PSIBLAST alignment of GI: 254780630 and protein with PDB id: 2nn6
gi|122920912|pdb|2NN6|F Chain F, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 272
Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/245 (14%), Positives = 73/245 (29%), Gaps = 28/245 (11%)
Query: 6 RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
R ++R + + A+GS ++ G T +L + + R
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 56 --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
G + ++ P + R +E+ + AL V L Q+
Sbjct: 91 ALRGRLLCDFRRAPFAGRRRRAPPGGC-----EERELALALQEALEPAVRLGRYPRAQLE 145
Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
+ +++ G AA+T A +AL D M D LS +
Sbjct: 146 VSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWL--------- 196
Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
+D E+ + + V + ++ + + L + L +
Sbjct: 197 -LDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTES-WAEAVRLGLEGCQRLYPV 254
Query: 234 QKDVI 238
+ +
Sbjct: 255 LQQSL 259