------PITDPVAGISVGLVSEFDEN 475 Query: 171 GYP-----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 G P + D+ ED D+D T +G I Q + D A + +++ Sbjct: 476 GKPAKHHILTDILGEEDHFGDMDFKIAGTKNG-ITGFQLDLKINGLPFDIVKASVAQSRE 534 Query: 226 RIADLIKLQKDVIS 239 +++ + Sbjct: 535 ARLEILANMATALE 548 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 86/231 (37%), Gaps = 31/231 (13%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 +I+ + V+ A G+ V G+T L +AT+ E + + G +P Sbjct: 13 DITFSTGDVANLASGAVTVSTGETSLFVSATVAKTVREGQDWFPLTVDYREKYTAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G KRE GR + R+ R R + L QII V+ AD Sbjct: 73 ---GGYFKRE---GRPSEKEILTSRLCDRPCRPLFPKGFLNEVQIIGF--VLSADQVNDA 124 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 + GA AL G + A+ G + G+ + + E Sbjct: 125 DILMVNGASAALA-------------ISDIPWNGPIGAVRVGQIDGHFVANPTIEEQYAS 171 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D+D +V T+ ++ ++GSA++ S++ F L A I +I K Sbjct: 172 DLDLIYVGTED-EMLMIEGSADQ--ISEERFLEALEYAHKAIQPIIAGIKQ 219 >gi|118792101|ref|XP_320154.3| AGAP012402-PA [Anopheles gambiae str. PEST] gi|116116739|gb|EAA00202.3| AGAP012402-PA [Anopheles gambiae str. PEST] Length = 274 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 23/212 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ ++R ++++ V K A+GS +VK G+T ++ E P + +HG++ Sbjct: 23 IRPDGRELEELRPLAISFDVIKSADGSAIVKVGNTTVVCGIKAELATPNALA-PRHGFLV 81 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL---GSRQII-I 114 + P S+ + G +Q + + A+ + +DL L + + + Sbjct: 82 PNVDLSPVSSPSYR-----PGPPCDEAQVYSQSVADAISNARCIDLQQLCISPGKLVWCL 136 Query: 115 DCDV--IQADGGTRTAAITGAWVALHD----CLQHMEDCSNKFQLSQVLKGHVAAI---- 164 CD+ + DG AAI A H +Q+ D + L Sbjct: 137 YCDLVCLDHDGCVLDAAIIALVAAFHTVKLPTIQYNSDTEETEADTSRLLPLTVDCVPVT 196 Query: 165 -SCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 S M+ G I D E+ ++D Sbjct: 197 TSFVMVAGRLIADPTTEEEKLASTTLTVTVSD 228 >gi|317495525|ref|ZP_07953893.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424] gi|316914339|gb|EFV35817.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424] Length = 695 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR ++R ++ V GS L G T L TL +E++ + ++ Sbjct: 318 VRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL V+ I I Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHG----ALGERALAQVIPSKEDFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A I +AL +K VA I+ G++ Sbjct: 434 EILESNGSSSQATICSGSMALMAAGV-------------PIKAQVAGIAMGLVKKDEHYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L A+ ++ Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTSEG-ITALQMDIKIEGLSEQILKESLEQARVGRLQILD 539 Query: 233 LQKDVISNE 241 ++IS Sbjct: 540 HMNNIISEP 548 Score = 85.1 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 26/230 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68 E+++ +++ A + +VK+GDT +LTTA ++ V + + G +P Sbjct: 16 ELTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G ++RE GR G + R+I R +R + + Q+I ++ D A Sbjct: 75 --GGFLRRE---GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL + KG +A ++ G + G +++ + + +D Sbjct: 130 AMLGSSLALS-------------VSNIPFKGPIAGVTVGYVDGEYVINPNVEQFEKSKID 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ AE S++ + + I LI Q+ ++ Sbjct: 177 LKVAGTKDA-INMVEAGAEE--VSEEVMLNAIMFGHEEIKRLIAFQQQIV 223 >gi|261196958|ref|XP_002624882.1| exosome complex endonuclease 1/ribosomal RNA processing protein [Ajellomyces dermatitidis SLH14081] gi|239596127|gb|EEQ78708.1| exosome complex endonuclease 1/ribosomal RNA processing protein [Ajellomyces dermatitidis SLH14081] Length = 293 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 84/261 (32%), Gaps = 22/261 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57 +RL GR+ N++R + + + GS + G+T ++ + + Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ + S +R KR A G + S ++ + A + + I + Sbjct: 74 VVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHV 133 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS----CGMLCG- 171 V+ +DG A I +AL D M + + A G + Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINES 193 Query: 172 -YPIVDLDYGEDSTID----VDANFVMTDSGHIV-----EVQGS---AERATFSQDHFFA 218 P++D+ E+ + + N T + E Q + + Sbjct: 194 LDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDEEGEENQMLSVVQMESGVHISYLET 253 Query: 219 MLNLAKDRIADLIKLQKDVIS 239 M + D + ++ V+ Sbjct: 254 MFAVGLDGCKQVREILNGVLK 274 >gi|302798082|ref|XP_002980801.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii] gi|300151340|gb|EFJ17986.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii] Length = 806 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 15/231 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55 +R GR + +R IS + + A GS + G+T L L +++ + Sbjct: 419 VRSDGRGISDVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADE 478 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +Y + P S V R G R R+I R+L + S + ++ Sbjct: 479 VKRFYVQY-VFPHSCVGEVGR---IGPASRREIGHGRLIERSLEPIFP-SKFP-YTVRVE 532 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 + +++G + A++ GA++AL D ++ + +L S G + + Sbjct: 533 STITESNGSSSMASVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGGPV---ILT 589 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 D+ ED+ D+D + G I Q + + L+ AK Sbjct: 590 DILGSEDACGDMDLKVAGSKDG-ITAFQMDLKVQGINLSILKRALSKAKTA 639 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 33/233 (14%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-------LEEKVPMWIRNTKHGWITAEY 63 R+I L + A G+ + G+T L TT + VP+++ + Y Sbjct: 77 RQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYHE------RY 130 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 R++G KRE G+ I R++ R LR ++ I + V+ DG Sbjct: 131 SAAGRTSGGFNKRE---GKPRDSEVFISRLVDRPLRPMIPKGYFHE--IQVLSWVLSFDG 185 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 + L + L + + VA + G + G +++ E + Sbjct: 186 -----------LHLPEPLAITAAGAALALSDVPVLKPVAGVRVGYINGKYVLNPTASEVT 234 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T G ++ ++G S+D + + + + K ++ Sbjct: 235 KSSLDMIVAGTSDG-LLMIEG--YCNLLSEDELVKAVETGQRAVKIICKELEE 284 >gi|322514215|ref|ZP_08067277.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae ATCC 25976] gi|322119908|gb|EFX91917.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae ATCC 25976] Length = 707 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 90/245 (36%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + K Sbjct: 314 RIDGRTVDTVRALDICTGVLARTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ + + + + Sbjct: 374 RFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGV 535 Query: 234 QKDVI 238 I Sbjct: 536 MGQAI 540 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAVGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARIGFINDQFVLNPTISEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 TD ++ +E S++ + + + +I+ K+ + Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224 >gi|146321779|ref|YP_001201490.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis 98HAH33] gi|145692585|gb|ABP93090.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Streptococcus suis 98HAH33] Length = 791 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 28/247 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + + Sbjct: 369 VRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDDEYK 428 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115 Y S G+ + G G R + RAL V+ L I + Sbjct: 429 KRFLHHYNFPQYSVGSTGR----YGAPGRREIGHGALGERALEQVLPSLEDFP-YAIRLV 483 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A+IT +AL +K VA I+ G++ Sbjct: 484 AEVLESNGSSSQASITAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNY 530 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + + L AK +++ Sbjct: 531 TVLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIDGITPQILEEALAQAKKARFEIL 589 Query: 232 KLQKDVI 238 + + I Sbjct: 590 DVIEATI 596 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68 ++ + V+K A G+ +V++GD+ +LT A + +K + + G P Sbjct: 66 KLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 124 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+I R +R + Q+I D A Sbjct: 125 --GGWMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAPMA 179 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL G +A + G + G I++ D + ++ Sbjct: 180 AMFGSSLALA-------------ISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLE 226 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 I V+ A+ S++ L I +L+ Q +++ Sbjct: 227 LTVAGNKDA-INMVESGAKE--LSEEVMLEALLKGHAAIQELLDFQNQIVA 274 >gi|288800995|ref|ZP_06406451.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 299 str. F0039] gi|288331929|gb|EFC70411.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral taxon 299 str. F0039] Length = 743 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 88/248 (35%), Gaps = 30/248 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 RL GR+ +++R I GS L G+T L+T TL K+ + + + Sbjct: 325 RLDGRKPDEIRPIWCEVSTLPMPHGSALFTRGETQSLSTCTLGSKLDEKMVDDVLDKSYQ 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + R L+ + + + Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREVGHGH----LAWRGLKGQIPADF--PYTVRLVSQ 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + ++L D M K V+ I+ G++ Sbjct: 439 ILESNGSSSMATVCAGTLSLMDAGVPM-------------KAPVSGIAMGLIKNPGEEKY 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK ++ Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTLKG-ITATQMDIKCDGLSFEILEKALMQAKAGREHIL 544 Query: 232 KLQKDVIS 239 + IS Sbjct: 545 SKMTETIS 552 Score = 99.0 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 22/233 (9%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69 R IS+ V+K A+GS ++ G+T LL T ++ VP +Y R Sbjct: 14 RFISVETGKVAKQADGSAVITMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGRF 73 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE G+ R++ RALR + + ++ + ++ ADG Sbjct: 74 PGGFTKRE---GKASDNEILTSRLVDRALRPLFPSN--YHAEVYVQVMLLSADG------ 122 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 V D L + ++ + + G +V+ + + D+D Sbjct: 123 -----VDQPDALAGFAASAALACSDIPFDFPISEVRVARINGEYVVNPTFQQMENADMDL 177 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T +I+ V+G E S+ L +A + I + LQ + +S E+ Sbjct: 178 MVGATKD-NILMVEG--EMDEVSEQELIEALKVAHEAIKPMCDLQTE-LSKEL 226 >gi|324996021|gb|EGC27932.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK678] gi|327460682|gb|EGF07017.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1] gi|327472404|gb|EGF17835.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK408] gi|327488757|gb|EGF20556.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1058] Length = 733 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 IRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T I V+ A+ S+D L + + +LI Q+++++ Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVAT 223 >gi|323350507|ref|ZP_08086169.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis VMC66] gi|322123189|gb|EFX94874.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis VMC66] Length = 733 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTILTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEISLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ S+D L + + +LI Q++++ Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIV 221 >gi|223940512|ref|ZP_03632361.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514] gi|223890836|gb|EEF57348.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514] Length = 664 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 74/228 (32%), Gaps = 14/228 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMWIR---NTKH 56 R+ GR + +R I + A GS L G+T L T E + + Sbjct: 217 RMDGRPLDGIRAIHSEAGILPRAHGSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNE 276 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + R+ G + R++ ++ L I + Sbjct: 277 KKFILHYNFPNYSVGETGRISGPGRREIGHG----ALAERSIEPMIPLDKYP-YAIRVTS 331 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 ++++++G T A++ G +AL D M + + + D Sbjct: 332 EIMESNGSTSMASVCGGTLALMDAGVPMIRPVAGISIGMCTEHDAVDKISAY---KLLSD 388 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + ED D+D T+ G I Q + D L A+ Sbjct: 389 IIGAEDGFGDMDCKIAGTEKG-ITGFQLDLKLRGIPHDMMAETLEKAR 435 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 20/139 (14%) Query: 100 SVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157 + Q+ V+ ADG +I GA +L Sbjct: 1 PLFPKGWYNEVQVQTV--VLSADGENDPDILSIIGASASL-------------MVSDIPW 45 Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217 G + A+ + G I + E + D+D +V ++ IV +G+ E S++ F Sbjct: 46 AGPLGALRIARVNGKFIAIPTHAEMAESDLDLIYVGNEND-IVMFEGAGEE--ISEEDFK 102 Query: 218 AMLNLAKDRIADLIKLQKD 236 A L +D LI QK+ Sbjct: 103 AALKFGQDCCKPLIAAQKE 121 >gi|66475762|ref|XP_627697.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa II] gi|32398930|emb|CAD98395.1| ribonuclease PH-like protein, possible [Cryptosporidium parvum] gi|46229123|gb|EAK89972.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa II] gi|323509005|dbj|BAJ77395.1| cgd6_3540 [Cryptosporidium parvum] Length = 303 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 95/265 (35%), Gaps = 39/265 (14%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58 +R RQ ++R I++ V + A+GS G+T +L + +N Sbjct: 46 IRNDDRQFEELRPITIRTGVIENADGSAYFSIGNTKVLCGIYGPN---LCKQNPIEDGLS 102 Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI-------QRMIGRALRSVVDLSALGSRQ 111 ++ EY + + + EI ++ + + SV+ Sbjct: 103 VSVEYTIGSFC----RDSALAKSKVNTENIEIKSDEKIKSILLEKVISSVICHEKYKRSS 158 Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171 I +I DG +AAI+ A ++L + + F + ++ V + S G Sbjct: 159 IDCYFYIIDDDGSAFSAAISAACLSLCNAKI---EIIGLFSATNII--AVNSNSLFNHDG 213 Query: 172 Y--------PIVDLDYGEDSTIDVDANFVMTDSG------HIVEVQGSAERATF-SQDHF 216 I+D Y E S + +N+ + G +V + SA F Sbjct: 214 KKQTEDEYSMILDPTYNEISYLGA-SNYSTLEIGLCTIRNQVVYL--SANGDFFKDPKRI 270 Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241 +LA+ + ++ KD +++E Sbjct: 271 EEGFSLAEASCSAIVDEIKDHLTSE 295 >gi|332359947|gb|EGJ37761.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1056] Length = 733 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+D L + + +LI Q+++++ Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222 >gi|319896566|ref|YP_004134759.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3031] gi|317432068|emb|CBY80418.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3031] Length = 709 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAKFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEKEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQLVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +++ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKE 220 >gi|327468357|gb|EGF13842.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK330] Length = 733 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 IRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T I V+ A+ S+D L + + +LI Q+++++ Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVAT 223 >gi|239609714|gb|EEQ86701.1| exosome complex endonuclease 1/ribosomal RNA processing protein [Ajellomyces dermatitidis ER-3] gi|327355373|gb|EGE84230.1| exosome complex endonuclease 1/ribosomal RNA processing protein [Ajellomyces dermatitidis ATCC 18188] Length = 293 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 84/261 (32%), Gaps = 22/261 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57 +RL GR+ N++R + + + GS + G+T ++ + + Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 ++ + S +R KR A G + S ++ + A + + I + Sbjct: 74 VVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHV 133 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS----CGMLCG- 171 V+ +DG A I +AL D M + + A G + Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINES 193 Query: 172 -YPIVDLDYGEDSTID----VDANFVMTDSGHIV-----EVQGS---AERATFSQDHFFA 218 P++D+ E+ + + N T + E Q + + Sbjct: 194 LDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDEEGEENQMLSVVQMESGVHISYLET 253 Query: 219 MLNLAKDRIADLIKLQKDVIS 239 M + D + ++ V+ Sbjct: 254 MFAVGLDGCKQVREILNGVLK 274 >gi|91080613|ref|XP_974147.1| PREDICTED: similar to AGAP002348-PA [Tribolium castaneum] gi|270005510|gb|EFA01958.1| hypothetical protein TcasGA2_TC007574 [Tribolium castaneum] Length = 389 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 83/231 (35%), Gaps = 31/231 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 RL GR ++ R + L GSC V G+T +L + E + P R G + Sbjct: 26 RLDGRSFDEFRPLELKFGKQW---GSCYVSLGNTKVLAQTSCEIQQPKSSR-PSEGILNI 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113 + P + +GRQ S ++ R++ + ++ VDL +L + + Sbjct: 82 NIELNPLAAP-----HFEAGRQSELSVQLNRLLEKCVKDSKAVDLESLCIKTNEKVWALK 136 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163 +D +V+ +G A +L + + + + V+ + Sbjct: 137 VDINVLNHEGNILDCASIAMLASLTHFRRPDVTCDGEEFIIHSYQQRDPIPTVIHHYPVC 196 Query: 164 ISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ--GSAERAT 210 I+ + G Y + D E+ + D + + + G AE A Sbjct: 197 ITYAIFNGGEYILADPSLLEEGSADAMLTIGLNGFKELCALHLGGKAELAP 247 >gi|325479584|gb|EGC82680.1| polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii ACS-065-V-Col13] Length = 710 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 94/250 (37%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55 +R GR ++R +S + GS L K G T +L+ TL + I R Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFKRGQTQVLSVVTLGSPADVQIIDGLNREEI 370 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +Y P G+ R+ G R+ RAL V+ + I + Sbjct: 371 TKRYMHQYNFPPFCVGDVRPLRGPGRREIGHG----RLAERALVPVLPDESEFPYTIRVV 426 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V+ ++G + A+I G+ ++L D +K VA I+ G++ Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGV-------------PIKKPVAGIAMGLIKEDDSI 473 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + + +++ L A D ++ Sbjct: 474 SILTDIQGLEDHLGDMDFKVAGTRDG-ITALQMDMKISGITREVLEKSLADAHDARMRIL 532 Query: 232 KLQKDVISNE 241 + + I + Sbjct: 533 DVIETAIKSP 542 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 74/223 (33%), Gaps = 27/223 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 + +T ++ A G C ++ GDT +L TA E + + G +P Sbjct: 14 DFEVTIGKFAEQANGECYIRSGDTSMLVTAVASEKPREGIDFFPLICDFQEKLYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE G+ + I R + R LR + + QII + D Sbjct: 74 ---GGFLRRE---GKSSDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDP 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 GA +AL G V A G + I++ + E + Sbjct: 128 LTTIGASIAL-------------GISDIPFDGPVGACMVGKVGDKLIINPNKEEREKSTL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + G I V+ A S+ + LA + I + Sbjct: 175 ELTVA-GKKGAINMVEAGANE--LSESDMLEAMLLALEEIGHI 214 >gi|145343510|ref|XP_001416364.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576589|gb|ABO94657.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 679 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 85/246 (34%), Gaps = 14/246 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMW--IRNTKH 56 +R+ GR ++R + GS L + G+T L T TL E + Sbjct: 266 VRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNTQALATVTLGSLEDSQRLDNLTGPTS 325 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 + Y S R G + + ++L V + ++ Sbjct: 326 KRLMLHYSFPSFSVNETGARGLSRREVGHGA-----LAEKSLLGVFPDEDAFPFAVRVNT 380 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175 + ++++G + AA+ +AL D + + + V+ G + Y ++ Sbjct: 381 ETLESNGSSSMAAVCSGSMALMDAGVPLTEHVGAISIGLVMD---EDEETGEVKRYALMD 437 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D+ ED D+D T SG + +Q + A D L+ A +I + + Sbjct: 438 DIMGLEDVLGDMDFKIAGTRSG-VTGIQLDCKPAGIPLDILIEALDRASAARQKVIDVME 496 Query: 236 DVISNE 241 +S Sbjct: 497 RAVSEP 502 Score = 42.4 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 29/177 (16%) Query: 72 NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAA 129 +RE G R R+I RA R + ++++++ C V+ +DG A Sbjct: 17 TFTRRE---GAPKEREILAMRVIDRATRPLF--EKNFAKEVMLQCVVMASDGVEDPAVLA 71 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID-VD 188 + GA AL S G + A+ ++ IV D ++ D Sbjct: 72 VNGASAAL-------------TASSIPWNGPIGAVRVAVVNKAIIVSPS---DEVVESSD 115 Query: 189 ANFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 + ++E Q + + L A + + +LI Q ++NE+ Sbjct: 116 FTLFYAGNEARALMIEAQSNKSGG-LEETLVADALRKAHEAVRELIPPQ-IALANEI 170 >gi|71898659|ref|ZP_00680829.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Ann-1] gi|71731606|gb|EAO33667.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Ann-1] Length = 700 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I++ V GS L G+T + TL + + G Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVPKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 536 Query: 233 LQKDVIS 239 ++ Sbjct: 537 EMDKALA 543 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL T T E + + G +P Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126 G+ KRE GR + I R+I R +R + QII + DG Sbjct: 74 --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL KG + A G G I++ E Sbjct: 128 -PAMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQ 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ T + ++ +E A S++ + + +I++ Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 217 >gi|332365583|gb|EGJ43343.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1059] Length = 733 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+D L + +LI Q+++++ Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHQAVKELIAFQEEIVA 222 >gi|119489572|ref|ZP_01622332.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106] gi|119454484|gb|EAW35632.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106] Length = 719 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55 +R+ GR +Q+R +S K GS L G T +L+ ATL + Sbjct: 323 IRVDGRNLDQVRPVSCRVGFLPKRVHGSGLFNRGLTQVLSIATLGTPGDAQDLDDLHPQD 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G + R+ G + RAL V+ + I + Sbjct: 383 EKRYMHHYNFPPYSVGETKPMRSPGRREIGHG----ALAERALLPVLPVKEQFPYVIRVV 438 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V+ ++G T ++ G+ ++L D + V+ + G++ Sbjct: 439 SEVLSSNGSTSMGSVCGSTLSLMDAGV-------------PITKPVSGAAMGLIKEGEEV 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D TDSG I +Q + S D ++ AK ++ Sbjct: 486 RILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLDVIAKAIHQAKPARLHIL 544 Query: 232 KLQKDVISNE 241 + + I Sbjct: 545 ESMLEAIQKP 554 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 29/236 (12%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R+I L + A G+ L++ GDT +L TAT E P + +Y + Sbjct: 13 RDIRLKIGLLAPQAGGAVLIESGDTSVLVTATRAEGRP----GIDFLPLLVDYEERLYAG 68 Query: 71 ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G ++RE GR R R+I R LR ++ QI+ + Sbjct: 69 GRIPGGFLRRE---GRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPD 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+TGA VA+ G +AA+ G+L I++ Y E D Sbjct: 126 VLAVTGASVAVVMAQI-------------PFYGPMAAVRVGLLGDDFIINPTYREVRNGD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D + G +V V+ A + + ++ + + DLIK Q++ I+ E+ Sbjct: 173 LDLVVAGSPEG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVCDLIKAQQE-IAKEL 224 >gi|256060129|ref|ZP_05450311.1| polynucleotide phosphorylase/polyadenylase [Brucella neotomae 5K33] gi|261324106|ref|ZP_05963303.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33] gi|261300086|gb|EEY03583.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33] Length = 714 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I + GS L G+T + ATL + + G Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + I + Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIYPMLPAAEQFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A + G +AL D + VA I+ G++ G Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L AK ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538 Query: 234 QKDVISN 240 IS+ Sbjct: 539 MAKAISS 545 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q++I V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G ++ G + G +++ + E Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232 +D T ++ E Q E F A++ LA+ + Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232 Query: 233 LQKDVISN 240 Q + +S Sbjct: 233 FQPEDLSE 240 >gi|118590504|ref|ZP_01547906.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM 12614] gi|118436967|gb|EAV43606.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM 12614] Length = 709 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R IS + A GS L G+T L ATL + T Sbjct: 317 RIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGTGEDEQYIDLLEGTVKS 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + + + Sbjct: 377 HFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAINPMMPPHHEFPYTVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G ++L D LK VA I+ G++ Sbjct: 433 ITESNGSSSMATVCGTSLSLMDAGV-------------PLKAPVAGIAMGLIKDGDRFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L AKD ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTQDG-ITSLQMDIKIDGITEEIMKVALGQAKDGRIHILGE 538 Query: 234 QKDVISN 240 I+ Sbjct: 539 MSKAITE 545 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 27/227 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T +L T + + + + G + Sbjct: 14 RPLVLETGKVARQADGAVMASYGETKVLATVVSAKSPKPGQDFFPLTVNYQEKAFAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R+I R +R + Q++I + Sbjct: 74 P---GGYFKRE---GRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSHDLENAPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ + AL G + G + G +++ + Sbjct: 128 ILAMVASSAAL-------------TLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPEST 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T+ ++ +E +D + +I Sbjct: 175 LDLVVAGTNDAVLMV---ESEAKELDEDIMLGAVMFGHKGFQPVIDA 218 >gi|254675240|ref|NP_001157042.1| exosome complex component RRP43 isoform 1 [Mus musculus] Length = 280 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 89/260 (34%), Gaps = 27/260 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+T ++ E P + G++ Sbjct: 23 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVF 81 Query: 62 ----EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQI 112 + P + R G + + + I ++ + V+ L G Sbjct: 82 LSVPNVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAW 137 Query: 113 IIDCDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHV 161 ++ CD+ + DG A AL + + + + K + ++ + Sbjct: 138 VLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNP 197 Query: 162 AAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 A S + IVD E+ V + G + + + + + Sbjct: 198 VATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCM 256 Query: 221 NLAKDRIADLIKLQKDVISN 240 + A R ++ KL +VI + Sbjct: 257 SRAVTRHKEVSKLLDEVIQS 276 >gi|90416139|ref|ZP_01224071.1| polyribonucleotide nucleotidyltransferase [marine gamma proteobacterium HTCC2207] gi|90331864|gb|EAS47078.1| polyribonucleotide nucleotidyltransferase [marine gamma proteobacterium HTCC2207] Length = 715 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + + GS L G+T + ATL + + G Sbjct: 314 RIDGRDTTTVRGIDVEVGILPKVHGSSLFTRGETQAIVAATLGSTRDAQMIDALEGRRDD 373 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R+ G R+ R + +V+ + + + Sbjct: 374 PFMLHYNFPPYSVGEAGRIGFTSRREVGHG----RLARRGINAVLPSPEEFPYAMRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G+ +AL D ++ + V + A+ + D+ Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDSGYAV---------LTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D T +G I +Q + +++ L A ++ V Sbjct: 481 LGDEDHLGDMDFKVAGTAAG-ITALQMDIKIEGITEEIMEIALEQAMQARLHILGEMNKV 539 Query: 238 ISN 240 IS Sbjct: 540 IST 542 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 33/237 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68 ++L +++ A G+ L DT +L T + + + G +P Sbjct: 15 VTLETGRIARQATGAVLCSIDDTSVLCTVVGAREAKPGMDFFPLGVHYIEKAYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TR 126 G KRE GR + R+I R +R + Q++ C V+ A+ Sbjct: 74 --GGFFKRE---GRPNEKETLTSRLIDRPIRPLFPNGFKNEVQVV--CTVMSAEKNIDPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185 AA+ G AL G V G +++ Y E + Sbjct: 127 IAAMIGTSAALSISGI-------------PFNGPVGGARVGYTDEQGYLLNPTYSELADS 173 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 +D T ++ +E + S+D + A + +I + + ++ EV Sbjct: 174 ALDMVVAGTKDAVLMV---ESEASELSEDIMLGGVLFAHQEMQSVITVIAE-LAAEV 226 >gi|237730084|ref|ZP_04560565.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2] gi|226908690|gb|EEH94608.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2] Length = 710 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR+++ +R + + V GS L G+T L TATL + + Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQNLDELMGERTD 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G R+ R + +V+ + + + Sbjct: 375 NFLFHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPELDKFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174 + +++G + A++ GA +AL D +K VA I+ G++ + + Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477 Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D + G I +Q + +++ LN AK ++ + Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 Query: 234 QKDVIS 239 + I+ Sbjct: 537 MEQAIN 542 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 ++L + + A + +V DT + T ++K +T Y + G Sbjct: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 + +RE GR I R+I R +R + + Q+I + Sbjct: 73 IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 130 AMIGASAALTLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 T++ ++ +E S+D + ++ I + +L K+ Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEA 226 >gi|154506293|ref|ZP_02043031.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149] gi|153793432|gb|EDN75852.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149] Length = 718 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 26/250 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59 R GR +Q+R ++ + GS + G T + T T I Sbjct: 334 RPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRIDGLDEAET 392 Query: 60 TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 + Y M + + E R G R + RAL V+ A I + Sbjct: 393 SKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEFPYAIRTVSET 451 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172 +++G T A++ + ++L +K VA IS G++ G Sbjct: 452 FESNGSTSQASVCASSMSLMTAGV-------------PIKAAVAGISAGLVTGETDDDYL 498 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI- 231 + D+ ED D+D T G I +Q + ++ + K ++ Sbjct: 499 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIAATKKARTYILD 557 Query: 232 KLQKDVISNE 241 ++ I+ Sbjct: 558 EVMNKAIAEP 567 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 76/226 (33%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + V+K A G+ L+ +GDT +L TAT + + + + ++ G + Sbjct: 34 RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVEYNERLYAVGKI 93 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G+ + R+I R +R + + + D Sbjct: 94 P---GGFNKRE---GKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 147 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +A G ++ G++ G + + + D Sbjct: 148 LTAMLGAAIA-------------TSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSD 194 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ A + + A + +I Sbjct: 195 LALTVASTKE-KVIMIEAGANEVP--EAQMIEAIFAAHELNQKVIA 237 >gi|159128917|gb|EDP54031.1| exosome complex endonuclease 1/ribosomal RNA processing protein, putative [Aspergillus fumigatus A1163] Length = 269 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 8/149 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +RL GR+ N++R + + + GS + G+T ++ + + Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73 Query: 58 --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + + + +R +R S RQ R I ++ A +S + I I Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSR---IATILRSAFQSHLHTHLYPHSTISIH 130 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHM 144 V+ ADG AA+ +AL D M Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPM 159 >gi|159490978|ref|XP_001703450.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas reinhardtii] gi|158280374|gb|EDP06132.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas reinhardtii] Length = 296 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 34/265 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N MR+ + SC V G T ++ + + P + G + Sbjct: 26 VRLDGRRPNDMRKPKFQFSLDDR---SCTVAQGSTRVMAVVSAALEAP-YPDRPSEGPLR 81 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQII- 113 P ++ G+ G + ++ R+I R LR VD AL G ++ Sbjct: 82 FNVEFSPMASPA-----FEPGKPGEDAIQVARLIERGLRQSGAVDQEALWVGAGRVRVWA 136 Query: 114 --IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----------- 160 +DC V+ G A AL + + + ++ Sbjct: 137 LRVDCHVLDHGGNLLDCCFLAALAALMAFRKPEVEVGGESGSEIIVHPPEVREPVPLTIH 196 Query: 161 --VAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216 A++ + + D + E++ VM + + V A+ S + F Sbjct: 197 HLPVAVTFALFQAGDMLVADPTWKEEAAAAGSCTVVMNPAQEVCCVHK-ADGIGLSPEQF 255 Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241 + LA + +++ K + Sbjct: 256 MRCVRLAGRQAEEVVAGLKKALEGH 280 >gi|85860514|ref|YP_462716.1| polynucleotide phosphorylase/polyadenylase [Syntrophus aciditrophicus SB] gi|123752513|sp|Q2LWT4|PNP_SYNAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|85723605|gb|ABC78548.1| polyribonucleotide nucleotidyltransferase [Syntrophus aciditrophicus SB] Length = 705 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 86/233 (36%), Gaps = 26/233 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHG 57 R+ GR ++R IS + A GS L G+T L + +E+ ++ + Sbjct: 323 RIDGRSYAEIRAISAEVGILPRAHGSALFNRGETQSLAALALGTSSDEQRLDYVAGEETR 382 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G + +AL V+ I I + Sbjct: 383 SFILHYNFPPYCVGEARPLRSPGRREIGHG----NLARKALMPVIPSPEEFPYTIRIVSE 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIV- 175 ++ ++G + A + G + L D +KG VA I+ G+L G +V Sbjct: 439 ILSSNGSSSMATVCGGLLCLMD-------------GGVPVKGVVAGIAMGLLKEGEQVVI 485 Query: 176 --DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 D+ ED D+D T G I +Q + ++D L A++ Sbjct: 486 LSDILGDEDHAGDMDFKVCGTSKG-ITAMQMDIKIDGINEDILRKALAQAREG 537 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 88/248 (35%), Gaps = 39/248 (15%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66 R IS+ A+G+ +V +GDT ++ TA T E V + +T G + Sbjct: 12 RNISIKTGYVAGQADGAVMVIYGDTVVMVTAVSLKTAREGVDFLPLTVDYQEMTYAAGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R R+I R++R + Q++ + ++ + Sbjct: 72 P---GGFFKRE---GRPNEREILTSRVIDRSIRPLFPKGYCYETQLVATVLSVDSENDS- 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D + + KG + + G + G I + E D Sbjct: 125 ------------DVAALLAASAALEISDIPFKGPIVGVRVGRVDGQFICNPSKLEQEKGD 172 Query: 187 VDANFVM----------TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ-- 234 ++ V ++V ++G E ++H A ++ + + +I+LQ Sbjct: 173 LNLYLVGRKVVPGTEGRPYDVNLVMLEG--EAQQVEEEHVIAGIDFGLECMRPVIELQDQ 230 Query: 235 -KDVISNE 241 + + Sbjct: 231 LRSALGKP 238 >gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein [Aspergillus fumigatus Af293] gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein, putative [Aspergillus fumigatus Af293] Length = 269 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 8/149 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +RL GR+ N++R + + + GS + G+T ++ + + Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73 Query: 58 --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + + + +R +R S RQ R I ++ A +S + I I Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSR---IATILRSAFQSHLHTHLYPHSTISIH 130 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHM 144 V+ ADG AA+ +AL D M Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPM 159 >gi|319775898|ref|YP_004138386.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3047] gi|317450489|emb|CBY86706.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae F3047] Length = 709 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTIDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAKFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEKEKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I+ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220 >gi|254471003|ref|ZP_05084406.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp. JE062] gi|211960145|gb|EEA95342.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp. JE062] Length = 712 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R I + A GS L G+T + ATL + TK Sbjct: 315 RIDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVATLGTGEDEQFIDLLEGTKKA 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + + + Sbjct: 375 TFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAVNPMLPAHHDFPYTVRVVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A++ GA ++L D LK VA I+ G++ G Sbjct: 431 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLIKEGERFAV 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D +++G I +Q + +++ L AK ++ Sbjct: 478 LSDILGDEDHLGDMDFKVAGSENG-ITALQMDIKIDGITEEIMKVALEQAKGGRVHILGE 536 Query: 234 QKDVISN 240 I+ Sbjct: 537 MAKAITE 543 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 76/235 (32%), Gaps = 31/235 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + L V++ A+G+ + +G+T +L T + + + G + Sbjct: 14 RPLILETGKVARQADGAVIATYGETKVLATVVSAKDAKPGQDFFPLTVNYQEKAYAAGRI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE GR R+I R +R + Q+++ + Sbjct: 74 P---GGFFKRE---GRPSEHETLTSRLIDRPIRPLFVDGYKNETQVVLTVLSHDLENAPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL G + G + G +++ + + Sbjct: 128 VVAMVGASAAL-------------TISGVPFMGPIGGARVGYINGEYVLNPTVDQMEETN 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237 +D T+ ++ +E S++ + I +I+L + Sbjct: 175 LDLVVAGTNDAVLMV---ESEAQELSEEVMLGAVMFGHKGFQPVIDAIIQLAEKA 226 >gi|320333541|ref|YP_004170252.1| polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis DSM 21211] gi|319754830|gb|ADV66587.1| Polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis DSM 21211] Length = 718 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R GR +R I + GS + G+T +L T TL + + + K+ Sbjct: 317 VRADGRNSRTVRPIWIETHALPRPHGSAIFTRGETQVLGTTTLGTERDEILIDDLTDDKN 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + S R+ G + RA+R+V+ I I Sbjct: 377 DRFMLHYNFPPYSTGEVKRMSGQSRREVGHG----NLAKRAIRAVLPSFEEFPYVIRIVG 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 DV++++G + A + ++L D +K VA ++ G++ Sbjct: 433 DVLESNGSSSMATVCAGTLSLMDAGV-------------PIKAPVAGVAMGLVMEGDRYR 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + + L AK+ ++ Sbjct: 480 VLTDILGLEDALGDMDFKVCGTAEG-VTALQMDIKIQGITPAIMREALAQAKEARLHILG 538 Query: 233 LQKDVI 238 +V+ Sbjct: 539 KMAEVL 544 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 79/231 (34%), Gaps = 24/231 (10%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 RE++L G+ V++GD LL TA E V + + R Sbjct: 13 RELTLETGKLAKLVSGAVTVRYGDAVLLVTAQAREDVSPLDFLPLTVEFEERHYAVGRIP 72 Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G+ +RE GR G R+ R+ R +R + Q+II A G Sbjct: 73 GSFHRRE---GRPGERAILSARITDRQIRPLFPKGYRHETQVIITVLSADAQVGADVLGP 129 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL G A + G + G +V+ Y + +D Sbjct: 130 IGASAALS-------------LSDVPWAGPTACVRVGFVGGEYVVNPTYDQLDASSLDLV 176 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL----QKDV 237 T I+ V+ A+ ++ + A + +I L Q++V Sbjct: 177 VAGTRDA-ILMVEAGAQ--VVEEELLVGAIEFAHREMQPIIDLIEQMQREV 224 >gi|258648734|ref|ZP_05736203.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC 51259] gi|260851047|gb|EEX70916.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC 51259] Length = 768 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 RL GRQ ++R I GS + G+T L T TL ++ + + + Sbjct: 325 RLDGRQTTEIRPIWCEAGPLPMPHGSAIFTRGETQALATTTLGTRLDEKMIDDVLDKSYQ 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL++ + + I D Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKNQIPADF--PYTVRIVSD 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + ++L D M V+ I+ G++ Sbjct: 439 ILESNGSSSMATVCAGTLSLLDAGVPMNR-------------PVSGIAMGLIKNPGEEKY 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T +G + Q + S + L AK ++ Sbjct: 486 AILSDILGDEDHLGDMDFKTTGTING-LTATQMDIKCDGLSYEILEKALMQAKAGREHIL 544 Query: 232 KLQKDVISNE 241 + ++ Sbjct: 545 GKLTETLAEP 554 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%) Query: 3 LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60 GR IS+ K A+G+ +++ +T LL T ++ VP Sbjct: 11 PDGRT------ISIETGKLAKQADGAIMLRLNNTMLLATVVAAKDAVPGTDFMPLQCDYK 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE GR R++ RALR + + ++ ++ + Sbjct: 65 EKYSAAGRFPGGFTKRE---GRASDYEILTSRLVDRALRPLFPSN--YHAEVYVNITLFS 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG + D L + G ++ + + G +++ + Sbjct: 120 ADG-----------KDMPDALAGFAASAALAASDIPFDGPISEVRVARINGAYVINPTFE 168 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T+ +I+ V+G E + L A + I + +LQK+++ Sbjct: 169 QLKQADMDIMVGATEE-NIMMVEG--EMDEVPESALLEALKAAHEAIKPMCRLQKELMKE 225 >gi|218961755|ref|YP_001741530.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas acidaminovorans] gi|167730412|emb|CAO81324.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas acidaminovorans] Length = 743 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKHG 57 R+ GR + +REI+ V GS L G+T L +E+V + Sbjct: 324 RVDGRGTDDIREITCEIDVLPRVHGSALFTRGETQSLGTLTLGGGTDEQVIDGLETEYKK 383 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R + RAL++V+ I I D Sbjct: 384 SFYLHYNFPPYSVGEVGR----IGPTGRRELGHGNLAERALKAVLPDKDSFPYTIRIVAD 439 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 ++++G + A+I +AL +K VA I+ G++ G Sbjct: 440 TLESNGSSSMASICSGCLAL-------------MAGGVPIKAPVAGIAMGLIMEGEDYVV 486 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + +++ LN AK ++ + Sbjct: 487 LTDIMGLEDHLGDMDFKCAGTREG-ITAMQMDIKISGITREIMQIALNKAKSARFKILDI 545 Query: 234 QKDVISNE 241 + I+ Sbjct: 546 MAECIAEP 553 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 88/236 (37%), Gaps = 32/236 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++ + K A GS +++G+T +L TAT E + + G + Sbjct: 16 RKLIVETGKMAKQANGSVFIQYGETAVLVTATMSKEPAEDQDFFPLTVDYIEKMYAAGKI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124 P G KRE+ + + + R+I R++R + Q+ I V+ DG Sbjct: 76 P---GGFFKRES---KPSTDATLMARVIDRSIRPLFPEGF--RNQVHIVVTVLSFDGVTD 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 T + GA +AL G +A+++ G + +V+ + E Sbjct: 128 PSTMGVFGASLALS-------------ISDIPFNGPIASVTVGYIDNQFVVNPHFNE-IE 173 Query: 185 IDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 N V IV ++ +A S++ + I L LQ+D IS Sbjct: 174 TQSKLNLTVAGSESSIVMIESAASE--LSEEMMLDAVFTGHKEIQKLCALQQDFIS 227 >gi|251793162|ref|YP_003007890.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter aphrophilus NJ8700] gi|247534557|gb|ACS97803.1| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter aphrophilus NJ8700] Length = 709 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDDKFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRQG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILSV 535 Query: 234 QKDVI 238 + I Sbjct: 536 MEQAI 540 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +++ K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKE 220 >gi|256371446|ref|YP_003109270.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium ferrooxidans DSM 10331] gi|256008030|gb|ACU53597.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium ferrooxidans DSM 10331] Length = 792 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 18/230 (7%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRN--TKH 56 +R+ GR +R + + + A GS L + G+T +L T + + Sbjct: 335 VRIDGRDTTTIRPLLIEVGLIPTAHGSGLFQRGETQVLNICTLGMPRMNQQLDTLGVDEE 394 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y M P +TG R+ G + RAL V+ + + + Sbjct: 395 KRYMHHYNMPPFATGETGFMRGPKRREIGHGL----LAERALVPVLPPESEFPYALRLVS 450 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 +V+ ++G T A++ G+ ++L D + + + V + D Sbjct: 451 EVLSSNGSTSMASVCGSTLSLMDAGVPIRAAVGGIAMGLIAHDGVYTT---------LTD 501 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + ED+ D+D T + +Q + + A L A+ Sbjct: 502 ILGAEDAFGDMDFKVAGTREF-VTALQLDTKIDGIPSEVLAAALEQARQA 550 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 81/238 (34%), Gaps = 18/238 (7%) Query: 13 EISLTRRVSK-YAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 + A G+ + + G T +L TAT + E + + G +P Sbjct: 16 PLRFETGKLALQANGAVVARLGGTTVLVTATGAKHVREGIDFFPLTVDVEERMYAAGKIP 75 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 G+ +RE GR ++ R+I R LR ++ + V+ AD Sbjct: 76 ---GSFFRRE---GRATDQAILTARLIDRPLRPSFADGF--RNEVHVVATVLGADLVNPH 127 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI A AL E +++ G +L T Sbjct: 128 DVLAINAASAALMVSGLPFEGPIGAVRVALAADGSWIPFPTFQQGDASSFELVVAGRKTS 187 Query: 186 D-VDANFVMTDSGHIVEVQGSAERATF--SQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D D +M ++G G+ E ++ L AK I + I+LQ+++++ Sbjct: 188 DGTDIAIMMVEAGGTEATWGAFEANAAIPTEATVAEGLVAAKQWIRESIELQEELVAK 245 >gi|254519178|ref|ZP_05131234.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. 7_2_43FAA] gi|226912927|gb|EEH98128.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. 7_2_43FAA] Length = 704 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 16/229 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57 R R +Q+R IS + G+ L G T ++T AT + ++ I + Sbjct: 312 RPDERAFDQVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGAVGDIQIIDGIGEEESK 371 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL ++ I + + Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V+ ++G T A++ G+ +AL D ++ + + + + + D+ Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLT-------REEVLTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 ED D+D T G I +Q + S + A+ Sbjct: 481 QGIEDFFADMDFKVAGTVEG-ITSIQVDTKIKGLSFKVIEDAIMGARKA 528 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 77/215 (35%), Gaps = 26/215 (12%) Query: 28 CLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQ 83 + +GDT +LT E + + + ++ G +P G +KRE GR Sbjct: 29 AFISYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKIP---GGFIKRE---GRP 82 Query: 84 GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQH 143 + R + R LR + Q++ ++ D AI A ++L Sbjct: 83 SENAILFGRAVDRPLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAINAASLSLC----- 137 Query: 144 MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203 S VAA+ G++ G I++ E ++ T ++ ++ Sbjct: 138 --------LSSIPFTTPVAAVQVGLINGNFILNPTSKEREESELQLTVCATSE-RVMMIE 188 Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + +D A + D D+IK Q++ + Sbjct: 189 AGGQEIP--EDVMLAAIKFGFDSCQDIIKFQEEAM 221 >gi|262340893|ref|YP_003283748.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272230|gb|ACY40138.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 713 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 92/247 (37%), Gaps = 30/247 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +RL GR Q+R I GS L G+T LTT TL + + Sbjct: 324 IRLDGRTSKQIRPIWSVVDYLPGVHGSALFSRGETQSLTTVTLGSSLDANKIDNVVMENQ 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG VS R+ G + RAL++++ + I + Sbjct: 384 EKFYLHYNFPPFSTGEIRPIRGVSRREIGHG----NLAQRALKNIIPNNPY---TIRVVS 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 D+++++G + A + A +AL D +K V+ I+ G+ Sbjct: 437 DILESNGSSSMATVCAASLALMDAGIS-------------IKNPVSGIAMGLFMENEKKI 483 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT-FSQDHFFAMLNLAKDRIADLI 231 I D+ ED D+D T G I Q ++ + D +L A + ++ Sbjct: 484 IISDIIGEEDHFGDLDFKITGTQYG-ITACQMDVKKTQGLTYDLLNQILKQALEGRIFIL 542 Query: 232 KLQKDVI 238 + +V+ Sbjct: 543 RKMLEVL 549 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 33/231 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63 R I + ++K A+GS +V+ DT LL T + ++ T +T +Y Sbjct: 15 RSIIIETGELAKQADGSAIVRLDDTMLLATVVVSKET---KNETNFLPLTVDYREKYSAG 71 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 G +P G +KRE GR R++ R LR ++I I ++ D Sbjct: 72 GKIP---GGFIKRE---GRPSDEEILTMRLVDRVLRPTFP--EWFKKEIQIMISLLSYD- 122 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 L D L + + G ++ I I++ + Sbjct: 123 ----------KTVLPDGLAGLAASTALSVAGVPFNGPISEIRIIRSKRNFIINPSLDQLK 172 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+D V I+ ++G E + F + A + I I+ Q Sbjct: 173 EADIDL-IVGASMNSIIMIEG--EMKEIKESEFLNTIIHAHEEIQSQIEAQ 220 >gi|269115421|gb|ACZ26287.1| putative exosome complex exonuclease [Mayetiola destructor] Length = 273 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 84/251 (33%), Gaps = 26/251 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ + R I + + A+GS +VK G+T ++ E P + ++G++ Sbjct: 22 IRPDGREFDIFRPIRINIKSIGSADGSAIVKLGNTTVICGIKAELTAPN-VEEPQNGYLI 80 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG---SRQIII-DC 116 + P + + Q + + +I + +DL L + + I C Sbjct: 81 PNIDLTPLCSPKYRSAASTDDAQV-LTCHLNDIIRDS--KWIDLKQLCIAKEKLVWILYC 137 Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQHMED-----------CSNKFQLSQVLKGHVAA 163 D+ I DG A++ AL + + + L V+ Sbjct: 138 DITCIDYDGSILDASVVALCAALRSLMLPKVQYDIETNNYTVHQTERSPLELSENCPVST 197 Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 D D E+ + D G + V + + + F L LA Sbjct: 198 TCMVFDEKSIFADPDAEEEELANTLITIASCD-GELCLVNKAG-GQSIAGQQFDECLKLA 255 Query: 224 ---KDRIADLI 231 + I LI Sbjct: 256 LNREKSICKLI 266 >gi|304436486|ref|ZP_07396460.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370532|gb|EFM24183.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 690 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR +++R +S + GS L G T +LT A +E++ + Sbjct: 311 IRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVLTVTTLGAIGDEQIIDGLGPETT 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + R+ G + RAL ++ I + Sbjct: 371 KHYLHHYNFPGYSVGEARPMRSPGRREIGHG----ALAERALFPMIPSIEDFPYTIRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + ++ G+ ++L +K V+ ++ G++ Sbjct: 427 EILESNGSSSMGSVCGSTLSLMCAGV-------------PIKRPVSGVAMGLVRDGDDYS 473 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G + +Q + A ++D + L AK Sbjct: 474 ILTDIQGMEDALGDMDFKVAGTSKG-LTAIQMDIKIAGITRDILASALEQAKKG 526 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 26/229 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++++ K A G+ LV++GDT +L TAT E V + + G + Sbjct: 11 RKLTVEHGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDYEEKMYAAGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I R +R + QI+ ++ D Sbjct: 71 P---GGFIKRE---GRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPPE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G +A + G + G +++ E+ D Sbjct: 125 IAAMFGASCAL-------------TVSDIPFMGPIAGVRVGYINGEFVINPT--EEQRAD 169 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D N + S V + + + A++ I L++ Q+ Sbjct: 170 SDLNLTVAGSYDAVMMVEAGANELPEEIVLDAIILFGHAEIRRLVEFQQ 218 >gi|146319581|ref|YP_001199293.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis 05ZYH33] gi|253752584|ref|YP_003025725.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84] gi|253754410|ref|YP_003027551.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7] gi|253756344|ref|YP_003029484.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis BM407] gi|187611303|sp|A4VXQ4|PNP_STRSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|187611308|sp|A4W401|PNP_STRS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|145690387|gb|ABP90893.1| Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Streptococcus suis 05ZYH33] gi|251816873|emb|CAZ52520.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84] gi|251818808|emb|CAZ56648.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis BM407] gi|251820656|emb|CAR47416.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7] gi|292559196|gb|ADE32197.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis GZ1] gi|319758995|gb|ADV70937.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis JS14] Length = 739 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 28/247 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + + Sbjct: 317 VRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDDEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115 Y S G+ + G G R + RAL V+ L I + Sbjct: 377 KRFLHHYNFPQYSVGSTGR----YGAPGRREIGHGALGERALEQVLPSLEDFP-YAIRLV 431 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A+IT +AL +K VA I+ G++ Sbjct: 432 AEVLESNGSSSQASITAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNY 478 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + + L AK +++ Sbjct: 479 TVLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIDGITPQILEEALAQAKKARFEIL 537 Query: 232 KLQKDVI 238 + + I Sbjct: 538 DVIEATI 544 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68 ++ + V+K A G+ +V++GD+ +LT A + +K + + G P Sbjct: 14 KLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+I R +R + Q+I D A Sbjct: 73 --GGWMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAPMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL G +A + G + G I++ D + ++ Sbjct: 128 AMFGSSLALA-------------ISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLE 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 I V+ A+ S++ L I +L+ Q +++ Sbjct: 175 LTVAGNKDA-INMVESGAKE--LSEEVMLEALLKGHAAIQELLDFQNQIVA 222 >gi|81301249|ref|YP_401457.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus PCC 7942] gi|123556249|sp|Q31KE9|PNP_SYNE7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|81170130|gb|ABB58470.1| Polyribonucleotide nucleotidyltransferase [Synechococcus elongatus PCC 7942] Length = 716 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 29/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54 +R+ GR+ +Q+R IS + GS L + G T +L+ ATL + T Sbjct: 322 VRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIATLGTPGDAQELDDLHPDT 381 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + ++ Y M P S G + R+ G + RAL V+ I + Sbjct: 382 QKRYLH-HYNMPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPSKEEFPYVIRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ +AL D +K V+ + G++ Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PIKKPVSGAAMGLIREGDE 483 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D TD G I +Q + + +N AK + Sbjct: 484 YRVLTDIQGIEDFLGDMDFKVAGTDQG-ITALQMDMKIHGLPLEIIADAINQAKPARLHI 542 Query: 231 IKLQKDVISNE 241 + + I+ Sbjct: 543 LNKMLEAIATP 553 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R+I L + A GS L+ GDT +L A T E + + G +P Sbjct: 13 RDIRLELGLFAPQAGGSVLISSGDTAVLVAATRSTAREGIDFLPLTVDYEERMYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR R+ R+I R LR + Q++ + Sbjct: 73 ---GGFLRRE---GRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA +A G +AA+ G++ I++ Y E D+ Sbjct: 127 LAVTGASIATLVA-------------KIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T +G ++ V+ A + + ++ + + +LIK Q+ +++ Sbjct: 174 DLVVAGTPAG-VIMVEAGANQ--LPEADVIEAIDFGYEAVQELIKAQQSLLAE 223 >gi|315634794|ref|ZP_07890076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476346|gb|EFU67096.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis ATCC 33393] Length = 742 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R + + V GS + G+T L ATL + + + Sbjct: 347 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 406 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 407 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 462 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 463 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDDKFVV 509 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 510 LSDILGDEDHLGDMDFKVAGTRQG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGV 568 Query: 234 QKDVI 238 + I Sbjct: 569 MEQAI 573 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 27/230 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + ++E + + T G +P Sbjct: 48 VTLETGAIARQATAAVMASMDDTTVFVAVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 106 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q++ + Sbjct: 107 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 161 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 162 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLD 208 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 TD ++ +E +++ A + + +I+ K+++ Sbjct: 209 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVYGHQQQQVVIEAIKELV 255 >gi|225018458|ref|ZP_03707650.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum DSM 5476] gi|224948767|gb|EEG29976.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum DSM 5476] Length = 722 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 78/228 (34%), Gaps = 26/228 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI- 59 R+ GR +++R ++ + GS L G T +L+ AT + Sbjct: 334 RVDGRGMDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLSIATLGPVSDEQRLDGIDENTFK 393 Query: 60 --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL V+ I + + Sbjct: 394 RYMHNYNFPSYSVGETKPSRGPGRREIGHG----ALAERALVPVLPSEEEFPYAIRVVSE 449 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V+ ++G T +I G+ +AL D +K VA ISCG++ Sbjct: 450 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKAPVAGISCGLITEGDRFMT 496 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 +VD+ ED D+D T G I +Q + + + Sbjct: 497 MVDIQGLEDFFGDMDFKVGGTHKG-ITAIQVDIKIDGLTPEIIAEAFE 543 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 30/224 (13%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 RE+ + + A GSC V++G+T ++ T E V + + + G + Sbjct: 34 RELIVETGKTSELANGSCWVRYGETVVMANVTMSAKPREGVDFFPLSVDYEEKLYAVGKI 93 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G+ +KRE+ R R+ R+I R +R + ++ D Sbjct: 94 P---GSFLKRES---RPSERAILTSRVIDRPIRPLFPKDMRNDVSVVATVLATDVDNSPE 147 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+T +A+ G VA++S G++ G +++ + E + D Sbjct: 148 VVAMTAVAIAIS-------------ISDIPWNGPVASVSVGLVDGKFVLNPNIEERAKSD 194 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 +D + IV ++ A ML+ +L Sbjct: 195 LDLTVASSGE-KIVMIEAGANEV-----DDKTMLDAIMTGHEEL 232 >gi|78358207|ref|YP_389656.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123754803|sp|Q30WI5|PNP_DESDG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|78220612|gb|ABB39961.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 750 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 27/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R+ GR +R I + A GS + G+T L TL ++ G +T Sbjct: 321 LRIDGRDTKTVRPIIIEAGALPRAHGSAIFSRGETKSLVVTTLGSTTDEQRMDSLTGDVT 380 Query: 61 ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G E R R + RALR V+ + + Sbjct: 381 KRFMLHYNFPPYSVG-----EVKPVRVSRREIGHGALAERALRPVLPSPDSFPFTLRVVS 435 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 + ++++G + AA+ G ++L D +K VA I+ G++ Sbjct: 436 ETMESNGSSSMAAVCGGSLSLMDAGV-------------PVKAPVAGIAMGLIKEDDQFI 482 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + VQ + + L A++ ++ Sbjct: 483 VLTDILGDEDALGDMDFKIAGTAEG-VTAVQMDIKIDGLPAEVMGRALAQAREARLHILN 541 Query: 233 LQKDVISNE 241 V+ Sbjct: 542 EMAKVLPEP 550 Score = 92.8 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 27/229 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68 EI + ++ A+G+ ++ G T +L T LE ++ + + G +P Sbjct: 18 EIIMETGRLANQADGAVWIQCGGTVVLCTVCTQPLEREISFFPLVVDYTEKMYAAGRIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G+ +RE GR R + R+I R LR + QI+ + + + Sbjct: 77 --GSFFRREI--GRPSERETLVSRLIDRPLRPLFPKGFTNEVQILANVISADQENDSDVL 132 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ A+ S + VA + G +++ E D Sbjct: 133 ALCGSSAAV-------------MLSSVPFEAPVAGARVCRIDGEFVLNPTITE--AAKAD 177 Query: 189 AN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 N V + +V V+G E ++ L A + +I +Q+ Sbjct: 178 LNLVVAANRDALVMVEG--EADFVPEEVIAQALEWAHREVQPIIDMQEK 224 >gi|308461535|ref|XP_003093059.1| hypothetical protein CRE_13733 [Caenorhabditis remanei] gi|308251715|gb|EFO95667.1| hypothetical protein CRE_13733 [Caenorhabditis remanei] Length = 712 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 82/239 (34%), Gaps = 20/239 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--------TTATLEEKVPMWIR 52 +R GR+ R I++ + K G + + G T ++ A + V + Sbjct: 306 IRCDGRKITDFRPITIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 365 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 + + Y + + + R+ G + +AL+++ Sbjct: 366 SQRKKSFMLHYEFPSFAINEVGISRSSNRREIGHG----ALAEKALKNLFP-KDFPYAT- 419 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + C V++++G + A++ G +AL D M+ + + + + Sbjct: 420 RLACQVLESNGSSSMASVCGGSLALFDAGVPMKSAAAGVAIGLITDQNEPDSKY-----K 474 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T +G Q + ++ L A+ I ++ Sbjct: 475 VLTDILGIEDYAGDMDFKIAGTKNG-FTAAQLDVKNDGLTRQQLKESLQAARSGIDHVL 532 >gi|189184267|ref|YP_001938052.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi str. Ikeda] gi|226702671|sp|B3CTX1|PNP_ORITI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|189181038|dbj|BAG40818.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi str. Ikeda] Length = 736 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 27/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ R +++R I + GS L GDT L T TL +E++ + + Sbjct: 316 RIGNRAIDEIRPIICEAGLFNTVHGSALFTRGDTQSLATITLGSSTDEQIVEQLNKCERQ 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 +Y LP S G A S R+ G + +A++ V+ + I I + Sbjct: 376 NFLLDYIFLPYSVGEISPLRAASRREIGHGW----LAKKAIQLVIPSKDVFPYTIRIVSE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----Y 172 + Q+DG + A + A ++L + +K HVA I+ G++ G Sbjct: 432 ITQSDGSSSMATVCSASLSLMEAGV-------------PIKTHVAGIAMGLVLGEGNKFE 478 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T +G I +Q + + + AK I ++ Sbjct: 479 ILSDISGCEDHLGDMDFKVASTKNG-ITALQLDIKVQGINLSMIESTFRQAKIGINHILN 537 Query: 233 LQKDVIS 239 + + IS Sbjct: 538 VMNNTIS 544 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 35/226 (15%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++ A+G+ L G+T +L T + + + + + + G +P G +K Sbjct: 23 IARNADGAVLASMGNTSVLCTVVFDKNTKKDIDFFPLGVYYREMAYAAGKIP---GGFIK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGA 133 +E G+ + R+I R++R + D + Q+I C V+ D AI G+ Sbjct: 80 KE---GKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQVI--CTVMSYDPRYSPDILAIIGS 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI--DVDANF 191 AL + + A G++ I++ D+T ++D Sbjct: 135 SAALAISGI-------------PIVKPIGAARVGIVNDEFILNP-VIHDNTGVNELDLVV 180 Query: 192 VMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T DS ++E Q ++ A + + +I ++ Sbjct: 181 AATFDSVTMIEAQA----CEIDEEKMLAAIEFGYKSLKPVINAIEE 222 >gi|56751675|ref|YP_172376.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus PCC 6301] gi|81561823|sp|Q5N1G4|PNP_SYNP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|56686634|dbj|BAD79856.1| polyribonucleotide nucleotidyltransferase [Synechococcus elongatus PCC 6301] Length = 716 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 29/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54 +R+ GR+ +Q+R IS + GS L + G T +L+ ATL + T Sbjct: 322 VRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIATLGTPGDAQELDDLHPDT 381 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + ++ Y M P S G + R+ G + RAL V+ I + Sbjct: 382 QKRYLH-HYNMPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPSKEEFPYVIRV 436 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ +AL D +K V+ + G++ Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PIKKPVSGAAMGLIREGDE 483 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D TD G I +Q + + +N AK + Sbjct: 484 YRVLTDIQGIEDFLGDMDFKVAGTDQG-ITALQMDMKIHGLPLEIIADAINQAKPARLHI 542 Query: 231 IKLQKDVISNE 241 + + I+ Sbjct: 543 LNKMLEAIATP 553 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R+I L + A GS L+ GDT +L A T E + + G +P Sbjct: 13 RDIRLELGLFAPQAGGSVLISSGDTAVLVAATRSTAREGIDFLPLTVDYEERMYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR R+ R+I R LR + Q++ + Sbjct: 73 ---GGFLRRE---GRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A TGA +A G +AA+ G++ I++ Y E D+ Sbjct: 127 LAATGASIATLVA-------------KIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D T +G ++ V+ A + + ++ + + +LIK Q+ +++ Sbjct: 174 DLVVAGTPAG-VIMVEAGANQ--LPEADVIEAIDFGYEAVQELIKAQQSLLAE 223 >gi|322386167|ref|ZP_08059800.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus ATCC 51100] gi|321269747|gb|EFX52674.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus ATCC 51100] Length = 732 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+D L + + +LI Q+++++ Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222 >gi|58266980|ref|XP_570646.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134110456|ref|XP_776055.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258723|gb|EAL21408.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var. neoformans B-3501A] gi|57226879|gb|AAW43339.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 262 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 21/242 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59 +R R+ ++R S ++GS G T + + + + + + Sbjct: 14 LRQDARRPYELRSTSFQLSTHSSSDGSSTATQGLTTVEVSVFGPREPRNRGLASHDRAVV 73 Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + E G++P + G +R R R QEI I + V+ +I I V+ Sbjct: 74 SVEVGVVPWAAGAGARRT----RGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVL 129 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 ADGG +I +AL D + D +V++IS G+ P++DL Sbjct: 130 SADGGILPTSINATTLALIDAGIALLD-------------YVSSISIGLHLLQPLLDLSQ 176 Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 E+S + + SG I Q D F ML L + L + V+ Sbjct: 177 PEESDLPSLVIASLPSSGKITLAQM---ETRLHVDRFEEMLTLGVEACKVLKEEMDGVVK 233 Query: 240 NE 241 + Sbjct: 234 DR 235 >gi|157376516|ref|YP_001475116.1| polynucleotide phosphorylase/polyadenylase [Shewanella sediminis HAW-EB3] gi|257096709|sp|A8FYR5|PNP_SHESH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157318890|gb|ABV37988.1| Polyribonucleotide nucleotidyltransferase [Shewanella sediminis HAW-EB3] Length = 704 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+ + +R +++ V GS L G+T L T TL + ++ G T Sbjct: 317 RIDGREPDMVRGLNVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G ++ R + +V+ + + + + Sbjct: 377 RFMLHYNFPPYSVGETGFVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGINKEIMQIALQQAYGARVHILNV 538 Query: 234 QKDVISNE 241 I Sbjct: 539 MDQAIGEH 546 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 70/208 (33%), Gaps = 27/208 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + + Sbjct: 77 --GGFFKRE---GRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + G G +++ + + D+D Sbjct: 132 SMIGTSAALA-------------ISGLPFNGPLGVARVGYTDGEYVLNPNVSQLVDSDLD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216 T G ++ V+ +E A ++ Sbjct: 179 LIVAGTQ-GAVLMVE--SEAAALPEEVM 203 >gi|258404622|ref|YP_003197364.1| polynucleotide phosphorylase/polyadenylase [Desulfohalobium retbaense DSM 5692] gi|257796849|gb|ACV67786.1| polyribonucleotide nucleotidyltransferase [Desulfohalobium retbaense DSM 5692] Length = 742 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 90/245 (36%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R++++ GS + G+T +L+ ATL +E+ + + Sbjct: 322 RIDGRDLTTVRDLNIETSSLPRTHGSAIFARGETKVLSVATLGSSRDEQRIEMLDGELNK 381 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G + RAL V+ + + + Sbjct: 382 RFMLHYNFPPYCVGEVKMMRGPARREIGHG----ALAERALTPVLPTEDEFPFTMRVVSE 437 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V++++G + A + G ++L D + VA I+ G++ Sbjct: 438 VMESNGSSSMATVCGTSLSLMDAGV-------------PVSAPVAGIAMGLIKEEDEFLV 484 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q ++ A + LN A D ++ Sbjct: 485 LTDILGDEDHLGDMDFKVAGTAEG-ITAIQMDSKIAGIPPEVLKRALNQAMDARLHILDN 543 Query: 234 QKDVI 238 V+ Sbjct: 544 MNTVL 548 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 28/235 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68 +I + ++ A G+ V+ G T +L TA + + + ++ G +P Sbjct: 20 DILIETGRLANQANGAVWVQSGGTVVLVTAVTQPVTRDIDFMPLVVDYQEMSYASGRIP- 78 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 GN +RE GR R + R+I R +R + QII + Sbjct: 79 --GNYFRREI--GRPSERETLVSRLIDRPIRPLFPAGFRDEVQIIATVLSAAPEVNPDVL 134 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+TGA A+H G + I G + G +++ E D Sbjct: 135 ALTGASAAMH-------------ISDIPFDGPIGGIRVGQVDGEFVLNPSQNELENS--D 179 Query: 189 ANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 N V+ S + V+G +D + +++ L++LQ + + ++ Sbjct: 180 LNLVLAGSRDAVTMVEGGGNFVP--EDRMAEAITWGHEQVQALLQLQDE-LREKI 231 >gi|125718838|ref|YP_001035971.1| polynucleotide phosphorylase/polyadenylase [Streptococcus sanguinis SK36] gi|187611302|sp|A3CQG6|PNP_STRSV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|125498755|gb|ABN45421.1| Polyribonucleotide nucleotidyltransferase, putative [Streptococcus sanguinis SK36] Length = 733 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGKFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+D L + + +LI Q+++++ Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222 >gi|300788163|ref|YP_003768454.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis mediterranei U32] gi|299797677|gb|ADJ48052.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis mediterranei U32] Length = 753 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 93/253 (36%), Gaps = 30/253 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56 +R+ GR +R +S V A GS L + G+T +L TL E+ + H Sbjct: 345 IRMDGRGLTDIRSLSAEVAVIPRAHGSALFERGETQILGVTTLNMLRLEQQIDSLSPETH 404 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + + R+ G + RAL V+ I Sbjct: 405 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGM----LAERALVPVLPKRDEFPYAIRQVS 460 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173 + + ++G T ++ + +AL++ LK VA I+ G++ Sbjct: 461 EALGSNGSTSMGSVCASTMALYNAGV-------------PLKAPVAGIAMGLVSDEVDGE 507 Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 + D+ ED+ D+D T I +Q + + A L AKD Sbjct: 508 TRYVALTDILGAEDALGDMDFKVAGTKDI-ITALQLDTKLDGIPSEVLAAALKQAKDARL 566 Query: 229 DLIKLQKDVISNE 241 ++++ + I + Sbjct: 567 TILEVIAEAIDSP 579 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 71/244 (29%), Gaps = 38/244 (15%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65 R + ++K A G+ + + +L +AT K P + G Sbjct: 24 RTVRFETGRLAKQAAGAVVAYLDEETMLLSATTASKHPKDHFDFFPLTVDVEERMYAAGR 83 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P + +RE GR + R+I R LR Q++I + D Sbjct: 84 IPGA---FFRRE---GRPSTDAILTCRLIDRPLRPSFTDGLRNEIQVVITVQSLNPDDPY 137 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI A + G V + ++ + + + Sbjct: 138 DVLAINAASASTQIAGL-------------PFSGPVGGVRVALVEDQWVAFPTWSQLEKA 184 Query: 186 DVDANF---VMTDSGHIVEVQGSAERATFS--------QDH--FFAMLNLAKDRIADLIK 232 + ++ D I+ V+ T D A L +K I L + Sbjct: 185 TFNMVVAGRIVGDDVAIMMVEAEGTEHTLDLIAAGGKAPDEAAVAAGLEASKPFIKVLCE 244 Query: 233 LQKD 236 Q+ Sbjct: 245 AQQQ 248 >gi|197301798|ref|ZP_03166868.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC 29176] gi|197299238|gb|EDY33768.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC 29176] Length = 695 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 26/250 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59 R GR +Q+R ++ + GS + G T + T T + Sbjct: 312 RPDGRAIDQIRPLAAEVDLISRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRLDGLDETET 370 Query: 60 TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 T Y M + + E R G R + RAL V+ A I + Sbjct: 371 TKRY-MHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSEAEFPYAIRTVSET 429 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172 +++G T A++ + ++L +K VA IS G++ G Sbjct: 430 FESNGSTSQASVCASSMSLMSAGV-------------PIKSAVAGISAGLVTGETDDDYL 476 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI- 231 + D+ ED D+D T G I +Q + ++ + K ++ Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMD 535 Query: 232 KLQKDVISNE 241 ++ I+ Sbjct: 536 EVMSKAIAEP 545 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 27/219 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + V+K A G+ L+ +GDT +L TAT + + + + ++ G + Sbjct: 12 RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPRDGIDFFPLSVEYNERMYSVGKI 71 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G+ + R+I R +R + + + D Sbjct: 72 P---GGFNKRE---GKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMAVDQDCSPE 125 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +A G ++ G++ G + + + D Sbjct: 126 LTAMLGAALA-------------TSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKVVSD 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + T ++ ++ A+ +D + A + Sbjct: 173 LALTVASTKE-KVIMIEAGAKEVP--EDKMIEAIFAAHE 208 >gi|166368080|ref|YP_001660353.1| polynucleotide phosphorylase/polyadenylase [Microcystis aeruginosa NIES-843] gi|189037309|sp|B0JYC3|PNP_MICAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|166090453|dbj|BAG05161.1| polyribonucleotide nucleotidyltransferase [Microcystis aeruginosa NIES-843] Length = 717 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54 +R+ GRQ +++R IS V + GS L G T +L+ ATL Sbjct: 322 VRVDGRQLDEVRPISCRVGVLPRRVHGSGLFNRGLTQVLSIATLGTPGDAQDLGDDLHPE 381 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y P S G + R+ G + RA+ V+ + + Sbjct: 382 DEKRYLHHYNFPPFSVGETRPMRSPGRREIGHG----ALAERAIVPVLPPQEEFPYVLRV 437 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKKPVSGAAMGLIKEGEE 484 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D TDSG I +Q + S + + A + Sbjct: 485 VRILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKIPGLSMEVVAKAIEQALPARKHI 543 Query: 231 IKLQKDVISNE 241 ++ + Sbjct: 544 LEKMLATLEKP 554 Score = 91.3 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 26/231 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 R+I L + A GS L++ G+T +L TAT E V + G +P Sbjct: 13 RDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAKAREGVDFLPLTVDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR ++ R+I R LR + Q++ + + Sbjct: 73 ---GGFLRRE---GRPPEKAILTGRLIDRPLRPLFPNWMRDDIQVVATTLSMDEEVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA VA+ +G +AA+ G+L I++ Y E ++ Sbjct: 127 LAVTGASVAVLLAGI-------------PFQGPMAAVRVGLLGDEFIINPTYKEIHNGEL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + G +V ++ A + + ++ + + DLI Q+++I Sbjct: 174 DLVVAGSPEG-VVMIEAGANQ--LPERDIIEAIDFGYEAVRDLITAQRELI 221 >gi|302342332|ref|YP_003806861.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii DSM 2075] gi|301638945|gb|ADK84267.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii DSM 2075] Length = 749 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 90/249 (36%), Gaps = 27/249 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+ GR ++R I V GS L G+T L ATL E+++ Sbjct: 317 RIDGRTVTEVRPIDCEVGVLPRTHGSALFTRGETQALVVATLGTAGDEQRIESVTEGDVF 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + + R+ G + RA+ ++ + Sbjct: 377 RHFLLHYNFPPYSVGEAKRLGGPNRRELGHG----ALARRAVEKILPAKEDFPYCLRCVS 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D + VA ++ G++ Sbjct: 433 EITESNGSSSMASVCGSSMALMDAGV-------------PVSEAVAGVAMGLIKEGDKMV 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D + G I VQ + + S++ L A++ ++ Sbjct: 480 VLTDIMGDEDHLGDMDFKVAGSARG-ISAVQMDIKISGISKEIMGQALKQAREGRLHILG 538 Query: 233 LQKDVISNE 241 + I N Sbjct: 539 EMQKAIDNP 547 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 26/230 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 RE + ++K A G+ V++G+T +L T + V +T +Y + + Sbjct: 12 REFVIETGKIAKQASGAVWVQYGETVVLVTVVGDTNV---REGIDFLPLTVDYQEMSYAA 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G N +RE GR + R+I R +R ++ QII + Sbjct: 69 GRIPGNFFRREI--GRPSEKETLTSRLIDRPVRPRMNKGWTFETQIIATVMSVDRVNEPD 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+TGA AL G +A + G + G +++ + D Sbjct: 127 VMAMTGASAAL-------------MVSDVPFDGPIAGVRVGRVDGQLVLNPTAEQIEKSD 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 ++ V + V+G + +D + + L+ +Q++ Sbjct: 174 LEL-LVAGSRDAVCMVEGGS--LMLGEDEILEAIWFGHAGLQPLLDIQEE 220 >gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein, putative [Aspergillus clavatus NRRL 1] gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein, putative [Aspergillus clavatus NRRL 1] Length = 269 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 8/149 (5%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57 +RL GR+ N++R +S + + GS + G+T ++ + + Sbjct: 14 LRLDGRRWNELRLLSAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73 Query: 58 --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + + + +R +R S RQ R I ++ A +S + I I Sbjct: 74 GAIVEVDVNVAGFAGVDRKRRAGGSDRQSSR---IATILRSAFQSHLHTHLYPHSTISIH 130 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHM 144 V+ +DG AA+ +AL D M Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPM 159 >gi|328944853|gb|EGG39013.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1087] Length = 733 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQIGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+D L + + +LI Q+++++ Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVA 222 >gi|325697461|gb|EGD39347.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK160] Length = 733 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+D L + + +LI Q+++++ Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVA 222 >gi|324992451|gb|EGC24372.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK405] gi|327462786|gb|EGF09108.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK1057] Length = 733 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 26/241 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 L 233 L Sbjct: 539 L 539 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 26/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSMDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 + T I V+ A+ S+D L + +LI Q++++ Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHQAVKELIAFQEEIV 221 >gi|195112939|ref|XP_002001029.1| GI10566 [Drosophila mojavensis] gi|193917623|gb|EDW16490.1| GI10566 [Drosophila mojavensis] Length = 770 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 17/249 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 R GR + +R+I+ + K GS L + G T + T +L+ +T G Sbjct: 353 RCDGRDYDSLRKINCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDTLAALDSG 412 Query: 58 WITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 + A Y P +TG + G G R + R+L + + Sbjct: 413 GLKAKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERSLLPTLPND--YPFTV 466 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A++ G +AL D + + + V K + + Sbjct: 467 RLTSEVLESNGSSSMASVCGGSLALMDAGVPITAPAAGVAIGLVTKYENND-TKHLQDYR 525 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G +Q + L A D + ++ Sbjct: 526 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 584 Query: 233 LQKDVISNE 241 + + I Sbjct: 585 IMGETIREP 593 Score = 84.0 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 32/235 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R+++++ ++A G+ + + GDT ++ TA + K + +Y + ++ Sbjct: 48 RKMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTP---GQNFMPLVVDYRLKNAAS 104 Query: 71 GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G R+ + G +EI R+I R+LR + Q++ + + A Sbjct: 105 G-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMDAVHSPDVL 163 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 AI A +AL G + A+ G+ G +++ E + +D Sbjct: 164 AINAASMALS-------------LSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLD 210 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQKD 236 T +V ++G +L K I ++ +LQK Sbjct: 211 LVVSATKQNLVVMLEGKGNVVL-----MQDLLKAIKQGTREAQFIIHEIERLQKA 260 >gi|119510054|ref|ZP_01629194.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena CCY9414] gi|119465241|gb|EAW46138.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena CCY9414] Length = 718 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 R+I L + A GS L++ GDT +L TAT E + + G +P Sbjct: 13 RDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSKGREGIDFLPLTVDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR ++ R+I R +R + QII + Sbjct: 73 ---GGIMRRE---GRPPEKTILTSRLIDRPMRPLFPTWLRDDLQIIAFTLSMDELVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA +A G +AA+ G++ I++ Y E D+ Sbjct: 127 LAVTGASIATLMAQI-------------PFNGPMAAVRVGLVGDDFIINPTYAETENGDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 D + G ++ V+ A + + ++ + + DLI+ Q+D+++ Sbjct: 174 DLIVAGSPHG-VIMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIQAQQDLLAE 223 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 20/247 (8%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54 +R+ GR+ +++R +S V K GS L G T +L+T TL ++ Sbjct: 322 VRVDGRKLDEVRPVSCQVGVLPKRVHGSGLFNRGLTQVLSTCTLGTPGDAQNLNDDLQTD 381 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y P S G R+ G + RAL V+ I + Sbjct: 382 QSKRYLHHYNFPPFSVGETKPMRFPGRREIGHG----ALAERALVPVLPSKEAFPYVIRV 437 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 +V+ ++G T ++ G+ ++L D + + + + +G + Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLSLMDAGVPILKPVSGAAMGLIKEGDEV---------RVL 488 Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 D+ ED D+D TD+G I +Q + + S D ++ AK ++ Sbjct: 489 TDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKISGLSLDVIAQAVHQAKSARLHILDKM 547 Query: 235 KDVISNE 241 I Sbjct: 548 LQTIQEP 554 >gi|183220916|ref|YP_001838912.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911012|ref|YP_001962567.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226702658|sp|B0SH22|PNP_LEPBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|226702659|sp|B0SQH8|PNP_LEPBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167775688|gb|ABZ93989.1| Polyribonucleotide nucleotidyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779338|gb|ABZ97636.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase; PNPase) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 696 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 27/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56 +R GR+ +++R+IS V GS + G T L TL + +K Sbjct: 313 IRFDGRKTDEIRQISCEIDVLPGPHGSAVFTRGQTQSLGVMTLGTTSDNQRYETLEGSKE 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + R+ G + RA++ V+ I + Sbjct: 373 KNFMLHYNFPAFSVGEVRRNSGPGRREIGHG----NLAERAIKKVLPTQTEFPYVIRLVS 428 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++++++G + A++ +AL + G V+ I+ G+ Sbjct: 429 EILESNGSSSMASVCSGTLAL-------------MAGGVPISGAVSGIAMGLFSDEKGRF 475 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + + + A+ ++ Sbjct: 476 AVLSDIAGIEDHFGDMDFKLAGTKKG-ITAFQMDLKVNGLGLEVLQKAIEQAEVGRDHIL 534 Query: 232 KLQKDVISN 240 IS+ Sbjct: 535 GEMNKAISS 543 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 28/233 (12%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71 I+L +K A GS + K G+ LL T E+ +T EY S G Sbjct: 14 ITLETGKWAKQAHGSVVYKTGNLVLLATVCAAEEP---KEGQDFFPLTCEYTEKAYSVGR 70 Query: 72 ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 KREA + + R++ R +R + Q+++ V+ AD + Sbjct: 71 FPGGYFKREA---KPAEHEVLLSRILDRPIRPMFPEGYFSEVQLLV--QVLSAD---KQV 122 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G + + S G +A G + G I++ E + D+D Sbjct: 123 SVQGHAI--------NAASAALSVSSIPFAGPIAGARIGRIGGEFILNPTNEEITKSDLD 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 T IV ++G E + S++ A L A++++ + +Q++ ++ + Sbjct: 175 LVVAGTKDA-IVMIEG--EASEISKEDMMAALRFAQEQLKFAVAMQEE-LAKK 223 >gi|325686903|gb|EGD28928.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK72] Length = 733 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPRKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+D L + + +LI Q+++++ Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222 >gi|302756855|ref|XP_002961851.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii] gi|300170510|gb|EFJ37111.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii] Length = 808 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 15/231 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55 +R GR + +R IS + + A GS + G+T L L +++ + Sbjct: 419 VRSDGRGISDVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADE 478 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +Y + P S V R G R R+I R+L + S + ++ Sbjct: 479 VKRFYVQY-VFPHSCVGEVGR---IGPASRREIGHGRLIERSLEPIFP-SKFP-YTVRVE 532 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 + +++G + A++ GA++AL D ++ + +L S G + + Sbjct: 533 STITESNGSSSMASVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGGPV---ILT 589 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 D+ ED+ D+D + G I Q + + L+ AK Sbjct: 590 DILGSEDACGDMDLKVAGSKEG-ITAFQMDLKVQGINLSILKRALSKAKTA 639 Score = 78.2 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 33/233 (14%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-------LEEKVPMWIRNTKHGWITAEY 63 R+I L + A G+ + G+T L TT + VP+++ + Y Sbjct: 77 RQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYHE------RY 130 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 R++G KRE G+ I R++ R LR ++ I + V+ DG Sbjct: 131 SAAGRTSGGFNKRE---GKPRDSEVFISRLVDRPLRPMIPKGYFHE--IQVLSWVLSYDG 185 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 L + L + + VA + G + G +++ E + Sbjct: 186 SH-----------LPEPLAITAAGAALALSDVPVLKPVAGVRVGYINGKYVLNPTASEVT 234 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D T G ++ ++G S+D + + + + K ++ Sbjct: 235 KSSLDMIMAGTSDG-LLMIEG--YCNLLSEDELVKAVETGQRAVKIICKELEE 284 >gi|195391142|ref|XP_002054222.1| GJ22920 [Drosophila virilis] gi|194152308|gb|EDW67742.1| GJ22920 [Drosophila virilis] Length = 769 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 17/249 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57 R GR + +R IS + K GS L + G T + T +L+ +T G Sbjct: 352 RCDGRDYDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDTLAALDSG 411 Query: 58 WITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 + A Y P +TG + G G R + R+L + + Sbjct: 412 GLKAKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERSLLPTLPHD--YPFTV 465 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A++ G +AL D + + + V K + + Sbjct: 466 RLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTKYENND-TKHLQDYR 524 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G +Q + L A D + ++ Sbjct: 525 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 583 Query: 233 LQKDVISNE 241 + + I Sbjct: 584 IMGESIKEP 592 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 32/235 (13%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R ++++ ++A G+ + + GDT ++ TA + K + +Y + ++ Sbjct: 47 RNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKATP---GQNFMPLVVDYRLKNAAS 103 Query: 71 GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G R+ + G +EI R+I R+LR + Q++ + + A Sbjct: 104 G-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMDAVHSPDVL 162 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 AI A +AL G + A+ G+ G +++ E + +D Sbjct: 163 AINAASMALS-------------LSDIPWNGPIGAVRVGLNDGEVLINPTRRELQSSQLD 209 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQKD 236 T +V ++G +L K I ++ +LQK Sbjct: 210 LVVSATKQNLVVMLEGKGNVVL-----MQDLLKAIKQGTREAQFIIHEIERLQKA 259 >gi|304393828|ref|ZP_07375753.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130] gi|303294027|gb|EFL88402.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130] Length = 709 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R+ GR + +R+I + GS L G+T + ATL + T Sbjct: 317 RIDGRDLDTVRQIESQVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + S R+ G ++ RA+++V+ + + Sbjct: 377 NFLLHYNFPPYSVGETGRIGFTSRREIGHG----KLAWRAVKAVLPSKEDFPYTLRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G +A D LK VA I+ G++ Sbjct: 433 ITESNGSSSMATVCGTSLAFMDAGV-------------PLKAPVAGIAMGLIKEGDDFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + ++D L AK ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTAEG-ITSLQMDIKITGITEDIMKIALEQAKGGRETILNE 538 Query: 234 QKDVISN 240 ++ Sbjct: 539 MSKALTE 545 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 82/239 (34%), Gaps = 44/239 (18%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGML 66 R ++L V++ A+GS +V +G+T ++ E+K + + G + Sbjct: 16 RPLTLEAGQVARQADGSVIVTYGETTVMCNVVSEKKPKPHLDFFPLTVNYIEKAYAAGKI 75 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KREA R + R+I R +R + Q+ C V+ D Sbjct: 76 P---GGFFKREA---RPSENETLVCRLIDRPIRPLFAEGYKNDTQVT--CTVLSHDMENN 127 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 A+ AL G +A G++ G +++ + E Sbjct: 128 PDIVAMIATSAAL-------------TISGVPFSGPIAGARVGLIDGDYVLNPNVDEMPE 174 Query: 185 IDVDANFVMTDSGHIV----------EVQGSAERATFSQDHF----FAMLNLAKDRIAD 229 D+D T ++ EV A F + F A++ LA+ + Sbjct: 175 SDLDLIVAGTTDAVLMVESEANVLSEEVMLGA--VMFGHEEFQPVIDAVIQLAEKCAKE 231 >gi|292572117|gb|ADE30032.1| Polyribonucleotide nucleotidyltransferase [Rickettsia prowazekii Rp22] Length = 745 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R+I+ + A GS L G+T L + T + I ++ G Sbjct: 315 IRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S + +A S R+ G ++ RA+ ++ I + Sbjct: 375 ERFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVA 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 + +++G + A + G+ +AL +K VA I+ G++ Sbjct: 431 ETTESNGSSSMATVCGSSLALMHAGV-------------PIKAPVAGIAMGLVKESNKFA 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + L A+ +++ Sbjct: 478 VLSDIIGDEDYFGDMDFKVAGTSQG-ITALQMDIKISGIDFKIIQIALEQARLGRLHILE 536 Query: 233 LQKDVISNE 241 VIS Sbjct: 537 QMNKVISKP 545 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 32/235 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68 + ++ +++ A + VK G++ LL T + KV + + + G +P Sbjct: 16 LEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLTINYREMAYSAGKIP- 74 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--R 126 G KRE G+ R + R+I R +R + + + + C V+ D T Sbjct: 75 --GGFFKRE---GKASDREILVSRLIDRPIRPLFHQAFMHET--HVTCSVLSYDPATPVD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI GA AL VAA G++ G +++ T Sbjct: 128 ILAIIGASAALS-------------ISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 +D T+ ++ V+ +E S+D + + +IKL K+ ++ E Sbjct: 175 LDLVVAGTED-SVMMVE--SEAHLLSEDKMLEAVKFGFESFQTVIKLIKE-LAKE 225 >gi|282889646|ref|ZP_06298186.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500473|gb|EFB42752.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 694 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 86/234 (36%), Gaps = 26/234 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH-L-LTTATLEEKVPMW--IRNTKH 56 +R GR +R I + + + A GS L G+T + + T E + + Sbjct: 315 VRSDGRTSINIRPIDIEQGILPRAHGSSLFTRGETQSVSVCTLGGESMAQRFEDLDGEGS 374 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +Y P S G + + R+ G ++ RAL++++ I ++ Sbjct: 375 RTFYLQYFFPPFSVGEVGRIGSPGRREVGHG----KLAERALQAILPPKEAFPYTIRLES 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 ++ +++G + A + G +A+ + +K VA I+ G++ Sbjct: 431 NITESNGSSSMATVCGGCLAMMEAGV-------------PVKRPVAGIAMGLILENERFI 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D G I Q + + A L AK Sbjct: 478 ILSDILGIEDALGDMDFKITGDAEG-ITAFQMDIKVEGITPSIMKAALEQAKKG 530 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 83/237 (35%), Gaps = 39/237 (16%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLL----TT----ATLEEKVPMWIRNTKHGWITAEY 63 EI +++ A G+ LV+ G+T +L A E+ +P+ + + + Sbjct: 14 EIVFETGKIARQANGAVLVRSGET-ILFNTACADYDLAPGEDFLPLRVDYQEK------F 66 Query: 64 GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123 ++ +KRE GR + + R+I R LR + + Q++ Sbjct: 67 SSAGKTVSGFIKRE---GRPSEKETLVSRLIDRPLRPMFENGYYNETQVLSYVWSYDGVN 123 Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AI GA AL L V A+ G++ G +V+ Sbjct: 124 APEPLAICGASAALV-------------ISDIPLIKPVGAVRVGLIGGKFVVNPTVEHQK 170 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA----DLIKLQKD 236 +D T+ ++ ++G +++ + + I L+ QK+ Sbjct: 171 KSKLDLILAGTEDA-VLMIEG--YCDFLTEEQILEAIEIGHQGIKAICETLLAWQKE 224 >gi|23503016|ref|NP_699143.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330] gi|81751805|sp|Q8FXS9|PNP_BRUSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|23349057|gb|AAN31058.1| polyribonucleotide nucleotidyltransferase [Brucella suis 1330] Length = 714 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR + +R I + GS L G+T + ATL + + G Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + G G R ++ RA+ ++ + I + Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173 + +++G + A + G +AL D + VA I+ G++ G Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + +++ L AK ++ Sbjct: 480 LSDILGDEDYLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538 Query: 234 QKDVISN 240 IS+ Sbjct: 539 MAKAISS 545 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q++I V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G ++ G + G +++ + E Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232 +D T ++ E Q E F A++ LA+ + Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232 Query: 233 LQKDVISN 240 Q + +S Sbjct: 233 FQPEDLSE 240 >gi|282881124|ref|ZP_06289811.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis CRIS 5C-B1] gi|281304928|gb|EFA97001.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis CRIS 5C-B1] Length = 766 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR IS+ V+K A+GS +V+ G+T LL T ++ VP Sbjct: 2 PDGRT------ISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQVDYR 55 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ RALR + + ++ + ++ Sbjct: 56 EQYSAAGRFPGGFTKRE---GKPSDNEILTSRLVDRALRPLFPSN--YHAEVYVQIMLLS 110 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V D L + + +++ + + G +V+ + Sbjct: 111 ADG-----------VDQPDALAGLAASAAMACSDIPFDFYISEVRVARINGEYVVNPTFE 159 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + + D+D T +I+ V+G E S+ L A + I + +Q++ ++ Sbjct: 160 QMKSADMDLMVGATKD-NIMMVEG--EMNEVSELDLIEALKAAHEAIKPMCTVQEE-LNK 215 Query: 241 EV 242 E+ Sbjct: 216 EL 217 Score = 98.2 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 87/250 (34%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 RL GR+ +++R I GS + G+T L+T TL K+ + + + Sbjct: 315 RLDGRKTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYQ 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + R L+ + + + Sbjct: 375 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPEDF--PYTVRLVSQ 428 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 429 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 475 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + Q + S + L AK ++ Sbjct: 476 VILSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 534 Query: 232 KLQKDVISNE 241 + + Sbjct: 535 GKMLETMPEP 544 >gi|241889884|ref|ZP_04777182.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC 10379] gi|241863506|gb|EER67890.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC 10379] Length = 695 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 86/249 (34%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R GR ++R ++ V GS L G T L TL +E++ + ++ Sbjct: 318 VRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G A R+ G + RAL V+ I I Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHG----ALGERALAQVIPSKEDFPYTIRIVS 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++++++G + A I +AL +K VA I+ G++ Sbjct: 434 EILESNGSSSQATICSGSMALMAAGV-------------PIKSQVAGIAMGLVKKDEHYT 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + S+ L A+ ++ Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTAEG-ITALQMDIKIDGLSEQILKESLEQARVGRLQILD 539 Query: 233 LQKDVISNE 241 +I+ Sbjct: 540 HMNSIIAEP 548 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 25/222 (11%) Query: 22 KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78 + A + +VK+GDT +LTTA ++ V + + G +P G ++RE Sbjct: 26 RQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIP---GGFLRRE- 81 Query: 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138 GR G + R+I R +R + + Q+I ++ D AA+ Sbjct: 82 --GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMAAML------- 132 Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198 + + KG +A ++ G + G +++ + VD T S Sbjct: 133 ------GSSLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDLKVAGT-SDA 185 Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 I V+ A+ S++ + + I LI+ Q+ +++ Sbjct: 186 INMVEAGAKE--VSEEIMLNAIMFGHEEIKRLIEFQQQIVNE 225 >gi|71276358|ref|ZP_00652635.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Dixon] gi|71162820|gb|EAO12545.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Dixon] Length = 700 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I++ V GS L G+T + TL + + G Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVQKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 536 Query: 233 LQKDVIS 239 ++ Sbjct: 537 EMDKALA 543 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL T T E + + G +P Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126 G+ KRE GR + I R+I R +R + QII + DG Sbjct: 74 --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL KG + A G G I++ E Sbjct: 128 -PAMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQ 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ T + ++ +E A S++ + + +I++ Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 217 >gi|170729437|ref|YP_001774870.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M12] gi|226704835|sp|B0U1R2|PNP_XYLFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|167964230|gb|ACA11240.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M12] Length = 700 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R I++ V GS L G+T + TL + + G Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + R+ G R+ R + +V+ I + Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVQKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 ++ +++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G + +Q + +++ L AK ++ Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 536 Query: 233 LQKDVIS 239 ++ Sbjct: 537 EMDKALA 543 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V++ A G+ +VK DT LL T T E + + G +P Sbjct: 15 VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126 G+ KRE GR + I R+I R +R + QII + DG Sbjct: 74 --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA AL KG + A G G I++ E Sbjct: 128 -PAMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQ 173 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ T + ++ +E A S++ + + +I++ Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 217 >gi|15892586|ref|NP_360300.1| polynucleotide phosphorylase/polyadenylase [Rickettsia conorii str. Malish 7] gi|81528220|sp|Q92HV7|PNP_RICCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|15619751|gb|AAL03201.1| polyribonucleotide nucleotidyltransferase [Rickettsia conorii str. Malish 7] Length = 749 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I+ + A GS L G+T L + T + I ++ G Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S + +A S R+ G ++ RA+ ++ I + + Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++G + A + G+ +AL +K VA I+ G++ Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKNFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + L A+ +++ Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537 Query: 234 QKDVISNE 241 VIS Sbjct: 538 MNKVISKP 545 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 33/229 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75 +++ A+G+ VK G++ LL TA + K +T Y + + G K Sbjct: 23 IARQADGAVTVKMGNSVLLCTAVVANKA---KEGIGFLPLTINYREMAYAAGKIPGGFFK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133 E G+ R + R+I R +R + + + + C V+ D T AI GA Sbjct: 80 HE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 AL VAA G++ G +++ T +D Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVAG 181 Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 T DS +VE +E S++ + + +IK+ K+ ++ E Sbjct: 182 TSDSVMMVE----SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225 >gi|297180954|gb|ADI17157.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [uncultured gamma proteobacterium HF0070_08D07] Length = 695 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57 R+ GR +R I + V GS L G+T L ATL + + + T Sbjct: 314 RIDGRDLKTVRAIEVEVGVLPKTHGSALFTRGETQALVVATLGTLRDAAIIDALEGTYKD 373 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G R+ G ++ R + +V+ + + + Sbjct: 374 QFMLHYNFPPYSVGETGMMGGPKRREVGHG----KLARRGVSAVLPDPDEFPYTLRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A++ G +AL D + + V +G+ A+ + D+ Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPLAAPVAGVAMGLVKEGNRYAV---------LTDI 480 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D + G + +Q + + +++ L+ A + +++ V Sbjct: 481 LGDEDHLGDMDFKVAGSSKG-VTALQMDIKISGITEEIMEVALSQAYEARLHILEQMNKV 539 Query: 238 ISN 240 IS Sbjct: 540 ISQ 542 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 27/229 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67 E+ + ++K G+ LV G T ++TT + + G +P Sbjct: 14 EVVIETNKIAKQTSGTALVSIGGTVVMTTVVGAKSARPGQDFFPLTVNYQEKAYAAGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +RE GR + R+I R +R + S + Q++ D Sbjct: 74 ---GGFFRRE---GRPSEKETLTSRLIDRPIRPLFPKSFMNEVQVVCTVLSTDKDQDPDI 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G AL +G + A G G +++ Y ++ D Sbjct: 128 AAMIGTSAALA-------------ISGLPFEGPIGAARVGYKDGAYLLNPGY--EALKDG 172 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 D N ++ + V + S E S+D + + +I K+ Sbjct: 173 DLNMMVAGTEEAVLMVES-EAKELSEDQMLGAVLYGHQEMQVVISSIKE 220 >gi|227499294|ref|ZP_03929406.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius ATCC 35098] gi|227218645|gb|EEI83879.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius ATCC 35098] Length = 712 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 91/250 (36%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55 +R GR ++R +S + GS L + G T +L+ TL + I R Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFQRGQTQVLSVVTLGSPADVQIIDGLNREEI 370 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 +Y P G+ R+ G R+ RAL V+ I + Sbjct: 371 QKRYIHQYNFPPFCVGDIRPLRGPGRREIGHG----RLAERALIPVLPDEKDFPYTIRVV 426 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 +V+ ++G + A+I G+ ++L D ++ VA I+ G++ Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGV-------------PIRKPVAGIAMGLIKEDSSI 473 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + +++ LN A ++ Sbjct: 474 SILTDIQGLEDHLGDMDFKVAGTRDG-ITALQMDMKIDGITREVLEESLNDAHSARMRIL 532 Query: 232 KLQKDVISNE 241 + + I Sbjct: 533 DVIEAAIDKP 542 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 75/223 (33%), Gaps = 27/223 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 + +T ++ G C ++ GDT LL TA E + + G +P Sbjct: 14 DFEITIGKFAEQTNGECYIRCGDTSLLVTAVASEKPREGIDFFPLICDFQEKLYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE G+ + I R + R LR + + QII + D Sbjct: 74 ---GGFLKRE---GKASDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDP 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 GA +AL G V A G + G I++ E + Sbjct: 128 LTTIGASIAL-------------GISDIPFYGPVGACMVGKVDGKLIINPSKEEREKSTL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + G I V+ A S++ + LA + I ++ Sbjct: 175 ELTVA-GKKGAINMVEAGA--CELSEEEMLEAMLLALEEIGNI 214 >gi|66529825|ref|XP_624000.1| PREDICTED: exosome complex exonuclease RRP43-like [Apis mellifera] Length = 281 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 26/238 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GRQ R IS+ +A+ S + K G+T ++ E VP + + G+I Sbjct: 22 VRPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTIVCGIKSELAVPK-AESPECGYIV 80 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIII 114 + P + G ++Q I +++ LR + +DL L G ++ Sbjct: 81 PNIELPPLCSPKFR-----PGPPSDQAQVITKLVENILRNSAAIDLKELCVYKGKLVWVL 135 Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAA 163 CD+ I DG A I L+ ++ ++ +K + Sbjct: 136 YCDLVCINYDGSIIDACIGALTATLNTLTLPEIFYNVETGHVSINSTKRIRFPIKALPVS 195 Query: 164 ISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 I+ + ++ D E+S VM + I + SQD F L Sbjct: 196 ITFAIFDNQLLIADPTDDEESLCLGKLTIVMNEE-KICCIHKPG-GIPISQDIFLKSL 251 >gi|34580431|ref|ZP_00141911.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246] gi|28261816|gb|EAA25320.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246] Length = 748 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I+ + A GS L G+T L + T + I ++ G Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S + +A S R+ G ++ RA+ ++ A I + + Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKAQFPYSIRVVAE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++G + A + G+ +AL +K VA I+ G++ Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKNFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + L A+ +++ Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-MTALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537 Query: 234 QKDVISNE 241 VIS Sbjct: 538 MNKVISKP 545 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 33/229 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75 +++ A+G+ VK G++ LL TA + K +T Y + + G K Sbjct: 23 IARQADGAVTVKMGNSVLLCTAVVANKA---KEGIGFLPLTINYREMAYAAGKIPGGFFK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133 E G+ R + R+I R +R + + + + C V+ D T AI GA Sbjct: 80 HE---GKASDREVVVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 AL VAA G++ G +++ T +D Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVAG 181 Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 T DS +VE +E S++ + + +IK+ K+ ++ E Sbjct: 182 TSDSVMMVE----SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225 >gi|212696535|ref|ZP_03304663.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM 7454] gi|212676471|gb|EEB36078.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM 7454] Length = 702 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 97/251 (38%), Gaps = 29/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK- 55 +R GR+ ++R +S + A GS L + G T +L+ T EE+V + + Sbjct: 311 IRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370 Query: 56 -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 +I +Y P G+ R+ G + RAL V+ + I + Sbjct: 371 TKRYIH-QYNFPPFCVGDIRPLRGPGRREVGHGH----LAERALIPVLPDTKDFPYTIRV 425 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172 +V+ ++G + A+I G+ ++L D +K VA I+ G++ Sbjct: 426 VSEVLSSNGSSSQASICGSTLSLMDAGV-------------PIKKPVAGIAMGLIKEEDS 472 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G I +Q + + +++ L A + + Sbjct: 473 ISILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDMKISGINKEVLQEALADAHEARLKI 531 Query: 231 IKLQKDVISNE 241 + + I Sbjct: 532 LDVITSAIDKP 542 Score = 90.5 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 27/223 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 ++S+T V++ G CL++ GDT LL TA E + + + G +P Sbjct: 14 DLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE G+ ++ I R + R LR + + Q+I + D Sbjct: 74 ---GGFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDC 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 GA +AL G VAA+S G + G IV+ + + + Sbjct: 128 MTTIGASIAL-------------GISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 D T I V+ A S+D + +A I ++ Sbjct: 175 DLTVAGTADA-INMVEAGANE--LSEDEMLEAMMVAHAEIKEI 214 >gi|229586754|ref|YP_002845255.1| polynucleotide phosphorylase/polyadenylase [Rickettsia africae ESF-5] gi|259534150|sp|C3PNK2|PNP_RICAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|228021804|gb|ACP53512.1| Polyribonucleotide nucleotidyltransferase [Rickettsia africae ESF-5] Length = 748 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I+ + A GS L G+T L + T + I ++ G Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S + +A S R+ G ++ RA+ ++ I + + Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++G + A + G+ +AL +K VA I+ G++ Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKNFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + L A+ +++ Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537 Query: 234 QKDVISNE 241 VIS Sbjct: 538 MNKVISKP 545 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 33/229 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75 +++ A+G+ VK G++ LL TA + K +T Y + + G K Sbjct: 23 IARQADGAVTVKMGNSVLLCTAVVANKA---KEGIGFLPLTINYREMAYAAGKIPGGFFK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133 E G+ R + R+I R +R + + + + C V+ D T AI GA Sbjct: 80 HE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 AL VAA G++ G +++ T +D Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVAG 181 Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 T DS +VE +E S++ + + +IK+ K+ ++ E Sbjct: 182 TSDSVMMVE----SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225 >gi|332359275|gb|EGJ37096.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK49] Length = 733 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ N++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRKVNEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 R++ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RDLVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+D L + + +LI Q+++++ Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVA 222 >gi|325849667|ref|ZP_08170870.1| polyribonucleotide nucleotidyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480008|gb|EGC83086.1| polyribonucleotide nucleotidyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 702 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 97/251 (38%), Gaps = 29/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK- 55 +R GR+ ++R +S + A GS L + G T +L+ T EE+V + + Sbjct: 311 IRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370 Query: 56 -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 +I +Y P G+ R+ G + RAL V+ + I + Sbjct: 371 TKRYIH-QYNFPPFCVGDIRPLRGPGRREVGHGH----LAERALIPVLPDTKDFPYTIRV 425 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172 +V+ ++G + A+I G+ ++L D +K VA I+ G++ Sbjct: 426 VSEVLSSNGSSSQASICGSTLSLMDAGV-------------PIKKPVAGIAMGLIKEEDS 472 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G I +Q + + +++ L A + + Sbjct: 473 ISILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDMKISGINKEVLQEALADAHEARLKI 531 Query: 231 IKLQKDVISNE 241 + + I Sbjct: 532 LDVITSAIDKP 542 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 27/223 (12%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 ++S+T V++ G CL++ GDT LL TA E + + + G +P Sbjct: 14 DLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGKIP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G +KRE G+ ++ I R + R LR + + Q+I + D Sbjct: 74 ---GGFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDC 127 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 GA +AL G VAA+S G + G IV+ + + + Sbjct: 128 MTTIGASIAL-------------GISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSL 174 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 D T I V+ A S+D + +A I ++ Sbjct: 175 DLTVAGTADA-INMVEAGANE--LSEDEMLEAMMVAHAEIKEI 214 >gi|300087646|ref|YP_003758168.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527379|gb|ADJ25847.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 733 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 94/251 (37%), Gaps = 32/251 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56 R+SGR ++RE+S V GS L G T +L TL E+K+ T Sbjct: 313 RVSGRGIEEIRELSAEVGVLPRVHGSALFSRGQTQILNVVTLGSLQMEQKLDNISPETSK 372 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 +I Y P S G KR R+ G + RAL VV A + + Sbjct: 373 RYIH-HYNFPPYSVGE-TKRIGTGRREIGHG----ALAERALLPVVPSEAEFPYALRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 + + ++G T A+ + ++L D +K VA IS G++ Sbjct: 427 EAVSSNGSTSMASACASSLSLMDAGV-------------PIKKPVAGISIGLITDDTNPD 473 Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229 + D++ ED+ D+D T G I +Q + + L A+ Sbjct: 474 RFVTLTDIEGLEDNYGDMDFKVAGTRDG-ITAIQLDMKLKGITFAVIEQTLAQARRAREV 532 Query: 230 LIKLQKDVISN 240 ++++ I+ Sbjct: 533 ILEVMNKAIAQ 543 Score = 85.1 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 23/231 (9%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68 R + + A G+ V++GDT +L TA + K P + I E M R Sbjct: 14 RNLVIENGRMAGQANGAVTVRYGDTVVLVTAVI-AKEPRPGVDFLPLTIDVEERMYAAGR 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G ++RE GR ++ R+ R LR ++ S QII+ + Sbjct: 73 IPGGFIRRE---GRPSEQATLAARLADRPLRPLLPKSWRREIQIIVTVLTADQENDPDVL 129 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 + GA AL G ++A+ G + G +++ + + +D Sbjct: 130 GVIGASCAL-------------GISEMPFDGPLSAVRVGHIDGEFVINPTHSQLENSTLD 176 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T S + ++ A A +D F + ++I +Q ++I+ Sbjct: 177 VVVASTRSA-VTMLEAGANEAP--EDLMFEAIRFGHQANQEIIAIQDEIIA 224 >gi|198274276|ref|ZP_03206808.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135] gi|198272951|gb|EDY97220.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135] Length = 727 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 87/250 (34%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 RL GR ++R I GS + G+T L+T TL K+ I + Sbjct: 319 RLDGRATTEIRPIWCETSPLPGPHGSSIFTRGETQSLSTVTLGTKMDEKIVDDVLDQHKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYCVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGV-------------PIKKPVSGIAMGLIKNAGEDKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + + D L AK ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKCDGLTYDILEKALMQAKQGREYIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 GKLTECIAEP 548 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 21/231 (9%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69 R I+L K A+G+ +++ G+T LL T ++ VP +Y R Sbjct: 15 RTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYREKYSAFGRF 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE G+ R++ RALR + + ++ ++ + ADG Sbjct: 75 PGGFTKRE---GKASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILYSADG------ 123 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 V + D L + + G ++ + + G +++ + D+D Sbjct: 124 -----VDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERADMDI 178 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T +I+ V+G E S+ + A + I K Q +++ Sbjct: 179 MVAATYE-NIMMVEG--EMKEVSEQDLLEAMKFAHEAIKVHCKAQMELMEE 226 >gi|238650252|ref|YP_002916103.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii str. Rustic] gi|259534152|sp|C4K0F4|PNP_RICPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|238624350|gb|ACR47056.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii str. Rustic] Length = 748 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I+ + A GS L G+T L + T + I ++ G Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S + +A S R+ G ++ RA+ ++ I + + Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++G + A + G+ +AL +K VA I+ G++ Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKNFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + L A+ +++ Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537 Query: 234 QKDVISNE 241 VIS Sbjct: 538 MNKVISKP 545 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 31/228 (13%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75 +++ A+G+ VK G++ LL TA + K +T Y + + G K Sbjct: 23 IARQADGAVTVKMGNSVLLCTAVVANKA---KEGIGLLPLTINYREMAYAAGKIPGGFFK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133 E G+ R + R+I R +R + + + + C V+ D T AI GA Sbjct: 80 HE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 AL VAA G++ G +++ T +D Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVAG 181 Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 T SG ++ V+ +E S++ + + +IK+ K+ ++ E Sbjct: 182 T-SGSVMMVE--SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225 >gi|166030867|ref|ZP_02233696.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC 27755] gi|166029134|gb|EDR47891.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC 27755] Length = 707 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 28/250 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTTATLEEKVPMWIRNTKHGWI 59 R GRQ +Q+R ++ + GS + G T + + T + + Sbjct: 324 RPDGRQIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICDICTLAPLSEAQR-LDGLDEAET 382 Query: 60 TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118 T Y M + + E R G R + RAL V+ A I + Sbjct: 383 TKRY-MHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEADFPYAIRTVSET 441 Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172 +++G T A++ + +AL +K VA ISCG++ G Sbjct: 442 FESNGSTSQASVCASSMALMAAGV-------------PIKSAVAGISCGLVTGDTDDDYL 488 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + ++ + AK R A L Sbjct: 489 VLTDIQGLEDFFGDMDFKVAGTHEG-ITAIQMDIKIHGLTRAIIEEAI--AKTRKARLY- 544 Query: 233 LQKDVISNEV 242 + +V+S + Sbjct: 545 IMDEVMSKAI 554 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R + + V+K A G+ L+ +GDT +L TAT E + + + ++ G + Sbjct: 24 RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERMYAVGKI 83 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G+ + R+I R +R + + + D Sbjct: 84 P---GGFNKRE---GKASENAVLTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 137 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ GA +A G ++ G++ G +++ + + D Sbjct: 138 LTAMLGAAIA-------------TTISDIPFDGPISTTQVGLVDGEFVINPTAEQKAVSD 184 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ A + + A + ++IK Sbjct: 185 LALTVASTRE-KVIMIEAGANEVP--EQQMIDAIFKAHEVNQEVIK 227 >gi|62858563|ref|NP_001017016.1| exosome complex component MTR3 [Xenopus (Silurana) tropicalis] gi|123892820|sp|Q28F19|EXOS6_XENTR RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome component 6; AltName: Full=mRNA transport regulator 3 homolog gi|89269970|emb|CAJ81566.1| exosome component 6 [Xenopus (Silurana) tropicalis] gi|134024282|gb|AAI36081.1| rarg protein [Xenopus (Silurana) tropicalis] Length = 270 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 29/235 (12%) Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFG--DTHLLTTATLE-EKVPMWIRNTKHGWITA 61 GR ++ R + + + A+GS ++ G T +L E+ R G + Sbjct: 34 GRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLC 93 Query: 62 EYGMLPRSTGNRVKREAVSG----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 + P S +R SG R +Q + +L V L ++I+ Sbjct: 94 DLRWAPFS-----RRGPWSGSCPAGPSPRQAGLQ--LQESLEPAVRLDRYPRAEVIVWVL 146 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 V++ G AA++ A +AL D M D + LS+ G ++D Sbjct: 147 VLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGP------------GGELLLDP 194 Query: 178 DYGEDSTI-DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 D E+ + + + + +V G + + + L + L Sbjct: 195 DDDEEEAGSGGTMSLSLLPT--LNQVSGLISSGEWEGESSEEAVRLCMEGCQRLY 247 >gi|227503420|ref|ZP_03933469.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium accolens ATCC 49725] gi|227075923|gb|EEI13886.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium accolens ATCC 49725] Length = 748 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 30/253 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56 R+ GR +R++S+ + A GS L + G+T +L TL+ E+ + + Sbjct: 364 FRIDGRGLTDIRDLSVEVDLVPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPIES 423 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + + R+ G + RAL V+ I Sbjct: 424 KRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALLPVIPSREDFPYAIRQVS 479 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173 + + ++G T ++ + ++L++ LK VA I+ G++ G Sbjct: 480 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSGEVKGK 526 Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 + D+ ED+ D+D T I +Q + L A+D A Sbjct: 527 EKFVALTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPSKVLAQALEQARDARA 585 Query: 229 DLIKLQKDVISNE 241 +++ +VI + Sbjct: 586 TILETMAEVIDSP 598 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 70/246 (28%), Gaps = 36/246 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65 R + +++ A+GS D T LL T T E + G Sbjct: 32 RTVRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPRENFDFFPLTVDVEERMYAAGK 91 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P G+ +RE GR + R+I R LR Q++I + Sbjct: 92 IP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSQDPEEYY 145 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA A + +++ + G + ++ + Sbjct: 146 DVVAINGASAATQLSGLPVSGAVGGVRMALIADDK-------HPEGQWVAFPNHEQHERA 198 Query: 186 DVDANF----VMTDSGHIVEVQGS------------AERATFSQD-HFFAMLNLAKDRIA 228 + V V + A+ A Q+ L AK I Sbjct: 199 LFEMVVAGRIVTKGRKEDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIK 258 Query: 229 DLIKLQ 234 L + Q Sbjct: 259 TLCEAQ 264 >gi|258591357|emb|CBE67656.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [NC10 bacterium 'Dutch sediment'] Length = 695 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 81/226 (35%), Gaps = 27/226 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67 +S+ V++ A+G+ LV++GDT +L T + + + + + G +P Sbjct: 13 PLSIEAGRVARQADGAVLVRYGDTVVLVTVVASKQMRQGIDFFPLTVDYQERAYAAGKIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE G+ + R+I R LR + QII Sbjct: 73 ---GGFFKRE---GKPHDKETLTSRLIDRPLRPLFPDGYRNDVQIIATVLSADQQNDPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+ GA AL G + A+ G + G +++ Y + D+ Sbjct: 127 LAVLGASAALTIA-------------PIPFLGPIGAVRVGRVEGKLLLNPTYAQMEGSDI 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 D T S +V ++ A +D F + I +I + Sbjct: 174 DMVVAGTRSA-VVMLEAGANEIP--EDVMFEAIEFGHKGIQPMIDM 216 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 81/245 (33%), Gaps = 20/245 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57 R GR +R I+ V GS L G T L T TL + Sbjct: 312 RADGRSLEDVRPITAEVGVLPRTHGSALFTRGQTQALVTTTLGTSEDEQRLDDLEGEGTK 371 Query: 58 WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G R R G R + RAL + + S + I Sbjct: 372 RFMLHYNFPPFSVGEVRFMRG-----PGRREIGHGALAERALLAALPPKEEFSYTLRIVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A + GA ++L D + + V++ AAI + D Sbjct: 427 DILESNGSSSMATVCGASLSLMDAGVPIRSAVAGVAMGLVVEDERAAI---------LTD 477 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED D+D T G I +Q + + L A+ ++ Sbjct: 478 IIGLEDHLGDMDFKVAGTRKG-ITALQLDIKTQGIAPSLMPKALGQARRARLHILDQMDR 536 Query: 237 VISNE 241 ++ Sbjct: 537 ALTEP 541 >gi|260591852|ref|ZP_05857310.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis F0319] gi|260536136|gb|EEX18753.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis F0319] Length = 751 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 R+ GR +++R I GS + + G+T L+T TL K+ + + + Sbjct: 325 RMDGRATDEIRPIWCEVDTLPMPHGSAIFQRGETMSLSTCTLGTKMDEKMVDNVLDKSYQ 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + V R+ G + RAL+ + + + Sbjct: 385 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRALKGQIPADF--PYTVRLVSQ 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + Q + S + L AK ++ Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 544 Query: 232 KLQKDVISNE 241 L + I+ Sbjct: 545 NLLTETIAEP 554 Score = 94.0 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 85/236 (36%), Gaps = 27/236 (11%) Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR IS+ V+K A+G+ +++ G+T LL T +E VP Sbjct: 11 PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ R LR + + + ++ Sbjct: 65 EQYAAAGRYPGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSDYHCE--VYVQVMLLS 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG + D L + + + + + G +++ + Sbjct: 120 ADG-----------IDQPDALAGFAASAALAASDIPIDYPTSEVRVARVNGEYVINPTFE 168 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + D+D T +I+ V+G E S+ L A + I + ++Q++ Sbjct: 169 QMKHADMDLMVGATKD-NIMMVEG--EMDEVSEQDLIGALKAAHEAIKPMCEMQEE 221 >gi|218282268|ref|ZP_03488567.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989] gi|218216736|gb|EEC90274.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989] Length = 713 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 28/242 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +R GRQ +++R ++ + GS L G+T +L+T TL I + Sbjct: 319 VRPDGRQIDEIRPLNSQVDLLPRVHGSALFTRGETQVLSTTTLGALNDNQIIDDLTVVDS 378 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P G + G G R + RAL V+ I Sbjct: 379 KRFMHHYNFPPYCVGETGR----MGNPGRREIGHGALGERALAQVLPSVDEFPYTIRTVA 434 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 DV++++G + A+I ++L +K VA I+ G++ Sbjct: 435 DVMESNGSSSQASICAGTMSLMAAGV-------------PIKAPVAGIAMGLIMDDDSGK 481 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T +G I +Q + +++ F L A ++ Sbjct: 482 YTVLTDIQGMEDHFGDMDFKVAGTKNG-ITALQMDIKVTGITKNIFEEALAQAHKARLEI 540 Query: 231 IK 232 + Sbjct: 541 LD 542 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 91/234 (38%), Gaps = 29/234 (12%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66 R I++ ++K A+G+ ++++GDT L+TA +E + + G + Sbjct: 13 RGITVETGEIAKQADGAVIIRYGDTVTLSTACASNQAKEGIDFFPLTVSFEEKLYSVGKI 72 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR + RMI R +R + Q++ + D Sbjct: 73 P---GGFLRRE---GRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDASPE 126 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA +AL G +A G + G + + + D Sbjct: 127 MAAMFGASLALC-------------ISDIPFNGPIAGCKVGRINGELVANPTVAQMEESD 173 Query: 187 VDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 +D T + ++VE A S++ A L ++I L Q+++++ Sbjct: 174 IDLTVAGTAQALNMVE----AGAKEVSEEDMLAALMFGHEQIKKLCAFQEEIVA 223 >gi|326800482|ref|YP_004318301.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21] gi|326551246|gb|ADZ79631.1| Polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21] Length = 732 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 81/235 (34%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56 +RL GR +R I A GS + G+T LT+ TL K + + + Sbjct: 333 IRLDGRDVRTVRPIWSEVDYLPAAHGSAIFTRGETQSLTSVTLGAKEDEQMIDGAFINGY 392 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y STG R+ G + R+L+ V+ I + Sbjct: 393 SRFILHYNFPGFSTGEVRPNRGPGRREVGHG----NLAMRSLKQVLPSQEENPYTIRVVS 448 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 D+++++G + A + +AL D + V+ I+ G++ Sbjct: 449 DILESNGSSSMATVCAGTLALMDAGVK-------------ITAPVSGIAMGLITDEKTGK 495 Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 + D+ ED D+D T G IV Q + + L AK+ Sbjct: 496 YAVLSDILGDEDHLGDMDFKVTGTSKG-IVACQMDLKINGLKWEVLKEALYQAKE 549 Score = 88.2 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 21/227 (9%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTT-ATLEEKVPMWIRNTKHGWITAEYGMLPRS 69 R+I + K A+GS +VK G+T LL T + +E P +Y R Sbjct: 31 RQIEIETGKLAKQADGSVVVKMGNTMLLATVVSAQEAKPGTDFLPLSVDYQEKYAATGRI 90 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G ++REA R I R++ RALR + Q++I +I AD Sbjct: 91 PGGFLRREA---RLSDYEILISRLVDRALRPLFPDDYHADTQVMIT--LISADKDI---- 141 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 + D L + + G ++ + + G +++ + ++ Sbjct: 142 -------MPDALAGLAASAALAVSDIPFNGPISEVRVAKIDGKFVINPLLSDLERATLEF 194 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 V + IV V+G A+ S++ + A + I ++ Q + Sbjct: 195 -IVAGSANDIVMVEGEAKE--ISEEEMVEAIAFAHEAIKVQVQAQLE 238 >gi|294142055|ref|YP_003558033.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea DSS12] gi|293328524|dbj|BAJ03255.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea DSS12] Length = 705 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+ + +R +++ V GS + G+T L T TL + ++ G T Sbjct: 317 RIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 376 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R + +V+ + I + + Sbjct: 377 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----KLAWRGMNAVMPSAEDFPYSIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ G +AL D +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +++ L A ++ + Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALQQAYGARVHILNV 538 Query: 234 QKDVISNE 241 I Sbjct: 539 MDQAIGTH 546 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 27/225 (12%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 ++L V + A+ + L GDT +L T E + + T G +P Sbjct: 18 VTLETGVIARQADAAVLASMGDTTVLVTVVGKKYEEPGRDFFPLTVNYQERTYAAGKIP- 76 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + + Sbjct: 77 --GGFFKRE---GRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 131 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + G + G I++ + + D+D Sbjct: 132 SMIGTSAALA-------------ISGLPFNGPLGVARVGYINGEYILNPEVSQLVESDLD 178 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 T + ++ +E A+ ++ + +++ +I Sbjct: 179 LIVAGTQAAVLMV---ESEAASLPEEIMLGSVAYGHEQLQVVIDA 220 >gi|257460281|ref|ZP_05625384.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis RM3268] gi|257442346|gb|EEV17486.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis RM3268] Length = 704 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 80/223 (35%), Gaps = 22/223 (9%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55 R GR +++R IS+ + A GSCL G T L TL + ++ Sbjct: 323 RADGRALDEVRPISIETNILPCAHGSCLFTRGQTQALVVTTLGGDSDAQLSDSLTQLEPI 382 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y G ++ R+ G + RAL ++L++ + I + Sbjct: 383 SERFMFNYNFPGFCVGEASPLKSPGRRELGHG----NLAKRALYPSINLNS--PQSIRVV 436 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175 ++++++G + A++ G ++L + + +G A+ + Sbjct: 437 SEILESNGSSSMASVCGGALSLRAAGVPTLKLVAGVAMGLIFEGEKHAV---------LT 487 Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218 D+ ED D+D T G I +Q + S + Sbjct: 488 DIMGLEDHDGDMDFKVAGTYEG-ITALQMDIKLGGISLEVLKE 529 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 81/222 (36%), Gaps = 36/222 (16%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY--GM--LPRSTGNRVK 75 V+K A G+ L++ +T +L T EE +T +Y M R G +K Sbjct: 19 VAKQAAGAALLRVKNTVVLATVAREETQ----VQEDFLPLTVQYIEKMYAAGRIPGGYIK 74 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGA 133 RE + G R+I R+LR + QI++ V+ AD + A+ A Sbjct: 75 RET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVY--VLSADPEVDLQVVALNAA 129 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY------GEDST-ID 186 AL+ +K V + G G I++ D Sbjct: 130 SAALY-------------LSDIPIKAPVCGVRIGYENGNFILNPSNSTLKASVLDLYVAG 176 Query: 187 VDANFVMTDSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRI 227 V +M + + ++ G A++ FS+D ++ A I Sbjct: 177 VGDELLMIEMRSLPQINGDAQQMNEFSEDLMVDAIDFAAKAI 218 >gi|164688511|ref|ZP_02212539.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM 16795] gi|164602924|gb|EDQ96389.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM 16795] Length = 701 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHG 57 R R+ +++R I GS L G T ++T A + ++ + + Sbjct: 315 RPDARKTDEIRPIWCDCGFIPRTHGSGLFTRGQTQVMTITTLGALGDVQILDGLDEEESK 374 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y S G R+ G + RAL V+ I + + Sbjct: 375 RYMHHYNFPAYSVGEVRPSRGPGRREIGHG----ALAERALLPVIPSKEEFPYAIRLVSE 430 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 V+ ++G T ++ G+ ++L D +K VA I+ G++ Sbjct: 431 VLSSNGSTSQGSVCGSTLSLLDAGV-------------PIKDMVAGIAMGLIEQDGKIAI 477 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+ G I +Q + A ++ L A+ ++ Sbjct: 478 LSDIQGMEDHLGDMDFKVAGTEHG-ITAIQMDIKIAGIDEEILRTALAQARVGRLHILNE 536 Query: 234 QKDVI 238 + I Sbjct: 537 MRKTI 541 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 27/234 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 RE+S+ A GS ++K+G+T ++ + E V + + + G + Sbjct: 14 RELSVEIGKIAQLASGSAILKYGETMVMVNVSKSAEPREGVDFFPLSVDYEEKLYSVGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE G+ ++ R+I R +R + Q++ + D Sbjct: 74 P---GGFLKRE---GKASEKATLTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDHDCTPD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ VAL G +++ G++ G +++ + Sbjct: 128 VVAMIGSSVALS-------------ISEIPFNGPTGSVNVGLVDGALVINPTAEQREKSS 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + T ++ V+ A+ S + A + I ++ +++++ Sbjct: 175 LHLTVSGTKDA-VMMVEAGADEVPESL--MLEAILTAHEEIKKIVAFIEEIVAE 225 >gi|187471095|sp|Q0A7A1|PNP_ALHEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 698 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 87/248 (35%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + GS + G+T + TL I + G Sbjct: 317 RIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRDAQIIDAIEGERKE 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G R+ G ++ R + +V+ + I + + Sbjct: 377 QFMLHYNFPPYCVGETGFMGTPKRREIGHG----KLAKRGIEAVMPAADDCPYVIRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A + G ++L D +K VA I+ G++ Sbjct: 433 ITESNGSSSMATVCGTSLSLMDAGV-------------PVKAPVAGIAMGLIKEDEQFAV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+SG + +Q + +++ L A++ ++ Sbjct: 480 LSDILGDEDHLGDMDFKVAGTESG-VTALQMDIKIQGITREIMEQALEQAREGRLHILGE 538 Query: 234 QKDVISNE 241 + IS Sbjct: 539 MNNAISGP 546 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 33/227 (14%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----N 72 T V++ A+G+ LV DT +L TA ++ +T Y + G Sbjct: 19 TGGVARQADGAVLVNMSDTVVLVTAVGRKEADP---GKGFFPLTVNYQERTYAAGKIPGG 75 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 KRE GR + R+I R +R + Q++ + + A+ G Sbjct: 76 FFKRE---GRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADIPALIG 132 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 A AL G + A G G +++ + E + D+D Sbjct: 133 ASAALSISGI-------------PFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVA 179 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 T++ ++ +E ++ + +A I +L Sbjct: 180 GTENAVLMV---ESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTA 223 >gi|311739667|ref|ZP_07713502.1| polyribonucleotide nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305483|gb|EFQ81551.1| polyribonucleotide nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 748 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 95/250 (38%), Gaps = 30/250 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56 R+ GR +R++S+ + A GS L + G+T +L TL+ E+ + + Sbjct: 364 FRIDGRGVTDIRDLSVEVDLVPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVES 423 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + + R+ G + RAL V+ I Sbjct: 424 KRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALLPVIPSREDFPYAIRQVS 479 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173 + + ++G T ++ + ++L++ LK VA I+ G++ G Sbjct: 480 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSGEVNGK 526 Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 + D+ ED+ D+D T +I +Q + L A+D + Sbjct: 527 EKFVALTDILGAEDAFGDMDFKVAGTSE-YITALQLDTKLDGIPSKVLAQALEQARDARS 585 Query: 229 DLIKLQKDVI 238 +++ +VI Sbjct: 586 TILETMAEVI 595 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 74/246 (30%), Gaps = 36/246 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65 R + +++ A+GS D T LL T T E + G Sbjct: 32 RTLRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGK 91 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P G+ +RE GR + R+I R LR Q+++ + Sbjct: 92 IP---GSFFRRE---GRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYY 145 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA A + +++ + G + ++ + Sbjct: 146 DVVAINGASAATQLSGLPVSGAVGGVRMALIADDK-------HPEGQWVAFPNHEQHERA 198 Query: 186 DVDANFVMT-------DSGHIVEVQ---GS------AERATFSQD-HFFAMLNLAKDRIA 228 + D I+ V+ G+ A+ A Q+ L AK I Sbjct: 199 LFEMVVAGRIVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEATVAEGLEAAKPFIK 258 Query: 229 DLIKLQ 234 L + Q Sbjct: 259 TLCEAQ 264 >gi|163752368|ref|ZP_02159563.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica KT99] gi|161327740|gb|EDP98927.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica KT99] Length = 702 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60 R+ GR+ + +R +++ V GS + G+T L T TL + ++ G T Sbjct: 314 RIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 373 Query: 61 ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G + R+ G ++ R +++V+ + I + + Sbjct: 374 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----KLAWRGMKAVMPSAEEFPYSIRVVSE 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A + G +AL D +K VA I+ G++ Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + +Q+ L A ++ + Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITQEIMQIALQQAYGARVHILNV 535 Query: 234 QKDVISNE 241 I Sbjct: 536 MDQAIGTH 543 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 82/228 (35%), Gaps = 27/228 (11%) Query: 14 ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68 I+L V + A+ + L GDT +L T E + + T G +P Sbjct: 15 ITLETGVIARQADAAVLASMGDTTVLVTVVGKKDEEPGRDFFPLTVNYQERTYAAGKIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + Q+II + + Sbjct: 74 --GGFFKRE---GRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 ++ G AL G + G + G I++ + + + D+D Sbjct: 129 SMIGTSAALA-------------ISGLPFNGPLGVARVGYINGEYILNPEVSQLAESDLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T+ G ++ V+ +E A+ +++ + ++ +I K+ Sbjct: 176 LIVAGTE-GAVLMVE--SEAASLAEEVMLGSVAYGHEQQQVVITAIKE 220 >gi|51473686|ref|YP_067443.1| polynucleotide phosphorylase/polyadenylase [Rickettsia typhi str. Wilmington] gi|81390070|sp|Q68WN1|PNP_RICTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|51459998|gb|AAU03961.1| Polynucleotide phosphorylase [Rickettsia typhi str. Wilmington] Length = 745 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58 +R+ GR +R+I+ + A GS L G+T L + T + I ++ G Sbjct: 315 IRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYK 374 Query: 59 --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S + +A S R+ G ++ RA+ ++ I + Sbjct: 375 ERFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVA 430 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 + +++G + A + G+ +AL +K VA I+ G++ Sbjct: 431 ETTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLIKEGDKFA 477 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + L A+ +++ Sbjct: 478 ILSDIIGDEDYFGDMDFKVAGTSKG-ITALQMDIKISGIDFKIIQVALEQARHGRLHILE 536 Query: 233 LQKDVISNE 241 +IS Sbjct: 537 QMNKIISKP 545 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 32/233 (13%) Query: 12 REI-SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGM 65 R++ ++ +++ A+ + VK G++ LL T + KV + + + G Sbjct: 13 RQVLEISTGKIARQADAAVTVKMGNSILLCTCVVANKVKDGIGFFPLTINYREMAYSAGK 72 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P G +KRE G+ + + R+I R +R + + + I C V+ D T Sbjct: 73 IP---GGFLKRE---GKASDKEILVSRLIDRPIRPLFHQAFIHET--HITCSVLSYDPET 124 Query: 126 --RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183 AI GA AL VAA G++ G +++ Sbjct: 125 PVDILAIIGASAALS-------------ISPAPYLEIVAASKVGLINGEFVLNPTLELLK 171 Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 T +D T ++ V+ +E S++ + + +IKL K+ Sbjct: 172 TSQLDLVVAGTKD-SVMMVE--SEAHLLSEEKMLEAIKFGFENFQTVIKLIKE 221 >gi|290559254|gb|EFD92594.1| Exoribonuclease, phosphorolytic domain 2 [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 145 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 26/158 (16%) Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 S +R R EI ++I AL + L + I + + QAD GTR Sbjct: 1 TFSVPDR-----AKPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQADAGTR 55 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST-- 184 A++T +A D M D VAA++ G + + +DL E+ Sbjct: 56 CASLTAGAMACADAGLPMRDL-------------VAAVAAGKIGDHVCLDLSKEEEDFHE 102 Query: 185 --IDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAM 219 D + I+ +Q S+D + Sbjct: 103 GEGATDVPIAFLPSKNEILLLQLDGR---VSRDELKKV 137 >gi|282897293|ref|ZP_06305295.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9] gi|281197945|gb|EFA72839.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9] Length = 458 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 28/236 (11%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54 +R+ GR+ +++R +S + + GS L G T +L+ TL ++ Sbjct: 62 VRVDGRKLDEVRPVSSQVGLLPRRVHGSGLFNRGLTQVLSACTLGTPGDAQSLSDDLQVD 121 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y P S G A R+ G + RA+ V+ I + Sbjct: 122 QSKRYLHHYNFPPFSVGETKPLRAPGRREIGHG----ALAERAILPVLPTKEQFPYVIRV 177 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ +AL D + V+ + G++ Sbjct: 178 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PITKPVSGAAMGLIKEGSE 224 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED D+D TD+G I +Q + + S D L AKD Sbjct: 225 VRVLTDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKISGLSLDVIKQALEQAKDA 279 >gi|225572738|ref|ZP_03781493.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM 10507] gi|225039911|gb|EEG50157.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM 10507] Length = 745 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 73/231 (31%), Gaps = 31/231 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR N++R ++ + GS + G T + T T + R Sbjct: 359 RPDGRAINEIRPLAAEVDIIPRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRLDGLDEFET 417 Query: 62 E------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G R+ G + RAL V+ I Sbjct: 418 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALVPVLPTEEEFPYAIRTV 473 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172 + +++G T A+I + ++L ++ VA IS G++ G Sbjct: 474 SETFESNGSTSQASICASTMSLMAAGV-------------PIRKPVAGISAGLVTGETDD 520 Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 + D+ ED D+D T G I +Q + ++ + Sbjct: 521 DYLVLTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRPIVEEAI 570 Score = 78.6 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 27/226 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R +++ V+K A G+ L+ +GDT +L+TAT E + + + ++ G + Sbjct: 59 RTLTVDIGRVAKQANGAALMHYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMYAVGKI 118 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G KRE G+ + R+I R +R + + + + Sbjct: 119 P---GGFNKRE---GKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLSNMVMSVDPECNPE 172 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 A+ G+ ++ G A G+L G I++ + D Sbjct: 173 IPAMLGSAIS-------------TCISDIPFDGPCATTQVGLLDGEFIINPSLAQKKISD 219 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + T ++ ++ A +D + LA D ++IK Sbjct: 220 LQLTVASTRE-KVIMIEAGANE--LPEDKMIEAIYLAHDVNQEIIK 262 >gi|150390429|ref|YP_001320478.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus metalliredigens QYMF] gi|187470927|sp|A6TRK1|PNP4_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 4; AltName: Full=Polynucleotide phosphorylase 4; Short=PNPase 4 gi|149950291|gb|ABR48819.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus metalliredigens QYMF] Length = 704 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 26/225 (11%) Query: 20 VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 ++ A GSC+V++GDT +L A + E + + + + G +P G +K Sbjct: 21 YAEQASGSCMVRYGDTTVLVNATASKSPREGIDFFPLSVDYEEKLYAVGKIP---GGFIK 77 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 REA R ++ R+I R +R + Q+I + D A+ G+ + Sbjct: 78 REA---RPSEKAVLTSRLIDRPIRPLFPKGYRNEVQVIATVMSVDKDYAPDIVAMIGSSI 134 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195 AL G +++ G++ G +++ + + D+D T Sbjct: 135 ALS-------------ISDIPFGGPTGSVNVGLVNGEFVLNPTSDQRAISDIDLVVSGTK 181 Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 I+ ++ A ++D L A + I ++ +++++ Sbjct: 182 DA-IMMIESGANE--VTEDQMLDALMFAHEEIKTIVAFIEEIVAE 223 Score = 94.8 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56 +R R +++R I+ + G+ L G T +LT AT E ++ + + Sbjct: 311 VRPDERALDEIRPITSEVGILPRTHGTGLFTRGQTQVLTVATLGALGEVQILDGLGEEES 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P S G + G G R + RAL +V I + Sbjct: 371 KRYMHHYNFPPYSVGEAK---FLRG-PGRREIGHGALAERALLPMVPSQDDFPYAIRLVS 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172 +V+ ++G + A++ G+ +AL D +K VA I+ G++ Sbjct: 427 EVLSSNGSSSQASVCGSTLALLDAGV-------------PIKDMVAGIAMGLVKENDKIA 473 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D TD G I +Q + +D L A+ ++ Sbjct: 474 ILSDIQGMEDALGDMDFKVAGTDKG-ITAIQMDIKIKGIHKDILKDALEQARVGRLHILD 532 Query: 233 LQKDVISNE 241 K I Sbjct: 533 KMKKAIDKP 541 >gi|270308241|ref|YP_003330299.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Dehalococcoides sp. VS] gi|270154133|gb|ACZ61971.1| polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Dehalococcoides sp. VS] Length = 720 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 95/250 (38%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R++GR Q+R++ + GS L GDT ++ TL E + + Sbjct: 311 IRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAVTTLGSLQESQQLDGLSAEDT 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + SG G R + RAL V+ I + Sbjct: 371 KRFMLHYNFAPFSTGEVKR----SGSPGRREIGHGALAERALVPVLPTPEEFPYTIRMVA 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173 DV+ + G T ++ + ++L D +K VA IS G++ G Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGV-------------PVKKAVAGISIGLITGENDTY 473 Query: 174 --IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 I D++ ED+ D+D T G I +Q + S D + AK+ +++ Sbjct: 474 CTITDIEGIEDNYGDMDFKVAGTRDG-ITAIQVDMKVKGISFDVIRDAIYQAKEARYNIL 532 Query: 232 KLQKDVISNE 241 ++ ++ Sbjct: 533 EVMDKALAQP 542 Score = 75.9 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 27/230 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLL---TTAT-LEEKVPMWIRNTKHGWITAEYGML 66 R++ + A+ + +++ DT LL A E V + G + Sbjct: 14 RKLIIESGKIARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLTIDYEERMYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR ++ R+ R LR ++ QIII + Sbjct: 74 P---GGFIRRE---GRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIASDKENDAD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + GA L E G V A G + G +++ + + Sbjct: 128 IWGVVGASTVLTMSQIPYE-------------GPVGASRVGYINGEFVLNPTFAQLEQSQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D V T +V ++ ++ +D + A +LI LQ + Sbjct: 175 MDLVVVSTRKA-VVMIEAGSKEIP--EDLMIKAIEFAHQANQELIDLQDE 221 >gi|162447666|ref|YP_001620798.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma laidlawii PG-8A] gi|187470930|sp|A9NGE2|PNP_ACHLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|161985773|gb|ABX81422.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma laidlawii PG-8A] Length = 715 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 27/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55 +R GR +++R ++ + + GS L G T L TL I + T Sbjct: 327 VRPDGRGLDEIRPLASSVDLLPRTHGSALFTRGQTQALGIVTLGSLNENQIIDGLEQETV 386 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y P S G + G G R + RAL V+ I + Sbjct: 387 TKRFMLHYNFPPFSVGETGR----YGAPGRREIGHGALGERALLQVLPSEDEFPYAIRVV 442 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY-- 172 ++ +++G + A I +AL +K VA I+ G++ G Sbjct: 443 SEITESNGSSSQATICVGSMALMAAGV-------------PIKAPVAGIAMGLIMDGEHY 489 Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + + + L A+ ++ Sbjct: 490 SILSDIQGMEDHEGDMDFKVAGTKDG-ITALQMDIKIQGITTEIMKEALEQARKGRLHIL 548 Query: 232 KLQKDVISN 240 VIS Sbjct: 549 SHMNTVISE 557 Score = 85.1 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 26/226 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68 + + ++K A G+ ++ +GDT +L+TA + KV + + G +P Sbjct: 14 PLRVEVGEIAKQANGAAMIYYGDTVVLSTAVAKAKVGQTDFFPLMVIYAEKQYAAGKIP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +RE GR R+I R LR + D Q++ + ++ A Sbjct: 73 --GGFFRRE---GRPSEVETLTSRLIDRPLRPLFDDGYRNEVQVVNTVLSSDPEASSQMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL + G +A G + G +++ + + D+D Sbjct: 128 AMLGSSIAL-------------EISNIPFMGPIAGAHVGRIDGQFVLNPSSEQLNVSDID 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234 T I V+ A++ S++ + + I +L Q Sbjct: 175 LIVAGTKDA-INMVEAGAKQ--VSEEVMLEAILFGHEAIKELCAFQ 217 >gi|196231533|ref|ZP_03130391.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus Ellin428] gi|196224386|gb|EDY18898.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus Ellin428] Length = 716 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 93/256 (36%), Gaps = 35/256 (13%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60 R GR +Q+R++S + + GS L + G+T + ATL + G T Sbjct: 314 RCDGRGLDQIRDLSAEVGLLPRSHGSALFQRGETQAVALATLAPADEAQELDGYTGGETT 373 Query: 61 ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID 115 Y P S G + +G G R + R++ V+ D++ I + Sbjct: 374 KRFILHYNFPPFSVGETGR----TGSPGRREIGHGALAERSVEPVIPDVTKFP-YAIRVS 428 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-----C 170 +V++++G T A++ +AL D LK VA ISCG++ Sbjct: 429 SEVMESNGSTSMASVCSGVLALLDAGV-------------PLKKSVAGISCGLVTEFRAD 475 Query: 171 GYP-----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 G + D+ ED D+D T G + Q + + +D Sbjct: 476 GQLDRYTMLTDIIGSEDHFGDMDWKLCGTRDG-VTGFQLDLKLPGIPLKMMEEAIYRTRD 534 Query: 226 RIADLIKLQKDVISNE 241 ++ + +S Sbjct: 535 ARMRVLDVMDSALSQP 550 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 32/237 (13%) Query: 13 EISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67 I++ A+G+ V+ G+T + +A T++E + + A G P Sbjct: 14 PITIETGKLAKLADGAVTVRSGETIVFISAVSATTVKEGQDFFPLTVDYREKAAAVGKFP 73 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125 G KRE GR + RM R LR + L QII ++ ADG Sbjct: 74 ---GGYFKRE---GRPSEKEILTCRMTDRPLRPLFPKGYLYDTQII--GVLLSADGEVDP 125 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 I GA AL G V A+ G + G I + + + + Sbjct: 126 DILFINGASAAL-------------MVSDIPFAGPVGAVRVGRVNGQFIANPTHSQMADS 172 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 D+D +V + ++ ++G+ + ++ F A L+ A+ ++ ++ LQ++ ++ +V Sbjct: 173 DLDLVYVGNATD-VIMIEGAGDEVP--EEQFIAALHFAQTEVSKIVALQQE-LAQKV 225 >gi|114321093|ref|YP_742776.1| polynucleotide phosphorylase/polyadenylase [Alkalilimnicola ehrlichii MLHE-1] gi|114227487|gb|ABI57286.1| Polyribonucleotide nucleotidyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 720 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 87/248 (35%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R I + GS + G+T + TL I + G Sbjct: 339 RIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRDAQIIDAIEGERKE 398 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P G R+ G ++ R + +V+ + I + + Sbjct: 399 QFMLHYNFPPYCVGETGFMGTPKRREIGHG----KLAKRGIEAVMPAADDCPYVIRVVSE 454 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173 + +++G + A + G ++L D +K VA I+ G++ Sbjct: 455 ITESNGSSSMATVCGTSLSLMDAGV-------------PVKAPVAGIAMGLIKEDEQFAV 501 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T+SG + +Q + +++ L A++ ++ Sbjct: 502 LSDILGDEDHLGDMDFKVAGTESG-VTALQMDIKIQGITREIMEQALEQAREGRLHILGE 560 Query: 234 QKDVISNE 241 + IS Sbjct: 561 MNNAISGP 568 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 33/227 (14%) Query: 17 TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----N 72 T V++ A+G+ LV DT +L TA ++ +T Y + G Sbjct: 41 TGGVARQADGAVLVNMSDTVVLVTAVGRKEADP---GKGFFPLTVNYQERTYAAGKIPGG 97 Query: 73 RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132 KRE GR + R+I R +R + Q++ + + A+ G Sbjct: 98 FFKRE---GRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADIPALIG 154 Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192 A AL G + A G G +++ + E + D+D Sbjct: 155 ASAALSISGI-------------PFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVA 201 Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232 T++ ++ +E ++ + +A I +L Sbjct: 202 GTENAVLMV---ESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTA 245 >gi|255325195|ref|ZP_05366301.1| polyribonucleotide nucleotidyltransferase [Corynebacterium tuberculostearicum SK141] gi|255297760|gb|EET77071.1| polyribonucleotide nucleotidyltransferase [Corynebacterium tuberculostearicum SK141] Length = 748 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 95/250 (38%), Gaps = 30/250 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56 R+ GR +R++S+ + A GS L + G+T +L TL+ E+ + + Sbjct: 364 FRIDGRGVTDIRDLSVEVDLVPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVES 423 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + + R+ G + RAL V+ I Sbjct: 424 KRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALLPVIPSREDFPYAIRQVS 479 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173 + + ++G T ++ + ++L++ LK VA I+ G++ G Sbjct: 480 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSGEVNGK 526 Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 + D+ ED+ D+D T +I +Q + L A+D + Sbjct: 527 EKFVALTDILGAEDAFGDMDFKVAGTSE-YITALQLDTKLDGIPSKVLAQALEQARDARS 585 Query: 229 DLIKLQKDVI 238 +++ +VI Sbjct: 586 TILETMAEVI 595 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 74/246 (30%), Gaps = 36/246 (14%) Query: 12 REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65 R + +++ A+GS D T LL T T E + G Sbjct: 32 RTLRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGK 91 Query: 66 LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125 +P G+ +RE GR + R+I R LR Q+++ + Sbjct: 92 IP---GSFFRRE---GRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYY 145 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 AI GA A + +++ + G + ++ + Sbjct: 146 DVVAINGASAATQLSGLPVSGAVGGVRMALIADDK-------HPEGQWVAFPNHEQHERA 198 Query: 186 DVDANFVMT-------DSGHIVEVQ---GS------AERATFSQD-HFFAMLNLAKDRIA 228 + D I+ V+ G+ A+ A Q+ L AK I Sbjct: 199 LFEMVVAGRIVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIK 258 Query: 229 DLIKLQ 234 L + Q Sbjct: 259 TLCEAQ 264 >gi|327312938|ref|YP_004328375.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola F0289] gi|326944531|gb|AEA20416.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola F0289] Length = 751 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R+ GR +++R I GS L + G+T L+T TL K+ + + + Sbjct: 325 RMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + V R+ G + RAL+ + + + Sbjct: 385 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRALKGQIPADF--PYTVRLVSQ 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + Q + S + L AK ++ Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 544 Query: 232 KLQKDVISNE 241 L D I+ Sbjct: 545 NLLTDTIAEP 554 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 27/236 (11%) Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR IS+ V+K A+G+ +++ G+T LL T +E VP Sbjct: 11 PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ R LR + + + ++ Sbjct: 65 EQYSAAGRYPGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSDYHCE--VYVQVMLLS 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD V D L + ++ + + + G ++D + Sbjct: 120 AD-----------SVDQPDALAGFAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFE 168 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + D+D T +I+ V+G E S+ L A + I + ++Q++ Sbjct: 169 QMKEADMDLMVGATKD-NIMMVEG--EMDEVSEQDLIGALKAAHEAIKPMCEMQEE 221 >gi|325688998|gb|EGD31006.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK115] gi|325695521|gb|EGD37421.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis SK150] Length = 733 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 IRPDGRKVDEIRPLDAEVDYLPCVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + A + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITAEILTEALAQAKKARFEILD 538 Query: 233 LQKDVI 238 L + I Sbjct: 539 LIEATI 544 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67 RE+ + V+K A GS +V++G++ +LT AT+ +K + + G P Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G KRE GR + R+I R +R + Q+I D + Sbjct: 73 ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 AA+ G+ +AL G +A + G + G I++ + + Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + T I V+ A+ S+D L + + +LI Q+++I+ Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIIA 222 >gi|238926818|ref|ZP_04658578.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei ATCC 43531] gi|238885350|gb|EEQ48988.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei ATCC 43531] Length = 689 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTK 55 +R GR +++R +S + GS L G T +L T T +E++ + Sbjct: 310 IRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVL-TVTTLGSIGDEQIIDGLGPET 368 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G + R+ G + RAL ++ I + Sbjct: 369 TKHYLHHYNFPGYSVGEARPMRSPGRREIGHG----ALAERALFPMIPSIEDFPYTIRLV 424 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++++++G + ++ G+ ++L +K V+ ++ G++ Sbjct: 425 SEILESNGSSSMGSVCGSTLSLMCAGV-------------PIKRPVSGVAMGLVRDGDDY 471 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226 + D+ ED+ D+D T G I +Q + A ++D + L AK Sbjct: 472 SILTDIQGMEDALGDMDFKVAGTSKG-ITAIQMDIKIAGITRDILASALEQAKQG 525 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 27/229 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R++++ K A G+ LV++GDT +L TAT E V + + G + Sbjct: 11 RKLTVEYGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDYEEKMYAAGKI 70 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G +KRE GR + R+I R +R + QI+ ++ D Sbjct: 71 P---GGFIKRE---GRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPAE 124 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AA+ GA AL G +A + G + G +++ E+ D Sbjct: 125 IAAMLGASCAL-------------TISDIPFMGPIAGVRVGYINGSFVINPT--EEQRAD 169 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 D N + S V + + ++ + I L++ Q+ Sbjct: 170 SDLNLTVAGSYDAVMMVEAG-ANELPEEIVLDAILFGHAEIRRLVEFQQ 217 >gi|303238032|ref|ZP_07324575.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens FB035-09AN] gi|302481822|gb|EFL44874.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens FB035-09AN] Length = 739 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 R+ GR +++R I GS + G+T L T TL K+ + + + Sbjct: 316 RMDGRACDEIRPIWCEVDPLPMPHGSAYFQRGETLALATCTLGTKLDEKMVDNVLDKSYQ 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + V R+ G + R L+ ++ + + Sbjct: 376 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRGLKGMIPEDF--PYTVRLVSQ 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 V++++G + A + +AL D +K V+ I+ G++ Sbjct: 430 VLESNGSSSMATVCSGTLALMDAGV-------------PIKKPVSGIAMGLIKNPGEDKY 476 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + S + L AK ++ Sbjct: 477 AVLSDILGDEDHLGDMDFKTTGTRDG-ITATQMDIKCDGLSFEILEKALMQAKQAREFIL 535 Query: 232 KLQKDVISNE 241 + I Sbjct: 536 DKITETIPEP 545 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 92/233 (39%), Gaps = 22/233 (9%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69 R I++ V+K A+G+ +++ G+T LL T +E VP +Y R Sbjct: 5 RNITIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGRF 64 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE G+ R++ R LR + ++ + ++ ADG Sbjct: 65 PGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSD--YHTEVFVSVMLLSADG------ 113 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 V + D L + ++ ++ + + G I++ + + D+D Sbjct: 114 -----VDMPDALAGFAASAAMQCSDIPIEHPISEVRVARVNGEYIINPTFEQMKEADMDI 168 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242 T +I+ V+G E S+ L A D I + ++Q++ ++ E+ Sbjct: 169 MVGATKD-NIMMVEGEMEE--VSEQDLIDALKAAHDAIKPMCEIQEE-LAKEL 217 >gi|325859693|ref|ZP_08172823.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola CRIS 18C-A] gi|325482619|gb|EGC85622.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola CRIS 18C-A] Length = 742 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R+ GR +++R I GS L + G+T L+T TL K+ + + + Sbjct: 316 RMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 375 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + V R+ G + RAL+ + + + Sbjct: 376 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRALKGQIPADF--PYTVRLVSQ 429 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 430 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 476 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + Q + S + L AK ++ Sbjct: 477 AVLSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 535 Query: 232 KLQKDVISNE 241 L D I+ Sbjct: 536 NLLTDTIAEP 545 Score = 95.9 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 27/236 (11%) Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR IS+ V+K A+G+ +++ G+T LL T +E VP Sbjct: 2 PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 55 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ R LR + + + ++ Sbjct: 56 EQYSAAGRYPGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSDYHCE--VYVQVMLLS 110 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD V D L + ++ + + + G ++D + Sbjct: 111 AD-----------SVDQPDALAGFAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFE 159 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + D+D T +I+ V+G E S+ L A + I + ++Q++ Sbjct: 160 QMKEADMDLMVGATKD-NIMMVEG--EMDEVSEQDLIGALKAAHEAIKPMCEMQEE 212 >gi|312380418|gb|EFR26416.1| hypothetical protein AND_07550 [Anopheles darlingi] Length = 738 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 85/242 (35%), Gaps = 16/242 (6%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52 +R GR + +R IS + + K GS L + G T + +T L+ + V Sbjct: 310 VRCDGRGLDDLRPISCSVNLHKPLHGSALFQRGQTQVFSTVALDSPESALRLDPVTSLDA 369 Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K Y P +TG K G G R + + L ++ I Sbjct: 370 GMKSKNFFLHYEFPPYATGETGK----IGPIGRREIGHGALAEKGLVPIIPAE--HPFTI 423 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A + +AL D + + + + V K + +L Sbjct: 424 RLTSEVLESNGSSSMATVCAGSMALMDAGVPVTEAAAGVAIGLVTKYENND-TKHLLDYR 482 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + DL ED D+D T G I +Q + L + + ++ Sbjct: 483 ILSDLLGIEDYMGDMDMKVAGTRRG-ITAIQADLKIPGIPLKVVMEALQKSMEARFKILD 541 Query: 233 LQ 234 + Sbjct: 542 IM 543 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 27/231 (11%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R + ++ +++A+G +V GDT ++ TA +K +NT + +Y + Sbjct: 7 RVVRISSGKYARFADGCAVVTIGDTAVMVTAVARQK----SQNTSFLPLVVDYRQKSAAA 62 Query: 71 GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G R+ + G +EI R++ R++R + QI+ + I + Sbjct: 63 G-RIPTNFLRRELGPSEKEILSARLVDRSIRPLFPADFRLDTQIVCNMLAIDSSNPPDVQ 121 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 AI GA AL G V A+ G++ IV+ E +D Sbjct: 122 AINGASAALA-------------LSDIPWNGPVGAVRLGLVDNEVIVNPTRREMQLSALD 168 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQK 235 T +V ++G +++ + +I +LQK Sbjct: 169 LVVTATRQNLVVMLEG--RGNVVNENEIRMAIKRGTKEAQLIINGIERLQK 217 >gi|15807057|ref|NP_295786.1| polynucleotide phosphorylase/polyadenylase [Deinococcus radiodurans R1] gi|6459851|gb|AAF11608.1|AE002042_3 polynucleotide phosphorylase [Deinococcus radiodurans R1] Length = 810 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN---TKH 56 +R GR +R I + R A GS + G+T +L T E+ + I + Sbjct: 349 LRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGTERDEILIDDLTAESG 408 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + G Q R + RA+R+V+ I + Sbjct: 409 DKFLLHYNFPPYSTGEVKR----MGGQSRREIGHGNLAKRAIRAVLPSFEEFPYVIRVVG 464 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 DV++++G + + ++L D LK VA ++ G++ Sbjct: 465 DVLESNGSSSMGTVCAGTLSLMDAGV-------------PLKAPVAGVAMGLVMEGDNYR 511 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + + L AK+ ++ Sbjct: 512 VLTDILGLEDALGDMDFKVCGTAEG-VTALQMDIKVGGITPQIMREALAQAKEGRLHILG 570 Query: 233 LQKDVIS 239 +V++ Sbjct: 571 KMAEVLA 577 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 31/238 (13%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 RE+S+ GS V++GDT LL TA + +T E+ + Sbjct: 44 RELSIETGKLAKLVSGSVTVRYGDTLLLVTAQASDTQSKLDFLP----LTVEFEERHYAV 99 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + +RE GR G ++ R+ R +R + Q+II V+ ADG Sbjct: 100 GKIPGSFQRRE---GRPGEKAILSARITDRQIRPLFPKGYRHETQVIIT--VLSADGQN- 153 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D L + + G A + G + G +V+ + + Sbjct: 154 ----------APDVLGPIGAAAALSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSR 203 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA---KDRIADLIKLQKDVISNE 241 +D T ++ V+ A+ T S+D + A + LI+ + + +E Sbjct: 204 MDLVVAGTREA-VMMVECGAQ--TVSEDDLVGAIEFAHAEMQGVIALIEQMRAEVGHE 258 >gi|159028376|emb|CAO87274.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 717 Score = 99.4 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 88/251 (35%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54 +R+ GR+ +++R IS V + GS L G T +L+ ATL Sbjct: 322 VRVDGRKLDEVRPISCLVGVLPRRVHGSGLFNRGLTQVLSIATLGTPGDAQDLGDDLHPE 381 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y P S G + R+ G + RA+ V+ + + Sbjct: 382 DEKRYLHHYNFPPFSVGETRPMRSPGRREIGHG----ALAERAIVPVLPPQEEFPYVLRV 437 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ +AL D LK V+ + G++ Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKKPVSGAAMGLIKEGEE 484 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D TDSG I +Q + + + + A + Sbjct: 485 VRILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKIPGLTMEVVAKAIEQALPARKHI 543 Query: 231 IKLQKDVISNE 241 ++ + Sbjct: 544 LEKMLATLEKP 554 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 26/231 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67 R+I L + A GS L++ G+T +L TAT E V + G +P Sbjct: 13 RDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAKAREGVDFLPLTVDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR ++ R+I R LR + Q++ + + Sbjct: 73 ---GGFLRRE---GRPPEKAILTGRLIDRPLRPLFPSWLRDDIQVVATTLSMDEEVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA VA+ +G +AA+ G+L I++ Y E ++ Sbjct: 127 LAVTGASVAVLLAGI-------------PFQGPMAAVRVGLLGDEFIINPTYKEIHNGEL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 D + G +V ++ A + + ++ + + DLI Q+++I Sbjct: 174 DLVVAGSPEG-VVMIEAGANQ--LPERDIIEAIDFGYEAVRDLITAQRELI 221 >gi|148225933|ref|NP_001079391.1| exosome component 8 [Xenopus laevis] gi|27371055|gb|AAH41271.1| MGC52847 protein [Xenopus laevis] gi|76779666|gb|AAI06634.1| MGC52847 protein [Xenopus laevis] Length = 276 Score = 99.0 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 89/256 (34%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+ +L E P + G++ Sbjct: 23 RPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAELAAPP-ADSPDKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGG-RSQEIQRMIGRALRSVVDLSAL----GSRQIIIDC 116 + P + R G + SQ + +I + ++ L G ++ C Sbjct: 82 NVDLTPLCSSQF--RPGPPGEEAQVASQFMADVIDNS--QMLLKEDLCIAHGKLAWVLYC 137 Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165 D+ + DG + AL + + + + K + + + H A S Sbjct: 138 DLICLDYDGNLLDTCMCALVAALQNVRLPSVKINEETGLAEVNLKTKCALKILKHPVATS 197 Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + +VD E+S V + + + + S + ++ A Sbjct: 198 FALFDDTSLLVDPTGEEESLASGLLTVVTDEDERLCATRKPG-GSALSAEKLQECISRAI 256 Query: 225 DRIADLIKLQKDVISN 240 R ++ L ++ +++ Sbjct: 257 TRHKEVTNLLQEALAS 272 >gi|157803761|ref|YP_001492310.1| polynucleotide phosphorylase/polyadenylase [Rickettsia canadensis str. McKiel] gi|187611280|sp|A8EYU2|PNP_RICCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|157785024|gb|ABV73525.1| polyribonucleotide nucleotidyltransferase [Rickettsia canadensis str. McKiel] Length = 747 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I+ + A GS L G+T L ++TL + I + G Sbjct: 316 RIDGRSTMDIRQIACEVGLLPSAHGSALFTRGETQSLVSSTLGTSLDEQIVDNLEGEYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S + +A S R+ G ++ RA+ ++ I + + Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++G + A + G+ +AL +K VA I+ G++ Sbjct: 432 TTESNGSSSMATVCGSSLALMQTGI-------------PIKAPVAGIAMGLVKEGKKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + L A+ +++ Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537 Query: 234 QKDVISNE 241 VIS Sbjct: 538 MNKVISKP 545 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 29/227 (12%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75 +++ A+GS VK G++ LL TA + +E + + + + G +P G K Sbjct: 23 IARQADGSVTVKMGNSVLLCTAVVANTAKEGIGFFPLTINYREMAYAVGKIP---GGFFK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135 RE G+ R + R+I R +R + + + + C V+ D T Sbjct: 80 RE---GKASEREVLVSRLIDRPIRPLFHPAFVNET--HVTCTVLSYDPET---------- 124 Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MT 194 D L + + VAA G++ G +++ T +D T Sbjct: 125 -PVDILAIIGASAALALSPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVAGTT 183 Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 +S +VE +E S+ + + ++K+ K+ ++ E Sbjct: 184 ESVMMVE----SEAHLLSEAQMLEAVKFGFESFQPVVKIIKE-LAEE 225 >gi|307187131|gb|EFN72375.1| Exosome complex exonuclease RRP43 [Camponotus floridanus] Length = 284 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 84/258 (32%), Gaps = 25/258 (9%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +R GR+ R +S+ A+ S + K GDT + E P HG+I Sbjct: 22 IRPDGRKFLSFRPVSVNVSSIVQADSSAIFKLGDTSAVCGIKAELATPK-ADIPDHGYIV 80 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG---SRQIII- 114 + P + G ++Q + ++I L +DL L ++ + + Sbjct: 81 PNVELSPLCSPKFR-----PGPPSEQAQVLSKLIDIVLSNSRALDLKDLCICKNKLVWVL 135 Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQH--MEDCSNKFQLSQV-------LKGHVAA 163 CD+ + +G A I AL + ++ ++ + Sbjct: 136 YCDILCLNYNGSVIDACIGAMIAALKTLTLPEINYNSETGVIVTHPENRKAFTVRTLPVS 195 Query: 164 ISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222 S + ++ D E+ + VM D I + SQ+ L + Sbjct: 196 ASFAIFEKQLLLVDPSDDEEDMSSTRFSIVMDDEEEICYIHKPG-GIPISQNLLCKGLEM 254 Query: 223 AKDRIADLIKLQKDVISN 240 K R + + IS Sbjct: 255 TKVRAKSIRSVINAAIST 272 >gi|304383335|ref|ZP_07365801.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM 16973] gi|304335503|gb|EFM01767.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM 16973] Length = 780 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 88/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57 RL GR+ +++R I GS + G+T LTT TL K+ + + + Sbjct: 325 RLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLTTCTLGTKLDEKMIDDVLDKSYQ 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + +V R+ G + R L+ + + + Sbjct: 385 RFILHYNFPPFCTGEARPQRSVGRREIGHGH----LAWRGLKGQIPAD--YPYTVRLVSQ 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + Q + S + L AK ++ Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEEALMQAKAGREHIL 544 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 545 GKITETIAEP 554 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR IS+ ++K +GS +V+ G+T LL T ++ VP Sbjct: 11 PDGRS------ISVETGRLAKQTDGSVVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ R LR + + ++ ++ ++ Sbjct: 65 EQYAAAGRFPGGFTKRE---GKPSDNEILTSRLVDRVLRPLFPSN--YHAEVFVNVMLLS 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG + D L + H++ + + G +V+ Sbjct: 120 ADG-----------IDQPDALAGFAASAAMACSDIPFDFHISEVRVARVNGKYVVNPTSE 168 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ L +A I + +Q++ +S Sbjct: 169 QMKEADMDIMVGATKD-NIMMVEG--EMKEVSEQDLIEALKVAHQAIIPMCDVQEE-LSK 224 Query: 241 EV 242 E+ Sbjct: 225 EL 226 >gi|218245144|ref|YP_002370515.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC 8801] gi|257058170|ref|YP_003136058.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC 8802] gi|226702645|sp|B7K339|PNP_CYAP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|218165622|gb|ACK64359.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8801] gi|256588336|gb|ACU99222.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8802] Length = 718 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 26/232 (11%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTT---ATLEEKVPMWIRNTKHGWITAEYGMLP 67 R+I L + A GS L++ GDT +L T AT E + + G +P Sbjct: 13 RDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATRATGREGIDFLPLTVDYEERLYAAGRIP 72 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127 G ++RE GR ++ I R+I R LR + QII + + Sbjct: 73 ---GGFLRRE---GRPPEKAILISRLIDRPLRPLFPQWLRDDIQIIATTLSMDEEVPPDV 126 Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187 A+TGA +A+ G +AA+ G++ I++ Y E D+ Sbjct: 127 LAVTGASIAVIAA-------------RIPFFGPMAAVRVGLIGDDFIINPTYREIEIGDL 173 Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 D + G +V V+ A + + ++ + + DLI+ Q+DV+ Sbjct: 174 DLVVAGSPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIQAQRDVME 222 Score = 94.8 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 89/251 (35%), Gaps = 28/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54 +R+ GR+ +++R IS + + GS L G T +L+ ATL + Sbjct: 323 VRVDGRKLDEVRPISSRVCLLPRRVHGSALFARGLTQVLSLATLGTPGDAQDLADDLHPE 382 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 Y P S G + R+ G + RA+ ++ I + Sbjct: 383 DEKRYLHHYNFPPFSVGETKPLRSPGRREIGHG----ALAERAITPILPPQEEFPYVIRV 438 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171 +V+ ++G T ++ G+ +AL D + V+ + G++ Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PITKPVSGAAMGLIKEGDE 485 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D TDSG I +Q + S + + A + Sbjct: 486 VRILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSMEIVAKAIEQALPARLHI 544 Query: 231 IKLQKDVISNE 241 + + +S Sbjct: 545 LDKMMETLSTP 555 >gi|332667455|ref|YP_004450243.1| polyribonucleotide nucleotidyltransferase [Haliscomenobacter hydrossis DSM 1100] gi|332336269|gb|AEE53370.1| Polyribonucleotide nucleotidyltransferase [Haliscomenobacter hydrossis DSM 1100] Length = 777 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 20/243 (8%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----H 56 +RL GR +++R I GS + G+T LT+ TL K + + H Sbjct: 324 IRLDGRGPSEIRHIWSEVDYLPSTHGSAIFTRGETQALTSLTLGTKTDEQMIDNSQEMYH 383 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G R+ G + + R+LR V+ + I Sbjct: 384 EKFILHYNFPGYSVGEVKPSRGPGRREVGHA----NLAARSLRKVMPADL--PYTVRIVS 437 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176 D+++++G + A + +AL D ++ + + + +G AI + D Sbjct: 438 DILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGMIKEGDRVAI---------LSD 488 Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + ED+ D+D T++G I Q + D L+ A++ ++ K Sbjct: 489 ILGDEDALGDMDFKVTGTENG-ITGCQMDIKIDGLPYDLLVRALSQAREGRLHILNEMKK 547 Query: 237 VIS 239 I Sbjct: 548 TIE 550 Score = 78.6 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 31/230 (13%) Query: 3 LSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 G RE+ + A+GS +V+ G+T + AT +++ ++ Sbjct: 14 PDG------REVIIETGKLATQADGSVVVRCGNTMIFAVATSDKEA---RAGQDFFPLSV 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVI 119 +Y ++ R+ EI R++ RA+R + + QI+I+ Sbjct: 65 DYQ-EKFASSGRIPGNFFRRETKLSDYEILCSRLVDRAIRPLFPNHYMNDTQIMINL--- 120 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179 I+ + D + + +G ++ + + G +++ Sbjct: 121 ----------ISVEKNEMPDAFVALAASAALSVSDIPFQGPISEVRVARINGEFVINPGK 170 Query: 180 GEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228 T D+D T +VE E ++ L +A + I Sbjct: 171 EALKTADIDLIVAATLQDITMVE----GEAKEMDEESMIDALRIAHEAIK 216 >gi|223933942|ref|ZP_03625902.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis 89/1591] gi|302024508|ref|ZP_07249719.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis 05HAS68] gi|330833543|ref|YP_004402368.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3] gi|223897389|gb|EEF63790.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis 89/1591] gi|329307766|gb|AEB82182.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3] Length = 739 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 28/247 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + + Sbjct: 317 VRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLGDEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115 Y S G+ + G G R + RAL V+ L I + Sbjct: 377 KRFLHHYNFPQYSVGSTGR----YGAPGRREIGHGALGERALEQVLPSLEDFP-YAIRLV 431 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 +V++++G + A+IT +AL +K VA I+ G++ Sbjct: 432 AEVLESNGSSSQASITAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNY 478 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I +Q + + L AK +++ Sbjct: 479 TVLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIDGITPQILEEALAQAKKARFEIL 537 Query: 232 KLQKDVI 238 + + I Sbjct: 538 DVIEATI 544 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 26/231 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68 ++ + V+K A G+ +V++GD+ +LT A + +K + + G P Sbjct: 14 KLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+I R +R + Q+I D A Sbjct: 73 --GGWMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAPMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL G +A + G + G I++ D + +D Sbjct: 128 AMFGSSLALA-------------ISDIPFNGPIAGVQVGYVNGELIINPDKAQMEESLLD 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 I V+ A+ S+D L + I +L+ Q +++ Sbjct: 175 LTVAGNKDA-INMVESGAKE--LSEDIMLEALLKGHEAIQELLDFQNQIVA 222 >gi|15602979|ref|NP_246051.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida subsp. multocida str. Pm70] gi|81636811|sp|Q9CLU1|PNP_PASMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|12721458|gb|AAK03198.1| Pnp [Pasteurella multocida subsp. multocida str. Pm70] Length = 714 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R + + V GS + G+T L ATL + I + G Sbjct: 317 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 376 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 377 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 433 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 479 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + + + LN AK ++ + Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITAEIMQIALNQAKSARLHILGV 538 Query: 234 QKDVI 238 + I Sbjct: 539 MEQAI 543 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 73/228 (32%), Gaps = 27/228 (11%) Query: 14 ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68 ++L +++ A + + DT + T ++E + + T G +P Sbjct: 15 VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 73 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR I R+I R +R + QI+ + Sbjct: 74 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLV 128 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ GA AL G + A G + +++ E +D Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLD 175 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 TD ++ +E +++ A + + +I K+ Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGHQQQQVVIDAIKE 220 >gi|195053730|ref|XP_001993779.1| GH21615 [Drosophila grimshawi] gi|193895649|gb|EDV94515.1| GH21615 [Drosophila grimshawi] Length = 760 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 17/249 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------- 54 R GR + +R I+ + K GS L + G T + T +L+ + +T Sbjct: 346 RCDGRDYDSLRNINCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDTLAALESG 405 Query: 55 --KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112 K Y P +TG + G G R + R L + + Sbjct: 406 GLKAKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERGLLPTLPHD--YPFTV 459 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172 + +V++++G + A++ G +AL D + + + V K + + Sbjct: 460 RLTSEVLESNGSSSMASVCGGSLALMDAGVPIIAPAAGVAIGLVTKYENED-TKHLQDYR 518 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G +Q + L A D A ++ Sbjct: 519 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKAKILD 577 Query: 233 LQKDVISNE 241 + D I Sbjct: 578 IMADTIREP 586 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 83/236 (35%), Gaps = 36/236 (15%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 R ++L+ ++A G+ + + GDT ++ TA + K + +Y ++ Sbjct: 41 RNMTLSSGKLARFANGTAVCQMGDTAVMVTAVAKAKATP---GQNFMPLVVDYRQKNAAS 97 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G N ++RE R R+I R+LR + Q++ + + A Sbjct: 98 GRIPMNFMRRELG---PSEREILSARLIDRSLRPLFPKDYRNETQLVCNMLAMDAVHSPD 154 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 AI A +AL G + A+ G+ G +++ E + Sbjct: 155 ILAINAASMALS-------------VSDIPWHGPIGAVRVGLCDGEVLINPTRRELQSSQ 201 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQK 235 +D T +V ++G +L K I ++ +LQK Sbjct: 202 LDLVVSATKQNLVVMLEGKGNVVL-----MQDLLKAIKQGTREAQFIIHEIERLQK 252 >gi|326473180|gb|EGD97189.1| exosome complex endonuclease 1/ribosomal RNA processing protein [Trichophyton tonsurans CBS 112818] Length = 286 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 25/206 (12%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 +RL GR+ N++R + + + GS + G+T +L T + Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKR----------- 62 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119 + + K SG + + E+ + A + + I + V+ Sbjct: 63 ---SETAGAAAQKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVSVL 119 Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCG-----Y 172 +DG A + +AL D M + + A++ + G Sbjct: 120 SSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGINESLD 179 Query: 173 PIVDLDYGED---STIDVDANFVMTD 195 P++D+ E+ + V M D Sbjct: 180 PLLDISAPEEVELPYMTVANTNPMPD 205 >gi|291229746|ref|XP_002734834.1| PREDICTED: exosome component 9-like [Saccoglossus kowalevskii] Length = 421 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 91/260 (35%), Gaps = 30/260 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R+ GRQ R ++ G C V+ GDT +L + E P R T+ G + Sbjct: 53 RVDGRQAYDFRNAKISFG---QDLGHCEVQLGDTRVLCQVSCEIIEPRQNRPTEGG-LYF 108 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113 + P ++ GRQ EI R + + +R +D +L G + +I Sbjct: 109 NVELSPMASP-----LFEPGRQSEFGIEIIRFLEKTVRDSRAIDTESLCIVAGEKVWEIR 163 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163 ID V+ DG A AL + + +++ +S + + Sbjct: 164 IDIHVLNHDGNIMDCVTMAAVTALSHFRRPDVSVVGEDVQVHSAADRDPVSLSVHHLPVS 223 Query: 164 ISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221 ++ Y +VD E+ +D M + S +D Sbjct: 224 VTFAYFDEGKYLLVDPTEREECVMDGSMILSMNIHRELCTAHMSG-DMLLVKDQIIRCTQ 282 Query: 222 LAKDRIADLIKLQKDVISNE 241 A ++++L L K + N+ Sbjct: 283 TAIVKVSELTDLIKKALEND 302 >gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864] Length = 227 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 21/240 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR NQ+RE+S+ V A+GS DT LT +V Sbjct: 4 RADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAVYGPAEVKSSK---------- 53 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 +L ++T V R +G G + ++ +AL V+ +A I + V+ Sbjct: 54 --ELLDKATVQTVFRP-KTGLAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHD 110 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG A+ A +AL D M + + G ++D E Sbjct: 111 DGALLACALNSASMALIDAGVPMSAVLAAVTCAWLPAAD------GSSERRLLLDPTLEE 164 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 + A F + E+ S+ + D +F + +A+ A+++ + + + Sbjct: 165 QTAATSIATFAFESTNQ--EIVFSSTEGQLTVDEYFYTIEMAQKAAANVLAFMRLSLERK 222 >gi|187610335|sp|Q9RSR1|PNP_DEIRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase Length = 779 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN---TKH 56 +R GR +R I + R A GS + G+T +L T E+ + I + Sbjct: 318 LRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGTERDEILIDDLTAESG 377 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + G Q R + RA+R+V+ I + Sbjct: 378 DKFLLHYNFPPYSTGEVKR----MGGQSRREIGHGNLAKRAIRAVLPSFEEFPYVIRVVG 433 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 DV++++G + + ++L D LK VA ++ G++ Sbjct: 434 DVLESNGSSSMGTVCAGTLSLMDAGV-------------PLKAPVAGVAMGLVMEGDNYR 480 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED+ D+D T G + +Q + + L AK+ ++ Sbjct: 481 VLTDILGLEDALGDMDFKVCGTAEG-VTALQMDIKVGGITPQIMREALAQAKEGRLHILG 539 Query: 233 LQKDVIS 239 +V++ Sbjct: 540 KMAEVLA 546 Score = 71.7 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 31/238 (13%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70 RE+S+ GS V++GDT LL TA + +T E+ + Sbjct: 13 RELSIETGKLAKLVSGSVTVRYGDTLLLVTAQASDTQSKLDFLP----LTVEFEERHYAV 68 Query: 71 G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 G + +RE GR G ++ R+ R +R + Q+II V+ ADG Sbjct: 69 GKIPGSFQRRE---GRPGEKAILSARITDRQIRPLFPKGYRHETQVIIT--VLSADGQN- 122 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 D L + + G A + G + G +V+ + + Sbjct: 123 ----------APDVLGPIGAAAALSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSR 172 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA---KDRIADLIKLQKDVISNE 241 +D T ++ V+ A+ T S+D + A + LI+ + + +E Sbjct: 173 MDLVVAGTREA-VMMVECGAQ--TVSEDDLVGAIEFAHAEMQGVIALIEQMRAEVGHE 227 >gi|282878811|ref|ZP_06287578.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC 35310] gi|281299019|gb|EFA91421.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC 35310] Length = 778 Score = 99.0 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 28/242 (11%) Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR IS+ V+K A+GS +V+ G+T LL T ++ VP Sbjct: 11 PDGRT------ISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ RALR + + ++ + ++ Sbjct: 65 EQYSAAGRFPGGFTKRE---GKPSDNEILTSRLVDRALRPLFPSN--YHAEVYVQIMLLS 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 ADG V D L + + +++ + + G +++ + Sbjct: 120 ADG-----------VDQPDALAGLAASAAMACSDIPFDFYISEVRVARINGEYVINPTFE 168 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 + D+D T +I+ V+G E S+ L A + I + +Q + ++ Sbjct: 169 QMKQADMDLMVGATKD-NIMMVEG--EMKEVSELDLINALKAAHEAIKPMCAVQDE-LNK 224 Query: 241 EV 242 E+ Sbjct: 225 EL 226 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 88/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 RL GR+ +++R I GS + G+T L+T TL K+ + + + Sbjct: 325 RLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYQ 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + R L+ + + + Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQLPDDF--PYTVRLVSQ 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + Q + S + L AK ++ Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALLQAKAGREHIL 544 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 545 NKMLETIAEP 554 >gi|67459113|ref|YP_246737.1| polynucleotide phosphorylase/polyadenylase [Rickettsia felis URRWXCal2] gi|75536454|sp|Q4ULK1|PNP_RICFE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|67004646|gb|AAY61572.1| Polyribonucleotide nucleotidyltransferase [Rickettsia felis URRWXCal2] Length = 747 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR +R+I+ + A GS L G+T L + T + I ++ G Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S + +A S R+ G ++ RA+ ++ I + + Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 +++G + A + G+ +AL +K VA I+ G++ Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKKFAV 478 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G I +Q + + L A+ +++ Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMTVALEQARLGRLHILEQ 537 Query: 234 QKDVISNE 241 VIS Sbjct: 538 MNKVISKP 545 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 33/229 (14%) Query: 20 VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75 +++ A+G+ VK G++ LL TA + +K +T Y + +T G K Sbjct: 23 IARQADGAVTVKMGNSVLLCTAVVAKKA---KEGIGFFPLTINYREMAYATGKIPGGFFK 79 Query: 76 REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133 RE G+ R + R+I R +R + + + + C V+ D T AI GA Sbjct: 80 RE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134 Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193 AL VAA G++ G +++ T +D Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVAG 181 Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 T DS +VE +E +++ + + +IK+ K+ ++ E Sbjct: 182 TSDSVMMVE----SEAHLLAEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225 >gi|57234211|ref|YP_181693.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides ethenogenes 195] gi|123759700|sp|Q3Z7V6|PNP_DEHE1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|57224659|gb|AAW39716.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides ethenogenes 195] Length = 720 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 94/250 (37%), Gaps = 27/250 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56 +R++GR Q+R++ + GS L GDT ++ TL E + + Sbjct: 311 IRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQEAQQLDGLSAEDT 370 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P STG + SG G R + RAL V+ I + Sbjct: 371 KRFMLHYNFAPFSTGEVKR----SGSPGRREIGHGALAERALVPVLPTPEEFPYTIRMVA 426 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173 DV+ + G T ++ + ++L D +K VA IS G++ G Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGV-------------PVKKAVAGISIGLITGENDTY 473 Query: 174 --IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 I D++ ED+ D+D T G I +Q + S D + AK+ ++ Sbjct: 474 CTITDIEGIEDNYGDMDFKVAGTRDG-ITAIQVDMKVKGISFDVIRDAIYQAKEARYTIL 532 Query: 232 KLQKDVISNE 241 ++ ++ Sbjct: 533 EVMDKALAQP 542 Score = 76.3 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 27/230 (11%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLL---TTAT-LEEKVPMWIRNTKHGWITAEYGML 66 R++++ A+ + +++ DT LL A E V + G + Sbjct: 14 RKLTIESGKMARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLTIDYEERMYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126 P G ++RE GR ++ R+ R LR ++ QIII + Sbjct: 74 P---GGFIRRE---GRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIASDKENDAD 127 Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186 + GA L E G V A G G +++ + + Sbjct: 128 IWGVVGASTVLTMSQIPYE-------------GPVGASRVGYTNGEFVLNPTFAQLEQSQ 174 Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D V T +V ++ ++ +D + A +LI LQ + Sbjct: 175 MDLVVVSTRKA-VVMIEAGSKEIP--EDLMIKAIEFAHQANQELIDLQDE 221 >gi|256370772|ref|YP_003108597.1| putative polyribonucleotide nucleotidyltransferase [Candidatus Sulcia muelleri SMDSEM] gi|256009564|gb|ACU52924.1| putative polyribonucleotide nucleotidyltransferase [Candidatus Sulcia muelleri SMDSEM] Length = 691 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 82/214 (38%), Gaps = 30/214 (14%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 RL GR + +R+I GS + G+T L+T TL + + + Sbjct: 319 RLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVILQDQQ 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + +S R+ G + RAL++++ I + D Sbjct: 379 KFYLHYNFPPFSTGEIKLLKGISRREIGHG----NLAQRALKNIIPFKT--PYTIRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173 +++++G + A + + +AL D +K V+ IS G++ + Sbjct: 433 ILESNGSSSMATVCASTLALMDAGI-------------PIKRPVSGISMGLIINFLTDEA 479 Query: 174 --IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205 + D+ ED+ D+D T G I Q Sbjct: 480 IILSDILGDEDNIGDMDFKMTGTKFG-ITACQMD 512 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 39/247 (15%) Query: 10 QMRE----------ISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54 ++R+ IS+ A G+ +V+ G T L+ T + +E + Sbjct: 4 ELRKENIFLEDGQIISIETGKLACQANGTAVVRMGKTSLIATIVISKKEKEGINFLPLII 63 Query: 55 KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114 + Y + G +KRE R R+I R LR + + L QIII Sbjct: 64 DYKE---NYSAGGKIPGGFIKRE---RRPSDEEVLTMRLIDRLLRPLFPQNFLKEIQIII 117 Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174 ++ D L D L + + KG V+A+ + Sbjct: 118 Y--LLSYDRNV-----------LPDGLAGLVASAAVSISGIPFKGPVSAVRIIRFKNSFL 164 Query: 175 VDLDYGEDSTIDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 ++ S D N ++ I+ ++G E S++ + +A I I Sbjct: 165 INPGIK--SVKKSDINLIIGGTKNSILMIEG--EMKEISENEIIYFIKIAHFFIKLQITA 220 Query: 234 QKDVISN 240 Q ++I N Sbjct: 221 QINLIKN 227 >gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa] gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa] Length = 243 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 77/214 (35%), Gaps = 25/214 (11%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR +Q+R +S + V A GS GDT + + N + + Sbjct: 5 RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVSAAVYGPKAGTKKNENPEKACVEV 64 Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 + +G+ G +E + ++ R L+S+ L+ + I + Sbjct: 65 IWK-------------PKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVND 111 Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181 DG AI A AL D M+ + VA C GY I+D E Sbjct: 112 DGALLVCAINAACAALVDARIPMKHLA------------VAICCCLADVGYVILDPTKLE 159 Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215 + + A V +S V ++GS+ S +H Sbjct: 160 EQKMKGFAYLVFPNSVLSVLLEGSSLVEGESTEH 193 >gi|7716531|gb|AAF68421.1|AF237935_1 polynucleotide phosphorylase [Pasteurella multocida] Length = 684 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R + + V GS + G+T L ATL + I + G Sbjct: 287 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 346 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 347 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 402 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 403 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 449 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T +G + +Q + + + LN AK ++ + Sbjct: 450 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITAEIMQIALNQAKSARLHILGV 508 Query: 234 QKDVI 238 + I Sbjct: 509 MEQAI 513 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 26/207 (12%) Query: 34 DTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89 DT + T ++E + + T G +P G KRE GR Sbjct: 6 DTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP---GGFFKRE---GRPSEGETL 59 Query: 90 IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149 I R+I R +R + QI+ + A+ GA AL Sbjct: 60 IARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLVAMIGASAALS----------- 108 Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209 G + A G + +++ E +D TD ++ +E Sbjct: 109 --LSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAVLMV---ESEAD 163 Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKD 236 +++ A + + +I K+ Sbjct: 164 VLTEEQMLAAVVFGHQQQQVVIDAIKE 190 >gi|41614907|ref|NP_963405.1| exosome complex RNA-binding protein Rrp42 [Nanoarchaeum equitans Kin4-M] gi|40068631|gb|AAR38966.1| NEQ111 [Nanoarchaeum equitans Kin4-M] Length = 218 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 41/230 (17%) Query: 3 LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62 + R + R I + ++ + G+T ++ ++ E+ PM + Sbjct: 14 IDNRPLLEYRPIKIKEDQNR-----VWLSLGNTQVIAGLSISEEEPM---EKGKANLIVN 65 Query: 63 YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS---------VVDLSALGSRQII 113 P + +E G + + R+I RALRS V+D + + + Sbjct: 66 ADFSPIA-----GKEYFQGPPTEQDLILARLIDRALRSSNAIALEKHVIDENKV--KSFY 118 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173 ID V++ DG A++ + + + +N + + IS Sbjct: 119 IDVIVLEDDGNILDASML--------AVVKLLEKANLLERKPLY------ISFYKYKNII 164 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 VD E+ + + + +IV +Q +F ++ +++LA Sbjct: 165 FVDPTKEEEQISNAKISIAIDGE-NIVSIQKD--YGSFDENEIEELIDLA 211 >gi|325268379|ref|ZP_08135011.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis DSM 16608] gi|324989233|gb|EGC21184.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis DSM 16608] Length = 751 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57 R+ GR +++R I GS L + G+T L+T TL K+ + + + Sbjct: 325 RMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKMDEKMIDNVLEKSYQ 384 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P TG + V R+ G + RAL+ + + + Sbjct: 385 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRALKGQIPADF--PYTVRLVSQ 438 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 485 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G + Q + S + L AK ++ Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 544 Query: 232 KLQKDVISNE 241 L D I+ Sbjct: 545 NLLTDTIAEP 554 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 27/236 (11%) Query: 3 LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60 GR IS+ V+K A+G+ +++ G+T LL T +E VP Sbjct: 11 PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 64 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120 +Y R G KRE G+ R++ R LR + + + ++ Sbjct: 65 EQYSAAGRYPGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSDYHCE--VYVQVMLLS 119 Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180 AD V D L + ++ + + + G ++D + Sbjct: 120 AD-----------SVDQPDALAGFAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFE 168 Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 + D+D T +I+ V+G E S+ L A + I + ++Q++ Sbjct: 169 QMKEADMDLMVGATKD-NIMMVEG--EMDEVSEQDLIGALKAAHEAIKPMCEMQEE 221 >gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88] Length = 269 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 85/260 (32%), Gaps = 28/260 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTK 55 +RL GR+ N++R + + + GS + G+T +L + + + Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 + + + + +R +R S +Q R + ++ A +S + I I Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSR---VATILRSAFQSHLHTHLYPHSTISIH 130 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDC---------SNKFQLSQVLKGHVAAISC 166 V+ +DG AA+ +AL D M + + + Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTSGMSGSASTPRDPNNDTLDPLLD 190 Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE------VQGSAERATFSQDHFFAML 220 L +L + T+ + ++ I E V + + ML Sbjct: 191 LSLPEEQ--ELPFL---TVGTTTAVPVGEAAMINEDEDEMKVAMLTMDSKVHCTYVETML 245 Query: 221 NLAKDRIADLIKLQKDVISN 240 + D + ++ + VI Sbjct: 246 AVGIDGCKQIREILEGVIKK 265 >gi|224023647|ref|ZP_03642013.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM 18228] gi|224016869|gb|EEF74881.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM 18228] Length = 719 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 87/250 (34%), Gaps = 30/250 (12%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57 RL GR +R I GS + G+T L+T TL K+ I + Sbjct: 319 RLDGRATTDIRPIWCEVSPLPGPHGSSIFTRGETQSLSTVTLGTKLDEKIVDDVLDQHKE 378 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P STG + V R+ G + RAL+ + + + + D Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPEN--YPYCVRVVSD 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171 +++++G + A + +AL D +K V+ I+ G++ Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGV-------------PIKKPVSGIAMGLIKNAGEDKY 479 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED D+D T G I Q + + D L AK ++ Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKCDGLTYDILEKALLQAKQGREYIL 538 Query: 232 KLQKDVISNE 241 + I+ Sbjct: 539 GKLTECIAEP 548 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 21/231 (9%) Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69 R I+L K A+G+ +++ G+T LL T ++ VP +Y R Sbjct: 15 RTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYREKYSAFGRF 74 Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129 G KRE G+ R++ RALR + + ++ ++ + ADG Sbjct: 75 PGGFTKRE---GKASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILFSADG------ 123 Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189 V + D L + + G ++ + + G +++ + D+D Sbjct: 124 -----VDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERADMDI 178 Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 T +I+ V+G E S+ A + A + I K Q +++ Sbjct: 179 MVAATYE-NIMMVEG--EMKEVSEQDLLAAMKFAHEAIKVHCKAQMELMEE 226 >gi|91079418|ref|XP_967497.1| PREDICTED: similar to exosome complex exonuclease rrp42 (ribosomal RNA processing protein 42 [Tribolium castaneum] gi|270003471|gb|EEZ99918.1| hypothetical protein TcasGA2_TC002710 [Tribolium castaneum] Length = 285 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 30/262 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60 R+ GR+ R I L + +A GS ++ +T +L +E VP + K G + Sbjct: 19 FRVDGREREDYRPIELETNIVSHAFGSARLRLANTDVLVAVKIEVDVP-YPERPKEGKLE 77 Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQI 112 +T + R + EI + A +S V DL+ L +I Sbjct: 78 FFVDCSANATPDFEGRGGED-----LAIEISNSLSAAYKSPEVFDLTKLCILKGHKCWKI 132 Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVA 162 +D +++ G A AL D + D +L K V Sbjct: 133 FVDILLLECGGNLYDAVSIAVKAALWDTRIPLVKSVTVDGNNVDMEVSDELHDCQKLDVT 192 Query: 163 A----ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218 A ++ + IVD + E+ ++ +Q + + Sbjct: 193 AAPIMVTVCKIGEQCIVDPNVAEELCSVGAVVIAVSKDKFSTVLQIGS--GSLHPQTLLE 250 Query: 219 MLNLAKDRIADLIKLQKDVISN 240 L + + L + + +S Sbjct: 251 CLQMGEKVAQRLSEALTETLSE 272 >gi|323126485|gb|ADX23782.1| polynucleotide phosphorylase/polyadenylase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 710 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + A R+ G + RAL V+ I + Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + A + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538 Query: 233 LQKDVISNE 241 + ++ I+ Sbjct: 539 VIEETIAEP 547 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68 + + V+K A G+ +V++G++ +LT A + +K + + G P Sbjct: 14 PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G +KRE GR + R+I R +R + Q+I + A Sbjct: 73 --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL G +A + G + G I++ D + ++ Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 + I V+ A+ S+D L I +LI Q+ +++ Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222 >gi|25010273|ref|NP_734668.1| polynucleotide phosphorylase/polyadenylase [Streptococcus agalactiae NEM316] gi|77413798|ref|ZP_00789978.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 515] gi|81457782|sp|Q8E7F6|PNP_STRA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|23094625|emb|CAD45843.1| polynucleotide phosphorylase, alpha chain [Streptococcus agalactiae NEM316] gi|77160160|gb|EAO71291.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae 515] Length = 709 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 26/249 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 317 VRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 376 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + A R+ G + RAL V+ I + Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + L AK +++ Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 538 Query: 233 LQKDVISNE 241 + I+ Sbjct: 539 VLHGAIAEP 547 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 26/230 (11%) Query: 13 EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68 ++ + V+K A GS +V++GD+ +LT A + +K + + G P Sbjct: 14 KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 72 Query: 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128 G KRE GR + R+I R +R + Q+I + A Sbjct: 73 --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 127 Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188 A+ G+ +AL G +A + + G I++ E ++ Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 174 Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 T I V+ A+ S++ L + + +LI Q++++ Sbjct: 175 LTVAGTKEA-INMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 221 >gi|56118510|ref|NP_001007919.1| exosome component 8 [Xenopus (Silurana) tropicalis] gi|51513372|gb|AAH80360.1| exosc8 protein [Xenopus (Silurana) tropicalis] gi|89269528|emb|CAJ82996.1| exosome component 8 [Xenopus (Silurana) tropicalis] Length = 276 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 23/256 (8%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61 R GR+ + R ++ A+GS LVK G+ +L E P G++ Sbjct: 23 RPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAEFTAPP-ADAPNKGYVVP 81 Query: 62 EYGMLPRSTGNRVKREAVSGRQGG-RSQEIQRMIGRALRSVVDLSAL----GSRQIIIDC 116 + P + R G + SQ I +I + ++ L G ++ C Sbjct: 82 NVDLTPLCSSQF--RPGPPGEEAQVASQFIADVIDNS--QMLLKEDLCIAHGKLAWVLYC 137 Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS----------QVLKGHVAAI 164 D+ + DG + AL + + + L+ ++LK VA Sbjct: 138 DLICLDYDGNLLDTCMCALVAALQNVRLPSVKINEETGLAEVNLKTKHALKILKHPVATS 197 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 + +VD E+ V + + + + + + ++ A Sbjct: 198 FAVFDDTFLLVDPTGEEEGLASGLLTVVTDEDERLCATRKPG-GSALAAEKLQECISRAI 256 Query: 225 DRIADLIKLQKDVISN 240 R ++ L ++ +++ Sbjct: 257 TRHKEVTNLLQEALAS 272 >gi|156400116|ref|XP_001638846.1| predicted protein [Nematostella vectensis] gi|156225970|gb|EDO46783.1| predicted protein [Nematostella vectensis] Length = 710 Score = 98.6 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 77/228 (33%), Gaps = 15/228 (6%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53 R GRQ +++R I + K GS L K G+T + +TAT + + + Sbjct: 305 RCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISEAVGG 364 Query: 54 TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113 +K Y P ST +R G R + RAL V+ + Sbjct: 365 SKEKQFMLHYEFPPFSTNEVKQR---RGSFDRREIGHGALAERALVPVLPDEL--PFTLR 419 Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-Y 172 + +V+ ++G + A+ +A+ D ++ V S + Sbjct: 420 LTAEVLGSNGSSSLASACAGSLAMMDAGVPIKSHVAGSACGLVTSSDAEDASKRDIDNYQ 479 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 + D+ ED D+D T G I +Q + + Sbjct: 480 LLTDILGIEDYLGDMDFKIAGTRQG-ITALQADFKVPGLPVAIVEEAI 526 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 30/231 (12%) Query: 12 REISLTRRVSKY-AEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67 R++ + A+GS + ++ DT +L TA + + + ++P Sbjct: 2 RQLKFSTGKLALLADGSTVTQYEDTSVLVTAISSKKPSENSFLPLVVDYKEKASAACLIP 61 Query: 68 RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125 ++R+ ++ R + R I R++RS+ QII ++ AD Sbjct: 62 ---TTFLRRDLLA---NEREILVCRRIDRSVRSLFMKGYTYDTQII--SHLLAADRFNNP 113 Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185 A+ GA +L S +G V A+ G + G +V+ + Sbjct: 114 DVVAVNGASASLA-------------LSSIPWRGPVGAVRIGDVDGQLVVNPLRQQLEHS 160 Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 +D V + IV V+G A+ + + LA +I+ K+ Sbjct: 161 QLDL-VVTSSESKIVMVEGFAKEVP--DERLCEAIKLAFSEAQPIIQAIKE 208 >gi|313895740|ref|ZP_07829296.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975866|gb|EFR41325.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral taxon 137 str. F0430] Length = 635 Score = 98.6 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 28/250 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTK 55 +R GR N++R +S + GS L G T +L T T +E++ + Sbjct: 255 IRPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVL-TVTTLGSIGDEQIIDGLGPET 313 Query: 56 HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115 Y S G + R+ G + RAL ++ I + Sbjct: 314 TKHYLHHYNFPGYSVGEARPMRSPGRREIGHG----ALAERALFPMIPSIEDFPYTIRLV 369 Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171 ++++++G + ++ G+ ++L +K V+ ++ G++ Sbjct: 370 SEILESNGSSSMGSVCGSTLSLMCAGV-------------PIKRPVSGVAMGLVRDGDDY 416 Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231 + D+ ED+ D+D T G I +Q + A ++D + L AK+ A ++ Sbjct: 417 SILTDIQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIAGITRDILASALAQAKEGRAFIL 475 Query: 232 KLQKDVISNE 241 + I Sbjct: 476 DKMLECIDKP 485 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 19/165 (11%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G +KRE GR + R+I R +R + QI+ + D AA+ Sbjct: 17 GGFIKRE---GRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLSVDQDNPPEIAAM 73 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 GA AL G +A + G + G +++ E+ + N Sbjct: 74 LGASCAL-------------TVSDIPFMGPIAGVRVGYVNGAFVINP--KEEERAVSELN 118 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 + S V + + S++ + I L++ QK Sbjct: 119 LTVAGSYDAVMMVEAG-ANELSEEIVLDAILFGHAEIRRLVEFQK 162 >gi|260913802|ref|ZP_05920277.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] gi|260632115|gb|EEX50291.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis ATCC 43325] Length = 666 Score = 98.6 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58 R+ GR + +R + + V GS + G+T L ATL + I + G Sbjct: 269 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 328 Query: 59 -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + R+ G R+ R + +V+ A + + + Sbjct: 329 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 384 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173 + +++G + A++ GA +AL D +K VA I+ G++ Sbjct: 385 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 431 Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 + D+ ED D+D T G + +Q + + + LN AK ++ + Sbjct: 432 LSDILGDEDHLGDMDFKVAGTRQG-VTALQMDIKIEGITAEIMQIALNQAKSARLHILGV 490 Query: 234 QKDVI 238 + I Sbjct: 491 MEQAI 495 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 60/192 (31%), Gaps = 22/192 (11%) Query: 45 EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104 E + + T G +P G KRE GR I R+I R +R + Sbjct: 3 EGQDFFPLTVNYQERTYAAGRIP---GGFFKRE---GRPSEGETLIARLIDRPIRPLFPE 56 Query: 105 SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164 QI+ + A+ GA AL G + A Sbjct: 57 GFYNEIQIVATVVSVNPQICPDLVAMIGASAALS-------------LSGVPFNGPIGAA 103 Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 G + +++ E +D TD ++ +E +++ A + Sbjct: 104 RVGFIDNQFVLNPTMNEQKQSRLDLVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGH 160 Query: 225 DRIADLIKLQKD 236 ++ +I+ K+ Sbjct: 161 EQQQVVIEAIKE 172 >gi|153008079|ref|YP_001369294.1| polynucleotide phosphorylase/polyadenylase [Ochrobactrum anthropi ATCC 49188] gi|187610317|sp|A6WWW1|PNP_OCHA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151559967|gb|ABS13465.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum anthropi ATCC 49188] Length = 713 Score = 98.6 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%) Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57 R+ GR +R I + GS L G+T + ATL + + G Sbjct: 317 RIDGRDLKTVRAIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376 Query: 58 WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117 Y P S G + + R+ G ++ RA+ ++ + I + Sbjct: 377 SFMLHYNFPPYSVGETGRMGSPGRREVGHG----KLAWRAIHPMLPAADQFPYTIRSVSE 432 Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177 + +++G + A + G +AL D + + + +G A+ + D+ Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAV---------LSDI 483 Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 ED D+D TD+G I +Q + +++ L AK ++ Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542 Query: 238 ISN 240 +S Sbjct: 543 LST 545 Score = 88.6 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 77/229 (33%), Gaps = 31/229 (13%) Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66 R ++L +++ A+G+ L +G+T +L T + + + T G + Sbjct: 14 RPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73 Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124 P G KRE GR + R+I R +R + Q+++ V+Q D Sbjct: 74 P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVEGYKNDTQVVLT--VVQHDLENN 125 Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184 ++ A AL G + G + G +++ + E Sbjct: 126 PDVLSMVAASAAL-------------TISGVPFMGPIGGARVGYINGEYVLNPNIDEMPE 172 Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233 +D T ++ +E S++ + + +I Sbjct: 173 SKLDLVVAGTADAVLMV---ESEAQELSEEVMLGAVVFGQKGFQPVIDA 218 >gi|262281984|ref|ZP_06059753.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. 2_1_36FAA] gi|262262438|gb|EEY81135.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. 2_1_36FAA] Length = 668 Score = 98.6 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56 +R GR+ +++R + GS L G T L+ E ++ + Sbjct: 253 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 312 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y S G + G G R + RAL V+ I + Sbjct: 313 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 368 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172 +V++++G + A+I +AL +K VA I+ G++ Sbjct: 369 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISYGSNYT 415 Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 + D+ ED D+D T G I +Q + + + L AK +++ Sbjct: 416 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 474 Query: 233 LQKDVI 238 L + I Sbjct: 475 LIEATI 480 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 19/169 (11%) Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130 G KRE GR + R+I R +R + Q+I D + AA+ Sbjct: 9 GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 65 Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190 G+ +AL G +A + G + G I++ + ++ Sbjct: 66 FGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELT 112 Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 T I V+ A+ S+D L + +LI Q+++++ Sbjct: 113 VAGTKEA-INMVESGAKE--LSEDIMLEALLKGHQAVKELIAFQEEIVA 158 >gi|294675265|ref|YP_003575881.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola 23] gi|294472822|gb|ADE82211.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola 23] Length = 792 Score = 98.6 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 30/251 (11%) Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56 +RL GR+ +++R I GS + G+T L+T TL K+ + + + Sbjct: 323 IRLDGRKTDEIRPIWCEVSPLPMPHGSSIFTRGETQSLSTCTLGTKLDEKMVDDVLEHGY 382 Query: 57 GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116 Y P TG + V R+ G + R L+ + + + Sbjct: 383 QRFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPEDF--PYTVRLVS 436 Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171 +++++G + A + +AL D M K V+ I+ G++ Sbjct: 437 QILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDK 483 Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230 + D+ ED D+D T G + Q + S D L AK + Sbjct: 484 YAVLSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFDILEKALMQAKAGREHI 542 Query: 231 IKLQKDVISNE 241 +K D I+ Sbjct: 543 LKCLTDTIAEP 553 Score = 90.9 bits (225), Expect = 1e-16, Method: Composit